Psyllid ID: psy3823

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MVNLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECEHPVAVSHRYVAKLYATNAKGAGPMVLMKTNTEVTSLMNKHIQ
Secondary Structure (PSIPRED)
cEEEEEEcccccEEEccccEEEEEEccccEEEEEEEEEEccccEEEEEEcccccccccccEEEEccccEEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEcccccccccccEEEEEcccccccccccccccEEEEEEEEEcccccEEEEEEccEEcccccccEEEEEccEEEEccccccccEEEEEEEEEcccccccccEEEEEEEEEEEEcccccccEEEccccEEEEEEccccEEEEEEEEEcccccEEEEEEccccccccccccEEEEcccEEEEEEEEccccccEEEEEEEEEccEEEEEEEEEEEEEccccccccEEEEccccEEEEEcccccccEEEEEccEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccEEccccEEEEEEcccEEEEEEEEcccccccEEEEEEccEEEccccccccEcccccEEEEEEEEcccccccEEEEEEEccccccccccEEEEEccccccccccccEEEEEEcccccccEEEcccEEEEEEEEcccccccEEEEEEccEEEcccccEEEEEcccEEEEEEEEcccccEEEEEEEccccccccccEEEEEEEccccccccccccccccccccEEEEEcccEEEEEEEEEccccccEEEEEEcccEEccccccEEEEccccEEEEEEEEcccccccEEEEEEEcccccccccEEEEEEEccccccccccccEEEEEEEEcccccccccEEEEcccccEEEcccccc
Coil and Loop (DISEMBL)
mvnlifnstdepvckqsQQRIYGALRNEQVLVSCtvdanpqaqyftwafnnsgtaprpltsysiqdgstsvarytptseleyGTLLCWArneqgnqrtpctfhvvkagecehpvdkpsvqiklgrnlnasvlnegvdiyfdchiqanppykkliwthngitisnnasagriiTNQTLVLQSvtrhsgglyacsainsqgeggstpfdlnINKMVNLIFNsidepvckqsQQRIYGALRNEQVLVSCtvdanpqaqyftwafnnsdtaprpltsysiqdgstsvarytptseleyGTLLCWArneqgsqrtpctfhvvkagecehpvAVSHRYVAKLYAtnakgagpmvLMKTNTEVTSLMNKHIQ
Flexible Loop (DISEMBL)
mvnlifnstdepvckQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECEHPVAVSHRYVAKLYAtnakgagpmvLMKTNTEVTslmnkhiq
Low Complexity Region (SEG)
MVNLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECEHPVAVSHRYVAKLYATNAKGAGPMVLMKTNTEVTSLMNKHIQ
Disordered region (IsUnstruct)
*************C***QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTA***LTSYSI****TSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD****************SVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECEHPVAVSHRYVAKLYATNAKGAGPMVLM***************
Disordered Region (DISOPRED)
MVNLIFNSTDEPVC************NEQVLVSCTVDANPQAQYFTWAFNNS****************TSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS**RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFN*******************SVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECEHPVAVSHRYVAKLYATNAKGAGPMVLMKT*************
Disordered Region (DISEMBL)
MVNLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECEHPVAVSHRYVAKLYATNAKGAGPMVLMKTNTEVTSLMNKHIQ
Disordered Region (DISPRO)
MVNLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECEHPVAVSHRYVAKLYATNAKGAGPMVLMKTNTEVTSLMN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVNLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECEHPVAVSHRYVAKLYATNAKGAGPMVLMKTNTEVTSLMNKHIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q8NFP4	955	MAM domain-containing gly	yes	N/A	0.745	0.284	0.246	1e-08
O01761	8081	Muscle M-line assembly pr	no	N/A	0.789	0.035	0.248	4e-08
Q0PMG2	940	MAM domain-containing gly	yes	N/A	0.745	0.289	0.243	4e-08
P85171	956	MAM domain-containing gly	yes	N/A	0.745	0.284	0.243	7e-08
Q0WYX8	949	MAM domain-containing gly	yes	N/A	0.630	0.242	0.238	1e-07
P11464	419	Pregnancy-specific beta-1	no	N/A	0.556	0.484	0.287	1e-06
Q9UQ74	426	Pregnancy-specific beta-1	no	N/A	0.539	0.462	0.290	2e-06
Q967D7	1531	Protein turtle OS=Drosoph	no	N/A	0.676	0.161	0.227	3e-06
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.706	0.050	0.215	3e-06
Q13046	419	Putative pregnancy-specif	no	N/A	0.547	0.477	0.276	5e-06

>sp|Q8NFP4|MDGA1_HUMAN MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Homo sapiens GN=MDGA1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 118/308 (38%), Gaps = 36/308 (11%)

Query: 10  DEPV--CKQSQQRIYGALRNEQ-VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQD 66
           DEP+    Q+   + G    E+ V + CTV++NP A+ F W   +   +        I +
Sbjct: 130 DEPMLTVHQTVSDVRGNFYQEKTVFLRCTVNSNPPAR-FIWKRGSDTLSHSQDNGVDIYE 188

Query: 67  -----GSTSVARYTPTSELEYGTLLCWA--RNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
                G T V +       +Y +  C    RN  G      TF +            P++
Sbjct: 189 PLYTQGETKVLKLKNLRPQDYASYTCQVSVRNVCGIPDKAITFRLTNT------TAPPAL 242

Query: 120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVL 179
           ++ +   L   V+N G ++   C +    P  +L W+H           G +    TL +
Sbjct: 243 KLSVNETL---VVNPGENVTVQCLLTGGDPLPQLQWSHG----PGPLPLGALAQGGTLSI 295

Query: 180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
            SV     G Y C+A N+ G       +L +  M N  F  I   V K+S+    G    
Sbjct: 296 PSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSMKNATFQ-ITPDVIKESENIQLG---- 350

Query: 240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL------E 293
           + + +SC VDA PQ +     F N   A R      +      +   T + EL      +
Sbjct: 351 QDLKLSCHVDAVPQEKVTYQWFKNGKPA-RMSKRLLVTRNDPELPAVTSSLELIDLHFSD 409

Query: 294 YGTLLCWA 301
           YGT LC A
Sbjct: 410 YGTYLCMA 417

Required for radial migration of cortical neurons in the superficial layer of the neocortex.
Homo sapiens (taxid: 9606)

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 76/306 (24%), Positives = 118/306 (38%), Gaps = 18/306 (5%)

Query: 28   EQVLVSCTVDANPQA--QYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTL 85
            + + + C VDANP A  ++F        TA   +   +  DG+  + +  P  E + G  
Sbjct: 5292 DPMFIECHVDANPTAEVEWFKDGKKIEHTAHTEIR--NTVDGACRI-KIIPFEESDIGVY 5348

Query: 86   LCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145
            +C A NE G   T  T+ V      E    +     K+   L    +N G  I   C + 
Sbjct: 5349 MCVAVNELGQAETQATYQVEILEHVEEE-KRREYAPKINPPLEDKTVNGGQPIRLSCKVD 5407

Query: 146  ANPPYKKLIWTHNGITISNNASAGRIITNQ---TLVLQSVTRHSGGLYACSAINSQGEGG 202
            A  P   ++W  +G+ +  ++            TL +   T    G Y C A N+ G   
Sbjct: 5408 A-IPRASVVWYKDGLPLRADSRTSIQYEEDGTATLAINDSTEEDIGAYRCVATNAHGT-I 5465

Query: 203  STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFN 262
            +T   +N+      +    +EP   +    ++ A R +   + C V  +P  +   W  N
Sbjct: 5466 NTSCSVNVKVPKQEVKKEGEEPFFTKGLVDLW-ADRGDSFTLKCAVTGDPFPE-IKWYRN 5523

Query: 263  NS--DTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA- 319
                   PR +   S  DGS S+     T   E G   C A N  G  +T  T HV  A 
Sbjct: 5524 GQLLRNGPRTVIETS-PDGSCSLTVNESTMSDE-GIYRCEAENAHGKAKTQATAHVQMAL 5581

Query: 320  GECEHP 325
            G+ E P
Sbjct: 5582 GKTEKP 5587

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|Q0PMG2|MDGA1_MOUSE MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Mus musculus GN=Mdga1 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 117/308 (37%), Gaps = 36/308 (11%)

Query: 10  DEPV--CKQSQQRIYGALRNEQ-VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQD 66
           DEPV    Q+   + G    E+ V + CTV +NP A+ F W   +   +        I +
Sbjct: 130 DEPVLTVHQTVSDVRGNFYQEKTVFLRCTVSSNPPAR-FIWKRGSDTLSHSQDNGVDIYE 188

Query: 67  -----GSTSVARYTPTSELEYGTLLCWA--RNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
                G T V +       +Y +  C    RN  G      TF +            P++
Sbjct: 189 PLYTQGETKVLKLKNLRPQDYASYTCQVSVRNVCGIPDKAITFQLTNT------TAPPAL 242

Query: 120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVL 179
           ++ +   L   V+N G ++   C +    P  +L W+H           G +    TL +
Sbjct: 243 KLSVNETL---VVNPGENVTVQCLLTGGDPLPQLHWSHG----PGPLPLGALAQGGTLSI 295

Query: 180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
            SV     G Y C+A N+ G       +L +  + N  F  I   + K+S+    G    
Sbjct: 296 PSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSLKNATFQ-ITPDMIKESENIQLG---- 350

Query: 240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL------E 293
           + + +SC VDA PQ +     F N   A R      +      +   T + EL      +
Sbjct: 351 QDLKLSCHVDAVPQEKVNYQWFKNGKPA-RTSKRLLVTRNDPELPAVTSSLELIDLHFSD 409

Query: 294 YGTLLCWA 301
           YGT LC A
Sbjct: 410 YGTYLCMA 417

Required for radial migration of cortical neurons in the superficial layer of the neocortex.

Mus musculus (taxid: 10090)

>sp|P85171|MDGA1_RAT MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Rattus norvegicus GN=Mdga1 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 117/308 (37%), Gaps = 36/308 (11%)

Query: 10  DEPV--CKQSQQRIYGALRNEQ-VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQD 66
           DEPV    Q+   + G    E+ V + CTV +NP A+ F W   +   +        I +
Sbjct: 130 DEPVLTVHQTVSDVRGNFYQEKTVFLRCTVSSNPPAR-FIWKRGSDTLSHSQDNGVDIYE 188

Query: 67  -----GSTSVARYTPTSELEYGTLLCWA--RNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
                G T V +       +Y +  C    RN  G      TF +            P++
Sbjct: 189 PLYTQGETKVLKLKNLRPQDYASYTCQVSVRNVCGIPDKSITFQLTNT------TAPPTL 242

Query: 120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVL 179
           ++ +   L   V+N G ++   C +    P  +L W+H           G +    TL +
Sbjct: 243 KLSVNETL---VVNPGENVTVQCLLTGGDPLPQLHWSHG----PGPLPLGALAQGGTLSI 295

Query: 180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
            SV     G Y C+A N+ G       +L +  + N  F  I   + K+S+    G    
Sbjct: 296 PSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSLKNATFQ-ITPDMIKESENIQLG---- 350

Query: 240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL------E 293
           + + +SC VDA PQ +     F N   A R      +      +   T + EL      +
Sbjct: 351 QDLKLSCHVDAVPQEKVNYQWFKNGKPA-RTSKRLLVTRNDPELPAVTSSLELIDLHFSD 409

Query: 294 YGTLLCWA 301
           YGT LC A
Sbjct: 410 YGTYLCVA 417

Required for radial migration of cortical neurons in the superficial layer of the neocortex.

Rattus norvegicus (taxid: 10116)

>sp|Q0WYX8|MDGA1_CHICK MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Gallus gallus GN=MDGA1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 38/268 (14%)

Query: 10  DEPV--CKQSQQRIYGALRNEQ-VLVSCTVDANPQAQYFTW---------AFNNSGTAPR 57
           DEPV    Q+   + G+   E+ V + CTV++NP A+ F W         + +N      
Sbjct: 130 DEPVLTVHQTISDVRGSFYQEKTVFLRCTVNSNPPAR-FIWKRGAETLSHSQDNGVDIYE 188

Query: 58  PLTSYSIQDGSTSVARYTPTSELEYGTLLCWA--RNEQGNQRTPCTFHVVKAGECEHPVD 115
           PL +     G T V +       +Y +  C    RN         TF +           
Sbjct: 189 PLYT----QGETKVLKLKNLRPQDYASYTCQVSVRNVCSIPDKSITFQLTNT------TA 238

Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ 175
            P++++ +   L   V+N G ++   C +    P  +++W+H+   +  N+    ++   
Sbjct: 239 PPALKLSVNETL---VVNPGDNVTMQCSLTGGDPQPEVLWSHSPGPLPPNS----LVQGG 291

Query: 176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG 235
            L +  +     G Y C+AIN+ G       +L +  M N  F  I   V K+S+    G
Sbjct: 292 NLTIWRIRVEDSGYYNCTAINNVGNPAKKTVNLLVRSMKNATFQ-ITPDVIKESETIQLG 350

Query: 236 ALRNEQVLVSCTVDANPQAQ-YFTWAFN 262
               + + +SC VDA PQ +  ++W  N
Sbjct: 351 ----QDLKLSCHVDAVPQEKVVYSWYKN 374

Required for radial migration of cortical neurons in the superficial layer of the neocortex.

Gallus gallus (taxid: 9031)

>sp|P11464|PSG1_HUMAN Pregnancy-specific beta-1-glycoprotein 1 OS=Homo sapiens GN=PSG1 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 103/257 (40%), Gaps = 54/257 (21%)

Query: 26  RNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS-------VARYTPT 77
           R     VS T D   P A Y  W    S     P+T +S++   T+       V +YT  
Sbjct: 159 RETMEAVSLTCDPETPDASYLWWMNGQS----LPMT-HSLKLSETNRTLFLLGVTKYTA- 212

Query: 78  SELEYGTLLCWARNEQGNQRT-PCTFHVVKAGECEHPVDKPSVQIK-LGRNLNASVLNEG 135
                G   C  RN     R+ P T +++        + KP + I  L    N  VLN  
Sbjct: 213 -----GPYECEIRNPVSASRSDPVTLNLLPK------LPKPYITINNLNPRENKDVLN-- 259

Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI 195
               F C  ++       IW  NG ++  +    R I N+ L+L SVTR+  G Y C   
Sbjct: 260 ----FTCEPKSE--NYTYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEIR 313

Query: 196 NSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGAL---RNEQVL-VSCTVDAN 251
           +  G   S P  LN       +    D P       RIY +    R+ +VL +SC+ D+N
Sbjct: 314 DRYGGIRSDPVTLN-------VLYGPDLP-------RIYPSFTYYRSGEVLYLSCSADSN 359

Query: 252 PQAQYFTWAFNNSDTAP 268
           P AQY +W  N     P
Sbjct: 360 PPAQY-SWTINEKFQLP 375

Homo sapiens (taxid: 9606)

>sp|Q9UQ74|PSG8_HUMAN Pregnancy-specific beta-1-glycoprotein 8 OS=Homo sapiens GN=PSG8 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 101/251 (40%), Gaps = 54/251 (21%)

Query: 26  RNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS-------VARYTPT 77
           R     VS T D   P A Y  W   N  + P    S+ +Q   T+       V +YT  
Sbjct: 159 REAMEAVSLTCDPETPDASYLWWM--NGQSLP---MSHRLQLSETNRTLFLLGVTKYTA- 212

Query: 78  SELEYGTLLCWARNEQGNQRT-PCTFHVVKAGECEHPVDKPSVQIK-LGRNLNASVLNEG 135
                G   C  RN     R+ P T +++        + KP + I  L    N  VLN  
Sbjct: 213 -----GPYECEIRNPVSASRSDPFTLNLLPK------LPKPYITINNLKPRENKDVLN-- 259

Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI 195
               F C  ++       IW  NG ++  +    R I N+ L+L SVTR+  G Y C   
Sbjct: 260 ----FTCEPKSE--NYTYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEIR 313

Query: 196 NSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGAL---RNEQVL-VSCTVDAN 251
           +  G   S P  LN+           D P       RIY +    R+ +VL +SC+ D+N
Sbjct: 314 DQYGGIRSYPVTLNV-------LYGPDLP-------RIYPSFTYYRSGEVLYLSCSADSN 359

Query: 252 PQAQYFTWAFN 262
           P AQY +W  N
Sbjct: 360 PPAQY-SWTIN 369

Homo sapiens (taxid: 9606)

>sp|Q967D7|TUTL_DROME Protein turtle OS=Drosophila melanogaster GN=tutl PE=2 SV=2

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 108/286 (37%), Gaps = 39/286 (13%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC 87
           + ++++C  D  P  +   W  + +   P P       DG+    R +     + G   C
Sbjct: 269 DSIILNCQADGTPTPEIL-WYKDANPVDPSPTVGI-FNDGTE--LRISTIRHEDIGEYTC 324

Query: 88  WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN 147
            ARN +G  +   T  V+ AG     V  P+ Q KL          EG  + F C  +A 
Sbjct: 325 IARNGEG--QVSHTARVIIAGGAVIMV-PPTNQTKL----------EGEKVIFSCEAKAM 371

Query: 148 PPYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
           P    + W   G  +   A+    +T   + +L++  +     G Y C   N  G+  S 
Sbjct: 372 PGNVTVRWYREGSPVREVAALETRVTIRKDGSLIINPIKPDDSGQYLCEVTNGIGDPQSA 431

Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS 264
              L++     + F     P  +    R+ G       +V C + ++PQ QY TW  +  
Sbjct: 432 SAYLSVEYPAKVTFT----PTVQYLPFRLAG-------VVQCYIKSSPQLQYVTWTKDK- 479

Query: 265 DTAPRPLTSYSIQD---GSTSVARYTPTSELEYGTLLCWARNEQGS 307
               R L  Y ++D    +     +T  +E   G   C   N QG+
Sbjct: 480 ----RLLEPYQMKDIVVMANGSLLFTRVNEEHQGQYACTPYNAQGT 521

Essential protein that plays a role in the establishment of coordinated motor control.

Drosophila melanogaster (taxid: 7227)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 116/297 (39%), Gaps = 39/297 (13%)

Query: 24   ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
            A+  E+VL+ C     P+    TW       A   +++  +  G   +A  +P    + G
Sbjct: 3959 AVAEEEVLLPCEASGIPRPT-ITWQKEGLNVA-TGVSTQVLPGGQLRIAHASPE---DAG 4013

Query: 84   TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
              LC A+N  G+            G+    V  P V   +   L      EG   +  C 
Sbjct: 4014 NYLCIAKNSAGS----------AMGKTRLVVQVPPV---IENGLPDLSTTEGSHAFLPCK 4060

Query: 144  IQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGS 203
             + +P    + W  +G  +S       I  +  L+++++     G Y C+A N+ G    
Sbjct: 4061 ARGSP-EPNITWDKDGQPVSGAEGKFTIQPSGELLVKNLEGQDAGTYTCTAENAVGRARR 4119

Query: 204  TPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNN 263
                +++  +V  +F ++      +   R++         + C    +P  +   W  N+
Sbjct: 4120 R---VHLTILVLPVFTTLPGDRSLRLGDRLW---------LRCAARGSPTPR-IGWTVND 4166

Query: 264  SDTAPRPLT-SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA 319
                 RP+T   S QDG +++ R   + E + GT +CWA N  G  +     HV +A
Sbjct: 4167 -----RPVTEGVSEQDGGSTLQRAAVSRE-DSGTYVCWAENRVGRTQAVSFVHVKEA 4217

Homo sapiens (taxid: 9606)

>sp|Q13046|PSG7_HUMAN Putative pregnancy-specific beta-1-glycoprotein 7 OS=Homo sapiens GN=PSG7 PE=5 SV=2

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 42/242 (17%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT-PTSELEYGTLL 86
           E V+++C  +  P A Y  W    S     P+T +S+Q   T+   Y    +    G   
Sbjct: 163 EAVILTCDPET-PDASYLWWMNGQS----LPMT-HSLQLSETNRTLYLFGVTNYTAGPYE 216

Query: 87  CWARNEQGNQRT-PCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDI-YFDCHI 144
           C  RN     R+ P T +++        + KP + I    NLN     E  D+  F C  
Sbjct: 217 CEIRNPVSASRSDPVTLNLLPK------LPKPYITIN---NLNP---RENKDVSTFTCEP 264

Query: 145 QANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
           ++       IW  NG ++  +    R I N+ L+L SVTR+  G Y C   +  G   S 
Sbjct: 265 KSE--NYTYIWWLNGQSLPVSPRVKRRIENRILILPSVTRNETGPYQCEIRDRYGGIRSD 322

Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGAL----RNEQVLVSCTVDANPQAQYFTWA 260
           P  LN       +    D P       RIY +       + + +SC  D+NP AQY +W 
Sbjct: 323 PVTLN-------VLYGPDLP-------RIYPSFTYYHSGQNLYLSCFADSNPPAQY-SWT 367

Query: 261 FN 262
            N
Sbjct: 368 IN 369

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
242021433	647	Fasciclin-2 precursor, putative [Pedicul	0.545	0.307	0.492	6e-53
242010771	853	sidestep protein, putative [Pediculus hu	0.531	0.227	0.455	5e-49
345495896	923	PREDICTED: nephrin-like [Nasonia vitripe	0.547	0.216	0.457	3e-48
347966676	1016	AGAP001824-PA [Anopheles gambiae str. PE	0.758	0.272	0.356	3e-48
307198721	976	Nephrin [Harpegnathos saltator]	0.547	0.204	0.442	7e-48
21356009	939	CG12950, isoform A [Drosophila melanogas	0.594	0.231	0.432	9e-48
195330304	939	GM26222 [Drosophila sechellia] gi|194120	0.594	0.231	0.432	1e-47
224586972	631	RT01989p [Drosophila melanogaster]	0.654	0.378	0.406	1e-47
195572176	939	GD20766 [Drosophila simulans] gi|1941999	0.594	0.231	0.432	1e-47
157116252	458	sidestep protein [Aedes aegypti] gi|1088	0.660	0.526	0.375	1e-47

>gi|242021433|ref|XP_002431149.1| Fasciclin-2 precursor, putative [Pediculus humanus corporis] gi|212516398|gb|EEB18411.1| Fasciclin-2 precursor, putative [Pediculus humanus corporis]

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 103/209 (49%), Positives = 134/209 (64%), Gaps = 10/209 (4%)

Query: 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT 176
           P V + LG N+N S + EGVD+YF+C + ANP  + + W H G  ++NNA+AG II NQT
Sbjct: 329 PQVTLTLGSNINGSSIREGVDVYFECSVTANPWIRLVTWQHGGKNLTNNATAGTIIANQT 388

Query: 177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGA 236
           LVLQSV+R++ G+Y CSA NS+G   S  F L++            EP C+  QQRIYGA
Sbjct: 389 LVLQSVSRYNTGIYTCSASNSEGSAESNSFLLDVKY----------EPQCRPGQQRIYGA 438

Query: 237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 296
            RNE V V+C VD+NP A  F W FNNS    + +   +I+ G  SVA Y+PT+E  YGT
Sbjct: 439 ARNEMVTVTCEVDSNPSASLFRWTFNNSVVKSKDVDFRTIEQGGKSVATYSPTNEQGYGT 498

Query: 297 LLCWARNEQGSQRTPCTFHVVKAGECEHP 325
           LLCW RNE G Q  PC +H+V AG+ + P
Sbjct: 499 LLCWGRNELGPQVVPCVYHIVPAGKPDPP 527

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010771|ref|XP_002426132.1| sidestep protein, putative [Pediculus humanus corporis] gi|212510179|gb|EEB13394.1| sidestep protein, putative [Pediculus humanus corporis]

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 10/204 (4%)

Query: 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT 176
           P  +I+LG++LN + + EG D+YFDC I A P   K+ W HNG  +++N + G II+NQ+
Sbjct: 441 PECRIELGKSLNKNTIREGSDVYFDCFITAEPSVYKVEWKHNGRQLNHNIARGIIISNQS 500

Query: 177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGA 236
           LVLQSV+R SGG Y+C   NS+GE  S PFDLNI          +  P CK +Q R++G 
Sbjct: 501 LVLQSVSRSSGGNYSCLGYNSEGESESDPFDLNI----------LYAPTCKPNQIRVHGI 550

Query: 237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 296
            ++E+  +SC V+ANP    F W FNNS  +    +S+  + G+ S+  YTP +E++YGT
Sbjct: 551 AKSEKASISCAVEANPSDVTFRWLFNNSAESIDVASSHITKSGTLSIVSYTPRTEMDYGT 610

Query: 297 LLCWARNEQGSQRTPCTFHVVKAG 320
           LLCWA+N  G Q+ PC FH++ AG
Sbjct: 611 LLCWAKNSIGDQKVPCVFHIIAAG 634

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495896|ref|XP_001601559.2| PREDICTED: nephrin-like [Nasonia vitripennis]

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/210 (45%), Positives = 133/210 (63%), Gaps = 10/210 (4%)

Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ 175
           KP  +I+LG +L+ + + EG D+YFDC IQA PP  K+ WTH G T+++N S G II+NQ
Sbjct: 340 KPETKIRLGTSLDPNAIKEGSDVYFDCLIQARPPVYKVEWTHQGKTLNHNISRGVIISNQ 399

Query: 176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG 235
           +LVLQ V R + G Y C   N++G+G S PF LN+      +F     P CK +Q +++G
Sbjct: 400 SLVLQGVDRKNAGNYTCVGYNTEGDGQSEPFYLNV------MF----APTCKPNQTKVHG 449

Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
             + E+  +SC VDANP    F W FNNS  +     S+    G++SVA Y PT EL+YG
Sbjct: 450 VAKQEKASISCEVDANPPEVDFRWTFNNSADSVDLDRSHVSTTGTSSVASYMPTIELDYG 509

Query: 296 TLLCWARNEQGSQRTPCTFHVVKAGECEHP 325
           TLLCWARN  G+Q+ PC +H++ AG  + P
Sbjct: 510 TLLCWARNRIGTQQIPCIYHIIPAGRPDVP 539

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966676|ref|XP_321229.5| AGAP001824-PA [Anopheles gambiae str. PEST] gi|333469949|gb|EAA01423.6| AGAP001824-PA [Anopheles gambiae str. PEST]

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 168/306 (54%), Gaps = 29/306 (9%)

Query: 27  NEQVLVSC-TVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVAR--YTPTSELEYG 83
           + + +V C +V + P A+   W      TA    TS   +DG++++A   +TPT E    
Sbjct: 254 DRRYIVQCQSVGSRPPAKITWWMGGVQLTATNQTTS---EDGNSTLASLSFTPTREDHGK 310

Query: 84  TLLCWARNE---QGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
           TL+C A NE   +G + T    +V            P+++++LG N+N   + EG D+YF
Sbjct: 311 TLICRATNELVKRGTKETSMKLNVFYL---------PTLKLELGINMNPEDIEEGDDVYF 361

Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
           +C + ANP   K++W HN   + +N+ +G I+++  L LQ+VTRH  G Y C A N +G+
Sbjct: 362 ECKVNANPSAYKVVWKHNDKVVQHNSKSGVIMSSTALALQTVTRHQAGNYTCIASNVEGD 421

Query: 201 GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA 260
           G S   DL +          + +P+C+  Q++IYG  RNE   + C VDA P  + F W+
Sbjct: 422 GESNTVDLKV----------MYKPICRPDQKKIYGVARNEAAEILCQVDAYPPPESFKWS 471

Query: 261 FNN-SDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA 319
           FNN ++T   P + Y +     S   YTP  EL+YGT++CWA N  G Q+ PC FH++ A
Sbjct: 472 FNNTAETIDMPQSGYRVHAEQASSLTYTPVKELDYGTIMCWADNVVGQQKEPCVFHLIAA 531

Query: 320 GECEHP 325
           G+ E P
Sbjct: 532 GKPEMP 537

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198721|gb|EFN79530.1| Nephrin [Harpegnathos saltator]

 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 93/210 (44%), Positives = 134/210 (63%), Gaps = 10/210 (4%)

Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ 175
           +P V ++LG NLN+S + EG+D+YF+C+I++NP   K+ W HNG  + +NA+ G II+NQ
Sbjct: 321 EPVVTLELGSNLNSSAIREGIDVYFECNIKSNPWVYKVSWRHNGNPLYHNAATGTIISNQ 380

Query: 176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG 235
           +LVLQSVTR   G+Y C   N +G+G S P +L+I K V         PVC+  Q +++G
Sbjct: 381 SLVLQSVTRSRAGIYTCIGNNQEGDGESNPLNLDI-KFV---------PVCQHGQTKVFG 430

Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
             R E   + C ++ANP    FTW FNN+  A     ++   D + S+A YTP +EL+YG
Sbjct: 431 VARQETASIPCELEANPPEVSFTWKFNNTMEAVDIPQAHVTSDRTRSIASYTPMTELDYG 490

Query: 296 TLLCWARNEQGSQRTPCTFHVVKAGECEHP 325
           TLLCW  N+QG+Q  PC +H+V AG  + P
Sbjct: 491 TLLCWGSNDQGTQLEPCVYHIVPAGRPDTP 520

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21356009|ref|NP_649933.1| CG12950, isoform A [Drosophila melanogaster] gi|442618306|ref|NP_001262432.1| CG12950, isoform B [Drosophila melanogaster] gi|17861610|gb|AAL39282.1| GH14967p [Drosophila melanogaster] gi|23170839|gb|AAF54434.2| CG12950, isoform A [Drosophila melanogaster] gi|220947102|gb|ACL86094.1| CG12950-PA [synthetic construct] gi|440217266|gb|AGB95814.1| CG12950, isoform B [Drosophila melanogaster]

 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 99/229 (43%), Positives = 139/229 (60%), Gaps = 12/229 (5%)

Query: 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT 176
           P   ++LG +L+ S L EG D+YFDC + A+P   ++ W HN   +S+N S G II+N +
Sbjct: 343 PEAYVRLGTSLDPSTLREGTDVYFDCLVMAHPNVFRIEWRHNEQPLSHNISLGVIISNHS 402

Query: 177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGA 236
           LVLQ VTR + G Y+C   N++GEG S PF LNI          +  P C Q+Q+++YG 
Sbjct: 403 LVLQGVTRATAGNYSCVGFNAEGEGISAPFALNI----------LYAPTCAQNQKKVYGI 452

Query: 237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 296
            + E   V CTVDANP+   F+W FNNS  +    T++ I+ G+TS+  YTP +EL+YGT
Sbjct: 453 AKQEDAKVMCTVDANPREVEFSWTFNNSAESIDVATNHIIRSGTTSIVTYTPITELDYGT 512

Query: 297 LLCWARNEQGSQRTPCTFHVVKAGECE--HPVAVSHRYVAKLYATNAKG 343
           LLC A N+ G QR PC FH++ AG  E  H   V++  +  L  T + G
Sbjct: 513 LLCLASNKIGKQRVPCVFHIIAAGRPEKVHNCTVNNISMTSLTVTCSDG 561

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195330304|ref|XP_002031844.1| GM26222 [Drosophila sechellia] gi|194120787|gb|EDW42830.1| GM26222 [Drosophila sechellia]

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/229 (43%), Positives = 139/229 (60%), Gaps = 12/229 (5%)

Query: 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT 176
           P   ++LG +L+ S L EG D+YFDC + A+P   ++ W HN   +S+N S G II+N +
Sbjct: 343 PEAYVRLGTSLDPSTLREGTDVYFDCLVMAHPNVFRIEWRHNEQPLSHNISQGVIISNHS 402

Query: 177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGA 236
           LVLQ VTR + G Y+C   N++GEG S PF LNI          +  P C Q+Q+++YG 
Sbjct: 403 LVLQGVTRATAGNYSCVGFNAEGEGISAPFALNI----------LYAPTCAQNQKKVYGI 452

Query: 237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 296
            + E   V CTVDANP+   F+W FNNS  +    T++ I+ G+TS+  YTP +EL+YGT
Sbjct: 453 AKQEDAKVMCTVDANPREVEFSWTFNNSAESIDVATNHIIRSGTTSIVTYTPITELDYGT 512

Query: 297 LLCWARNEQGSQRTPCTFHVVKAGECE--HPVAVSHRYVAKLYATNAKG 343
           LLC A N+ G QR PC FH++ AG  E  H   V++  +  L  T + G
Sbjct: 513 LLCLASNKIGKQRVPCVFHIIAAGRPEKVHNCTVNNISMTSLTVTCSDG 561

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224586972|gb|ACN58585.1| RT01989p [Drosophila melanogaster]

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/251 (40%), Positives = 146/251 (58%), Gaps = 12/251 (4%)

Query: 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT 176
           P   ++LG +L+ S L EG D+YFDC + A+P   ++ W HN   +S+N S G II+N +
Sbjct: 324 PEAYVRLGTSLDPSTLREGTDVYFDCLVMAHPNVFRIEWRHNEQPLSHNISLGVIISNHS 383

Query: 177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGA 236
           LVLQ VTR + G Y+C   N++GEG S PF LNI          +  P C Q+Q+++YG 
Sbjct: 384 LVLQGVTRATAGNYSCVGFNAEGEGISAPFALNI----------LYAPTCAQNQKKVYGI 433

Query: 237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 296
            + E   V CTVDANP+   F+W FNNS  +    T++ I+ G+TS+  YTP +EL+YGT
Sbjct: 434 AKQEDAKVMCTVDANPREVEFSWTFNNSAESIDVATNHIIRSGTTSIVTYTPITELDYGT 493

Query: 297 LLCWARNEQGSQRTPCTFHVVKAGECE--HPVAVSHRYVAKLYATNAKGAGPMVLMKTNT 354
           LLC A N+ G QR PC FH++ AG  E  H   V++  +  L  T + G    +    N 
Sbjct: 494 LLCLASNKIGKQRVPCVFHIIAAGRPEKVHNCTVNNISMTSLTVTCSDGFNGGLPQSFNL 553

Query: 355 EVTSLMNKHIQ 365
           E+     + I+
Sbjct: 554 ELLDSYTQEIK 564

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195572176|ref|XP_002104072.1| GD20766 [Drosophila simulans] gi|194199999|gb|EDX13575.1| GD20766 [Drosophila simulans]

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/229 (43%), Positives = 139/229 (60%), Gaps = 12/229 (5%)

Query: 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT 176
           P   ++LG +L+ S L EG D+YFDC + A+P   ++ W HN   +S+N S G II+N +
Sbjct: 343 PEAYVRLGTSLDPSTLREGTDVYFDCLVMAHPNVFRIEWRHNEQPLSHNISQGVIISNHS 402

Query: 177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGA 236
           LVLQ VTR + G Y+C   N++GEG S PF LNI          +  P C Q+Q+++YG 
Sbjct: 403 LVLQGVTRATAGNYSCVGFNAEGEGISAPFALNI----------LYAPTCAQNQKKVYGI 452

Query: 237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 296
            + E   V CTVDANP+   F+W FNNS  +    T++ I+ G+TS+  YTP +EL+YGT
Sbjct: 453 AKQEDAKVMCTVDANPREVEFSWTFNNSAESIDVATNHIIRSGTTSIVTYTPITELDYGT 512

Query: 297 LLCWARNEQGSQRTPCTFHVVKAGECE--HPVAVSHRYVAKLYATNAKG 343
           LLC A N+ G QR PC FH++ AG  E  H   V++  +  L  T + G
Sbjct: 513 LLCLASNKIGKQRVPCVFHIIAAGRPEKVHNCTVNNISMTSLTVTCSDG 561

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116252|ref|XP_001658403.1| sidestep protein [Aedes aegypti] gi|108883456|gb|EAT47681.1| AAEL001227-PA [Aedes aegypti]

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/264 (37%), Positives = 147/264 (55%), Gaps = 23/264 (8%)

Query: 66  DGSTSVARYTPTSELEYGTLLCWARNE---QGNQRTPCTFHVVKAGECEHPVDKPSVQIK 122
           + +TS+  +TPT E    TL C A NE   +G + T    +V            P+++++
Sbjct: 193 NSTTSLLSFTPTREDHGRTLTCRAVNELVKRGTKETSIKLNVFYL---------PTLKLE 243

Query: 123 LGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSV 182
           LG N+N   + EG D+YF+C + ANP   K++W HN   + +N+  G I+++  L LQ+V
Sbjct: 244 LGTNMNPEDIEEGDDVYFECKVNANPSAYKVVWKHNDQVVQHNSKTGVIMSSTALALQAV 303

Query: 183 TRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQV 242
           TRH  G Y C A N +G+G S   DL +          + +P+C+  Q++IYG  RNE  
Sbjct: 304 TRHQAGNYTCIASNVEGDGESNTVDLKV----------MYKPICRPDQKKIYGVARNEAA 353

Query: 243 LVSCTVDANPQAQYFTWAFNNS-DTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301
            + C VDA P  + F W+FNN+ +T   P + Y +     S   YTP  EL+YGT++CWA
Sbjct: 354 EILCQVDAYPAPESFKWSFNNTAETIDMPQSGYRVHTEQASTLTYTPVKELDYGTIMCWA 413

Query: 302 RNEQGSQRTPCTFHVVKAGECEHP 325
            N  G QR PC FH++ AG+ E P
Sbjct: 414 DNAVGQQREPCVFHLIAAGKPEMP 437

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
FB|FBgn0259213	1064	CG42313 [Drosophila melanogast	0.747	0.256	0.373	9.9e-42
FB|FBgn0086604	1201	CG12484 [Drosophila melanogast	0.778	0.236	0.356	8.5e-40
FB|FBgn0016061	939	side "sidestep" [Drosophila me	0.542	0.210	0.310	3.3e-21
UNIPROTKB|F1PGE1	954	MDGA1 "Uncharacterized protein	0.742	0.284	0.258	1.6e-10
UNIPROTKB|F1RVR8	935	MDGA1 "Uncharacterized protein	0.742	0.289	0.258	2e-10
UNIPROTKB|Q8NFP4	955	MDGA1 "MAM domain-containing g	0.742	0.283	0.255	2.7e-10
UNIPROTKB|J3KNB7	959	MDGA1 "MAM domain-containing g	0.742	0.282	0.255	2.7e-10
MGI|MGI:1922012	940	Mdga1 "MAM domain containing g	0.742	0.288	0.252	5.6e-10
UNIPROTKB|F1MHX8	955	MDGA1 "Uncharacterized protein	0.742	0.283	0.255	7.5e-10
UNIPROTKB|D4AC96	941	Mdga1 "MAM domain-containing g	0.742	0.287	0.252	9.4e-10

FB|FBgn0259213 CG42313 [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 9.9e-42, P = 9.9e-42
 Identities = 114/305 (37%), Positives = 161/305 (52%)

Query:    32 VSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWAR 90
             VSC    +      TW     G      T   I   ST S   + PT++ +  ++ C A 
Sbjct:   290 VSCESSGSRPNAIITWY---KGKRQLRRTKDDISKNSTRSELSFVPTTDDDGKSITCRAE 346

Query:    91 NEQGNQ---RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN 147
             N   N     T    +VV      +P   P V ++LG  L    + EG D+YF+CH+Q+N
Sbjct:   347 NPNVNGLYLETMWKLNVV------YP---PLVTLRLGSTLTPDDIKEGDDVYFECHVQSN 397

Query:   148 PPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFD 207
             P ++KL+W HNGI + +N SA  I +NQ+LVLQ +T+H  G YACSAIN +GE  S    
Sbjct:   398 PQWRKLLWLHNGIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSNQLP 457

Query:   208 LNINKMVNLIFNSIDEPVCKQSQQRIY-GALRNEQVLVSCTVDANPQAQYFTWAFNNS-D 265
             L +             P+CK + + I  GA ++E V V C + A+P  + F W FNNS +
Sbjct:   458 LRVKYT----------PMCKHADRVILIGASKDETVEVVCEIQADPPPRTFRWKFNNSGE 507

Query:   266 TAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGECEHP 325
             T       +S+ +GS S+ +YTP ++ +YGTL CWA NE G+Q+ PC F VV A     P
Sbjct:   508 TLDVGSERFSV-NGSRSILKYTPVTDQDYGTLSCWASNEVGTQQHPCLFQVVLAAL---P 563

Query:   326 VAVSH 330
              AVS+
Sbjct:   564 NAVSN 568

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0086604 CG12484 [Drosophila melanogaster (taxid:7227)]

 Score = 436 (158.5 bits), Expect = 8.5e-40, P = 8.5e-40
 Identities = 111/311 (35%), Positives = 162/311 (52%)

Query:    16 QSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-SYSIQDGS--TSVA 72
             Q + R   A  + Q+  SC V     A   TW     G+ P   T   +  DG+  TSV 
Sbjct:   284 QGENRALSAGNSYQL--SCVVIGARPAPTITWW---KGSTPMKNTHEIATPDGNLTTSVL 338

Query:    73 RYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVL 132
              +TPT + + G  L   R EQ     P +   ++ G        P V ++LG N   S L
Sbjct:   339 TFTPTID-DRGKFLS-CRAEQS--MIPESG--MEDGWKLDIYHIPVVSLELGTNSLNSTL 392

Query:   133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYAC 192
              EG+D++F+C+I++NP   ++ W HNG  ++NN + G  ++NQ+LVLQ+ +R   G+Y C
Sbjct:   393 REGIDVFFECNIKSNPWIYEVSWRHNGKILTNNPAEGIAVSNQSLVLQNASRARSGIYTC 452

Query:   193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252
                N +G+G S P  L+I       F     PVC+  Q+  Y + R+E V V+C +DANP
Sbjct:   453 VGSNREGDGESNPVQLDIR------F----APVCRPRQRLSYSSGRHETVKVACEIDANP 502

Query:   253 QAQYFTWAFN--NSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT 310
                 + W FN    +T   P +  ++  G  S+A YTP +E +YGTLLCWA NE G Q  
Sbjct:   503 AEATYVWKFNATQGETVDIPASQVAVDRGR-SIAHYTPMTENDYGTLLCWATNEIGDQSE 561

Query:   311 PCTFHVVKAGE 321
             PC + +  AGE
Sbjct:   562 PCVYTIFPAGE 572

GO:0005886 "plasma membrane" evidence=ISS

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0016061 side "sidestep" [Drosophila melanogaster (taxid:7227)]

 Score = 266 (98.7 bits), Expect = 3.3e-21, P = 3.3e-21
 Identities = 68/219 (31%), Positives = 102/219 (46%)

Query:   117 PSVQIKLGRNLNASVLN--EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN 174
             P+V + L     + ++   EG ++ F C   A PP     W  NG+ +S  ++       
Sbjct:   423 PTVSVHLANEDPSRLVTRAEGQNVTFKCRADARPPVTSYSWFKNGMRMSGEST------- 475

Query:   175 QTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQ-SQQRI 233
             + + L  + R S G Y+C A N++GE  S+   L +       F+    P CK  ++Q  
Sbjct:   476 EIMHLTQLERESAGAYSCGATNTEGETRSSSLTLKVQ------FS----PRCKSGTEQTS 525

Query:   234 YGALRNEQVLVSCTVDANP-QAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL 292
              GA+    +LV C VDA+P  +  F+W +NN+      L S    +G  S   Y P ++ 
Sbjct:   526 IGAVSLHSILVKCEVDADPPDSVRFSWTYNNTRNVSPVLNSRIQSNGLASTVTYLPQTDS 585

Query:   293 EYGTLLCWARNEQGSQRTPCTFHVVKAGECEHPVAVSHR 331
             E  TL CWA N  G Q TPC  H++ A   E P A   R
Sbjct:   586 ELITLACWASNAVGRQTTPCLVHILPANTPEAPKACELR 624

GO:0008045 "motor neuron axon guidance" evidence=IMP

UNIPROTKB|F1PGE1 MDGA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 80/309 (25%), Positives = 123/309 (39%)

Query:    10 DEPVCK--QSQQRIYGALRNEQ-VLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYS 63
             DEPV    Q+   + G    E+ V + CTV++NP A+ F W   +   S +    +  Y 
Sbjct:   130 DEPVLTVHQTVSDVRGNFYQEKTVFLRCTVNSNPPAR-FIWKRGSDTLSHSQDNGVDIYE 188

Query:    64 --IQDGSTSVARYTPTSELEYGTLLCWA--RNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
                  G T V +       +Y +  C    RN  G      TF +        P   P++
Sbjct:   189 PLYTQGETKVLKLKNLRPQDYASYTCQVSVRNVCGIPDKAITFRLTNTTA---P---PAL 242

Query:   120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVL 179
             ++ +   L   V+N G ++   C +    P  +L W+H           G +  + TL +
Sbjct:   243 KLSVNETL---VVNPGENVTVQCLLTGGDPLPQLQWSHG----PGPLPLGALAQSGTLSI 295

Query:   180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
              SV     G Y C+A N+ G       +L +  M N  F  I   V K+S+    G    
Sbjct:   296 PSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSMKNATFQ-ITPDVIKESENIQLG---- 350

Query:   240 EQVLVSCTVDANPQAQY-FTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL------ 292
             + + +SC VDA PQ +  + W F N   A R      +      +   T + EL      
Sbjct:   351 QDLKLSCHVDAVPQEKVTYQW-FKNGKPA-RMSKRLLVTRNDPELPAVTSSLELIDLHFS 408

Query:   293 EYGTLLCWA 301
             +YGT LC A
Sbjct:   409 DYGTYLCVA 417

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1RVR8 MDGA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 80/309 (25%), Positives = 122/309 (39%)

Query:    10 DEPVCK--QSQQRIYGALRNEQ-VLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYS 63
             DEPV    Q+   + G    E+ V + CTV++NP A+ F W   +   S +    +  Y 
Sbjct:   108 DEPVLTVHQTVSDVRGNFYQEKTVFLRCTVNSNPPAR-FIWKRGSDTLSHSQDNGVDIYE 166

Query:    64 --IQDGSTSVARYTPTSELEYGTLLCWA--RNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
                  G T V +       +Y +  C    RN  G      TF +        P   P++
Sbjct:   167 PLYTQGETKVLKLKNLRPQDYASYTCQVSVRNVCGIPDKAVTFRLTNTTA---P---PAL 220

Query:   120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVL 179
             ++ +   L   V+N G ++   C +    P  +L W+H           G +    TL +
Sbjct:   221 KLSVNETL---VVNPGENVTVQCLLTGGDPLPQLQWSHG----PGPLPLGALAQGGTLSI 273

Query:   180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
              SV     G Y C+A N+ G       +L +  M N  F  I   V K+S+    G    
Sbjct:   274 PSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSMKNATFQ-ITPDVIKESENIQLG---- 328

Query:   240 EQVLVSCTVDANPQAQY-FTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL------ 292
             + + +SC VDA PQ +  + W F N   A R      +      +   T + EL      
Sbjct:   329 QDLKLSCHVDAVPQEKVTYQW-FKNGKPA-RMSKRLLVTRNDPELPAVTSSLELIDLHFS 386

Query:   293 EYGTLLCWA 301
             +YGT LC A
Sbjct:   387 DYGTYLCVA 395

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q8NFP4 MDGA1 "MAM domain-containing glycosylphosphatidylinositol anchor protein 1" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 79/309 (25%), Positives = 122/309 (39%)

Query:    10 DEPVCK--QSQQRIYGALRNEQ-VLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYS 63
             DEP+    Q+   + G    E+ V + CTV++NP A+ F W   +   S +    +  Y 
Sbjct:   130 DEPMLTVHQTVSDVRGNFYQEKTVFLRCTVNSNPPAR-FIWKRGSDTLSHSQDNGVDIYE 188

Query:    64 --IQDGSTSVARYTPTSELEYGTLLCWA--RNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
                  G T V +       +Y +  C    RN  G      TF +        P   P++
Sbjct:   189 PLYTQGETKVLKLKNLRPQDYASYTCQVSVRNVCGIPDKAITFRLTNTTA---P---PAL 242

Query:   120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVL 179
             ++ +   L   V+N G ++   C +    P  +L W+H           G +    TL +
Sbjct:   243 KLSVNETL---VVNPGENVTVQCLLTGGDPLPQLQWSHG----PGPLPLGALAQGGTLSI 295

Query:   180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
              SV     G Y C+A N+ G       +L +  M N  F  I   V K+S+    G    
Sbjct:   296 PSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSMKNATFQ-ITPDVIKESENIQLG---- 350

Query:   240 EQVLVSCTVDANPQAQY-FTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL------ 292
             + + +SC VDA PQ +  + W F N   A R      +      +   T + EL      
Sbjct:   351 QDLKLSCHVDAVPQEKVTYQW-FKNGKPA-RMSKRLLVTRNDPELPAVTSSLELIDLHFS 408

Query:   293 EYGTLLCWA 301
             +YGT LC A
Sbjct:   409 DYGTYLCMA 417

GO:0001764 "neuron migration" evidence=ISS

GO:0046658 "anchored to plasma membrane" evidence=ISS;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0007420 "brain development" evidence=ISS

GO:0021527 "spinal cord association neuron differentiation" evidence=ISS

UNIPROTKB|J3KNB7 MDGA1 "MAM domain-containing glycosylphosphatidylinositol anchor protein 1" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 79/309 (25%), Positives = 122/309 (39%)

Query:    10 DEPVCK--QSQQRIYGALRNEQ-VLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYS 63
             DEP+    Q+   + G    E+ V + CTV++NP A+ F W   +   S +    +  Y 
Sbjct:   130 DEPMLTVHQTVSDVRGNFYQEKTVFLRCTVNSNPPAR-FIWKRGSDTLSHSQDNGVDIYE 188

Query:    64 --IQDGSTSVARYTPTSELEYGTLLCWA--RNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
                  G T V +       +Y +  C    RN  G      TF +        P   P++
Sbjct:   189 PLYTQGETKVLKLKNLRPQDYASYTCQVSVRNVCGIPDKAITFRLTNTTA---P---PAL 242

Query:   120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVL 179
             ++ +   L   V+N G ++   C +    P  +L W+H           G +    TL +
Sbjct:   243 KLSVNETL---VVNPGENVTVQCLLTGGDPLPQLQWSHG----PGPLPLGALAQGGTLSI 295

Query:   180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
              SV     G Y C+A N+ G       +L +  M N  F  I   V K+S+    G    
Sbjct:   296 PSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSMKNATFQ-ITPDVIKESENIQLG---- 350

Query:   240 EQVLVSCTVDANPQAQY-FTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL------ 292
             + + +SC VDA PQ +  + W F N   A R      +      +   T + EL      
Sbjct:   351 QDLKLSCHVDAVPQEKVTYQW-FKNGKPA-RMSKRLLVTRNDPELPAVTSSLELIDLHFS 408

Query:   293 EYGTLLCWA 301
             +YGT LC A
Sbjct:   409 DYGTYLCMA 417

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1922012 Mdga1 "MAM domain containing glycosylphosphatidylinositol anchor 1" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 5.6e-10, P = 5.6e-10
 Identities = 78/309 (25%), Positives = 121/309 (39%)

Query:    10 DEPVCK--QSQQRIYGALRNEQ-VLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYS 63
             DEPV    Q+   + G    E+ V + CTV +NP A+ F W   +   S +    +  Y 
Sbjct:   130 DEPVLTVHQTVSDVRGNFYQEKTVFLRCTVSSNPPAR-FIWKRGSDTLSHSQDNGVDIYE 188

Query:    64 --IQDGSTSVARYTPTSELEYGTLLCWA--RNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
                  G T V +       +Y +  C    RN  G      TF +        P   P++
Sbjct:   189 PLYTQGETKVLKLKNLRPQDYASYTCQVSVRNVCGIPDKAITFQLTNTTA---P---PAL 242

Query:   120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVL 179
             ++ +   L   V+N G ++   C +    P  +L W+H           G +    TL +
Sbjct:   243 KLSVNETL---VVNPGENVTVQCLLTGGDPLPQLHWSHG----PGPLPLGALAQGGTLSI 295

Query:   180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
              SV     G Y C+A N+ G       +L +  + N  F  I   + K+S+    G    
Sbjct:   296 PSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSLKNATFQ-ITPDMIKESENIQLG---- 350

Query:   240 EQVLVSCTVDANPQAQY-FTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL------ 292
             + + +SC VDA PQ +  + W F N   A R      +      +   T + EL      
Sbjct:   351 QDLKLSCHVDAVPQEKVNYQW-FKNGKPA-RTSKRLLVTRNDPELPAVTSSLELIDLHFS 408

Query:   293 EYGTLLCWA 301
             +YGT LC A
Sbjct:   409 DYGTYLCMA 417

GO:0001764 "neuron migration" evidence=IMP;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0045121 "membrane raft" evidence=ISO

GO:0046658 "anchored to plasma membrane" evidence=ISO

UNIPROTKB|F1MHX8 MDGA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 7.5e-10, P = 7.5e-10
 Identities = 79/309 (25%), Positives = 122/309 (39%)

Query:    10 DEPVCK--QSQQRIYGALRNEQ-VLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYS 63
             DEPV    Q+   + G    E+ V + CTV++NP A+ F W   +   S +    +  Y 
Sbjct:   130 DEPVLTVHQTVSDVRGNFYQEKTVFLRCTVNSNPPAR-FIWKRGSDTLSHSQDNGVDIYE 188

Query:    64 --IQDGSTSVARYTPTSELEYGTLLCWA--RNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
                  G T V +       +Y +  C    RN  G      +F +        P   P++
Sbjct:   189 PLYTQGETKVLKLKNLRPQDYASYSCQVSVRNVCGIPDKAVSFQLTNTTA---P---PAL 242

Query:   120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVL 179
             ++ +   L   V+N G ++   C +    P  +L W+H           G +    TL +
Sbjct:   243 KLSVNETL---VVNPGENVTVQCLLTGGDPLPQLQWSHG----PGPLPLGALAQGGTLSI 295

Query:   180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
              SV     G Y C+A N+ G       +L +  M N  F  I   V K+S+    G    
Sbjct:   296 PSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSMKNATFQ-ITPDVIKESENIQLG---- 350

Query:   240 EQVLVSCTVDANPQAQY-FTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL------ 292
             + + +SC VDA PQ +  + W F N   A R      +      +   T + EL      
Sbjct:   351 QDLKLSCHVDAVPQEKVTYQW-FKNGKPA-RMSKRLLVTRNDPELPAVTSSLELIDLHFS 408

Query:   293 EYGTLLCWA 301
             +YGT LC A
Sbjct:   409 DYGTYLCVA 417

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|D4AC96 Mdga1 "MAM domain-containing glycosylphosphatidylinositol anchor protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 9.4e-10, P = 9.4e-10
 Identities = 78/309 (25%), Positives = 121/309 (39%)

Query:    10 DEPVCK--QSQQRIYGALRNEQ-VLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYS 63
             DEPV    Q+   + G    E+ V + CTV +NP A+ F W   +   S +    +  Y 
Sbjct:   130 DEPVLTVHQTVSDVRGNFYQEKTVFLRCTVSSNPPAR-FIWKRGSDTLSHSQDNGVDIYE 188

Query:    64 --IQDGSTSVARYTPTSELEYGTLLCWA--RNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
                  G T V +       +Y +  C    RN  G      TF +        P   P++
Sbjct:   189 PLYTQGETKVLKLKNLRPQDYASYTCQVSVRNVCGIPDKSITFQLTNTTA---P---PTL 242

Query:   120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVL 179
             ++ +   L   V+N G ++   C +    P  +L W+H           G +    TL +
Sbjct:   243 KLSVNETL---VVNPGENVTVQCLLTGGDPLPQLHWSHG----PGPLPLGALAQGGTLSI 295

Query:   180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
              SV     G Y C+A N+ G       +L +  + N  F  I   + K+S+    G    
Sbjct:   296 PSVQARDSGYYNCTATNNVGNPAKKTVNLLVRSLKNATFQ-ITPDMIKESENIQLG---- 350

Query:   240 EQVLVSCTVDANPQAQY-FTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL------ 292
             + + +SC VDA PQ +  + W F N   A R      +      +   T + EL      
Sbjct:   351 QDLKLSCHVDAVPQEKVNYQW-FKNGKPA-RTSKRLLVTRNDPELPAVTSSLELIDLHFS 408

Query:   293 EYGTLLCWA 301
             +YGT LC A
Sbjct:   409 DYGTYLCVA 417

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	365
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	7e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	5e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	6e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	0.001
smart00410	85	smart00410, IG_like, Immunoglobulin like	0.004
smart00409	85	smart00409, IG, Immunoglobulin	0.004

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 46.3 bits (110), Expect = 7e-07
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 127 LNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS 186
            + +V+ EG D+   C    NPP     W  +G+ +S++ +             +V+   
Sbjct: 6   PSPTVVFEGEDVTLTCSAPGNPPPN-YTWYKDGVPLSSSQNG--------FFTPNVSAED 56

Query: 187 GGLYACSAINSQGEGGSTPFDLNI 210
            G Y C A N  G   S P  L +
Sbjct: 57  SGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS 193
           EG  +   C  + NP    + W  +G  +    S   + +  TL ++SV+    GLY C 
Sbjct: 1   EGQSVTLTCPAEGNPVPN-ITWLKDGKPL--PESNRFVASGSTLTIKSVSLEDSGLYTCV 57

Query: 194 AINSQG 199
           A NS G
Sbjct: 58  AENSAG 63

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ---TLVLQSVTRHSG 187
            + EG    F C +  +P    + W  +G  + ++    ++       TL + +V     
Sbjct: 11  EVQEGESARFTCTVTGDPD-PTVSWFKDGQPLRSS-DRFKVTYEGGTYTLTISNVQPDDE 68

Query: 188 GLYACSAINSQGE 200
           G Y C A NS GE
Sbjct: 69  GKYTCVATNSAGE 81

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ------TLVLQSVTRHSGGLYACS 193
             C     PP   + W  NG  + ++       +        TL + +VT    G Y C 
Sbjct: 3   LTCLASGPPPPT-ITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 194 AINSQGEGGST 204
           A NS G   ++
Sbjct: 62  ASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI--ITNQTLVLQSVTRHSGGLYAC 192
           G D+  +C  +A P    + W+     ++N+    RI    + +L + +VT+   G Y C
Sbjct: 1   GGDVIIECKPKAAPK-PTISWSKGTELLTNS---SRICIWPDGSLEILNVTKSDEGKYTC 56

Query: 193 SAINSQGEGGST 204
            A N  G+  ST
Sbjct: 57  FAENFFGKANST 68

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNG---ITISNNASAGRIITNQTLVLQSVTRHSGGL 189
            EG  +   C    +PP + + W   G   +  S   S  R  +  TL + +VT    G 
Sbjct: 7   KEGESVTLSCEASGSPPPE-VTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGT 65

Query: 190 YACSAINSQGE 200
           Y C+A NS G 
Sbjct: 66  YTCAATNSSGS 76

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNG---ITISNNASAGRIITNQTLVLQSVTRHSGGL 189
            EG  +   C    +PP + + W   G   +  S   S  R  +  TL + +VT    G 
Sbjct: 7   KEGESVTLSCEASGSPPPE-VTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGT 65

Query: 190 YACSAINSQGE 200
           Y C+A NS G 
Sbjct: 66  YTCAATNSSGS 76

Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		99.98
KOG4194|consensus	873		99.96
PHA02785	326	IL-beta-binding protein; Provisional	99.96
KOG4222|consensus	1281		99.94
KOG4221|consensus	1381		99.93
KOG4222|consensus	1281		99.92
PHA02826	227	IL-1 receptor-like protein; Provisional	99.83
KOG4194|consensus	873		99.82
PHA02826	227	IL-1 receptor-like protein; Provisional	99.78
PHA02785	326	IL-beta-binding protein; Provisional	99.74
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.58
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.57
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.56
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.53
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.52
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.51
KOG3515|consensus	741		99.51
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.51
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.5
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.49
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.49
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.49
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.49
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.48
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.48
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.47
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.47
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.47
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.47
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.46
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.45
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.45
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.45
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.44
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.44
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.44
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.44
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.43
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.43
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.43
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.43
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.42
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.42
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.42
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.42
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.42
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.42
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.42
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.42
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.42
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.42
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.42
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.41
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.41
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.41
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.41
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.4
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.4
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.4
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.4
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.39
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.39
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.39
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.39
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.38
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.38
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.38
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.38
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.38
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.37
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.37
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.37
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.37
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.37
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.37
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.37
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.37
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.37
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.37
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.37
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.36
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.36
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.36
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.36
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.36
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.35
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.35
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.35
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.35
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.34
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.34
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.33
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.33
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.33
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.33
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.33
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.32
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.32
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.32
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.32
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.32
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.31
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.31
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.31
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.31
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.3
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.3
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.3
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.29
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.29
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.29
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.29
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.29
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.29
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.28
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.28
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.28
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.27
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.27
KOG3515|consensus	741		99.27
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.27
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.27
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.27
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.26
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.26
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.26
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.26
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.26
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.26
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.26
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.26
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.26
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.26
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.25
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.25
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.25
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.25
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.25
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.24
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.24
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.24
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.24
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.24
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.23
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.23
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.23
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.22
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.22
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.22
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.22
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.21
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.21
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.21
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.2
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.2
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.2
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.19
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.19
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.19
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.18
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.18
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.18
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.17
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.17
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.17
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.16
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.16
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.16
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.15
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.15
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.14
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.14
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.14
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.14
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.13
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.12
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.12
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.12
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.12
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.08
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.08
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.08
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.07
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.06
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.04
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.03
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.03
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.99
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.99
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.98
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.98
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.97
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.97
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.96
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.96
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.96
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.95
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.94
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.93
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.92
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.92
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.92
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.9
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.89
smart00409	86	IG Immunoglobulin.	98.89
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.88
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.87
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.85
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.85
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.84
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.83
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.82
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.81
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.81
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.78
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.77
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.76
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.74
smart00409	86	IG Immunoglobulin.	98.74
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.72
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.7
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.67
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.67
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.67
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.65
PHA03376	221	BARF1; Provisional	98.64
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.63
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.6
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.59
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.58
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.57
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.57
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.56
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.55
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.54
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.54
PHA03376	221	BARF1; Provisional	98.52
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.47
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.46
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.45
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.44
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.42
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.42
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.42
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.41
PHA03270	466	envelope glycoprotein C; Provisional	98.4
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.39
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.39
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.39
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.38
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.38
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.38
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.38
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.37
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.36
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.36
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.35
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.35
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.35
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.34
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.33
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.32
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.31
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.31
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.29
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.29
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.28
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.27
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.23
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.22
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.22
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.21
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.21
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.21
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.19
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.17
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.17
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.17
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.17
PHA03269	566	envelope glycoprotein C; Provisional	98.16
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.15
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.15
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.14
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.13
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.13
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.12
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.12
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.11
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.11
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.1
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.1
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.08
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.06
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.06
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.05
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.04
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.03
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.03
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.99
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.98
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.97
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.96
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.96
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.94
PHA03271	490	envelope glycoprotein C; Provisional	97.93
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.93
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.92
PHA03273	486	envelope glycoprotein C; Provisional	97.91
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.89
smart00407	75	IGc1 Immunoglobulin C-Type.	97.88
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.87
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.85
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.84
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.83
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.82
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.82
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.8
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.79
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.78
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.77
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.74
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.74
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.72
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.72
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.71
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.71
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.69
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.69
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.68
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.67
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.67
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.66
smart00407	75	IGc1 Immunoglobulin C-Type.	97.62
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.58
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.58
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.58
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.54
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.53
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.52
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.5
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.5
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.48
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.47
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.45
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.44
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.42
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.41
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.39
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.37
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.36
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.28
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.27
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.27
smart00406	81	IGv Immunoglobulin V-Type.	97.21
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.16
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.16
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.14
KOG1480|consensus	909		97.14
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.12
smart00406	81	IGv Immunoglobulin V-Type.	97.12
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.02
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.96
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.92
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.88
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.88
PHA03269	566	envelope glycoprotein C; Provisional	96.8
PHA02633	63	hypothetical protein; Provisional	96.8
PHA02982	251	hypothetical protein; Provisional	96.78
PHA02982	251	hypothetical protein; Provisional	96.76
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.72
KOG0613|consensus	1205		96.68
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.62
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.43
PHA03270	466	envelope glycoprotein C; Provisional	96.39
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.38
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.37
PHA02633	63	hypothetical protein; Provisional	96.3
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.27
KOG1480|consensus	909		96.05
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.95
PHA03271	490	envelope glycoprotein C; Provisional	95.89
PHA03273	486	envelope glycoprotein C; Provisional	95.87
PHA03042	286	CD47-like protein; Provisional	95.62
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.46
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	95.24
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.04
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.98
PHA03042	286	CD47-like protein; Provisional	94.16
PHA02914	500	Immunoglobulin-like domain protein; Provisional	94.11
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	94.07
KOG4597|consensus	560		93.5
PHA02865	338	MHC-like TNF binding protein; Provisional	92.54
KOG4597|consensus	560		92.34
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	92.09
PHA02865	338	MHC-like TNF binding protein; Provisional	90.77
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	90.45
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	90.42
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	90.35
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	90.11
KOG0613|consensus	1205		88.6
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	87.92
PHA03283	542	envelope glycoprotein E; Provisional	87.49
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	85.12
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	84.25
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	84.16
PHA03112	141	IL-18 binding protein; Provisional	84.05
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	83.09
PHA03286	492	envelope glycoprotein E; Provisional	82.54
PHA03283	542	envelope glycoprotein E; Provisional	81.02
PHA03282	540	envelope glycoprotein E; Provisional	80.56

>KOG3513|consensus

Probab=100.00  E-value=7.3e-39  Score=304.55  Aligned_cols=280  Identities=20%  Similarity=0.308  Sum_probs=235.2

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      -.|+|.+....+.......|+.+.|.|.+.|+|.| ++.|+|.+.. .............   +|.|.+++.+|+|.|+|
T Consensus       237 ~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P-~i~W~k~~g~-~~~~r~~~~~~~~---vL~I~nv~~~D~G~Y~C  311 (1051)
T KOG3513|consen  237 REYAPKILVPFPETETALKGQSVKLECFALGNPTP-QIKWRKVDGK-PPPRRATYSNYGK---VLKIPNVQYEDAGEYEC  311 (1051)
T ss_pred             cccCCccccCCCCcccccCCCeEEEEEEecCCCCC-cEEEEeCCCC-CCCcceeeecccc---EEEecccCcCCCeEEEE
Confidence            56788887777767778999999999999999999 9999999885 3322222222233   89999999999999999


Q ss_pred             EEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC
Q psy3823          88 WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS  167 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~  167 (365)
                      .|.|..|.....+.|+|         ..+|.....+    .+..+..|++++|.|.+.|.|.|. ++|++||.++.....
T Consensus       312 ~AeN~~G~~~~~~~v~v---------~a~P~w~~~~----~d~~~~~gs~v~~eC~a~g~P~p~-v~WlkNg~pl~~~~r  377 (1051)
T KOG3513|consen  312 IAENSRGSATHSGHVTV---------YAPPYWLQKP----QDTEADTGSNVTLECKASGKPNPT-VKWLKNGEPLEPAER  377 (1051)
T ss_pred             EEecccccceeeEEEEE---------ecCchhhccc----ceeEecCCCCeEEEEEecCCCCCc-eEEeeCCeecCccCC
Confidence            99999997779999999         7788755543    455788899999999999999999 999999999985443


Q ss_pred             -CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCc-cceeeeecCceEEEE
Q psy3823         168 -AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQ-QRIYGALRNEQVLVS  245 (365)
Q Consensus       168 -~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~~l~  245 (365)
                       .+....+++|.|.+++..|+|.|+|.|.|..|... ..+.|+|+.         .+|.+...+ ...+.+..|..+.|.
T Consensus       378 ~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~-anA~L~V~a---------~~P~f~~~p~~~~~~a~~g~~v~i~  447 (1051)
T KOG3513|consen  378 DPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIY-ANAELKVLA---------SAPVFPLNPVERKVMAVVGGTVTID  447 (1051)
T ss_pred             CcceEEeCCEEEEEecccccCeEEEeeeecccceEe-eeeEEEEEc---------cCCCCCCCccceEEEEEeCCeEEEe
Confidence             34667789999999999999999999999999887 678999984         457766544 444558899999999


Q ss_pred             EEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc
Q psy3823         246 CTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE  321 (365)
Q Consensus       246 C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  321 (365)
                      |...+.|.|. +.|.+.+. ...+..+..+..+|+   |.|.+++.+|+|.|+|.|.|..|.+.....|.|..+++
T Consensus       448 C~~~asP~p~-~~W~k~~~-~~~~~~r~~i~edGt---L~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tr  518 (1051)
T KOG3513|consen  448 CKPFASPKPK-VSWLKGGE-KLLQSGRIRILEDGT---LEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATR  518 (1051)
T ss_pred             eccCCCCcce-EEEEcCCc-ccccCceEEECCCCc---EEecccCcccCcEEEEEEEcccCccceEEEEEEecCce
Confidence            9999999998 99999887 556666777778886   99999999999999999999999999999998876665

>KOG3513|consensus

Probab=100.00  E-value=6.6e-32  Score=257.36  Aligned_cols=316  Identities=22%  Similarity=0.302  Sum_probs=246.9

Q ss_pred             eEEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-e-eEecCCeEEEEEEccCCCC
Q psy3823           3 NLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-S-YSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus         3 ~~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-~-~~~~~~~~~~l~i~~~~~~   80 (365)
                      -+.+.+.++|.+.. ......+..|++++|.|.+.+.|.+ .|+|++|+.. +..... - ....++   .|+|.+++..
T Consensus       323 ~~~v~v~a~P~w~~-~~~d~~~~~gs~v~~eC~a~g~P~p-~v~WlkNg~p-l~~~~r~~~~~i~~g---~L~is~v~~~  396 (1051)
T KOG3513|consen  323 SGHVTVYAPPYWLQ-KPQDTEADTGSNVTLECKASGKPNP-TVKWLKNGEP-LEPAERDPRYKIDDG---TLIISNVQES  396 (1051)
T ss_pred             eEEEEEecCchhhc-ccceeEecCCCCeEEEEEecCCCCC-ceEEeeCCee-cCccCCCcceEEeCC---EEEEEecccc
Confidence            35677788888765 4455667899999999999899999 9999999998 653333 1 223455   8999999999


Q ss_pred             CCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCe
Q psy3823          81 EYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGI  160 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~  160 (365)
                      |+|.|+|.|.|..|.....+.|.|.        ..+|.+...+..  ....+..|..+.|.|...+.|.+. +.|.+++.
T Consensus       397 dsg~YQC~A~Nk~G~i~anA~L~V~--------a~~P~f~~~p~~--~~~~a~~g~~v~i~C~~~asP~p~-~~W~k~~~  465 (1051)
T KOG3513|consen  397 DSGVYQCIAENKYGTIYANAELKVL--------ASAPVFPLNPVE--RKVMAVVGGTVTIDCKPFASPKPK-VSWLKGGE  465 (1051)
T ss_pred             cCeEEEeeeecccceEeeeeEEEEE--------ccCCCCCCCccc--eEEEEEeCCeEEEeeccCCCCcce-EEEEcCCc
Confidence            9999999999999999999999995        234555444333  223567899999999999999998 99999888


Q ss_pred             EEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCc
Q psy3823         161 TISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNE  240 (365)
Q Consensus       161 ~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~  240 (365)
                      .+. ......+..+++|.|.+++++|+|.|+|.|.|..|... ....|.|.          .++.+...+.. ..+..|+
T Consensus       466 ~~~-~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~-~~~~L~Vk----------d~tri~~~P~~-~~v~~g~  532 (1051)
T KOG3513|consen  466 KLL-QSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAE-STGNLIVK----------DATRITLAPSN-TDVKVGE  532 (1051)
T ss_pred             ccc-cCceEEECCCCcEEecccCcccCcEEEEEEEcccCccc-eEEEEEEe----------cCceEEeccch-hhhccCc
Confidence            333 23444556799999999999999999999999999988 68899999          88888874444 3489999


Q ss_pred             eEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCCceeE-eeCCC-EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         241 QVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPLTSYS-IQDGS-TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       241 ~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~~~~~-~~~~~-~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      .++|.|.+...+... .|.|.+||..........++ ..++. ...|.|.+++.+|+|.|.|.|.....+.+....+.|+
T Consensus       533 ~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~  612 (1051)
T KOG3513|consen  533 SVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVR  612 (1051)
T ss_pred             eEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEe
Confidence            999999998666544 59999999754443332222 11111 1459999999999999999999988888887777776


Q ss_pred             -cCcc--------c---------------------------------------------------cccCccccEEEEEEE
Q psy3823         318 -KAGE--------C---------------------------------------------------EHPVAVSHRYVAKLY  337 (365)
Q Consensus       318 -~~~~--------c---------------------------------------------------~~~l~~~~~~~~~~~  337 (365)
                       ++++        +                                                   .++|.|-..|+|||.
T Consensus       613 gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~  692 (1051)
T KOG3513|consen  613 GPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVV  692 (1051)
T ss_pred             cCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEE
Confidence             3333        0                                                   017999999999999


Q ss_pred             EEcCCCCCcee
Q psy3823         338 ATNAKGAGPMV  348 (365)
Q Consensus       338 ~~n~~g~s~~~  348 (365)
                      |+|..|+|+|.
T Consensus       693 AvN~iG~gePS  703 (1051)
T KOG3513|consen  693 AVNSIGIGEPS  703 (1051)
T ss_pred             EEcccccCCCC
Confidence            99999999864

>KOG4221|consensus

Probab=99.98  E-value=1.9e-30  Score=246.56  Aligned_cols=308  Identities=19%  Similarity=0.308  Sum_probs=241.5

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .+.....+..|+.+.|.|.+++.|.+ .+.|.+++.. +..........++   .|.|..++..|.|.|+|.+++...+.
T Consensus       145 ~~~~~~t~~~g~ta~f~c~vn~e~~p-~i~w~kn~~p-l~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r  219 (1381)
T KOG4221|consen  145 LQPESTTLLYGQTALFSCEVNAEPVP-TIMWLKNDQP-LPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQR  219 (1381)
T ss_pred             cCccceeEecCCcEEEEEEEcCccCc-eeEEeccccc-ccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCC
Confidence            45556778899999999999998888 9999999998 6666665666777   89999999999999999999877665


Q ss_pred             c-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeec
Q psy3823          97 R-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ  175 (365)
Q Consensus        97 ~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~  175 (365)
                      . ...+|+|.+...    ...-...+.-.   ....+.+|+++.|.|.+.+.|.|. |+|.+||..|............+
T Consensus       220 ~S~~a~ltv~s~~~----~~~~~~fl~~p---~~~~v~~g~~v~leCvvs~~p~p~-v~Wlrng~~i~~ds~rivl~g~~  291 (1381)
T KOG4221|consen  220 TSNEAELTVLSDPG----ALNKLVFLDEP---SNAVVVEGDDVVLECVVSGVPKPS-VKWLRNGEKISVDSYRIVLVGGS  291 (1381)
T ss_pred             ccceeEEEecCCcc----cccceeeecCC---CccccccCCcEEEEEEecCCCCCc-eEEeeCCeeeeecceEEEEeccc
Confidence            5 778888842100    00001111111   345788999999999999999998 99999999998765333344478


Q ss_pred             eEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCc
Q psy3823         176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ  255 (365)
Q Consensus       176 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  255 (365)
                      .|.|++++.+|+|.|+|+|.|...... +...|+|+          .+|.+...+...+ +.++.++.+.|.+.|.|.|.
T Consensus       292 slliS~a~~~dSg~YtC~Atn~~D~id-asaev~V~----------a~P~~~~~p~~l~-A~e~~die~ec~~~g~p~p~  359 (1381)
T KOG4221|consen  292 SLLISNATDDDSGKYTCRATNTNDSID-ASAEVTVL----------APPGFTKAPTTLV-AHESMDIEFECPVSGKPIPT  359 (1381)
T ss_pred             ceEEeccccccCceEEEEecCCCcccc-cceEEEEE----------cCCCCCCCCccee-eeeccceeEeCCCCCCCcce
Confidence            999999999999999999999655444 56789999          8898887666655 77799999999999999998


Q ss_pred             eeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc--------------
Q psy3823         256 YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE--------------  321 (365)
Q Consensus       256 ~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~--------------  321 (365)
                       +.|+++|..... .+.+++..++.   |.|..+-..|.|.|.|.+.|..|.+.....+.|.+.+-              
T Consensus       360 -v~w~kNgd~~ip-sdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~l  434 (1381)
T KOG4221|consen  360 -VRWYKNGDRIIP-SDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDL  434 (1381)
T ss_pred             -EEEEecCcccCc-ccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcce
Confidence             999999985544 55556555554   77777778999999999999999999988887765522              


Q ss_pred             -----------ccc----------------------------------------cCccccEEEEEEEEEcCCCCCc-eee
Q psy3823         322 -----------CEH----------------------------------------PVAVSHRYVAKLYATNAKGAGP-MVL  349 (365)
Q Consensus       322 -----------c~~----------------------------------------~l~~~~~~~~~~~~~n~~g~s~-~~~  349 (365)
                                 |+.                                        +|.|+..|.|+|.|.|..|++. .-.
T Consensus       435 v~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~p  514 (1381)
T KOG4221|consen  435 VANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAP  514 (1381)
T ss_pred             ecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCc
Confidence                       111                                        7999999999999999999776 344


Q ss_pred             eeece
Q psy3823         350 MKTNT  354 (365)
Q Consensus       350 ~~~~~  354 (365)
                      +++.|
T Consensus       515 LkV~t  519 (1381)
T KOG4221|consen  515 LKVTT  519 (1381)
T ss_pred             eEEec
Confidence            54444

>KOG4194|consensus

Probab=99.96  E-value=4.2e-28  Score=216.16  Aligned_cols=290  Identities=16%  Similarity=0.269  Sum_probs=218.5

Q ss_pred             CceEEEEecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCCCCCce------eEe-------cCCeEEEEEEccCCCCCCe
Q psy3823          18 QQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTS------YSI-------QDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~~~~------~~~-------~~~~~~~l~i~~~~~~d~G   83 (365)
                      ++....+..|+.++|+|.+.+ ...|..+.|.+++.. +......      ...       ...-...|.+.||+..|+|
T Consensus       509 qPe~~~al~g~nirftC~a~sssasplsi~WR~dnev-q~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~g  587 (873)
T KOG4194|consen  509 QPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEV-QPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEG  587 (873)
T ss_pred             CchHhhhhhccceEEEEEeccCCCCCceeEeeecccc-CcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCc
Confidence            344556778999999999443 345569999998875 4432211      001       1113357999999999999


Q ss_pred             EEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeE-
Q psy3823          84 TLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGIT-  161 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~-  161 (365)
                      .|+|+++|..|... ..+.|+|         ...|.+.-.|    .+.++..|+.+.|.|.+.|.|.|. |.|-++|.. 
T Consensus       588 rYQCVvtN~FGStysqk~KltV---------~~~PsFtktP----~dltl~tg~mArl~CaAtG~P~Pe-Iawqkdggtd  653 (873)
T KOG4194|consen  588 RYQCVVTNHFGSTYSQKAKLTV---------NQAPSFTKTP----EDLTLRTGQMARLECAATGHPRPE-IAWQKDGGTD  653 (873)
T ss_pred             eEEEEEecccCcchhheeEEEe---------eccCccccCc----ccceeecccceeeeeeccCCCCcc-eeehhcCCCC
Confidence            99999999999876 8889998         6777766555    456889999999999999999999 999987665 


Q ss_pred             EeeCCCCceE--EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecC
Q psy3823         162 ISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN  239 (365)
Q Consensus       162 l~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g  239 (365)
                      .+.....+..  ..+..+.|.++..+|+|.|+|.|.|..|... ..++|.|.          ..|.+..+..... +..|
T Consensus       654 FPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~is-anAtL~V~----------e~p~f~~PL~~~~-V~~g  721 (873)
T KOG4194|consen  654 FPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQIS-ANATLTVL----------ETPSFSIPLEDQL-VVVG  721 (873)
T ss_pred             CchhhhheeeecCCCCEEEEecccccccceeEEeeecccccee-eceEEEEe----------cCCcccccccceE-EEec
Confidence            6655544433  3477899999999999999999999999776 78899999          7887776654433 8899


Q ss_pred             ceEEEEEEEeeeCC-CceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         240 EQVLVSCTVDANPQ-AQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       240 ~~~~l~C~~~~~p~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      +++.|.|.+.+.|. |. +.|++++++... ..+..+ .+ ....|.+.+...+|+|.|+|...|..|.....+.+.+..
T Consensus       722 et~vlqC~a~~~~a~pr-~~W~k~d~pil~-t~rh~f-~d-~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~  797 (873)
T KOG4194|consen  722 ETLVLQCLAEGAPADPR-LEWFKEDKPILI-TERHTF-PD-GDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ  797 (873)
T ss_pred             ceEEEEEecCCCCCCcc-ccccCCCCceEE-eecccC-CC-CCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence            99999999999887 76 999998775432 222222 22 234588899999999999999999999988888887777


Q ss_pred             CccccccCccc-cEEEEEEEEE
Q psy3823         319 AGECEHPVAVS-HRYVAKLYAT  339 (365)
Q Consensus       319 ~~~c~~~l~~~-~~~~~~~~~~  339 (365)
                      ...|-.+ +.| ++-..+..|+
T Consensus       798 ~~~~~~S-e~~~Tq~~~riia~  818 (873)
T KOG4194|consen  798 KKKCRMS-EDGSTQVGIRIIAV  818 (873)
T ss_pred             cCCcccc-cCCccEEEEEEEEE
Confidence            7667665 333 3444444443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.96  E-value=3.2e-27  Score=209.04  Aligned_cols=259  Identities=17%  Similarity=0.247  Sum_probs=173.7

Q ss_pred             eEEEEecCCcEEEEEEe-----CCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          20 RIYGALRNEQVLVSCTV-----DANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~-----~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ..+.+.+|+.+.|.|.+     .+.|.+ .++|+|++.. ...   .....++  ..|.|.++..+|+|.|+|.++|..+
T Consensus        34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~-~i~W~K~g~~-~~~---~~~~~~g--~~l~i~~~~~~DsG~Y~C~a~N~~g  106 (326)
T PHA02785         34 ASFMELENEPVILPCPQINTLSSGYNIL-DILWEKRGAD-NDR---IIPIDNG--SNMLILNPTQSDSGIYICITKNETY  106 (326)
T ss_pred             chhhhhcCCCEEEECCCccccccCCCCc-eEEEEECCCc-cce---EEEccCC--ceEEEcccCcccCeEEEEEEECCCc
Confidence            45556789999999985     578888 9999999754 321   1111222  2577999999999999999999988


Q ss_pred             CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE-----EecCCCCeeEEEeCCeEEeeCCCCc
Q psy3823          95 NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-----QANPPYKKLIWTHNGITISNNASAG  169 (365)
Q Consensus        95 ~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~-----~~~p~~~~i~W~~~~~~l~~~~~~~  169 (365)
                      ....++.|+|...       .+|.+...+    .+..+.+|..+.|.|..     .+.+++. ++|++++. +.  ....
T Consensus       107 ~~~~s~~L~V~~~-------~~~~~~~~~----~~~~~~~g~~~~i~C~~~~~~~~~~~~~~-i~W~k~~~-~~--~~r~  171 (326)
T PHA02785        107 CDMMSLNLTIVSV-------SESNIDLIS----YPQIVNERSTGEMVCPNINAFIASNVNAD-IIWSGHRR-LR--NKRL  171 (326)
T ss_pred             ceEEEEEEEEEec-------CCCccceee----ccceecccCcEEEECCChhhcccCCCCce-EEEccCCc-cC--Ccce
Confidence            7777888888422       112221111    22346789999999962     3456666 99998642 21  1111


Q ss_pred             eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC---cccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEE
Q psy3823         170 RIITNQTLVLQSVTRHSGGLYACSAINSQGEGG---STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSC  246 (365)
Q Consensus       170 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~---s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  246 (365)
                      ....++.|.|.+++.+|+|.|+|.+.|..+...   ...+.|.|..+       ..+|.+..+  ....+..|+.++|.|
T Consensus       172 ~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~-------~~pp~~~~p--~~~~~~~G~~v~L~C  242 (326)
T PHA02785        172 KQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDR-------IIPPTMQLP--EGVVTSIGSNLTIAC  242 (326)
T ss_pred             EecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEecc-------CCCceecCC--CcEEecCCCcEEEEE
Confidence            222357899999999999999999999877532   22344555411       134433322  223367799999999


Q ss_pred             EEeeeCCCc--eeEEEeCCCCCCCCC--C--ceeEee-----CC---CEEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823         247 TVDANPQAQ--YFTWAFNNSDTAPRP--L--TSYSIQ-----DG---STSVARYTPTSELEYGTLLCWARNEQGSQR  309 (365)
Q Consensus       247 ~~~~~p~~~--~~~W~~~~~~~~~~~--~--~~~~~~-----~~---~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~  309 (365)
                      .+.+.|.+.  .+.|++||.......  .  +.....     ++   ....|.|.+++.+|+|.|+|.|.|..|.+.
T Consensus       243 ~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        243 RVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK  319 (326)
T ss_pred             EEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence            999988641  499999986432211  1  111111     11   145799999999999999999999986543

>KOG4222|consensus

Probab=99.94  E-value=7.4e-26  Score=214.39  Aligned_cols=304  Identities=18%  Similarity=0.247  Sum_probs=237.2

Q ss_pred             eCCceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCc--eeEecCCeEEEEEEccCCCCCCeEEEEEEEeC
Q psy3823          16 QSQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLT--SYSIQDGSTSVARYTPTSELEYGTLLCWARNE   92 (365)
Q Consensus        16 ~~~~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~   92 (365)
                      ..+++...+..|+.+.|.|. ..+.|.+ .+.|.|+++. +.....  ......+   .|.|.++...|.|+|.|+++|.
T Consensus       135 rv~prd~~~a~ge~avlEcgpP~ghpep-tvSw~Kdg~p-l~~~~~~~~~lisgG---~LlIsnvrksD~GtY~CVatNm  209 (1281)
T KOG4222|consen  135 RVSPRDVQAAVGEEAVLECGPPRGHPEP-TVSWVKDGKP-LDHYDVPIIALISGG---NLLISNVRKSDEGTYACVATNM  209 (1281)
T ss_pred             ccCcccccccccceeEEeccCCCCCCCC-cceeecCCCc-cccccceeEEEecCC---cEEEeccccCCCceeeeeeccc
Confidence            35566777889999999999 8889999 9999999998 652222  2233555   7999999999999999999999


Q ss_pred             CCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceE
Q psy3823          93 QGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI  171 (365)
Q Consensus        93 ~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~  171 (365)
                      .|... ...+|+|         ..+|.+...+    .+..+..|..+.+.|.+.|.|.|. +.|-+++..+... +..+.
T Consensus       210 vG~ReS~~A~lsv---------~e~P~f~~rp----~~~~v~~g~~~~f~c~v~GdP~P~-Vrwkk~~~~~P~~-ry~i~  274 (1281)
T KOG4222|consen  210 VGERESIPARLSV---------QEKPWFWKRP----KDLAVLVGAAAEFDCRVGGDPQPT-VRWKKDDPSLPRS-RYSIL  274 (1281)
T ss_pred             ccccccccceeee---------ccCCcccccc----ccceeecccccccccccCCCCCCc-eeeeccCCCCCcc-ceeee
Confidence            99876 7788998         7788776665    445788999999999999999998 9999987777642 22344


Q ss_pred             EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee
Q psy3823         172 ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN  251 (365)
Q Consensus       172 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~  251 (365)
                      ..+.+|.|.+.+..|.|.|.|.+.|..|... ....++|.          .+|.+........ +..|..++|.|.+.|.
T Consensus       275 ~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~-asa~ltV~----------apP~f~kkp~dq~-v~lg~~vt~pc~~~gn  342 (1281)
T KOG4222|consen  275 DDTQTLRIDRVTPTDEGTYVCPAENLVGGLE-ASATLTVQ----------APPSFGKKPRDQK-VALGGTVTFPCETLGN  342 (1281)
T ss_pred             eccccccccccCCCcccceeeeccccccccc-cccceEEe----------cCcccccccCccc-cccCceEEeeeecCCC
Confidence            4568999999999999999999999999877 67789999          8888876554433 7789999999999999


Q ss_pred             CCCceeEEEeCCCCCCCCC-----C--ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE----c-C
Q psy3823         252 PQAQYFTWAFNNSDTAPRP-----L--TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV----K-A  319 (365)
Q Consensus       252 p~~~~~~W~~~~~~~~~~~-----~--~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~----~-~  319 (365)
                      |+|. +.|.+.|.......     .  +..+...+   .|.|.++...|.|.|.|...+..|.......+.+.    . .
T Consensus       343 P~Pa-vfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~r  418 (1281)
T KOG4222|consen  343 PPPA-VFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSR  418 (1281)
T ss_pred             CCcc-eEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEEEEeeeccCC
Confidence            9999 99999886554331     1  11222333   59999999999999999999988876655555443    1 1


Q ss_pred             cc---------------------cc-----------------c------------------cCccccEEEEEEEEEcCCC
Q psy3823         320 GE---------------------CE-----------------H------------------PVAVSHRYVAKLYATNAKG  343 (365)
Q Consensus       320 ~~---------------------c~-----------------~------------------~l~~~~~~~~~~~~~n~~g  343 (365)
                      ++                     |.                 +                  ++.-...+...+.|.+.+|
T Consensus       419 Ppp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~g  498 (1281)
T KOG4222|consen  419 PPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESG  498 (1281)
T ss_pred             CCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCccc
Confidence            22                     22                 1                  6777778888899999999


Q ss_pred             CCceeeeeecee
Q psy3823         344 AGPMVLMKTNTE  355 (365)
Q Consensus       344 ~s~~~~~~~~~~  355 (365)
                      .+.+.....+..
T Consensus       499 es~wSatl~v~~  510 (1281)
T KOG4222|consen  499 ESTWSATLTVEK  510 (1281)
T ss_pred             ccccceeeEhhh
Confidence            888766655543

>KOG4221|consensus

Probab=99.93  E-value=2.3e-24  Score=205.51  Aligned_cols=268  Identities=15%  Similarity=0.268  Sum_probs=195.6

Q ss_pred             ecCCcEEEEEEeCCC--CCcceEEEEeCCCcCCCCCCce--eEecCCeEEEEEEccCCC-----CCCeEEEEEEEeCCCC
Q psy3823          25 LRNEQVLVSCTVDAN--PQAQYFTWAFNNSGTAPRPLTS--YSIQDGSTSVARYTPTSE-----LEYGTLLCWARNEQGN   95 (365)
Q Consensus        25 ~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~l~~~~~~--~~~~~~~~~~l~i~~~~~-----~d~G~Y~C~a~~~~~~   95 (365)
                      .+|..+.|.|.....  +.+ .+.|.++|.. +......  ....++   +|-|.++..     -|+|.|+|.|......
T Consensus        52 ~~~~svlLecs~~~~~~~~~-~i~wkkDg~~-l~e~~d~~~~~LsNg---Sl~i~~v~~~kh~~~~eg~Yqc~atv~~~g  126 (1381)
T KOG4221|consen   52 MEGSSVLLECSAYAAGGTSV-KIEWKKDGSQ-LNEVYDDRRQLLSNG---SLYISSVLASKHNKVDEGVYQCLATVEDVG  126 (1381)
T ss_pred             ccccceEEeccccccCCCCe-eEEEccCchh-hhhhhhhHHhhccCC---ceeEeeecccccccccCceEEEEEEccccc
Confidence            899999999994333  356 9999999987 6544322  233566   566666655     6899999999876332


Q ss_pred             Cc--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe
Q psy3823          96 QR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT  173 (365)
Q Consensus        96 ~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~  173 (365)
                      .-  .++.|.+         ...+.+..++    .+..+..|+++.|.|.+.+.+-+. +.|.+|..++.... ..+...
T Consensus       127 si~Sr~a~v~~---------a~~~~f~~~~----~~~t~~~g~ta~f~c~vn~e~~p~-i~w~kn~~pl~~~~-r~i~lp  191 (1381)
T KOG4221|consen  127 SILSRTAKVAL---------AGLADFALQP----ESTTLLYGQTALFSCEVNAEPVPT-IMWLKNDQPLPLDS-RVIVLP  191 (1381)
T ss_pred             eeecceEEEEe---------cccCccccCc----cceeEecCCcEEEEEEEcCccCce-eEEecccccccCCC-cEEEcC
Confidence            22  6666666         3444444444    335688999999999999977776 99999999887655 445566


Q ss_pred             eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC
Q psy3823         174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ  253 (365)
Q Consensus       174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  253 (365)
                      ++.|.|.+++..|.|.|+|.+.+......+..+.|+|. .++...+...   |...+ ....+..|+.+.|.|.+.+.|.
T Consensus       192 sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~-s~~~~~~~~~---fl~~p-~~~~v~~g~~v~leCvvs~~p~  266 (1381)
T KOG4221|consen  192 SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVL-SDPGALNKLV---FLDEP-SNAVVVEGDDVVLECVVSGVPK  266 (1381)
T ss_pred             CCcEEecccccCCCceEEEEEecCCcCCccceeEEEec-CCccccccee---eecCC-CccccccCCcEEEEEEecCCCC
Confidence            99999999999999999999999877666788889887 2221111111   22222 2233889999999999999999


Q ss_pred             CceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc
Q psy3823         254 AQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE  321 (365)
Q Consensus       254 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  321 (365)
                      |. +.|.+||.......  +++..-+. +.|.|.+++..|+|.|+|.|.|..-...+...|.|+.++.
T Consensus       267 p~-v~Wlrng~~i~~ds--~rivl~g~-~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~  330 (1381)
T KOG4221|consen  267 PS-VKWLRNGEKISVDS--YRIVLVGG-SSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPG  330 (1381)
T ss_pred             Cc-eEEeeCCeeeeecc--eEEEEecc-cceEEeccccccCceEEEEecCCCcccccceEEEEEcCCC
Confidence            98 99999886544333  33323222 2388999999999999999999777777788888887654

>KOG4222|consensus

Probab=99.92  E-value=2.3e-24  Score=204.41  Aligned_cols=305  Identities=19%  Similarity=0.297  Sum_probs=228.9

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+....+..|..+.|.|.+.+.|.+ .++|.+++.. +..........+.   +|.|.+++..|.|.|.|.+.|..|...
T Consensus       231 rp~~~~v~~g~~~~f~c~v~GdP~P-~Vrwkk~~~~-~P~~ry~i~~d~q---tl~i~r~tp~deg~y~C~a~n~vG~l~  305 (1281)
T KOG4222|consen  231 RPKDLAVLVGAAAEFDCRVGGDPQP-TVRWKKDDPS-LPRSRYSILDDTQ---TLRIDRVTPTDEGTYVCPAENLVGGLE  305 (1281)
T ss_pred             ccccceeecccccccccccCCCCCC-ceeeeccCCC-CCccceeeeeccc---cccccccCCCcccceeeeccccccccc
Confidence            3456677889999999999999999 9999998777 7766654443434   799999999999999999999999999


Q ss_pred             ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeE-Eee------CCCCce
Q psy3823          98 TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGIT-ISN------NASAGR  170 (365)
Q Consensus        98 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~-l~~------~~~~~~  170 (365)
                      ....++|         ..+|.+...+    .+..+..|..++|.|.+.|+|+|. +.|.+.|.. +-.      ...+..
T Consensus       306 asa~ltV---------~apP~f~kkp----~dq~v~lg~~vt~pc~~~gnP~Pa-vfW~keg~q~llf~~~p~~~~~r~s  371 (1281)
T KOG4222|consen  306 ASATLTV---------QAPPSFGKKP----RDQKVALGGTVTFPCETLGNPPPA-VFWLKEGSQDLLFSASPPSSNGRGS  371 (1281)
T ss_pred             cccceEE---------ecCccccccc----CccccccCceEEeeeecCCCCCcc-eEEeccCcceecccCCCCCcCccce
Confidence            8888888         6788776665    334577899999999999999999 999986543 321      112223


Q ss_pred             EEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCcee-cCccceeeeecCceEEEEEEEe
Q psy3823         171 IITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCK-QSQQRIYGALRNEQVLVSCTVD  249 (365)
Q Consensus       171 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~  249 (365)
                      +...++|+|.+++..|.|.|.|...+..+..........+..     .....+|.+. ....... ...+..+.|.|.+.
T Consensus       372 vs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~-----~~~~rPpp~i~~g~~nQt-l~v~s~a~l~c~at  445 (1281)
T KOG4222|consen  372 VSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV-----LTDSRPPPIIEQGPANQT-LPVGSTASLPCSAT  445 (1281)
T ss_pred             ecCCCCcccccccccccceEeecccccccccccceeEEEEee-----eccCCCCceeeecccccc-cccCcccccChhhh
Confidence            344679999999999999999998887775442222222210     0110122222 2222222 55688999999999


Q ss_pred             eeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc--------
Q psy3823         250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE--------  321 (365)
Q Consensus       250 ~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~--------  321 (365)
                      +.|.+. +.|.+++-.......+.....   ...|+|.+....|.|.|+|.+.+..|+..-++.|.|...+.        
T Consensus       446 g~P~p~-i~wl~dg~~v~~~d~~~s~~~---~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~  521 (1281)
T KOG4222|consen  446 GAPTPN-ISWLKDGCNVMNPDSRISQQE---IGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCE  521 (1281)
T ss_pred             CCCCCC-chhhhcccccccCCcccceee---eceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCC
Confidence            999999 999998875544332222222   23589999999999999999999999999999998875554        


Q ss_pred             ---------------------ccc--------------------------------------------cCccccEEEEEE
Q psy3823         322 ---------------------CEH--------------------------------------------PVAVSHRYVAKL  336 (365)
Q Consensus       322 ---------------------c~~--------------------------------------------~l~~~~~~~~~~  336 (365)
                                           |++                                            +|+|...|.|.|
T Consensus       522 D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~v  601 (1281)
T KOG4222|consen  522 DPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLV  601 (1281)
T ss_pred             ChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeee
Confidence                                 222                                            899999999999


Q ss_pred             EEEcCCCCCceeeee
Q psy3823         337 YATNAKGAGPMVLMK  351 (365)
Q Consensus       337 ~~~n~~g~s~~~~~~  351 (365)
                      .|.|..|.|++-.+.
T Consensus       602 Ra~n~~Gis~Ps~~S  616 (1281)
T KOG4222|consen  602 RAENEQGISDPSTSS  616 (1281)
T ss_pred             eccccccccCCcccC
Confidence            999999988765443

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.83  E-value=1.1e-19  Score=151.37  Aligned_cols=159  Identities=17%  Similarity=0.201  Sum_probs=112.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC-----------CcceEEEEeCCCcCC---CCCCc-----eeEecCCeEEEEEEccCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP-----------QAQYFTWAFNNSGTA---PRPLT-----SYSIQDGSTSVARYTPTSE   79 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p-----------~~~~v~W~~~~~~~l---~~~~~-----~~~~~~~~~~~l~i~~~~~   79 (365)
                      ...+.+.+|+++.|.|.+.+.|           .+ .+.|+|++....   .+...     ...........|.|.+++.
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~-~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~  107 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSY-NVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN  107 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCc-cEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence            4567789999999999965543           44 899999875310   00110     0000011234899999999


Q ss_pred             CCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-----cCCCCeeE
Q psy3823          80 LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-----NPPYKKLI  154 (365)
Q Consensus        80 ~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-----~p~~~~i~  154 (365)
                      +|+|.|+|.|.|..+.....+.|.|         ..++          .+..+.+|+++.|.|.+.+     .|.|. ++
T Consensus       108 ~DsG~Y~C~a~N~~~~~~~~i~L~V---------~~~~----------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~-I~  167 (227)
T PHA02826        108 IDEGIYICTISSGNICEESTIRLTF---------DSGT----------INYQFNSGKDSKLHCYGTDGISSTFKDYT-LT  167 (227)
T ss_pred             HHCEEEEEEEEECCcceEEEEEEEE---------ecCC----------ccceEecCCCEEEEeeCCCCccccCCCce-EE
Confidence            9999999999998777667788887         2221          1124678999999998763     34455 99


Q ss_pred             EEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823         155 WTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQ  198 (365)
Q Consensus       155 W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  198 (365)
                      |++||.++...........+.+|.|.+++.+|+|.|+|.+....
T Consensus       168 WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        168 WYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            99999998643322112235689999999999999999998753

>KOG4194|consensus

Probab=99.82  E-value=3e-19  Score=160.12  Aligned_cols=179  Identities=18%  Similarity=0.259  Sum_probs=142.4

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+....+..|+.+.|.|.+.|.|.| .+.|.|+|....+.....+..-.-....+.|.|+..+|.|.|+|.|.|..|..+
T Consensus       618 tP~dltl~tg~mArl~CaAtG~P~P-eIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~is  696 (873)
T KOG4194|consen  618 TPEDLTLRTGQMARLECAATGHPRP-EIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQIS  696 (873)
T ss_pred             CcccceeecccceeeeeeccCCCCc-ceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeecccccee
Confidence            3556778899999999999999999 999999887646554443322111122789999999999999999999999999


Q ss_pred             ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceE
Q psy3823          98 TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTL  177 (365)
Q Consensus        98 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l  177 (365)
                      ...+|+|         ...|.+.+..    .+..+..|+++.|.|.+.+.|+..++.|+++.+++....+......++-|
T Consensus       697 anAtL~V---------~e~p~f~~PL----~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQll  763 (873)
T KOG4194|consen  697 ANATLTV---------LETPSFSIPL----EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLL  763 (873)
T ss_pred             eceEEEE---------ecCCcccccc----cceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEE
Confidence            9999999         6666655443    55678999999999999998874449999999998765544444557789


Q ss_pred             EEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         178 VLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       178 ~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      .+.+....|+|.|+|+.++..|... ..+.+.+.
T Consensus       764 vv~~~~~~daG~yTcem~~~~~~~~-~~i~l~~~  796 (873)
T KOG4194|consen  764 VVKENLVEDAGIYTCEMSNTLGTER-IHICLLVY  796 (873)
T ss_pred             EEEehhhhhcceEEEEEEeecccee-eEEEEEEe
Confidence            9999999999999999999988665 45556555

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.78  E-value=1.3e-17  Score=139.08  Aligned_cols=156  Identities=13%  Similarity=0.131  Sum_probs=108.6

Q ss_pred             cceecCCcEEEEEEEEecCCC----------CeeEEEeCCeEEeeC---CC--------CceEEeeceEEEeeecCCCCe
Q psy3823         130 SVLNEGVDIYFDCHIQANPPY----------KKLIWTHNGITISNN---AS--------AGRIITNQTLVLQSVTRHSGG  188 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~----------~~i~W~~~~~~l~~~---~~--------~~~~~~~~~l~i~~~~~~d~G  188 (365)
                      ..+.+|++|.|.|.+.+++.+          .++.|++++...-..   ..        ......+.+|.|.+++.+|+|
T Consensus        32 ~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG  111 (227)
T PHA02826         32 VYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEG  111 (227)
T ss_pred             EEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCE
Confidence            457899999999998765432          249999987653110   00        011122568999999999999


Q ss_pred             EEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-----eCCCceeEEEeCC
Q psy3823         189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-----NPQAQYFTWAFNN  263 (365)
Q Consensus       189 ~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~~~~W~~~~  263 (365)
                      .|.|.+.|..+... ..+.|.|.          ..+.      . ..+..|+.+.|.|.+.+     .|.|. +.|+++|
T Consensus       112 ~Y~C~a~N~~~~~~-~~i~L~V~----------~~~~------~-~~~~~G~~v~L~C~~~~~~~~~~p~p~-I~WyKng  172 (227)
T PHA02826        112 IYICTISSGNICEE-STIRLTFD----------SGTI------N-YQFNSGKDSKLHCYGTDGISSTFKDYT-LTWYKNG  172 (227)
T ss_pred             EEEEEEEECCcceE-EEEEEEEe----------cCCc------c-ceEecCCCEEEEeeCCCCccccCCCce-EEEEECC
Confidence            99999999776543 45566665          2221      1 22678999999999853     35676 9999998


Q ss_pred             CCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         264 SDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .... ......+..+  ...|.|.+++.+|+|.|+|.|....+.
T Consensus       173 ~~l~-~~~r~~~~~~--~~~L~I~~V~~~DsG~YtC~a~~~~~g  213 (227)
T PHA02826        173 NIVL-YTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLRFNKNS  213 (227)
T ss_pred             EECC-CCCCEEEeCC--CCEEEECcCCHHhCEEEEEEEEEeECC
Confidence            7543 2223332222  236999999999999999999987644

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.74  E-value=1.7e-16  Score=140.76  Aligned_cols=162  Identities=14%  Similarity=0.250  Sum_probs=111.5

Q ss_pred             EEEecCCcEEEEEE-----eCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          22 YGALRNEQVLVSCT-----VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        22 ~~v~~G~~~~l~C~-----~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      ..+.+|+.+.|.|.     ..++|.+ .++|+++. . +.. .......++   .|.|.+++.+|.|.|+|.+.+..+..
T Consensus       131 ~~~~~g~~~~i~C~~~~~~~~~~~~~-~i~W~k~~-~-~~~-~r~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~g~~  203 (326)
T PHA02785        131 QIVNERSTGEMVCPNINAFIASNVNA-DIIWSGHR-R-LRN-KRLKQRTPG---IITIEDVRKNDAGYYTCVLKYIYGDK  203 (326)
T ss_pred             ceecccCcEEEECCChhhcccCCCCc-eEEEccCC-c-cCC-cceEecCCC---eEEEeecChhhCeEEEEEEEeccCCE
Confidence            34679999999997     2356888 99998764 2 322 221222233   79999999999999999999987765


Q ss_pred             c----ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC--CeeEEEeCCeEEeeCCCC--
Q psy3823          97 R----TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY--KKLIWTHNGITISNNASA--  168 (365)
Q Consensus        97 ~----~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~--~~i~W~~~~~~l~~~~~~--  168 (365)
                      .    ..+.|.|..      +..+|.+ ..+    ....+..|+.++|.|.+.|.|.+  ..+.|++||..+......  
T Consensus       204 ~~~~t~~v~l~V~~------~~~pp~~-~~p----~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~  272 (326)
T PHA02785        204 TYNVTRIVKLEVRD------RIIPPTM-QLP----EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGD  272 (326)
T ss_pred             EEeEEEEEEEEEec------cCCCcee-cCC----CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCc
Confidence            4    234455521      1234443 222    23456679999999999988764  349999999987532110  


Q ss_pred             -ce------------EEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         169 -GR------------IITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       169 -~~------------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                       +.            ......|.|.+++.+|+|.|+|.|.|..+..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        273 GRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             eeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence             11            1113579999999999999999999987543

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.58  E-value=4.1e-14  Score=102.47  Aligned_cols=83  Identities=17%  Similarity=0.144  Sum_probs=70.6

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      .+..|+.+.|.|.+.|.|++. +.|+++|.... ...+..+......+.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus        11 ~v~~G~~v~l~C~~~G~p~p~-v~W~kdg~~l~-~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l   88 (98)
T cd05762          11 KVRAGESVELFCKVTGTQPIT-CTWMKFRKQIQ-EGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNL   88 (98)
T ss_pred             EEECCCEEEEEEEEcccCCCc-eEEEECCEEec-CCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEE
Confidence            389999999999999999998 99999987543 2334445555566789999999999999999999999999999999


Q ss_pred             EEEcC
Q psy3823         315 HVVKA  319 (365)
Q Consensus       315 ~v~~~  319 (365)
                      .|...
T Consensus        89 ~V~~~   93 (98)
T cd05762          89 TVVDK   93 (98)
T ss_pred             EEecC
Confidence            98754

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.57  E-value=3.6e-14  Score=102.75  Aligned_cols=85  Identities=14%  Similarity=0.082  Sum_probs=73.0

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+....+.+|+.+.|.|.+.|.|.+ .+.|+|++.. +..............+.|.|.++..+|+|.|+|.|.|..|...
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~-l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~   83 (98)
T cd05762           6 FPEDMKVRAGESVELFCKVTGTQPI-TCTWMKFRKQ-IQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQ   83 (98)
T ss_pred             CCcCEEEECCCEEEEEEEEcccCCC-ceEEEECCEE-ecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCcee
Confidence            3456778999999999999999999 9999999998 7655444444445556899999999999999999999999999


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      .++.|.|
T Consensus        84 ~~~~l~V   90 (98)
T cd05762          84 AQVNLTV   90 (98)
T ss_pred             EEEEEEE
Confidence            9999999

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.56  E-value=5.4e-14  Score=99.27  Aligned_cols=81  Identities=10%  Similarity=0.081  Sum_probs=67.6

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      .+..|+.+.|.|.+.|.|+|. +.|++++........+..+......+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         6 ~v~~G~~v~l~c~~~G~P~P~-v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l   84 (86)
T cd05894           6 VVVAGNKLRLDVPISGEPAPT-VTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV   84 (86)
T ss_pred             EEEcCCEEEEEeeEeecCCCe-EEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence            488999999999999999998 9999998755433334444444556789999999999999999999999999888877


Q ss_pred             EE
Q psy3823         315 HV  316 (365)
Q Consensus       315 ~v  316 (365)
                      .|
T Consensus        85 ~V   86 (86)
T cd05894          85 KV   86 (86)
T ss_pred             EC
Confidence            65

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.53  E-value=1.3e-13  Score=99.04  Aligned_cols=87  Identities=15%  Similarity=0.206  Sum_probs=70.4

Q ss_pred             eCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEe-cCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          16 QSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        16 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ...+..+.+.+|+++.|.|.+.+.|.| .+.|+|++.. +......... ..+...+|.|.+++.+|+|.|+|.|.|..|
T Consensus         5 ~~lp~~v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~-l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (92)
T cd05737           5 GGLPDVVTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQA-LALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG   82 (92)
T ss_pred             ccCCceEEEeCCCcEEEEEEEEecCCC-eEEEEECCEE-CccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence            345667889999999999998899999 9999999988 6554433322 223446899999999999999999999999


Q ss_pred             CCcccEEEEE
Q psy3823          95 NQRTPCTFHV  104 (365)
Q Consensus        95 ~~~~~~~l~V  104 (365)
                      .....+.|.|
T Consensus        83 ~~~~~~~v~v   92 (92)
T cd05737          83 GETVDVTVSV   92 (92)
T ss_pred             cceEEEEEeC
Confidence            8887777654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.52  E-value=1.4e-13  Score=97.20  Aligned_cols=83  Identities=10%  Similarity=0.085  Sum_probs=68.5

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC-ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL-TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      ..+.+.+|+.+.|.|.+.+.|.| .+.|++++.. +.... ..........+.|.|.++..+|+|.|+|.|.|..|....
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~-i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~   80 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAP-TVTWSRGDKA-FTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHA   80 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCC-eEEEEECCEE-CccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEE
Confidence            46778999999999999999999 9999999988 65432 223333344568999999999999999999999999887


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      ++.|.|
T Consensus        81 ~~~l~V   86 (86)
T cd05894          81 SLFVKV   86 (86)
T ss_pred             EEEEEC
Confidence            777764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.51  E-value=6.7e-14  Score=96.06  Aligned_cols=74  Identities=23%  Similarity=0.333  Sum_probs=62.2

Q ss_pred             cCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        26 ~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +|+.+.|.|.+.++|.| .++|+|++.. +..........++   .|.|.+++.+|.|.|+|.|.|..|..+..+.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~-~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQ-LSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCC-EEEEEECCEE-CCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            69999999999999999 9999999987 6554433333344   8999999999999999999999999888777764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>KOG3515|consensus

Probab=99.51  E-value=5.4e-13  Score=125.59  Aligned_cols=309  Identities=20%  Similarity=0.216  Sum_probs=177.5

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      |.|....-.. .+.+|+.|.|.|.+.++|++..|.|++.++. +.  .+.....+.   +|.+.....+.-+.|.|.+.+
T Consensus         8 pv~~~~~l~~-~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~-~~--~~~~~~~~~---~~~~~~~~~~~~~~~~c~a~n   80 (741)
T KOG3515|consen    8 PVCESSSLTV-GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSG-EH--GRYATIADP---TLVTTGDVRDTVAELNCRAFN   80 (741)
T ss_pred             ccccCCCCCh-hhccCCcceeeeecCCCCCCcceEEEecCcc-cc--cccccccCC---ceeeecchhhhhhhhhhhhcc
Confidence            4443333344 8999999999999777777669999999988 55  111112333   677788888888999999998


Q ss_pred             CCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE--ecCCCCeeEEEeCCeEEeeCCCC
Q psy3823          92 EQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ--ANPPYKKLIWTHNGITISNNASA  168 (365)
Q Consensus        92 ~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~--~~p~~~~i~W~~~~~~l~~~~~~  168 (365)
                      ..+.-. ....+.+         .++|.-......    .....+..+.+.|...  +.|.+. ++|+.++.........
T Consensus        81 s~~~~~~~~~~l~v---------~~~pa~~~~~~e----~~~~~~~vvqi~c~~~~~~~P~~n-lrW~~n~r~e~~~~~~  146 (741)
T KOG3515|consen   81 SVGMPSRCPMILDV---------DYPPACLPELGE----IFQVDKGVVQIICSAKVAGRPNPN-LRWGFNNRAELNAVNQ  146 (741)
T ss_pred             cccCceecceeecc---------ccCccccccccc----hhhhcCCeEEEEEeecCCCCCCcc-eeeeeccEEeecccCC
Confidence            855443 6666666         566653332211    2345678899999665  345555 9999987655432210


Q ss_pred             ---------ceE-EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeec
Q psy3823         169 ---------GRI-ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR  238 (365)
Q Consensus       169 ---------~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~  238 (365)
                               .-. .....+.+...+..+.|.|+|.+.+......+....+.+....      .................+
T Consensus       147 ~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~------~~~~~~~~~~~~~qsF~~  220 (741)
T KOG3515|consen  147 RGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEA------PCKGIGITGAQEQQSFTE  220 (741)
T ss_pred             cccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccc------ccccceecchhhcCcccc
Confidence                     011 2245677888889999999999998533322222333333000      011111111211123789


Q ss_pred             CceEEEEEEEee-eCCCceeEEEeCCCCCCCC-CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         239 NEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPR-PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       239 g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      |+.+.|.|.+.+ .|.+. +.|+++....... ........+...+.+....-.....-...|++.| ...  ++..+.+
T Consensus       221 g~~inlvc~~~gg~P~~~-~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~--~~~~tav  296 (741)
T KOG3515|consen  221 GQTINLVCNAQGGNPSQQ-QTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLA--ASQITAV  296 (741)
T ss_pred             cceEEEEehhhcCCcchh-hhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccc--cceeeec
Confidence            999999997754 78887 9999976543321 1110000011122233322222334467799998 222  2222333


Q ss_pred             EcCcccc------ccCccccEEEEEEEEEcCCCCCceeeee
Q psy3823         317 VKAGECE------HPVAVSHRYVAKLYATNAKGAGPMVLMK  351 (365)
Q Consensus       317 ~~~~~c~------~~l~~~~~~~~~~~~~n~~g~s~~~~~~  351 (365)
                      ..+..|.      ..+-.|..+...+.+.++++.....+..
T Consensus       297 ~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~  337 (741)
T KOG3515|consen  297 QVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYK  337 (741)
T ss_pred             ccccccccccCcccccccccccccceeccCCCCccceeeec
Confidence            3222211      1466666666666666666544444443

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.51  E-value=2.6e-13  Score=97.39  Aligned_cols=81  Identities=17%  Similarity=0.242  Sum_probs=65.4

Q ss_pred             eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEe-eCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      ..+.+|+.+.|.|.+.|.|.|. +.|++++..... ..+..+. ..+..+.|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus        11 v~v~~G~~v~L~C~v~G~P~p~-v~W~k~g~~l~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (92)
T cd05737          11 VTIMEGKTLNLTCTVFGDPDPE-VSWLKNDQALAL-SDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV   88 (92)
T ss_pred             EEEeCCCcEEEEEEEEecCCCe-EEEEECCEECcc-CCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence            3488999999999999999998 999999865432 2333332 234456799999999999999999999999998887


Q ss_pred             EEEE
Q psy3823         313 TFHV  316 (365)
Q Consensus       313 ~l~v  316 (365)
                      .|.|
T Consensus        89 ~v~v   92 (92)
T cd05737          89 TVSV   92 (92)
T ss_pred             EEeC
Confidence            7764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.50  E-value=2.8e-13  Score=98.25  Aligned_cols=85  Identities=20%  Similarity=0.228  Sum_probs=69.1

Q ss_pred             CceEEEEecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCCCCCceeEecC-----CeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          18 QQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSYSIQD-----GSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      ......+.+|+++.|.|.+.+ .|.+ .+.|+|++.. +...........     ...+.|.|..+..+|+|.|+|.|.|
T Consensus         9 ~~~~~~v~~G~~v~L~c~v~g~~P~p-~v~W~Kdg~~-i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N   86 (101)
T cd04975           9 QNTTIFVNLGENLNLVVEVEAYPPPP-HINWTYDNRT-LTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN   86 (101)
T ss_pred             CCceEEEECCCCEEEEEEEEecCCCC-ccEEEeCCee-CCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence            345677899999999999988 8888 9999999998 765433222211     1346899999999999999999999


Q ss_pred             CCCCCcccEEEEE
Q psy3823          92 EQGNQRTPCTFHV  104 (365)
Q Consensus        92 ~~~~~~~~~~l~V  104 (365)
                      ..|..+.++.|.|
T Consensus        87 ~~G~~~~t~~L~V   99 (101)
T cd04975          87 SDASKSLTFELYV   99 (101)
T ss_pred             CCccEEEEEEEEE
Confidence            9998888888877

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.49  E-value=3.5e-13  Score=95.63  Aligned_cols=81  Identities=21%  Similarity=0.270  Sum_probs=66.6

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+....+.+|+.+.|.|.+.|+|.+ .++|+|++.. +..... ....+.   .|.|.+++.+|.|.|+|.|.|..|...
T Consensus         7 ~~~~~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~-~~~~~~-~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~   80 (88)
T cd05851           7 KFKDTYALKGQNVTLECFALGNPVP-VIRWRKILEP-MPATAE-ISMSGA---VLKIFNIQPEDEGTYECEAENIKGKDK   80 (88)
T ss_pred             ccccEEEeCCCcEEEEEEecccCCC-EEEEEECCcC-CCCCCE-EecCCC---EEEECcCChhhCEEEEEEEEcCCCceE
Confidence            4456668899999999999999999 9999999887 654332 111222   799999999999999999999999988


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      ..+.|.|
T Consensus        81 ~~~~l~V   87 (88)
T cd05851          81 HQARVYV   87 (88)
T ss_pred             EEEEEEE
Confidence            8888776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.49  E-value=3e-13  Score=97.08  Aligned_cols=88  Identities=17%  Similarity=0.195  Sum_probs=70.4

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      |.+. ..+....+.+|+.+.|.|.+.++|.+ .+.|++++.. +................|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~~~-~~p~~~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~~-l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   80 (92)
T cd05747           4 ATIL-TKPRSLTVSEGESARFSCDVDGEPAP-TVTWMREGQI-IVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN   80 (92)
T ss_pred             Cccc-ccCccEEEeCCCcEEEEEEEeecCCC-EEEEEECCEE-CCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence            4443 34567889999999999999999999 9999999987 6554443333444456899999999999999999999


Q ss_pred             CCCCCcccEEE
Q psy3823          92 EQGNQRTPCTF  102 (365)
Q Consensus        92 ~~~~~~~~~~l  102 (365)
                      ..|.....+.|
T Consensus        81 ~~G~~~~~~~l   91 (92)
T cd05747          81 SEGKQEAQFTL   91 (92)
T ss_pred             CCCCEeEEEEe
Confidence            99987776665

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.49  E-value=4.7e-13  Score=97.08  Aligned_cols=82  Identities=21%  Similarity=0.251  Sum_probs=65.3

Q ss_pred             eeeecCceEEEEEEEee-eCCCceeEEEeCCCCCCCCCCceeEeeC-----CCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         234 YGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYSIQD-----GSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      ..+..|+.+.|.|.+.| .|+|. +.|+++|...... ........     ...+.|.|..+..+|+|.|+|.|.|..|.
T Consensus        13 ~~v~~G~~v~L~c~v~g~~P~p~-v~W~Kdg~~i~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          13 IFVNLGENLNLVVEVEAYPPPPH-INWTYDNRTLTNK-LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             EEEECCCCEEEEEEEEecCCCCc-cEEEeCCeeCCCC-cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            44889999999999999 78887 9999998755422 22222111     12467999999999999999999999999


Q ss_pred             ceecEEEEEE
Q psy3823         308 QRTPCTFHVV  317 (365)
Q Consensus       308 ~~~~~~l~v~  317 (365)
                      .+..+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9998888875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.49  E-value=1.7e-13  Score=93.30  Aligned_cols=73  Identities=21%  Similarity=0.417  Sum_probs=61.4

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |+.+.|.|.+.+.|.+ .+.|+|++.. +..........++   +|.|.+++.+|.|.|+|.|.|..|....+..|+|
T Consensus         1 G~~~~l~C~~~g~P~p-~v~W~k~~~~-l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKP-KFSWSKGTEL-LVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCC-EEEEEeCCEe-cccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            7899999998899999 9999999987 5544443333445   7999999999999999999999999888887764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.48  E-value=5.6e-13  Score=94.60  Aligned_cols=87  Identities=20%  Similarity=0.252  Sum_probs=66.8

Q ss_pred             CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      |.+........ +..|+.+.|.|.+.|.|.|. +.|++++..... .  ..+...+  ..|.|.+++.+|+|.|+|.|.|
T Consensus         2 p~i~~~~~~~~-~~~G~~v~l~C~~~G~P~P~-v~W~k~~~~~~~-~--~~~~~~~--~~L~I~~v~~~D~G~Y~C~A~N   74 (88)
T cd05851           2 ADINVKFKDTY-ALKGQNVTLECFALGNPVPV-IRWRKILEPMPA-T--AEISMSG--AVLKIFNIQPEDEGTYECEAEN   74 (88)
T ss_pred             CceEEccccEE-EeCCCcEEEEEEecccCCCE-EEEEECCcCCCC-C--CEEecCC--CEEEECcCChhhCEEEEEEEEc
Confidence            44444443333 88999999999999999998 999998764322 1  1222222  3599999999999999999999


Q ss_pred             CCccceecEEEEEE
Q psy3823         304 EQGSQRTPCTFHVV  317 (365)
Q Consensus       304 ~~g~~~~~~~l~v~  317 (365)
                      ..|..+..+.|.|+
T Consensus        75 ~~G~~~~~~~l~V~   88 (88)
T cd05851          75 IKGKDKHQARVYVQ   88 (88)
T ss_pred             CCCceEEEEEEEEC
Confidence            99999998888774

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.48  E-value=2.7e-13  Score=92.65  Aligned_cols=74  Identities=20%  Similarity=0.210  Sum_probs=59.6

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeC-CCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQD-GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      +.|.|.+.|.|.|. +.|++++........+..+..+ .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~v~G~P~P~-i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPK-IFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCe-EEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47999999999998 9999998755433344444332 33457999999999999999999999999998888765

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.47  E-value=3.5e-13  Score=92.24  Aligned_cols=74  Identities=20%  Similarity=0.229  Sum_probs=59.6

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCC-CEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDG-STSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      +.|.|.+.|.|.|. +.|++++........+.....++ ....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~-v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQ-IFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCE-EEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            47999999999998 99999987654433444443332 3446999999999999999999999999998888865

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.47  E-value=7.9e-13  Score=93.79  Aligned_cols=81  Identities=20%  Similarity=0.255  Sum_probs=64.5

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEee----CCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQ----DGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~----~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      |+.+.|.|.+.|.|++. +.|++++........++.+..    +...+.|.|.++..+|+|.|+|.|.|..|..+..+.|
T Consensus         1 g~~~~l~C~~~g~p~~~-i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPII-VRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCE-EEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            78999999999999998 999998864433223333221    2234679999999999999999999999999999999


Q ss_pred             EEEcCc
Q psy3823         315 HVVKAG  320 (365)
Q Consensus       315 ~v~~~~  320 (365)
                      .|..++
T Consensus        80 ~V~~~P   85 (88)
T cd05735          80 TVQEPP   85 (88)
T ss_pred             EEeCCC
Confidence            987543

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.47  E-value=8.6e-13  Score=94.70  Aligned_cols=90  Identities=16%  Similarity=0.172  Sum_probs=70.2

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+...+.. ..+..|+.+.|.|.+.|.|.|. +.|+++|.... ...+..+......+.|.|.+++.+|+|.|.|.|
T Consensus         2 ~~~~~~~~p~~-~~~~~G~~~~L~C~~~g~P~p~-v~W~k~g~~l~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   78 (92)
T cd05747           2 LPATILTKPRS-LTVSEGESARFSCDVDGEPAPT-VTWMREGQIIV-SSQRHQITSTEYKSTFEISKVQMSDEGNYTVVV   78 (92)
T ss_pred             CCCcccccCcc-EEEeCCCcEEEEEEEeecCCCE-EEEEECCEECC-CCCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence            35555544433 3389999999999999999998 99999876432 233444444555678999999999999999999


Q ss_pred             EcCCccceecEEE
Q psy3823         302 RNEQGSQRTPCTF  314 (365)
Q Consensus       302 ~n~~g~~~~~~~l  314 (365)
                      .|..|..+..+.|
T Consensus        79 ~N~~G~~~~~~~l   91 (92)
T cd05747          79 ENSEGKQEAQFTL   91 (92)
T ss_pred             EcCCCCEeEEEEe
Confidence            9999998877665

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.47  E-value=8.2e-13  Score=95.53  Aligned_cols=81  Identities=19%  Similarity=0.268  Sum_probs=65.5

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      .+..|+.+.|.|.+.|.|.|. +.|+++|..............  ..+.|.|.+++.+|.|.|+|.|.|..|..+.++.|
T Consensus        14 ~~~~G~~v~L~C~~~g~P~p~-v~W~k~g~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L   90 (95)
T cd05730          14 TANLGQSVTLACDADGFPEPT-MTWTKDGEPIESGEEKYSFNE--DGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL   90 (95)
T ss_pred             EEeCCCCEEEEEeccEeCCCE-EEEEECCEECcCCCCEEEEeC--CCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence            378999999999999999998 999998875433322222222  23469999999999999999999999999999999


Q ss_pred             EEEc
Q psy3823         315 HVVK  318 (365)
Q Consensus       315 ~v~~  318 (365)
                      .|..
T Consensus        91 ~V~~   94 (95)
T cd05730          91 KVFA   94 (95)
T ss_pred             EEEe
Confidence            8864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.46  E-value=1.4e-12  Score=94.57  Aligned_cols=92  Identities=16%  Similarity=0.246  Sum_probs=67.3

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC----CceeEeeCCCEEEEEEcCCCcccCeEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP----LTSYSIQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      .|.|...+.... +..|+.+.|.|.+.|.|.|. +.|++++.......    .+.....+...+.|.|.+++.+|+|.|+
T Consensus         2 ~p~i~~~~~~~~-~~~g~~v~l~C~~~G~P~P~-v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~   79 (97)
T cd05869           2 KPKITYVENQTA-MELEEQITLTCEASGDPIPS-ITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL   79 (97)
T ss_pred             CceEEEccCceE-EEcCCCEEEEEEeeEeCCCE-EEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEE
Confidence            355544332322 55689999999999999998 99999875332111    1122233444578999999999999999


Q ss_pred             EEEEcCCccceecEEEEE
Q psy3823         299 CWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       299 C~a~n~~g~~~~~~~l~v  316 (365)
                      |.|.|..|..+.++.|.|
T Consensus        80 C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          80 CTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEecCCCCeeEEEEEEC
Confidence            999999999998888765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.45  E-value=2.7e-12  Score=99.74  Aligned_cols=117  Identities=20%  Similarity=0.265  Sum_probs=83.2

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CC
Q psy3823          71 VARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PP  149 (365)
Q Consensus        71 ~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~  149 (365)
                      +|.|.+++..|+|.|+|.+.+..+.....++|.|         ..+|.+.+.+..    ....+|+.+.|.|.+.|. |+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v---------~~~P~v~~~~~~----~~~~~~~~~~L~C~a~g~~P~   68 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSV---------SEPPRVRLSLEK----LVSMIEEPQTLICHIAGYYPL   68 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEE---------ecCCceEEeCCC----ceeecCCcEEEEEEECCCCCC
Confidence            6899999999999999999987777778889999         668887765532    233478999999999985 44


Q ss_pred             CCeeEEEeCCeEEee-----CC---------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         150 YKKLIWTHNGITISN-----NA---------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       150 ~~~i~W~~~~~~l~~-----~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      ...|.|+++|.....     ..         ..+.......|.+.....++.+.|+|.+.+....
T Consensus        69 ~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~  133 (139)
T cd05771          69 DVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE  133 (139)
T ss_pred             CeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence            346999998754211     00         0111112345666655556778999999887543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.45  E-value=8.2e-13  Score=94.60  Aligned_cols=89  Identities=22%  Similarity=0.334  Sum_probs=72.0

Q ss_pred             ceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         225 VCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       225 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      .+...+.. ..+..|+.+.|.|.+.+.|.+. +.|+++|.... ...+......+..+.|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~~~~~~~~-~~v~~G~~~~l~c~~~~~p~~~-v~W~~~~~~l~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen    2 VFTKKPKD-VTVKEGESVTLECEVSGNPPPT-VTWYKNGRPLT-SSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             EEEEESSE-EEEETTSEEEEEEEEEESSSSE-EEEEETTEEEE-SSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred             EEEEecCC-EEEeCCCEEEEEEEEEeCCCCc-cccccccccee-eeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence            34433433 3389999999999999999998 99999976443 344555555667889999999999999999999999


Q ss_pred             CccceecEEEEE
Q psy3823         305 QGSQRTPCTFHV  316 (365)
Q Consensus       305 ~g~~~~~~~l~v  316 (365)
                      .|..+..+.|.|
T Consensus        79 ~g~~~~~~~l~V   90 (90)
T PF07679_consen   79 SGEATASVNLTV   90 (90)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEC
Confidence            999998888876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.45  E-value=8.6e-13  Score=94.28  Aligned_cols=82  Identities=13%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPC  100 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~  100 (365)
                      ...+.+|+.+.|.|.+.++|.| .+.|++++.. +................|.|.++..+|.|.|+|.|.|..|.....+
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~   86 (90)
T cd04972           9 ATVVYEGGTATIRCTAEGSPLP-KVEWIIAGLI-VIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV   86 (90)
T ss_pred             CEEEcCCCcEEEEEEEEEcCCC-eEEEEECCEE-ccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence            3448899999999998899999 9999999987 6543332222334456899999999999999999999999988877


Q ss_pred             EEEE
Q psy3823         101 TFHV  104 (365)
Q Consensus       101 ~l~V  104 (365)
                      .|+|
T Consensus        87 ~L~v   90 (90)
T cd04972          87 QVTV   90 (90)
T ss_pred             EEeC
Confidence            7764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.44  E-value=4.4e-13  Score=91.99  Aligned_cols=74  Identities=23%  Similarity=0.321  Sum_probs=59.7

Q ss_pred             cCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      +|+.+.|.|.+.|.|.|. +.|++++..... ........+   ..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~-i~W~k~g~~~~~-~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPV-IAWTKGGSQLSV-DRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCE-EEEEECCEECCC-CCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            589999999999999998 999998864432 222222222   25999999999999999999999999998888765

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.44  E-value=6e-13  Score=94.87  Aligned_cols=79  Identities=24%  Similarity=0.409  Sum_probs=64.2

Q ss_pred             ccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      +..+.+|++++|.|.+.|. .|. +.|++++..+... .........+|.|.+++++|+|.|+|.|.|..|...+..+.|
T Consensus        12 ~~~v~~g~~v~l~C~a~g~-~p~-i~W~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L   88 (91)
T cd05740          12 NQPPEDNQPVTLTCEAEGQ-ATY-IWWVNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL   88 (91)
T ss_pred             ccccccCCcEEEEEEeCCC-CCE-EEEEECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence            3478899999999999998 666 9999999887532 111122356899999999999999999999999887778877


Q ss_pred             EE
Q psy3823         209 NI  210 (365)
Q Consensus       209 ~v  210 (365)
                      .|
T Consensus        89 ~V   90 (91)
T cd05740          89 NV   90 (91)
T ss_pred             Ee
Confidence            76

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.44  E-value=1.3e-12  Score=93.04  Aligned_cols=84  Identities=20%  Similarity=0.246  Sum_probs=67.5

Q ss_pred             eeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          15 KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        15 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ....+....+.+|+.+.|.|.+.++|.+ .++|++++.. +..... ....++   .|.|.+++.+|+|.|+|.|.|..|
T Consensus         4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~-~~~~~~-~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G   77 (88)
T cd04968           4 IVVFPKDTYALKGQNVTLECFALGNPVP-QIKWRKVDGS-MPSSAE-ISMSGA---VLKIPNIQFEDEGTYECEAENIKG   77 (88)
T ss_pred             EEECCCceEEeCCCcEEEEEEeeEeCCC-EEEEEECCCc-CCCccE-EEEeCC---EEEECCCCcccCEEEEEEEEECCC
Confidence            3445566778899999999999899999 9999998876 433322 112333   899999999999999999999999


Q ss_pred             CCcccEEEEE
Q psy3823          95 NQRTPCTFHV  104 (365)
Q Consensus        95 ~~~~~~~l~V  104 (365)
                      .......|.|
T Consensus        78 ~~~~~~~l~V   87 (88)
T cd04968          78 KDTHQGRIYV   87 (88)
T ss_pred             cEEEEEEEEE
Confidence            9888888776

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.44  E-value=1.1e-12  Score=93.85  Aligned_cols=86  Identities=15%  Similarity=0.231  Sum_probs=69.1

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCcee-EecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSY-SIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ..+..+.+.+|+.+.|.|.+.+.|.+ .+.|++++.. +....... ....+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         6 ~~p~~v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   83 (92)
T cd05891           6 GLPDVVTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQD-IELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGG   83 (92)
T ss_pred             cCCCcEEEcCCCEEEEEEEEEEeCCC-eEEEEECCEE-CCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCc
Confidence            45667889999999999998889999 9999999987 65443322 222333457999999999999999999999999


Q ss_pred             CcccEEEEE
Q psy3823          96 QRTPCTFHV  104 (365)
Q Consensus        96 ~~~~~~l~V  104 (365)
                      ...++.|.|
T Consensus        84 ~~~~~~v~~   92 (92)
T cd05891          84 ETVDVTVSV   92 (92)
T ss_pred             eeeEEEEEC
Confidence            887777764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.43  E-value=1.4e-12  Score=89.91  Aligned_cols=76  Identities=21%  Similarity=0.335  Sum_probs=59.8

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      |+.+.|.|.+.|.|.|. +.|+++|..........+....  ...|.|.+++.+|+|.|.|.|.|..|.....+.|.|.
T Consensus         1 G~~v~l~C~~~G~P~p~-i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   76 (76)
T cd05867           1 GETARLDCQVEGIPTPN-ITWSINGAPIEGTDPDPRRHVS--SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV   76 (76)
T ss_pred             CCeEEEEEEeeEeCCCe-EEEEECCEECCCCCCCceEEee--CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence            68899999999999998 9999998754332222122111  1259999999999999999999999999988888773

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.43  E-value=7.5e-13  Score=90.12  Aligned_cols=73  Identities=21%  Similarity=0.432  Sum_probs=59.4

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      |+.+.|.|.+.|.|.|. +.|++++... ....+..+..++   .|.|.+++.+|+|.|.|.|.|..|+...+..|.|
T Consensus         1 G~~~~l~C~~~g~P~p~-v~W~k~~~~l-~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPK-FSWSKGTELL-VNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCE-EEEEeCCEec-ccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            67899999999999998 9999987643 233333333333   4999999999999999999999999998888864

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.43  E-value=1.2e-12  Score=95.17  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=64.8

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEe-----eCCCEEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSI-----QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT  310 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~-----~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~  310 (365)
                      +..|+.+.|.|.+.|+|+|. +.|+++|.+...........     .....+.|.|..++.+|+|.|+|.|.|..|..+.
T Consensus        15 ~~~~~~~~l~~~v~g~P~P~-v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~   93 (101)
T cd05859          15 ANLHEVKEFVVEVEAYPPPQ-IRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY   93 (101)
T ss_pred             EecCCcEEEEEEEEEeCCCc-eEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence            77899999999999999998 99999997654322211111     1123467999999999999999999999999998


Q ss_pred             cEEEEEE
Q psy3823         311 PCTFHVV  317 (365)
Q Consensus       311 ~~~l~v~  317 (365)
                      ++.|.|.
T Consensus        94 t~~l~V~  100 (101)
T cd05859          94 TFALQIQ  100 (101)
T ss_pred             EEEEEEE
Confidence            8888875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.43  E-value=3.2e-12  Score=94.51  Aligned_cols=95  Identities=19%  Similarity=0.189  Sum_probs=71.5

Q ss_pred             cccCCeEeeCCceEEEEe---cCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC-CceeE----ecCCeEEEEEEccCC-
Q psy3823           8 STDEPVCKQSQQRIYGAL---RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP-LTSYS----IQDGSTSVARYTPTS-   78 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~---~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-~~~~~----~~~~~~~~l~i~~~~-   78 (365)
                      |.|+|.+....+-...+.   .|..++|.|.+.+.|.+ .++|++++.. +... .....    ......+.|.|.++. 
T Consensus         1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p-~i~W~k~g~~-l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~   78 (109)
T cd05773           1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV-QFRWAKNGVP-LDLGNPRYEETTEHTGTVHTSILTIINVSA   78 (109)
T ss_pred             CccccccccCCceEEEEEecCCCCEEEEEEECcccCCC-EEEEEECCEE-CCCCCCeEEEEeeccCccceeEEEECcCCc
Confidence            568888876544222222   56899999999899999 9999999987 6532 22111    112234689999997 


Q ss_pred             CCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          79 ELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      .+|.|.|+|.|.|..|.....+.|.|
T Consensus        79 ~~D~G~Y~C~A~N~~G~~~~~i~L~~  104 (109)
T cd05773          79 ALDYALFTCTAHNSLGEDSLDIQLVS  104 (109)
T ss_pred             cCCCEEEEEEEEeCCccCcEEEEEEe
Confidence            58999999999999999999999998

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.42  E-value=8.7e-13  Score=94.46  Aligned_cols=84  Identities=23%  Similarity=0.317  Sum_probs=71.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      +....+.+|+++.|.|.+.+.|.+ .+.|++++.. +................|.|.+++.+|.|.|+|.|.+..|....
T Consensus         7 ~~~~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~   84 (90)
T PF07679_consen    7 PKDVTVKEGESVTLECEVSGNPPP-TVTWYKNGRP-LTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATA   84 (90)
T ss_dssp             SSEEEEETTSEEEEEEEEEESSSS-EEEEEETTEE-EESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEEeCCCC-cccccccccc-eeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEE
Confidence            467778999999999998788999 9999999988 77655555444457779999999999999999999999888877


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      .+.|.|
T Consensus        85 ~~~l~V   90 (90)
T PF07679_consen   85 SVNLTV   90 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            777765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.42  E-value=8.7e-13  Score=87.61  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=55.2

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      +.|.|.+.|.|+|. +.|+++|.....         ....+.|.|.++..+|+|.|+|.|.|..|..++++.|+|.
T Consensus         1 ~~l~c~v~g~P~P~-v~W~kdg~~l~~---------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPE-FQWYKDGKLISG---------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCE-EEEEECCEECcc---------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            47899999999998 999999875431         1233469999999999999999999999988888888764

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.42  E-value=8.2e-13  Score=90.38  Aligned_cols=73  Identities=18%  Similarity=0.339  Sum_probs=61.2

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |+.+.|.|.+.+.|.+ .++|++++.. +..........++   .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p-~v~W~k~~~~-~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKP-TISWSKGTEL-LTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCC-EEEEEECCEE-cccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            7899999998899999 9999999988 6554443333344   7999999999999999999999999888777764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.42  E-value=1.9e-12  Score=88.86  Aligned_cols=74  Identities=12%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             eEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         241 QVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       241 ~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      .+.|.|.+.|.|.|. +.|+++|... ....+..+......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~-v~W~k~g~~l-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPT-VTWSKDGKPL-KLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCe-EEEEECCEEc-CCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            368999999999998 9999998754 2233444445556778999999999999999999999999988887764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.42  E-value=3.4e-12  Score=92.54  Aligned_cols=80  Identities=18%  Similarity=0.260  Sum_probs=63.3

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC----CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP----LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                      +.+|+.+.|.|.+.|.|.|. +.|++++.......    .+.........+.|.|.+++.+|+|.|.|.|.|..|..+.+
T Consensus        13 ~~~g~~v~l~C~~~g~p~p~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s   91 (96)
T cd05732          13 AVELEQITLTCEAEGDPIPE-ITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQS   91 (96)
T ss_pred             EecCCcEEEEEEEeEcCCCc-EEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEE
Confidence            78899999999999999998 99999874332111    11222334456789999999999999999999999999888


Q ss_pred             EEEEE
Q psy3823         312 CTFHV  316 (365)
Q Consensus       312 ~~l~v  316 (365)
                      +.|.|
T Consensus        92 ~~l~v   96 (96)
T cd05732          92 MYLEV   96 (96)
T ss_pred             EEEeC
Confidence            77764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.42  E-value=1.8e-12  Score=88.94  Aligned_cols=74  Identities=23%  Similarity=0.192  Sum_probs=59.1

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeC-CCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQD-GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      +.|.|.+.|.|.|. +.|++++........+.....+ .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~L~C~v~G~P~P~-v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQ-IFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCe-EEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            47999999999998 9999998755433334443333 34456999999999999999999999999988888764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.42  E-value=2.3e-12  Score=91.40  Aligned_cols=76  Identities=20%  Similarity=0.288  Sum_probs=62.9

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC-ceeE----ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL-TSYS----IQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCT  101 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~  101 (365)
                      |+.++|.|.+.+.|.+ .++|++++.. +.... +...    ......+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         1 g~~~~l~C~~~g~p~~-~i~W~k~~~~-i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~   78 (88)
T cd05735           1 GQKKEMSCTAHGEKPI-IVRWEKEDRI-INPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ   78 (88)
T ss_pred             CCeEEEEEEEECCCCC-EEEEeeCCEE-CCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence            7899999998899999 9999999987 64332 2211    12344568999999999999999999999999999999


Q ss_pred             EEE
Q psy3823         102 FHV  104 (365)
Q Consensus       102 l~V  104 (365)
                      |.|
T Consensus        79 L~V   81 (88)
T cd05735          79 LTV   81 (88)
T ss_pred             EEE
Confidence            999

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.42  E-value=1.4e-12  Score=92.20  Aligned_cols=82  Identities=15%  Similarity=0.172  Sum_probs=65.0

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      ...+.+|+.+.|.|.+.+.|.+ .++|+|++.. +...... ..........|.|.+++.+|+|.|+|.|.|..|....+
T Consensus         3 ~~~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~-l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~   80 (85)
T cd05857           3 LHAVPAANTVKFRCPAAGNPTP-TMRWLKNGKE-FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT   80 (85)
T ss_pred             cEEcCCCCEEEEEEEcCCCCCC-EEEEEECCEE-CCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEE
Confidence            3567899999999998899999 9999999988 6543321 11112233479999999999999999999999988888


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      +.|.|
T Consensus        81 ~~l~v   85 (85)
T cd05857          81 YHLDV   85 (85)
T ss_pred             EEEEC
Confidence            87764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.42  E-value=2.7e-12  Score=91.34  Aligned_cols=79  Identities=14%  Similarity=0.251  Sum_probs=62.4

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc-eecEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ-RTPCTF  314 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l  314 (365)
                      +..|+.+.|.|.+.|.|. . +.|+++++.......+..+..++..+.|.|.++..+|+|.|+|.|.|..|.. .+++.|
T Consensus        12 v~~G~~v~l~C~~~G~P~-~-v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l   89 (92)
T cd05866          12 LSVGESKFFTCTAIGEPE-S-IDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL   89 (92)
T ss_pred             EcCCCeEEEEEEEEEeCC-e-EEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEE
Confidence            789999999999999987 6 9999864433333344555556666789999999999999999999999985 566665


Q ss_pred             EE
Q psy3823         315 HV  316 (365)
Q Consensus       315 ~v  316 (365)
                      .+
T Consensus        90 ~~   91 (92)
T cd05866          90 EI   91 (92)
T ss_pred             EE
Confidence            54

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.42  E-value=2.5e-12  Score=93.44  Aligned_cols=91  Identities=14%  Similarity=0.189  Sum_probs=65.7

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC------CCceeEeeCCCEEEEEEcCCCcccCeE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR------PLTSYSIQDGSTSVARYTPTSELEYGT  296 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~s~l~i~~v~~~d~G~  296 (365)
                      +|.+.... . ..+.+|+.+.|.|.+.|.|.|. +.|++........      ..+.........+.|.|.+++.+|+|.
T Consensus         2 ~p~i~~~~-~-~~~~~G~~v~l~C~~~G~P~p~-i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~   78 (98)
T cd05870           2 QPHIIQLK-N-ETTVENGAATLSCKAEGEPIPE-ITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGR   78 (98)
T ss_pred             CCEEEeec-c-EEEcCCCcEEEEEecccCCCCe-EEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEE
Confidence            35554322 2 3388999999999999999998 9999953221111      112222333344679999999999999


Q ss_pred             EEEEEEcCCccceecEEEEE
Q psy3823         297 LLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       297 Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      |+|.|.|..|....++.|.|
T Consensus        79 Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          79 YDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEeccCCcceeEEEEeC
Confidence            99999999999988877754

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.42  E-value=2.7e-12  Score=91.88  Aligned_cols=80  Identities=18%  Similarity=0.282  Sum_probs=63.8

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      .+.+|+.+.|.|.+.+.|.|. +.|++++..... ...+.. ...+..+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus        12 ~v~eG~~v~L~C~v~g~P~p~-i~W~k~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   89 (92)
T cd05891          12 TIMEGKTLNLTCTVFGNPDPE-VIWFKNDQDIEL-SEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT   89 (92)
T ss_pred             EEcCCCEEEEEEEEEEeCCCe-EEEEECCEECCC-CCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence            388999999999999999998 999998864432 222222 22333457999999999999999999999999988877


Q ss_pred             EEE
Q psy3823         314 FHV  316 (365)
Q Consensus       314 l~v  316 (365)
                      |+|
T Consensus        90 v~~   92 (92)
T cd05891          90 VSV   92 (92)
T ss_pred             EEC
Confidence            764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.41  E-value=1.5e-12  Score=89.36  Aligned_cols=74  Identities=12%  Similarity=0.147  Sum_probs=61.2

Q ss_pred             cEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          29 QVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        29 ~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      .+.|.|.+.+.|.| .+.|+|++.. +..............+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~~l~c~~~G~P~p-~v~W~k~g~~-l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTP-TVTWSKDGKP-LKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCC-eEEEEECCEE-cCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            47899999999999 9999999988 75444434334445678999999999999999999999998887777764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.41  E-value=3.3e-12  Score=91.25  Aligned_cols=79  Identities=14%  Similarity=0.188  Sum_probs=63.7

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +..|+.+.|.|.+.|.|.|. +.|+++|...... ...........+.|.|.++..+|.|.|+|.|.|..|....++.|.
T Consensus        12 v~~G~~v~l~C~~~G~P~p~-v~W~~~g~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~   89 (90)
T cd04972          12 VYEGGTATIRCTAEGSPLPK-VEWIIAGLIVIQT-RTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT   89 (90)
T ss_pred             EcCCCcEEEEEEEEEcCCCe-EEEEECCEEccCC-ccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence            78999999999999999998 9999998743221 111222334456799999999999999999999999998888776


Q ss_pred             E
Q psy3823         316 V  316 (365)
Q Consensus       316 v  316 (365)
                      |
T Consensus        90 v   90 (90)
T cd04972          90 V   90 (90)
T ss_pred             C
Confidence            4

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.41  E-value=2.2e-12  Score=88.84  Aligned_cols=75  Identities=21%  Similarity=0.329  Sum_probs=59.6

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      |+.+.|.|.+.|.|.|. +.|+++|..............++.  .|.|.+++.+|+|.|.|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~-i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPS-ISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCe-EEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            67899999999999998 999999875432221111122332  5889999999999999999999999999998877

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.41  E-value=2.2e-12  Score=92.73  Aligned_cols=84  Identities=14%  Similarity=0.164  Sum_probs=64.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCC-cceEEEEe-CCCcCCCC-CCcee-EecCCeEEEEEEccCCCCCCeEEEEEEEeCC-
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQ-AQYFTWAF-NNSGTAPR-PLTSY-SIQDGSTSVARYTPTSELEYGTLLCWARNEQ-   93 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~-~~~v~W~~-~~~~~l~~-~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~-   93 (365)
                      +....+.+|+.++|.|.+.+.|. + .++|++ ++.. +.. ..... ...+...++|.|.+++.+|+|.|+|.|.|.. 
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p-~i~W~~~~g~~-l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~   84 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDK-DISWFSPNGEK-LTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE   84 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCC-EEEEECCCCcC-ccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence            34446889999999999889984 7 999998 6655 443 22222 2233345689999999999999999999986 


Q ss_pred             CCCcccEEEEE
Q psy3823          94 GNQRTPCTFHV  104 (365)
Q Consensus        94 ~~~~~~~~l~V  104 (365)
                      +....++.|.|
T Consensus        85 g~~~~s~~l~v   95 (96)
T cd05865          85 GESEATVNVKI   95 (96)
T ss_pred             CcEEEEEEEEE
Confidence            66668888776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.40  E-value=2e-12  Score=89.21  Aligned_cols=74  Identities=23%  Similarity=0.493  Sum_probs=60.3

Q ss_pred             CCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC-CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNAS-AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       135 g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      |+.+.|.|.+.|.|.|. +.|+++|.++..... ......++.|.|.+++..|+|.|+|.|.|..|... ..+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~-i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPN-ITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLL-ANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCe-EEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEE-EEEEEEE
Confidence            68899999999999887 999999998865332 23444567899999999999999999999999765 4555554

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.40  E-value=2e-12  Score=93.52  Aligned_cols=83  Identities=20%  Similarity=0.294  Sum_probs=67.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      .....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +........ .....+.|.|.+++.+|.|.|+|.|.|..|....
T Consensus        10 ~~~~~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~-~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (95)
T cd05730          10 EVNATANLGQSVTLACDADGFPEP-TMTWTKDGEP-IESGEEKYS-FNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEA   86 (95)
T ss_pred             ccceEEeCCCCEEEEEeccEeCCC-EEEEEECCEE-CcCCCCEEE-EeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence            345678899999999999899999 9999999987 654422121 1122237999999999999999999999999888


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      .+.|.|
T Consensus        87 ~~~L~V   92 (95)
T cd05730          87 EIHLKV   92 (95)
T ss_pred             EEEEEE
Confidence            888888

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.40  E-value=1.9e-12  Score=91.53  Aligned_cols=80  Identities=16%  Similarity=0.199  Sum_probs=62.2

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +..|+.+.|.|.+.|.|.|. +.|+++|...........+........|.|.++..+|+|.|+|.|.|..|+...++.|.
T Consensus         6 v~~G~~~~L~C~~~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05857           6 VPAANTVKFRCPAAGNPTPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   84 (85)
T ss_pred             cCCCCEEEEEEEcCCCCCCE-EEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence            77899999999999999998 99999987543322111111112234589999999999999999999999999888876


Q ss_pred             E
Q psy3823         316 V  316 (365)
Q Consensus       316 v  316 (365)
                      |
T Consensus        85 v   85 (85)
T cd05857          85 V   85 (85)
T ss_pred             C
Confidence            5

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.40  E-value=1.1e-12  Score=89.62  Aligned_cols=73  Identities=18%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCC-CceeE-ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRP-LTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +.|.|.+.+.|.| .+.|+|++.. +... .+... ..+....+|.|.+++.+|+|.|+|.|.|..|.......|.|
T Consensus         1 v~l~C~v~G~P~P-~i~W~k~~~~-i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPP-KIFWKRNNEM-VQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCC-eEEEEECCEE-CcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            5799999999999 9999999988 6533 22222 22233347999999999999999999999998887777764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.39  E-value=5.4e-12  Score=91.67  Aligned_cols=90  Identities=14%  Similarity=0.168  Sum_probs=66.5

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCC--CcCCCCC-----CceeEecCCeEEEEEEccCCCCCCe
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNN--SGTAPRP-----LTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~--~~~l~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +|.+..  .+...+.+|+.++|.|.+.+.|.+ .+.|+++.  .. +...     .............|.|.+++.+|+|
T Consensus         2 ~p~i~~--~~~~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~-~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G   77 (98)
T cd05870           2 QPHIIQ--LKNETTVENGAATLSCKAEGEPIP-EITWKRASDGHT-FSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG   77 (98)
T ss_pred             CCEEEe--eccEEEcCCCcEEEEEecccCCCC-eEEEEECCCCce-eccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence            355533  456778999999999999899999 99999953  32 2211     1111222233458999999999999


Q ss_pred             EEEEEEEeCCCCCcccEEEEE
Q psy3823          84 TLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      .|+|.|.|..|....++.|.|
T Consensus        78 ~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          78 RYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEEeccCCcceeEEEEeC
Confidence            999999999998887777764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.39  E-value=3.6e-12  Score=86.58  Aligned_cols=71  Identities=17%  Similarity=0.335  Sum_probs=56.6

Q ss_pred             eEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         241 QVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       241 ~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      ++.|.|.+.|.|.|. +.|+++|..... ........++.   |.|.+++.+|+|.|+|.|.|..|+.+.++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~-v~W~k~g~~~~~-~~~~~~~~~~~---l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPT-VKWVKNGDMVIP-SDYFKIVKEHN---LQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCE-EEEEECCeECCC-CCCEEEEecCC---EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            378999999999998 999999875432 23333333443   778899999999999999999999998888764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.39  E-value=5.5e-12  Score=93.27  Aligned_cols=98  Identities=19%  Similarity=0.196  Sum_probs=70.3

Q ss_pred             CCCceecCccceeee---ecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEe--eC--CCEEEEEEcCCC-ccc
Q psy3823         222 DEPVCKQSQQRIYGA---LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSI--QD--GSTSVARYTPTS-ELE  293 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~---~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~--~~--~~~s~l~i~~v~-~~d  293 (365)
                      ++|.+...+.....+   ..|..+.|.|.+.|.|++. +.|+++|........++...  ..  ...+.|.|.++. .+|
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~-i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQ-FRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCE-EEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            566665544321212   2467899999999999998 99999987543322233211  11  224679999987 589


Q ss_pred             CeEEEEEEEcCCccceecEEEEEEcCc
Q psy3823         294 YGTLLCWARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       294 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~  320 (365)
                      .|.|+|.|.|..|.....+.|.|...+
T Consensus        82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          82 YALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             CEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            999999999999999999999887553

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.39  E-value=5.2e-12  Score=90.81  Aligned_cols=80  Identities=16%  Similarity=0.258  Sum_probs=61.5

Q ss_pred             eecCceEEEEEEEeeeCC-CceeEEEe-CCCCCCCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCC-ccceec
Q psy3823         236 ALRNEQVLVSCTVDANPQ-AQYFTWAF-NNSDTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQ-GSQRTP  311 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~-~~~~~W~~-~~~~~~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~-g~~~~~  311 (365)
                      +..|+.+.|.|.+.|.|. |. +.|++ ++........+... ..+...+.|.|.+++.+|+|.|+|.|.|.+ |....+
T Consensus        12 v~~G~~v~l~C~v~G~P~~p~-i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s   90 (96)
T cd05865          12 ISVGESKFFLCQVAGEAKDKD-ISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEAT   90 (96)
T ss_pred             ECCCCeEEEEEEEeCCCCCCE-EEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence            788999999999999985 67 99998 55433222223222 223345789999999999999999999997 888888


Q ss_pred             EEEEE
Q psy3823         312 CTFHV  316 (365)
Q Consensus       312 ~~l~v  316 (365)
                      +.|.|
T Consensus        91 ~~l~v   95 (96)
T cd05865          91 VNVKI   95 (96)
T ss_pred             EEEEE
Confidence            87765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.38  E-value=3.8e-12  Score=90.72  Aligned_cols=80  Identities=21%  Similarity=0.309  Sum_probs=63.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-   97 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-   97 (365)
                      .....+.+|++++|.|.+.+. .+ .+.|++++.. +..... ....+  ...|.|.+++.+|.|.|+|.|.|..|... 
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~-l~~~~~-~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSL-LVPPRL-QLSND--NRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CC-EEEEEECCEE-CCCCCE-EEeCC--CCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            345678899999999998888 88 9999999987 654332 22222  12799999999999999999999999765 


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      ..+.|.|
T Consensus        84 ~~~~L~V   90 (91)
T cd05740          84 DPYILNV   90 (91)
T ss_pred             eeEEEEe
Confidence            6777776

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.38  E-value=5.6e-12  Score=90.67  Aligned_cols=75  Identities=25%  Similarity=0.431  Sum_probs=60.3

Q ss_pred             cCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeec-CCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVT-RHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       134 ~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      .|+++.|.|.+.|+|.+. ++|+++|..+...........++.|.|.+.. ..|+|.|+|.|.|..|...++.+.|.
T Consensus        18 ~g~~v~l~C~a~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          18 PEEKVTLGCRARASPPAT-YRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             CCCeEEEEeEceeCCCCE-EEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence            357899999999999887 9999999998644334445556789998865 59999999999999998776665553

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.38  E-value=3.3e-12  Score=92.75  Aligned_cols=82  Identities=18%  Similarity=0.174  Sum_probs=66.9

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEe-c-----CCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI-Q-----DGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~-----~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ...+..|+.+.|.|.+.+.|.| .+.|+|++.. +......... .     ....++|.|.+++.+|+|.|+|.|.|..|
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~-l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g   89 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPP-QIRWLKDNRT-LIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA   89 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCC-ceEEEECCEE-CcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence            5667889999999999999999 9999999998 6654432211 1     12235899999999999999999999999


Q ss_pred             CCcccEEEEE
Q psy3823          95 NQRTPCTFHV  104 (365)
Q Consensus        95 ~~~~~~~l~V  104 (365)
                      ..+.++.|.|
T Consensus        90 ~~~~t~~l~V   99 (101)
T cd05859          90 VKSYTFALQI   99 (101)
T ss_pred             eEEEEEEEEE
Confidence            8888888876

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.38  E-value=2.2e-12  Score=87.66  Aligned_cols=71  Identities=17%  Similarity=0.275  Sum_probs=57.2

Q ss_pred             cEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          29 QVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        29 ~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      ++.|.|.+.|.|.| .++|+|++.. +..........++   .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p-~v~W~k~g~~-~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTP-TVKWVKNGDM-VIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCC-EEEEEECCeE-CCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899999999999 9999999987 5544433333334   5778899999999999999999999887777764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.38  E-value=6.7e-12  Score=88.31  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             ceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCC--Cce-eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         240 EQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRP--LTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       240 ~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~--~~~-~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +++.|.|.+.|.|.|. .+.|+++|.......  ... ........+.|.|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            4689999999999874 489999986543221  121 122223345799999999999999999999999999999999


Q ss_pred             EEcC
Q psy3823         316 VVKA  319 (365)
Q Consensus       316 v~~~  319 (365)
                      |..+
T Consensus        81 V~~~   84 (85)
T cd05854          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            8754

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.37  E-value=1.3e-12  Score=86.86  Aligned_cols=65  Identities=17%  Similarity=0.173  Sum_probs=54.7

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +.|.|.+.+.|.| .++|+|++.. +...        ...+.|.|.++..+|+|.|+|.|.|..|....++.+++
T Consensus         1 ~~l~c~v~g~P~P-~v~W~kdg~~-l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPP-EFQWYKDGKL-ISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCC-EEEEEECCEE-Cccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            4799999999999 9999999988 6521        12348999999999999999999999998777766665

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.37  E-value=4.4e-12  Score=87.58  Aligned_cols=76  Identities=20%  Similarity=0.263  Sum_probs=60.1

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      |+.+.|.|.+.|.|.|. +.|+++|..............  ....|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus         1 G~~~~l~C~~~g~P~p~-i~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   76 (76)
T cd04978           1 GETGRLDCEAEGIPQPT-ITWRLNGVPIEELPPDPRRRV--DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV   76 (76)
T ss_pred             CCeEEEEEEceeeCCCE-EEEEECCEECCCCCCcceEEc--cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence            68899999999999998 999998875433222211111  22459999999999999999999999999998888773

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.37  E-value=4e-12  Score=90.48  Aligned_cols=84  Identities=13%  Similarity=0.194  Sum_probs=65.2

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeC-CCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFN-NSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      ++....+.+|+++.|.|.+.+.|.  .++|+++ +.. +....+.....++....|.|.++..+|+|.|+|.|.|..|..
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~-~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEK-IVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             EecceEEcCCCeEEEEEEEEEeCC--eEEEEeCCCeE-ecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            345567889999999999888885  7999985 444 544444444455556789999999999999999999998876


Q ss_pred             c-ccEEEEE
Q psy3823          97 R-TPCTFHV  104 (365)
Q Consensus        97 ~-~~~~l~V  104 (365)
                      . .++.|.+
T Consensus        83 ~~~~i~l~~   91 (92)
T cd05866          83 QEATVVLEI   91 (92)
T ss_pred             EEEEEEEEE
Confidence            4 7777765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.37  E-value=8.9e-12  Score=90.34  Aligned_cols=79  Identities=18%  Similarity=0.253  Sum_probs=62.7

Q ss_pred             EecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-----eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-----SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      +..|+.++|.|.+.+.|.| .++|++++.. +.....     .....+...+.|.|.+++.+|+|.|+|.|.|..|....
T Consensus        14 ~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~-~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   91 (97)
T cd05869          14 MELEEQITLTCEASGDPIP-SITWRTSTRN-ISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ   91 (97)
T ss_pred             EEcCCCEEEEEEeeEeCCC-EEEEEECCcc-ccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence            4558999999998899999 9999998876 543211     11223344568999999999999999999999999888


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      ++.|.|
T Consensus        92 ~~~l~v   97 (97)
T cd05869          92 SMYLEV   97 (97)
T ss_pred             EEEEEC
Confidence            877764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.37  E-value=5.8e-12  Score=89.64  Aligned_cols=75  Identities=23%  Similarity=0.307  Sum_probs=61.1

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +.+|+.+.|.|.+.|.|.|. +.|++++...... .... .   ....|.|.+++.+|+|.|.|.|.|..|..+.+..|.
T Consensus        13 ~~~g~~v~l~C~~~g~P~p~-v~W~k~~~~~~~~-~~~~-~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   86 (88)
T cd04968          13 ALKGQNVTLECFALGNPVPQ-IKWRKVDGSMPSS-AEIS-M---SGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIY   86 (88)
T ss_pred             EeCCCcEEEEEEeeEeCCCE-EEEEECCCcCCCc-cEEE-E---eCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEE
Confidence            78999999999999999998 9999987643221 1111 1   223599999999999999999999999998888887


Q ss_pred             E
Q psy3823         316 V  316 (365)
Q Consensus       316 v  316 (365)
                      |
T Consensus        87 V   87 (88)
T cd04968          87 V   87 (88)
T ss_pred             E
Confidence            6

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.37  E-value=3.6e-12  Score=88.38  Aligned_cols=69  Identities=20%  Similarity=0.324  Sum_probs=56.8

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      |+++.|.|.+.+.|.| .++|++++.. +....+...........|.|.+++.+|.|.|+|.|.|..|...
T Consensus         1 G~~v~l~C~~~g~P~p-~v~W~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   69 (78)
T cd05743           1 GETVEFTCVATGVPTP-IINWRLNWGH-VPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVF   69 (78)
T ss_pred             CCEEEEEEEEEEecCC-EEEEEECCeE-CCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEE
Confidence            7899999998899999 9999999887 6554433333344456899999999999999999999998765

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.37  E-value=1.5e-11  Score=95.57  Aligned_cols=119  Identities=20%  Similarity=0.336  Sum_probs=83.8

Q ss_pred             eEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCC
Q psy3823         176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQA  254 (365)
Q Consensus       176 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~  254 (365)
                      +|.|.+++..|+|.|.|.+.+..+... ..+.|.|.          .+|.+........ ...|+.+.|.|.+.+. |.+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~l~v~----------~~P~v~~~~~~~~-~~~~~~~~L~C~a~g~~P~~   69 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQ-QIIQLSVS----------EPPRVRLSLEKLV-SMIEEPQTLICHIAGYYPLD   69 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCccee-eEEEEEEe----------cCCceEEeCCCce-eecCCcEEEEEEECCCCCCC
Confidence            688999999999999999998777654 67889998          8887764443322 3478889999999986 443


Q ss_pred             ceeEEEeCCCCCCCC---CCc-----eeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         255 QYFTWAFNNSDTAPR---PLT-----SYSIQDGST---SVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       255 ~~~~W~~~~~~~~~~---~~~-----~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      ..+.|+++|......   ...     .....+++.   +.|.+.....++.+.|+|.+.+..-
T Consensus        70 ~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          70 VQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             eEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            249999987542210   011     122344543   5677776666667899999988644

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.37  E-value=2.6e-12  Score=88.44  Aligned_cols=74  Identities=19%  Similarity=0.262  Sum_probs=55.8

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      +.|.|.+.|.|.|. +.|++++..........++........|.|.+++.+|+|.|.|.|.|..|..+..+.|.|
T Consensus         1 a~l~C~~~G~P~P~-v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQ-IAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCE-EEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            46899999999998 999998763222211112211112235899999999999999999999999999888877

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.37  E-value=7e-12  Score=90.89  Aligned_cols=84  Identities=17%  Similarity=0.200  Sum_probs=66.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-----eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-----SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      .....+.+|+++.|.|.+.+.|.+ .+.|++++.. +.....     .........+.|.|.+++.+|+|.|+|.|.|..
T Consensus         8 ~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   85 (96)
T cd05732           8 LENQTAVELEQITLTCEAEGDPIP-EITWRRATRN-FSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRI   85 (96)
T ss_pred             cCceeEecCCcEEEEEEEeEcCCC-cEEEEECCcc-cCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCC
Confidence            345678899999999998899999 9999999866 543211     122233445689999999999999999999999


Q ss_pred             CCCcccEEEEE
Q psy3823          94 GNQRTPCTFHV  104 (365)
Q Consensus        94 ~~~~~~~~l~V  104 (365)
                      |....++.|.|
T Consensus        86 G~~~~s~~l~v   96 (96)
T cd05732          86 GGDQQSMYLEV   96 (96)
T ss_pred             CCcEEEEEEeC
Confidence            99887777764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.37  E-value=6.7e-12  Score=87.17  Aligned_cols=78  Identities=12%  Similarity=0.208  Sum_probs=61.3

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      ....+.+|+.+.|.|.+.+. .+ .+.|+|++.. +........ ...   .|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~-l~~~~~~~~-~~~---~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~   74 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQ-LGENNRTRI-TGE---EVQIKDAVPRDSGLYACVTSSPSGSDTTY   74 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-Cc-eEEEeeCCcC-CCCCceEEE-eCC---EEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence            34678899999999997775 56 8999999988 765443332 222   79999999999999999999988877666


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      +.|+|
T Consensus        75 ~~v~V   79 (79)
T cd04973          75 FSVNV   79 (79)
T ss_pred             EEEeC
Confidence            66653

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.37  E-value=8.3e-12  Score=86.52  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=59.4

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      |+.+.|.|.+.|.|.|. +.|++++.... ...+......+....|.|.+++.+|+|.|+|.|.|..|.......+.
T Consensus         1 G~~v~l~C~~~g~P~p~-v~W~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPI-INWRLNWGHVP-DSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCE-EEEEECCeECC-CCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            68899999999999998 99999876432 22333444455567899999999999999999999999876555443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.36  E-value=4.1e-12  Score=90.10  Aligned_cols=79  Identities=22%  Similarity=0.442  Sum_probs=63.4

Q ss_pred             cceecCCcEEEEEEE-EecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         130 SVLNEGVDIYFDCHI-QANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~-~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      ..+.+|+++.|.|.+ .+.|.+. +.|++++..+...........++.|.|.++..+|+|.|+|.+.|..|...+..+.|
T Consensus         6 ~~~~~G~~v~l~C~~~~g~p~p~-i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l   84 (86)
T cd05724           6 TQVAVGEMAVLECSPPRGHPEPT-VSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARL   84 (86)
T ss_pred             EEEeCCCCEEEEEECCCCCCCCE-EEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEE
Confidence            467799999999998 5777776 99999999887543333333467899999999999999999999999876666655


Q ss_pred             E
Q psy3823         209 N  209 (365)
Q Consensus       209 ~  209 (365)
                      .
T Consensus        85 ~   85 (86)
T cd05724          85 S   85 (86)
T ss_pred             E
Confidence            4

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.36  E-value=4.2e-12  Score=86.83  Aligned_cols=73  Identities=18%  Similarity=0.348  Sum_probs=59.0

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      |+.+.|.|.+.|.|.|. +.|++++.... ...+..+..++   .|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~-v~W~k~~~~~~-~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPT-ISWSKGTELLT-NSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCE-EEEEECCEEcc-cCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            67899999999999998 99999886432 22333333333   4999999999999999999999999998888765

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.36  E-value=2.9e-12  Score=87.64  Aligned_cols=73  Identities=16%  Similarity=0.189  Sum_probs=57.8

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCC-ceeEe-cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPL-TSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +.|.|.+.|.|.| .++|+|++.. +.... ..... .+.....|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus         1 v~l~C~v~G~P~P-~v~W~k~~~~-l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHP-QIFWKKENES-LTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCC-EEEEEECCEE-CCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            5799999999999 9999999988 65432 22222 2223347999999999999999999999999887777764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.36  E-value=7.5e-12  Score=91.48  Aligned_cols=81  Identities=23%  Similarity=0.466  Sum_probs=60.1

Q ss_pred             ccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeC----CCCceEEeeceEEEee-----ecCCCCeEEEEEEEcCCC
Q psy3823         129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNN----ASAGRIITNQTLVLQS-----VTRHSGGLYACSAINSQG  199 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~----~~~~~~~~~~~l~i~~-----~~~~d~G~Y~C~~~~~~~  199 (365)
                      +..+.+|+.+.|.|.+.|.|.|. +.|+++|..+...    ........++.+.+..     +..+|+|.|+|.+.|..|
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G   88 (100)
T cd07693          10 DLIVSKGDPATLNCKAEGRPTPT-IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLG   88 (100)
T ss_pred             eeEEcCCCeEEEEeeCCcCCCCE-EEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcccc
Confidence            34688999999999999999887 9999999988652    1112223333333322     368999999999999999


Q ss_pred             CCCcccEEEEE
Q psy3823         200 EGGSTPFDLNI  210 (365)
Q Consensus       200 ~~~s~~~~l~v  210 (365)
                      ...+..+.|.|
T Consensus        89 ~~~s~~~~l~v   99 (100)
T cd07693          89 EAVSRNASLEV   99 (100)
T ss_pred             ceecceEEEEe
Confidence            86667777765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.36  E-value=7.9e-12  Score=89.84  Aligned_cols=74  Identities=23%  Similarity=0.393  Sum_probs=59.8

Q ss_pred             cCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeec-CCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVT-RHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       134 ~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      +|+.+.|.|.+.|.|.|. +.|+++|..+...........++.|.|.++. ..|+|.|+|.|.|..|...++.+.|
T Consensus        18 ~g~~v~l~C~~~G~P~P~-i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          18 DEKKVILNCEARGNPVPT-YRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             CCCEEEEEEEeeecCCCE-EEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            578999999999999987 9999999988643333344456789998875 6999999999999999776555544

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.35  E-value=4.4e-12  Score=87.31  Aligned_cols=74  Identities=22%  Similarity=0.296  Sum_probs=60.1

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |+.+.|.|.+.++|.| .|+|++++.. +..... .....++  ..|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P-~i~W~k~g~~-i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKP-SISWLTNGVP-IEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCC-eEEEEECCEE-ccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            7899999999999999 9999999988 643222 1111222  26889999999999999999999999988888877

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.35  E-value=4e-12  Score=86.31  Aligned_cols=70  Identities=19%  Similarity=0.305  Sum_probs=56.9

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +.|.|.+.+.|.| .+.|+|++.. +..........+   ..|.|.+++.+|.|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~L~C~~~G~P~P-~v~W~k~~~~-~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTP-EVHWDRIDGP-LSPNRTKKLNNN---KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCC-eEEEEECCcC-CCCCceeEEcCC---CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4799999999999 9999999887 544322222222   38999999999999999999999999888888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.35  E-value=3.1e-12  Score=88.36  Aligned_cols=75  Identities=17%  Similarity=0.211  Sum_probs=60.2

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |+.+.|.|.+.++|.| .+.|++++.. +........ .......|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p-~i~W~~~g~~-~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQP-TITWRLNGVP-IEELPPDPR-RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCC-EEEEEECCEE-CCCCCCcce-EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            7899999999899999 9999999987 544332111 1112237999999999999999999999999888888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.35  E-value=4.2e-12  Score=89.60  Aligned_cols=81  Identities=20%  Similarity=0.237  Sum_probs=66.0

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +....... ..++   .|.|.+++.+|.|.|+|.|.|..|...
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~~-~~~~~~~~-~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRP-AYRWLKNGQP-LASENRIE-VEAG---DLRITKLSLSDSGMYQCVAENKHGTIY   78 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCC-EEEEEECCEE-CCCCCeEE-EeCC---EEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence            3455678899999999999999999 9999999988 65443322 2333   799999999999999999999999877


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      .++.|+|
T Consensus        79 ~~~~l~V   85 (85)
T cd05728          79 ASAELAV   85 (85)
T ss_pred             EEEEEEC
Confidence            7777654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.34  E-value=1.6e-11  Score=87.07  Aligned_cols=81  Identities=15%  Similarity=0.243  Sum_probs=62.4

Q ss_pred             CceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCC-CceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ++....+.+|+++.|.|.+ .+.|.+ .+.|++++.. +... .......++   .|.|.+++.+|.|.|+|.|.|..|.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~-~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~   76 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQP-LNLDNERVRIVDDG---NLLIAEARKSDEGTYKCVATNMVGE   76 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEE-CCCCCCCEEEccCC---EEEEeECCcccCEEEEEEEEeccCc
Confidence            3456778899999999996 788999 9999999987 5542 222222233   7999999999999999999999887


Q ss_pred             Cc-ccEEEE
Q psy3823          96 QR-TPCTFH  103 (365)
Q Consensus        96 ~~-~~~~l~  103 (365)
                      .. ..+.|.
T Consensus        77 ~~s~~~~l~   85 (86)
T cd05724          77 RESAAARLS   85 (86)
T ss_pred             eeeeeEEEE
Confidence            64 455554

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.34  E-value=5.4e-12  Score=90.43  Aligned_cols=80  Identities=21%  Similarity=0.333  Sum_probs=61.7

Q ss_pred             EEEEecCCcEEEEEEeCC-----CCCcceEEEEeCCCcCCCCCC--ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          21 IYGALRNEQVLVSCTVDA-----NPQAQYFTWAFNNSGTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~-----~p~~~~v~W~~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      ...+.+|+.+.|.|.+.+     .|.+ .++|||++.. +....  ..+....  ...|.|.+++.+|+|.|+|.+.|..
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~-~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~   83 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGK-TPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNST   83 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCC-Ccccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCC
Confidence            455779999999999777     6888 9999999876 43221  1222221  2379999999999999999999999


Q ss_pred             CCCcccEEEEE
Q psy3823          94 GNQRTPCTFHV  104 (365)
Q Consensus        94 ~~~~~~~~l~V  104 (365)
                      +..+..+.|+|
T Consensus        84 g~~~~~~~L~v   94 (94)
T cd05756          84 YCMKVSISLTV   94 (94)
T ss_pred             ccEEEEEEEEC
Confidence            88877777764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.33  E-value=7.4e-12  Score=85.89  Aligned_cols=73  Identities=19%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCC-CceeEe-cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRP-LTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      ++|.|.+.+.|.| .+.|+|++.. +... ...... ......+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~L~C~v~G~P~P-~v~W~k~~~~-i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPP-QIFWKKNNEM-LTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCC-eEEEEECCEE-CCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            4799999999999 9999999988 6543 222222 2233447999999999999999999999998887777754

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.33  E-value=7.8e-12  Score=85.82  Aligned_cols=74  Identities=15%  Similarity=0.368  Sum_probs=58.0

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |+.+.|.|.+.+.|.+ .+.|++++...+..........++   +|.|.+++.+|.|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p-~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEP-AIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCC-EEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7899999998899999 999998544325444333333444   7999999999999999999999998877777664

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.33  E-value=8.1e-12  Score=84.80  Aligned_cols=70  Identities=20%  Similarity=0.422  Sum_probs=55.5

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      +.|.|.+.|.|.|. +.|++++......  .....  .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~L~C~~~G~P~P~-v~W~k~~~~~~~~--~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPE-VHWDRIDGPLSPN--RTKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCe-EEEEECCcCCCCC--ceeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            46899999999998 9999988644321  11111  12236999999999999999999999999998888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.33  E-value=9e-12  Score=85.35  Aligned_cols=72  Identities=21%  Similarity=0.433  Sum_probs=58.3

Q ss_pred             EEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc-eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         138 IYFDCHIQANPPYKKLIWTHNGITISNNASAG-RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      ++|.|.+.|.|.|. +.|++++.++......+ ....++.|.|.++...|+|.|+|.|.|..|...+..+.|.|
T Consensus         1 a~l~C~~~G~P~p~-v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPE-ITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCE-EEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            47999999999988 99999998886432222 23346689999999999999999999999987667777765

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.33  E-value=1.8e-11  Score=89.46  Aligned_cols=91  Identities=15%  Similarity=0.288  Sum_probs=62.7

Q ss_pred             CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC----CCceeEeeCCCEEEEEEc--CCCcccCeEE
Q psy3823         224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR----PLTSYSIQDGSTSVARYT--PTSELEYGTL  297 (365)
Q Consensus       224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~----~~~~~~~~~~~~s~l~i~--~v~~~d~G~Y  297 (365)
                      |.+...+.. ..+.+|+.+.|.|.+.|.|.|. +.|+++|......    ........++....+.+.  .+..+|+|.|
T Consensus         2 P~i~~~p~~-~~v~~G~~~~l~C~~~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           2 PRIVEHPSD-LIVSKGDPATLNCKAEGRPTPT-IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CeEEecCce-eEEcCCCeEEEEeeCCcCCCCE-EEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence            444443333 3388999999999999999998 9999998754331    111222334443334333  3468999999


Q ss_pred             EEEEEcCCcc-ceecEEEEE
Q psy3823         298 LCWARNEQGS-QRTPCTFHV  316 (365)
Q Consensus       298 ~C~a~n~~g~-~~~~~~l~v  316 (365)
                      +|.|.|..|. .+..+.|.|
T Consensus        80 ~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          80 VCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEccccceecceEEEEe
Confidence            9999999998 667777765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.32  E-value=1.2e-11  Score=87.09  Aligned_cols=75  Identities=19%  Similarity=0.397  Sum_probs=59.4

Q ss_pred             CcEEEEEEEEecCCCC-eeEEEeCCeEEeeCCC--Cc-eE---EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         136 VDIYFDCHIQANPPYK-KLIWTHNGITISNNAS--AG-RI---ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       136 ~~v~l~C~~~~~p~~~-~i~W~~~~~~l~~~~~--~~-~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      +.++|.|.+.|.|.|. .+.|++||..+.....  .. ..   ...++|.|.+++..|+|.|+|.|.|..|... ..+.|
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~-~~~~L   79 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS-ASATL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE-EEEEE
Confidence            4689999999998774 4899999998864321  11 11   1346899999999999999999999998766 67888


Q ss_pred             EEe
Q psy3823         209 NIN  211 (365)
Q Consensus       209 ~v~  211 (365)
                      .|.
T Consensus        80 ~V~   82 (85)
T cd05854          80 VVR   82 (85)
T ss_pred             EEE
Confidence            887

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.32  E-value=4.8e-12  Score=85.44  Aligned_cols=68  Identities=18%  Similarity=0.311  Sum_probs=55.4

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTF  102 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l  102 (365)
                      +.|.|.+.+.|.+ .++|+|++.. +..........++   .|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p-~i~W~k~g~~-~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEP-TITWNKDGVQ-VTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCC-EEEEEECCEE-CCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            5799999899999 9999999987 6544433333333   79999999999999999999999988766665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.32  E-value=1.6e-11  Score=84.72  Aligned_cols=72  Identities=17%  Similarity=0.319  Sum_probs=53.8

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      ++|.|.+.|.|.|. +.|+++|...........+...  ...|.|.+++.+|+|.|.|.|.|..|....+..++|
T Consensus         1 v~L~C~~~g~P~p~-v~W~k~g~~l~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760           1 VTLRCHIDGHPRPT-YQWFRDGTPLSDGQGNYSVSSK--ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             CEEEEEeeecCCCc-EEEEECCEECCCCCccEEEeCC--CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            47999999999998 9999998754332222233222  236999999999999999999999998754444444

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.32  E-value=1.7e-11  Score=87.73  Aligned_cols=84  Identities=14%  Similarity=0.161  Sum_probs=61.5

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeC-CCcCCCC-CCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFN-NSGTAPR-PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~-~~~~l~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ++....+.+|+++.|.|.+.+.| + .++|+++ +.. +.. ............+.|+|.+++.+|.|.|+|.|.|..|.
T Consensus         6 ~p~~~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977           6 VPSQGEISVGESKFFLCQVIGEP-K-DISWFSPNGEK-LVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             ecCcEEECCCCeEEEEEEeEeeC-C-eEEEECCCCCE-eccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence            44556789999999999987876 5 8999984 444 433 22222234445678999999999999999999998654


Q ss_pred             -CcccEEEEE
Q psy3823          96 -QRTPCTFHV  104 (365)
Q Consensus        96 -~~~~~~l~V  104 (365)
                       ...++.|.|
T Consensus        83 ~~~~sv~l~~   92 (92)
T cd04977          83 ESEATVNLKI   92 (92)
T ss_pred             cceeEEEEEC
Confidence             446666653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.32  E-value=1e-11  Score=85.53  Aligned_cols=69  Identities=22%  Similarity=0.478  Sum_probs=54.6

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      ..+.+|++|+|.|.+.+.|.+..+.|++||..+..        ....|.|.++ .+|+|.|+|++.+.   ..+..+.|+
T Consensus        10 ~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~--------~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~l~   77 (78)
T cd05752          10 TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET--------TTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVHLE   77 (78)
T ss_pred             eEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec--------cCCeEEEeec-ccCCEEeEEECCCC---cCCCCEEEe
Confidence            46789999999999998876655999999998742        3468899999 99999999999875   333455554


Q ss_pred             E
Q psy3823         210 I  210 (365)
Q Consensus       210 v  210 (365)
                      |
T Consensus        78 V   78 (78)
T cd05752          78 V   78 (78)
T ss_pred             C
Confidence            3

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.31  E-value=8.9e-12  Score=85.53  Aligned_cols=74  Identities=15%  Similarity=0.381  Sum_probs=57.0

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      |+.+.|.|.+.|.|.|. +.|++++..............++   .|.|..+..+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~-v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPA-IHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCE-EEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            68899999999999998 99997544333322323322332   4889999999999999999999999988877764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.31  E-value=2.5e-11  Score=88.17  Aligned_cols=79  Identities=18%  Similarity=0.251  Sum_probs=61.3

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC-CceeEee----CCCEEEEEEcCCCccc-CeEEEEEEEcCCccce
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP-LTSYSIQ----DGSTSVARYTPTSELE-YGTLLCWARNEQGSQR  309 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~-~~~~~~~----~~~~s~l~i~~v~~~d-~G~Y~C~a~n~~g~~~  309 (365)
                      +..|+.+.|.|.+.|.|.|..+.|++++....... .++.+..    .+..+.|.|.++..+| .|.|.|.|.|..|..+
T Consensus        13 ~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~   92 (98)
T cd05758          13 AILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGT   92 (98)
T ss_pred             EeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCccc
Confidence            78999999999999999983399999886443322 2333322    2345689999999855 8999999999999988


Q ss_pred             ecEEE
Q psy3823         310 TPCTF  314 (365)
Q Consensus       310 ~~~~l  314 (365)
                      ..+.|
T Consensus        93 ~~~~L   97 (98)
T cd05758          93 AIISL   97 (98)
T ss_pred             EEEEe
Confidence            87665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.31  E-value=9.3e-12  Score=85.63  Aligned_cols=74  Identities=16%  Similarity=0.231  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +.|.|.+.+.|.| .++|+|++....................|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4799999999999 9999999864132222111111111237999999999999999999999998888888876

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.31  E-value=1.4e-11  Score=86.92  Aligned_cols=77  Identities=19%  Similarity=0.403  Sum_probs=63.2

Q ss_pred             ccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      +..+..|+.+.|.|.+.|.|.|. +.|++++..+...  ......++.|.|.++..+|+|.|+|.|.|..|... ..+.|
T Consensus         8 ~~~~~~G~~~~l~C~~~g~p~p~-v~W~k~g~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l   83 (85)
T cd05728           8 DTEADIGSSLRWECKASGNPRPA-YRWLKNGQPLASE--NRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIY-ASAEL   83 (85)
T ss_pred             ccEEcCCCcEEEEEEeeEeCCCE-EEEEECCEECCCC--CeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEE-EEEEE
Confidence            34678999999999999999887 9999999987542  23445678999999999999999999999999654 44554


Q ss_pred             E
Q psy3823         209 N  209 (365)
Q Consensus       209 ~  209 (365)
                      .
T Consensus        84 ~   84 (85)
T cd05728          84 A   84 (85)
T ss_pred             E
Confidence            4

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.30  E-value=9.6e-12  Score=87.29  Aligned_cols=80  Identities=15%  Similarity=0.231  Sum_probs=62.8

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPC  100 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~  100 (365)
                      .+.+..|+++.|.|.+.+.|.+ .+.|++++.. +.......  .......|.|.+++.+|+|.|+|.|.|..|....++
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~-~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   78 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRP-DITWLKDNKP-LTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY   78 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCC-cEEEEECCcC-CcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence            3456789999999998889999 9999999987 54332211  122335899999999999999999999998877766


Q ss_pred             EEEE
Q psy3823         101 TFHV  104 (365)
Q Consensus       101 ~l~V  104 (365)
                      .|.|
T Consensus        79 ~v~v   82 (82)
T cd05856          79 KVDV   82 (82)
T ss_pred             EEeC
Confidence            6653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.30  E-value=2.8e-11  Score=84.86  Aligned_cols=77  Identities=17%  Similarity=0.305  Sum_probs=60.8

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      ...|+.+.|.|.+.+.|.|. +.|++++........ .  ........|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         6 ~~~G~~v~L~C~~~g~p~p~-i~W~k~~~~~~~~~~-~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           6 RPVGSSVRLKCVASGNPRPD-ITWLKDNKPLTPTEI-G--ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             ccCCCeEEEEEEeeEeCCCc-EEEEECCcCCcCCcc-c--eecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            66799999999999999998 999998875432211 1  1222345799999999999999999999999988777765


Q ss_pred             E
Q psy3823         316 V  316 (365)
Q Consensus       316 v  316 (365)
                      |
T Consensus        82 v   82 (82)
T cd05856          82 V   82 (82)
T ss_pred             C
Confidence            4

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.30  E-value=1.5e-11  Score=83.38  Aligned_cols=70  Identities=19%  Similarity=0.220  Sum_probs=56.0

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      +.|.|.+.|.|+|. +.|+++|...... .  +....  ...|.|.+++.+|+|.|+|.|.|..|..+.++.++|.
T Consensus         1 ~~l~c~v~g~P~p~-v~W~k~g~~l~~~-~--~~~~~--~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPE-IQWYKNGKLISEK-N--RTKKS--GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCE-EEEEECCEECCCC-C--EEEcC--CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            46899999999998 9999998754332 1  22222  2459999999999999999999999998888888764

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.29  E-value=1.6e-11  Score=82.59  Aligned_cols=69  Identities=16%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      +.|.|.+.|.|.|. +.|+++|......   .... .+  ..|.|.++..+|+|.|+|.|.|..|..+...+++++
T Consensus         1 ~~~~c~v~G~P~P~-v~W~k~g~~l~~~---~~~~-~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPE-VKWYKNGQLIVLN---HTFK-RG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCE-EEEEECCEECCCC---CEEc-cC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            36899999999998 9999998754322   1111 12  359999999999999999999999988777777664

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.29  E-value=2.4e-11  Score=85.83  Aligned_cols=80  Identities=18%  Similarity=0.199  Sum_probs=60.4

Q ss_pred             ceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCC--ce-eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         240 EQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPL--TS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       240 ~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~--~~-~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +.+.|.|.+.+.|.|. .+.|+++|........  .. ........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            4689999999998874 3799998875432211  11 111122344699999999999999999999999999999998


Q ss_pred             EEcC
Q psy3823         316 VVKA  319 (365)
Q Consensus       316 v~~~  319 (365)
                      |..+
T Consensus        81 V~~p   84 (85)
T cd04970          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            8764

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.29  E-value=2.4e-11  Score=86.78  Aligned_cols=77  Identities=21%  Similarity=0.255  Sum_probs=60.3

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCC-------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                      |+.+.|.|.+.+.|.|. +.|+++|.....       ...++....+   ..|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         1 G~~v~L~C~~~g~P~p~-v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   76 (90)
T cd05726           1 GRTVTFQCEATGNPQPA-IFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILTK   76 (90)
T ss_pred             CCEEEEEEECCccCCCE-EEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence            68899999999999998 999998763211       1112222222   259999999999999999999999999999


Q ss_pred             EEEEEEcC
Q psy3823         312 CTFHVVKA  319 (365)
Q Consensus       312 ~~l~v~~~  319 (365)
                      +.|.|...
T Consensus        77 ~~l~V~~~   84 (90)
T cd05726          77 AYLEVTDV   84 (90)
T ss_pred             EEEEEeec
Confidence            99988743

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.29  E-value=6.4e-11  Score=84.78  Aligned_cols=79  Identities=20%  Similarity=0.264  Sum_probs=63.2

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-CCceeE----eeCCCEEEEEEcCCCccc-CeEEEEEEEcCCccce
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-PLTSYS----IQDGSTSVARYTPTSELE-YGTLLCWARNEQGSQR  309 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-~~~~~~----~~~~~~s~l~i~~v~~~d-~G~Y~C~a~n~~g~~~  309 (365)
                      +..|+.+.|.|.+.+.|+|..+.|.+++...... ..++.+    ...+..+.|.|.++...| .|.|.|.|.|.+|+.+
T Consensus        13 ~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~   92 (98)
T cd05898          13 AVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGT   92 (98)
T ss_pred             EeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccce
Confidence            8899999999999999988778998887643332 234433    234678999999998777 7999999999999998


Q ss_pred             ecEEE
Q psy3823         310 TPCTF  314 (365)
Q Consensus       310 ~~~~l  314 (365)
                      ..++|
T Consensus        93 ~~i~L   97 (98)
T cd05898          93 AIIQL   97 (98)
T ss_pred             EEEEe
Confidence            87766

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.29  E-value=1.6e-11  Score=82.90  Aligned_cols=69  Identities=19%  Similarity=0.342  Sum_probs=55.4

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      ++|.|.+.+.|.+ .+.|+|++.. +..... ......   .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p-~v~W~k~~~~-~~~~~~-~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVP-TVLWRKEDGE-LPKGRA-EILDDK---SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCC-EEEEEECCcc-CCCCcE-EEeeCC---EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            4799999999999 9999999877 644332 222333   7999999999999999999999998877777654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.29  E-value=1.2e-11  Score=83.93  Aligned_cols=69  Identities=17%  Similarity=0.160  Sum_probs=55.9

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +.|.|.+.+.|.+ .+.|+|++.. +..... .....   ..|.|.+++.+|+|.|+|.|.|..|.....+.+.+
T Consensus         1 ~~l~c~v~g~P~p-~v~W~k~g~~-l~~~~~-~~~~~---~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPP-EIQWYKNGKL-ISEKNR-TKKSG---HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCC-EEEEEECCEE-CCCCCE-EEcCC---CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            4699999999999 9999999988 665432 22222   37999999999999999999999988776666665

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.28  E-value=1.2e-11  Score=83.53  Aligned_cols=68  Identities=16%  Similarity=0.299  Sum_probs=53.8

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      +.|.|.+.|.|.|. +.|+++|.... ......+..+   ..|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~-i~W~k~g~~~~-~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPT-ITWNKDGVQVT-ESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCE-EEEEECCEECC-CCCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            47999999999998 99999876432 2223333222   359999999999999999999999999887765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.28  E-value=2.5e-11  Score=83.28  Aligned_cols=70  Identities=19%  Similarity=0.275  Sum_probs=55.4

Q ss_pred             EEEEeCCCCCcceEEEEeCCCcCCCCCCceeE----e-cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEE
Q psy3823          32 VSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS----I-QDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFH  103 (365)
Q Consensus        32 l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~----~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~  103 (365)
                      |.|.+.|+|.| .++|+|++.. +........    . .......|.|.++..+|+|.|+|.|.|..|..+.++.+.
T Consensus         3 i~~~v~G~P~P-ti~W~kng~~-l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKP-TLQWFHEGAI-LNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCC-ceEEEECCEE-CCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            67899999999 9999999998 765443211    1 112345899999999999999999999999888777664

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.28  E-value=3.1e-11  Score=86.22  Aligned_cols=75  Identities=21%  Similarity=0.263  Sum_probs=59.1

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCC-------CCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAP-------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~-------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      |+.+.|.|.+.+.|.+ .+.|++++...+.       .........++   .|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   76 (90)
T cd05726           1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILTK   76 (90)
T ss_pred             CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence            7899999999899999 9999998865111       11111111233   79999999999999999999999998888


Q ss_pred             EEEEEE
Q psy3823         100 CTFHVV  105 (365)
Q Consensus       100 ~~l~V~  105 (365)
                      +.|.|.
T Consensus        77 ~~l~V~   82 (90)
T cd05726          77 AYLEVT   82 (90)
T ss_pred             EEEEEe
Confidence            999984

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.27  E-value=3.3e-11  Score=83.20  Aligned_cols=73  Identities=30%  Similarity=0.533  Sum_probs=56.4

Q ss_pred             EEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceE-EeeceEEEeeecCCCCeEEEEEEEcCCCCCC-cccEEEEEe
Q psy3823         138 IYFDCHIQANPPYKKLIWTHNGITISNNASAGRI-ITNQTLVLQSVTRHSGGLYACSAINSQGEGG-STPFDLNIN  211 (365)
Q Consensus       138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-s~~~~l~v~  211 (365)
                      |+|.|.+.|.|.|. +.|+++|.++......... .....|.|.++..+|+|.|.|.+.|..|... +..+.|.|.
T Consensus         1 v~L~C~~~g~P~p~-v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPT-YQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCc-EEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            57999999999888 9999999988653322112 2246899999999999999999999999653 355666654

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.27  E-value=2.1e-11  Score=82.97  Aligned_cols=70  Identities=20%  Similarity=0.339  Sum_probs=55.2

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      +.|.|.+.|.|.|. +.|++++.....  .....  ......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~~~g~P~p~-v~W~k~~~~~~~--~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPE-ISWIKIGGELPA--DRTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCe-EEEEECCeECCC--CceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            47899999999998 999998764322  11111  122346999999999999999999999999988888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>KOG3515|consensus

Probab=99.27  E-value=1.7e-10  Score=109.03  Aligned_cols=273  Identities=17%  Similarity=0.161  Sum_probs=177.4

Q ss_pred             EeecccCCeEeeCCceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeE----ecCCeEEEEEEccCCC
Q psy3823           5 IFNSTDEPVCKQSQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYS----IQDGSTSVARYTPTSE   79 (365)
Q Consensus         5 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~----~~~~~~~~l~i~~~~~   79 (365)
                      ++.+++.|.+..+......+..|+...+.|. ..++|.. .+.|+++... .........    ........+.......
T Consensus       293 ~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~-~i~w~~~~~~-~~~~~~~~~~t~~~~~v~~~~~~~q~~~~  370 (741)
T KOG3515|consen  293 ITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPA-HIAWYKDTKM-PKGSQKASSKTSNMGGVAVISHYAQPSSQ  370 (741)
T ss_pred             eeecccccccccccCcccccccccccccceeccCCCCcc-ceeeeccCcc-cccccCcccCCCcccceeeEEeeecccch
Confidence            5667888888888777777899999999999 7788888 9999997665 433222111    1222333566677788


Q ss_pred             CCCeEEEEEEEeCCCCCc--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe
Q psy3823          80 LEYGTLLCWARNEQGNQR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH  157 (365)
Q Consensus        80 ~d~G~Y~C~a~~~~~~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~  157 (365)
                      .|.|.|+|.+.+......  ..+.+.+         .++|.+-..-.   ......+++.....-.+.++|....+.|.+
T Consensus       371 ~~~g~v~c~a~~~~~~~~sss~~~l~~---------l~~p~~L~~~~---~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~  438 (741)
T KOG3515|consen  371 QDGGQVTCPADNLELAHSSSSSFLLPV---------LPSPAFLVRHK---TAVVAMEQDHQAAPLPVRGAPAERTFYWTF  438 (741)
T ss_pred             hcCceEEccccccccccccccceeccc---------cCCchhhhhcc---cceeeccCccccccCcccCCCcccchhhee
Confidence            999999999988775444  4455555         44443222111   223344555555554444777776699999


Q ss_pred             CCeEEeeCCCCceE--EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceee
Q psy3823         158 NGITISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG  235 (365)
Q Consensus       158 ~~~~l~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~  235 (365)
                      ++..+.........  .....+.+.++.+.|.|.|.|.+.|..|... ..+.+.+.          +.|.+........ 
T Consensus       439 ~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~-~~~~~~~~----------~sp~~~~~~~~~~-  506 (741)
T KOG3515|consen  439 RLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQ-AYLLLGVH----------TSPHNHHLQDQVE-  506 (741)
T ss_pred             cceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCcee-eEEeeccc----------cCCcccccccccc-
Confidence            88777654432222  2233444777999999999999999998766 44555666          7777765554433 


Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCCce-eEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~~~-~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      ...+.++.+.|..+..+... .+.|.+.+.......+.. ..........+.+.....--++.|.|.+.+
T Consensus       507 ~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~  576 (741)
T KOG3515|consen  507 GATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG  576 (741)
T ss_pred             cCCCCcccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecC
Confidence            55667799999998776544 699998775432222111 111122233466666655567899999999

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.27  E-value=3.4e-11  Score=86.20  Aligned_cols=73  Identities=22%  Similarity=0.340  Sum_probs=58.8

Q ss_pred             CCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeec-CCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVT-RHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       135 g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      |..+.|.|.+.|.|.|. ++|++++..+.... .+....++.|.|.++. ..|+|.|.|.|.|..|...++.+.|.
T Consensus        19 ~~~v~l~C~a~G~P~P~-i~W~k~~~~i~~~~-~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          19 EGKVSVNCRARANPFPI-YKWRKNNLDIDLTN-DRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             CCeEEEeCcCccCCCCE-EEEEECCEEccCCC-CeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence            45799999999999987 99999998885422 2344557899999885 58999999999999998776665553

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.27  E-value=1.5e-11  Score=83.68  Aligned_cols=70  Identities=21%  Similarity=0.373  Sum_probs=55.7

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +.|.|.+.+.|.| .+.|++++.. +........   .....|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p-~v~W~k~~~~-~~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTP-EISWIKIGGE-LPADRTKFE---NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCC-eEEEEECCeE-CCCCceeEe---cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4799999899999 9999999877 543322111   12237999999999999999999999998877777776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.27  E-value=4.2e-11  Score=82.15  Aligned_cols=72  Identities=17%  Similarity=0.245  Sum_probs=54.5

Q ss_pred             EEEEEEeeeCCCceeEEEeCCCCCCCCCCc-eeEe---eCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         243 LVSCTVDANPQAQYFTWAFNNSDTAPRPLT-SYSI---QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       243 ~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~-~~~~---~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      .|.|.+.|.|.|. +.|+++|......... ..+.   .....+.|.|.++..+|+|.|+|.|.|..|+++.++.+.
T Consensus         2 ~i~~~v~G~P~Pt-i~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPT-LQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCc-eEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            3679999999999 9999999755332211 1111   112345799999999999999999999999998877664

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.26  E-value=2.5e-11  Score=84.58  Aligned_cols=75  Identities=16%  Similarity=0.268  Sum_probs=57.5

Q ss_pred             CcEEEEEEeCC--CCCcceEEEEeCCCcCCCCC--CceeEecC--CeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEE
Q psy3823          28 EQVLVSCTVDA--NPQAQYFTWAFNNSGTAPRP--LTSYSIQD--GSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCT  101 (365)
Q Consensus        28 ~~~~l~C~~~~--~p~~~~v~W~~~~~~~l~~~--~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~  101 (365)
                      +++.|.|.+..  .++. .+.|++|+.. +...  ...+....  ...+.|.|.+++..|+|+|+|.|.+..+....+..
T Consensus         1 ~~~~l~C~v~~d~~l~~-~~~W~~dg~~-i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~   78 (85)
T cd05853           1 ESIVLPCQVSHDHSLDI-VFTWSFNGHL-IDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD   78 (85)
T ss_pred             CcEEEEEEeccCCCCCc-EEEEEECCEE-CcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence            57899999655  4466 9999999998 7521  11122211  12348999999999999999999999999999999


Q ss_pred             EEE
Q psy3823         102 FHV  104 (365)
Q Consensus       102 l~V  104 (365)
                      |.|
T Consensus        79 L~V   81 (85)
T cd05853          79 LIV   81 (85)
T ss_pred             EEE
Confidence            998

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.26  E-value=8.1e-11  Score=84.55  Aligned_cols=72  Identities=21%  Similarity=0.381  Sum_probs=53.5

Q ss_pred             cCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE-eeCCCEEEEEEcCCC-cccCeEEEEEEEcCCccce-ecEEE
Q psy3823         238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS-IQDGSTSVARYTPTS-ELEYGTLLCWARNEQGSQR-TPCTF  314 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~s~l~i~~v~-~~d~G~Y~C~a~n~~g~~~-~~~~l  314 (365)
                      .|+.+.|.|.+.|.|.|. +.|+++|....... ..++ ..++   .|.|.++. .+|+|.|.|.|.|..|... ..+.|
T Consensus        18 ~g~~v~l~C~~~G~P~P~-i~W~k~g~~l~~~~-~~~~~~~~g---~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          18 DEKKVILNCEARGNPVPT-YRWLRNGTEIDTES-DYRYSLIDG---NLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             CCCEEEEEEEeeecCCCE-EEEEECCeECccCC-CceEEeeCC---eEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            478999999999999998 99999987543222 2222 2233   47888874 6999999999999999873 34443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.26  E-value=4e-11  Score=85.55  Aligned_cols=76  Identities=21%  Similarity=0.243  Sum_probs=57.9

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCC----CcCCC-CCCce-eEe-------cCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNN----SGTAP-RPLTS-YSI-------QDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~----~~~l~-~~~~~-~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      |+.++|.|.+.+.|.| .++|+|++    .. +. ..... ...       ..+....|.|.+++.+|+|.|+|.|.|..
T Consensus         1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   78 (90)
T cd04974           1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSK-YGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI   78 (90)
T ss_pred             CCcEEEEEEEeCCCCC-eEEEEEecccCCce-eCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence            7899999999999999 99999964    22 21 11110 000       11233489999999999999999999999


Q ss_pred             CCCcccEEEEE
Q psy3823          94 GNQRTPCTFHV  104 (365)
Q Consensus        94 ~~~~~~~~l~V  104 (365)
                      |....++.|+|
T Consensus        79 G~~~~sa~L~V   89 (90)
T cd04974          79 GPSHHSAWLTV   89 (90)
T ss_pred             CcccCCEEEEe
Confidence            99989999887

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.26  E-value=2.1e-11  Score=82.01  Aligned_cols=68  Identities=15%  Similarity=0.085  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +.|.|.+.++|.| .++|+|++.. +.....  ...+   ..|.|.++..+|+|.|+|.|.|..|..+...++++
T Consensus         1 ~~~~c~v~G~P~P-~v~W~k~g~~-l~~~~~--~~~~---~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPP-EVKWYKNGQL-IVLNHT--FKRG---VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCC-EEEEEECCEE-CCCCCE--EccC---CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            4689999999999 9999999998 654322  1122   37999999999999999999999997775555544

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.26  E-value=7.8e-11  Score=84.33  Aligned_cols=78  Identities=15%  Similarity=0.239  Sum_probs=56.9

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc-ceecEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGS-QRTPCT  313 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~  313 (365)
                      +..|+.+.|.|.+.|.|+ . +.|++.+............ ......+.|.|.+++.+|+|.|+|.|.|..|. ...++.
T Consensus        12 v~~G~~~~l~C~~~G~p~-~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~   89 (92)
T cd04977          12 ISVGESKFFLCQVIGEPK-D-ISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVN   89 (92)
T ss_pred             ECCCCeEEEEEEeEeeCC-e-EEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEE
Confidence            889999999999999864 6 9999743322222222222 33345678999999999999999999999754 556655


Q ss_pred             EE
Q psy3823         314 FH  315 (365)
Q Consensus       314 l~  315 (365)
                      |.
T Consensus        90 l~   91 (92)
T cd04977          90 LK   91 (92)
T ss_pred             EE
Confidence            54

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.26  E-value=3e-11  Score=83.92  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=55.2

Q ss_pred             EEEEeCCCCCcceEEEEeCCCcCCCCCCcee--Ee-----cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEE
Q psy3823          32 VSCTVDANPQAQYFTWAFNNSGTAPRPLTSY--SI-----QDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFH  103 (365)
Q Consensus        32 l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~--~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~  103 (365)
                      |.|.+.++|.| .++|+|++.. +.......  ..     .....+.|.|.+++.+|+|.|+|.|.|..|..+..+.++
T Consensus         3 i~~~v~G~P~P-~v~W~k~g~~-i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKP-TLTWYHNGAV-LNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCC-cEEEEECCEE-CcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            68999999999 9999999988 65443221  11     123355799999999999999999999999988777665

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.26  E-value=3e-11  Score=81.57  Aligned_cols=69  Identities=17%  Similarity=0.317  Sum_probs=54.5

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      +.|.|.+.|.|+|. +.|++++....  .........   ..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~~~g~P~p~-v~W~k~~~~~~--~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPT-VLWRKEDGELP--KGRAEILDD---KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCE-EEEEECCccCC--CCcEEEeeC---CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            47899999999998 99999865332  222333222   25999999999999999999999999988877764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.26  E-value=3.4e-11  Score=82.46  Aligned_cols=70  Identities=20%  Similarity=0.353  Sum_probs=55.0

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCC--CceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC-cccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRP--LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ-RTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~-~~~~~l~V  104 (365)
                      ++|.|.+.++|.| .++|+|++.. +...  .......++   .|.|.+++.+|+|.|+|.|.|..|.. .....|.|
T Consensus         1 a~l~C~~~G~P~p-~v~W~k~~~~-~~~~~~~~~~~~~~g---~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDP-EITWFKDFLP-VDTTSNGRIKQLRSG---ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCC-EEEEEECCEE-CccCCCCCEEEcCCc---EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4799999999999 9999999887 6532  222222333   69999999999999999999999875 36677765

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.26  E-value=5.8e-11  Score=82.49  Aligned_cols=72  Identities=18%  Similarity=0.259  Sum_probs=54.9

Q ss_pred             EEEEEEeeeCCCceeEEEeCCCCCCCCCCce-eEe-----eCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         243 LVSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YSI-----QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       243 ~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~-~~~-----~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      .|.|.+.|.|.|. +.|+++|.......... ...     .....+.|.|.+++.+|+|.|+|.|.|..|..+.++.+.
T Consensus         2 ~i~~~v~G~P~P~-v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPT-LTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCc-EEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            3689999999999 99999987554322111 111     123356799999999999999999999999998877664

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.26  E-value=4.6e-11  Score=85.25  Aligned_cols=76  Identities=18%  Similarity=0.177  Sum_probs=57.6

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCC----CcCCCCCCc--eeEe-------cCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNN----SGTAPRPLT--SYSI-------QDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~----~~~l~~~~~--~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      |+.+.|.|.+.+.|.| .+.|++++    .. +.....  ....       .....++|.|.+++.+|+|.|+|.|.|..
T Consensus         1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   78 (90)
T cd05858           1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSK-YGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI   78 (90)
T ss_pred             CCeEEEEEEEecCCCC-EEEEEEecccCCcE-eCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence            7899999999999999 99999853    32 221111  0111       11123589999999999999999999999


Q ss_pred             CCCcccEEEEE
Q psy3823          94 GNQRTPCTFHV  104 (365)
Q Consensus        94 ~~~~~~~~l~V  104 (365)
                      |....+..|.|
T Consensus        79 G~~~~~a~L~V   89 (90)
T cd05858          79 GISHHSAWLTV   89 (90)
T ss_pred             CcccceEEEEE
Confidence            99888888887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.25  E-value=5.6e-11  Score=84.82  Aligned_cols=77  Identities=19%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCC----CCCCCC-CCceeEe-------eCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNN----SDTAPR-PLTSYSI-------QDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~----~~~~~~-~~~~~~~-------~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      |+.+.|.|.+.|.|.|. +.|++++    ...... .......       .+...+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~~g~P~P~-i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVYSDAQPH-IQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEecCCCCE-EEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            67899999999999998 9999853    211111 1111111       112236799999999999999999999999


Q ss_pred             cceecEEEEE
Q psy3823         307 SQRTPCTFHV  316 (365)
Q Consensus       307 ~~~~~~~l~v  316 (365)
                      ....++.|.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            9999888877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.25  E-value=8.8e-11  Score=85.28  Aligned_cols=83  Identities=16%  Similarity=0.165  Sum_probs=63.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC--ceeEe----cCCeEEEEEEccCCC-CCCeEEEEEEEe
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL--TSYSI----QDGSTSVARYTPTSE-LEYGTLLCWARN   91 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~--~~~~~----~~~~~~~l~i~~~~~-~d~G~Y~C~a~~   91 (365)
                      .....+.+|+.+.|.|.+.+.|.+..+.|++++.. +....  .....    ..+..+.|.|.++.. +|.|.|+|.|.|
T Consensus         8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~-i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N   86 (98)
T cd05758           8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENE-LESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWN   86 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEE-ccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEc
Confidence            34556799999999999989999835999999987 65432  22211    123456899999998 558999999999


Q ss_pred             CCCCCcccEEE
Q psy3823          92 EQGNQRTPCTF  102 (365)
Q Consensus        92 ~~~~~~~~~~l  102 (365)
                      ..|.....+.|
T Consensus        87 ~~G~~~~~~~L   97 (98)
T cd05758          87 SFGSGTAIISL   97 (98)
T ss_pred             CCCcccEEEEe
Confidence            99988776665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.25  E-value=3.1e-11  Score=85.24  Aligned_cols=75  Identities=23%  Similarity=0.478  Sum_probs=58.9

Q ss_pred             CcEEEEEEEEecCCCC-eeEEEeCCeEEeeCCCCc------eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         136 VDIYFDCHIQANPPYK-KLIWTHNGITISNNASAG------RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       136 ~~v~l~C~~~~~p~~~-~i~W~~~~~~l~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      +++.|.|.+.+.|.+. .+.|+++|..+.......      .....+.|.|.+++..|+|.|+|.|.|..|... ..+.|
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-~~~~l   79 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS-ASADL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE-EEEEE
Confidence            4689999999988764 378999999886432211      112357899999999999999999999998765 67888


Q ss_pred             EEe
Q psy3823         209 NIN  211 (365)
Q Consensus       209 ~v~  211 (365)
                      .|.
T Consensus        80 ~V~   82 (85)
T cd04970          80 IVR   82 (85)
T ss_pred             EEE
Confidence            887

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.25  E-value=3.4e-11  Score=81.01  Aligned_cols=68  Identities=16%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTF  102 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l  102 (365)
                      |+.++|.|.+.+.|.| .|+|+|++.. +..... .....   ..|.|.+++  |.|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P-~v~W~k~g~~-l~~~~~-~~~~~---~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMP-YVKWMKGGEE-LTKEDE-MPVGR---NVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCC-EEEEEECCEE-CCCccc-eecCc---cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            7899999999999999 9999999987 654332 11122   268888874  7999999999999977665554

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.25  E-value=2.5e-11  Score=84.11  Aligned_cols=73  Identities=14%  Similarity=0.311  Sum_probs=57.1

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      ..+.+|+++.|.|.+.|.|.|..|.|++||.++...    .....+.|.|..+  .|+|.|.|.|.|..|...++.+.|
T Consensus         8 ~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~----~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749           8 LSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP----PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             eEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC----CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence            467899999999999999999349999999988531    1123457888776  478999999999999776555544

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.24  E-value=4.5e-11  Score=83.29  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=59.7

Q ss_pred             ceEEEEEEEeeeC--CCceeEEEeCCCCCCCCCCceeEee-C--CCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         240 EQVLVSCTVDANP--QAQYFTWAFNNSDTAPRPLTSYSIQ-D--GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       240 ~~~~l~C~~~~~p--~~~~~~W~~~~~~~~~~~~~~~~~~-~--~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      +.+.|.|.+.+.|  ++. +.|+++|..........++.. .  ...+.|.|.+++.+|+|.|+|.|.|..+..+.+..|
T Consensus         1 ~~~~l~C~v~~d~~l~~~-~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L   79 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIV-FTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL   79 (85)
T ss_pred             CcEEEEEEeccCCCCCcE-EEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence            4689999997744  665 999999976542211112211 1  122359999999999999999999999999999999


Q ss_pred             EEEcCc
Q psy3823         315 HVVKAG  320 (365)
Q Consensus       315 ~v~~~~  320 (365)
                      .|..++
T Consensus        80 ~V~~pP   85 (85)
T cd05853          80 IVRGPP   85 (85)
T ss_pred             EEecCC
Confidence            998653

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.24  E-value=5.2e-11  Score=85.99  Aligned_cols=80  Identities=25%  Similarity=0.500  Sum_probs=62.3

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCC-ceEEeeceEEEeee-----cCCCCeEEEEEEEcC-CCCCC
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASA-GRIITNQTLVLQSV-----TRHSGGLYACSAINS-QGEGG  202 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~-~~~~~~~~l~i~~~-----~~~d~G~Y~C~~~~~-~~~~~  202 (365)
                      ..+.+|+++.|.|.+.|.|.+. +.|++||..+...... .....++++.|.++     .+.|.|.|+|.+.|. .|...
T Consensus         9 ~~~~~g~~v~l~C~v~g~P~p~-i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~   87 (95)
T cd05722           9 IVAVRGGPVVLNCSAEGEPPPK-IEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV   87 (95)
T ss_pred             eEEcCCCCEEEeeecccCCCCE-EEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence            3567899999999999998777 9999999988653321 23334567777776     578999999999999 99876


Q ss_pred             cccEEEEE
Q psy3823         203 STPFDLNI  210 (365)
Q Consensus       203 s~~~~l~v  210 (365)
                      ++.+.|.|
T Consensus        88 s~~~~l~v   95 (95)
T cd05722          88 SRTARLTV   95 (95)
T ss_pred             EeeeEEeC
Confidence            67666653

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.24  E-value=4.1e-11  Score=82.66  Aligned_cols=73  Identities=19%  Similarity=0.273  Sum_probs=57.8

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +.|.|.+.+.|.+ .+.|+|++.. +................|.|.+++.+|.|.|+|.+.|..|..+..+.|.|
T Consensus         1 ~~L~C~v~g~P~p-~v~W~k~~~~-l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (76)
T cd05736           1 ASLRCHAEGIPLP-RLTWLKNGMD-ITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV   73 (76)
T ss_pred             CEeEeEeeecCCC-EEEEEECCEE-CCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence            4689998899999 9999999988 65433222111122237999999999999999999999999998888887

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.24  E-value=7e-11  Score=84.25  Aligned_cols=77  Identities=19%  Similarity=0.267  Sum_probs=57.3

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCC----CCCCC-CCceeEe-------eCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNS----DTAPR-PLTSYSI-------QDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~----~~~~~-~~~~~~~-------~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      |+.+.|.|.+.|.|.|. +.|++++.    ..... .......       ..+....|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v~g~P~P~-i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEeCCCCCe-EEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            67899999999999998 99999642    11111 1111111       112234699999999999999999999999


Q ss_pred             cceecEEEEE
Q psy3823         307 SQRTPCTFHV  316 (365)
Q Consensus       307 ~~~~~~~l~v  316 (365)
                      ....++.|.|
T Consensus        80 ~~~~sa~L~V   89 (90)
T cd04974          80 PSHHSAWLTV   89 (90)
T ss_pred             cccCCEEEEe
Confidence            9999999887

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.24  E-value=6e-11  Score=81.81  Aligned_cols=75  Identities=20%  Similarity=0.327  Sum_probs=58.4

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      +.|.|.+.|.|+|. +.|++++....... ..++...+..+.|.|.++..+|.|.|+|.|.|..|..+..+.|.|..
T Consensus         1 ~~L~C~v~g~P~p~-v~W~k~~~~l~~~~-~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   75 (76)
T cd05736           1 ASLRCHAEGIPLPR-LTWLKNGMDITPKL-SKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED   75 (76)
T ss_pred             CEeEeEeeecCCCE-EEEEECCEECCCCC-CccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence            36899999999998 99999887543322 22222223334699999999999999999999999999999998863

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.23  E-value=9.2e-11  Score=83.96  Aligned_cols=71  Identities=25%  Similarity=0.391  Sum_probs=53.9

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCC-CCCCeEEEEEEEeCCCCCc-ccEEE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTS-ELEYGTLLCWARNEQGNQR-TPCTF  102 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~~~~~~~~-~~~~l  102 (365)
                      |+.+.|.|.+.++|.+ .++|++++.. +..........++   .|.|.++. .+|+|.|+|.|.|..|... ..+.|
T Consensus        19 ~~~v~l~C~a~G~P~P-~i~W~k~~~~-i~~~~~~~~~~~g---~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRARANPFP-IYKWRKNNLD-IDLTNDRYSMVGG---NLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCccCCCC-EEEEEECCEE-ccCCCCeEEEECC---EEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            4589999999999999 9999999987 6432222222334   78998875 6899999999999998764 34444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.23  E-value=7.4e-11  Score=85.18  Aligned_cols=82  Identities=17%  Similarity=0.285  Sum_probs=59.6

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc--eeEecCCeEEEEEEccC-----CCCCCeEEEEEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT--SYSIQDGSTSVARYTPT-----SELEYGTLLCWAR   90 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a~   90 (365)
                      ++....+.+|+++.|.|.+.+.|.+ .+.|+|++.. +.....  .....++   .|.|.++     +..|.|.|+|.|.
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~-l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~   79 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVL-LNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQ   79 (95)
T ss_pred             CCCCeEEcCCCCEEEeeecccCCCC-EEEEEECCeE-CccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEE
Confidence            3445667899999999999999999 9999999987 654332  1222334   3455544     5889999999999


Q ss_pred             eC-CCCCc-ccEEEEE
Q psy3823          91 NE-QGNQR-TPCTFHV  104 (365)
Q Consensus        91 ~~-~~~~~-~~~~l~V  104 (365)
                      |. .|... ..+.|+|
T Consensus        80 N~~~G~~~s~~~~l~v   95 (95)
T cd05722          80 NDSLGSIVSRTARLTV   95 (95)
T ss_pred             CCccCcEEEeeeEEeC
Confidence            99 87653 5555543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.23  E-value=4.6e-11  Score=83.56  Aligned_cols=76  Identities=21%  Similarity=0.305  Sum_probs=56.5

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCC---CCCCce--eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTA---PRPLTS--YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~---~~~~~~--~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      |+.+.|.|.+.|.|.|. +.|++++....   ......  .+.. .....|.|.+++.+|+|.|.|.|.|..|..+..+.
T Consensus         1 G~~v~l~C~~~g~P~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   78 (81)
T cd05765           1 GETASFHCDVTGRPPPE-ITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP   78 (81)
T ss_pred             CCcEEEEeeccccCCCc-EEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence            68899999999999998 99999743111   000000  0111 12246999999999999999999999999998888


Q ss_pred             EEE
Q psy3823         314 FHV  316 (365)
Q Consensus       314 l~v  316 (365)
                      |.|
T Consensus        79 l~v   81 (81)
T cd05765          79 LSV   81 (81)
T ss_pred             EeC
Confidence            865

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.22  E-value=6.3e-11  Score=81.62  Aligned_cols=74  Identities=15%  Similarity=0.254  Sum_probs=55.6

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      ..+....+.+|++++|.|.+.+.|.+..+.|+||+.. +..       ..   ..|.|.++ .+|+|.|+|.|.+.  ..
T Consensus         5 ~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~-l~~-------~~---~~l~i~~~-~~dsG~Y~C~a~~~--~~   70 (78)
T cd05752           5 LDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKL-LET-------TT---NSYRIRAA-NNDSGEYRCQTQGS--SL   70 (78)
T ss_pred             eCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEE-eec-------cC---CeEEEeec-ccCCEEeEEECCCC--cC
Confidence            3455677889999999999878776437999999987 521       12   37889999 99999999999864  33


Q ss_pred             cccEEEEE
Q psy3823          97 RTPCTFHV  104 (365)
Q Consensus        97 ~~~~~l~V  104 (365)
                      ...++|+|
T Consensus        71 S~~v~l~V   78 (78)
T cd05752          71 SDPVHLEV   78 (78)
T ss_pred             CCCEEEeC
Confidence            35555543

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.22  E-value=1.2e-10  Score=83.35  Aligned_cols=83  Identities=10%  Similarity=0.057  Sum_probs=58.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC-------c-eeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL-------T-SYSIQDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-------~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      .....+.+|+++.|.|.+.+.|.+ .+.|++++...+..+.       + ...........|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~   82 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF   82 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence            356778999999999998889999 9999998764111111       1 111222345689999999999999999998


Q ss_pred             eCCCCCcccEEEE
Q psy3823          91 NEQGNQRTPCTFH  103 (365)
Q Consensus        91 ~~~~~~~~~~~l~  103 (365)
                      .. .......+|+
T Consensus        83 t~-~~~~~~~~~~   94 (95)
T cd05882          83 TM-PVRTAKATVT   94 (95)
T ss_pred             ee-ccccEEEEEE
Confidence            72 2333445444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.22  E-value=5.1e-11  Score=80.30  Aligned_cols=69  Identities=16%  Similarity=0.091  Sum_probs=51.9

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEE
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFH  103 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~  103 (365)
                      +.|.|.+.|.|.| .+.|+|++.. +............   +|.|.+++.+|+|.|+|.|.+..........++
T Consensus         1 ~~l~c~v~g~P~P-~v~W~kdg~~-l~~~~~~~~~~~~---~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPAP-EVIWLKDGLP-AAEKCSRYHVDGY---SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCCC-eEEEEECCEE-CCCCCcEEEeCCC---EEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            4689999999999 9999999988 6544322222222   799999999999999999999755544444333

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.22  E-value=1.4e-10  Score=83.42  Aligned_cols=75  Identities=23%  Similarity=0.341  Sum_probs=55.0

Q ss_pred             CceEEEEecC---CcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCC-CCCCeEEEEEEEeC
Q psy3823          18 QQRIYGALRN---EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTS-ELEYGTLLCWARNE   92 (365)
Q Consensus        18 ~~~~~~v~~G---~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~~~   92 (365)
                      ++....+.+|   +.++|.|.+.++|.+ .++|++++.. +...... ....++   .|.|.++. ..|+|.|+|.|.|.
T Consensus         7 ~P~~~~~~~~~~g~~v~l~C~a~g~P~p-~i~W~~~g~~-l~~~~~~~~~~~~g---~L~I~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05850           7 QPSSLLFPEGSPEEKVTLGCRARASPPA-TYRWKMNGTE-IKFAPESRYTLVAG---NLVINNPQKARDAGSYQCLAINR   81 (94)
T ss_pred             CCCCEEecCCCCCCeEEEEeEceeCCCC-EEEEEECCEE-CccCCCceEEEECC---eEEEccCCccCcCEEEEEEEEcC
Confidence            3444444444   689999999999999 9999999988 6533221 222333   68887754 58999999999999


Q ss_pred             CCCCc
Q psy3823          93 QGNQR   97 (365)
Q Consensus        93 ~~~~~   97 (365)
                      .|...
T Consensus        82 ~G~~~   86 (94)
T cd05850          82 CGTVV   86 (94)
T ss_pred             cCcEE
Confidence            98764

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.21  E-value=7e-11  Score=81.29  Aligned_cols=69  Identities=16%  Similarity=0.274  Sum_probs=53.8

Q ss_pred             EEEEEEeCC-CCCcceEEEEeCCCcCCCCCCcee---EecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823          30 VLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSY---SIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPC  100 (365)
Q Consensus        30 ~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~  100 (365)
                      +.|.|.+.+ .|.+ .+.|+|++.. +.......   .........|.|.+++.+|.|.|+|.|.|..|....++
T Consensus         1 ~~l~C~~~g~~P~p-~~~W~k~g~~-l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750           1 LVLKCEATSEYPSL-RFKWFKDGKE-LNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             CEEEEEccCCCCCc-eEEEEcCCee-ccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            479999878 8999 9999999987 65443321   22334456899999999999999999999998866444

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.21  E-value=5.8e-11  Score=82.31  Aligned_cols=71  Identities=20%  Similarity=0.244  Sum_probs=55.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      ++....+.+|+.+.|.|.+.|+|.|..++|++++.. +...      .....+.|.|..+.  |.|.|.|.|.|..|...
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~-l~~~------~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~   74 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSP-LGDP------PAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTT   74 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEE-CCCC------CCCCCCEEEEcccc--CCeEEEEEEEeccCcEE
Confidence            455678899999999999999998834999999988 6531      11222378888774  78999999999998654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.21  E-value=8.7e-11  Score=80.82  Aligned_cols=71  Identities=13%  Similarity=0.274  Sum_probs=54.3

Q ss_pred             EEEEEEEee-eCCCceeEEEeCCCCCCCCCCce--eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         242 VLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTS--YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       242 ~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      +.|.|.+.| .|.|. +.|+++|..........  .+......+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~-~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLR-FKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCce-EEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 89998 99999887543322211  1333445678999999999999999999999999876554

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.20  E-value=1.7e-10  Score=80.09  Aligned_cols=74  Identities=14%  Similarity=0.251  Sum_probs=57.5

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +.+|+.+.|.|.+.+. .+. +.|+++|..... ..+..+  .+  ..|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         6 ~~~G~~v~l~C~~~~~-~~~-v~W~k~g~~l~~-~~~~~~--~~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~   78 (79)
T cd04973           6 AHPGDLLQLRCRLRDD-VQS-INWTKDGVQLGE-NNRTRI--TG--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN   78 (79)
T ss_pred             ecCCCCEEEEEEecCC-Cce-EEEeeCCcCCCC-CceEEE--eC--CEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence            7899999999999886 566 999999875432 223332  22  2599999999999999999999999987766654


Q ss_pred             E
Q psy3823         316 V  316 (365)
Q Consensus       316 v  316 (365)
                      |
T Consensus        79 V   79 (79)
T cd04973          79 V   79 (79)
T ss_pred             C
Confidence            3

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.20  E-value=6.1e-11  Score=82.95  Aligned_cols=77  Identities=22%  Similarity=0.291  Sum_probs=56.1

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCc---CCCCCCcee-EecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSG---TAPRPLTSY-SIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTF  102 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~---~l~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l  102 (365)
                      |+.+.|.|.+.+.|.+ .++|++++..   .+....... .........|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus         1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (81)
T cd05765           1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL   79 (81)
T ss_pred             CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence            7899999999899999 9999997432   011111100 0000112479999999999999999999999988888877


Q ss_pred             EE
Q psy3823         103 HV  104 (365)
Q Consensus       103 ~V  104 (365)
                      +|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            64

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.20  E-value=7.5e-11  Score=81.40  Aligned_cols=70  Identities=29%  Similarity=0.518  Sum_probs=53.9

Q ss_pred             EEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE--eeceEEEeeecC----CCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         138 IYFDCHIQANPPYKKLIWTHNGITISNNASAGRII--TNQTLVLQSVTR----HSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~--~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      +.|.|.+.|.|.|. ++|++|+..+......+...  .++.|.|.++..    +|+|.|+|.|.|..|...++.+.|
T Consensus         1 i~l~C~~~G~P~P~-v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733           1 IVIKCEAKGNPPPT-FSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             CEEEeeCcccCCCe-EEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            47999999999988 99999999885433223322  367899988754    789999999999999876655544

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.19  E-value=1.1e-10  Score=78.52  Aligned_cols=68  Identities=16%  Similarity=0.218  Sum_probs=52.1

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      |+.+.|.|.+.|.|.|. +.|++++..... .....   .+ ...|.|.++  .|+|.|+|.|.|..|..+.++.|
T Consensus         1 G~~v~L~C~a~G~P~P~-v~W~k~g~~l~~-~~~~~---~~-~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPY-VKWMKGGEELTK-EDEMP---VG-RNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCE-EEEEECCEECCC-cccee---cC-ccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999998 999998864322 11111   11 235888887  47999999999999998877665

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.19  E-value=2e-10  Score=80.60  Aligned_cols=76  Identities=17%  Similarity=0.295  Sum_probs=57.0

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce--e--EecCCeEEEEEEccCCCCCCeEEEEEEEeCCC--CCcccE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS--Y--SIQDGSTSVARYTPTSELEYGTLLCWARNEQG--NQRTPC  100 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~--~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~--~~~~~~  100 (365)
                      |++++|.|.+.+.|.+ .+.|+++++. .......  .  .......+.|.|.+++.+|+|.|+|.|.+...  ....++
T Consensus         1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv   78 (84)
T cd05861           1 GETITVNCIVQGNEVV-DFSWTYPGKD-IGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV   78 (84)
T ss_pred             CCcEEEEEEEECCCcc-EEEEEECCcc-CCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence            7999999998788888 9999998765 3322211  1  11223456899999999999999999998766  344777


Q ss_pred             EEEE
Q psy3823         101 TFHV  104 (365)
Q Consensus       101 ~l~V  104 (365)
                      .|+|
T Consensus        79 ~i~V   82 (84)
T cd05861          79 NITV   82 (84)
T ss_pred             EEEE
Confidence            7777

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.19  E-value=2.1e-10  Score=80.52  Aligned_cols=78  Identities=18%  Similarity=0.273  Sum_probs=57.8

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCc---eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc--cceecEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLT---SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG--SQRTPCT  313 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g--~~~~~~~  313 (365)
                      |+.+.|.|.+.+.|.+. +.|++++.........   .........+.|.|.+++.+|+|.|.|.|.|..+  ....++.
T Consensus         1 Ge~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVD-FSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccE-EEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            78999999999998887 9999877533221111   1112223357899999999999999999999877  5667777


Q ss_pred             EEEE
Q psy3823         314 FHVV  317 (365)
Q Consensus       314 l~v~  317 (365)
                      |.|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            7663

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.18  E-value=1.4e-10  Score=81.66  Aligned_cols=77  Identities=17%  Similarity=0.279  Sum_probs=58.0

Q ss_pred             CceEEEEEEEeee--CCCceeEEEeCCCCCCCCCCce--e--EeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         239 NEQVLVSCTVDAN--PQAQYFTWAFNNSDTAPRPLTS--Y--SIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       239 g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~~~~~~--~--~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      |+.+.|.|.+.+.  |++. +.|.+++..........  .  .......+.|.|.+++.+|+|.|+|.|.|..|..+.+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGVD-FQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccEE-EEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence            7889999999998  7777 99998775332211110  0  11123456899999999999999999999999988887


Q ss_pred             EEEE
Q psy3823         313 TFHV  316 (365)
Q Consensus       313 ~l~v  316 (365)
                      .|.|
T Consensus        80 ~v~v   83 (84)
T cd05742          80 KVNI   83 (84)
T ss_pred             EEEE
Confidence            7765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.18  E-value=2.4e-10  Score=80.73  Aligned_cols=82  Identities=13%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      .+.+.+|+.+.|.|.+.+.|.+ .+.|++++.. +...... ..........|.|.++..+|.|.|+|.+.+..|..+.+
T Consensus         3 ~~~~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~   80 (85)
T cd05729           3 LHAVPAGSTVRLKCPASGNPRP-TITWLKDGKP-FKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT   80 (85)
T ss_pred             eeEecCCCcEEEEEEcCCCCCC-eEEEEECCEE-CcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence            4567789999999998888999 9999999887 5533221 12223344579999999999999999999998887677


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      +.|.|
T Consensus        81 ~~l~v   85 (85)
T cd05729          81 YKVDV   85 (85)
T ss_pred             EEEeC
Confidence            76653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.18  E-value=1.3e-10  Score=81.83  Aligned_cols=76  Identities=18%  Similarity=0.295  Sum_probs=58.6

Q ss_pred             CCcEEEEEEeCCC--CCcceEEEEeCCCcCCCCCCce-----eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          27 NEQVLVSCTVDAN--PQAQYFTWAFNNSGTAPRPLTS-----YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        27 G~~~~l~C~~~~~--p~~~~v~W~~~~~~~l~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      |+.+.|.|.+.+.  |.+ .++|++++.. +......     ........+.|.|.+++.+|+|.|+|.|.|..+....+
T Consensus         1 Ge~~~L~C~~~g~~~~~~-~i~W~~~~~~-~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s   78 (84)
T cd05742           1 GETLVLNCTVLTELNEGV-DFQWTYPGKK-RGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES   78 (84)
T ss_pred             CCeEEEEEEEEeCCCccE-EEEEecCCcc-cCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence            7899999998888  777 9999998876 4322111     11122345689999999999999999999999888877


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      ..|.|
T Consensus        79 ~~v~v   83 (84)
T cd05742          79 TKVNI   83 (84)
T ss_pred             EEEEE
Confidence            77765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.17  E-value=1.3e-10  Score=83.31  Aligned_cols=78  Identities=21%  Similarity=0.328  Sum_probs=60.5

Q ss_pred             eecCceEEEEEEEee-----eCCCceeEEEeCCCCCCCCC-CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823         236 ALRNEQVLVSCTVDA-----NPQAQYFTWAFNNSDTAPRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR  309 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~-----~p~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~  309 (365)
                      +.+|+.+.|.|.+.+     .|.+. +.|++++....... ...++...+  ..|.|.++..+|+|.|.|.+.|..|..+
T Consensus        11 v~~G~~~~L~C~~~g~~~~~~p~~~-v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~~~N~~g~~~   87 (94)
T cd05756          11 VLEGEPVVIKCPLFYSYIAQSPGLN-LTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPAALEDSGLYTCVVRNSTYCMK   87 (94)
T ss_pred             EecCCCeEEECCCCCcccccCCCce-EEEEEcCCCCcccccccceeeecC--CeEEEccCCcccCeEEEEEEcCCCccEE
Confidence            778999999999998     67887 99999986433221 112222222  3599999999999999999999999998


Q ss_pred             ecEEEEE
Q psy3823         310 TPCTFHV  316 (365)
Q Consensus       310 ~~~~l~v  316 (365)
                      ..+.|.|
T Consensus        88 ~~~~L~v   94 (94)
T cd05756          88 VSISLTV   94 (94)
T ss_pred             EEEEEEC
Confidence            8887764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.17  E-value=3.9e-10  Score=80.32  Aligned_cols=80  Identities=14%  Similarity=0.270  Sum_probs=60.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC---ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL---TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      +..+.+.+|+.+.|.|...+ |.+ .+.|++++.. +....   ........   .|.|.+++.+|+|.|+|.|.+..+.
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~-~~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~~~~~~   76 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLA-SVVWLFQGGP-LQRKEEPEERLLVTED---GLLIRSVSPADAGVYTCQSVEHGFK   76 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCc-eEEEEECCcc-cccccCcCceEEEcCC---CEEEccCCHHHCEEEEEEEecCccc
Confidence            45677899999999999866 888 9999999987 54432   11111222   4889999999999999999876654


Q ss_pred             Cc-ccEEEEE
Q psy3823          96 QR-TPCTFHV  104 (365)
Q Consensus        96 ~~-~~~~l~V  104 (365)
                      .. .+++|.|
T Consensus        77 ~~~~~~~l~V   86 (89)
T cd04979          77 QTLATYSLNV   86 (89)
T ss_pred             eeEeEEEEEE
Confidence            43 7777777

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.17  E-value=7e-10  Score=79.40  Aligned_cols=85  Identities=19%  Similarity=0.249  Sum_probs=66.5

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC--ceeE----ecCCeEEEEEEccCCCCC-CeEEEEEE
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL--TSYS----IQDGSTSVARYTPTSELE-YGTLLCWA   89 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~--~~~~----~~~~~~~~l~i~~~~~~d-~G~Y~C~a   89 (365)
                      ...+...+.+|+.+.|.|.+.+.|.|..+.|..++.. +....  ....    ...+..+.|.|.++...| .|.|.|.|
T Consensus         6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~-i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a   84 (98)
T cd05898           6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENV-LESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA   84 (98)
T ss_pred             ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEcccc-ccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence            3455666789999999999888999878899988876 65432  2221    244678899999998766 79999999


Q ss_pred             EeCCCCCcccEEE
Q psy3823          90 RNEQGNQRTPCTF  102 (365)
Q Consensus        90 ~~~~~~~~~~~~l  102 (365)
                      .|..|.+...++|
T Consensus        85 ~N~~G~d~~~i~L   97 (98)
T cd05898          85 WNSFGSGTAIIQL   97 (98)
T ss_pred             EeCCccceEEEEe
Confidence            9999998877765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.16  E-value=4.3e-10  Score=80.83  Aligned_cols=85  Identities=11%  Similarity=0.087  Sum_probs=58.6

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCC--------cCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS--------GTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~--------~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      +.....+.+|++++|.|...+.|.+ .+.|++.+.        ..+..+............+|.|.+++.+|+|.|+|.+
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~   81 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL   81 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence            3456789999999999998888999 999986432        1011222111122234568999999999999999999


Q ss_pred             EeCCCCCcccEEEEE
Q psy3823          90 RNEQGNQRTPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V  104 (365)
                      .+... ......|+|
T Consensus        82 ~t~~~-~~~~~~l~v   95 (95)
T cd07701          82 FTMPV-KTSKAYLTV   95 (95)
T ss_pred             EeecC-ccEEEEEEC
Confidence            87432 345555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.16  E-value=2.8e-10  Score=79.64  Aligned_cols=69  Identities=14%  Similarity=0.197  Sum_probs=54.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      +....+.+|+++.|.|.+.+ |.+ .+.|++++.. +..........++   .|.|.+++.+|+|.|+|.+....
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~-~i~W~~ng~~-i~~~~~r~~~~~~---~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLA-RVVWKFDGKV-LTPESAKYLLYRD---GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCC-eEEEEECCEE-CCCCCceEEEECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence            55677899999999999754 667 9999999998 6554222223334   69999999999999999998653

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.16  E-value=1.4e-10  Score=80.05  Aligned_cols=66  Identities=18%  Similarity=0.323  Sum_probs=47.7

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCC----CCCeEEEEEEEeCCCCCc
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSE----LEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~~~~~~~~   97 (365)
                      ++|.|.+.++|.| .|+|+|++.. +................|.|.++..    +|+|.|+|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P-~v~W~k~g~~-l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPP-TFSWTRNGTH-FDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCC-eEEEEECCeE-CCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            4799999999999 9999999987 6433221111111123788887753    689999999999998754

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.15  E-value=1.6e-10  Score=79.67  Aligned_cols=70  Identities=26%  Similarity=0.516  Sum_probs=52.6

Q ss_pred             EEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE--eeceEEEeeecC----CCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         138 IYFDCHIQANPPYKKLIWTHNGITISNNASAGRII--TNQTLVLQSVTR----HSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~--~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      +.|.|.+.|.|.|. ++|++++.++..........  .+++|.|..+..    .|.|.|+|.|.|..|...+..+.|
T Consensus         1 ~~l~C~a~G~P~P~-i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874           1 IVIQCEAKGKPPPS-FSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeeCcccCCCe-EEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            47999999999988 99999999875333322222  367888877764    378999999999999776555443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.15  E-value=2.9e-10  Score=78.98  Aligned_cols=70  Identities=16%  Similarity=0.324  Sum_probs=50.3

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCC-------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc-eecEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAP-------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ-RTPCT  313 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~  313 (365)
                      ++|.|.+.|.|.|. +.|++++.....       ...+.....+   ..|.|.+++.+|+|.|.|.|.|..|.. +..+.
T Consensus         1 v~l~C~~~G~P~P~-v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~   76 (79)
T cd05734           1 VTLNCSAEGYPPPT-IVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMV   76 (79)
T ss_pred             CEeEeeCeEeCCCE-EEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence            47999999999998 999997542211       1111222222   359999999999999999999999986 45555


Q ss_pred             EE
Q psy3823         314 FH  315 (365)
Q Consensus       314 l~  315 (365)
                      |+
T Consensus        77 l~   78 (79)
T cd05734          77 LT   78 (79)
T ss_pred             Ee
Confidence            44

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.14  E-value=1.9e-10  Score=79.92  Aligned_cols=72  Identities=21%  Similarity=0.508  Sum_probs=54.2

Q ss_pred             EEEEEEEEecCCCCeeEEEeCCeEEeeC------CCCce-EEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         138 IYFDCHIQANPPYKKLIWTHNGITISNN------ASAGR-IITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~------~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      |+|.|.+.|+|.|. +.|++++......      ...+. ...+++|.|.++..+|+|.|.|.|.|..|...++.+.|+|
T Consensus         1 v~l~C~~~G~P~P~-v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPT-IVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCE-EEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            57999999999998 9999964322110      11122 2346789999999999999999999999987767776654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.14  E-value=2.2e-10  Score=78.91  Aligned_cols=70  Identities=27%  Similarity=0.374  Sum_probs=52.5

Q ss_pred             EEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceE--EeeceEEEeeec----CCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         138 IYFDCHIQANPPYKKLIWTHNGITISNNASAGRI--ITNQTLVLQSVT----RHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~--~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      +.|.|.+.|+|.|. ++|++++..+......+..  ..+++|.|..+.    .+|+|.|+|.|.|..|...+..+.|
T Consensus         1 ~~l~C~~~G~P~P~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875           1 IIIECEAKGNPVPT-FQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             CEEEEeccccCCCE-EEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            47899999999998 9999999877432222222  246789998764    3579999999999999776555443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.14  E-value=2.5e-10  Score=76.97  Aligned_cols=70  Identities=16%  Similarity=0.071  Sum_probs=52.7

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      +.|.|.+.|.|+|. +.|+++|.+......  .+..++.  .|.|.+++.+|+|.|+|.|.|..........+.+
T Consensus         1 ~~l~c~v~g~P~P~-v~W~kdg~~l~~~~~--~~~~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPE-VIWLKDGLPAAEKCS--RYHVDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCe-EEEEECCEECCCCCc--EEEeCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            36899999999998 999999865433222  2223332  5999999999999999999998776665555543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.14  E-value=3.4e-10  Score=79.18  Aligned_cols=74  Identities=26%  Similarity=0.418  Sum_probs=58.9

Q ss_pred             ceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      .+.+|++++|.|.+.+..+..++.|+++|..+...      ..+..|.|.+++..|+|.|+|.+.+..+...|+.+.|+|
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            57899999999998654444459999999876421      124689999999999999999999999877777776654

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.13  E-value=2.3e-10  Score=81.21  Aligned_cols=74  Identities=12%  Similarity=0.246  Sum_probs=56.9

Q ss_pred             ceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCC-CCCCceeE-ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          19 QRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTA-PRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l-~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      .....+.+|+.+.|.|. ..+.|.+ .|.|++++.... ........ ..+|   .|.|.+++.+|.|.|+|.|.+....
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p-~~~W~k~~~~~~~~~d~r~~~~~~~G---~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDL-SYRWLLNEFPNFIPEDGRRFVSQTNG---NLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCC-EEEEEECCcccccccCCCeEEeCCCC---cEEEeecCHhhCceeEEEEEecccC
Confidence            45577899999999998 8889999 999999987511 22222122 2345   8999999999999999999987654


Q ss_pred             C
Q psy3823          96 Q   96 (365)
Q Consensus        96 ~   96 (365)
                      .
T Consensus        86 ~   86 (96)
T cd05727          86 K   86 (96)
T ss_pred             C
Confidence            4

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.12  E-value=2.5e-10  Score=78.60  Aligned_cols=63  Identities=21%  Similarity=0.342  Sum_probs=46.1

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCc--eeEe-cCCeEEEEEEccCCC----CCCeEEEEEEEeCCCCCc
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLT--SYSI-QDGSTSVARYTPTSE----LEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~--~~~~-~~~~~~~l~i~~~~~----~d~G~Y~C~a~~~~~~~~   97 (365)
                      +.|.|.+.|+|.| .++|+|++.. +.....  .... .++   +|.|..+..    .|.|.|+|.|.|..|...
T Consensus         1 ~~l~C~a~G~P~P-~i~W~k~g~~-l~~~~~~~~~~~~~~g---~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05874           1 IVIQCEAKGKPPP-SFSWTRNGTH-FDIDKDPKVTMKPNTG---TLVINIMNGEKAEAYEGVYQCTARNERGAAV   70 (77)
T ss_pred             CEEEeeCcccCCC-eEEEEECCeE-CCCcCCCCEEEeCCCc---eEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence            4799999999999 9999999987 532222  1222 233   677776653    378999999999988654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.12  E-value=4.8e-10  Score=80.18  Aligned_cols=70  Identities=23%  Similarity=0.458  Sum_probs=55.8

Q ss_pred             cCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecC-CCCeEEEEEEEcCCCCCCcc
Q psy3823         134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTR-HSGGLYACSAINSQGEGGST  204 (365)
Q Consensus       134 ~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~s~  204 (365)
                      .|+.+.|.|.+.|.|.+. ++|++++..+...........++.|.|.++.. .|+|.|+|.|.|..|...++
T Consensus        18 ~~~~~~l~C~~~g~p~p~-i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~   88 (91)
T cd04967          18 DEGKVSLNCRARGSPPPT-YRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR   88 (91)
T ss_pred             CCCEEEEEEeeeEcCCCE-EEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence            456899999999988887 99999999885433334455567899988875 89999999999999965543

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.12  E-value=2.8e-10  Score=78.42  Aligned_cols=64  Identities=20%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCC--CceeEecCCeEEEEEEccCC----CCCCeEEEEEEEeCCCCCc
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRP--LTSYSIQDGSTSVARYTPTS----ELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~a~~~~~~~~   97 (365)
                      +.|.|.+.|+|.| .++|+|++.. +...  .......  ..++|.|.++.    .+|+|.|+|.|.|..|...
T Consensus         1 ~~l~C~~~G~P~P-~v~W~k~g~~-~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05875           1 IIIECEAKGNPVP-TFQWTRNGKF-FNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL   70 (77)
T ss_pred             CEEEEeccccCCC-EEEEEECCEE-ccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence            4799999999999 9999999986 5322  2222211  12378887764    2469999999999998654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.12  E-value=6.2e-10  Score=78.55  Aligned_cols=80  Identities=15%  Similarity=0.189  Sum_probs=60.6

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +..|+.+.|.|.+.+.|.+. +.|++++....................|.|.+++.+|.|.|.|.+.|..|..+.++.|.
T Consensus         6 ~~~G~~~~l~C~~~~~p~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729           6 VPAGSTVRLKCPASGNPRPT-ITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             ecCCCcEEEEEEcCCCCCCe-EEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            66899999999999999998 99999876433211111111223345699999999999999999999999988777765


Q ss_pred             E
Q psy3823         316 V  316 (365)
Q Consensus       316 v  316 (365)
                      |
T Consensus        85 v   85 (85)
T cd05729          85 V   85 (85)
T ss_pred             C
Confidence            3

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.08  E-value=3.1e-09  Score=75.51  Aligned_cols=84  Identities=17%  Similarity=0.091  Sum_probs=66.6

Q ss_pred             eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCce-eE---eeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YS---IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR  309 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~-~~---~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~  309 (365)
                      ..+..|+.+.|.|.+.++|+|..+.|.+++.......... ..   ......+.|.+..++.+|+|.|+|.|.|..++.+
T Consensus        13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s   92 (101)
T cd05860          13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASAS   92 (101)
T ss_pred             EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEE
Confidence            3489999999999999999997799999876433222211 11   1123568999999999999999999999999999


Q ss_pred             ecEEEEEE
Q psy3823         310 TPCTFHVV  317 (365)
Q Consensus       310 ~~~~l~v~  317 (365)
                      .++.|+|+
T Consensus        93 ~tF~l~v~  100 (101)
T cd05860          93 VTFNVYVN  100 (101)
T ss_pred             EEEEEEEe
Confidence            98888875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.08  E-value=9.3e-10  Score=75.80  Aligned_cols=71  Identities=14%  Similarity=0.301  Sum_probs=52.4

Q ss_pred             EEEEEEEee-eCCCceeEEEeCCCCCCCCC-Cc--eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         242 VLVSCTVDA-NPQAQYFTWAFNNSDTAPRP-LT--SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       242 ~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~-~~--~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      +.|.|.+.+ .|.+. +.|+++|....... ..  .........+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~p~~~-~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLR-FKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCc-eEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            468999875 57777 99999887543221 11  22233345577999999999999999999999998877654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.08  E-value=6.8e-10  Score=78.65  Aligned_cols=80  Identities=13%  Similarity=0.149  Sum_probs=61.9

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCe-EEEEEE
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG-TLLCWA   89 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a   89 (365)
                      |.+.........+.+|+.+.|.|. ..+.|.+ .|.|++++...+....+.....++   .|.|.+++..|.| .|.|.|
T Consensus         3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a   78 (95)
T cd05845           3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHA   78 (95)
T ss_pred             CcCCccccceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEE
Confidence            444455567788999999999998 7899999 999998876534443333333445   8999999999999 899999


Q ss_pred             EeCCCC
Q psy3823          90 RNEQGN   95 (365)
Q Consensus        90 ~~~~~~   95 (365)
                      .+....
T Consensus        79 ~~~~~~   84 (95)
T cd05845          79 HFPGLR   84 (95)
T ss_pred             Eccccc
Confidence            987543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.07  E-value=1.1e-09  Score=75.42  Aligned_cols=69  Identities=16%  Similarity=0.253  Sum_probs=51.4

Q ss_pred             EEEEEEeC-CCCCcceEEEEeCCCcCCCCCCc----eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823          30 VLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLT----SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPC  100 (365)
Q Consensus        30 ~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~  100 (365)
                      +.|.|.+. +.|.+ .++|++++.. +.....    .........+.|.|.+++.+|+|.|+|.|.|..|....++
T Consensus         1 ~~L~C~a~~~~p~~-~~~W~~~g~~-i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSL-RFKWFKNGKE-IGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCCC-ceEEEECCcc-cccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            47999954 46777 9999999987 653221    1222334556899999999999999999999998766544

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.06  E-value=6.8e-10  Score=79.06  Aligned_cols=79  Identities=18%  Similarity=0.476  Sum_probs=60.8

Q ss_pred             ceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCC--CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNA--SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      .+.+|+++.|.|.+.+ |.+. +.|++++..+....  ..+.......|.|.++..+|+|.|.|.+.+..+.....++.|
T Consensus         7 ~v~~g~~v~L~C~~~~-p~~~-i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l   84 (89)
T cd04979           7 TVVEGNSVFLECSPKS-NLAS-VVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSL   84 (89)
T ss_pred             EEECCCcEEEEEeCCC-CCce-EEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEE
Confidence            5678999999999876 6665 99999988775432  122333456799999999999999999998877665566777


Q ss_pred             EEe
Q psy3823         209 NIN  211 (365)
Q Consensus       209 ~v~  211 (365)
                      .|.
T Consensus        85 ~V~   87 (89)
T cd04979          85 NVL   87 (89)
T ss_pred             EEe
Confidence            765

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.04  E-value=9.3e-10  Score=76.94  Aligned_cols=74  Identities=14%  Similarity=0.125  Sum_probs=55.9

Q ss_pred             EEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-c
Q psy3823          21 IYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-T   98 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~   98 (365)
                      ...+.+|+.++|.|... +.+.. .+.|+|++.. +...        .....|.|.+++.+|+|.|+|.+.+..+... .
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~-~~~w~k~g~~-~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~   77 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVY-KVTYYRDGKA-KKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSE   77 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcce-EEEEEECCeE-cccc--------CCCceEEECccCHHHCEEEEEEEEeCCceecCC
Confidence            34588999999999964 34556 8999999876 5321        1123799999999999999999999887544 5


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      .+.|+|
T Consensus        78 ~~~i~~   83 (83)
T cd05753          78 PVSITV   83 (83)
T ss_pred             CEEEEC
Confidence            555553

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.03  E-value=1.7e-09  Score=76.32  Aligned_cols=77  Identities=16%  Similarity=0.244  Sum_probs=59.4

Q ss_pred             CceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .++...+.+|++++|.|.+. +.|.+ .+.|++++.. +....   ...+   ..|.|.+++.+|+|.|+|.|.|..|..
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~-~~~~~---~~~~---~~L~I~~v~~~DsG~Y~C~a~n~~g~~   78 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAY-TLVWTRVGGG-LPSRA---MDFN---GILTIRNVQLSDAGTYVCTGSNMLDTD   78 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCc-EEEEEECCCc-CCCcc---cccC---CEEEECCCCHHHCEEEEEEEeccCCeE
Confidence            35567789999999999964 46777 9999999876 53321   1122   379999999999999999999988877


Q ss_pred             cccEEE
Q psy3823          97 RTPCTF  102 (365)
Q Consensus        97 ~~~~~l  102 (365)
                      ...+.|
T Consensus        79 ~~~~~l   84 (85)
T cd05754          79 EATATL   84 (85)
T ss_pred             eEEEEE
Confidence            655544

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.03  E-value=1.3e-09  Score=77.58  Aligned_cols=77  Identities=10%  Similarity=0.034  Sum_probs=58.0

Q ss_pred             EEEEecCCcEEEEEEeC-C----CCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          21 IYGALRNEQVLVSCTVD-A----NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~-~----~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ...+.+|+.+.|.|... .    +|.+ .+.|+|++.. +........ .+   ..|.|.+++.+|+|.|+|.+.+..+.
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p-~i~Wyk~~~~-i~~~~~~~~-~~---~~L~I~~v~~~DsG~YtC~~~n~~~~   77 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLP-PVQWYKDCKL-LEGDRKRFV-KG---SKLLIQNVTEEDAGNYTCKLTFTHNG   77 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCC-cEEEeECCEE-CCCCccEEe-cC---CEEEEeeCChhhCEEEEEEEEecCCC
Confidence            34578899999999832 2    3577 9999999988 765443222 33   38999999999999999999998877


Q ss_pred             CcccEEEE
Q psy3823          96 QRTPCTFH  103 (365)
Q Consensus        96 ~~~~~~l~  103 (365)
                      ....++.+
T Consensus        78 ~~~~~t~t   85 (92)
T cd05757          78 KQYNVTRT   85 (92)
T ss_pred             EEEEEEEE
Confidence            66444443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.99  E-value=4.5e-09  Score=75.12  Aligned_cols=68  Identities=22%  Similarity=0.453  Sum_probs=49.9

Q ss_pred             cCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCC-cccCeEEEEEEEcCCccce
Q psy3823         238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTS-ELEYGTLLCWARNEQGSQR  309 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~-~~d~G~Y~C~a~n~~g~~~  309 (365)
                      .|..+.|.|.+.|.|.|. +.|++++..............++   .|.|.++. .+|+|.|+|.|.|..|...
T Consensus        18 ~~~~~~l~C~~~g~p~p~-i~W~k~~~~l~~~~~~~~~~~~~---~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          18 DEGKVSLNCRARGSPPPT-YRWLMNGTEIDDEPDSRYSLVGG---NLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCCEEEEEEeeeEcCCCE-EEEEECCEECCCCCCCCEEEECC---EEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            456799999999999998 99999887542221111112222   47788776 4899999999999999764

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.99  E-value=4.5e-09  Score=74.02  Aligned_cols=79  Identities=15%  Similarity=0.236  Sum_probs=57.6

Q ss_pred             CceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCC--Cc---eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         239 NEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRP--LT---SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~--~~---~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      |+.+.|.|.+.+.+.+. .+.|..++.......  ..   .........+.|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            78899999998766443 489988775321111  10   0011123467899999999999999999999999888888


Q ss_pred             EEEEE
Q psy3823         313 TFHVV  317 (365)
Q Consensus       313 ~l~v~  317 (365)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            88775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.98  E-value=3.7e-09  Score=69.52  Aligned_cols=63  Identities=24%  Similarity=0.412  Sum_probs=49.3

Q ss_pred             cCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        26 ~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      +|+.++|.|.+.+.|.+ .+.|++++.. +. ......   .....|.|.+++.+|.|.|+|.+.+..|
T Consensus         1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~-~~-~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVP-NITWLKDGKP-LP-ESNRLS---ASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCC-eEEEEECCEE-CC-CCCEEe---cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            58999999997778888 9999999887 65 221111   2223899999999999999999987653

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.98  E-value=2.7e-09  Score=73.00  Aligned_cols=65  Identities=14%  Similarity=0.228  Sum_probs=50.9

Q ss_pred             cEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecC---CeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          29 QVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQD---GSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        29 ~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .++|.|. .+++|.+ .|+||+++.. +...... ...+   ...++|.|.....+|++.|+|+|.|..+..
T Consensus         1 ~~~L~C~s~~skP~a-~i~W~k~~~~-l~~~~~~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPAA-TLRWYRDRKE-LKGVISQ-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCCC-eEEEEECCEE-CCCCccc-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            3789999 8899999 9999999998 7543221 1111   234579999999999999999999988764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.97  E-value=1.9e-09  Score=75.37  Aligned_cols=66  Identities=12%  Similarity=0.421  Sum_probs=53.7

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQ  198 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  198 (365)
                      ..+..|+++.|.|.+.+ +.+. +.|++||.++..... +....++.|.|.+++..|+|.|+|.+.+..
T Consensus         6 ~~v~~G~~v~L~C~~~~-~~~~-i~W~~ng~~i~~~~~-r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           6 RTFKLGNNAELKCSPKS-NLAR-VVWKFDGKVLTPESA-KYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             EEEECCCCEEEEEECCC-CCCe-EEEEECCEECCCCCc-eEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            46789999999999754 4554 999999999875432 345567789999999999999999998764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.97  E-value=3.5e-09  Score=73.66  Aligned_cols=72  Identities=28%  Similarity=0.617  Sum_probs=56.1

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      ..+.+|+.++|.|.+.+.|... +.|++++..+....        ..+.+..+..+|+|.|+|.+.+..+...+..+.|+
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~~~~--------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~   79 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQ-VQWYKNGSPINSSQ--------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT   79 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSE-EEEEETTEEEEEES--------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEccccee-eeeeeeeeeeeeee--------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence            3578999999999999877755 99999988876322        12777889999999999999987665554555555


Q ss_pred             E
Q psy3823         210 I  210 (365)
Q Consensus       210 v  210 (365)
                      |
T Consensus        80 V   80 (80)
T PF13895_consen   80 V   80 (80)
T ss_dssp             E
T ss_pred             C
Confidence            4

...

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.96  E-value=4.4e-09  Score=74.12  Aligned_cols=71  Identities=13%  Similarity=0.203  Sum_probs=55.9

Q ss_pred             eecCceEEEEEEEee-eCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         236 ALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      +..|+.++|.|.+.+ .|.+. +.|++++.....    ....   ....|.|.+++.+|+|.|.|.|.|..|....++.|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~-i~W~~~~~~~~~----~~~~---~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          13 VRPGADVSFICRAKSKSPAYT-LVWTRVGGGLPS----RAMD---FNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             EcCCCCEEEEEEcCCCCCCcE-EEEEECCCcCCC----cccc---cCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            789999999999975 67776 999998764211    1111   12359999999999999999999999998887665

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.96  E-value=8.9e-09  Score=73.98  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=55.8

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCC-------CCCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSD-------TAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~-------~~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      .+.+|+++.|.|.+.+.|.+. +.|++.+..       ......+... ........|.|.+++.+|+|.|+|.+.+..+
T Consensus         8 ~v~eG~~v~L~C~~~~~p~~~-v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~   86 (95)
T cd07701           8 TVVEGGTANLTCRVDQNDNTS-LQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPV   86 (95)
T ss_pred             EEecCCcEEEEEEEecCCceE-EEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecC
Confidence            388999999999999999998 999853211       1111223322 2223456799999999999999999998544


Q ss_pred             cceecEEEEE
Q psy3823         307 SQRTPCTFHV  316 (365)
Q Consensus       307 ~~~~~~~l~v  316 (365)
                      . +....|.|
T Consensus        87 ~-~~~~~l~v   95 (95)
T cd07701          87 K-TSKAYLTV   95 (95)
T ss_pred             c-cEEEEEEC
Confidence            3 45555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.96  E-value=8.5e-09  Score=74.36  Aligned_cols=83  Identities=16%  Similarity=0.119  Sum_probs=55.7

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCC-------CCCceeE-ecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAP-------RPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~-------~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      +...+.+|++++|.|...+.+.+ .+.|++.+...+.       ...+... ........|.|.+++.+|+|.|+|.+..
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            45678999999999998777888 9999864332010       1111111 1223345799999999999999999987


Q ss_pred             CCCCCcccEEEEE
Q psy3823          92 EQGNQRTPCTFHV  104 (365)
Q Consensus        92 ~~~~~~~~~~l~V  104 (365)
                      ... ......|+|
T Consensus        84 ~~~-~~~~~~~~v   95 (95)
T cd05717          84 MPV-QTAKATVTV   95 (95)
T ss_pred             CCC-ceEEEEEEC
Confidence            543 345555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.95  E-value=6.2e-09  Score=74.19  Aligned_cols=81  Identities=16%  Similarity=0.300  Sum_probs=58.0

Q ss_pred             eEEEEecCCcEEEEEEe-C----------CCCCcceEEEEeCCCcCCCCCCc-----eeEecCCeEEEEEEccCCCCCCe
Q psy3823          20 RIYGALRNEQVLVSCTV-D----------ANPQAQYFTWAFNNSGTAPRPLT-----SYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~-~----------~~p~~~~v~W~~~~~~~l~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      ..+.+.+|+.+.|.|.. .          ..+.. .++|+|++.. +..+..     .+...  ....|.|.++..+|+|
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~-~v~WyK~~~~-~~~~~~~~~~~~Ri~~--~~~~Lwf~Pa~~eDSG   83 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGL-SLMWYKSSGD-GEEPIEIIFDGVRMSK--EEDSIWFRPAELQDSG   83 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCc-eEEEEECCCC-CCCCCcccccceeEEE--eCCEEEEEeCChhhCe
Confidence            45788999999999984 2          11233 7999999765 443331     12221  2237999999999999


Q ss_pred             EEEEEEEeCCCCCcccEEEEE
Q psy3823          84 TLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      .|+|.++|.....+..+.|+|
T Consensus        84 ~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          84 LYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEEEEECCCCcceEEEEEEEC
Confidence            999999998877766666654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.94  E-value=6e-09  Score=74.13  Aligned_cols=79  Identities=18%  Similarity=0.297  Sum_probs=55.0

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CCC----CCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe-CC
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-APR----PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN-EQ   93 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~-~~   93 (365)
                      ..+.+.+|+++.|.|.. +.|.+ .+.||+.+... ...    ... ....+   ..|.|.+++.+|+|.|+|.+.+ ..
T Consensus         4 ~~~~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r-~~~~~---~~L~I~~~~~~DsG~Y~C~a~~~~~   77 (91)
T cd05871           4 KVVYGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEER-LIHTE---RGLLLRSLQRSDAGVYTCTAVEHSF   77 (91)
T ss_pred             eEEEEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCcccccccccc-EEEec---CeEEEeeCChhHCEEEEEEEEccCC
Confidence            45667899999999996 47888 99999854320 111    111 11122   3699999999999999999985 44


Q ss_pred             CCCcccEEEEE
Q psy3823          94 GNQRTPCTFHV  104 (365)
Q Consensus        94 ~~~~~~~~l~V  104 (365)
                      +.....++|+|
T Consensus        78 ~~~~~~~~l~v   88 (91)
T cd05871          78 SQTLAKYTLHV   88 (91)
T ss_pred             eEEEEEEEEEE
Confidence            43447777777

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.93  E-value=4.4e-09  Score=69.72  Aligned_cols=61  Identities=25%  Similarity=0.378  Sum_probs=45.8

Q ss_pred             CCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCceeEe-cCC-eEEEEEEccCCCCCCeEEEEEE
Q psy3823          27 NEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTSYSI-QDG-STSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        27 G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~~~-~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      |+.++|.|.+ ...+.. .+.|++++.. +......... ... ...+|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~-~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPT-TVTWSKNGQS-LPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTS-EEEEEETTTT-TSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCc-EEEEEECCcc-ccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999997 666666 9999999987 5444332222 222 2224999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.92  E-value=6.2e-09  Score=68.44  Aligned_cols=63  Identities=29%  Similarity=0.559  Sum_probs=50.2

Q ss_pred             cCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       134 ~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      +|++++|.|.+.+.+.+. +.|++++..+.  ...........|.|.+++..|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPN-ITWLKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCe-EEEEECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            578999999987777766 99999988776  2222333466899999999999999999988654

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.92  E-value=2.1e-09  Score=76.34  Aligned_cols=71  Identities=17%  Similarity=0.255  Sum_probs=54.6

Q ss_pred             cceecCCcEEEEEEEE-ecCCCCeeEEEeCCeEEee-CCCCceEEe-eceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         130 SVLNEGVDIYFDCHIQ-ANPPYKKLIWTHNGITISN-NASAGRIIT-NQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~~~~l~~-~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      ..+.+|+.+.|.|... |.|.+. +.|++++.++.. ....+.... ++.|.|.+++..|+|.|+|.|.|.....
T Consensus        13 ~~v~eG~~~~L~C~pP~g~P~p~-~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          13 VKVKEGWGVVLFCDPPPHYPDLS-YRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             eeeeeCCcEEEeeCCCCCCCCCE-EEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            4578999999999877 567666 999999876422 122233333 7899999999999999999999987543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.92  E-value=1e-08  Score=73.49  Aligned_cols=78  Identities=12%  Similarity=0.125  Sum_probs=54.6

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------CCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------RPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      +..|+++.|.|.+.+.|.+. +.|++++.....       ...+..+ ........|.|.+++.+|+|.|+|.+... -.
T Consensus         9 v~~G~tv~L~C~v~g~~~~~-v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~-~~   86 (95)
T cd05882           9 VAVGGTVTLKCGVKEHDNSS-LQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM-PV   86 (95)
T ss_pred             EecCCcEEEEEEEeCCCCCe-EEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-cc
Confidence            88999999999999999998 999987652111       0112221 22233567999999999999999999872 23


Q ss_pred             ceecEEEE
Q psy3823         308 QRTPCTFH  315 (365)
Q Consensus       308 ~~~~~~l~  315 (365)
                      .++..+|.
T Consensus        87 ~~~~~~~~   94 (95)
T cd05882          87 RTAKATVT   94 (95)
T ss_pred             ccEEEEEE
Confidence            33444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.90  E-value=1.2e-08  Score=71.89  Aligned_cols=76  Identities=17%  Similarity=0.274  Sum_probs=55.4

Q ss_pred             CCcEEEEEEeCCCC--CcceEEEEeCCCcCCCCCC--c----eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          27 NEQVLVSCTVDANP--QAQYFTWAFNNSGTAPRPL--T----SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        27 G~~~~l~C~~~~~p--~~~~v~W~~~~~~~l~~~~--~----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      |+++.|.|.+.+.+  .. .+.|.+++.. .....  .    .........+.|.|.+++..|+|.|+|.|.|..+....
T Consensus         1 Ge~~~L~C~~~~~~~~~~-~~~W~~p~~~-~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~   78 (86)
T cd05862           1 GEKLVLNCTARTELNVGI-DFQWDYPGKK-EQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN   78 (86)
T ss_pred             CCcEEEEEEEEeCCCCcE-EEEEEcCCcc-cccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence            78999999965444  45 8999998865 32111  0    01112334568999999999999999999998887777


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      ...|.|
T Consensus        79 ~t~~~V   84 (86)
T cd05862          79 STIVIV   84 (86)
T ss_pred             cEEEEE
Confidence            777776

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>smart00410 IG_like Immunoglobulin like

Probab=98.89  E-value=3.1e-08  Score=69.43  Aligned_cols=82  Identities=23%  Similarity=0.291  Sum_probs=60.7

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeC-CCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFN-NSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      ...+.+|+++.|.|...+.+.+ .+.|+++ +.. +................|.|.+++.+|+|.|+|.+.+..+.....
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~-v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKL-LAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCC-eEEEEECCCEE-cCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            3556899999999997776777 9999998 665 542333232233335689999999999999999999777666555


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00410       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            66655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.89  E-value=3.1e-08  Score=69.43  Aligned_cols=82  Identities=23%  Similarity=0.291  Sum_probs=60.7

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeC-CCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFN-NSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      ...+.+|+++.|.|...+.+.+ .+.|+++ +.. +................|.|.+++.+|+|.|+|.+.+..+.....
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~-v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKL-LAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCC-eEEEEECCCEE-cCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            3556899999999997776777 9999998 665 542333232233335689999999999999999999777666555


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00409       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            66655

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.88  E-value=4.8e-09  Score=74.64  Aligned_cols=69  Identities=16%  Similarity=0.283  Sum_probs=54.1

Q ss_pred             cceecCCcEEEEEEEEec-----CCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         130 SVLNEGVDIYFDCHIQAN-----PPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~-----p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      ..+.+|+++.|.|...+.     |.+. +.|++|+.++.....  ....++.|.|.++..+|+|.|+|.+.+..+..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~-i~Wyk~~~~i~~~~~--~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~   78 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPP-VQWYKDCKLLEGDRK--RFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK   78 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCc-EEEeECCEECCCCcc--EEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence            356789999999976532     3455 999999998875332  22267899999999999999999999987653

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.87  E-value=1.2e-08  Score=72.63  Aligned_cols=73  Identities=12%  Similarity=0.134  Sum_probs=51.0

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCC-CCc------------eeEec---CCeEEEEEEccCCCCCCeEE
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPR-PLT------------SYSIQ---DGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~-~~~------------~~~~~---~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +.+.+|++++|.|...+.+.+ .+.|++++...... ...            .....   ......|+|.+++.+|+|.|
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY   80 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY   80 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence            457899999999997778888 99999776430111 000            00001   22345799999999999999


Q ss_pred             EEEEEeCCCC
Q psy3823          86 LCWARNEQGN   95 (365)
Q Consensus        86 ~C~a~~~~~~   95 (365)
                      .|.+.+...+
T Consensus        81 ~C~v~~~~~~   90 (94)
T cd07690          81 ICEVEDKKEE   90 (94)
T ss_pred             EEEECCccce
Confidence            9999876543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.85  E-value=1e-08  Score=72.69  Aligned_cols=79  Identities=11%  Similarity=0.140  Sum_probs=56.6

Q ss_pred             eecCccceeeeecCceEEEEEE-EeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCe-EEEEEEEc
Q psy3823         226 CKQSQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG-TLLCWARN  303 (365)
Q Consensus       226 ~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G-~Y~C~a~n  303 (365)
                      +.........+.+|+.+.|.|. ..|.|.|. +.|+.++........+.....+|   .|.|.+++.+|+| .|.|.|.|
T Consensus         5 ~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~-i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~   80 (95)
T cd05845           5 WPKEKIRPVEVEEGDSVVLPCNPPKSAVPLR-IYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHF   80 (95)
T ss_pred             CCccccceeEEecCCCEEEEecCCCCCCCCE-EEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEc
Confidence            3333334445899999999997 58999998 99997664322222222333344   4999999999999 79999999


Q ss_pred             CCccc
Q psy3823         304 EQGSQ  308 (365)
Q Consensus       304 ~~g~~  308 (365)
                      .....
T Consensus        81 ~~~~~   85 (95)
T cd05845          81 PGLRT   85 (95)
T ss_pred             ccccc
Confidence            86543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.85  E-value=3.4e-08  Score=67.56  Aligned_cols=65  Identities=15%  Similarity=0.320  Sum_probs=48.9

Q ss_pred             EEEEEEEEecCCCCeeEEEeCCeEEeeCCC---Cc-eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC
Q psy3823         138 IYFDCHIQANPPYKKLIWTHNGITISNNAS---AG-RIITNQTLVLQSVTRHSGGLYACSAINSQGEGG  202 (365)
Q Consensus       138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~---~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  202 (365)
                      ++|.|...+..|+..|+||+|+.++.....   .+ .....++|.+.....+|++.|+|+|.|+.+...
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~   70 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQ   70 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence            789999986444445999999999964321   11 122356799999999999999999999987643

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.84  E-value=1.5e-08  Score=67.08  Aligned_cols=61  Identities=18%  Similarity=0.343  Sum_probs=42.8

Q ss_pred             CceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCceeEeeCCCE--EEEEEcCCCcccCeEEEEEE
Q psy3823         239 NEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST--SVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       239 g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      |+.++|.|.+ .+.+... +.|++++........ .........  ..|.|.+++.+|+|.|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~-~~W~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTT-VTWSKNGQSLPEGST-TNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSE-EEEEETTTTTSEEEE-EEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcE-EEEEECCccccCcce-eEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 5555665 999998874432211 111222221  23999999999999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.83  E-value=4.9e-08  Score=69.49  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=52.2

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCC-------CCCCceeE-ecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTA-------PRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l-------~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      ..+.+.+|++++|.|.+.+.... .+.|++.+...+       ....+... ...+...+|.|.+++.+|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            34678999999999998777666 788887764411       22222222 2245677899999999999999999875

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.82  E-value=1.3e-08  Score=72.39  Aligned_cols=73  Identities=8%  Similarity=0.119  Sum_probs=52.8

Q ss_pred             EEEecCCcEEEEEE-eC----CCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          22 YGALRNEQVLVSCT-VD----ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        22 ~~v~~G~~~~l~C~-~~----~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      ..+.+|.+..|.|. ..    .++.+ .++|||++.. +...........+ .+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~-~v~WYKd~~~-l~~~~~~~~~~~~-~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDV-ELQWYKDSVL-LDKDNEKFYSLKG-STYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCC-cEEEccCCEE-CcCCCcceEecCC-CCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            34678999999997 22    34667 9999999988 6543322222111 2369999999999999999999986654


Q ss_pred             c
Q psy3823          97 R   97 (365)
Q Consensus        97 ~   97 (365)
                      .
T Consensus        82 ~   82 (95)
T cd05897          82 K   82 (95)
T ss_pred             E
Confidence            3

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.81  E-value=1.1e-08  Score=71.09  Aligned_cols=69  Identities=25%  Similarity=0.387  Sum_probs=52.0

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc-cceecEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG-SQRTPCTF  314 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l  314 (365)
                      +..|+.++|.|.+.+.|.+. +.|++++....         .....  +.+..+..+|.|.|+|.|.+..+ ..+.++.|
T Consensus        11 v~~g~~~~l~C~~~~~p~~~-~~w~~~~~~~~---------~~~~~--~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v   78 (80)
T PF13895_consen   11 VEEGDSVTLTCSVSGNPPPQ-VQWYKNGSPIN---------SSQNG--LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV   78 (80)
T ss_dssp             EETTSEEEEEEEEESSSSSE-EEEEETTEEEE---------EESSE--EEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEEccccee-eeeeeeeeeee---------eeeee--eeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence            78999999999999888887 99999754221         11111  66788999999999999999665 44555555


Q ss_pred             EE
Q psy3823         315 HV  316 (365)
Q Consensus       315 ~v  316 (365)
                      .|
T Consensus        79 ~V   80 (80)
T PF13895_consen   79 TV   80 (80)
T ss_dssp             EE
T ss_pred             eC
Confidence            54

...

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.81  E-value=1e-07  Score=67.79  Aligned_cols=86  Identities=14%  Similarity=0.091  Sum_probs=67.5

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-eeEec----CCeEEEEEEccCCCCCCeEEEEEEEeC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-SYSIQ----DGSTSVARYTPTSELEYGTLLCWARNE   92 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~a~~~   92 (365)
                      +.....|.+|+.+.|.|..++.|.+..+.|.+++.. +..... .....    ..-.+.|.+..+..+|.|.|+|.|.|.
T Consensus         9 ~~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~-l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~   87 (101)
T cd05860           9 INTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRT-LTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNS   87 (101)
T ss_pred             CCceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcc-cCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECC
Confidence            345677999999999999999999934999999876 433332 11111    124468999999999999999999999


Q ss_pred             CCCCcccEEEEE
Q psy3823          93 QGNQRTPCTFHV  104 (365)
Q Consensus        93 ~~~~~~~~~l~V  104 (365)
                      ......++.|.|
T Consensus        88 ~~~~s~tF~l~v   99 (101)
T cd05860          88 DASASVTFNVYV   99 (101)
T ss_pred             CCeEEEEEEEEE
Confidence            988888888876

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.78  E-value=5.7e-08  Score=67.47  Aligned_cols=78  Identities=21%  Similarity=0.273  Sum_probs=55.8

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-c
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-T   98 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~   98 (365)
                      ....+.+|+++.|.|...+ +.+ .+.|++++.. +...........+    |.|.+++.+|+|.|.|.+.-...... .
T Consensus         4 ~~~tv~~g~~v~L~C~~~s-~~A-~v~W~~ng~~-l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E~gf~~~~~   76 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRS-NLA-SPVWLFNGTP-LNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEEEGFQQLVA   76 (85)
T ss_pred             eEEEEecCCCEEEECCCCC-CCc-cEEEEECCcc-cCCCcceEEeCCC----CEEEECCHhhCEEEEEEEecCCCeEEEE
Confidence            4567899999999999766 466 9999999998 6543332323333    77899999999999999874332222 4


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      .+.|.|
T Consensus        77 ~y~l~v   82 (85)
T cd05872          77 SYSLNV   82 (85)
T ss_pred             EEEEEE
Confidence            455554

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.77  E-value=8.1e-08  Score=68.29  Aligned_cols=80  Identities=18%  Similarity=0.285  Sum_probs=55.7

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCC--CCC-CceeEeeCCCEEEEEEcCCCcccCeEEEEEEE-cCCcccee
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA--PRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCWAR-NEQGSQRT  310 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~--~~~-~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~-n~~g~~~~  310 (365)
                      .+.+|+.+.|.|.. +.|.|. +.|++.+....  ... ...+.....  ..|.|.+++.+|+|.|+|.|. |..+....
T Consensus         7 ~~~eG~~v~L~C~~-~~p~p~-v~Wykq~~g~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~   82 (91)
T cd05871           7 YGVENNSTFLECLP-KSPQAS-VKWLFQRGGDQRKEEVKTEERLIHTE--RGLLLRSLQRSDAGVYTCTAVEHSFSQTLA   82 (91)
T ss_pred             EEecCCcEEEEEEC-CCCCce-EEEEEECCCCCccccccccccEEEec--CeEEEeeCChhHCEEEEEEEEccCCeEEEE
Confidence            37889999999996 478887 99998432111  111 011111111  239999999999999999998 57776777


Q ss_pred             cEEEEEEc
Q psy3823         311 PCTFHVVK  318 (365)
Q Consensus       311 ~~~l~v~~  318 (365)
                      .++|+|..
T Consensus        83 ~~~l~v~~   90 (91)
T cd05871          83 KYTLHVIE   90 (91)
T ss_pred             EEEEEEec
Confidence            88887764

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.76  E-value=3.7e-08  Score=70.12  Aligned_cols=72  Identities=14%  Similarity=0.171  Sum_probs=51.5

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-CC------------ceeE---eeCCCEEEEEEcCCCcccCeEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-PL------------TSYS---IQDGSTSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-~~------------~~~~---~~~~~~s~l~i~~v~~~d~G~Y~C  299 (365)
                      +..|+.++|.|.+.+.+.+. +.|++++...... .+            +...   ........|.|.+++.+|+|.|.|
T Consensus         4 ~~~G~~VtL~C~~s~~~~~~-i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           4 GKKGDTAELPCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             eeCCCCEEEEEEeCCCCCcE-EEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            67899999999999888887 9999665321110 00            0101   112345679999999999999999


Q ss_pred             EEEcCCccc
Q psy3823         300 WARNEQGSQ  308 (365)
Q Consensus       300 ~a~n~~g~~  308 (365)
                      .|.|..+..
T Consensus        83 ~v~~~~~~~   91 (94)
T cd07690          83 EVEDKKEEV   91 (94)
T ss_pred             EECCccceE
Confidence            999876654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>smart00410 IG_like Immunoglobulin like

Probab=98.74  E-value=2.1e-07  Score=65.06  Aligned_cols=79  Identities=27%  Similarity=0.353  Sum_probs=59.8

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeC-CCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFN-NSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      +..|+.+.|.|.+.+.+.+. +.|+++ +.... ...............|.|.+++.+|+|.|.|.+.+..+.....+.|
T Consensus         6 ~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l   83 (86)
T smart00410        6 VKEGESVTLSCEVSGSPPPE-VTWYKQGGKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL   83 (86)
T ss_pred             EeCCCeEEEEEEEccCCCCe-EEEEECCCEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence            77899999999998887776 999998 44322 2233333333335679999999999999999999988887766666


Q ss_pred             EE
Q psy3823         315 HV  316 (365)
Q Consensus       315 ~v  316 (365)
                      .|
T Consensus        84 ~V   85 (86)
T smart00410       84 TV   85 (86)
T ss_pred             EE
Confidence            55

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.74  E-value=2.1e-07  Score=65.06  Aligned_cols=79  Identities=27%  Similarity=0.353  Sum_probs=59.8

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeC-CCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFN-NSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      +..|+.+.|.|.+.+.+.+. +.|+++ +.... ...............|.|.+++.+|+|.|.|.+.+..+.....+.|
T Consensus         6 ~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l   83 (86)
T smart00409        6 VKEGESVTLSCEVSGSPPPE-VTWYKQGGKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL   83 (86)
T ss_pred             EeCCCeEEEEEEEccCCCCe-EEEEECCCEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence            77899999999998887776 999998 44322 2233333333335679999999999999999999988887766666


Q ss_pred             EE
Q psy3823         315 HV  316 (365)
Q Consensus       315 ~v  316 (365)
                      .|
T Consensus        84 ~V   85 (86)
T smart00409       84 TV   85 (86)
T ss_pred             EE
Confidence            55

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.72  E-value=1.9e-07  Score=67.30  Aligned_cols=79  Identities=18%  Similarity=0.180  Sum_probs=54.0

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCC-------CCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDT-------APRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~-------~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      +.+|+.++|.|.+.+.+.+. +.|++.+...       .....++.. ........|.|.+++.+|+|.|+|.+.+... 
T Consensus         9 v~~G~~v~L~C~~~~~~~~~-v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-   86 (95)
T cd05717           9 VVEGGTATLKCRVKNNDNSS-LQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-   86 (95)
T ss_pred             EcCCCCEEEEEEECCCCCce-EEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-
Confidence            78999999999998877777 9998533211       011122222 2223445799999999999999999997653 


Q ss_pred             ceecEEEEE
Q psy3823         308 QRTPCTFHV  316 (365)
Q Consensus       308 ~~~~~~l~v  316 (365)
                      .+..+.|.|
T Consensus        87 ~~~~~~~~v   95 (95)
T cd05717          87 QTAKATVTV   95 (95)
T ss_pred             ceEEEEEEC
Confidence            355555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.70  E-value=9.1e-08  Score=68.22  Aligned_cols=87  Identities=20%  Similarity=0.271  Sum_probs=57.6

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI  195 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  195 (365)
                      +|.+.+.+.     ..+.+|++|+|.|... .+... +.|+++|...... ..........+.|.+++.+|+|.|+|.+.
T Consensus         2 kP~L~a~p~-----~vV~~G~~VtL~C~~~-~~~~~-f~l~k~g~~~~~~-~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~   73 (91)
T cd05751           2 KPSLWAEPS-----SVVPLGKPVTLRCQGP-YGAVE-YRLYREGSTFAVK-KPPEPQNKAKFFIPSMKREHAGRYRCYYR   73 (91)
T ss_pred             CCEEEecCC-----CccCCCCcEEEEEecC-CCCCE-EEEEECCCCcccc-ccCCCceeEEEEccCCChhHCEEEEEEEE
Confidence            456555542     3678999999999875 33334 8999988754321 11111224679999999999999999998


Q ss_pred             cCC-C-CCCcccEEEEE
Q psy3823         196 NSQ-G-EGGSTPFDLNI  210 (365)
Q Consensus       196 ~~~-~-~~~s~~~~l~v  210 (365)
                      +.. + ...+..+.|.|
T Consensus        74 ~~~~~~S~~Sd~lel~V   90 (91)
T cd05751          74 SGVALWSEPSDPLELVV   90 (91)
T ss_pred             CCCCccCCCCCcEEEEe
Confidence            763 2 23444455544

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.67  E-value=1.6e-07  Score=65.62  Aligned_cols=67  Identities=25%  Similarity=0.311  Sum_probs=48.6

Q ss_pred             cEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCcee-EecCC----eEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          29 QVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSY-SIQDG----STSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        29 ~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~-~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+.|.|.+. ++|.+ .++|++++.. +....... ...++    ..+.|.+.+...+|.|.|+|.|.|......
T Consensus         1 ~~~L~C~v~g~~P~~-~v~W~~~g~~-l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~   73 (82)
T cd05759           1 PYNLTCRARGAKPAA-EIIWFRDGEV-LDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG   73 (82)
T ss_pred             CEEEEEEEeCccCCC-EEEEEECCEE-ccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence            368999964 47988 9999999987 65433211 11222    345788988888899999999998776554

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.67  E-value=8.2e-08  Score=68.50  Aligned_cols=70  Identities=16%  Similarity=0.253  Sum_probs=51.5

Q ss_pred             ceecCCcEEEEEEEE----------ecCCCCeeEEEeCCeEEeeCCC-----CceEEeeceEEEeeecCCCCeEEEEEEE
Q psy3823         131 VLNEGVDIYFDCHIQ----------ANPPYKKLIWTHNGITISNNAS-----AGRIITNQTLVLQSVTRHSGGLYACSAI  195 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~----------~~p~~~~i~W~~~~~~l~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  195 (365)
                      .+.+|+.+.|.|..-          +.....++.|+|++..+.....     .++......|.|.++..+|+|.|+|.+.
T Consensus        11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~r   90 (104)
T cd05896          11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLR   90 (104)
T ss_pred             EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEEC
Confidence            577999999999851          1122334999999755543221     2455567899999999999999999999


Q ss_pred             cCCCC
Q psy3823         196 NSQGE  200 (365)
Q Consensus       196 ~~~~~  200 (365)
                      |....
T Consensus        91 N~t~C   95 (104)
T cd05896          91 NSTYC   95 (104)
T ss_pred             CCCcc
Confidence            87643

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.67  E-value=1.6e-07  Score=64.52  Aligned_cols=74  Identities=19%  Similarity=0.184  Sum_probs=55.6

Q ss_pred             cEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCcee-E--ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-ccEEEE
Q psy3823          29 QVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSY-S--IQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-TPCTFH  103 (365)
Q Consensus        29 ~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~-~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~~~l~  103 (365)
                      .+.|.|. .+++|.+ .++||+++.. +....... .  ......++|.|.+...+|+..|+|.|.|..-... ....|.
T Consensus         1 ~~~L~C~s~gSkP~A-~I~W~k~~~~-l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~   78 (82)
T cd05883           1 EIELNCTAMASKPAA-TIRWFKGNKE-LTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLE   78 (82)
T ss_pred             CEEEEEEecCCCCCC-EEEEEECCEE-CcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEE
Confidence            3689999 8889999 9999999998 76543311 1  1234677899999999999999999998664322 556666


Q ss_pred             E
Q psy3823         104 V  104 (365)
Q Consensus       104 V  104 (365)
                      |
T Consensus        79 V   79 (82)
T cd05883          79 V   79 (82)
T ss_pred             E
Confidence            5

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.65  E-value=1.7e-07  Score=68.20  Aligned_cols=81  Identities=9%  Similarity=0.046  Sum_probs=53.4

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCC--------C-----------CceeEecCCeEEEEEEccCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPR--------P-----------LTSYSIQDGSTSVARYTPTS   78 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~--------~-----------~~~~~~~~~~~~~l~i~~~~   78 (365)
                      ++....+.+|+++.|.|.....+.. .++|+|+... ...        .           .+.....++   +|.|.+++
T Consensus         4 e~~p~~~~~G~~V~L~v~~~p~~~~-~~~W~kg~~~-~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~   78 (105)
T cd05774           4 ELVPPQVAEGENVLLLVHNLPENLL-AYAWYKGKTV-SPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVT   78 (105)
T ss_pred             eccCCcccCCCCEEEEecCCCCCce-EEEEEcCCCC-CCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCC
Confidence            4455667899999999974333334 9999997432 100        0           001122334   89999999


Q ss_pred             CCCCeEEEEEEEeCCCC-CcccEEEE
Q psy3823          79 ELEYGTLLCWARNEQGN-QRTPCTFH  103 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~~~-~~~~~~l~  103 (365)
                      ..|+|.|+|.+.+.... ....+.|.
T Consensus        79 ~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          79 QKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             cccCEEEEEEEEeCCccEEEEEEEEE
Confidence            99999999999887643 23555544

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PHA03376 BARF1; Provisional

Probab=98.64  E-value=4.7e-07  Score=70.65  Aligned_cols=126  Identities=15%  Similarity=0.162  Sum_probs=74.9

Q ss_pred             EEEEecCCcEEEEEEeC--CCCCcceEEEEeCCC----cCCCC----------CCcee--EecCCeEEEEEEccCCCCCC
Q psy3823          21 IYGALRNEQVLVSCTVD--ANPQAQYFTWAFNNS----GTAPR----------PLTSY--SIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~--~~p~~~~v~W~~~~~----~~l~~----------~~~~~--~~~~~~~~~l~i~~~~~~d~   82 (365)
                      .+.+..|+.+.|+|...  .......+.|+|.+.    ..+..          ..+.+  ...+...-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            56678899999999833  222223999999532    10100          00001  11122445799999999999


Q ss_pred             eEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCe
Q psy3823          83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGI  160 (365)
Q Consensus        83 G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~  160 (365)
                      |+|+|............-.|++         ..|-.+.++...    .....-+..++.|..-|+|.|. +.|..+..
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~---------V~~~~Lsv~a~~----~dFp~~~~~~i~C~sggfP~P~-~~Wle~~~  163 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSV---------VKPLTLSVHSER----SQFPDFSVLTVTCTVNAFPHPH-VQWLMPEG  163 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeee---------eecceEEEEecc----ccCCCCCeeEEEEecCCcCCch-heeccccC
Confidence            9999998754432223333443         223333443321    0122246678999976888888 99997543

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.63  E-value=2.9e-07  Score=65.61  Aligned_cols=63  Identities=11%  Similarity=0.107  Sum_probs=48.3

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      +..|++++|.|... .+... +.|+++|.......    ....+....|.|.+++.+|+|.|+|.+.+.
T Consensus        13 V~~G~~VtL~C~~~-~~~~~-f~l~k~g~~~~~~~----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          13 VPLGKPVTLRCQGP-YGAVE-YRLYREGSTFAVKK----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             cCCCCcEEEEEecC-CCCCE-EEEEECCCCccccc----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            78999999999885 55565 99999887432211    112344567999999999999999999987

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.60  E-value=4.7e-07  Score=67.15  Aligned_cols=74  Identities=12%  Similarity=0.114  Sum_probs=51.2

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CC--------------C--CCceeE-ecCCeEEEEEEccCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-AP--------------R--PLTSYS-IQDGSTSVARYTPTSE   79 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~--------------~--~~~~~~-~~~~~~~~l~i~~~~~   79 (365)
                      .++...+.+|++++|.|...+ +.. .+.|||..... ..              .  ..+... ........|.|.+++.
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~~~-~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-GHD-NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-CCC-EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            456788999999999999765 666 89999964310 00              0  011111 1222456899999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy3823          80 LEYGTLLCWARNEQ   93 (365)
Q Consensus        80 ~d~G~Y~C~a~~~~   93 (365)
                      +|+|.|.|.+....
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          82 EDSAVYLCASSLGG   95 (110)
T ss_pred             hhCEEEEEEeeCCC
Confidence            99999999987643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.59  E-value=5.4e-07  Score=61.90  Aligned_cols=74  Identities=15%  Similarity=0.260  Sum_probs=54.3

Q ss_pred             EEEEEEEEecCCCCeeEEEeCCeEEeeCCCC-----ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         138 IYFDCHIQANPPYKKLIWTHNGITISNNASA-----GRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      +.|.|.+.|..|+..|+||+++.++......     ......++|.+..-..+|+..|+|+|.|+.-........|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            6899999986666669999999988653211     1122356788888888899999999999865444456677766

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.58  E-value=7.8e-07  Score=65.88  Aligned_cols=74  Identities=11%  Similarity=0.182  Sum_probs=51.8

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------------CCCCceeEe--cCCeEEEEEEccCCCCCCe
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------------PRPLTSYSI--QDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------------~~~~~~~~~--~~~~~~~l~i~~~~~~d~G   83 (365)
                      +..+.+.+|++++|.|...+.+.. .+.||+..... .            ....+....  .......|.|.+++.+|+|
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFY-YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCcc-EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            456778999999999997666666 99999864210 0            001111111  2235668999999999999


Q ss_pred             EEEEEEEeCC
Q psy3823          84 TLLCWARNEQ   93 (365)
Q Consensus        84 ~Y~C~a~~~~   93 (365)
                      .|.|.+.+..
T Consensus        84 ~Y~C~~~~~~   93 (109)
T cd04983          84 VYFCALSESG   93 (109)
T ss_pred             EEEEEEecCC
Confidence            9999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.57  E-value=5e-07  Score=63.07  Aligned_cols=72  Identities=24%  Similarity=0.355  Sum_probs=48.5

Q ss_pred             EEEEEEEee-eCCCceeEEEeCCCCCCCCCCceeEeeCC----CEEEEEEcCCCcccCeEEEEEEEcCCccc--eecEEE
Q psy3823         242 VLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYSIQDG----STSVARYTPTSELEYGTLLCWARNEQGSQ--RTPCTF  314 (365)
Q Consensus       242 ~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~~~~~~~----~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l  314 (365)
                      +.|.|.+.| .|.+. +.|+++|..............++    ..+.|.+.....+|.|.|+|.|.|.....  +.+++|
T Consensus         2 ~~L~C~v~g~~P~~~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAE-IIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCE-EEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            689999987 58787 99999886543221111112232    24578888888888999999999977543  344443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.57  E-value=2e-07  Score=63.64  Aligned_cols=74  Identities=28%  Similarity=0.536  Sum_probs=48.6

Q ss_pred             CeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEc
Q psy3823         117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAIN  196 (365)
Q Consensus       117 p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  196 (365)
                      |.+.+.+..     .+..+..++|.|.+.+.+++..+.|+ +..................|.|.++..+|.|.|+|.|.|
T Consensus         2 P~I~~~~~~-----~~~~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPP-----VVTSGGSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTS-----EEETTEEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCC-----cEeeceeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            555555432     23344449999999987755559999 222221111122333467899999999999999999986

...

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.56  E-value=2.2e-07  Score=64.50  Aligned_cols=77  Identities=17%  Similarity=0.400  Sum_probs=55.9

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      ..+.+|+++.|.|...+.. .. +.|+++|..+...  .+.......|.|..++..|+|.|.|.+.-......-..+.|.
T Consensus         6 ~tv~~g~~v~L~C~~~s~~-A~-v~W~~ng~~l~~~--~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~   81 (85)
T cd05872           6 RTVAPGADVVLPCQLRSNL-AS-PVWLFNGTPLNAQ--FSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLN   81 (85)
T ss_pred             EEEecCCCEEEECCCCCCC-cc-EEEEECCcccCCC--cceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEE
Confidence            4678999999999987753 34 9999999988642  334555667889999999999999998744332222334444


Q ss_pred             E
Q psy3823         210 I  210 (365)
Q Consensus       210 v  210 (365)
                      |
T Consensus        82 v   82 (85)
T cd05872          82 V   82 (85)
T ss_pred             E
Confidence            4

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.55  E-value=2.2e-07  Score=66.09  Aligned_cols=71  Identities=10%  Similarity=0.142  Sum_probs=49.6

Q ss_pred             eecCceEEEEEEE-eee----CCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823         236 ALRNEQVLVSCTV-DAN----PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR  309 (365)
Q Consensus       236 ~~~g~~~~l~C~~-~~~----p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~  309 (365)
                      +..|....|.|.- .++    +.+. +.|++++.+............+  .+.|.|.++..+|+|.|+|.|.+..|...
T Consensus         7 ~~~~~~~~l~Cp~~~~f~~~~~~~~-v~WYKd~~~l~~~~~~~~~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897           7 LFTSTSGKLVCPDLSDFTINRTDVE-LQWYKDSVLLDKDNEKFYSLKG--STYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             eccccCcEEECCCHHHcccCCCCCc-EEEccCCEECcCCCcceEecCC--CCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            6678899999963 333    5556 9999998753322211111112  23599999999999999999999987653

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.54  E-value=3.9e-07  Score=65.23  Aligned_cols=75  Identities=9%  Similarity=0.007  Sum_probs=54.0

Q ss_pred             EEEEecCCcEEEEEE-eCCCCCcc-eEEEEeCCCcCCCCCCcee--EecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          21 IYGALRNEQVLVSCT-VDANPQAQ-YFTWAFNNSGTAPRPLTSY--SIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~-~~~~p~~~-~v~W~~~~~~~l~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      ...+.+|+.++|.|. .++.|.+. .++||+++.. +.......  ........+|.+.....+|...|+|.|.+.....
T Consensus        10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~-l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~   88 (100)
T cd05755          10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNET-LSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE   88 (100)
T ss_pred             CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEE-cccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence            344689999999999 66788882 3799999998 65533211  1123345578888777878889999999877654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.54  E-value=1.3e-06  Score=62.19  Aligned_cols=67  Identities=15%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCC-------CCCCceeEee-CCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA-------PRPLTSYSIQ-DGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~-------~~~~~~~~~~-~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      +.+|++++|.|.+.+..... +.|++.+....       ....++.... ++....|.|++++.+|+|.|.|.+..
T Consensus         9 v~~G~ta~L~C~v~~~~~~~-v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           9 VVEGEVAIISCRVKNNDDSV-IQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             EcCCCcEEEEEEEccCCccE-EEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            88999999999998876665 88886653211       1222333222 46677899999999999999999975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PHA03376 BARF1; Provisional

Probab=98.52  E-value=8.3e-06  Score=63.83  Aligned_cols=124  Identities=16%  Similarity=0.191  Sum_probs=72.3

Q ss_pred             ceecCCcEEEEEEEE--ecCCCCeeEEEeCC----eEEe----------eCCCCceE-----EeeceEEEeeecCCCCeE
Q psy3823         131 VLNEGVDIYFDCHIQ--ANPPYKKLIWTHNG----ITIS----------NNASAGRI-----ITNQTLVLQSVTRHSGGL  189 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~--~~p~~~~i~W~~~~----~~l~----------~~~~~~~~-----~~~~~l~i~~~~~~d~G~  189 (365)
                      ....|+++.|.|...  ......+|.|++.+    ..+-          .....+..     ..+.+|.|.+++..|.|.
T Consensus        22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGt  101 (221)
T PHA03376         22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN  101 (221)
T ss_pred             hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCce
Confidence            566899999999765  22344558999942    2111          11111111     125579999999999999


Q ss_pred             EEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceec-CccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCC
Q psy3823         190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQ-SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP  268 (365)
Q Consensus       190 Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~  268 (365)
                      |+|.+........ ..-.|++.          -+-..+. .....  ...-....+.|...|+|.|. +.|..+.+.+..
T Consensus       102 Y~C~fQkge~~~~-k~ehLt~V----------~~~~Lsv~a~~~d--Fp~~~~~~i~C~sggfP~P~-~~Wle~~~~~~~  167 (221)
T PHA03376        102 YLCRMKLGETEVT-KQEHLSVV----------KPLTLSVHSERSQ--FPDFSVLTVTCTVNAFPHPH-VQWLMPEGVEPA  167 (221)
T ss_pred             EEEEEEcCCCcee-eeeeeeee----------ecceEEEEecccc--CCCCCeeEEEEecCCcCCch-heeccccCCCCC
Confidence            9999986543222 11122222          0000110 00111  11246678899988899998 999987654433

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.47  E-value=1.1e-06  Score=64.74  Aligned_cols=79  Identities=13%  Similarity=0.185  Sum_probs=51.8

Q ss_pred             cCCcEEEEEEeCCCC-----CcceEEEEeCCCc-------CCCCCC----------ceeE-ecCCeEEEEEEccCCCCCC
Q psy3823          26 RNEQVLVSCTVDANP-----QAQYFTWAFNNSG-------TAPRPL----------TSYS-IQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        26 ~G~~~~l~C~~~~~p-----~~~~v~W~~~~~~-------~l~~~~----------~~~~-~~~~~~~~l~i~~~~~~d~   82 (365)
                      .|++++|.|.....|     ....+.|+|....       .+....          +... .......+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999854442     2227999996421       000000          0011 1112345899999999999


Q ss_pred             eEEEEEEEeCCCCCcccEEEEE
Q psy3823          83 GTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        83 G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |.|.|.+.+..+.....+.|.|
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v  102 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRL  102 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEE
Confidence            9999999887776667777777

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.46  E-value=1.8e-06  Score=61.85  Aligned_cols=68  Identities=16%  Similarity=0.146  Sum_probs=47.5

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      ...|.+|++|+|.|.... +.. .+.|+|++.. .................|.|.+++.+|+|.|+|....
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~-~f~l~k~g~~-~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFD-RFILYKEGRS-KPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCC-EEEEEECCCC-CCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            345789999999998543 445 8999999876 3221100111233445789999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.45  E-value=1.2e-06  Score=62.71  Aligned_cols=73  Identities=10%  Similarity=0.017  Sum_probs=48.2

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC--------Cc--------eeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP--------LT--------SYSIQDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~--------~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      |++|+|.|.....+.. .+.|+++... ....        ..        .+...... .+|.|.+++.+|+|.|+|.+.
T Consensus         1 G~~VtL~c~~~~~~~~-~i~W~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQ-EITWYKGKDK-SVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCE-EEEEECCCCC-CcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEE
Confidence            8999999985544555 9999998754 2110        00        01111112 589999999999999999998


Q ss_pred             eCCCCCc-ccEEE
Q psy3823          91 NEQGNQR-TPCTF  102 (365)
Q Consensus        91 ~~~~~~~-~~~~l  102 (365)
                      ...+... ..+.|
T Consensus        78 ~~~~~~~~~~~~l   90 (92)
T cd05741          78 STNGVTENAKFFL   90 (92)
T ss_pred             cCCCcEEEEEEEE
Confidence            7664332 44444

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.44  E-value=2.1e-06  Score=63.18  Aligned_cols=80  Identities=14%  Similarity=0.186  Sum_probs=54.2

Q ss_pred             cCceEEEEEEEeeeC-----CCceeEEEeCCCCCCCC-----------------CCceeEee-CCCEEEEEEcCCCcccC
Q psy3823         238 RNEQVLVSCTVDANP-----QAQYFTWAFNNSDTAPR-----------------PLTSYSIQ-DGSTSVARYTPTSELEY  294 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p-----~~~~~~W~~~~~~~~~~-----------------~~~~~~~~-~~~~s~l~i~~v~~~d~  294 (365)
                      .|++++|.|.....|     ....+.|++........                 ..+..+.. ......|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999987653     11159999864211100                 01111111 12245699999999999


Q ss_pred             eEEEEEEEcCCccceecEEEEEE
Q psy3823         295 GTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       295 G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      |.|.|.+.+..+..+..+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999999988888877775

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.42  E-value=2.2e-06  Score=63.06  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=54.8

Q ss_pred             cCceEEEEEEEeeeC------CCceeEEEeCCCCCCCC-------CCc--------eeE---eeCCCEEEEEEcCCCccc
Q psy3823         238 RNEQVLVSCTVDANP------QAQYFTWAFNNSDTAPR-------PLT--------SYS---IQDGSTSVARYTPTSELE  293 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p------~~~~~~W~~~~~~~~~~-------~~~--------~~~---~~~~~~s~l~i~~v~~~d  293 (365)
                      .|++++|.|.....+      .. .+.|++........       ...        .+.   ........|.|.+++.+|
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~-~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD   79 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGP-RIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLED   79 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCc-EEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHH
Confidence            489999999997653      23 59999863100000       000        011   112345679999999999


Q ss_pred             CeEEEEEEEcCCccceecEEEEEEc
Q psy3823         294 YGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       294 ~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      +|.|.|.+.+..+..+..+.|.|..
T Consensus        80 ~G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          80 SGRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             CEEEEEEEEcCCCceEEEEEEEEEE
Confidence            9999999999888888888887763

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.42  E-value=1.5e-06  Score=63.89  Aligned_cols=79  Identities=11%  Similarity=0.125  Sum_probs=52.0

Q ss_pred             cCCcEEEEEEeCCCC-----CcceEEEEeCC--C-c----CCCCCCc--------eeE---ecCCeEEEEEEccCCCCCC
Q psy3823          26 RNEQVLVSCTVDANP-----QAQYFTWAFNN--S-G----TAPRPLT--------SYS---IQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        26 ~G~~~~l~C~~~~~p-----~~~~v~W~~~~--~-~----~l~~~~~--------~~~---~~~~~~~~l~i~~~~~~d~   82 (365)
                      .|++++|.|.....+     ....+.|++..  . .    .+.....        .+.   .......+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999954432     22399999973  1 1    0000000        011   1123456899999999999


Q ss_pred             eEEEEEEEeCCCCCcccEEEEE
Q psy3823          83 GTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        83 G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |.|.|.+.+..+.....+.|.|
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V  102 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEV  102 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEE
Confidence            9999999987665567777777

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.42  E-value=3.3e-06  Score=62.12  Aligned_cols=72  Identities=13%  Similarity=0.215  Sum_probs=49.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC-CcceEEEEeCCCc----CCC-------C--CCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP-QAQYFTWAFNNSG----TAP-------R--PLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p-~~~~v~W~~~~~~----~l~-------~--~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      +....+.+|++++|.|...+.. .. .+.|||....    .+.       .  ..+...........|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~   85 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSN-YLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV   85 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCC-cEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence            4567789999999999975554 45 8999985421    000       0  011111223345579999999999999


Q ss_pred             EEEEEEe
Q psy3823          85 LLCWARN   91 (365)
Q Consensus        85 Y~C~a~~   91 (365)
                      |.|.+.+
T Consensus        86 Y~Ca~~~   92 (106)
T cd04980          86 YYCQQYG   92 (106)
T ss_pred             EEEEEeC
Confidence            9999864

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.41  E-value=1.7e-06  Score=63.55  Aligned_cols=71  Identities=15%  Similarity=0.198  Sum_probs=48.4

Q ss_pred             EEecCCcEEEEEEeCCC-CCcceEEEEeCCCcC-CC---------------CCCceeEe--cCCeEEEEEEccCCCCCCe
Q psy3823          23 GALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGT-AP---------------RPLTSYSI--QDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~-l~---------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G   83 (365)
                      .+.+|++++|.|..... +.. .+.|++..... ..               ...+....  ......+|.|.+++.+|+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSY-YIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcc-eEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            47899999999996554 455 99999964310 00               00111111  1125568999999999999


Q ss_pred             EEEEEEEeCCC
Q psy3823          84 TLLCWARNEQG   94 (365)
Q Consensus        84 ~Y~C~a~~~~~   94 (365)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.40  E-value=0.00021  Score=63.25  Aligned_cols=206  Identities=13%  Similarity=0.131  Sum_probs=114.2

Q ss_pred             EecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc--ccEE
Q psy3823          24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR--TPCT  101 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~--~~~~  101 (365)
                      +.+|+.+.+.-..+. -.. .+.|--+... -.........+..-...|.|..++...+|.|+=...+..+...  ..++
T Consensus       139 a~~~g~l~y~sa~~~-~~~-~~~~a~ga~P-g~~P~~y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~Vt  215 (466)
T PHA03270        139 APPGGELVYDSAPNR-TDP-RVRWAEGAGP-GARPRLYSVEGTFPTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTR  215 (466)
T ss_pred             cCCCceEEeccCccc-cCc-ccccccCCCC-CCCCccccccCCCCcceEEEEEcccccceEEEEEEecCCCceeeeeEEE
Confidence            345666655443321 233 6777643322 1111111112233334799999999999999998777665433  4456


Q ss_pred             EEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-C-CCCeeEEEeCCeEEeeCCCCceEE---eece
Q psy3823         102 FHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-P-PYKKLIWTHNGITISNNASAGRII---TNQT  176 (365)
Q Consensus       102 l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~i~W~~~~~~l~~~~~~~~~~---~~~~  176 (365)
                      +..         +.+|.+.+.+.      .+.+|+...-.|.+..+ | ...++.||.|+.++..........   .++.
T Consensus       216 V~~---------yr~Psvsv~~~------PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGf  280 (466)
T PHA03270        216 VRM---------FRRPSLSIRPH------AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGF  280 (466)
T ss_pred             EEE---------ecCCcccccCC------ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCe
Confidence            665         77888777554      36699999999999854 3 334588999999885322111111   1222


Q ss_pred             EEEeeecCCCC------eEEEEEEEcC-CCCCC---cccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEE
Q psy3823         177 LVLQSVTRHSG------GLYACSAINS-QGEGG---STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSC  246 (365)
Q Consensus       177 l~i~~~~~~d~------G~Y~C~~~~~-~~~~~---s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  246 (365)
                      ..++-++..+.      -+.+|++.-. .....   +....-.|.          .+|.+..      ....|+-   .|
T Consensus       281 s~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY----------~~P~Isv------~F~dG~A---VC  341 (466)
T PHA03270        281 SATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVL----------PRPTIEM------EFGGDEA---VC  341 (466)
T ss_pred             eEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccc----------cCCeEEE------EEeCCEE---EE
Confidence            22333333222      3679998633 22222   222233333          4444332      1333333   38


Q ss_pred             EEeeeCCCceeEEEeCCCCC
Q psy3823         247 TVDANPQAQYFTWAFNNSDT  266 (365)
Q Consensus       247 ~~~~~p~~~~~~W~~~~~~~  266 (365)
                      ++.--|....+.|+.++...
T Consensus       342 tA~CVPegV~l~W~V~D~~~  361 (466)
T PHA03270        342 TAACVPEGVTLAWLLGADPA  361 (466)
T ss_pred             eccccCCCCEEEEEecCCCC
Confidence            88766655579999877544

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.39  E-value=2.4e-06  Score=59.53  Aligned_cols=67  Identities=16%  Similarity=0.229  Sum_probs=47.0

Q ss_pred             cEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEe-cCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          29 QVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSI-QDG---STSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        29 ~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+.|.|. .+++|.+ .++|++++.. +......... .++   ..+.|.+.....++.+.|+|.|.+......
T Consensus         1 ~~~L~C~~~~~~P~~-~v~W~~~~~~-l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~~   72 (82)
T cd05761           1 EVELTCTSSGSKPAA-TIRWFKGDKE-LKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKST   72 (82)
T ss_pred             CEEEEEEecCcCcCC-eEEEEECCEE-ccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCCC
Confidence            3689999 5667998 9999999988 6543311111 222   334577777777788999999998776653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.39  E-value=2e-06  Score=62.09  Aligned_cols=78  Identities=13%  Similarity=0.148  Sum_probs=51.0

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCc---CC-----CCCCc---------eeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSG---TA-----PRPLT---------SYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~---~l-----~~~~~---------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      |++++|.|..........+.|+|....   .+     .....         ..........+|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998544433337999985321   00     00000         01112234568999999999999999997


Q ss_pred             E-eCCCCCcccEEEEE
Q psy3823          90 R-NEQGNQRTPCTFHV  104 (365)
Q Consensus        90 ~-~~~~~~~~~~~l~V  104 (365)
                      . .+.|.....+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            6 46666667788877

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.39  E-value=3.6e-06  Score=58.66  Aligned_cols=66  Identities=20%  Similarity=0.301  Sum_probs=48.0

Q ss_pred             cEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeE-ecCC-e---EEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          29 QVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYS-IQDG-S---TSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        29 ~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~-~~~~-~---~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .++|.|. .+++|.+ .|+|++++.. +........ ..++ +   .+.|.+.....+|...|+|.|.+.....
T Consensus         1 ~~~LtC~a~g~~P~~-~ItW~k~g~~-l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           1 KAKLRCTSSGSKPAA-NIKWRKGDQE-LEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             CEEEEEEecCccCCC-EeEEEECCEE-CCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            3689999 6667998 9999999988 665433222 2232 2   2567777778889999999999887654

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.38  E-value=9.9e-07  Score=63.63  Aligned_cols=79  Identities=14%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             ecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCCCC------Cc--------eeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          25 LRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRP------LT--------SYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        25 ~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~------~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      ..|++|+|.|.... .... .+.|++.....+...      ..        .+..-+.....|.|.+++.+|+|.|.|.+
T Consensus         2 ~~G~sVtL~c~~~~~~~~~-~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v   80 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIE-SITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI   80 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEE-EEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence            46999999998533 3344 999998753211110      00        01112233458999999999999999999


Q ss_pred             EeCCCCCc-ccEEEEE
Q psy3823          90 RNEQGNQR-TPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~-~~~~l~V  104 (365)
                      ....+... ..+.|.|
T Consensus        81 ~~~~~~~~~~~f~L~v   96 (97)
T cd05775          81 NTKNGVTITKEFTLHI   96 (97)
T ss_pred             EcCCCCeEEEEEEEEe
Confidence            88775543 6666665

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.38  E-value=3.6e-06  Score=62.77  Aligned_cols=85  Identities=13%  Similarity=0.160  Sum_probs=51.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC-C--cceEEEEeCC---Cc--CC---CCC-----C-c--eeE--e--cCCeEEEEEEc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP-Q--AQYFTWAFNN---SG--TA---PRP-----L-T--SYS--I--QDGSTSVARYT   75 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p-~--~~~v~W~~~~---~~--~l---~~~-----~-~--~~~--~--~~~~~~~l~i~   75 (365)
                      +..+.+.+|+.++|.|.....+ .  ...+.|++..   ..  .+   ...     . .  .+.  .  ......+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4567789999999999943222 1  1279997521   11  00   000     0 0  011  0  11234579999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCCc--ccEEEE
Q psy3823          76 PTSELEYGTLLCWARNEQGNQR--TPCTFH  103 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~~~~--~~~~l~  103 (365)
                      +++.+|+|.|+|.+.+......  ..+.|+
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            9999999999999998665422  444444

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.38  E-value=1.2e-06  Score=63.72  Aligned_cols=77  Identities=19%  Similarity=0.308  Sum_probs=50.5

Q ss_pred             ceecCCcEEEEEEEEecCCCCeeEEEeCCe-----EEee-------------CCCCceEEeeceEEEeeecCCCCeEEEE
Q psy3823         131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGI-----TISN-------------NASAGRIITNQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~-----~l~~-------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  192 (365)
                      .+.+|++|.|.|.....+. ..+.|+++..     .+-.             ...+.....+++|.|++++..|+|.|+|
T Consensus         9 ~~~~G~~V~L~v~~~p~~~-~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~   87 (105)
T cd05774           9 QVAEGENVLLLVHNLPENL-LAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL   87 (105)
T ss_pred             cccCCCCEEEEecCCCCCc-eEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence            4679999999996532222 2499999521     2210             1112234447899999999999999999


Q ss_pred             EEEcCCCCCCcccEEE
Q psy3823         193 SAINSQGEGGSTPFDL  208 (365)
Q Consensus       193 ~~~~~~~~~~s~~~~l  208 (365)
                      .+.+.........+.|
T Consensus        88 ~v~~~~~~~~~~~v~l  103 (105)
T cd05774          88 QTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEeCCccEEEEEEEE
Confidence            9998775433233333

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.38  E-value=5.7e-06  Score=61.91  Aligned_cols=77  Identities=19%  Similarity=0.282  Sum_probs=48.2

Q ss_pred             ceEEEEecCCcEEEEEEeCC-CC--CcceEEEEeCCCc-----C-C--------C-CCCce--e--Ee--cCCeEEEEEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDA-NP--QAQYFTWAFNNSG-----T-A--------P-RPLTS--Y--SI--QDGSTSVARY   74 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~-~p--~~~~v~W~~~~~~-----~-l--------~-~~~~~--~--~~--~~~~~~~l~i   74 (365)
                      +..+.+.+|++++|.|.... .+  ....+.|++....     . +        . .....  +  ..  ......+|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            55677889999999998432 22  1127999874321     0 0        0 00000  0  01  1123357999


Q ss_pred             ccCCCCCCeEEEEEEEeCCCC
Q psy3823          75 TPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        75 ~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      .+++.+|+|.|.|.+.+....
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999976554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.37  E-value=4e-06  Score=60.97  Aligned_cols=78  Identities=12%  Similarity=0.165  Sum_probs=49.8

Q ss_pred             CceEEEEEEEeeeCCC--ceeEEEeCCCCCC----------C--C----CCceeEe---eCCCEEEEEEcCCCcccCeEE
Q psy3823         239 NEQVLVSCTVDANPQA--QYFTWAFNNSDTA----------P--R----PLTSYSI---QDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~--~~~~W~~~~~~~~----------~--~----~~~~~~~---~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      |++++|.|........  ..+.|++......          .  .    ..+..+.   .......|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            6789999998532221  1588877542110          0  0    0111111   112345799999999999999


Q ss_pred             EEEEEcCCccceecEEEEE
Q psy3823         298 LCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       298 ~C~a~n~~g~~~~~~~l~v  316 (365)
                      +|.+.|..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998888777777665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.36  E-value=3.8e-06  Score=60.12  Aligned_cols=64  Identities=17%  Similarity=0.235  Sum_probs=45.2

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +..|++++|.|.... +... +.|+++|.......... ....+....+.|.+++.+|+|.|+|...
T Consensus        12 V~~G~~VTL~C~~~~-~~~~-f~l~k~g~~~~~~~~~~-~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          12 VPSGENVTLQCHSDI-RFDR-FILYKEGRSKPVLHLYE-KHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             cCCCCeEEEEEecCC-CCCE-EEEEECCCCCCceeccc-ccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            789999999998754 4444 99999887432211000 0113345578999999999999999985

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.36  E-value=2.9e-06  Score=61.72  Aligned_cols=78  Identities=9%  Similarity=0.154  Sum_probs=50.1

Q ss_pred             CCcEEEEEEeCCC--CCcceEEEEeCCCcC----------CCCCC----ceeEe-----cCCeEEEEEEccCCCCCCeEE
Q psy3823          27 NEQVLVSCTVDAN--PQAQYFTWAFNNSGT----------APRPL----TSYSI-----QDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        27 G~~~~l~C~~~~~--p~~~~v~W~~~~~~~----------l~~~~----~~~~~-----~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      |++++|.|.....  .....+.|++.....          .....    ..+..     ......+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            7899999985322  222378898865320          00000    00110     112345899999999999999


Q ss_pred             EEEEEeCCCCCcccEEEEE
Q psy3823          86 LCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        86 ~C~a~~~~~~~~~~~~l~V  104 (365)
                      +|.+.+..+..+..+.|+|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776667777776

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.35  E-value=7.7e-07  Score=60.69  Aligned_cols=57  Identities=19%  Similarity=0.368  Sum_probs=40.6

Q ss_pred             EEEEEEeCCCC-CcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          30 VLVSCTVDANP-QAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        30 ~~l~C~~~~~p-~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      ++|.|.+.+.+ .+ .++|+ +...   .............+.|.|.++..+|.|.|+|.|.|
T Consensus        18 ~~l~C~~~~~~~~~-~~~W~-~~~~---~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPP-SISWY-DSNP---SFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSE-EEEEE-TEEE---EEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCe-EEEEE-ecCC---ceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            99999987777 66 99999 1111   11111122334556899999999999999999986

...

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.35  E-value=5e-06  Score=61.78  Aligned_cols=77  Identities=14%  Similarity=0.111  Sum_probs=48.4

Q ss_pred             eEEEEecCCcEEEEEEeCCCC-C--cceEEEEe---------------CCCcCCCCC-C----ceeEe--cCCeEEEEEE
Q psy3823          20 RIYGALRNEQVLVSCTVDANP-Q--AQYFTWAF---------------NNSGTAPRP-L----TSYSI--QDGSTSVARY   74 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p-~--~~~v~W~~---------------~~~~~l~~~-~----~~~~~--~~~~~~~l~i   74 (365)
                      ..+.+..|+.++|.|...+.. .  ...++|.+               ++.. .... .    +....  ......+|.|
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~-~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQP-YIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCce-ecccccCccCceEEeCCCCcCeeEEEE
Confidence            345678999999999944322 1  23999933               2222 1100 0    10111  1234458999


Q ss_pred             ccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          75 TPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        75 ~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+++.+|.|.|+|.+.|......
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~~~  107 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDIVG  107 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCcCC
Confidence            99999999999999998766433

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.35  E-value=4.3e-06  Score=60.52  Aligned_cols=77  Identities=19%  Similarity=0.280  Sum_probs=49.0

Q ss_pred             CcEEEEEEeCCCC--CcceEEEEeCCCcC--------------CCCCCceeEe---cCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          28 EQVLVSCTVDANP--QAQYFTWAFNNSGT--------------APRPLTSYSI---QDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        28 ~~~~l~C~~~~~p--~~~~v~W~~~~~~~--------------l~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      ++++|.|.....+  ....+.|+|.....              .......+..   .......|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5799999954433  22289999965320              0000011111   111345899999999999999999


Q ss_pred             EEe-CCCCCcccEEEEE
Q psy3823          89 ARN-EQGNQRTPCTFHV  104 (365)
Q Consensus        89 a~~-~~~~~~~~~~l~V  104 (365)
                      +.. ..|.....+.|+|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 5566667777776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.34  E-value=5.4e-06  Score=59.97  Aligned_cols=77  Identities=17%  Similarity=0.230  Sum_probs=50.8

Q ss_pred             ceEEEEEEEeeeC--CCceeEEEeCCCCCC--------------CCCCceeEeeCC---CEEEEEEcCCCcccCeEEEEE
Q psy3823         240 EQVLVSCTVDANP--QAQYFTWAFNNSDTA--------------PRPLTSYSIQDG---STSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       240 ~~~~l~C~~~~~p--~~~~~~W~~~~~~~~--------------~~~~~~~~~~~~---~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      ++++|.|.....+  ....+.|++......              ......+....+   ....|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999987654  222599998653200              000011111111   345799999999999999999


Q ss_pred             EEc-CCccceecEEEEE
Q psy3823         301 ARN-EQGSQRTPCTFHV  316 (365)
Q Consensus       301 a~n-~~g~~~~~~~l~v  316 (365)
                      +.+ +.|..+..+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            874 7788888888776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.33  E-value=5.7e-06  Score=61.19  Aligned_cols=71  Identities=10%  Similarity=0.134  Sum_probs=50.5

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCC-------------CCCCceeEee--CCCEEEEEEcCCCcccCeEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA-------------PRPLTSYSIQ--DGSTSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~-------------~~~~~~~~~~--~~~~s~l~i~~v~~~d~G~Y~C  299 (365)
                      .+.+|++++|.|.+.+.+... +.|++......             ....+..+..  ......|.|.+++.+|+|.|.|
T Consensus         9 ~~~~G~~v~L~C~~~~~~~~~-v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C   87 (109)
T cd04983           9 SVQEGENVTLNCNYSTSTFYY-LFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFC   87 (109)
T ss_pred             EEcCCCCEEEEEEECCCCccE-EEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEE
Confidence            388999999999998776666 99998532111             0112222222  2356789999999999999999


Q ss_pred             EEEcCCc
Q psy3823         300 WARNEQG  306 (365)
Q Consensus       300 ~a~n~~g  306 (365)
                      .+.+..+
T Consensus        88 ~~~~~~~   94 (109)
T cd04983          88 ALSESGG   94 (109)
T ss_pred             EEecCCC
Confidence            9997653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.32  E-value=1e-06  Score=63.04  Aligned_cols=73  Identities=21%  Similarity=0.350  Sum_probs=48.4

Q ss_pred             CCcEEEEEEEEecCCCCeeEEEeCCeEEee--------C-------C-CCc-eEEeeceEEEeeecCCCCeEEEEEEEcC
Q psy3823         135 GVDIYFDCHIQANPPYKKLIWTHNGITISN--------N-------A-SAG-RIITNQTLVLQSVTRHSGGLYACSAINS  197 (365)
Q Consensus       135 g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~--------~-------~-~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  197 (365)
                      |++|+|.|...... ...+.|+++......        .       . ..+ ....+.+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~VtL~c~~~~~~-~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPEN-LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCC-CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence            78999999877633 344999985432110        0       0 011 1223578999999999999999999987


Q ss_pred             CCCCCcccEEE
Q psy3823         198 QGEGGSTPFDL  208 (365)
Q Consensus       198 ~~~~~s~~~~l  208 (365)
                      .+......+.|
T Consensus        80 ~~~~~~~~~~l   90 (92)
T cd05741          80 NGVTENAKFFL   90 (92)
T ss_pred             CCcEEEEEEEE
Confidence            76554444444

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.31  E-value=5.6e-06  Score=61.15  Aligned_cols=79  Identities=10%  Similarity=0.188  Sum_probs=51.9

Q ss_pred             cCCcEEEEEEeCCCCC---------cceEEEEeCCCc-CCC----CCCc--------eeEe-----cCCeEEEEEEccCC
Q psy3823          26 RNEQVLVSCTVDANPQ---------AQYFTWAFNNSG-TAP----RPLT--------SYSI-----QDGSTSVARYTPTS   78 (365)
Q Consensus        26 ~G~~~~l~C~~~~~p~---------~~~v~W~~~~~~-~l~----~~~~--------~~~~-----~~~~~~~l~i~~~~   78 (365)
                      .|++++|+|.....+.         ...+.|+|.... ...    ....        .+..     .......|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            3899999999443331         238999996321 000    0000        0111     12344579999999


Q ss_pred             CCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          79 ELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      .+|+|.|.|.+.......+..++|.|
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V  106 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEV  106 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEE
Confidence            99999999999987666668888887

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.31  E-value=7.6e-06  Score=64.42  Aligned_cols=87  Identities=17%  Similarity=0.131  Sum_probs=61.1

Q ss_pred             CCceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCC----CC--------Cce-eEecCCeEEEEEEccCCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAP----RP--------LTS-YSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~----~~--------~~~-~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      .+...+.|.+|++++|.|.. .+.... .+.|+|.... +.    .+        .+. ....+...+.|.|.+++.+|+
T Consensus        20 s~~~~v~V~ege~VtLsCs~t~s~~~~-qVtWkK~~~~-IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDe   97 (189)
T PHA02987         20 SCFVKITVSEHVNVKISCNKTSSFNSI-LITWKKNNKT-IAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDN   97 (189)
T ss_pred             ceeEEEEEcCCCCEEEEEecCCCCccc-eEEEEEcCCC-EEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhC
Confidence            34567889999999999995 344556 9999997443 21    00        011 122333556899999999999


Q ss_pred             eEEEEEEEe-CCC-CCcccEEEEEE
Q psy3823          83 GTLLCWARN-EQG-NQRTPCTFHVV  105 (365)
Q Consensus        83 G~Y~C~a~~-~~~-~~~~~~~l~V~  105 (365)
                      |.|+|.... +.| ..+.+..|+|.
T Consensus        98 GcY~C~F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987         98 GCYTCIFNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             eEEEEEEEecCCCCCceeEEEEEEE
Confidence            999999864 555 56688888884

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.29  E-value=7.7e-06  Score=59.19  Aligned_cols=68  Identities=16%  Similarity=0.302  Sum_probs=46.4

Q ss_pred             EEecCCcEEEEEEeCCC--CCcceEEEEeCCCcC-CC-----------C-CCceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823          23 GALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGT-AP-----------R-PLTSYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~-l~-----------~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      .+.+|++++|.|...+.  ... .+.||+..... ..           . ..+.....+.....|+|.+++.+|+|.|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~-~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGN-YVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCC-CEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence            47899999999996543  345 79999864320 10           0 011122233355689999999999999999


Q ss_pred             EEEe
Q psy3823          88 WARN   91 (365)
Q Consensus        88 ~a~~   91 (365)
                      .+.+
T Consensus        81 ~~~~   84 (98)
T cd04984          81 QVWD   84 (98)
T ss_pred             EEcc
Confidence            9874

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.29  E-value=9e-06  Score=59.97  Aligned_cols=79  Identities=13%  Similarity=0.131  Sum_probs=51.5

Q ss_pred             cCceEEEEEEEeeeC------------CCceeEEEeCCCCCCC---------------CCCceeEee---CCCEEEEEEc
Q psy3823         238 RNEQVLVSCTVDANP------------QAQYFTWAFNNSDTAP---------------RPLTSYSIQ---DGSTSVARYT  287 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p------------~~~~~~W~~~~~~~~~---------------~~~~~~~~~---~~~~s~l~i~  287 (365)
                      .|++++|.|......            .+ .+.|++-......               ...+..+..   ......|.|.
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~-~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~   79 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSP-RIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEIT   79 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCC-EEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEe
Confidence            388999999997532            23 4999984211000               001111211   2245679999


Q ss_pred             CCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         288 PTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       288 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      +++.+|+|.|+|.+.+.....+..+.|.|.
T Consensus        80 nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          80 ELRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             ecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            999999999999999777766666666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.28  E-value=8.2e-06  Score=60.19  Aligned_cols=37  Identities=16%  Similarity=0.149  Sum_probs=30.0

Q ss_pred             eEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          68 STSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        68 ~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      ....|+|.+++.+|+|.|.|.+.+........+.|.|
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v  108 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQV  108 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEE
Confidence            4458999999999999999999966555556677766

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.27  E-value=6.9e-06  Score=61.49  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=50.1

Q ss_pred             CceEEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCcC-C------CC-----------CCceeEecCC--eEEEEEEc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSGT-A------PR-----------PLTSYSIQDG--STSVARYT   75 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~~-l------~~-----------~~~~~~~~~~--~~~~l~i~   75 (365)
                      .++.+.+.+|++++|.|...+  .+.. .+.||+..... .      ..           ..+.....+.  ....|.|.
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTT-YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCcccc-EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            356778899999999999655  5666 89999953210 0      00           0111111222  45689999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy3823          76 PTSELEYGTLLCWARN   91 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~   91 (365)
                      +++.+|+|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.23  E-value=8.9e-06  Score=60.26  Aligned_cols=68  Identities=10%  Similarity=0.108  Sum_probs=48.0

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC---------------C--CCceeEeeC-CCEEEEEEcCCCcccCeEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP---------------R--PLTSYSIQD-GSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~---------------~--~~~~~~~~~-~~~s~l~i~~v~~~d~G~Y  297 (365)
                      +.+|+.++|.|.+.+ +.+. +.|++......+               .  ..+.....+ ...+.|.|.+++.+|+|.|
T Consensus        10 v~~G~~v~l~C~~~~-~~~~-v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y   87 (110)
T cd05899          10 KGRGQSVTLRCSQTS-GHDN-MYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVY   87 (110)
T ss_pred             EcCCCcEEEEEEECC-CCCE-EEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEE
Confidence            889999999999987 5566 999986421111               0  111211222 2456799999999999999


Q ss_pred             EEEEEcCC
Q psy3823         298 LCWARNEQ  305 (365)
Q Consensus       298 ~C~a~n~~  305 (365)
                      .|.+.+..
T Consensus        88 ~Ca~~~~~   95 (110)
T cd05899          88 LCASSLGG   95 (110)
T ss_pred             EEEeeCCC
Confidence            99998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.22  E-value=1.1e-05  Score=58.15  Aligned_cols=35  Identities=11%  Similarity=0.210  Sum_probs=31.3

Q ss_pred             EEEEEcCCCcccCeEEEEEEEc-CCccceecEEEEE
Q psy3823         282 SVARYTPTSELEYGTLLCWARN-EQGSQRTPCTFHV  316 (365)
Q Consensus       282 s~l~i~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~v  316 (365)
                      ..|.|.+++.+|.|.|+|.+.+ +.|+.+..+.|.|
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            5699999999999999999999 7888888888876

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.22  E-value=1.3e-05  Score=57.77  Aligned_cols=37  Identities=14%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             eEEEEEEccCCCCCCeEEEEEEEe-CCCCCcccEEEEE
Q psy3823          68 STSVARYTPTSELEYGTLLCWARN-EQGNQRTPCTFHV  104 (365)
Q Consensus        68 ~~~~l~i~~~~~~d~G~Y~C~a~~-~~~~~~~~~~l~V  104 (365)
                      ...+|.|.+++.+|+|.|+|.+.+ +.|..+..+.|+|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            445899999999999999999998 6777668888887

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.21  E-value=7.2e-06  Score=59.17  Aligned_cols=78  Identities=13%  Similarity=0.115  Sum_probs=51.1

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCC----------------CCceeE-eeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPR----------------PLTSYS-IQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~----------------~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      |++++|.|..........+.|++........                ..+... ..+...+.|.|.+++.+|+|.|+|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            7889999997644333359999853211000                000011 11224567999999999999999987


Q ss_pred             E-cCCccceecEEEEE
Q psy3823         302 R-NEQGSQRTPCTFHV  316 (365)
Q Consensus       302 ~-n~~g~~~~~~~l~v  316 (365)
                      . .+.|..+..+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            6 67788777777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.21  E-value=1.9e-05  Score=58.34  Aligned_cols=80  Identities=10%  Similarity=0.159  Sum_probs=53.5

Q ss_pred             cCceEEEEEEEeeeCC---------CceeEEEeCCCCCCCC---------------CCceeEe---eCCCEEEEEEcCCC
Q psy3823         238 RNEQVLVSCTVDANPQ---------AQYFTWAFNNSDTAPR---------------PLTSYSI---QDGSTSVARYTPTS  290 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p~---------~~~~~W~~~~~~~~~~---------------~~~~~~~---~~~~~s~l~i~~v~  290 (365)
                      .|++++|.|.....+.         ...+.|++........               ..+..+.   .......|.|++++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            3889999999976442         1259999852111000               0111111   12344679999999


Q ss_pred             cccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         291 ELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       291 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      .+|+|.|.|.+.......+..+.|+|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            999999999999877777777777775

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.21  E-value=2e-05  Score=58.53  Aligned_cols=80  Identities=13%  Similarity=0.107  Sum_probs=50.6

Q ss_pred             eecCceEEEEEEEeeeCCC--c-eeEEEeCC---------------CCCCCCCC----ceeE--eeCCCEEEEEEcCCCc
Q psy3823         236 ALRNEQVLVSCTVDANPQA--Q-YFTWAFNN---------------SDTAPRPL----TSYS--IQDGSTSVARYTPTSE  291 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~--~-~~~W~~~~---------------~~~~~~~~----~~~~--~~~~~~s~l~i~~v~~  291 (365)
                      +..|+.+.|.|........  . .+.|.+..               ........    +..+  ........|.|.+++.
T Consensus        10 a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~   89 (116)
T cd05879          10 GTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDY   89 (116)
T ss_pred             EEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCc
Confidence            8899999999999654311  1 69995421               11100001    1111  1112345699999999


Q ss_pred             ccCeEEEEEEEcCCccceecEEEE
Q psy3823         292 LEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       292 ~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +|.|.|+|.+.|+.+.......+.
T Consensus        90 sD~G~Y~C~v~n~p~~~~~~~~~~  113 (116)
T cd05879          90 TDNGTFTCDVKNPPDIVGKSSQVT  113 (116)
T ss_pred             ccCEEEEEEEEcCCCcCCceeEEE
Confidence            999999999999887554444443

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.19  E-value=1.3e-05  Score=58.72  Aligned_cols=70  Identities=16%  Similarity=0.196  Sum_probs=49.0

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCC----------------CCCceeEeeCC--CEEEEEEcCCCcccCeE
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAP----------------RPLTSYSIQDG--STSVARYTPTSELEYGT  296 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~----------------~~~~~~~~~~~--~~s~l~i~~v~~~d~G~  296 (365)
                      +..|+.++|.|.+... +... +.|++.......                ...+.....+.  ....|.|.+++.+|+|.
T Consensus         3 v~~G~~v~L~C~~~~~~~~~~-v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           3 VSEGESVTLSCTYSGSFSSYY-IFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             ecCCCCEEEEEEEeCCcCcce-EEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            6789999999999875 4554 999985431100                01111222222  46679999999999999


Q ss_pred             EEEEEEcCCc
Q psy3823         297 LLCWARNEQG  306 (365)
Q Consensus       297 Y~C~a~n~~g  306 (365)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.17  E-value=2e-05  Score=56.48  Aligned_cols=70  Identities=11%  Similarity=0.230  Sum_probs=49.3

Q ss_pred             ceecCCcEEEEEEEEecCCCCe--eEEEeCCeEEeeCCCCc----eEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         131 VLNEGVDIYFDCHIQANPPYKK--LIWTHNGITISNNASAG----RIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~~--i~W~~~~~~l~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .+.+|+.++|.|.+.+..+...  |.||+++..+.......    ......++.+.....+|...|+|+|.+..+.
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            4689999999999997554444  69999999886422111    1222456777766667777999999977653

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.17  E-value=1.5e-05  Score=58.65  Aligned_cols=68  Identities=13%  Similarity=0.227  Sum_probs=46.9

Q ss_pred             eecCceEEEEEEEeeeC-CCceeEEEeCCCCCCC-----------C--CCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANP-QAQYFTWAFNNSDTAP-----------R--PLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p-~~~~~~W~~~~~~~~~-----------~--~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      +.+|++++|.|.+.+.. ... +.|++.......           .  ..+.....+.....|.|++++.+|+|.|.|.+
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~-~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~   90 (106)
T cd04980          12 VSPGESATISCKASQSVSSNY-LAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQ   90 (106)
T ss_pred             ECCCCCEEEEEEECCCCCCCc-EEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEE
Confidence            88999999999997654 455 999975321100           0  01122223345567999999999999999999


Q ss_pred             EcC
Q psy3823         302 RNE  304 (365)
Q Consensus       302 ~n~  304 (365)
                      .+.
T Consensus        91 ~~~   93 (106)
T cd04980          91 YGT   93 (106)
T ss_pred             eCC
Confidence            764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.17  E-value=2e-05  Score=54.85  Aligned_cols=65  Identities=14%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             EEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEe--cCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          30 VLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSI--QDG---STSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        30 ~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~--~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      ++|.|. .+++|.. .++|+|++.. +.........  .++   ..+.|.+.....++...|+|.|.+.....
T Consensus         2 ~~LtC~a~gf~P~~-~itW~kng~~-l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~   72 (83)
T cd05884           2 MQLTCKTSGSKPAA-DIRWFKNDKE-IKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA   72 (83)
T ss_pred             EEEEEEeCCccCCC-EEEEEECCEE-CcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence            689999 5568886 9999999998 6554322211  222   34567777777888999999999876654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.17  E-value=1.6e-05  Score=56.76  Aligned_cols=75  Identities=17%  Similarity=0.350  Sum_probs=48.3

Q ss_pred             CcEEEEEEEEecCCCCeeEEEeCC----eEEeeCC-----------CCceEEe-----eceEEEeeecCCCCeEEEEEEE
Q psy3823         136 VDIYFDCHIQANPPYKKLIWTHNG----ITISNNA-----------SAGRIIT-----NQTLVLQSVTRHSGGLYACSAI  195 (365)
Q Consensus       136 ~~v~l~C~~~~~p~~~~i~W~~~~----~~l~~~~-----------~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~  195 (365)
                      ++|+|.|.....+....++|.+..    ..+....           ..+....     +.+|.|.+++.+|+|.|.|++.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            368999998754555568998731    1221100           1122221     5689999999999999999987


Q ss_pred             cCCCCCCcccEEEEE
Q psy3823         196 NSQGEGGSTPFDLNI  210 (365)
Q Consensus       196 ~~~~~~~s~~~~l~v  210 (365)
                      .......+.++.|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence            654334436777766

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.16  E-value=0.00041  Score=62.29  Aligned_cols=162  Identities=15%  Similarity=0.179  Sum_probs=93.9

Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCC-CC--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe
Q psy3823          70 SVARYTPTSELEYGTLLCWARNEQG-NQ--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA  146 (365)
Q Consensus        70 ~~l~i~~~~~~d~G~Y~C~a~~~~~-~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  146 (365)
                      -.|.|.+++..++|.|+=.+.+... ..  ...++|.+         +.+|.+.+.+.      .+.+|+.-.-.|.+..
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~---------yr~PsVsV~p~------PVL~Ge~YkAtC~vA~  353 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMS---------YKRPNITVIGD------PVLLGNPYAAYCKVNK  353 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEE---------ecCCCccccCC------ccccCCCceEEEEeee
Confidence            3599999999999999855443222 21  25566666         67887777543      4669999999999985


Q ss_pred             c-C-CCCeeEEEeCCeEEeeCCC--------CceEEeeceEEEeeecCCC--CeEEEEEEEcC-CCCCC---cccEEEEE
Q psy3823         147 N-P-PYKKLIWTHNGITISNNAS--------AGRIITNQTLVLQSVTRHS--GGLYACSAINS-QGEGG---STPFDLNI  210 (365)
Q Consensus       147 ~-p-~~~~i~W~~~~~~l~~~~~--------~~~~~~~~~l~i~~~~~~d--~G~Y~C~~~~~-~~~~~---s~~~~l~v  210 (365)
                      + | ...+++|+.||.++.....        .+.....++|.+......|  .-..+|.+.-. .+...   +....-.|
T Consensus       354 YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~V  433 (566)
T PHA03269        354 YYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDV  433 (566)
T ss_pred             ecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCcc
Confidence            4 3 3445889999988863111        1111222334442211111  34569998633 22222   12222333


Q ss_pred             eeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCc-eeEEEeCCCC
Q psy3823         211 NKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSD  265 (365)
Q Consensus       211 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~  265 (365)
                      .          ..|.+.      .....|+-   .|.+.--|... .+.|+.++..
T Consensus       434 Y----------~~PtIS------m~FedG~A---VCtA~CVP~~~V~l~WlVgD~p  470 (566)
T PHA03269        434 Y----------PFPNVS------IEIIDGHI---VCLAKCVPRGVVHFNWWINDIP  470 (566)
T ss_pred             c----------cCCeEE------EEEeCCEE---EEecccccCCCceEEEEecCCC
Confidence            3          444433      21334443   38887776643 6999987764

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.15  E-value=1.1e-05  Score=59.91  Aligned_cols=73  Identities=12%  Similarity=0.127  Sum_probs=49.9

Q ss_pred             ceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCc----CCC--CCC------------ce--eEecCCeEEEEEEccC
Q psy3823          19 QRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSG----TAP--RPL------------TS--YSIQDGSTSVARYTPT   77 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~----~l~--~~~------------~~--~~~~~~~~~~l~i~~~   77 (365)
                      +..+.+.+|+++.|.|... ..... .+.|++....    .+.  ...            ..  .........+|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQS-SVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGS-EEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcc-eEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            5678899999999999955 23444 9999995441    011  000            00  1112234568999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy3823          78 SELEYGTLLCWARNE   92 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~   92 (365)
                      +.+|+|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SGGGEEEEEEEEEES
T ss_pred             CcCcCEEEEEEEEEC
Confidence            999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.15  E-value=1.7e-05  Score=57.50  Aligned_cols=37  Identities=14%  Similarity=0.190  Sum_probs=30.8

Q ss_pred             eEEEEEEccCCCCCCeEEEEEEEe-CCCCCcccEEEEE
Q psy3823          68 STSVARYTPTSELEYGTLLCWARN-EQGNQRTPCTFHV  104 (365)
Q Consensus        68 ~~~~l~i~~~~~~d~G~Y~C~a~~-~~~~~~~~~~l~V  104 (365)
                      ....|.|.+++.+|+|.|.|.+.+ +.|..+..+.|+|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            455799999999999999999986 6666667777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.14  E-value=9.2e-06  Score=58.56  Aligned_cols=79  Identities=14%  Similarity=0.171  Sum_probs=50.6

Q ss_pred             ecCceEEEEEEEee-eCCCceeEEEeCCCCCCCCC------------Cc--eeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         237 LRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRP------------LT--SYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       237 ~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~------------~~--~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      ..|++++|.|.... .... .+.|++.........            ..  .++..+.....|.|.+++.+|+|.|.|.+
T Consensus         2 ~~G~sVtL~c~~~~~~~~~-~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v   80 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIE-SITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI   80 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEE-EEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence            36999999998754 2233 599997532111000            01  12223344466999999999999999999


Q ss_pred             EcCCccc-eecEEEEE
Q psy3823         302 RNEQGSQ-RTPCTFHV  316 (365)
Q Consensus       302 ~n~~g~~-~~~~~l~v  316 (365)
                      .+..|.. +..+.|.|
T Consensus        81 ~~~~~~~~~~~f~L~v   96 (97)
T cd05775          81 NTKNGVTITKEFTLHI   96 (97)
T ss_pred             EcCCCCeEEEEEEEEe
Confidence            9887654 44444443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.13  E-value=2e-05  Score=54.09  Aligned_cols=74  Identities=9%  Similarity=0.108  Sum_probs=52.0

Q ss_pred             EEecCCcEEEEEEeCC--CCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823          23 GALRNEQVLVSCTVDA--NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPC  100 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~  100 (365)
                      .+..|++++|.|...+  .|.+ .++|...+.. ..+.      ......+|.+.+++..|+|.++|.+.......+..+
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~-~i~w~~P~n~-~~~~------~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~   81 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAF-KVEWRGPGNK-SKQI------LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL   81 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCc-cEEEeCCCCc-ccee------ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence            5788999999999543  5566 9999987765 2211      112223799999999999999999986643333445


Q ss_pred             EEEE
Q psy3823         101 TFHV  104 (365)
Q Consensus       101 ~l~V  104 (365)
                      .+.|
T Consensus        82 ~V~V   85 (88)
T cd07694          82 DIKV   85 (88)
T ss_pred             eEEE
Confidence            5554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.13  E-value=1.6e-05  Score=56.78  Aligned_cols=77  Identities=13%  Similarity=0.134  Sum_probs=50.4

Q ss_pred             ceEEEEEEEeeeCCCceeEEEeCCCCCCCCC----------------CceeE-eeCCCEEEEEEcCCCcccCeEEEEEE-
Q psy3823         240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRP----------------LTSYS-IQDGSTSVARYTPTSELEYGTLLCWA-  301 (365)
Q Consensus       240 ~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~----------------~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a-  301 (365)
                      ++++|.|.....+....+.|.+.........                .+..+ ........|.|.+++.+|+|.|+|.+ 
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            3689999987543333699987532110000                01111 11223456999999999999999996 


Q ss_pred             EcCCccceecEEEEE
Q psy3823         302 RNEQGSQRTPCTFHV  316 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v  316 (365)
                      ..+.|+.+.+..|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence            578899988888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.12  E-value=1.2e-05  Score=57.82  Aligned_cols=70  Identities=19%  Similarity=0.238  Sum_probs=48.6

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .|+.+.|.|.+.|+ |.+..+.|+++|........  ......++.   .+.|.+......+.+.|+|.|.+....
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            57899999999997 54335999999875543332  122233444   345667666667999999999987654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.12  E-value=2.3e-05  Score=58.61  Aligned_cols=69  Identities=17%  Similarity=0.157  Sum_probs=48.5

Q ss_pred             eeecCceEEEEEEEee--eCCCceeEEEeCCCCCCC------------------CCCceeEeeCC--CEEEEEEcCCCcc
Q psy3823         235 GALRNEQVLVSCTVDA--NPQAQYFTWAFNNSDTAP------------------RPLTSYSIQDG--STSVARYTPTSEL  292 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~--~p~~~~~~W~~~~~~~~~------------------~~~~~~~~~~~--~~s~l~i~~v~~~  292 (365)
                      .+.+|+.++|.|.+.+  .+.+. +.|++.......                  ...+.....+.  ....|.|.+++.+
T Consensus         9 ~~~~G~~v~l~C~~~~~~~~~~~-v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   87 (116)
T cd04982           9 TREESKSVTISCKVSGIDFSTTY-IHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKE   87 (116)
T ss_pred             EeCCCCCEEEEEEEeCCCccccE-EEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHH
Confidence            3788999999999977  56666 999985321110                  01222223333  5678999999999


Q ss_pred             cCeEEEEEEEcC
Q psy3823         293 EYGTLLCWARNE  304 (365)
Q Consensus       293 d~G~Y~C~a~n~  304 (365)
                      |+|.|.|.+...
T Consensus        88 Dsg~Y~C~~~~~   99 (116)
T cd04982          88 DSATYYCAYWES   99 (116)
T ss_pred             HCEEEEEEEecC
Confidence            999999999753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.11  E-value=1e-05  Score=58.17  Aligned_cols=70  Identities=21%  Similarity=0.250  Sum_probs=49.7

Q ss_pred             ecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCCCCc---eeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          25 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPRPLT---SYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        25 ~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~~~~---~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ..|+.++|.|.+.+. |....++|++++.. +.....   .....++   ..+.|.+.....+|.|.|+|.|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~-~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKE-LTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEE-CCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            368999999996665 65448999999988 655442   1122333   2345777777777999999999987654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.11  E-value=2.4e-05  Score=56.52  Aligned_cols=68  Identities=18%  Similarity=0.303  Sum_probs=47.3

Q ss_pred             eecCceEEEEEEEeee--CCCceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         236 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      +.+|++++|.|...+.  .... +.|++........             ..+.....++....|.|.+++.+|+|.|.|.
T Consensus         3 v~~G~~v~l~C~~~~~~~~~~~-i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           3 VSPGETVTITCTGSSGNISGNY-VNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             cCCCCCEEEEEEEcCCCcCCCC-EEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            6789999999998764  3455 9998754321110             1122223344567799999999999999999


Q ss_pred             EEcC
Q psy3823         301 ARNE  304 (365)
Q Consensus       301 a~n~  304 (365)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            9754

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.10  E-value=3.4e-05  Score=56.80  Aligned_cols=73  Identities=15%  Similarity=0.171  Sum_probs=47.2

Q ss_pred             EEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeE-ecCC----eEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          23 GALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYS-IQDG----STSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        23 ~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~-~~~~----~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .+..|+.++|.|. .+.+|....++|+||+.. +........ ..++    ..+.|.+.....++...|+|.+.+.....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~-~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~~   95 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNE-LSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQA   95 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEE-CcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCCC
Confidence            3456889999999 555676459999999998 654333222 1222    23446666544443446999999876544

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.10  E-value=3.1e-05  Score=55.98  Aligned_cols=70  Identities=11%  Similarity=0.038  Sum_probs=47.6

Q ss_pred             EEEecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCC-------------CCCceeE--ecCCeEEEEEEccCCCCCCeEE
Q psy3823          22 YGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAP-------------RPLTSYS--IQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~-------------~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +.+.+|++++|.|.... .+.. .+.|+|.... ..             .......  ........|.|.+++.+|+|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~-~~~W~r~~~~-~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y   79 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSY-EKYWCKWGSA-GCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWY   79 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCc-EeEeECCCCC-CCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEE
Confidence            46789999999998543 3455 8999997643 10             0011111  1223456899999999999999


Q ss_pred             EEEEEeCC
Q psy3823          86 LCWARNEQ   93 (365)
Q Consensus        86 ~C~a~~~~   93 (365)
                      .|.+....
T Consensus        80 ~C~~~~~~   87 (98)
T cd05716          80 WCGVGDDG   87 (98)
T ss_pred             EEEcccCC
Confidence            99887543

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.08  E-value=5.5e-05  Score=52.60  Aligned_cols=63  Identities=11%  Similarity=0.236  Sum_probs=42.7

Q ss_pred             EEEEEEEEec-CCCCeeEEEeCCeEEeeCCC------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         138 IYFDCHIQAN-PPYKKLIWTHNGITISNNAS------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       138 v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      +.|.|.+.+. |.+ +|+|++++..+.....      .+.....+.|.+.....++.+.|+|++.|.....
T Consensus         2 ~~L~C~~~~~~P~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAA-TIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCC-eEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            6899999865 665 5999999988753210      0111123345666666677889999999887653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.06  E-value=6e-05  Score=52.41  Aligned_cols=63  Identities=14%  Similarity=0.250  Sum_probs=44.0

Q ss_pred             EEEEEEEEecCCCCeeEEEeCCeEEeeCCC-------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         138 IYFDCHIQANPPYKKLIWTHNGITISNNAS-------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       138 v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      ++|.|.+.|..|+..|+|++||..+.....       .+.......|.+.....++...|+|++.+....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999997544466999999998753221       111222446777766677888999999987654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.06  E-value=4.4e-05  Score=56.15  Aligned_cols=67  Identities=15%  Similarity=0.141  Sum_probs=44.5

Q ss_pred             EEecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCC---------------------CCcee--EecCCeEEEEEEccCC
Q psy3823          23 GALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPR---------------------PLTSY--SIQDGSTSVARYTPTS   78 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~---------------------~~~~~--~~~~~~~~~l~i~~~~   78 (365)
                      .+.+|++++|.|..... ... .+.|||-.....+.                     .....  .........|+|.+++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~-~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENT-RIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCC-eEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            57899999999996443 334 89999864320000                     00111  1122344579999999


Q ss_pred             CCCCeEEEEEEE
Q psy3823          79 ELEYGTLLCWAR   90 (365)
Q Consensus        79 ~~d~G~Y~C~a~   90 (365)
                      .+|+|.|.|...
T Consensus        81 ~~Dsg~YyCa~~   92 (107)
T cd07700          81 PEDSGTYFCMTV   92 (107)
T ss_pred             HHHCEEEEEeEc
Confidence            999999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.05  E-value=3.7e-05  Score=55.72  Aligned_cols=76  Identities=9%  Similarity=0.103  Sum_probs=48.9

Q ss_pred             eEEEEEEEeeeCC--CceeEEEeCCCCCCC---------------C--CCceeEee--CCCEEEEEEcCCCcccCeEEEE
Q psy3823         241 QVLVSCTVDANPQ--AQYFTWAFNNSDTAP---------------R--PLTSYSIQ--DGSTSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       241 ~~~l~C~~~~~p~--~~~~~W~~~~~~~~~---------------~--~~~~~~~~--~~~~s~l~i~~v~~~d~G~Y~C  299 (365)
                      +++|.|.....+.  ...+.|++.......               .  ..+..+..  ......|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            5889998864431  115999984321100               0  01122221  2234569999999999999999


Q ss_pred             EEEc-CCccceecEEEEE
Q psy3823         300 WARN-EQGSQRTPCTFHV  316 (365)
Q Consensus       300 ~a~n-~~g~~~~~~~l~v  316 (365)
                      .+.+ +.|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9997 7777777777766

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.04  E-value=8e-05  Score=51.86  Aligned_cols=63  Identities=11%  Similarity=0.278  Sum_probs=43.3

Q ss_pred             EEEEEEEEec-CCCCeeEEEeCCeEEeeCCC------C-ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         138 IYFDCHIQAN-PPYKKLIWTHNGITISNNAS------A-GRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       138 v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~~------~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      ++|.|.+.+. |.+ .|+|++||..+.....      . +.......|.+.....++...|+|++.+.....
T Consensus         2 ~~LtC~a~g~~P~~-~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAA-NIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCC-EeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            6899999975 655 6999999988754221      1 111123456666666788899999999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.03  E-value=2.9e-05  Score=57.00  Aligned_cols=37  Identities=11%  Similarity=0.083  Sum_probs=31.1

Q ss_pred             eEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          68 STSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        68 ~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      ...+|.|.+++.+|+|.|.|.+.......+..+.|.|
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V  106 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEV  106 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEE
Confidence            4568999999999999999999986655557888887

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.03  E-value=6.7e-05  Score=55.93  Aligned_cols=73  Identities=16%  Similarity=0.219  Sum_probs=46.5

Q ss_pred             eeecCceEEEEEEEeeeCC-C--ceeEEEeC---CCCC---------C--CCCCce--eE----eeCCCEEEEEEcCCCc
Q psy3823         235 GALRNEQVLVSCTVDANPQ-A--QYFTWAFN---NSDT---------A--PRPLTS--YS----IQDGSTSVARYTPTSE  291 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~-~--~~~~W~~~---~~~~---------~--~~~~~~--~~----~~~~~~s~l~i~~v~~  291 (365)
                      .+..|+.++|.|.....++ .  ..+.|++.   +...         .  .....+  +.    ........|.|.+++.
T Consensus         9 ~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~   88 (115)
T cd05880           9 EAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQP   88 (115)
T ss_pred             EEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCCh
Confidence            3889999999999865432 1  14999752   1110         0  000010  11    1112345699999999


Q ss_pred             ccCeEEEEEEEcCCcc
Q psy3823         292 LEYGTLLCWARNEQGS  307 (365)
Q Consensus       292 ~d~G~Y~C~a~n~~g~  307 (365)
                      +|+|.|.|.+.|..+.
T Consensus        89 ~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          89 TDNGTYTCQVKNPPDV  104 (115)
T ss_pred             hhCEEEEEEEEeCCCC
Confidence            9999999999987764

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.99  E-value=5.5e-05  Score=54.75  Aligned_cols=68  Identities=18%  Similarity=0.345  Sum_probs=45.5

Q ss_pred             eecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC--------CceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         132 LNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS--------AGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      ...++.++|.|.+.| +|....++|++||..+.....        .+.......|.+.....++...|+|.+.+...
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            446788999999997 566777999999998742211        11111123455555555567899999998754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.98  E-value=6.6e-05  Score=53.62  Aligned_cols=70  Identities=13%  Similarity=0.097  Sum_probs=47.4

Q ss_pred             ecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCc---eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          25 LRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLT---SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        25 ~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ..|+.++|.|. .+..|....++|++++.. +.....   .....+++.+......+..++...|+|.+.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~-~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQE-ETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCee-cCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence            36899999999 555787779999999988 655421   12223444443333444556778999999987654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.97  E-value=7.2e-05  Score=59.01  Aligned_cols=81  Identities=17%  Similarity=0.309  Sum_probs=56.3

Q ss_pred             cceecCCcEEEEEEEE-ecCCCCeeEEEeCCeEEee----------CCCCceEE-----eeceEEEeeecCCCCeEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQ-ANPPYKKLIWTHNGITISN----------NASAGRII-----TNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~~~~l~~----------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+.+|++|+|.|... +...+. +.|.+....+..          .-..+...     ...+|.|.+++.+|+|.|.|.
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~q-VtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSIL-ITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccce-EEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            4678999999999985 433444 999985332211          00112222     356899999999999999999


Q ss_pred             EEc-CCCCCCcccEEEEEe
Q psy3823         194 AIN-SQGEGGSTPFDLNIN  211 (365)
Q Consensus       194 ~~~-~~~~~~s~~~~l~v~  211 (365)
                      +.- +.|...+....|+|.
T Consensus       104 F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EEecCCCCCceeEEEEEEE
Confidence            864 455355577888887

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.96  E-value=0.0001  Score=55.05  Aligned_cols=72  Identities=15%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             eecCceEEEEEEEeeeCC--C-ceeEEEeCCCCCCC---------------CCCce----eEe--eCCCEEEEEEcCCCc
Q psy3823         236 ALRNEQVLVSCTVDANPQ--A-QYFTWAFNNSDTAP---------------RPLTS----YSI--QDGSTSVARYTPTSE  291 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~--~-~~~~W~~~~~~~~~---------------~~~~~----~~~--~~~~~s~l~i~~v~~  291 (365)
                      +..|+.++|.|.......  . ..+.|++.......               ....+    .+.  .......|.|.+++.
T Consensus        10 v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   89 (116)
T cd05715          10 AVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQF   89 (116)
T ss_pred             EEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCc
Confidence            789999999999864321  1 14999864221000               00011    111  112235699999999


Q ss_pred             ccCeEEEEEEEcCCcc
Q psy3823         292 LEYGTLLCWARNEQGS  307 (365)
Q Consensus       292 ~d~G~Y~C~a~n~~g~  307 (365)
                      +|+|.|.|.+.|..+.
T Consensus        90 ~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          90 TDNGTYTCDVKNPPDI  105 (116)
T ss_pred             ccCEEEEEEEEeCCCC
Confidence            9999999999987664

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.96  E-value=8.7e-05  Score=54.65  Aligned_cols=72  Identities=17%  Similarity=0.199  Sum_probs=44.1

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCC-C---EEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDG-S---TSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~-~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      ...|+.++|.|.+.++ |....+.|++||..............++ +   .+.|.+.....+....|+|.+.+....
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~   94 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQ   94 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCC
Confidence            4568889999999885 5444599999987644322222222232 2   344656543332234599999986533

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.94  E-value=7.1e-05  Score=55.21  Aligned_cols=36  Identities=8%  Similarity=0.124  Sum_probs=31.7

Q ss_pred             EEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          69 TSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        69 ~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      ..+|.|.+++.+|+|.|+|.+..........+.|.|
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V  113 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV  113 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence            458999999999999999999988777778888887

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.93  E-value=0.0034  Score=55.47  Aligned_cols=165  Identities=13%  Similarity=0.155  Sum_probs=93.9

Q ss_pred             eEEEEEEccCCCCCCeEEEEEEEeCCCCCc--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE
Q psy3823          68 STSVARYTPTSELEYGTLLCWARNEQGNQR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ  145 (365)
Q Consensus        68 ~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~  145 (365)
                      ....|.|.++...|+|.|+-...+.....-  ..+.+.+.        +.+|.+.+.+.      .+.+|+.-.-.|.+.
T Consensus       205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~--------~RPPsVsV~a~------PVL~Ge~YkAtC~vA  270 (490)
T PHA03271        205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC--------QRPASVDVLAP------PVLSGENYKASCIVR  270 (490)
T ss_pred             ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEE--------ecCCCccccCC------ccccCCCceEEEEee
Confidence            344688999999999977554443322221  55556663        55777777553      466999999999998


Q ss_pred             ec-C-CCCeeEEEeCCeEEeeCCCCceEE----------eeceEEEeeecCCCCeEEEEEEEcCCC-CCC--cccEEEEE
Q psy3823         146 AN-P-PYKKLIWTHNGITISNNASAGRII----------TNQTLVLQSVTRHSGGLYACSAINSQG-EGG--STPFDLNI  210 (365)
Q Consensus       146 ~~-p-~~~~i~W~~~~~~l~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~--s~~~~l~v  210 (365)
                      .+ | ...+++|+.||.++..........          .-++|.+.+...+..-..+|.+.-..+ ...  ++...-.|
T Consensus       271 nYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~V  350 (490)
T PHA03271        271 HFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTV  350 (490)
T ss_pred             eecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCcc
Confidence            54 3 344588999998875433221111          122343433322333478999864333 111  12222223


Q ss_pred             eeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCC
Q psy3823         211 NKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD  265 (365)
Q Consensus       211 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~  265 (365)
                      .          .+|.+.      .....|+-+   |.+.--|....+.|+.++..
T Consensus       351 Y----------~~P~IS------v~FedG~AV---CtA~CVP~gV~lrWlVgD~p  386 (490)
T PHA03271        351 Y----------HHPRIS------LAFKDGYAI---CTIECVPSGITVRWLVHDEP  386 (490)
T ss_pred             c----------cCCeEE------EEEeCCEEE---EeccccCCCcEEEEEecCCC
Confidence            2          333332      223344433   88876665447999987653

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.93  E-value=7.7e-05  Score=55.77  Aligned_cols=73  Identities=10%  Similarity=0.074  Sum_probs=48.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCC-CCcceEEEEeCCCcC-C----------CCC--CceeEe--cCCeEEEEEEccCCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGT-A----------PRP--LTSYSI--QDGSTSVARYTPTSELEY   82 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~-l----------~~~--~~~~~~--~~~~~~~l~i~~~~~~d~   82 (365)
                      +..+.+.+|++++|.|..... ... .+.|||..... +          ...  .+....  .......|.|.+++.+|+
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~-~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   84 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNY-YIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS   84 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCce-EEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence            456778999999999995432 344 89999853210 0          000  111111  223456899999999999


Q ss_pred             eEEEEEEEeC
Q psy3823          83 GTLLCWARNE   92 (365)
Q Consensus        83 G~Y~C~a~~~   92 (365)
                      |.|.|.+...
T Consensus        85 g~Y~C~~~~~   94 (116)
T cd07706          85 AKYFCALSTL   94 (116)
T ss_pred             EEEEEEEECC
Confidence            9999998853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.92  E-value=0.00011  Score=52.46  Aligned_cols=68  Identities=13%  Similarity=0.168  Sum_probs=43.3

Q ss_pred             CceEEEEEEEeee-CCCceeEEEeCCCCCCCCC--CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         239 NEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRP--LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       239 g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      ++.++|.|.+.|+ |++..+.|.++|.......  .......++..+......+...+...|+|.+.+..-
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            6789999999996 5543699999985221111  122223445544434444555688999999987654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.91  E-value=0.0022  Score=57.57  Aligned_cols=163  Identities=13%  Similarity=0.149  Sum_probs=93.3

Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-C
Q psy3823          70 SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-P  148 (365)
Q Consensus        70 ~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p  148 (365)
                      -.|.|..++..++|.|+=...+..+.......++|.-       +.+|.+.+.+.      .+.+|+...-.|.+..+ |
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~-------yr~Psvsv~~~------PvL~Ge~y~A~C~aa~YYP  264 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST-------YNAPLVDLSVH------PSLKGENYRAVCVVASYFP  264 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE-------ecCCcccccCC------ccccCCCceEEEEeeeecC
Confidence            3599999999999999855445444333333444321       66888777553      46699999999999854 3


Q ss_pred             -CCCeeEEEeCCeEEeeCCCCc--eE-------EeeceEEEeeec-CCCCeEEEEEEEcC-CCCCCc---ccEEEEEeee
Q psy3823         149 -PYKKLIWTHNGITISNNASAG--RI-------ITNQTLVLQSVT-RHSGGLYACSAINS-QGEGGS---TPFDLNINKM  213 (365)
Q Consensus       149 -~~~~i~W~~~~~~l~~~~~~~--~~-------~~~~~l~i~~~~-~~d~G~Y~C~~~~~-~~~~~s---~~~~l~v~~~  213 (365)
                       ...++.|+.||.++.......  ..       ...++|.+.... ....-..+|.+.-. .....+   +...-.|.  
T Consensus       265 p~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy--  342 (486)
T PHA03273        265 HSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVF--  342 (486)
T ss_pred             CCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccc--
Confidence             344588999999887212111  11       112334333321 23335789998533 222221   22223333  


Q ss_pred             eecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC-CceeEEEeCCC
Q psy3823         214 VNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ-AQYFTWAFNNS  264 (365)
Q Consensus       214 ~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~~W~~~~~  264 (365)
                              .+|.+.      .....|+-   .|.+.--|. ...+.|+.++.
T Consensus       343 --------~~P~Is------~~F~~G~A---VCtA~CVP~egV~l~W~v~D~  377 (486)
T PHA03273        343 --------VAPTVS------VTVEDGDA---VCTAKCVPSTGVFVSWSVNDH  377 (486)
T ss_pred             --------cCCeEE------EEEeCCEE---EEecccccCCCeeEEEEccCC
Confidence                    444433      21333433   388877776 23599998763

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.89  E-value=0.00026  Score=53.18  Aligned_cols=74  Identities=7%  Similarity=-0.012  Sum_probs=47.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCC-----CCcceEEEEeCCCcC----C---CC-CC--------ceeE--ecCCeEEEEEEc
Q psy3823          19 QRIYGALRNEQVLVSCTVDAN-----PQAQYFTWAFNNSGT----A---PR-PL--------TSYS--IQDGSTSVARYT   75 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~-----p~~~~v~W~~~~~~~----l---~~-~~--------~~~~--~~~~~~~~l~i~   75 (365)
                      +..+.+.+|+.++|.|.....     +....+.||+.....    +   .. ..        +...  ........|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            455788999999999974311     112279999865320    0   00 00        0011  112344579999


Q ss_pred             cCCCCCCeEEEEEEEeC
Q psy3823          76 PTSELEYGTLLCWARNE   92 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~   92 (365)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999988653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.88  E-value=0.00014  Score=49.52  Aligned_cols=63  Identities=22%  Similarity=0.444  Sum_probs=41.2

Q ss_pred             cEEEEEEEEec-CCCCeeEEEeCCeEEeeCC--------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         137 DIYFDCHIQAN-PPYKKLIWTHNGITISNNA--------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       137 ~v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      .++|.|.+.|. |+..+++|++||.++....        ..+.......|.+.....++...|+|++.+...
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~   72 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL   72 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence            36899999984 6656799999998743211        111111234455655566788899999987653

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.87  E-value=0.00017  Score=52.12  Aligned_cols=69  Identities=10%  Similarity=0.060  Sum_probs=47.1

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCC------------CCCCceeE--eeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTA------------PRPLTSYS--IQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~------------~~~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      +.+|++++|.|..... .... +.|++......            ....+..+  ........|.|.+++.+|+|.|.|.
T Consensus         4 ~~~G~~vtl~C~~~~~~~~~~-~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           4 GELGGSVTIPCPYPPKNRSYE-KYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEeCCeEEEEeeCCCCCCCcE-eEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            7889999999998653 3444 99998643210            01112222  2224567899999999999999999


Q ss_pred             EEcCC
Q psy3823         301 ARNEQ  305 (365)
Q Consensus       301 a~n~~  305 (365)
                      +....
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            98754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.85  E-value=0.00014  Score=53.45  Aligned_cols=68  Identities=15%  Similarity=0.160  Sum_probs=45.4

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC---------------------CCceeE--eeCCCEEEEEEcCCCcc
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR---------------------PLTSYS--IQDGSTSVARYTPTSEL  292 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~---------------------~~~~~~--~~~~~~s~l~i~~v~~~  292 (365)
                      +.+|+.++|.|...+......+.|++........                     ..+...  ..+.....|.|.+++.+
T Consensus         3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   82 (107)
T cd07700           3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPE   82 (107)
T ss_pred             EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHH
Confidence            7789999999998754322249999854321000                     011211  22344567999999999


Q ss_pred             cCeEEEEEEEc
Q psy3823         293 EYGTLLCWARN  303 (365)
Q Consensus       293 d~G~Y~C~a~n  303 (365)
                      |+|.|.|...+
T Consensus        83 Dsg~YyCa~~~   93 (107)
T cd07700          83 DSGTYFCMTVG   93 (107)
T ss_pred             HCEEEEEeEcC
Confidence            99999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.84  E-value=0.00031  Score=52.46  Aligned_cols=68  Identities=9%  Similarity=0.087  Sum_probs=46.2

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCC-----------C-C-CCceeEe--eCCCEEEEEEcCCCcccCeEEEE
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTA-----------P-R-PLTSYSI--QDGSTSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~-----------~-~-~~~~~~~--~~~~~s~l~i~~v~~~d~G~Y~C  299 (365)
                      +..|+.++|.|..... ... .+.|++......           . . ..+....  .......|.|.+++.+|+|.|.|
T Consensus        11 ~~~G~~v~L~C~~~~~~~~~-~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C   89 (116)
T cd07706          11 VQVGEEVTLNCRYETSWTNY-YIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFC   89 (116)
T ss_pred             EcCCCCEEEEEEEeCCCCce-EEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEE
Confidence            8899999999998753 334 499998432110           0 0 1122222  23446779999999999999999


Q ss_pred             EEEcC
Q psy3823         300 WARNE  304 (365)
Q Consensus       300 ~a~n~  304 (365)
                      .+...
T Consensus        90 ~~~~~   94 (116)
T cd07706          90 ALSTL   94 (116)
T ss_pred             EEECC
Confidence            99853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.83  E-value=0.0002  Score=52.62  Aligned_cols=38  Identities=11%  Similarity=0.066  Sum_probs=31.9

Q ss_pred             CEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         280 STSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       280 ~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      ....|.|.+++.+|+|.|.|.+.......+..+.|+|.
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            35679999999999999999999977667777777765

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.82  E-value=8.1e-05  Score=55.20  Aligned_cols=81  Identities=12%  Similarity=0.151  Sum_probs=51.0

Q ss_pred             eeeecCceEEEEEEEe-eeCCCceeEEEeCCCCCCCC------------------CCceeEe--eCCCEEEEEEcCCCcc
Q psy3823         234 YGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSDTAPR------------------PLTSYSI--QDGSTSVARYTPTSEL  292 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~-~~p~~~~~~W~~~~~~~~~~------------------~~~~~~~--~~~~~s~l~i~~v~~~  292 (365)
                      ..+..|+.+.|.|... ..... .+.|++........                  ..+..+.  .......|.|.+++.+
T Consensus        11 v~~~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~   89 (114)
T PF07686_consen   11 VTVQEGESVTLPCSYSSSSNQS-SVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS   89 (114)
T ss_dssp             EEEETTSEEEEEEEEESSSSGS-EEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred             EEEecCCCEEEEEEEeCCCCcc-eEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence            3388999999999998 33334 59999844311000                  0000111  1223567999999999


Q ss_pred             cCeEEEEEEEcC-CccceecEEEE
Q psy3823         293 EYGTLLCWARNE-QGSQRTPCTFH  315 (365)
Q Consensus       293 d~G~Y~C~a~n~-~g~~~~~~~l~  315 (365)
                      |+|.|.|.+... .........|.
T Consensus        90 DsG~Y~C~v~~~~~~~~~~~~~L~  113 (114)
T PF07686_consen   90 DSGTYFCQVSTSNEQSFGNGTKLT  113 (114)
T ss_dssp             GEEEEEEEEEESSEEEEEEEEEEE
T ss_pred             cCEEEEEEEEECCCCEECCcEEEE
Confidence            999999999987 22333444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.82  E-value=0.00018  Score=49.42  Aligned_cols=74  Identities=11%  Similarity=0.171  Sum_probs=51.2

Q ss_pred             eecCceEEEEEEEeeeCCC--ceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         236 ALRNEQVLVSCTVDANPQA--QYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~--~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      +..|++++|+|.....+.|  . +.|...++....       ........|.+..+...|+|..+|.+.-..-.....+.
T Consensus        11 lL~G~sLtLtl~~~s~s~p~~~-i~w~~P~n~~~~-------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~   82 (88)
T cd07694          11 VLSGTNLTLTLHGSSNSLPAFK-VEWRGPGNKSKQ-------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD   82 (88)
T ss_pred             eecCCcEEEEEecCCCCCCCcc-EEEeCCCCccce-------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence            7889999999999654444  6 999876653211       11122335899999999999999999765444445555


Q ss_pred             EEEE
Q psy3823         314 FHVV  317 (365)
Q Consensus       314 l~v~  317 (365)
                      +.|.
T Consensus        83 V~Vl   86 (88)
T cd07694          83 IKVL   86 (88)
T ss_pred             EEEE
Confidence            5443

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.80  E-value=0.00021  Score=51.81  Aligned_cols=68  Identities=15%  Similarity=0.296  Sum_probs=44.2

Q ss_pred             eecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC-----------CceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         132 LNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS-----------AGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      +..|..++|.|.+.| +|....+.|++||.++.....           .+.......|.+..-...+...|+|.+.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            345788999999998 566666899999988753210           01111133455544444566789999998754

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.79  E-value=0.00056  Score=50.48  Aligned_cols=37  Identities=8%  Similarity=0.096  Sum_probs=32.5

Q ss_pred             EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         281 TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       281 ~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      ...|.|.+++.+|+|.|+|.+.+.....+..+.|.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            4679999999999999999999988888888888775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.78  E-value=0.00017  Score=51.48  Aligned_cols=75  Identities=15%  Similarity=0.207  Sum_probs=44.7

Q ss_pred             ceEEEEEEEeeeCCCceeEEEeCCCCCCCCC----------------CceeEe-eCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRP----------------LTSYSI-QDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       240 ~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~----------------~~~~~~-~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.++|.|..........+.|.+.........                .+..+. .......|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            4688999885422222588988542110000                011111 11123569999999999999999886


Q ss_pred             c-CCccceecEEE
Q psy3823         303 N-EQGSQRTPCTF  314 (365)
Q Consensus       303 n-~~g~~~~~~~l  314 (365)
                      . +.|..++.+.+
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            4 57777665443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.77  E-value=0.00024  Score=50.69  Aligned_cols=71  Identities=14%  Similarity=0.095  Sum_probs=46.4

Q ss_pred             ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCC--CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRP--LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      ..|+..+|.|.+.|+ |....+.|+++|.......  .......+++.+......+..++...|+|.+.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence            457889999999985 5554799999987543321  1222244455544444445556777999999887543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.74  E-value=0.00023  Score=50.77  Aligned_cols=68  Identities=12%  Similarity=0.186  Sum_probs=43.4

Q ss_pred             CCcEEEEEEeCC-CCCcceEEEEeCCCcCCCCCC---ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          27 NEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPL---TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        27 G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      |+.++|.|.+.+ .|....++|++++.. +....   ......++.........+...+.+.|+|.+.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~-~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~   85 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGED-SVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK   85 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEE-CcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            788999999655 576669999999853 32221   112223444333334444455889999999886543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.74  E-value=0.00023  Score=51.94  Aligned_cols=67  Identities=15%  Similarity=0.255  Sum_probs=45.4

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCC--CCC----------C---------CCceeEeeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSD--TAP----------R---------PLTSYSIQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~--~~~----------~---------~~~~~~~~~~~~s~l~i~~v~~~d~  294 (365)
                      +..|+.++|.|......... +.|++....  ...          .         ..+.....+.....|.|++++.+|+
T Consensus         3 v~~G~~vtL~C~~~~~~~~~-v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTG-CSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCc-EEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            67899999999986543444 999986432  110          0         0011112334567799999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.72  E-value=0.0003  Score=52.01  Aligned_cols=82  Identities=15%  Similarity=0.255  Sum_probs=50.3

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCC---------ceEEeeceEEEeeecCC
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASA---------GRIITNQTLVLQSVTRH  185 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~---------~~~~~~~~l~i~~~~~~  185 (365)
                      +|.+.+-+.+   ...+.+++.++|.|.+.+ +|....++|++||..+......         +.....+.|.+......
T Consensus         2 ~P~V~v~~ps---~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~   78 (115)
T cd05769           2 PPTVAIFPPS---EAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWF   78 (115)
T ss_pred             CCEEEEECcC---hHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhc
Confidence            4555554432   123446678999999998 5665679999999887532110         11112344555554443


Q ss_pred             C-CeEEEEEEEcCCCC
Q psy3823         186 S-GGLYACSAINSQGE  200 (365)
Q Consensus       186 d-~G~Y~C~~~~~~~~  200 (365)
                      + ...|+|.+.+....
T Consensus        79 ~~~~~ytC~V~H~g~~   94 (115)
T cd05769          79 NPRNTFTCIVQFYGGT   94 (115)
T ss_pred             cCCCeEEEEEEEeCCc
Confidence            3 67899999987553

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.72  E-value=0.00022  Score=52.14  Aligned_cols=67  Identities=15%  Similarity=0.224  Sum_probs=44.1

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCc---CC------CCC-C---------ceeE--ecCCeEEEEEEccCCCCC
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSG---TA------PRP-L---------TSYS--IQDGSTSVARYTPTSELE   81 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~---~l------~~~-~---------~~~~--~~~~~~~~l~i~~~~~~d   81 (365)
                      .+.+|++++|.|........ .+.||+....   ..      ... .         ..+.  ........|.|.+++.+|
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD   80 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPT-GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN   80 (104)
T ss_pred             cccCCCeEEEEEEecCCCCC-cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence            36789999999996443344 7999986431   01      000 0         0011  122355679999999999


Q ss_pred             CeEEEEEEE
Q psy3823          82 YGTLLCWAR   90 (365)
Q Consensus        82 ~G~Y~C~a~   90 (365)
                      +|.|.|.+.
T Consensus        81 sgtY~Ca~~   89 (104)
T cd05720          81 EGYYFCSVA   89 (104)
T ss_pred             CEEEEEEEc
Confidence            999999876

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.71  E-value=0.00028  Score=50.21  Aligned_cols=68  Identities=22%  Similarity=0.168  Sum_probs=41.8

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      .++..+|.|.+.|+ |....+.|.++|........  ......+++........+...+...|+|.+....
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence            45668999999985 65557999999875432211  1122344544332223334456678999998753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd00096 Ig Immunoglobulin domain

Probab=97.71  E-value=0.00017  Score=47.67  Aligned_cols=62  Identities=21%  Similarity=0.337  Sum_probs=44.3

Q ss_pred             EEEEEEeCCCCCcceEEEEeCCCcCCCCCCce----eEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          30 VLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS----YSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        30 ~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      +.|.|...+.+.. .+.|++++.. .......    ..........|.+.++..+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~-~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPP-TITWLKNGKP-LPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCC-cEEEEECCEE-CCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            4789997666666 9999998876 4333211    11123455579999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.69  E-value=0.00045  Score=49.13  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=53.1

Q ss_pred             eEEEEecCCcEEE-EEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          20 RIYGALRNEQVLV-SCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        20 ~~~~v~~G~~~~l-~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ....+.+|+.+.+ .|. .++.|.+ .++|+.+... ... .......++   -.+.+.+.+...+|...++|.+.+...
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa-~IsW~~~~~G-~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAA-DVTWETNVYG-TSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCC-EeEEeCCCCC-ccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            3456789999999 999 8899999 9999987544 321 111222333   234677777788899999999998765


Q ss_pred             CCc
Q psy3823          95 NQR   97 (365)
Q Consensus        95 ~~~   97 (365)
                      ...
T Consensus        86 ~~~   88 (97)
T cd07704          86 QQD   88 (97)
T ss_pred             CCC
Confidence            443

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.69  E-value=0.00047  Score=49.10  Aligned_cols=76  Identities=21%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             ecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCCe---EEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823          25 LRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGNQRTPC  100 (365)
Q Consensus        25 ~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~  100 (365)
                      .....+.+.|. .+++|.+ .++|+++... ... .......+++   .+.|.+.+...+|...|+|.+.+........+
T Consensus        13 ~~~~~~va~C~s~~gkPaa-~IsW~~~~~g-~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~   89 (95)
T cd07703          13 GTIPVPVAKCVSANGRPPA-RISWSSTLGG-NAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL   89 (95)
T ss_pred             CCCccEEEEEEcCCCCCCc-EEEEEcCCCC-Cee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence            44567889998 7799999 9999998433 111 1111223333   45788888888899999999999876655444


Q ss_pred             EEE
Q psy3823         101 TFH  103 (365)
Q Consensus       101 ~l~  103 (365)
                      .++
T Consensus        90 ~~~   92 (95)
T cd07703          90 PVT   92 (95)
T ss_pred             EEE
Confidence            444

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.68  E-value=0.00036  Score=49.86  Aligned_cols=65  Identities=20%  Similarity=0.385  Sum_probs=40.0

Q ss_pred             CcEEEEEEEEecCCCCeeEEEeCCe----EEee-----------CCCCceEE-----eeceEEEeeecCCCCeEEEEEEE
Q psy3823         136 VDIYFDCHIQANPPYKKLIWTHNGI----TISN-----------NASAGRII-----TNQTLVLQSVTRHSGGLYACSAI  195 (365)
Q Consensus       136 ~~v~l~C~~~~~p~~~~i~W~~~~~----~l~~-----------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~  195 (365)
                      +.++|.|..........+.|.+...    .+..           .-..+...     .+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            4678888876433344477887321    1211           00011221     24789999999999999999997


Q ss_pred             cC-CCC
Q psy3823         196 NS-QGE  200 (365)
Q Consensus       196 ~~-~~~  200 (365)
                      .. .|.
T Consensus        81 t~P~g~   86 (96)
T cd05889          81 TYPQGS   86 (96)
T ss_pred             eCCCCC
Confidence            54 443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.67  E-value=0.00031  Score=49.83  Aligned_cols=68  Identities=12%  Similarity=0.081  Sum_probs=46.0

Q ss_pred             ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc--eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT--SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      ..|+..+|.|.+.|+ |....+.|.+||.... ....  .....+++........+..++...|+|.+....
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            346667999999985 5555799999997544 3221  223456665555555566677888999998853

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.67  E-value=0.0004  Score=49.28  Aligned_cols=69  Identities=13%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             ecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCce---eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          25 LRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        25 ~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ..|+..+|.|.+ +.+|....++|++||.. +. +...   ....+++........+...+...|.|.+.+....
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~-~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l~   85 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVK-IP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSMS   85 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEE-CC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCCC
Confidence            346678999994 44777779999999988 66 3221   2234554444444455667888999999986533

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.66  E-value=0.00015  Score=52.43  Aligned_cols=71  Identities=13%  Similarity=0.157  Sum_probs=44.7

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCCEE---EEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGSTS---VARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~s---~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      ...++.++|.|.+.|+ |....+.|+++|........  ......+++.+   .|.+..-...+...|+|.|.+..-
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            4456789999999885 54447999999875432211  11223355543   344544444457799999988654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.62  E-value=0.00051  Score=46.77  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=42.4

Q ss_pred             cEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce---eEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          29 QVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDG---STSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        29 ~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      .++|.|. .+..|....++|++++.. +..+...   ....++   ..+.|.+.....++...|+|.+.+...
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~-~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~   72 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQE-VTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL   72 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEE-CCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence            3689999 445577559999999986 4433221   112333   233566666677788999999987653

>cd00096 Ig Immunoglobulin domain

Probab=97.58  E-value=0.00029  Score=46.54  Aligned_cols=63  Identities=24%  Similarity=0.333  Sum_probs=43.8

Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCc---eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLT---SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      +.|.|.+.+.+... +.|++++.........   ...........|.|.+++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPT-ITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCc-EEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            46899998855665 9999977543332211   111223345679999999999999999998876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.58  E-value=0.00052  Score=49.00  Aligned_cols=70  Identities=20%  Similarity=0.311  Sum_probs=48.2

Q ss_pred             ecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          25 LRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        25 ~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .......+.|. .+++|.+ .|+|+++... ... .......++   ..+.|.+.....+|...|+|.+.+......
T Consensus        13 ~~~~~~va~C~s~~gkP~a-~ItW~~~~~~-~~~-~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~   86 (95)
T cd05719          13 GGEPVTVATCVSANGKPPA-TISWETTLGG-EAE-TQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP   86 (95)
T ss_pred             CCCccEEEEEECCCCcCCC-EEEEEeCCCC-cce-eEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence            34567788899 6899999 9999998322 111 111112233   345788888888899999999998776554

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.58  E-value=0.00043  Score=49.28  Aligned_cols=68  Identities=19%  Similarity=0.132  Sum_probs=42.9

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce---eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      .|+..+|.|. .+.+|....++|.+||.. +..+...   ....+++........+..++...|+|.+.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~-~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~l   85 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVP-VTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWGL   85 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeE-ccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCCC
Confidence            3666899999 445787779999999988 6553221   122334332222223334566799999998653

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.54  E-value=0.00029  Score=49.11  Aligned_cols=69  Identities=17%  Similarity=0.191  Sum_probs=47.0

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCcee--E-ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSY--S-IQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~--~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      .++.++|.|. .+..|....|+|++++.. +.......  . ..+++.+......+.+.+...|+|.+.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~-~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKE-VTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEE-ETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccce-eeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCCC
Confidence            3899999999 555776669999999987 65543321  1 24554444333344467777999999987644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.53  E-value=0.00046  Score=51.59  Aligned_cols=73  Identities=11%  Similarity=0.060  Sum_probs=46.6

Q ss_pred             CceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-C-------CC-C---------CceeEe--cCCeEEEEEEc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-A-------PR-P---------LTSYSI--QDGSTSVARYT   75 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l-------~~-~---------~~~~~~--~~~~~~~l~i~   75 (365)
                      ++....+.+|++++|.|.....-  .. .+.|||-.... .       .. .         .+....  .......|.|.
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~-~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSY-GVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN   81 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccc-eEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence            45567889999999999843221  34 79999854310 0       00 0         000111  11233469999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy3823          76 PTSELEYGTLLCWARN   91 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~   91 (365)
                      +++.+|+|.|.|.+..
T Consensus        82 ~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          82 SLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCHHHCEEEEEEEEc
Confidence            9999999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.52  E-value=0.00074  Score=48.12  Aligned_cols=67  Identities=21%  Similarity=0.313  Sum_probs=43.4

Q ss_pred             cCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCC-C-------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         134 EGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNA-S-------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       134 ~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~-~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .++.++|.|.+.| +|....++|++||..+.... .       .........|.+......+...|+|.+.+....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            4566999999998 67667799999998863211 1       111111234545544445678999999987643

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.50  E-value=0.00034  Score=48.72  Aligned_cols=71  Identities=20%  Similarity=0.200  Sum_probs=45.4

Q ss_pred             ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeE--eeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYS--IQDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      ..++.++|.|.+.++ |....+.|+++|............  ..++..+......+...+...|+|.+.+....
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTSS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCCC
Confidence            348899999999885 545479999988754332222111  34555444333344466677899999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.50  E-value=0.00029  Score=49.81  Aligned_cols=67  Identities=27%  Similarity=0.383  Sum_probs=47.3

Q ss_pred             CCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCcee-E-ecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          27 NEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSY-S-IQDG---STSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        27 G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~-~-~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      |+.+.|.|. .+++|.+ .++|+.++.. +....... . ..++   ..+.|.+.....++...++|.|.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~-~i~W~~~~~~-~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPP-QITWYLDGGP-VVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-E-EEEEEETTCE-ECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCe-EEEEEECCCc-eeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            679999998 8889999 9999999987 51111111 1 1222   3457888877778889999999987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.48  E-value=0.00052  Score=49.10  Aligned_cols=70  Identities=23%  Similarity=0.340  Sum_probs=43.7

Q ss_pred             eecCceEEEEEEEeee--CCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCc---ccCeEEEEEEEcCCc
Q psy3823         236 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSE---LEYGTLLCWARNEQG  306 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~---~d~G~Y~C~a~n~~g  306 (365)
                      ...+..++|.|.+.++  |.+..+.|.++|.... .........+++.+......+..   .....|+|.|.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEA-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCccCc-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            4467889999999984  4444799999987421 11111224456554444444444   334579999998754

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.47  E-value=0.0014  Score=49.21  Aligned_cols=70  Identities=9%  Similarity=0.018  Sum_probs=45.2

Q ss_pred             eeecCceEEEEEEEeeeC-----CCceeEEEeCCCCC---CC----C---------CCceeE--eeCCCEEEEEEcCCCc
Q psy3823         235 GALRNEQVLVSCTVDANP-----QAQYFTWAFNNSDT---AP----R---------PLTSYS--IQDGSTSVARYTPTSE  291 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p-----~~~~~~W~~~~~~~---~~----~---------~~~~~~--~~~~~~s~l~i~~v~~  291 (365)
                      .+..|+.++|.|......     ....+.|++.....   ..    .         ..+..+  ......+.|.|.+++.
T Consensus        10 ~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~   89 (119)
T cd05712          10 SVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQP   89 (119)
T ss_pred             EEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCCh
Confidence            388999999999875322     11248999864321   00    0         011111  1234456799999999


Q ss_pred             ccCeEEEEEEEcC
Q psy3823         292 LEYGTLLCWARNE  304 (365)
Q Consensus       292 ~d~G~Y~C~a~n~  304 (365)
                      +|+|.|.|.+...
T Consensus        90 ~Dsg~Y~C~~~~~  102 (119)
T cd05712          90 EDSGKYFFRVELG  102 (119)
T ss_pred             hhCeEEEEEEEcC
Confidence            9999999988664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.45  E-value=0.00061  Score=48.76  Aligned_cols=73  Identities=15%  Similarity=0.197  Sum_probs=44.9

Q ss_pred             EecCCcEEEEEEeCCC--CCcceEEEEeCCCcCCCCC-CceeEecCCeEE---EEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          24 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGTAPRP-LTSYSIQDGSTS---VARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~l~~~-~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      +..|+.++|.|.+.+.  |....++|+|++....... .......+++..   .|.+....+++...|+|.+.+.....
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~   89 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPT   89 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCC
Confidence            4458999999995554  7777999999875412211 111222344333   44455444455678999999876443

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.44  E-value=0.0025  Score=45.47  Aligned_cols=66  Identities=11%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             eecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCCc-e------EEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         132 LNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASAG-R------IITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~~-~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      +..++.++|.|.+.+ +|....++|.+||..+....... .      ......|.+..-.  ....|+|.+.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g~   86 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEGI   86 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECCC
Confidence            444678999999998 67777789999998864321100 1      1112233333221  23459999998543

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.42  E-value=0.00099  Score=47.39  Aligned_cols=70  Identities=13%  Similarity=0.276  Sum_probs=45.6

Q ss_pred             ceecCCcEEE-EEEEEecCCCCeeEEEeCCeEEe----eCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         131 VLNEGVDIYF-DCHIQANPPYKKLIWTHNGITIS----NNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       131 ~~~~g~~v~l-~C~~~~~p~~~~i~W~~~~~~l~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .+.+|+.+.+ .|.+.+..++..|.|+.+..-..    .....+...-.+.+.+.....+|.-.++|.+.+....
T Consensus        12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704          12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             EeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            5678889999 99888544444599998522111    1111222222456777777778889999999988653

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.41  E-value=0.00055  Score=48.98  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=44.7

Q ss_pred             eecCceEEEEEEEeee--CCCceeEEEeCCCCCCC-CCCceeEeeCCCEEEEEEcCCCcc---cCeEEEEEEEcCCcc
Q psy3823         236 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSDTAP-RPLTSYSIQDGSTSVARYTPTSEL---EYGTLLCWARNEQGS  307 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~s~l~i~~v~~~---d~G~Y~C~a~n~~g~  307 (365)
                      +..|+.++|.|.+.|+  |+...+.|.++++.... .........+++.+......+..+   +.-.|+|.|.+..-.
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~   88 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP   88 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence            5568999999999988  55547999998742211 111112244555544444444443   455799999987543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.39  E-value=0.0018  Score=45.66  Aligned_cols=64  Identities=20%  Similarity=0.439  Sum_probs=42.6

Q ss_pred             CCcEEEEEEEEe-cCCCCeeEEEeCCeEEee-------CCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         135 GVDIYFDCHIQA-NPPYKKLIWTHNGITISN-------NASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       135 g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~-------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      |+.+.|.|.+.+ +|++. |.|+.++..+..       ....+.....+.|.+..-..++...++|.+.+...
T Consensus        14 ~~~~~~~C~s~~~~P~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQ-ITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EE-EEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeE-EEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            679999998875 56555 999998877711       01111222234666666556788899999998754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.37  E-value=0.00066  Score=49.25  Aligned_cols=71  Identities=14%  Similarity=0.152  Sum_probs=45.1

Q ss_pred             ecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCc-e---eEec--CCe---EEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          25 LRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLT-S---YSIQ--DGS---TSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        25 ~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~-~---~~~~--~~~---~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ..|+.++|.|.+ +..|....++|++++.. +..... .   ....  +++   .+.|.+..-.+.+...|+|.+.+...
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~-~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQP-LSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEE-CCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            347889999994 44676668999999987 543321 1   1111  232   23455554445567789999998654


Q ss_pred             CC
Q psy3823          95 NQ   96 (365)
Q Consensus        95 ~~   96 (365)
                      ..
T Consensus        93 ~~   94 (102)
T cd05768          93 PL   94 (102)
T ss_pred             Cc
Confidence            43

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.36  E-value=0.0011  Score=49.14  Aligned_cols=76  Identities=14%  Similarity=0.230  Sum_probs=45.5

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc--eeEeeC-CCE---EEEEEcCCCccc-CeEEEEEEEcCCcc
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT--SYSIQD-GST---SVARYTPTSELE-YGTLLCWARNEQGS  307 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~--~~~~~~-~~~---s~l~i~~v~~~d-~G~Y~C~a~n~~g~  307 (365)
                      +..++.++|.|.+.++ |....+.|++||.........  .....+ ++.   +.|.+......+ ...|+|.+.+....
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            3456779999999885 554469999998643322111  111111 333   445555444333 56899999987665


Q ss_pred             ceec
Q psy3823         308 QRTP  311 (365)
Q Consensus       308 ~~~~  311 (365)
                      ....
T Consensus        95 ~~~~   98 (115)
T cd05769          95 DTDK   98 (115)
T ss_pred             ccee
Confidence            5443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.28  E-value=0.00056  Score=44.13  Aligned_cols=51  Identities=18%  Similarity=0.208  Sum_probs=34.4

Q ss_pred             ecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          25 LRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        25 ~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      ..|..|+|+|...+   . .+.|.+++.. +.....          .+.+.+-. ++.|.|+|.+.+
T Consensus         5 isGTtVtlTCP~~~---~-~i~W~~n~~~-~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSG---D-DIKWKKNDQV-SQGSDE----------KYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCC---C-CceEEeCCcc-CCCCCc----------eEEeeccC-CCCceEEEEeCC
Confidence            35999999997542   2 5999999866 443111          33333444 789999999853

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.27  E-value=0.0018  Score=46.34  Aligned_cols=81  Identities=19%  Similarity=0.329  Sum_probs=48.1

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEe-c-CCCCeeEEEeCCeEEeeCCCCceE------EeeceEEEeeecCCCC
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-N-PPYKKLIWTHNGITISNNASAGRI------ITNQTLVLQSVTRHSG  187 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~-p~~~~i~W~~~~~~l~~~~~~~~~------~~~~~l~i~~~~~~d~  187 (365)
                      .|.+.+.+.+   ...+..+..++|.|.+.+ + |....+.|.++|.. .........      ...+.|.+..-.....
T Consensus         3 ~PsV~l~pPs---~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g   78 (99)
T cd04986           3 KPSLSLQRPA---LEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKG   78 (99)
T ss_pred             CCEEEEECcC---hHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCC
Confidence            4555554332   123446788999999997 5 65677999998865 211111111      1133455554334455


Q ss_pred             eEEEEEEEcCCCC
Q psy3823         188 GLYACSAINSQGE  200 (365)
Q Consensus       188 G~Y~C~~~~~~~~  200 (365)
                      ..|+|.+.+....
T Consensus        79 ~~ytC~V~H~~l~   91 (99)
T cd04986          79 EPFACTVTHPEGD   91 (99)
T ss_pred             CeEEEEEECCCcc
Confidence            6799999987653

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.27  E-value=0.0016  Score=46.37  Aligned_cols=71  Identities=11%  Similarity=0.128  Sum_probs=43.7

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      .++.++|.|.+.|+ |....+.|.++|........  ......+++.   +.|.+..-...+...|+|.|.+.....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   89 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF   89 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence            45669999999985 55457999999875322111  1112233433   345555444446679999998876543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.21  E-value=0.0019  Score=44.39  Aligned_cols=61  Identities=15%  Similarity=0.180  Sum_probs=37.3

Q ss_pred             eEEEEEEEeeeCCC-ceeEEEeCCCCCCC-----------------CCCceeEeeC--CCEEEEEEcCCCcccCeEEEEE
Q psy3823         241 QVLVSCTVDANPQA-QYFTWAFNNSDTAP-----------------RPLTSYSIQD--GSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       241 ~~~l~C~~~~~p~~-~~~~W~~~~~~~~~-----------------~~~~~~~~~~--~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      +++|.|.+.....+ ..+.|++.......                 ...+......  .....|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            36788988754433 13889875421100                 0111112222  4567799999999999999996


Q ss_pred             E
Q psy3823         301 A  301 (365)
Q Consensus       301 a  301 (365)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            4

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.16  E-value=0.0019  Score=46.16  Aligned_cols=70  Identities=14%  Similarity=0.155  Sum_probs=39.2

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEe-eCCCEEEEEEcCCCcc-cCeEEEEEEEcCC
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSI-QDGSTSVARYTPTSEL-EYGTLLCWARNEQ  305 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~s~l~i~~v~~~-d~G~Y~C~a~n~~  305 (365)
                      ...+..++|.|.+.++ |....+.|.++|............. .+++.....-..+..+ ....|+|.|....
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g   85 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG   85 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence            3345779999999984 6555799999987543221111111 1223222222233333 3445999998843

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.16  E-value=0.0056  Score=43.68  Aligned_cols=64  Identities=8%  Similarity=0.241  Sum_probs=40.3

Q ss_pred             cCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC--CceE------EeeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823         134 EGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS--AGRI------ITNQTLVLQSVTRHSGGLYACSAINSQ  198 (365)
Q Consensus       134 ~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~--~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~~~~  198 (365)
                      .++.++|.|.+.+ +|....++|.+||.. .....  ....      .....|.+..........|+|++.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4667999999998 677777899999997 32110  0111      112234444433334667999999865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.14  E-value=0.0037  Score=44.60  Aligned_cols=67  Identities=21%  Similarity=0.343  Sum_probs=44.1

Q ss_pred             CceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         239 NEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       239 g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      .....+.|.+ .|.|.+. |.|+++.....  ........++.   .+.|.+.....+++..|+|.+.|..-..
T Consensus        15 ~~~~va~C~s~~gkP~a~-ItW~~~~~~~~--~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          15 EPVTVATCVSANGKPPAT-ISWETTLGGEA--ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             CccEEEEEECCCCcCCCE-EEEEeCCCCcc--eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            4568889999 5688888 99999621111  11111223343   5678887776677779999999987543

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>KOG1480|consensus

Probab=97.14  E-value=0.0003  Score=66.63  Aligned_cols=162  Identities=14%  Similarity=0.214  Sum_probs=90.5

Q ss_pred             ceecCCcEEEEEEEEecCCCC---eeEEEeCCeEEee---CCCCceEEeeceEEEeeecCCCC---eEE--EEEEEcCCC
Q psy3823         131 VLNEGVDIYFDCHIQANPPYK---KLIWTHNGITISN---NASAGRIITNQTLVLQSVTRHSG---GLY--ACSAINSQG  199 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~---~i~W~~~~~~l~~---~~~~~~~~~~~~l~i~~~~~~d~---G~Y--~C~~~~~~~  199 (365)
                      -+..|.++.|.|.+...+...   +-.|.+...-...   ....+.....-.+.|.....++.   -.|  +|.++...|
T Consensus        35 yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~~cQc~a~~~~g  114 (909)
T KOG1480|consen   35 YIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDYWCQCVAWSDDG  114 (909)
T ss_pred             ceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccceeeeeeeecCCC
Confidence            366789999999875332211   1236654332221   11112222223344443333332   235  456777777


Q ss_pred             CCCcccEEEEEeeeeecccccCCCCcee-cCccceeeeecCceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCceeEee
Q psy3823         200 EGGSTPFDLNINKMVNLIFNSIDEPVCK-QSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQ  277 (365)
Q Consensus       200 ~~~s~~~~l~v~~~~~~~~~~~~~p~~~-~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~~~~~~  277 (365)
                      ...++...+.+.          +.-... ..+.. ..|..+....|.|.. .+.|... +.|++++..... ........
T Consensus       115 ~~~s~~a~vr~a----------y~rk~f~~~p~~-q~V~~~s~~~l~cr~pe~~paae-~~w~k~e~~~~p-d~n~~~~~  181 (909)
T KOG1480|consen  115 TVKSRKATVRIA----------YLRKHFEQSPVG-QEVQEETTLQLPCRPPEGDPKAE-VEWLKNEVVIDP-DANVIRAS  181 (909)
T ss_pred             cchhhhHHHHHH----------HHHHhhccChhh-heecccccccccccCcccchhhh-hhccccCCCCCc-cccchhhh
Confidence            544443333332          111111 11111 126677888888877 4667776 999998875444 33333333


Q ss_pred             CCCEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         278 DGSTSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       278 ~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      +..   +.+..+...|.|.|+|+|.|-.+..
T Consensus       182 d~~---li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  182 DHN---LIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             cCC---ccccchhhhhcccceeeeehhhccc
Confidence            443   8889999999999999999988864

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.12  E-value=0.004  Score=46.51  Aligned_cols=67  Identities=10%  Similarity=0.098  Sum_probs=44.0

Q ss_pred             eecCceEEEEEEEeeeC--CCceeEEEeCCCCCCCC------------------CCceeEeeC--CCEEEEEEcCCCccc
Q psy3823         236 ALRNEQVLVSCTVDANP--QAQYFTWAFNNSDTAPR------------------PLTSYSIQD--GSTSVARYTPTSELE  293 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p--~~~~~~W~~~~~~~~~~------------------~~~~~~~~~--~~~s~l~i~~v~~~d  293 (365)
                      +.+|+.++|.|...+..  ... +.|++-.....+.                  ..++....+  .....|.|.+++.+|
T Consensus         9 v~~G~~vtL~C~~~~~~~~~~~-~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D   87 (117)
T cd04981           9 VKPGQSLKLSCKASGFTFTSYG-VNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPED   87 (117)
T ss_pred             EcCCCCEEEEEEEeCCCcccce-EEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHH
Confidence            78999999999876433  344 9998743211110                  011111111  234579999999999


Q ss_pred             CeEEEEEEEc
Q psy3823         294 YGTLLCWARN  303 (365)
Q Consensus       294 ~G~Y~C~a~n  303 (365)
                      +|.|.|.+..
T Consensus        88 sa~YyCa~~~   97 (117)
T cd04981          88 TAVYYCARGL   97 (117)
T ss_pred             CEEEEEEEEc
Confidence            9999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.12  E-value=0.0022  Score=44.05  Aligned_cols=23  Identities=13%  Similarity=0.118  Sum_probs=20.0

Q ss_pred             CeEEEEEEccCCCCCCeEEEEEE
Q psy3823          67 GSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        67 ~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      .....|.|.+++.+|+|.|.|.+
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       59 KNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEcC
Confidence            45568999999999999999963

>TIGR00864 PCC polycystin cation channel protein

Probab=97.02  E-value=0.85  Score=50.95  Aligned_cols=194  Identities=13%  Similarity=0.154  Sum_probs=105.7

Q ss_pred             EecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEE--EEeCCCCCcccEE
Q psy3823          24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW--ARNEQGNQRTPCT  101 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--a~~~~~~~~~~~~  101 (365)
                      +..|+.++|.-........ .++|..++.. -........       +-     +....|.|.-.  |.|..+....++.
T Consensus      1709 aavn~~V~fs~~lt~GS~v-ty~W~~gdG~-s~~~s~p~~-------tH-----tf~~~G~y~VtVta~N~vss~~~s~~ 1774 (2740)
T TIGR00864      1709 AAVNALINLSAELAEGSGL-QYRWFLEEGD-DLETSEPFM-------SH-----SFPSAGLHLVTMKAFNELGSANASEE 1774 (2740)
T ss_pred             ccCCCeEEEEEEecCCCCc-EEEEEECCCC-CcccCCCce-------EE-----EccCCceEEEEEEEEccccccceeEE
Confidence            3468999988875554555 9999987753 111111000       11     12256788765  4577776667777


Q ss_pred             EEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEee
Q psy3823         102 FHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQS  181 (365)
Q Consensus       102 l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~  181 (365)
                      +.|..      |.....+.  .........+..|..+.|.-.+.-..... ..|..++..-..  .       ...   .
T Consensus      1775 V~Vqe------pV~GL~i~--~~~~~~~~~~~ag~~v~F~a~vstGsnVs-w~W~f~~g~s~~--g-------k~v---~ 1833 (2740)
T TIGR00864      1775 VDVQE------PISGLKIR--AADAGEQNFFAADSSVCFQGELATGTNVS-WCWAIDGGSSKM--G-------KHA---C 1833 (2740)
T ss_pred             EEEEe------ccccceEe--cCCCCcccceecCcEEEEEEEccCCCeeE-EEEEeCCCCccc--c-------cee---E
Confidence            77721      12222222  11100001244567777776654222222 777776432110  0       111   1


Q ss_pred             ecCCCCeEEEEE--EEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEE
Q psy3823         182 VTRHSGGLYACS--AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTW  259 (365)
Q Consensus       182 ~~~~d~G~Y~C~--~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W  259 (365)
                      .+..++|.|+-.  |.|..+... .+..+.|+          .++.-.........+..|+.++|.+.+...+... +.|
T Consensus      1834 ~Tf~~aG~ytV~L~AsN~vs~~~-~s~~~~VQ----------e~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vt-f~w 1901 (2740)
T TIGR00864      1834 MTFPDAGTFAIRLNASNAVSGKS-ASREFFAE----------EPIFGLELKASKKIAAIGEKVEFQILLAAGSAVN-FRL 1901 (2740)
T ss_pred             EecCCCeEEEEEEEEEcccCcce-eeeeEEEE----------EecceEEEecccccccCCCEEEEEEEecCCCceE-EEE
Confidence            456788999766  467776544 45667776          3332111111212277899999999987767666 999


Q ss_pred             EeCCC
Q psy3823         260 AFNNS  264 (365)
Q Consensus       260 ~~~~~  264 (365)
                      .+.+.
T Consensus      1902 ~fGdg 1906 (2740)
T TIGR00864      1902 QIGGA 1906 (2740)
T ss_pred             EeCCC
Confidence            88754

Note: this model has been restricted to the amino half because for technical reasons.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.96  E-value=0.0062  Score=43.38  Aligned_cols=72  Identities=21%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             CceEEEEEEEe-eeCCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         239 NEQVLVSCTVD-ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       239 g~~~~l~C~~~-~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      .....+.|.+. +.|.+. |.|+.+....  .........+++   .+.|.+.....+|+..|+|.|.|..-.....+.
T Consensus        15 ~~~~va~C~s~~gkPaa~-IsW~~~~~g~--~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~   90 (95)
T cd07703          15 IPVPVAKCVSANGRPPAR-ISWSSTLGGN--ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP   90 (95)
T ss_pred             CccEEEEEEcCCCCCCcE-EEEEcCCCCC--eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence            34588999886 578887 9999863211  011111223444   467888777777778999999998754433333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.92  E-value=0.0049  Score=43.62  Aligned_cols=70  Identities=19%  Similarity=0.134  Sum_probs=44.6

Q ss_pred             EecCCcEEEEEE-eCCCCCc-ceEEEEeCCCcCCCCCCceeE----ecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          24 ALRNEQVLVSCT-VDANPQA-QYFTWAFNNSGTAPRPLTSYS----IQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        24 v~~G~~~~l~C~-~~~~p~~-~~v~W~~~~~~~l~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      +.+|..+++.|. .+..|.. +.+.|++++.. +.+......    ........+.|.....+|..+|.|.|.-...
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~-l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETL-LPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcce-ecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence            378999999999 5556652 38999998876 554432110    1111223566766666666699999875443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.88  E-value=0.0047  Score=40.18  Aligned_cols=49  Identities=14%  Similarity=0.248  Sum_probs=34.5

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      .++|.|.|..+    . +|+|++ |.......          ..+|.+-....+..|.|.|.+.+
T Consensus         6 ~~~V~L~C~~~----t-si~W~k-G~~~~~~~----------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----T-NITWKK-GKEILEVS----------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----C-cEEEec-Cccccccc----------ccEEeccCcccCCCcceEecCcc
Confidence            46899999652    3 899999 44412211          22677777788899999998765

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.88  E-value=0.0043  Score=44.29  Aligned_cols=67  Identities=13%  Similarity=0.226  Sum_probs=40.5

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc--eeEeeCCCEE---EEEEcCCCcccCeEEEEEEEcCC
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT--SYSIQDGSTS---VARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~s---~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      .++.++|.|.+.++ |....+.|.++|.. ......  .....+++..   .|.+..........|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            45679999999885 55557999999875 222111  1112245433   34444332223667999998865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03269 envelope glycoprotein C; Provisional

Probab=96.80  E-value=0.031  Score=50.72  Aligned_cols=116  Identities=14%  Similarity=0.147  Sum_probs=72.1

Q ss_pred             ceEEEeeecCCCCeEEEEEEEcCCCC--CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeC
Q psy3823         175 QTLVLQSVTRHSGGLYACSAINSQGE--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP  252 (365)
Q Consensus       175 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p  252 (365)
                      ..|.|..++..++|.|.=.+.+....  .....+.+.+.          ..|.+......   +..|+...-.|.+..+-
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y----------r~PsVsV~p~P---VL~Ge~YkAtC~vA~YY  355 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY----------KRPNITVIGDP---VLLGNPYAAYCKVNKYY  355 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe----------cCCCccccCCc---cccCCCceEEEEeeeec
Confidence            45999999999999998655433221  22244555555          66765544444   78999999999998754


Q ss_pred             CCc--eeEEEeCCCCCCCCCCc--eeEeeCCCE---EEEEEcCCCccc--CeEEEEEEEc
Q psy3823         253 QAQ--YFTWAFNNSDTAPRPLT--SYSIQDGST---SVARYTPTSELE--YGTLLCWARN  303 (365)
Q Consensus       253 ~~~--~~~W~~~~~~~~~~~~~--~~~~~~~~~---s~l~i~~v~~~d--~G~Y~C~a~n  303 (365)
                      ++.  .+.|+.||..+....-.  .....+|..   |.|.+......|  .-..+|.+.=
T Consensus       356 Pp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W  415 (566)
T PHA03269        356 PPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLW  415 (566)
T ss_pred             CCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEE
Confidence            433  89999997765432211  223455543   445442222222  4567998763

>PHA02633 hypothetical protein; Provisional

Probab=96.80  E-value=0.0027  Score=40.19  Aligned_cols=36  Identities=11%  Similarity=0.205  Sum_probs=31.9

Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEE
Q psy3823          70 SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVV  105 (365)
Q Consensus        70 ~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~  105 (365)
                      ..|.|-++..+|+|.|.|..++..-....++.|+|.
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            368899999999999999999887777789999984

>PHA02982 hypothetical protein; Provisional

Probab=96.78  E-value=0.14  Score=41.23  Aligned_cols=120  Identities=16%  Similarity=0.226  Sum_probs=72.1

Q ss_pred             EEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCc------------------eeEecCCeEEEEEEccCCCCC
Q psy3823          21 IYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLT------------------SYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~------------------~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      .+....|+++.|.|. .++.--. ...|+.++...+.+...                  ....-.+..++|+|.++..+.
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~-~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEIS-RAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhh-hheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            345677999999998 3332223 88999865432331110                  012245677899999999999


Q ss_pred             CeEEEEEEEeCCCCCcc-cEEEEEEeccccCCCCCCCeEEEEcCCccCccceecC-CcEEEEEEEEecCCCCeeEEEeCC
Q psy3823          82 YGTLLCWARNEQGNQRT-PCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEG-VDIYFDCHIQANPPYKKLIWTHNG  159 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g-~~v~l~C~~~~~p~~~~i~W~~~~  159 (365)
                      .|.|+|.+....+..+. .--|.|         . .-.+..         .+.++ ....+.|-+-+...+. ..|.-+|
T Consensus       112 ~GCYtc~~ks~~~k~E~c~kCl~V---------~-~~~V~~---------~W~e~nNeT~V~CyVgS~~~dv-p~W~V~G  171 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETCEKCLEI---------Q-KEDILY---------VVEEHNNETIITCFVGSKHGDV-PRFIVAG  171 (251)
T ss_pred             CCceEEEEecCCCchheeheeeeE---------e-cceEEE---------EEEecCCeEEEEEEEEeccCCC-ccEEEee
Confidence            99999999976654431 222333         0 111112         12344 4456789886654443 4788776


Q ss_pred             eE
Q psy3823         160 IT  161 (365)
Q Consensus       160 ~~  161 (365)
                      ..
T Consensus       172 Vv  173 (251)
T PHA02982        172 IV  173 (251)
T ss_pred             EE
Confidence            53

>PHA02982 hypothetical protein; Provisional

Probab=96.76  E-value=0.11  Score=41.73  Aligned_cols=119  Identities=13%  Similarity=0.267  Sum_probs=73.1

Q ss_pred             ccceecCCcEEEEEEEEecCCCCeeEEEeC-CeEEeeCC----------------C--CceE--EeeceEEEeeecCCCC
Q psy3823         129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHN-GITISNNA----------------S--AGRI--ITNQTLVLQSVTRHSG  187 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~-~~~l~~~~----------------~--~~~~--~~~~~l~i~~~~~~d~  187 (365)
                      ++....++.|.|.|..+......+..|..+ +..+....                .  ....  ..+++|+|.++..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            345567899999999765444444789873 33332100                0  0011  1257899999999999


Q ss_pred             eEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCC
Q psy3823         188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS  264 (365)
Q Consensus       188 G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~  264 (365)
                      |-|+|++....+....-.-.|.|+          ....+-.   .   ..-.....+.|-+-+...+. ..|..+|-
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~----------~~~V~~~---W---~e~nNeT~V~CyVgS~~~dv-p~W~V~GV  172 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQ----------KEDILYV---V---EEHNNETIITCFVGSKHGDV-PRFIVAGI  172 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEe----------cceEEEE---E---EecCCeEEEEEEEEeccCCC-ccEEEeeE
Confidence            999999998776655334566664          1111100   0   11234467889987766665 67887664

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.72  E-value=0.0031  Score=40.73  Aligned_cols=51  Identities=22%  Similarity=0.326  Sum_probs=34.2

Q ss_pred             ecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      ..|..|+|+|...+   .. +.|.+++... .          +....+.+.+-. +++|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~~---~~-i~W~~n~~~~-~----------g~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSG---DD-IKWKKNDQVS-Q----------GSDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCC---CC-ceEEeCCccC-C----------CCCceEEeeccC-CCCceEEEEeCC
Confidence            46899999998652   22 9999987422 1          112234455555 889999999954

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>KOG0613|consensus

Probab=96.68  E-value=0.009  Score=60.38  Aligned_cols=228  Identities=11%  Similarity=0.009  Sum_probs=122.5

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEE-eccccCCC------CCCCeEEEEcCCccCccceecCCcEEEEEE
Q psy3823          71 VARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVV-KAGECEHP------VDKPSVQIKLGRNLNASVLNEGVDIYFDCH  143 (365)
Q Consensus        71 ~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~-~~~~~~~~------~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~  143 (365)
                      ...+.+....+.+.|+|......++....+...+. ........      ..+|...+.. .....+....+..+++.|.
T Consensus       279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~-~~~~~v~a~d~~~v~m~~~  357 (1205)
T KOG0613|consen  279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGL-VRNLSVTARDNTLVEMPTA  357 (1205)
T ss_pred             cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccc-cccceeccccCcceeeccc
Confidence            45566666777888999888777776633332221 11111100      1122211111 1113344566788999999


Q ss_pred             EEecCCCCeeEEEeCCeEEeeCCCC----ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccc
Q psy3823         144 IQANPPYKKLIWTHNGITISNNASA----GRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFN  219 (365)
Q Consensus       144 ~~~~p~~~~i~W~~~~~~l~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~  219 (365)
                      ..+...+..+.|++++.........    ........+.+..+...+.+.|.|.+.|..|....... ..+..+.    -
T Consensus       358 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~-~~vs~~~----~  432 (1205)
T KOG0613|consen  358 LSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAE-STVSEEM----P  432 (1205)
T ss_pred             ccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccch-hhccccc----C
Confidence            9998888889999976555432211    11222457888899999999999999999986542221 2222000    0


Q ss_pred             cCCCCceecCccceeeeecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEE
Q psy3823         220 SIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       220 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      ...++.+............-+.+.+.|...+.+.+. .+.|++.+-......  .... .+....|.+.-....+++.|.
T Consensus       433 gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s--~~l~-r~~~tslLlk~~~~~~~A~~~  509 (1205)
T KOG0613|consen  433 GTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRS--VTLT-RDVLTSLLLKVASLSDGAQYT  509 (1205)
T ss_pred             CCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccccc--cccc-ccchhhheeeccCCCccchhh
Confidence            001122221111111122337788899888766332 377776544322111  1111 222333556666678888886


Q ss_pred             EEEEcCCcc
Q psy3823         299 CWARNEQGS  307 (365)
Q Consensus       299 C~a~n~~g~  307 (365)
                      -......|.
T Consensus       510 ~a~~~~~~k  518 (1205)
T KOG0613|consen  510 RALRTLQGK  518 (1205)
T ss_pred             hhhhccCCC
Confidence            555444443

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.62  E-value=0.0067  Score=39.50  Aligned_cols=49  Identities=22%  Similarity=0.483  Sum_probs=36.5

Q ss_pred             CCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEc
Q psy3823         135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAIN  196 (365)
Q Consensus       135 g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  196 (365)
                      .+.|.|.|...     ..|.|++ |..+...       .+.+|.+.....+..|.|.|.+.+
T Consensus         6 ~~~V~L~C~~~-----tsi~W~k-G~~~~~~-------~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA-----TNITWKK-GKEILEV-------SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC-----CcEEEec-Ccccccc-------cccEEeccCcccCCCcceEecCcc
Confidence            35799999651     3399999 6555421       156788888889999999998876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.43  E-value=0.63  Score=41.49  Aligned_cols=84  Identities=10%  Similarity=-0.031  Sum_probs=52.3

Q ss_pred             eEEEEecCCcE-EEEEEeCCCCCcceEEEEeCCCcCCCCCCc-----eeEec-------CCeEEEEEEccCCCCCCeEEE
Q psy3823          20 RIYGALRNEQV-LVSCTVDANPQAQYFTWAFNNSGTAPRPLT-----SYSIQ-------DGSTSVARYTPTSELEYGTLL   86 (365)
Q Consensus        20 ~~~~v~~G~~~-~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-----~~~~~-------~~~~~~l~i~~~~~~d~G~Y~   86 (365)
                      ..+.++.|+.. .|+|...+.-.+..+.-.+++.. -..-..     .....       ......+.+.+++.+|.|.|+
T Consensus        19 ynIi~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~-~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYr   97 (500)
T PHA02914         19 YNIFLRNEDEELALTCILPAAKMADKVVLIKGNDM-NNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFK   97 (500)
T ss_pred             ceEEEecCceEEeeEEEcCCCccccEEEEEeccCC-CCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEE
Confidence            34556777777 99999544444437777775432 111111     00001       134567889999999999999


Q ss_pred             EEEEeCCCCCc-ccEEEEE
Q psy3823          87 CWARNEQGNQR-TPCTFHV  104 (365)
Q Consensus        87 C~a~~~~~~~~-~~~~l~V  104 (365)
                      |.......+.- +.+.+.|
T Consensus        98 CIFYLn~~EtyrH~I~vrV  116 (500)
T PHA02914         98 CIFYLGDNESHKHEILVRK  116 (500)
T ss_pred             EEEEeCCceeEEEEEEEEE
Confidence            99876555443 7788887

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.39  E-value=0.071  Score=47.79  Aligned_cols=118  Identities=18%  Similarity=0.198  Sum_probs=74.7

Q ss_pred             eceEEEeeecCCCCeEEEEEEEcCCCCC-CcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeC
Q psy3823         174 NQTLVLQSVTRHSGGLYACSAINSQGEG-GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP  252 (365)
Q Consensus       174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p  252 (365)
                      .+.|.|..++...+|.|+=..-+..+.. ....+.+...          .+|.+......   +..|+...-.|.+..+-
T Consensus       181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y----------r~Psvsv~~~P---vL~Ge~Y~AtC~va~YY  247 (466)
T PHA03270        181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF----------RRPSLSIRPHA---VLEGEPFGATCVAANYY  247 (466)
T ss_pred             cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe----------cCCcccccCCc---cccCCCceEEEEeeeec
Confidence            4679999999999999999877665532 2233455555          56765554444   78899999999998754


Q ss_pred             CCc--eeEEEeCCCCCCC-CCCcee-E-eeCC--CEEEEEEcCCCcc-cCeEEEEEEEcC
Q psy3823         253 QAQ--YFTWAFNNSDTAP-RPLTSY-S-IQDG--STSVARYTPTSEL-EYGTLLCWARNE  304 (365)
Q Consensus       253 ~~~--~~~W~~~~~~~~~-~~~~~~-~-~~~~--~~s~l~i~~v~~~-d~G~Y~C~a~n~  304 (365)
                      ++.  .+.|+.||..... ...... . ..++  ..|.+.+.....+ ..-..+|.+.=.
T Consensus       248 Pp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~  307 (466)
T PHA03270        248 PGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWH  307 (466)
T ss_pred             CCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEc
Confidence            443  8999999986542 221111 1 2233  2344544443222 234799988633

>TIGR00864 PCC polycystin cation channel protein

Probab=96.38  E-value=2.4  Score=47.66  Aligned_cols=265  Identities=15%  Similarity=0.187  Sum_probs=142.4

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEE--EEEeCCCCCcccE
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC--WARNEQGNQRTPC  100 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~a~~~~~~~~~~~  100 (365)
                      .+..|+.++|.+.....+.. .+.|..++.. -....     .+. .-.-.+     ..-|.|.-  .+.|..+.....+
T Consensus      1878 ~~~~n~~v~fsa~l~~GS~V-tf~w~fGdgs-~~~~t-----~~~-t~~HsY-----~~~G~Y~VtV~A~N~Vs~~~a~~ 1944 (2740)
T TIGR00864      1878 IAAIGEKVEFQILLAAGSAV-NFRLQIGGAA-PEVLQ-----PGP-RFSHSF-----PRVDDHMVNLRAKNEVSCAQANL 1944 (2740)
T ss_pred             cccCCCEEEEEEEecCCCce-EEEEEeCCCC-ceeec-----CCC-eEEeec-----CCCCcEEEEEEEEeccceeeeeE
Confidence            35679999999996555666 9999887643 11100     011 001111     13355655  4456666666666


Q ss_pred             EEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEe
Q psy3823         101 TFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQ  180 (365)
Q Consensus       101 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~  180 (365)
                      .+.|+.+        -..+.+....  . ..+..|+..+|.-.+....+.. +.|+++-+.+.....  .......++..
T Consensus      1945 ~V~Vle~--------V~gL~I~~~c--~-~~~~~g~~~tF~A~v~~g~~V~-f~W~f~~~~~~g~~~--~~~~G~~vty~ 2010 (2740)
T TIGR00864      1945 HIEVLEA--------VRGLQIPDCC--A-AGIATGEEKNFTANVQRGKPVA-FAWTFDLHHLHGDSL--VIHMGKDVSYT 2010 (2740)
T ss_pred             EEEEEEe--------ccceEecCCc--c-cceecCceEEEEEEEecCCceE-EEEEeeecccCCCcc--eeecCCceEEc
Confidence            6666311        1112222111  1 1256789999999887555545 899976433322111  12222222222


Q ss_pred             eecCCCCeEEEEE--EEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeE
Q psy3823         181 SVTRHSGGLYACS--AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT  258 (365)
Q Consensus       181 ~~~~~d~G~Y~C~--~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~  258 (365)
                         ....|.|.-.  |.|..+... ....+.|+          .+...............+..+.+.|.+...+....+.
T Consensus      2011 ---~~~~G~~~I~v~A~N~l~s~n-~t~~i~VQ----------~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~ 2076 (2740)
T TIGR00864      2011 ---AEAAGLLEIQLGAFNALGAEN-ITLQLEAQ----------DALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACH 2076 (2740)
T ss_pred             ---cCCCcEEEEEEEEEcccCccc-ccEEEEEE----------eheeeEEEeecCcceecCceEEEEEEEccCCCcEEEE
Confidence               2468888765  457666533 55566666          2222111111111256688999999986544332499


Q ss_pred             EEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEE--EEcCCccceecEEEEEEcCccccc------------
Q psy3823         259 WAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW--ARNEQGSQRTPCTFHVVKAGECEH------------  324 (365)
Q Consensus       259 W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~--a~n~~g~~~~~~~l~v~~~~~c~~------------  324 (365)
                      |-+.++.........      ..++. .     ...|.|.-.  |.|..........+.|.... |.-            
T Consensus      2077 WDFGDGt~~~~T~~~------~~sHt-Y-----~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl~-C~~P~V~i~~~~~~~ 2143 (2740)
T TIGR00864      2077 WDFGDGSAGQDTDEP------RAEHE-Y-----LHPGDYRVQVNASNLVSFFSAHAEINVQVLA-CEEPEVDVVLALQLA 2143 (2740)
T ss_pred             EEecCCCCccccCCc------eeEEE-e-----cCCccEEEEEEEEcceeeeeeEEEEEEEEec-CCCCCcEeccCceeE
Confidence            988765332221111      11111 1     234777764  55777776666666554332 221            


Q ss_pred             -----------------cCccccEEEEEEEEEcC
Q psy3823         325 -----------------PVAVSHRYVAKLYATNA  341 (365)
Q Consensus       325 -----------------~l~~~~~~~~~~~~~n~  341 (365)
                                       -+.-+..|.|.++..++
T Consensus      2144 i~RSq~~~lEa~V~l~~ci~y~~~y~W~v~~~~~ 2177 (2740)
T TIGR00864      2144 IRRSQPNLLEAHVDLKDCLRYGAEYLWEILRAAS 2177 (2740)
T ss_pred             EEecCcceEEEEEccccccccccEEEEEEEeccc
Confidence                             25568999999988774

Note: this model has been restricted to the amino half because for technical reasons.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.37  E-value=0.015  Score=41.16  Aligned_cols=68  Identities=12%  Similarity=0.182  Sum_probs=41.2

Q ss_pred             ceecCCcEEEEEEEEe-cCC-CCeeEEEeCCeEEeeCCCCce------EEeeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823         131 VLNEGVDIYFDCHIQA-NPP-YKKLIWTHNGITISNNASAGR------IITNQTLVLQSVTRHSGGLYACSAINSQ  198 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~-~p~-~~~i~W~~~~~~l~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  198 (365)
                      .+.+|..+++.|.+.+ +|. ...+.|+++...+....-...      ......+++.....++...|+|+|.-..
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l   86 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHI   86 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEee
Confidence            4578999999999985 343 234889987666543211100      0112345555545555569999987443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02633 hypothetical protein; Provisional

Probab=96.30  E-value=0.011  Score=37.43  Aligned_cols=40  Identities=15%  Similarity=0.159  Sum_probs=33.2

Q ss_pred             EEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCccc
Q psy3823         283 VARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGEC  322 (365)
Q Consensus       283 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~c  322 (365)
                      .|.|.++..+|+|.|.|...|..-....++.|+|-....|
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~~   58 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIES   58 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecccc
Confidence            3788899999999999999998877888888888665433

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.27  E-value=0.047  Score=40.00  Aligned_cols=72  Identities=8%  Similarity=-0.087  Sum_probs=46.3

Q ss_pred             CceEEEEecCCcEEEEEEeC--CCCCcceEEEEeCCCcCC------------C--CCCce--eEecCCeEEEEEEccCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVD--ANPQAQYFTWAFNNSGTA------------P--RPLTS--YSIQDGSTSVARYTPTSE   79 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~--~~p~~~~v~W~~~~~~~l------------~--~~~~~--~~~~~~~~~~l~i~~~~~   79 (365)
                      ++....+..|+.++|.|+..  .......+.|+|.....+            .  .....  ....+...-.|.+.+++.
T Consensus         4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a   83 (115)
T cd05721           4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA   83 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence            34556678899999999953  344412899998644311            0  00110  112334445799999999


Q ss_pred             CCCeEEEEEE
Q psy3823          80 LEYGTLLCWA   89 (365)
Q Consensus        80 ~d~G~Y~C~a   89 (365)
                      +|++.|.|..
T Consensus        84 ~DTa~Y~Ca~   93 (115)
T cd05721          84 NQTDIYFCKI   93 (115)
T ss_pred             HHCeEEEEEe
Confidence            9999999963

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG1480|consensus

Probab=96.05  E-value=0.0038  Score=59.48  Aligned_cols=78  Identities=17%  Similarity=0.246  Sum_probs=58.8

Q ss_pred             EEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-cc
Q psy3823          22 YGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-TP   99 (365)
Q Consensus        22 ~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~   99 (365)
                      -.|..+..+.|.|. ..+.|.+ .+.|++++.. +..........+.   .+++.++...|.|+|+|+|.|..+... ..
T Consensus       139 q~V~~~s~~~l~cr~pe~~paa-e~~w~k~e~~-~~pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~r~~~~  213 (909)
T KOG1480|consen  139 QEVQEETTLQLPCRPPEGDPKA-EVEWLKNEVV-IDPDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAKRKSDP  213 (909)
T ss_pred             heecccccccccccCcccchhh-hhhccccCCC-CCccccchhhhcC---Cccccchhhhhcccceeeeehhhccccccc
Confidence            34677899999999 8888999 9999999987 6553332222333   688999999999999999998777655 44


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      +.+.+
T Consensus       214 ~~v~v  218 (909)
T KOG1480|consen  214 ATVQV  218 (909)
T ss_pred             eEEEE
Confidence            44444

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.95  E-value=0.011  Score=44.32  Aligned_cols=79  Identities=15%  Similarity=0.249  Sum_probs=43.2

Q ss_pred             EecCCcEEEEEEeCCCC----CcceEEEEeCCCcCCC---CCCcee----------EecCCeEEEEEEccCCCCCCeEEE
Q psy3823          24 ALRNEQVLVSCTVDANP----QAQYFTWAFNNSGTAP---RPLTSY----------SIQDGSTSVARYTPTSELEYGTLL   86 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~p----~~~~v~W~~~~~~~l~---~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~   86 (365)
                      ..-+++|.|+|.+...+    ....+.|.+++.. +-   ......          ........+|.+.....- .|+|+
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~-If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKD-IFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEE-EEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeE-EEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            46799999999965311    1227999998875 31   111100          000012225777765443 79999


Q ss_pred             EEEEeCCCCCcccEEEEE
Q psy3823          87 CWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        87 C~a~~~~~~~~~~~~l~V  104 (365)
                      |++.......+..+.|..
T Consensus       102 CeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  102 CEVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEecCCCceEEEEEEE
Confidence            999987776667777765

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA03271 envelope glycoprotein C; Provisional

Probab=95.89  E-value=0.25  Score=44.15  Aligned_cols=121  Identities=14%  Similarity=0.127  Sum_probs=71.9

Q ss_pred             eceEEEeeecCCCCeEEEEEEEcCCCCC-CcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeC
Q psy3823         174 NQTLVLQSVTRHSGGLYACSAINSQGEG-GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP  252 (365)
Q Consensus       174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p  252 (365)
                      +-.|.|.++...++|.|+-...+..... ..+.+.+.+..         -+|.+......   +..|+...-.|.+..+-
T Consensus       206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~---------RPPsVsV~a~P---VL~Ge~YkAtC~vAnYY  273 (490)
T PHA03271        206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ---------RPASVDVLAPP---VLSGENYKASCIVRHFY  273 (490)
T ss_pred             eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe---------cCCCccccCCc---cccCCCceEEEEeeeec
Confidence            3468899999999997755555544332 11334445541         34445444444   78899999999998764


Q ss_pred             CCc--eeEEEeCCCCCCCCCCcee-E---ee-CC--CEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         253 QAQ--YFTWAFNNSDTAPRPLTSY-S---IQ-DG--STSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       253 ~~~--~~~W~~~~~~~~~~~~~~~-~---~~-~~--~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      ++.  .+.|+.||........... .   .. ++  ..+.|.+-+...+..-..+|.+.=..+
T Consensus       274 PP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd  336 (490)
T PHA03271        274 PPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG  336 (490)
T ss_pred             CCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence            443  8999999886644332211 1   11 11  234454444333445589998874433

>PHA03273 envelope glycoprotein C; Provisional

Probab=95.87  E-value=0.18  Score=45.68  Aligned_cols=117  Identities=18%  Similarity=0.219  Sum_probs=73.1

Q ss_pred             ceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC
Q psy3823         175 QTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA  254 (365)
Q Consensus       175 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  254 (365)
                      ..|.|..++...+|.|+=...+..+... ...+++|...        .+|.+......   +..|+...-.|.+..+-++
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~-~~~~VtV~~y--------r~Psvsv~~~P---vL~Ge~y~A~C~aa~YYPp  265 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLV-NSTSVTVSTY--------NAPLVDLSVHP---SLKGENYRAVCVVASYFPH  265 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCcee-eeeEEEEEEe--------cCCcccccCCc---cccCCCceEEEEeeeecCC
Confidence            4599999999999999855545444222 2344444310        56665544444   7899999999999875443


Q ss_pred             c--eeEEEeCCCCCCC-CC-Cc-eeEeeCCC---EEEEEEcCCCc-ccCeEEEEEEEc
Q psy3823         255 Q--YFTWAFNNSDTAP-RP-LT-SYSIQDGS---TSVARYTPTSE-LEYGTLLCWARN  303 (365)
Q Consensus       255 ~--~~~W~~~~~~~~~-~~-~~-~~~~~~~~---~s~l~i~~v~~-~d~G~Y~C~a~n  303 (365)
                      .  .+.|+.||..... .. .. .....++.   .|.|.+..... +..-..+|.+.=
T Consensus       266 ~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W  323 (486)
T PHA03273        266 SSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEW  323 (486)
T ss_pred             CceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEE
Confidence            3  8999999986652 21 11 12233343   35565555433 335689998863

>PHA03042 CD47-like protein; Provisional

Probab=95.62  E-value=0.068  Score=44.92  Aligned_cols=71  Identities=17%  Similarity=0.285  Sum_probs=46.7

Q ss_pred             ecCCcEEEEEEeCCCC-----CcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          25 LRNEQVLVSCTVDANP-----QAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        25 ~~G~~~~l~C~~~~~p-----~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      .-++++.++|..+. +     ....+.|..++.. +-....     . +..+|.+... .+-.|+|+|+|.+.....+..
T Consensus        29 ~CN~TV~IpC~v~n-~~~~ni~~~~V~Wkf~~~~-If~~n~-----t-n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~   99 (286)
T PHA03042         29 TCNKTIVIVCNLNL-LIYYNISNIHINWKFNNKV-IFKKNN-----T-NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNT   99 (286)
T ss_pred             ecCceEEEEeecCC-hhhcCccceEEEEEeCCee-EEEecC-----C-cceEEEEecc-ccCCCceeEEEeecccCccEE
Confidence            56899999999653 3     2227999999887 322111     1 2245665433 335799999999877666666


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      ++|.-
T Consensus       100 IeLk~  104 (286)
T PHA03042        100 IELQY  104 (286)
T ss_pred             EEEEE
Confidence            66664

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.46  E-value=0.016  Score=43.36  Aligned_cols=76  Identities=17%  Similarity=0.272  Sum_probs=40.5

Q ss_pred             cCCcEEEEEEEEe---cC-CCCeeEEEeCCeEEeeCCCCceEE---------------eeceEEEeeecCCCCeEEEEEE
Q psy3823         134 EGVDIYFDCHIQA---NP-PYKKLIWTHNGITISNNASAGRII---------------TNQTLVLQSVTRHSGGLYACSA  194 (365)
Q Consensus       134 ~g~~v~l~C~~~~---~p-~~~~i~W~~~~~~l~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~  194 (365)
                      -+++|.|.|.+..   .+ ....++|.++|..+-.........               .+.+|.+...+.- .|+|+|++
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV  104 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV  104 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence            4789999998863   11 123389999998875322221111               1234666664433 79999999


Q ss_pred             EcCCCCCCcccEEEEEe
Q psy3823         195 INSQGEGGSTPFDLNIN  211 (365)
Q Consensus       195 ~~~~~~~~s~~~~l~v~  211 (365)
                      ........ ..+.|...
T Consensus       105 t~~~~ege-~~i~Lk~~  120 (130)
T PF08204_consen  105 TELSREGE-TTIELKYR  120 (130)
T ss_dssp             EETTEEEE-EEEEEEE-
T ss_pred             EecCCCce-EEEEEEEE
Confidence            86654333 34555543

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=95.24  E-value=0.26  Score=36.14  Aligned_cols=67  Identities=7%  Similarity=-0.062  Sum_probs=43.3

Q ss_pred             eecCceEEEEEEEeeeCCCc--eeEEEeCCCCC------------CC--CCCce--eEeeCCCEEEEEEcCCCcccCeEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ--YFTWAFNNSDT------------AP--RPLTS--YSIQDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~--~~~W~~~~~~~------------~~--~~~~~--~~~~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      +..|+.++|+|.+.+.....  .+.|.+.....            -.  ...+.  ....+...-.|.+.+++.+|.+.|
T Consensus        10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y   89 (115)
T cd05721          10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIY   89 (115)
T ss_pred             EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEE
Confidence            77888999999997654332  58888743221            00  00111  113334456799999999999999


Q ss_pred             EEEEE
Q psy3823         298 LCWAR  302 (365)
Q Consensus       298 ~C~a~  302 (365)
                      .|...
T Consensus        90 ~Ca~e   94 (115)
T cd05721          90 FCKIE   94 (115)
T ss_pred             EEEee
Confidence            99764

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.04  E-value=0.059  Score=45.16  Aligned_cols=51  Identities=12%  Similarity=0.097  Sum_probs=39.5

Q ss_pred             CCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          39 NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        39 ~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      ..+| .+.|..++...++..........|   .|.+.+...+++|.|+|......
T Consensus        10 ~iDP-~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   10 LIDP-TYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             cCCC-ceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence            4577 999999877635554444444556   79999999999999999988755

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.98  E-value=0.16  Score=42.58  Aligned_cols=50  Identities=12%  Similarity=0.154  Sum_probs=36.9

Q ss_pred             CCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         252 PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       252 p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      ..|. +.|..+++....+.....+...|.   |.+.+..+.++|.|+|......
T Consensus        11 iDP~-y~W~GP~g~~l~gn~~~nIT~TG~---L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPT-YLWTGPNGKPLSGNSYVNITETGK---LMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCc-eEEECCCCcccCCCCeEEEccCce---EEeeccccccCCceEEEEEEEe
Confidence            4576 999987765544444445555553   9999999999999999997644

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03042 CD47-like protein; Provisional

Probab=94.16  E-value=0.27  Score=41.42  Aligned_cols=72  Identities=18%  Similarity=0.303  Sum_probs=45.7

Q ss_pred             eecCceEEEEEEEeeeC----CCceeEEEeCCCCCCCCCCceeEeeCC-CEEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823         236 ALRNEQVLVSCTVDANP----QAQYFTWAFNNSDTAPRPLTSYSIQDG-STSVARYTPTSELEYGTLLCWARNEQGSQRT  310 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p----~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~  310 (365)
                      ..-++++.+.|.++..-    ...++.|.+++.....        .++ ..+.|.+. -...-.|+|+|+|.+.....+.
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~--------~n~tn~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~   98 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFK--------KNNTNTSSLKFN-FSKNLSGNYTCEAINKFNKIKN   98 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEE--------ecCCcceEEEEe-ccccCCCceeEEEeecccCccE
Confidence            55679999999997531    1126999998763211        112 22345443 3344589999999987776666


Q ss_pred             cEEEEE
Q psy3823         311 PCTFHV  316 (365)
Q Consensus       311 ~~~l~v  316 (365)
                      .+.++-
T Consensus        99 ~IeLk~  104 (286)
T PHA03042         99 TIELQY  104 (286)
T ss_pred             EEEEEE
Confidence            555543

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=94.11  E-value=4.2  Score=36.51  Aligned_cols=161  Identities=14%  Similarity=0.118  Sum_probs=91.4

Q ss_pred             eEEEEecCCcEEEEEE--eCCCCCcceEEEEeCCCcCCCC-----------------CCceeE------ecCCeEEEEEE
Q psy3823          20 RIYGALRNEQVLVSCT--VDANPQAQYFTWAFNNSGTAPR-----------------PLTSYS------IQDGSTSVARY   74 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~--~~~~p~~~~v~W~~~~~~~l~~-----------------~~~~~~------~~~~~~~~l~i   74 (365)
                      ..+.+..|..+.|.|.  .-++-.....+|+--+-+ +..                 ......      ..+...++|+|
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~-~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTI  350 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFE-IGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTI  350 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCc-ccceeEEEEecceeecccccCCceEEEEecccccchhhceEEe
Confidence            4567778999999998  334443347899876544 221                 011111      12335678999


Q ss_pred             ccCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecC-CcEEEEEEEEec-CCCCe
Q psy3823          75 TPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEG-VDIYFDCHIQAN-PPYKK  152 (365)
Q Consensus        75 ~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g-~~v~l~C~~~~~-p~~~~  152 (365)
                      .+++-...|.|+|.|.......+..--|.|           .-.+...        -..+| ......|-+-.. ..|..
T Consensus       351 kka~I~N~GCY~~~a~~g~~~~ec~~Cl~V-----------~d~V~f~--------W~~e~~n~T~V~Cyv~sy~~kp~s  411 (500)
T PHA02914        351 KKAHINNAGCYEAQAFMGKFKEECRHCFKV-----------ADHVFFK--------WNTEGDNETKVACYAAQYDMQPFS  411 (500)
T ss_pred             eeEEEEcCCceEEEEecCcchhhhhhheEe-----------ccEEEEE--------EEeccCceEEEEEEEEecccCCce
Confidence            999999999999999865443333333444           1122221        12254 345567877655 44544


Q ss_pred             eEEEeCCeEEeeCCCCce------EEe---eceEEEeeecCCC-CeEEEEEEEcCCCC
Q psy3823         153 LIWTHNGITISNNASAGR------IIT---NQTLVLQSVTRHS-GGLYACSAINSQGE  200 (365)
Q Consensus       153 i~W~~~~~~l~~~~~~~~------~~~---~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  200 (365)
                      +.|..+|.......-...      ...   ...+.|.+-...| --.-.|+..-..+.
T Consensus       412 i~wkvnGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y  469 (500)
T PHA02914        412 ILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY  469 (500)
T ss_pred             eEEEEccEEecCeecCcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence            899988866543211111      111   2356666655555 34566776654443

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=94.07  E-value=2.8  Score=34.40  Aligned_cols=133  Identities=13%  Similarity=0.203  Sum_probs=63.0

Q ss_pred             CeeEEEeCCeEEeeCCCC--------ceEEeeceEEE-eeecCCCCeEEEEEEEcCCCC-CC---cccEEEEEeeeeecc
Q psy3823         151 KKLIWTHNGITISNNASA--------GRIITNQTLVL-QSVTRHSGGLYACSAINSQGE-GG---STPFDLNINKMVNLI  217 (365)
Q Consensus       151 ~~i~W~~~~~~l~~~~~~--------~~~~~~~~l~i-~~~~~~d~G~Y~C~~~~~~~~-~~---s~~~~l~v~~~~~~~  217 (365)
                      ..+.|+.||.++......        +.....++|.+ .+......-..+|.+.-.... ..   ++...-.|.      
T Consensus         7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy------   80 (211)
T PF02124_consen    7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVY------   80 (211)
T ss_pred             EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccccccee------
Confidence            448899999877632111        11111234445 222333446789998633322 21   112222233      


Q ss_pred             cccCCCCceecCccceeeeecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCCceeE----eeCCCEEEEEEcCCCcc
Q psy3823         218 FNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPLTSYS----IQDGSTSVARYTPTSEL  292 (365)
Q Consensus       218 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~~~~~----~~~~~~s~l~i~~v~~~  292 (365)
                          .+|.+.      .....|.   ..|.+.--|... .+.|..++............    ...+........+++..
T Consensus        81 ----~~P~vs------v~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~  147 (211)
T PF02124_consen   81 ----PKPRVS------VRFEDGY---AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDE  147 (211)
T ss_pred             ----cCCEEE------EEecCCE---EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCcc
Confidence                344332      2133333   348887777552 69999877643111111111    12222233333445444


Q ss_pred             cC-eEEEEEEE
Q psy3823         293 EY-GTLLCWAR  302 (365)
Q Consensus       293 d~-G~Y~C~a~  302 (365)
                      |+ -+|+|.+.
T Consensus       148 ~~~~~YtC~l~  158 (211)
T PF02124_consen  148 DGPVEYTCRLI  158 (211)
T ss_pred             CCceeEEEEEe
Confidence            42 38999886

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>KOG4597|consensus

Probab=93.50  E-value=0.12  Score=46.80  Aligned_cols=95  Identities=19%  Similarity=0.102  Sum_probs=65.4

Q ss_pred             cCCeEee-CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeC---CCcCCCCCCceeEe-cCCeEEEEEEccCCCCCCeE
Q psy3823          10 DEPVCKQ-SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFN---NSGTAPRPLTSYSI-QDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        10 ~~p~~~~-~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~---~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~   84 (365)
                      ++|.+.. ..+....+..|++..++|.+.|.|.+ .|+|.+-   ....+......... .-...-.|.|-+....|+|.
T Consensus       193 ~e~~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w  271 (560)
T KOG4597|consen  193 FEPSCALVDCPAEWFVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGW  271 (560)
T ss_pred             CCCCcccccCcchhhcccchhhcccccccCCcCc-eeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCc
Confidence            3443333 23455667899999999998899999 9999652   22201111111111 11233479999999999999


Q ss_pred             EEEEEEeCCCCCcccEEEEEE
Q psy3823          85 LLCWARNEQGNQRTPCTFHVV  105 (365)
Q Consensus        85 Y~C~a~~~~~~~~~~~~l~V~  105 (365)
                      |+|.+++..|.....+.+.+.
T Consensus       272 ~tCs~rcg~g~~~rdv~c~s~  292 (560)
T KOG4597|consen  272 YTCSARCGAGFLRRDVPCSSV  292 (560)
T ss_pred             eeeccccccceeeccceeeee
Confidence            999999999988888888773

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=92.54  E-value=0.64  Score=41.00  Aligned_cols=65  Identities=12%  Similarity=0.163  Sum_probs=38.1

Q ss_pred             eEEEEEEEeee-CCCceeEEEeC---------C---CCCCCCC----Cc------eeEeeCC-CEEEEEEcCCCcccCeE
Q psy3823         241 QVLVSCTVDAN-PQAQYFTWAFN---------N---SDTAPRP----LT------SYSIQDG-STSVARYTPTSELEYGT  296 (365)
Q Consensus       241 ~~~l~C~~~~~-p~~~~~~W~~~---------~---~~~~~~~----~~------~~~~~~~-~~s~l~i~~v~~~d~G~  296 (365)
                      .++|+|.+.|+ |....+.|.++         |   .......    ..      ..-..+| +.....-..+..++...
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~v~~~~~~~  295 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVRVPTDMSNQ  295 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEEeCCCCCCC
Confidence            57999999985 55557999998         3   1001100    00      1112353 54443333555667778


Q ss_pred             EEEEEEcCC
Q psy3823         297 LLCWARNEQ  305 (365)
Q Consensus       297 Y~C~a~n~~  305 (365)
                      |+|++.+..
T Consensus       296 Y~C~V~Hsg  304 (338)
T PHA02865        296 IVCVVFHST  304 (338)
T ss_pred             cEEEEEeCC
Confidence            999998753

>KOG4597|consensus

Probab=92.34  E-value=0.2  Score=45.52  Aligned_cols=81  Identities=19%  Similarity=0.064  Sum_probs=60.5

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeC---CCCCCCCCCceeEe--eCCCEEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFN---NSDTAPRPLTSYSI--QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT  310 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~---~~~~~~~~~~~~~~--~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~  310 (365)
                      +..+++..++|.+.|.+.+. +.|.+-   +..+... +...+.  .-.++..|.|-+....|+|-|+|.+.|.+|...+
T Consensus       208 vg~wetcS~tCg~~G~q~r~-V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~r  285 (560)
T KOG4597|consen  208 VGDWETCSSTCGVQGRQYRV-VTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRR  285 (560)
T ss_pred             cccchhhcccccccCCcCce-eeeehhhccccceeec-CccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeec
Confidence            78899999999999999998 999862   2222222 221111  1123456889999999999999999999999999


Q ss_pred             cEEEEEEc
Q psy3823         311 PCTFHVVK  318 (365)
Q Consensus       311 ~~~l~v~~  318 (365)
                      ++.+.+..
T Consensus       286 dv~c~s~~  293 (560)
T KOG4597|consen  286 DVPCSSVK  293 (560)
T ss_pred             cceeeeec
Confidence            99987653

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=92.09  E-value=1.1  Score=31.50  Aligned_cols=71  Identities=18%  Similarity=0.373  Sum_probs=44.3

Q ss_pred             EEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEE
Q psy3823          30 VLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFH  103 (365)
Q Consensus        30 ~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~  103 (365)
                      +.-.|. ++|+|++ .++|.-+-.. .. ........++   -.+.+.+.+....|....+|.+.+..-.-...+.|.
T Consensus        23 ~VA~CiSa~GrPpa-~ItW~t~l~G-~~-etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~   97 (98)
T cd05890          23 LVATCVSANGKPPS-VVRWDTRLKG-EA-EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN   97 (98)
T ss_pred             EEEEEEcCCCcCCc-EeEEEccCCC-ce-eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence            445698 9999999 9999854222 11 0111112233   234567778888899999999998644444555554

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=90.77  E-value=1  Score=39.85  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=18.6

Q ss_pred             cEEEEEE-eCCCCCcceEEEEeC
Q psy3823          29 QVLVSCT-VDANPQAQYFTWAFN   50 (365)
Q Consensus        29 ~~~l~C~-~~~~p~~~~v~W~~~   50 (365)
                      .++|.|. .+..|....++|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            5899999 556687779999999

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=90.45  E-value=0.39  Score=34.44  Aligned_cols=34  Identities=18%  Similarity=0.133  Sum_probs=25.9

Q ss_pred             EEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         282 SVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       282 s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      ..|.|+.++.+|+|.|.-++++..|.. ....++|
T Consensus        71 laLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqV  104 (108)
T PF11465_consen   71 LALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQV  104 (108)
T ss_dssp             TEEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEE
T ss_pred             ceEEEeecCcccCceEEEEEEcCCCcE-EEEEEEE
Confidence            359999999999999999999999987 3344444

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=90.42  E-value=0.9  Score=32.62  Aligned_cols=38  Identities=21%  Similarity=0.469  Sum_probs=29.3

Q ss_pred             eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         173 TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       173 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      .+.+|.|+.++..|+|.|.-++.+..|......+.+.|
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            37899999999999999999999998876655555444

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=90.35  E-value=1.1  Score=31.48  Aligned_cols=68  Identities=12%  Similarity=0.129  Sum_probs=43.1

Q ss_pred             CceEEEEecCCcEEEEEEeC-CC----CCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVD-AN----PQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~-~~----p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      .+....+..|++++..|... +-    ... .+.|..++.. ++..+....  +.+.+.+++.+......-.|-|..
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~-~I~Wkln~~~-iP~~qy~~i--n~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNAS-QIVWKLNGEK-IPGSQYRVI--NDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STT-CEEEECSSCE-STCGCEEEE--STTEEEEEESS--SSEEEEEEEEE
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccc-eEEEEECCEE-CChhHccee--CCeEEEEEEccCCCCCceEEEEEE
Confidence            34445578899999999933 22    334 8999999887 877665433  333367888877666656677763

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=90.11  E-value=0.2  Score=34.41  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=20.9

Q ss_pred             cCccccEEEEEEEEEcCCCCCce
Q psy3823         325 PVAVSHRYVAKLYATNAKGAGPM  347 (365)
Q Consensus       325 ~l~~~~~~~~~~~~~n~~g~s~~  347 (365)
                      +|.|+..|.|+|.|.|..|.|++
T Consensus        62 ~L~p~t~Y~~~v~a~~~~g~g~~   84 (85)
T PF00041_consen   62 GLQPGTTYEFRVRAVNSDGEGPP   84 (85)
T ss_dssp             SCCTTSEEEEEEEEEETTEEEEE
T ss_pred             cCCCCCEEEEEEEEEeCCcCcCC
Confidence            78999999999999999997764

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>KOG0613|consensus

Probab=88.60  E-value=1.3  Score=45.74  Aligned_cols=82  Identities=11%  Similarity=-0.053  Sum_probs=57.3

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC-ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL-TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      ...+..+++.|...+.+.+..+.|+.++........ ........+...+.|..+...+.+.|.|.|.|..|........
T Consensus       346 a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~  425 (1205)
T KOG0613|consen  346 ARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAES  425 (1205)
T ss_pred             cccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchh
Confidence            566788999999999877766999987653322221 1112233444568888999999999999999999976544444


Q ss_pred             EEE
Q psy3823         315 HVV  317 (365)
Q Consensus       315 ~v~  317 (365)
                      +|.
T Consensus       426 ~vs  428 (1205)
T KOG0613|consen  426 TVS  428 (1205)
T ss_pred             hcc
Confidence            443

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=87.92  E-value=14  Score=30.47  Aligned_cols=131  Identities=18%  Similarity=0.286  Sum_probs=64.6

Q ss_pred             ceEEEEeCCCcCCCCCCce-e--EecCC---eEEEEEE-ccCCCCCCeEEEEEEEe-CCCCCc----ccEEEEEEecccc
Q psy3823          43 QYFTWAFNNSGTAPRPLTS-Y--SIQDG---STSVARY-TPTSELEYGTLLCWARN-EQGNQR----TPCTFHVVKAGEC  110 (365)
Q Consensus        43 ~~v~W~~~~~~~l~~~~~~-~--~~~~~---~~~~l~i-~~~~~~d~G~Y~C~a~~-~~~~~~----~~~~l~V~~~~~~  110 (365)
                      ..++|+.|+.. +...... .  ...++   ..++|.+ .+...+..=..+|.+.= ......    ....-.|      
T Consensus         7 ~~~~Wf~dg~~-v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~V------   79 (211)
T PF02124_consen    7 VRFRWFEDGNP-VEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSV------   79 (211)
T ss_pred             EEEEEEECCEe-CCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccce------
Confidence            48999999987 6532211 1  11223   3345555 33333444678998753 222222    2333334      


Q ss_pred             CCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC-CeeEEEeCCeEEeeCCCCceEEe-----eceEEEeeecC
Q psy3823         111 EHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY-KKLIWTHNGITISNNASAGRIIT-----NQTLVLQSVTR  184 (365)
Q Consensus       111 ~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~i~W~~~~~~l~~~~~~~~~~~-----~~~l~i~~~~~  184 (365)
                         +.+|.+.+...         +|   ...|.+.=-|.. ..+.|.-++.... .........     .+...|.....
T Consensus        80 ---y~~P~vsv~F~---------~g---~AVC~A~CVP~~~v~l~W~v~d~~~~-~~~~~~~~g~C~~~pglvnirs~~p  143 (211)
T PF02124_consen   80 ---YPKPRVSVRFE---------DG---YAVCTARCVPRGNVTLRWSVGDDPSP-APAATEITGVCAEHPGLVNIRSRRP  143 (211)
T ss_pred             ---ecCCEEEEEec---------CC---EEEEEcceeeCCCeEEEEEECCccCC-CCCceeecCcccCCcceeEeecccC
Confidence               67888777532         22   334655433322 4599997665431 111111111     12333333322


Q ss_pred             --CCCe--EEEEEEEc
Q psy3823         185 --HSGG--LYACSAIN  196 (365)
Q Consensus       185 --~d~G--~Y~C~~~~  196 (365)
                        ...|  .|+|.+..
T Consensus       144 ls~~~~~~~YtC~l~G  159 (211)
T PF02124_consen  144 LSDEDGPVEYTCRLIG  159 (211)
T ss_pred             CCccCCceeEEEEEee
Confidence              3335  89999874

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03283 envelope glycoprotein E; Provisional

Probab=87.49  E-value=9.1  Score=35.83  Aligned_cols=86  Identities=10%  Similarity=0.125  Sum_probs=53.1

Q ss_pred             eEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCC------------eEEEEcCCccCccceecC
Q psy3823          68 STSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKP------------SVQIKLGRNLNASVLNEG  135 (365)
Q Consensus        68 ~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p------------~~~~~~~~~~~~~~~~~g  135 (365)
                      ..+.|.|.+++.+++|.|+-..++..+.....+.|+|.....-..+ .+|            .+.+.   +........|
T Consensus       132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~-~Pp~~~pv~P~~h~a~f~v~---nYhS~vf~~G  207 (542)
T PHA03283        132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQT-PPAPLVPQVPARHHTDFHVR---GYHSRVYSPG  207 (542)
T ss_pred             CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCC-CCCCccccCCccCCceEEEe---cceeEEecCC
Confidence            3457999999999999999999987663346677777431110000 011            12221   1244567789


Q ss_pred             CcEEEEEEEEecC----CCCeeEEEe
Q psy3823         136 VDIYFDCHIQANP----PYKKLIWTH  157 (365)
Q Consensus       136 ~~v~l~C~~~~~p----~~~~i~W~~  157 (365)
                      +++.+.-......    -...|.|+.
T Consensus       208 Dtf~lsi~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        208 DSFDLSVHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             CceeEeEEEeeccCCCCceEEEEEEE
Confidence            9988877666432    223478986

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=85.12  E-value=1.3  Score=31.11  Aligned_cols=65  Identities=18%  Similarity=0.366  Sum_probs=37.6

Q ss_pred             cceecCCcEEEEEEEEec----CCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQAN----PPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSA  194 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~----p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  194 (365)
                      ..+..|++++..|.....    .....|.|..|+..++......+....+.+++.+.....+-.|-|..
T Consensus        13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            357889999999988722    23444999998886654332211122356666666655555666653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=84.25  E-value=8  Score=26.44  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=22.3

Q ss_pred             EEEcCCCcccCeEEEEEE-EcCCccceecEEEEE
Q psy3823         284 ARYTPTSELEYGTLLCWA-RNEQGSQRTPCTFHV  316 (365)
Q Consensus       284 l~i~~v~~~d~G~Y~C~a-~n~~g~~~~~~~l~v  316 (365)
                      ........+|+|.+.|.| .+..-.....+.|.|
T Consensus        45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             EEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            445566679999999999 665555555555444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=84.16  E-value=7.3  Score=26.64  Aligned_cols=36  Identities=11%  Similarity=0.055  Sum_probs=22.8

Q ss_pred             eEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          44 YFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        44 ~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      .+.|+..+.. ..       ....   .+........|+|.++|.|.
T Consensus        28 ~~~l~~~~~k-~~-------~~~~---~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   28 SLFLENPGKK-SL-------ETKK---LVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             EEEEECSSCE-EE-------EESS---EEEEESBTCGGSEEEEEEEE
T ss_pred             hheeeccCcc-cc-------ccce---EEEEecCCCCCCEEEEEEEc
Confidence            6777666554 11       1222   44555666779999999995

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03112 IL-18 binding protein; Provisional

Probab=84.05  E-value=7.8  Score=29.53  Aligned_cols=78  Identities=13%  Similarity=0.263  Sum_probs=46.3

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCC-CCCCCCCc------------eeEeeCCCEEEEEEcCCCcc-cCeEEEEE
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNS-DTAPRPLT------------SYSIQDGSTSVARYTPTSEL-EYGTLLCW  300 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~-~~~~~~~~------------~~~~~~~~~s~l~i~~v~~~-d~G~Y~C~  300 (365)
                      ...++++.|+|.+-+. |.-..+.|..++. ........            .+...++....|.+.+++.+ +.-.++|.
T Consensus        35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV  114 (141)
T PHA03112         35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV  114 (141)
T ss_pred             cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence            4568999999999864 6544589996652 22111111            11122233455666666644 34489998


Q ss_pred             EEcCCccceecEE
Q psy3823         301 ARNEQGSQRTPCT  313 (365)
Q Consensus       301 a~n~~g~~~~~~~  313 (365)
                      .....|.....+.
T Consensus       115 L~D~~~~~k~~ii  127 (141)
T PHA03112        115 LMDLDGPIKKSII  127 (141)
T ss_pred             EecCCchhhHHhH
Confidence            8888776655443

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=83.09  E-value=3.4  Score=38.52  Aligned_cols=89  Identities=10%  Similarity=0.078  Sum_probs=15.2

Q ss_pred             eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeec-ccc---cCCCCc-----eecCccceeeeecCceEEE
Q psy3823         174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNL-IFN---SIDEPV-----CKQSQQRIYGALRNEQVLV  244 (365)
Q Consensus       174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~-~~~---~~~~p~-----~~~~~~~~~~~~~g~~~~l  244 (365)
                      .+.|.|.+++..|+|.|+-...+..+......+.|.|...... ...   .+..|.     +............|+++.|
T Consensus        88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~  167 (439)
T PF02480_consen   88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL  167 (439)
T ss_dssp             ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred             CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence            4679999999999999999998777766555677777632110 000   001111     1111222233678999998


Q ss_pred             EEEEeeeCCC--c---eeEEEeC
Q psy3823         245 SCTVDANPQA--Q---YFTWAFN  262 (365)
Q Consensus       245 ~C~~~~~p~~--~---~~~W~~~  262 (365)
                      .-.+......  .   .+.|++-
T Consensus       168 ~v~l~~~~~d~~~f~~~i~W~~~  190 (439)
T PF02480_consen  168 SVHLQSEAHDDPPFSLEIDWYYM  190 (439)
T ss_dssp             --EEEEEESSS--EEEEEEEEEE
T ss_pred             eEEEEeccCCCCCeeEEEEEEEe
Confidence            8888654332  1   6999864

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PHA03286 envelope glycoprotein E; Provisional

Probab=82.54  E-value=41  Score=31.10  Aligned_cols=89  Identities=13%  Similarity=0.086  Sum_probs=54.1

Q ss_pred             eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeee--e-ecccccCCCCc-----eecCccceeeeecCceEEEE
Q psy3823         174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKM--V-NLIFNSIDEPV-----CKQSQQRIYGALRNEQVLVS  245 (365)
Q Consensus       174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~--~-~~~~~~~~~p~-----~~~~~~~~~~~~~g~~~~l~  245 (365)
                      .+.|.|.+++.+++|.|+--..|..+......+.|.|...  . ++..+.+..|.     +............|+++.+.
T Consensus       126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS  205 (492)
T PHA03286        126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS  205 (492)
T ss_pred             CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence            3679999999999999999998877776656677777421  1 11111111221     11222223336789999877


Q ss_pred             EEEeee--CCCc--eeEEEeC
Q psy3823         246 CTVDAN--PQAQ--YFTWAFN  262 (365)
Q Consensus       246 C~~~~~--p~~~--~~~W~~~  262 (365)
                      -.....  ..+-  .+.|++-
T Consensus       206 v~l~~~~~d~~Fsl~i~W~y~  226 (492)
T PHA03286        206 VTAHLTNWAGAFSLEFRVLFL  226 (492)
T ss_pred             EEEeecccCCCceEEEEEEEe
Confidence            766522  1111  6999864

>PHA03283 envelope glycoprotein E; Provisional

Probab=81.02  E-value=50  Score=31.17  Aligned_cols=88  Identities=11%  Similarity=0.083  Sum_probs=51.2

Q ss_pred             eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeee-----cccccCCCC-----ceecCccceeeeecCceEE
Q psy3823         174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVN-----LIFNSIDEP-----VCKQSQQRIYGALRNEQVL  243 (365)
Q Consensus       174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~-----~~~~~~~~p-----~~~~~~~~~~~~~~g~~~~  243 (365)
                      .+.|.|.+++.+++|.|+--..+..+ .....+.|+|..+..     |.-..+..|     .+....-.......|+++.
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~  211 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD  211 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence            46799999999999999998887655 443556677763111     000000011     1111121222267899998


Q ss_pred             EEEEEeeeC-CCc---eeEEEeC
Q psy3823         244 VSCTVDANP-QAQ---YFTWAFN  262 (365)
Q Consensus       244 l~C~~~~~p-~~~---~~~W~~~  262 (365)
                      +.-...... .+.   .+.|++.
T Consensus       212 lsi~l~s~~~d~~fs~~i~Wyy~  234 (542)
T PHA03283        212 LSVHLESDIGDPSFSATIDWYYM  234 (542)
T ss_pred             EeEEEeeccCCCCceEEEEEEEe
Confidence            877665432 221   6999864

>PHA03282 envelope glycoprotein E; Provisional

Probab=80.56  E-value=49  Score=30.75  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCc-ccEEEEEe
Q psy3823         170 RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGS-TPFDLNIN  211 (365)
Q Consensus       170 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s-~~~~l~v~  211 (365)
                      ....|.+|.|.+++..|+|.|+-.+.+....... ..+.|.|.
T Consensus       119 vs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        119 VAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             eeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence            4455789999999999999999987654333222 33445553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		5e-04

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 23/174 (13%)
Query: 31  LVSCTVDANPQA--QYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT-PTSELEYGTLLC 87
           ++ C   +NP     YF    + +G     +T ++   G   + + T P  E   G   C
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE---GVYTC 287
Query: 88  WARNEQGN-QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
              N  G  Q+      VV A + E    KP   I         V+ +G D+   C +  
Sbjct: 288 EVDNGVGKPQKHSLKLTVVSAPKYEQ---KPEKVI---------VVKQGQDVTIPCKVTG 335
Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
            P    ++W+HN   +S   +    +T+  LV++ V     G Y C A N  G+
Sbjct: 336 LPA-PNVVWSHNAKPLSGGRAT---VTDSGLVIKGVKNGDKGYYGCRATNEHGD 385

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-23
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-22
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-22
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-19
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-16
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-16
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-19
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-14
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-19
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-12
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-18
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-18
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-17
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-15
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-17
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-17
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-11
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-16
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	7e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-10
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-16
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-16
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-07
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-16
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-13
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-15
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-15
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-14
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-12
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-14
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-10
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-13
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-13
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-13
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-10
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-13
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	5e-13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	5e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-13
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-08
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-07
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	8e-13
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-07
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-12
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-12
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-12
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-09
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-12
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-11
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-12
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	7e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-12
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-12
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-12
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-12
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-12
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-11
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-11
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-09
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-11
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-09
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-11
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-10
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	6e-11
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-07
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-11
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-11
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	9e-11
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-08
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-10
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-10
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-06
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-10
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-08
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-08
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-10
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-06
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	5e-10
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-08
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-10
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-09
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	4e-08
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-09
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-09
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-09
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-09
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-09
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-07
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-09
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-09
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-09
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-08
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-09
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-09
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	9e-09
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-08
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-08
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-08
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-08
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-08
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-08
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-08
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-04
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	5e-08
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	5e-08
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-05
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-08
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	7e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-04
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	7e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-04
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-07
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-07
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-07
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-07
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-07
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	5e-07
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	6e-07
2ens_A	96	Advanced glycosylation END product-specific recept	7e-07
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	7e-07
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	8e-07
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	7e-04
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-06
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-06
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-06
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-06
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-06
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-05
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-05
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	5e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	6e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-04
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-04
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-04
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	5e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	5e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	6e-04

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 99.4 bits (247), Expect = 4e-23
 Identities = 56/316 (17%), Positives = 92/316 (29%), Gaps = 53/316 (16%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARY-----TPTS 78
               E+  V+CT+     + Y TW   N           S   G  +  R      +   
Sbjct: 223 LREGEEFTVTCTIKDVSSSVYSTWKREN-SQTKLQEKYNSWHHGDFNYERQATLTISSAR 281

Query: 79  ELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDI 138
             + G  +C+A N  G+     T  VV         DK  + I    N    V N+G ++
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLEVV---------DKGFINIFPMINTTVFV-NDGENV 331

Query: 139 YFDCHIQANPPYKKLIWTHNGITISNNA-------SAGRIITNQTLVLQSVTRHSGGLYA 191
                 +A P  +   W +   T ++         +   I     L L  +    GG Y 
Sbjct: 332 DLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYT 391

Query: 192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN 251
               NS                 N+  N+  +P        I    R    ++ C     
Sbjct: 392 FLVSNSDVN---------AAIAFNVYVNT--KP-------EILTYDRLVNGMLQCVAAGF 433

Query: 252 PQAQYFTWAFN-----NSDTAPRPLTSYSIQDGSTSVARYTPTSELE------YGTLLCW 300
           P+     W F          +  P+   ++        +    S ++       GT+ C 
Sbjct: 434 PEPT-IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECK 492

Query: 301 ARNEQGSQRTPCTFHV 316
           A N+ G       F  
Sbjct: 493 AYNDVGKTSAYFNFAF 508

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 62.8 bits (152), Expect = 5e-11
 Identities = 45/304 (14%), Positives = 79/304 (25%), Gaps = 51/304 (16%)

Query: 26  RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTS-VARYTPTSELEYG 83
             +++ + CT           W F           + +  +    +   +YT        
Sbjct: 50  VGDEIRLLCTDPGFV-----KWTFEILDETNENKQNEWITEKAEATNTGKYT-------- 96

Query: 84  TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
              C  ++   N         V   +                        E  D    C 
Sbjct: 97  ---CTNKHGLSNSIY------VFVRDPAKLFLVDRSL----------YGKEDNDTLVRCP 137

Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTR-HSGGLYACSAINSQGE 200
           +         +    G  +  +    R I      ++++SV R +      CS       
Sbjct: 138 LTDPEVTNYSLKGCQGKPLPKD---LRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194

Query: 201 GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA 260
             S  F L +         +          +  Y     E+  V+CT+     + Y TW 
Sbjct: 195 VLSEKFILKVRP-------AFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWK 247

Query: 261 FNNSDTAPRPLTSYSIQDGSTSVARYT----PTSELEYGTLLCWARNEQGSQRTPCTFHV 316
             NS T  +   +           + T         + G  +C+A N  GS     T  V
Sbjct: 248 RENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV 307

Query: 317 VKAG 320
           V  G
Sbjct: 308 VDKG 311

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 37/219 (16%), Positives = 58/219 (26%), Gaps = 51/219 (23%)

Query: 17  SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-SYSIQDGSTSVARYT 75
                      E V +    +A P+ ++  W + N     R  T  +     S + +   
Sbjct: 318 MINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN-----RTFTDKWEDYPKSENESNIR 372

Query: 76  PTSEL--------EYGTLLCWARNEQGNQRTPCTFHV-VKAGECEHPVDKPSVQIKLGRN 126
             SEL        E GT      N   N      F+V V          KP +       
Sbjct: 373 YVSELHLTRLKGTEGGTYTFLVSNSDVNAAI--AFNVYVNT--------KPEI------- 415

Query: 127 LNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT---------- 176
                 +  V+    C     P    + W     T    +++   +  QT          
Sbjct: 416 ---LTYDRLVNGMLQCVAAGFPEP-TIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGK 471

Query: 177 ----LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
                 + S      G   C A N  G+  S  F+    
Sbjct: 472 LVVQSSIDSSAFKHNGTVECKAYNDVGK-TSAYFNFAFK 509

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 98.3 bits (244), Expect = 1e-22
 Identities = 50/339 (14%), Positives = 91/339 (26%), Gaps = 63/339 (18%)

Query: 24  ALRNEQVLVSCTVDANPQAQY-FTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE- 81
               E+++++CT          F W + +S    + L +  ++  S S       S L  
Sbjct: 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM-KKFLSTLTI 294

Query: 82  -------YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNE 134
                   G   C A +    ++      V          +KP V    G          
Sbjct: 295 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVH---------EKPFVAFGSGMESLVEA-TV 344

Query: 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSA 194
           G  +         PP + + W  NGI + +N     I     L +  V+    G Y    
Sbjct: 345 GERVRIPAKYLGYPPPE-IKWYKNGIPLESN---HTIKAGHVLTIMEVSERDTGNYTVIL 400

Query: 195 INSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA 254
            N   +          + +V+L+     +   K     +          ++CTV A P  
Sbjct: 401 TNPISK-------EKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453

Query: 255 QYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEY-------------------- 294
            +  W +   +      +             +    + +                     
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513

Query: 295 ------------GTLLCWARNEQGSQRTPCTFHVVKAGE 321
                           C A N+ G      +FHV +  E
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPE 552

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 85.2 bits (210), Expect = 3e-18
 Identities = 34/302 (11%), Positives = 76/302 (25%), Gaps = 33/302 (10%)

Query: 27  NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT--PTSELEYGT 84
           N  + ++C    +       W + N+ +        +           T       + G 
Sbjct: 46  NTTLQITCRGQRDL-----DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGA 100

Query: 85  LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
             C+ R               ++       D+  V             N+   +   C  
Sbjct: 101 YKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVY--------ITENKNKTVVIPCLG 152

Query: 145 QANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
             +     L   +       + +     + +   + S      G+  C A  +     S 
Sbjct: 153 SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSI 212

Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQY-FTWAFNN 263
            +         ++           S          E+++++CT          F W + +
Sbjct: 213 MY--------IVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPS 264

Query: 264 SDTAPRPLTSYSIQDGSTSVARYTPTSELE--------YGTLLCWARNEQGSQRTPCTFH 315
           S    + L +  ++  S S       S L          G   C A +   +++      
Sbjct: 265 SKHQHKKLVNRDLKTQSGSEM-KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 323

Query: 316 VV 317
           V 
Sbjct: 324 VH 325

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 79.0 bits (194), Expect = 3e-16
 Identities = 47/321 (14%), Positives = 87/321 (27%), Gaps = 45/321 (14%)

Query: 11  EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS 70
             V  Q         +N+ V++ C    +         +             S       
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPE-KRFVPDGNRISWDSKKG- 184

Query: 71  VARYTPTSELEY-GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
                P+  + Y G + C A+    + ++     VV        V  PS  I+L      
Sbjct: 185 --FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL------ 236

Query: 130 SVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----------TLV 178
              + G  +  +C  +          W +      +     R +  Q          TL 
Sbjct: 237 ---SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 293

Query: 179 LQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR 238
           +  VTR   GLY C+A +                   +  +           + +  A  
Sbjct: 294 IDGVTRSDQGLYTCAASSGLMT---------KKNSTFVRVHEKPFVAFGSGMESLVEATV 344

Query: 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YSIQDGST-SVARYTPTSELEYGT 296
            E+V +       P  +   W  N       PL S ++I+ G   ++   +      Y  
Sbjct: 345 GERVRIPAKYLGYPPPE-IKWYKNG-----IPLESNHTIKAGHVLTIMEVSERDTGNY-- 396

Query: 297 LLCWARNEQGSQRTPCTFHVV 317
                 N    ++      +V
Sbjct: 397 -TVILTNPISKEKQSHVVSLV 416

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 78.3 bits (192), Expect = 7e-16
 Identities = 46/359 (12%), Positives = 86/359 (23%), Gaps = 87/359 (24%)

Query: 15  KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARY 74
           K     +          ++CTV A P   +  W +          +             +
Sbjct: 426 KSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEW 485

Query: 75  TPTSELEY--------------------------------GTLLCWARNEQGNQRTPCTF 102
               + +                                     C A N+ G      +F
Sbjct: 486 RSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISF 545

Query: 103 HVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITI 162
           HV +  E      +P +Q             E   +   C    +     L W   G   
Sbjct: 546 HVTRGPE---ITLQPDMQPT-----------EQESVSLWCTADRSTFE-NLTWYKLGPQP 590

Query: 163 SNNASAGRIIT----------------------NQTLVLQSVTRHSGGLYACSAINSQGE 200
                                               + L++ +    G Y C A + + +
Sbjct: 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTK 650

Query: 201 GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA 260
                    +  +  +       P    + +        E + VSCT   NP  Q   W 
Sbjct: 651 KRHC-VVRQLTVLERV------APTITGNLENQT-TSIGESIEVSCTASGNPPPQ-IMWF 701

Query: 261 FNNSDTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
            +N       L       ++DG+ ++       + + G   C A +  G  +    F +
Sbjct: 702 KDN-----ETLVEDSGIVLKDGNRNL-TIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 72.5 bits (177), Expect = 4e-14
 Identities = 44/372 (11%), Positives = 84/372 (22%), Gaps = 87/372 (23%)

Query: 2   VNLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS 61
             +  +           + +  A   E+V +       P  +   W  N       PL S
Sbjct: 320 TFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPE-IKWYKNG-----IPLES 373

Query: 62  -YSIQDGST-SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
            ++I+ G   ++   +      Y        N    ++      +V        V  P  
Sbjct: 374 NHTIKAGHVLTIMEVSERDTGNY---TVILTNPISKEKQSHVVSLV--------VYVPPQ 422

Query: 120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ---- 175
             +            G      C + A PP   + W         N  +  +        
Sbjct: 423 IGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPC 482

Query: 176 -------------------------------TLVLQSVTRHSGGLYACSAINSQGEGGST 204
                                             L     +   LY C A+N  G G   
Sbjct: 483 EEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG-ER 541

Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS 264
               ++ +   +      +P               E V + CT D +      TW     
Sbjct: 542 VISFHVTRGPEITLQPDMQPT------------EQESVSLWCTADRSTFEN-LTWYKLGP 588

Query: 265 DTAPRPLTSYSIQDGSTSVARYTPTSELEY-------------------GTLLCWARNEQ 305
              P  +              +   + +                     G  +C A++ +
Sbjct: 589 QPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRK 648

Query: 306 GSQRTPCTFHVV 317
             +R      + 
Sbjct: 649 TKKRHCVVRQLT 660

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 97.3 bits (242), Expect = 3e-22
 Identities = 46/307 (14%), Positives = 90/307 (29%), Gaps = 50/307 (16%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
                 V + C    NP  +  +W  +      + + +    +    V +Y   +     
Sbjct: 441 MEPGPSVFLKCVAGGNPTPE-ISWELDG-----KKIAN----NDRYQVGQYVTVNGDVVS 490

Query: 84  TLL-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNAS 130
            L              C A+++ G        +V            P +     R +   
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY---------GLPYI-----RQMEKK 536

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS-GGL 189
            +  G  +   C +   P    ++W  +   +  N    ++  N TL++++V R+S    
Sbjct: 537 AIVAGETLIVTCPVAGYPIDS-IVWERDNRALPINRKQ-KVFPNGTLIIENVERNSDQAT 594

Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD 249
           Y C A N +G       ++ +          +  P           A   + + + C+V 
Sbjct: 595 YTCVAKNQEGYSARGSLEVQV----------MVLPRIIPFAFEEGPAQVGQYLTLHCSVP 644

Query: 250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
                    W  +    +     + S      SV           G   C ARN  G Q+
Sbjct: 645 GGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ 704

Query: 310 TPCTFHV 316
                +V
Sbjct: 705 FTTPLNV 711

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 86.9 bits (215), Expect = 8e-19
 Identities = 44/320 (13%), Positives = 83/320 (25%), Gaps = 56/320 (17%)

Query: 11  EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-TAPRPLTSYSIQDGST 69
             V   ++  +     +  + + C     P   +  W     G T  + +         +
Sbjct: 247 PKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVF-RWYKFIEGTTRKQAVVLNDRVKQVS 305

Query: 70  SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
                      + G  LC   N  G +       V             S +I        
Sbjct: 306 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV---------TAPLSAKIDP-PTQTV 355

Query: 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGL 189
                G    F C    NP  K + W  +G  I ++           L ++SV +   G+
Sbjct: 356 D---FGRPAVFTCQYTGNPI-KTVSWMKDGKAIGHS--------ESVLRIESVKKEDKGM 403

Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD 249
           Y C   N +                 L      +P   +   +         V + C   
Sbjct: 404 YQCFVRNDRES---------AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG 454

Query: 250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL----------- 298
            NP  +  +W  +      + + +    +    V +Y   +      L            
Sbjct: 455 GNPTPE-ISWELDG-----KKIAN----NDRYQVGQYVTVNGDVVSYLNITSVHANDGGL 504

Query: 299 --CWARNEQGSQRTPCTFHV 316
             C A+++ G        +V
Sbjct: 505 YKCIAKSKVGVAEHSAKLNV 524

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 80.0 bits (197), Expect = 2e-16
 Identities = 58/313 (18%), Positives = 93/313 (29%), Gaps = 47/313 (15%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS----IQDGSTSVARYTPTSE 79
            +  E ++V+C V   P      W  +N     R L          +G+  +      S+
Sbjct: 538 IVAGETLIVTCPVAGYPIDSI-VWERDN-----RALPINRKQKVFPNGTLIIENVERNSD 591

Query: 80  LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
               T  C A+N++G      +  V         +  P +               G  + 
Sbjct: 592 Q--ATYTCVAKNQEGYSAR-GSLEVQV-------MVLPRIIPFAFEEG---PAQVGQYLT 638

Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHSGGLYACSAIN 196
             C +        + WT +G  IS +              L +++V     G + C A N
Sbjct: 639 LHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARN 698

Query: 197 SQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQY 256
             G    T   LN+             P             +     V C  D  P+ Q 
Sbjct: 699 LAGHQQFT-TPLNVY----------VPPRWILEPTDKA-FAQGSDAKVECKADGFPKPQ- 745

Query: 257 FTWAFNNSDTAP--RPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP 311
            TW     DT    + L       +++G+  V       +   G  LC A N  GS  + 
Sbjct: 746 VTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDN---IQKTNEGYYLCEAINGIGSGLSA 802

Query: 312 CTFHVVKAGECEH 324
                V+A    H
Sbjct: 803 VIMISVQAHHHHH 815

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 41/315 (13%), Positives = 83/315 (26%), Gaps = 30/315 (9%)

Query: 15  KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS--YSIQDGS---T 69
           K+   RI     +    + C    NP  +   W  ++ GTA   +        DG     
Sbjct: 43  KEPTNRID-FSNSTGAEIECKASGNPMPEI-IWIRSD-GTAVGDVPGLRQISSDGKLVFP 99

Query: 70  SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
                    E+      C ARN+ G+  +      V+A   ++     + +         
Sbjct: 100 PFRAEDYRQEVHAQVYACLARNQFGSIISRDVH--VRAVVAQYYEADVNKE--------- 148

Query: 130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHNG--ITISNNASAGRIITNQ--TLVLQSVT 183
             +  G      C I +      + + W  +            G+ +      L ++ V 
Sbjct: 149 -HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 207

Query: 184 R-HSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQV 242
                  Y C   +                +   I +++   V   ++  +     +  +
Sbjct: 208 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAV-PKVVSLAKFDMKTYSGSSTM 266

Query: 243 LVSCTVDANPQAQYFTWAFNNSD-TAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301
            + C     P   +  W       T  + +         +           + G  LC  
Sbjct: 267 ALLCPAQGYPVPVF-RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV 325

Query: 302 RNEQGSQRTPCTFHV 316
            N  G +       V
Sbjct: 326 NNSVGGESVETVLTV 340

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 51/295 (17%), Positives = 95/295 (32%), Gaps = 61/295 (20%)

Query: 26  RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTL 85
                + +C    NP     +W  +      + +      +    +       +  Y   
Sbjct: 357 FGRPAVFTCQYTGNPIKTV-SWMKDG-----KAIGH---SESVLRIESVKKEDKGMYQ-- 405

Query: 86  LCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145
            C+ RN++ +        +          D P ++           +  G  ++  C   
Sbjct: 406 -CFVRNDRESAEASAELKL------GGRFDPPVIRQAF----QEETMEPGPSVFLKCVAG 454

Query: 146 ANPPYKKLIWTHNGITISNNASAGRIITNQ----------TLVLQSVTRHSGGLYACSAI 195
            NP   ++ W  +G  I+NN    R    Q           L + SV  + GGLY C A 
Sbjct: 455 GNPT-PEISWELDGKKIANN---DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510

Query: 196 NSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ 255
           +  G        LN+  +          P  +Q +++    +  E ++V+C V   P   
Sbjct: 511 SKVGV-AEHSAKLNVYGL----------PYIRQMEKKA--IVAGETLIVTCPVAGYPIDS 557

Query: 256 YFTWAFNNSDTAPRPLTSYS----IQDGSTSVARYTPTSELEYGTLLCWARNEQG 306
              W  +N     R L          +G+  +      S+    T  C A+N++G
Sbjct: 558 I-VWERDN-----RALPINRKQKVFPNGTLIIENVERNSDQ--ATYTCVAKNQEG 604

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 71.5 bits (175), Expect = 1e-13
 Identities = 34/303 (11%), Positives = 71/303 (23%), Gaps = 39/303 (12%)

Query: 24  ALRNEQVLVSCTV---DANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPT 77
            +R    ++ C +    A+      +W  +              Y +        R    
Sbjct: 150 VIRGNSAVIKCLIPSFVADFVEVV-SWHTDEEENYFPGAEYDGKYLVLPSGELHIREV-G 207

Query: 78  SELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVD 137
            E  Y +  C  ++    +                    P V        +    +    
Sbjct: 208 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSL--AKFDMKTYSGSST 265

Query: 138 IYFDCHIQANPPYKKLIWTHNGITISNNA----SAGRIITNQTLVLQSVTRHSGGLYACS 193
           +   C  Q  P      W       +       +      + TL+++       G Y C 
Sbjct: 266 MALLCPAQGYPVPV-FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 324

Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253
             NS G           +    L       P+  +              + +C    NP 
Sbjct: 325 VNNSVGG---------ESVETVLTVT---APLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 372

Query: 254 AQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT 313
               +W  +      + +      +    +       +  Y    C+ RN++ S      
Sbjct: 373 KTV-SWMKDG-----KAIGH---SESVLRIESVKKEDKGMYQ---CFVRNDRESAEASAE 420

Query: 314 FHV 316
             +
Sbjct: 421 LKL 423

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 36/248 (14%), Positives = 63/248 (25%), Gaps = 37/248 (14%)

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
                 A    G+Q          A        K  V +K     N    +       +C
Sbjct: 12  MLFAAVALIACGSQTL--------AANPPDADQKGPVFLK--EPTNRIDFSNSTGAEIEC 61

Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIIT-NQTLVLQSVTRHSG------GLYACSAI 195
               NP  + +IW  +  T   +    R I+ +  LV                +YAC A 
Sbjct: 62  KASGNPMPE-IIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120

Query: 196 NSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV---DANP 252
           N  G   S    +             +  V K+        +R    ++ C +    A+ 
Sbjct: 121 NQFGSIISRDVHVRAVVA-----QYYEADVNKEH------VIRGNSAVIKCLIPSFVADF 169

Query: 253 QAQYFTWAFNNSDTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
                +W  +  +           Y +        R     E  Y +  C  ++    + 
Sbjct: 170 VEVV-SWHTDEEENYFPGAEYDGKYLVLPSGELHIREV-GPEDGYKSYQCRTKHRLTGET 227

Query: 310 TPCTFHVV 317
                   
Sbjct: 228 RLSATKGR 235

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 24/146 (16%), Positives = 40/146 (27%), Gaps = 16/146 (10%)

Query: 177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPV-CKQSQQRIYG 235
           + + +       L+A  A+ + G               N        PV  K+   RI  
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLA---------ANPPDADQKGPVFLKEPTNRID- 50

Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNN-SDTAPRPLTSYSIQDGS---TSVARYTPTSE 291
              +    + C    NP  +   W  ++ +     P       DG              E
Sbjct: 51  FSNSTGAEIECKASGNPMPEI-IWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQE 109

Query: 292 LEYGTLLCWARNEQGSQRTPCTFHVV 317
           +      C ARN+ GS  +       
Sbjct: 110 VHAQVYACLARNQFGSIISRDVHVRA 135

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 96.2 bits (239), Expect = 6e-22
 Identities = 53/290 (18%), Positives = 86/290 (29%), Gaps = 47/290 (16%)

Query: 27  NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 86
              + +SC   +NP AQY +W  +                    ++  T  +   Y    
Sbjct: 396 GVNLSLSCHAASNPPAQY-SWLIDG-----NIQQH----TQELFISNITEKNSGLYT--- 442

Query: 87  CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
           C A N            +  + E   P    +         N+  + +   + F C  +A
Sbjct: 443 CQANNSASGHSRTTVKTITVSAELPKPSISSN---------NSKPVEDKDAVAFTCEPEA 493

Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF 206
                  +W  NG ++  +        N+TL L +VTR+    Y C   NS     S P 
Sbjct: 494 QNT--TYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPV 551

Query: 207 DLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDT 266
            L++             P            L    + +SC   +NP  QY +W  N    
Sbjct: 552 TLDVL----------YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQY-SWRING--- 597

Query: 267 APRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
              P          T V      +    GT  C+  N    +       +
Sbjct: 598 --IPQQ-------HTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 88.5 bits (219), Expect = 3e-19
 Identities = 54/293 (18%), Positives = 87/293 (29%), Gaps = 49/293 (16%)

Query: 26  RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS-VARYTPTSELEYGT 84
             E + +SC   +NP AQY +W  N  GT  +      I + + +    YT         
Sbjct: 217 SGENLNLSCHAASNPPAQY-SWFVN--GTFQQSTQELFIPNITVNNSGSYT--------- 264

Query: 85  LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
             C A N            +    E   P    +         N++ + +   +   C  
Sbjct: 265 --CQAHNSDTGLNRTTVTTITVYAEPPKPFITSN---------NSNPVEDEDAVALTCEP 313

Query: 145 QANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
           +        +W  N  ++  +        N+TL L SVTR+  G Y C   N      S 
Sbjct: 314 EIQNT--TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD 371

Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS 264
           P  LN+    +    S                     + +SC   +NP AQY +W  +  
Sbjct: 372 PVILNVLYGPDDPTISPSYTY----------YRPGVNLSLSCHAASNPPAQY-SWLIDG- 419

Query: 265 DTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
                             ++  T  +   Y    C A N            + 
Sbjct: 420 ----NIQQH----TQELFISNITEKNSGLYT---CQANNSASGHSRTTVKTIT 461

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 80.4 bits (198), Expect = 1e-16
 Identities = 49/321 (15%), Positives = 81/321 (25%), Gaps = 51/321 (15%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEY- 82
               ++VL+           Y +W         R +  Y I     +        E+ Y 
Sbjct: 11  VAEGKEVLLLVHNLPQHLFGY-SWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP 69

Query: 83  -GTLL-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLN 128
             +LL                               V     +  +   + +        
Sbjct: 70  NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKP------- 122

Query: 129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGG 188
              + +   + F C  +        +W  N  ++  +        N+TL L +VTR+   
Sbjct: 123 ---VEDKDAVAFTCEPETQDA--TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTA 177

Query: 189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
            Y C   N      S    LN+    +    S                   E + +SC  
Sbjct: 178 SYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTS----------YRSGENLNLSCHA 227

Query: 249 DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ 308
            +NP AQY +W  N          S         +   T  +   Y    C A N     
Sbjct: 228 ASNPPAQY-SWFVNG-----TFQQS----TQELFIPNITVNNSGSY---TCQAHNSDTGL 274

Query: 309 RTPCTFHVVKAGECEHPVAVS 329
                  +    E   P   S
Sbjct: 275 NRTTVTTITVYAEPPKPFITS 295

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 78.5 bits (193), Expect = 4e-16
 Identities = 50/314 (15%), Positives = 90/314 (28%), Gaps = 47/314 (14%)

Query: 11  EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGS-- 68
            P    S          + V  +C  +       + W  NN      P    S  + +  
Sbjct: 110 LPKPSISSNNSKPVEDKDAVAFTCEPETQDAT--YLWWVNNQSLPVSPRLQLSNGNRTLT 167

Query: 69  -TSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNL 127
             +V R       +  +  C  +N    +R+  +  +      + P   P          
Sbjct: 168 LFNVTRN------DTASYKCETQNPVSARRS-DSVILNVLYGPDAPTISPLNT------- 213

Query: 128 NASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSG 187
                  G ++   CH  +NPP +   W  NG             + Q L + ++T ++ 
Sbjct: 214 ---SYRSGENLNLSCHAASNPPAQ-YSWFVNGTFQQ---------STQELFIPNITVNNS 260

Query: 188 GLYACSAINSQGEG-GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSC 246
           G Y C A NS      +T   + +       F + +                 + V ++C
Sbjct: 261 GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSN---------PVEDEDAVALTC 311

Query: 247 TVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG 306
             +         W  NN      P    S  + + ++   T      Y    C  +NE  
Sbjct: 312 EPEIQNTTY--LWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPY---ECGIQNELS 366

Query: 307 SQRTPCTFHVVKAG 320
              +      V  G
Sbjct: 367 VDHSDPVILNVLYG 380

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 87.3 bits (216), Expect = 3e-19
 Identities = 49/306 (16%), Positives = 95/306 (31%), Gaps = 36/306 (11%)

Query: 24  ALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTS-----YSIQ-DGSTSVARYTP 76
            +      + C + +A P+    TW    SG  P    +      +   DG+      T 
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLI-TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTK 170

Query: 77  TSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV 136
               +    +C A+N   ++      + +K    ++   K     +        +   G 
Sbjct: 171 EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQ--YVSKDMMAKAGD 228

Query: 137 DIYFDCHIQANPPYKKLIWTHNGITISNNASA----GRIITNQTLVLQSVTRHSGGLYAC 192
                C   +NP      +  NG  ++ N           + + L+ ++      G+Y C
Sbjct: 229 VTMIYCMYGSNPM-GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287

Query: 193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252
              N  G+       L +             P  +Q  +++    + + V + C V   P
Sbjct: 288 EVDNGVGKPQKHSLKLTVVSA----------PKYEQKPEKVIVVKQGQDVTIPCKVTGLP 337

Query: 253 QAQYFTWAFNNSDTAPRPLTS--YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT 310
                 W+ N      +PL+    ++ D    +       +  YG   C A NE G +  
Sbjct: 338 APNV-VWSHNA-----KPLSGGRATVTDSGLVIKGVKNGDKGYYG---CRATNEHGDKYF 388

Query: 311 PCTFHV 316
                V
Sbjct: 389 ETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 46/305 (15%), Positives = 84/305 (27%), Gaps = 29/305 (9%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-SYSIQDGSTSVARYTPTSELEY 82
              N   ++ C ++ N Q   ++W  +      +    +    +GS    R   + E  Y
Sbjct: 18  FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHY 77

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
               C+A    G   +       +         K   +             EG     DC
Sbjct: 78  ---QCFAETPAGVASSRVI--SFRKTYLIASPAKTHEK----------TPIEGRPFQLDC 122

Query: 143 HIQANPPYKKLIWTHNGITISNNASAGR------IITNQTLVLQSVTR---HSGGLYACS 193
            +    P   + W         NA             +  L    VT+        Y C+
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182

Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253
           A N+  +      +  I  +         EPV +   + +  A   +  ++ C   +NP 
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMM-AKAGDVTMIYCMYGSNPM 241

Query: 254 AQYFTWAFNNSDTAPRPLTSYSIQ-DGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC 312
                +  N  D    P    +     S     +  T   + G   C   N  G  +   
Sbjct: 242 GY-PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK-H 299

Query: 313 TFHVV 317
           +  + 
Sbjct: 300 SLKLT 304

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 65.3 bits (159), Expect = 6e-12
 Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 20/196 (10%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-TLVLQSVTRHSGGL 189
           +  E      +C I+ N    K  W  +G + +       +  ++ +LV         G 
Sbjct: 17  LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGH 76

Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV- 248
           Y C A    G   S         +       I  P     +  I G        + C + 
Sbjct: 77  YQCFAETPAGVASSRVISFRKTYL-------IASPAKTHEKTPIEG----RPFQLDCVLP 125

Query: 249 DANPQAQYFTWAFNNSDTAPRPLTS-----YSIQ-DGSTSVARYTPTSELEYGTLLCWAR 302
           +A P+    TW    S   P    +      +   DG+      T     +    +C A+
Sbjct: 126 NAYPKPLI-TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184

Query: 303 NEQGSQRTPCTFHVVK 318
           N    +      + +K
Sbjct: 185 NAAVDEEVVLVEYEIK 200

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 86.4 bits (214), Expect = 9e-19
 Identities = 52/303 (17%), Positives = 88/303 (29%), Gaps = 42/303 (13%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
           A   E + + C VD  P+ +   W   ++     P      ++   S+           G
Sbjct: 17  AAIGEPITLQCKVDGTPEIRI-AWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDV-G 74

Query: 84  TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
              C A N  G   +     + +         K                  G  + F+C 
Sbjct: 75  EYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDV----------HETLGFPVAFECR 124

Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIITNQ--TLVLQSVTRHSGGLYACSAINSQGEG 201
           I  + P + + W  +G  + ++A+      +   TL +    +   G Y CSA N  G  
Sbjct: 125 INGSEPLQ-VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTA 183

Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF 261
            S+           L  +  + P     +         E     C V      +  TWA 
Sbjct: 184 SSS---------AKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK-ITWAK 233

Query: 262 NNSDTAPRPLTSYSIQDGSTSVARYTPTSELE--------YGTLLCWARNEQGSQRTPCT 313
           +N     R +       G+  +     T+ L          G   C+A N  G       
Sbjct: 234 DN-----REIRP----GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 284

Query: 314 FHV 316
             V
Sbjct: 285 LGV 287

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 85.2 bits (211), Expect = 3e-18
 Identities = 53/307 (17%), Positives = 92/307 (29%), Gaps = 55/307 (17%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE-- 81
               E     C V      +  TWA +N     R +       G+  +     T+ L   
Sbjct: 209 LALGESGTFKCHVTGTAPIK-ITWAKDN-----REIRP----GGNYKMTLVENTATLTVL 258

Query: 82  ------YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEG 135
                  G   C+A N  G         V +          P    KL  +       + 
Sbjct: 259 KVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP---------PRFIKKLEPSRIVK---QD 306

Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYACS 193
               ++C I  +P  K ++W  +   I  ++            L + +++    G Y C 
Sbjct: 307 EHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365

Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253
           A N+ G           +   +L    + EP   + +      L+   V + C +   P 
Sbjct: 366 AHNAAGS---------ASSSTSL---KVKEPPVFRKKPHPVETLKGADVHLECELQGTPP 413

Query: 254 AQYFTWAFNNSDTAPRPLTS---YSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
            Q  +W  +      R L S   Y I  +   +          + G   C A N+ GS  
Sbjct: 414 FQ-VSWHKDK-----RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467

Query: 310 TPCTFHV 316
              +  +
Sbjct: 468 CVGSITL 474

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 84.1 bits (208), Expect = 6e-18
 Identities = 48/324 (14%), Positives = 96/324 (29%), Gaps = 36/324 (11%)

Query: 2   VNLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPL 59
             L+      P     + +         V   C ++ +   Q  +W  +           
Sbjct: 91  AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQV-SWYKDGELLKDDANLQ 149

Query: 60  TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
           TS+     +  + +   +   +Y    C A N  G   +     + +          P  
Sbjct: 150 TSFIHNVATLQILQTDQSHVGQY---NCSASNPLGTASSSAKLTLSEHEV------PPFF 200

Query: 120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTL 177
            +K     +  +   G    F CH+    P K + W  +   I    +    +     TL
Sbjct: 201 DLKPV---SVDLA-LGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATL 255

Query: 178 VLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGAL 237
            +  VT+   G Y C A N  G+  S    L + +           P   +  +      
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEP----------PRFIKKLEPSRIVK 304

Query: 238 RNEQVLVSCTVDANPQAQYFTWAFNNS--DTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
           ++E     C +  +P+ +   W  + +    + +   S+        +   +       G
Sbjct: 305 QDEHTRYECKIGGSPEIKV-LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS---G 360

Query: 296 TLLCWARNEQGSQRTPCTFHVVKA 319
              C A N  GS  +  +  V + 
Sbjct: 361 DYTCEAHNAAGSASSSTSLKVKEP 384

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 75.6 bits (186), Expect = 3e-15
 Identities = 41/298 (13%), Positives = 96/298 (32%), Gaps = 41/298 (13%)

Query: 27  NEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 84
           +E     C +  +P+ +   W  + +    + +   S+        +   +       G 
Sbjct: 306 DEHTRYECKIGGSPEIKV-LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS---GD 361

Query: 85  LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
             C A N  G+  +  +  V          + P  + K         L +G D++ +C +
Sbjct: 362 YTCEAHNAAGSASSSTSLKVK---------EPPVFRKKP---HPVETL-KGADVHLECEL 408

Query: 145 QANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSGGLYACSAINSQG 199
           Q  PP++ + W  +   + +     +          ++ + +V     G Y C A N  G
Sbjct: 409 QGTPPFQ-VSWHKDKRELRSG---KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 464

Query: 200 EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTW 259
                        + ++   ++  P     +      +  E+V +  T++         W
Sbjct: 465 S---------DTCVGSI---TLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPIS-VAW 511

Query: 260 AFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
             +  +        +     + +  +++       G   C  +NE G+Q    T  V+
Sbjct: 512 FKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 66.8 bits (163), Expect = 3e-12
 Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 27/184 (14%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSI-QDGSTSVARYTPTSE 79
            L+   V + C +   P  Q  +W  +      R L S   Y I  +   +         
Sbjct: 396 TLKGADVHLECELQGTPPFQ-VSWHKDK-----RELRSGKKYKIMSENFLTSIHILNVDS 449

Query: 80  LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
            + G   C A N+ G+     +  +            P    KL    + S +  G ++ 
Sbjct: 450 ADIGEYQCKASNDVGSDTCVGSITLK---------APPRFVKKLS---DISTV-VGEEVQ 496

Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ---TLVLQSVTRHSGGLYACSAIN 196
               I+   P   + W  +   I   +    I  ++   TL        + G Y C   N
Sbjct: 497 LQATIEGAEPIS-VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKN 555

Query: 197 SQGE 200
             G 
Sbjct: 556 EAGT 559

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 84.5 bits (209), Expect = 1e-18
 Identities = 52/301 (17%), Positives = 91/301 (30%), Gaps = 35/301 (11%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE-Y 82
            +        C    +P+ +  TW         +   +    + + +V R  P       
Sbjct: 18  GVSGGVASFVCQATGDPKPR-VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDE 76

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
               C A+N  G         V++  E + P   P++ +         V+         C
Sbjct: 77  NVYECVAQNSVGEITVHAKLTVLR--EDQLPSGFPNIDMGP----QLKVVERTRTATMLC 130

Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRI--ITNQTLVLQSVTRHSGGLYACSAINSQGE 200
               NP   ++ W  + + +  +AS GRI  + +  L ++S      G Y C A NS G 
Sbjct: 131 AASGNPD-PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGV 189

Query: 201 GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA 260
             S+P +L +   V  +                   +    V ++C    +P      W 
Sbjct: 190 RYSSPANLYVR--VQNVAPRFSILPMSHE------IMPGGNVNITCVAVGSPMPY-VKWM 240

Query: 261 FNNSDTAPR---PLTSYSIQDGSTS-VARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
               D  P    P+    ++       A YT           C A +  G         V
Sbjct: 241 QGAEDLTPEDDMPVGRNVLELTDVKDSANYT-----------CVAMSSLGVIEAVAQITV 289

Query: 317 V 317
            
Sbjct: 290 K 290

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 84.5 bits (208), Expect = 2e-18
 Identities = 45/319 (14%), Positives = 79/319 (24%), Gaps = 33/319 (10%)

Query: 12  PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-----APRPLTSYSIQD 66
           P C         A   E     C    +    +     +N          R   +  +++
Sbjct: 29  PSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN 88

Query: 67  GSTSVARYTPT-SELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGR 125
           G   +A YT   S   Y   LC    + G+         ++      P            
Sbjct: 89  GDLWIANYTSNDSHRRY---LCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELG------ 139

Query: 126 NLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRH 185
                  ++   I   C I     Y  + W  N   +  +       + Q L++ +    
Sbjct: 140 ------THDKYGIDLYCGILYAKHYNNITWYKNNQELIID-GTKYSQSGQNLIIHNPELE 192

Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS 245
             G Y C              D+ +++   L      +   K            E   ++
Sbjct: 193 DSGRYDCYVHYDD---VRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANIT 249

Query: 246 CTVDANPQAQY---FTWAFNNSDTAPRPLTSYSIQDGSTSVARYT----PTSELEYGTL- 297
           CT  +           W   +          YSI   S  +   T      +E   G   
Sbjct: 250 CTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTY 309

Query: 298 LCWARNEQGSQRTPCTFHV 316
            C   N    +    T  +
Sbjct: 310 TCRGHNYYFDKTLTTTVVL 328

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 82.6 bits (204), Expect = 1e-17
 Identities = 44/298 (14%), Positives = 87/298 (29%), Gaps = 26/298 (8%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ-DGSTSVARYTPTSELEY 82
            +R   VL++C+ +++       W  +    A           +GS  +     +   + 
Sbjct: 33  TMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKP 92

Query: 83  --GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
             G   C A           T  V+ AG             +   ++ A     G  +  
Sbjct: 93  DEGLYQCEASLGDSGSIISRTAKVMVAG-------PLRFLSQT-ESITAF---MGDTVLL 141

Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYACSAINSQ 198
            C +  +P    + W  N   ++      R++   +  L +  +     G+Y CSA N  
Sbjct: 142 KCEVIGDPMP-TIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPA 200

Query: 199 GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT 258
                   ++ I     L    +   +    +     A+  +  ++ C V   P    FT
Sbjct: 201 STRTGNEAEVRI-----LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPS-FT 254

Query: 259 WAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
           W         R      +   +  ++  T       GT  C    +  +        V
Sbjct: 255 WLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDS---GTYTCVVTYKNENISASAELTV 309

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 50/294 (17%), Positives = 85/294 (28%), Gaps = 46/294 (15%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQ-DGSTSVARYTPTSELE 81
           A   + VL+ C V  +P      W  N     P P  S   +   G+  ++R  P     
Sbjct: 133 AFMGDTVLLKCEVIGDPMPTI-HWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDS-- 189

Query: 82  YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFD 141
            G   C ARN    +        + +   +  + +    ++   N+ A    EG D   +
Sbjct: 190 -GVYRCSARNPASTRTGNEAEVRILS---DPGLHRQLYFLQRPSNVIAI---EGKDAVLE 242

Query: 142 CHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
           C +   PP     W      I   +    ++    L++ +VT    G Y C         
Sbjct: 243 CCVSGYPPPS-FTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN- 300

Query: 202 GSTPFDLNINKMVNLIFNS----IDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF 257
                   I+    L        ++ P    +            +   C V   P     
Sbjct: 301 --------ISASAELTVLVPPWFLNHP---SNLYAYES----MDIEFECAVSGKPVPTV- 344

Query: 258 TWAFNNSDTAPRPLTSYS----IQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307
            W  N        +        +   +  +     + E   G   C A NE G+
Sbjct: 345 NWMKNG-----DVVIPSDYFQIVGGSNLRILGVVKSDE---GFYQCVAENEAGN 390

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 24/198 (12%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASA-GRIITNQTLVLQSVTRHS--- 186
           V   G ++  +C  +++     + W  +G+ ++       + + N +L++Q++       
Sbjct: 32  VTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHK 91

Query: 187 --GGLYACSA-INSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVL 243
              GLY C A +   G   S    + +     L F S  E +          A   + VL
Sbjct: 92  PDEGLYQCEASLGDSGSIISRTAKVMVAGP--LRFLSQTESI---------TAFMGDTVL 140

Query: 244 VSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YSIQ-DGSTSVARYTPTSELEYGTLLCWA 301
           + C V  +P      W  N  D  P P  S   +   G+  ++R  P      G   C A
Sbjct: 141 LKCEVIGDPMPTI-HWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDS---GVYRCSA 196

Query: 302 RNEQGSQRTPCTFHVVKA 319
           RN   ++        + +
Sbjct: 197 RNPASTRTGNEAEVRILS 214

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 82.2 bits (203), Expect = 2e-17
 Identities = 48/309 (15%), Positives = 81/309 (26%), Gaps = 26/309 (8%)

Query: 9   TDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGS 68
             EP    S          ++V +SC V  NP+     W  N +         YS+ DGS
Sbjct: 9   VQEP----SHVMFPLDSEEKKVKLSCEVKGNPKPHI-RWKLNGTDVDIGMDFRYSVVDGS 63

Query: 69  TSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLN 128
             +    P    + GT  C A N  G   +     +  A          S          
Sbjct: 64  LLINN--PNKTQDAGTYQCIATNSFGTIVS-REAKLQFAYLENFKTRTRSTV-------- 112

Query: 129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGG 188
              +  G  +   C    +       W  N      +           L +  V +   G
Sbjct: 113 --SVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVG 170

Query: 189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
            Y C   N+            +    + +    +  +  Q  + +  A +   V + C  
Sbjct: 171 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVP-AEKGTTVKLECFA 229

Query: 249 DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWARNEQGS 307
             NP      W   +    P    +   +      +  +        G+  C A N +G 
Sbjct: 230 LGNPVPTI-LWRRADGK--PIARKARRHKSNGILEIPNFQQEDA---GSYECVAENSRGK 283

Query: 308 QRTPCTFHV 316
                    
Sbjct: 284 NVAKGQLTF 292

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 23/178 (12%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
           A +   V + C    NP      W   + G            +G   +  +        G
Sbjct: 217 AEKGTTVKLECFALGNPVPTI-LWRRAD-GKPIARKARRHKSNGILEIPNFQQEDA---G 271

Query: 84  TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
           +  C A N +G                     +P+    +  +++ +       ++++C 
Sbjct: 272 SYECVAENSRGKNVAKGQLTFY---------AQPNWVQII-NDIHVA---MEESVFWECK 318

Query: 144 IQANPPYKKLIWTHNGITISNNASAGRI-ITNQTLVLQSVTRHSGGLYACSAINSQGE 200
               P      W  NG  +       RI I   TL +  V     G+Y C A N  G 
Sbjct: 319 ANGRPK-PTYRWLKNGDPLLTR---DRIQIEQGTLNITIVNLSDAGMYQCVAENKHGV 372

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 81.8 bits (202), Expect = 2e-17
 Identities = 55/312 (17%), Positives = 90/312 (28%), Gaps = 30/312 (9%)

Query: 9   TDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGS 68
            ++P    +          E+V ++C   ANP A Y  W  N +     P + Y +  G 
Sbjct: 8   EEQP----AHTLFPEGSAEEKVTLTCRARANPPATY-RWKMNGTELKMGPDSRYRLVAGD 62

Query: 69  TSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLN 128
             ++   P    + G+  C A N +G   +     +      E   ++            
Sbjct: 63  LVISN--PVKAKDAGSYQCVATNARGTVVSR-EASLRFGFLQEFSAEERDPV-------- 111

Query: 129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHS 186
              + EG  + F C    + P     W  N       A   R ++     L +       
Sbjct: 112 --KITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASD 169

Query: 187 GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSC 246
            G Y+C A +       + F       +         P  K        AL  + V + C
Sbjct: 170 LGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLEC 229

Query: 247 TVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWARNEQ 305
               NP  Q   W   +        TS  +       +       E   GT  C A N +
Sbjct: 230 FAFGNPVPQI-KWRKLDG-----SQTSKWLSSEPLLHIQNVDFEDE---GTYECEAENIK 280

Query: 306 GSQRTPCTFHVV 317
           G         + 
Sbjct: 281 GRDTYQGRIIIH 292

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 44/296 (14%), Positives = 87/296 (29%), Gaps = 49/296 (16%)

Query: 24  ALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS--VARYTPTSEL 80
                 V+ +C+     P   Y  W  N             +   + +  +A+   +   
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSY-RWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLG 171

Query: 81  EYGTLLCWARNEQG--NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDI 138
            Y    C+A +      +     F  +     +     PS++ K   +        G  +
Sbjct: 172 NY---SCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADT---YALTGQMV 225

Query: 139 YFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQ 198
             +C    NP   ++ W     + ++      + +   L +Q+V     G Y C A N +
Sbjct: 226 TLECFAFGNPV-PQIKWRKLDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIK 280

Query: 199 GEGGSTPFDLNINKMVNLIFNS----IDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA 254
           G                +I ++    +D        +   G      +  SC     P+ 
Sbjct: 281 GR---------DTYQGRIIIHAQPDWLDVI---TDTEADIG----SDLRWSCVASGKPRP 324

Query: 255 QYFTWAFNNSDTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307
               W  +      +PL S     +  G    ++        Y    C A N+ G+
Sbjct: 325 AV-RWLRDG-----QPLASQNRIEVSGGELRFSKLVLEDSGMYQ---CVAENKHGT 371

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 79.0 bits (194), Expect = 1e-16
 Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 31/220 (14%)

Query: 15  KQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTA-PRPLTSYSIQDGSTSVA 72
            Q+  R      ++ ++ +CT  +  P +   +W     G A  + + + +      S  
Sbjct: 138 TQAVLRAKKGQDDKVLVATCTSANGKPPSV-VSWETRLKGEAEYQEIRNPNGTVTVISRY 196

Query: 73  RYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVL 132
           R  P+ E    +L C         +   T +V      ++    P V I      + +  
Sbjct: 197 RLVPSREAHQQSLACIVNYHMDRFKESLTLNV------QYE---PEVTI---EGFDGNWY 244

Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQS-VTRHSGGLYA 191
            + +D+   C   ANPP  +  WT    ++           N+TL  +  +     G Y 
Sbjct: 245 LQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV----EAQNRTLFFKGPINYSLAGTYI 300

Query: 192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQ 231
           C A N  G   S   ++NI           +    +    
Sbjct: 301 CEATNPIGT-RSGQVEVNIT----------EAAALEHHHH 329

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 67.9 bits (165), Expect = 7e-13
 Identities = 46/318 (14%), Positives = 78/318 (24%), Gaps = 50/318 (15%)

Query: 24  ALRNEQVLVSCTVD---ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSEL 80
                 V++ C+      + +    TW  + +G+  + +  Y+   G + +A Y    E 
Sbjct: 26  GFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGS-KQNVAIYNPSMGVSVLAPYRERVEF 84

Query: 81  EY------------------GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIK 122
                               G  +C         R       V            +    
Sbjct: 85  LRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV-------MAKPTNWIEG 137

Query: 123 LGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN----NASAGRIITNQTLV 178
               L A    +   +   C      P   + W       +         G +       
Sbjct: 138 TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYR 197

Query: 179 LQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR 238
           L           AC               LN+            EP            L+
Sbjct: 198 LVPSREAHQQSLACIVNYHMDRF-KESLTLNVQ----------YEPEVTIEGFDGNWYLQ 246

Query: 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 298
              V ++C  DANP A  + W   N       L         T   +  P +    GT +
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLN-----GSLPKGVEAQNRTLFFK-GPINYSLAGTYI 300

Query: 299 CWARNEQGSQRTPCTFHV 316
           C A N  G++      ++
Sbjct: 301 CEATNPIGTRSGQVEVNI 318

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 79.3 bits (195), Expect = 2e-16
 Identities = 49/299 (16%), Positives = 86/299 (28%), Gaps = 51/299 (17%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC 87
            Q  + C  ++ P+     W   +S        S ++      V       EL    + C
Sbjct: 155 NQDALVCISESVPEPIV-EWVLCDSQGESCKEESPAVVKKEEKVLH-----ELFGTDIRC 208

Query: 88  WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN 147
            ARNE G + T   F +      + P                  L  G  ++  C     
Sbjct: 209 CARNELGRECT-RLFTIDLN---QTPQTTLPQL----------FLKVGEPLWIRCKAVHV 254

Query: 148 PPYKKLIWTHNG--------ITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG 199
                L W              +S  ++   +I      + SV R+  G Y CS+     
Sbjct: 255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS 314

Query: 200 EGGSTPFDLNINKMVNLIFNSIDEP--VCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF 257
           +                   +I E   +   +    Y   + E+   S    A PQ +  
Sbjct: 315 Q---------------SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR-C 358

Query: 258 TWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
           TW F+       P     + +G +         + + G  +  A N+        T ++
Sbjct: 359 TWTFSR---KSFPCEQKGLDNGYSISKF--CNHKHQPGEYIFHAENDDAQFTKMFTLNI 412

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 62.0 bits (150), Expect = 8e-11
 Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 21/179 (11%)

Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-TLVLQSVTRHSGGLYA 191
           +    I     + A       +W     +++             ++V+  +T    G Y 
Sbjct: 61  DVSASITLQVLVDAPGN-ISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYL 119

Query: 192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN 251
               +            N   +  +   +      ++   R        Q  + C  ++ 
Sbjct: 120 LFIQSEAT---------NYTILFTVSIRNTLLYTLRRPYFRKME----NQDALVCISESV 166

Query: 252 PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT 310
           P+     W   +S        S ++      V       EL    + C ARNE G + T
Sbjct: 167 PEPIV-EWVLCDSQGESCKEESPAVVKKEEKVLH-----ELFGTDIRCCARNELGRECT 219

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 42/291 (14%), Positives = 81/291 (27%), Gaps = 42/291 (14%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGST-SVARYTPTSELEY 82
              +  + +   VDA        W F +S    +P      +   +  + + T T   EY
Sbjct: 60  VDVSASITLQVLVDAPGNISC-LWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
              L + ++E  N      F V       + + +P  +             E  D    C
Sbjct: 119 ---LLFIQSEATNYT--ILFTVSIRNTLLYTLRRPYFRK-----------MENQDA-LVC 161

Query: 143 HIQANPPYKKLIWTHNG-ITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
             ++ P    + W        S    +  ++  +  VL  +    G    C A N  G  
Sbjct: 162 ISESVPE-PIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL---FGTDIRCCARNELGRE 217

Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF 261
            +  F +++N+        +   V              E + + C           TW  
Sbjct: 218 CTRLFTIDLNQTPQTTLPQLFLKV-------------GEPLWIRCKAVHVNHGFGLTWEL 264

Query: 262 NNSDTAPRPLTSYSIQDGSTSVARY-----TPTSELEYGTLLCWARNEQGS 307
            N           S    + ++ R      +  +  + G   C +      
Sbjct: 265 ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 77.3 bits (190), Expect = 3e-16
 Identities = 47/301 (15%), Positives = 75/301 (24%), Gaps = 32/301 (10%)

Query: 27  NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 86
              V + C  + +       W    S             DGS+S+      +    GT  
Sbjct: 19  GATVTLRCVGNGS-----VEWDGPPSPHWTL------YSDGSSSILSTNNATFQNTGTYR 67

Query: 87  CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
           C    +          +V          D       L + +   V+ E  D    C +  
Sbjct: 68  CTEPGDPLGGSAAIHLYVK---------DPARPWNVLAQEV---VVFEDQDALLPCLLTD 115

Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF 206
                 +             +           +          Y CSA+    +  S   
Sbjct: 116 PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISI 175

Query: 207 DLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD- 265
            L + K++         P       RI G    E   + C+  +           NN+  
Sbjct: 176 RLKVQKVIPGPPALTLVP---AELVRIRG----EAAQIVCSASSVDVNFDVFLQHNNTKL 228

Query: 266 TAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV-KAGECEH 324
             P+    ++ +                 G   C A N QG   T   F VV  AG   H
Sbjct: 229 AIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHH 288

Query: 325 P 325
            
Sbjct: 289 H 289

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 78.6 bits (193), Expect = 4e-16
 Identities = 45/298 (15%), Positives = 81/298 (27%), Gaps = 51/298 (17%)

Query: 29  QVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW 88
           Q  + C  ++ P+     W   +S        S ++      V       EL    + C 
Sbjct: 156 QDALVCISESVPEPI-VEWVLCDSQGESCKEESPAVVKKEEKV-----LHELFGTDIRCC 209

Query: 89  ARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP 148
           ARNE G + T      +            + Q  L +      L  G  ++  C      
Sbjct: 210 ARNELGRECTRLFTIDLN----------QTPQTTLPQL----FLKVGEPLWIRCKAVHVN 255

Query: 149 PYKKLIWTHNGITISNNASAGR--------IITNQTLVLQSVTRHSGGLYACSAINSQGE 200
               L W      +                +I      + SV R+  G Y CS+      
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS- 314

Query: 201 GGSTPFDLNINKMVNLIFNSIDEP-VCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTW 259
                  + I          +++  +   +    Y   + E+   S    A PQ +  TW
Sbjct: 315 ---QSALVTI----------VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR-CTW 360

Query: 260 AFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
            F+      +          +          + + G  +  A N+         F + 
Sbjct: 361 TFSR-----KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFT--KMFTLN 411

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 73.2 bits (179), Expect = 2e-14
 Identities = 40/307 (13%), Positives = 80/307 (26%), Gaps = 55/307 (17%)

Query: 27  NEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARY-----TPTSEL 80
            E + + C     N      TW   N           S    + ++ R      +  +  
Sbjct: 242 GEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300

Query: 81  EYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
           + G   C +              +         V+K    I    +     +++  +  F
Sbjct: 301 DTGYYTCSSSKHPS---QSALVTI---------VEKG--FINATNSSEDYEIDQYEEFCF 346

Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
               +A P   +  WT +  +         +    ++      +H  G Y   A N    
Sbjct: 347 SVRFKAYPQI-RCTWTFSRKSFPCEQK--GLDNGYSISKFCNHKHQPGEYIFHAENDDA- 402

Query: 201 GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA 260
                      KM  L      +P       ++           SC  D  P    +TW 
Sbjct: 403 --------QFTKMFTLNIRR--KP-------QVL--AEASASQASCFSDGYPLPS-WTWK 442

Query: 261 FNN----SDTAPRPLTSYSIQDGSTSVARYTPTSEL------EYGTLLCWARNEQGSQRT 310
             +    + T       ++ +       ++  +S L      +   + C A N  G+   
Sbjct: 443 KCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCE 502

Query: 311 PCTFHVV 317
               +  
Sbjct: 503 TILLNSP 509

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 60.5 bits (146), Expect = 3e-10
 Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 21/181 (11%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-TNQTLVLQSVTRHSGGL 189
            ++    I     + A       +W     +++             ++V+  +T    G 
Sbjct: 59  EVDVSASITLQVLVDAPGNIS-CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGE 117

Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD 249
           Y     +            N   +  +   +      ++   R        Q  + C  +
Sbjct: 118 YLLFIQSEAT---------NYTILFTVSIRNTLLYTLRRPYFRKME----NQDALVCISE 164

Query: 250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
           + P+     W   +S        S ++      V       EL    + C ARNE G + 
Sbjct: 165 SVPEPI-VEWVLCDSQGESCKEESPAVVKKEEKV-----LHELFGTDIRCCARNELGREC 218

Query: 310 T 310
           T
Sbjct: 219 T 219

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 34/219 (15%), Positives = 56/219 (25%), Gaps = 46/219 (21%)

Query: 17  SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTP 76
           +    Y   + E+   S    A PQ +  TW F+      +          +        
Sbjct: 331 NSSEDYEIDQYEEFCFSVRFKAYPQIR-CTWTFSR-----KSFPCEQKGLDNGYSISKFC 384

Query: 77  TSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV 136
             + + G  +  A N+         F +              ++ K        VL E  
Sbjct: 385 NHKHQPGEYIFHAENDDAQFT--KMFTLN-------------IRRK------PQVLAEAS 423

Query: 137 DIYFDCHIQANPPYKKLIWTHNG---------------ITISNNASAGRIITNQTLVLQS 181
                C     P      W                      +N    G+ +++ TL +  
Sbjct: 424 ASQASCFSDGYPLPS-WTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSE 482

Query: 182 VTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNS 220
             +  G L  C A NS G        LN       I + 
Sbjct: 483 AIK--GFLVKCCAYNSLGT-SCETILLNSPGPFPFIQDG 518

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 76.7 bits (188), Expect = 5e-16
 Identities = 27/179 (15%), Positives = 53/179 (29%), Gaps = 20/179 (11%)

Query: 27  NEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSELEY 82
               +  C      P AQ  TW  ++ G  P          G    TS+    P+S+++ 
Sbjct: 132 EPVPMARCVSTGGRPPAQ-ITW-HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDG 189

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
             + C   +E   +    T ++      E  +                      +    C
Sbjct: 190 KNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNN----------WYLGQNEATLTC 239

Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
             ++NP      W+     +   A    +     L+++ V +       C+  N+ G  
Sbjct: 240 DARSNPEPTGYNWSTTMGPLPPFA----VAQGAQLLIRPVDKPINTTLICNVTNALGAR 294

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 67.8 bits (165), Expect = 5e-13
 Identities = 42/323 (13%), Positives = 86/323 (26%), Gaps = 62/323 (19%)

Query: 24  ALRNEQVLVSCTVDANPQAQYF----TWAFNNSGTAPRPLTSYSIQDGST-------SVA 72
               + V + C +             TWA +        +  +    G +          
Sbjct: 12  GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGE---SGSMAVFHQTQGPSYSESKRLEFV 68

Query: 73  RYTPTSELEYGTLL-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSV 119
                +EL   +L              C         R+   +  V A        KP  
Sbjct: 69  AARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA--------KPQN 120

Query: 120 QIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN-----NASAGRIITN 174
             ++ +      L         C      P  ++ W  +   + N        +G +   
Sbjct: 121 TAEVQK----VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVT 176

Query: 175 QTLVLQSVTRHSGGLYACSAINSQGEGG-STPFDLNINKMVNLIFNSIDEPVCKQSQQRI 233
              +L   ++  G    C   +   E       +L +           +  +        
Sbjct: 177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY-------YPPEVSISGYDNNWY 229

Query: 234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELE 293
            G     +  ++C   +NP+   + W+         PL  +++  G+       P  +  
Sbjct: 230 LG---QNEATLTCDARSNPEPTGYNWSTTM-----GPLPPFAVAQGAQ--LLIRPVDKPI 279

Query: 294 YGTLLCWARNEQGSQRTPCTFHV 316
             TL+C   N  G+++   T  V
Sbjct: 280 NTTLICNVTNALGARQAELTVQV 302

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 76.1 bits (187), Expect = 6e-16
 Identities = 41/293 (13%), Positives = 77/293 (26%), Gaps = 31/293 (10%)

Query: 26  RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTL 85
             E V + C  + +       W    S     P  +   +   +++     T +   GT 
Sbjct: 18  PGETVTLRCVSNGSV-----EWDGPIS-----PYWTLDPESPGSTLTTRNATFKNT-GTY 66

Query: 86  LCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145
            C    +     T    +V          D       L + +    + EG +    C I 
Sbjct: 67  RCTELEDPMAGSTTIHLYVK---------DPAHSWNLLAQEV---TVVEGQEAVLPCLIT 114

Query: 146 ANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTP 205
                  +     G       +       +  +++         Y C  + +  E  ST 
Sbjct: 115 DPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTG 174

Query: 206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD 265
             L +N++         EP       RI G    E   + C+               ++ 
Sbjct: 175 IWLKVNRVHPEPPQIKLEP---SKLVRIRG----EAAQIVCSATNAEVGFNVILKRGDTK 227

Query: 266 TAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
                 + +                   + G   C A N+ G++     F VV
Sbjct: 228 LEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 75.9 bits (187), Expect = 9e-16
 Identities = 57/305 (18%), Positives = 102/305 (33%), Gaps = 46/305 (15%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS--VARYTPTSELE 81
               E     C V      +  TWA +N    P      ++ + + +  V + T      
Sbjct: 17  LALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA-- 73

Query: 82  YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFD 141
            G   C+A N  G         V +          P    KL     + ++ +     ++
Sbjct: 74  -GQYTCYASNVAGKDSCSAQLGVQE---------PPRFIKKLE---PSRIVKQDEHTRYE 120

Query: 142 CHIQANPPYKKLIWTHNG--ITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG 199
           C I  +P   K++W  +   I  S+      + +   L + +++    G Y C A N+ G
Sbjct: 121 CKIGGSPE-IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179

Query: 200 EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTW 259
              S+   L + +           PV ++    +   L+   V + C +   P  Q  +W
Sbjct: 180 S-ASSSTSLKVKEP----------PVFRKKPHPVE-TLKGADVHLECELQGTPPFQ-VSW 226

Query: 260 AFNNSDTAPRPLTS---YSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH 315
             +      R L S   Y I  +   +          + G   C A N+ GS    C   
Sbjct: 227 HKDK-----RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYT--CVGS 279

Query: 316 V-VKA 319
           + +KA
Sbjct: 280 ITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 20/190 (10%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGG 188
            L  G    F CH+    P K + W  +   I    +    +     TL +  VT+   G
Sbjct: 16  DLALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74

Query: 189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
            Y C A N  G+  S    L + +           P   +  +      ++E     C +
Sbjct: 75  QYTCYASNVAGK-DSCSAQLGVQE----------PPRFIKKLEPSRIVKQDEHTRYECKI 123

Query: 249 DANPQAQYFTWAFNNSD--TAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG 306
             +P+ +   W  + ++   + +   S+        +   +       G   C A N  G
Sbjct: 124 GGSPEIKV-LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS---GDYTCEAHNAAG 179

Query: 307 SQRTPCTFHV 316
           S  +  +  V
Sbjct: 180 SASSSTSLKV 189

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 75.3 bits (185), Expect = 2e-15
 Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 29/310 (9%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTS--VARYTPTS 78
                 VL+ C V    +  +  W  +      R ++    +  +DG  +  +  ++   
Sbjct: 18  VTGECNVLLKCKVANIKKETHIVWYKDE-----REISVDEKHDFKDGICTLLITEFSKKD 72

Query: 79  ELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDI 138
              Y       ++++G  ++          E    V K         +L      EG+ +
Sbjct: 73  AGIY---EVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALS--ATDLKIQSTAEGIQL 127

Query: 139 YFDCHIQANPPYKKLIWTHNG--ITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAIN 196
           Y            K+ W+HNG  I  S+    G       L +   T +  G Y     +
Sbjct: 128 YSFVTYYVEDL--KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD 185

Query: 197 SQGEGGST---------PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT 247
            +     T                ++        +          +      + + ++C 
Sbjct: 186 GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN 245

Query: 248 VDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307
           V  +P  +  +W  N    A     +   + G T+       S  + G      +N+ GS
Sbjct: 246 VWGDPPPE-VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 304

Query: 308 QRTPCTFHVV 317
           + +  T  V 
Sbjct: 305 ETSDFTVSVF 314

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 21/214 (9%), Positives = 53/214 (24%), Gaps = 54/214 (25%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHSGGLY 190
              ++   C +        ++W  +   IS +    +        TL++   ++   G+Y
Sbjct: 20  GECNVLLKCKVANIKKETHIVWYKDEREISVD---EKHDFKDGICTLLITEFSKKDAGIY 76

Query: 191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA 250
                + +G+  S          + L+  +  E + +  ++    AL    + +  T + 
Sbjct: 77  EVILKDDRGKDKSR---------LKLVDEAFKELMMEVCKKI---ALSATDLKIQSTAEG 124

Query: 251 NPQAQYF---------TWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL--- 298
                +           W+ N        +             R       E   L    
Sbjct: 125 IQLYSFVTYYVEDLKVNWSHNG-----SAIRYSD---------RVKTGVTGEQIWLQINE 170

Query: 299 ----------CWARNEQGSQRTPCTFHVVKAGEC 322
                         + +   +           E 
Sbjct: 171 PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEA 204

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 74.0 bits (181), Expect = 5e-15
 Identities = 50/319 (15%), Positives = 89/319 (27%), Gaps = 38/319 (11%)

Query: 12  PVCKQSQ-QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS 70
             CK+ + + I  +  NE  +  C ++ N      TW  ++S T      +  I      
Sbjct: 4   DKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 63

Query: 71  VARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNAS 130
           +  + P    + G   C  RN     R   +   V+                  + +   
Sbjct: 64  L-WFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE---------NEPNLCYNAQAIFKQ 113

Query: 131 VLNEGVDIYFDCHIQANP-----PYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRH 185
            L    D    C              KL W  +   +  + +         L++ +V   
Sbjct: 114 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-NIHFSGVKDRLIVMNVAEK 172

Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDE---PVCKQSQQRIYGALRNEQV 242
             G Y C A  +            I +++  I    ++   PV               Q+
Sbjct: 173 HRGNYTCHASYTYLGKQY-----PITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQI 227

Query: 243 LVSCTVDANPQAQYFTWAFNNS---DTAPRPLTSYSIQDGSTSVARYTPTSELE------ 293
            + C V          W +N S   +  P     Y   +   +  R T  + L       
Sbjct: 228 QLICNVTGQLSDI-AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES 286

Query: 294 ---YGTLLCWARNEQGSQR 309
                   C+A+N  G   
Sbjct: 287 RFYKHPFTCFAKNTHGIDA 305

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 47/297 (15%), Positives = 86/297 (28%), Gaps = 26/297 (8%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI--QDGSTSVARYTPTSELE 81
               E     C V  + + +  +W   N           S+   D  +S       +  +
Sbjct: 14  ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73

Query: 82  YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFD 141
            G   C    E G Q        +     +  + K +   +           EG D    
Sbjct: 74  AGIYKCVVTAEDGTQSEATVNVKIF----QKLMFKNAPTPQ--------EFKEGEDAVIV 121

Query: 142 CHIQANPPYKKLIWTHNGITISNNASA-GRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
           C + ++ P   +IW H G  +         +++N  L ++ + +   G Y C        
Sbjct: 122 CDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180

Query: 201 GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA 260
             +        K + +I N       +QS      A   + V + C  D  P+    +W 
Sbjct: 181 EINF-------KDIQVIVNVPPTVQARQSIVNAT-ANLGQSVTLVCDADGFPEPT-MSWT 231

Query: 261 FNNSDTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
            +              I    +S        + +    +C A N+ G Q       V
Sbjct: 232 KDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 21/193 (10%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGRIITNQ----TLVLQSVTRH 185
            ++ G   +F C +  +   K + W   NG  +S N     ++ N     TL + +    
Sbjct: 13  EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72

Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS 245
             G+Y C      G       ++ I     L+F   + P     Q+   G    E  ++ 
Sbjct: 73  DAGIYKCVVTAEDGTQSEATVNVKIF--QKLMF--KNAP---TPQEFKEG----EDAVIV 121

Query: 246 CTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWARNE 304
           C V ++       W     D   +    + +   +   +     T E   GT  C  R  
Sbjct: 122 CDVVSSLPPTI-IWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE---GTYRCEGRIL 177

Query: 305 QGSQRTPCTFHVV 317
              +       V+
Sbjct: 178 ARGEINFKDIQVI 190

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 37/193 (19%), Positives = 58/193 (30%), Gaps = 14/193 (7%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE-Y 82
            +        C    +P+ +   W       + +        DGS SV R  P       
Sbjct: 18  GVSGGVASFICQATGDPRPK-IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDE 76

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
               C A N  G         V    E + P   P++ +         V          C
Sbjct: 77  AIYECVASNNVGEISVSTRLTV--LREDQIPRGFPTIDMGP---QLKVV-ERTRTATMLC 130

Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIIT-----NQTLVLQSVTRHSGGLYACSAINS 197
               NP   ++ W  + + +  + + GRI          L ++       G Y C A NS
Sbjct: 131 AASGNPD-PEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNS 189

Query: 198 QGEGGSTPFDLNI 210
            G   S P +L +
Sbjct: 190 AGTRYSAPANLYV 202

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 72.6 bits (178), Expect = 3e-14
 Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 31/290 (10%)

Query: 24  ALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEY 82
                 + + C      P      W  ++     +        +G    +          
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVI-FWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDM--Q 184

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
               C AR    +         +K        ++    +      ++ ++  G+D+  +C
Sbjct: 185 TDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLEC 244

Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG 202
                P    + W   G  + ++  A     N+ L + +V+    G Y C A N  G   
Sbjct: 245 IASGVPT-PDIAWYKKGGDLPSD-KAKFENFNKALRITNVSEEDSGEYFCLASNKMGS-- 300

Query: 203 STPFDLNINKMVNLIFNS----IDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT 258
                  I   +++   +    +DEP   ++     G    E   + C  + NP+     
Sbjct: 301 -------IRHTISVRVKAAPYWLDEP---KNLILAPG----EDGRLVCRANGNPKPTV-Q 345

Query: 259 WAFNNSDTAPRPLTSY-SIQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307
           W  N       P      +   +        +S        C   NE G 
Sbjct: 346 WMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSR---AVYQCNTSNEHGY 392

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 72.6 bits (178), Expect = 3e-14
 Identities = 51/299 (17%), Positives = 90/299 (30%), Gaps = 24/299 (8%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGSTSVARYTPTSELE 81
               + +L+ C    NP   +  W  N+     A  P  S   + G+  +   +     E
Sbjct: 29  VDPRDNILIECEAKGNPAPSF-HWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEE 87

Query: 82  Y-GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
           Y G   C+ARN+ G   +     +  +             +    NL+  V+ EG  +  
Sbjct: 88  YEGEYQCFARNKFGTALS-NRIRLQVSK----------SPLWPKENLDPVVVQEGAPLTL 136

Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRH-SGGLYACSAINSQG 199
            C+     P   + W  + +             N  L   +V        Y+C+A     
Sbjct: 137 QCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFT 196

Query: 200 E--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF 257
                  PF L +     +   +      + +       LR   +L+ C     P     
Sbjct: 197 HTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQM-VLRGMDLLLECIASGVPTPD-I 254

Query: 258 TWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
            W     D  P     +   + +  +   +       G   C A N+ GS R   +  V
Sbjct: 255 AWYKKGGD-LPSDKAKFENFNKALRITNVSEEDS---GEYFCLASNKMGSIRHTISVRV 309

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 29/195 (14%), Positives = 54/195 (27%), Gaps = 21/195 (10%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNG--ITISNNASAGRIITNQTLVLQSVTRHS-- 186
           +++   +I  +C  + NP      WT N     I+ +        + TLV+   +     
Sbjct: 28  IVDPRDNILIECEAKGNPAP-SFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPE 86

Query: 187 --GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLV 244
              G Y C A N  G   S    L ++K              K++   +        + +
Sbjct: 87  EYEGEYQCFARNKFGTALSNRIRLQVSKS---------PLWPKENLDPVV-VQEGAPLTL 136

Query: 245 SCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN 303
            C      P      W  ++ +   +        +G    +              C AR 
Sbjct: 137 QCNPPPGLPSPVI-FWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQD--MQTDYSCNARF 193

Query: 304 EQGSQRTPCTFHVVK 318
                        +K
Sbjct: 194 HFTHTIQQKNPFTLK 208

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 68.4 bits (167), Expect = 7e-14
 Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 35/188 (18%)

Query: 25  LRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVA-RYTPTSELEYG 83
            + E V ++C  +   +     W F+N   +    +S +I +     +  Y         
Sbjct: 17  FKGENVTLTCNGNNFFEVSSTKW-FHNGSLSEETNSSLNIVNAKFEDSGEYK-------- 67

Query: 84  TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
              C  +                      PV        L    +A V+ EG  ++  CH
Sbjct: 68  ---CQHQQ----------------VNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH 108

Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGS 203
              N    K+I+  +G  +           N  + + + T    G Y C+    Q +  S
Sbjct: 109 GWRNWDVYKVIYYKDGEALKYWYE------NHNISITNATVEDSGTYYCTGKVWQLDYES 162

Query: 204 TPFDLNIN 211
            P ++ + 
Sbjct: 163 EPLNITVI 170

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 56.8 bits (137), Expect = 7e-10
 Identities = 30/197 (15%), Positives = 52/197 (26%), Gaps = 40/197 (20%)

Query: 115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN 174
            KP V +    N   + + +G ++   C+           W HNG             TN
Sbjct: 3   QKPKVSL----NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TN 50

Query: 175 QTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIY 234
            +L + +      G Y C          S P  L +     L+  S  E V         
Sbjct: 51  SSLNIVNAKFEDSGEYKCQHQQV---NESEPVYLEVFSDWLLLQAS-AEVV--------- 97

Query: 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YSIQDGSTSVA-RYTPTSEL 292
             +  + + + C    N       +  +             SI + +   +  Y      
Sbjct: 98  --MEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYY----- 150

Query: 293 EYGTLLCWARNEQGSQR 309
                 C  +  Q    
Sbjct: 151 ------CTGKVWQLDYE 161

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 67.9 bits (166), Expect = 1e-13
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 15/178 (8%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGST-SVARYTPTSELEY 82
             + E   V C V ++P     +W ++N          +++   +   +     + E   
Sbjct: 14  FKQGEDAEVVCRVSSSPAPAV-SWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE--- 69

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
           G   C  R E   +       V+        V+ P   I + +    +    G ++ F C
Sbjct: 70  GIYRCEGRVEARGEIDFRDIIVI--------VNVPPA-ISMPQKSFNATAERGEEMTFSC 120

Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
               +P    + W  NG  I  N       +N  L ++++    GG Y C A N  GE
Sbjct: 121 RASGSPE-PAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE 177

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 57.5 bits (139), Expect = 5e-10
 Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 20/181 (11%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG-RIITNQTLVLQSVTRHSGGLYAC 192
           +G D    C + ++P    + W ++   ++  +     ++ N  L + ++ +   G+Y C
Sbjct: 16  QGEDAEVVCRVSSSPA-PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 74

Query: 193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252
                              + + +I N        Q       A R E++  SC    +P
Sbjct: 75  EGRVEARGEIDF-------RDIIVIVNVPPAISMPQKSFNAT-AERGEEMTFSCRASGSP 126

Query: 253 QAQYFTWAFNNSDTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
           +    +W  N      + +     Y ++  +T +         + G  +C A N+ G   
Sbjct: 127 EPA-ISWFRNG-----KLIEENEKYILKGSNTEL-TVRNIINSDGGPYVCRATNKAGEDE 179

Query: 310 T 310
            
Sbjct: 180 K 180

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 67.4 bits (164), Expect = 2e-13
 Identities = 27/194 (13%), Positives = 56/194 (28%), Gaps = 27/194 (13%)

Query: 130 SVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGG 188
           +V + G  I   C +  +        W   G+ +  +A     +  Q    +  +    G
Sbjct: 8   TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-----LPGQKTEFKVDSDDQWG 62

Query: 189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
            Y+C  +      G+    L+    V  + +S                   E  ++ C  
Sbjct: 63  EYSCVFLPE--PMGTANIQLHGPPRVKAVKSSEH-------------INEGETAMLVCKS 107

Query: 249 DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYT------PTSELEYGTLLCWAR 302
           ++ P    + W           +     +   +S    +         E + G   C   
Sbjct: 108 ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGT 167

Query: 303 NEQGSQRTPCTFHV 316
           + +GS +   T  V
Sbjct: 168 SSKGSDQAIITLRV 181

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 28/187 (14%), Positives = 53/187 (28%), Gaps = 35/187 (18%)

Query: 25  LRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVA-RYTPTSELEYG 83
           L+ + V ++C    +P++    W  N +   P           + + +  YT        
Sbjct: 17  LQEDSVTLTCQGARSPESDSIQWFHNGN-LIPTHTQPSYRFKANNNDSGEYT-------- 67

Query: 84  TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
              C       +   P    V+         +   +Q             EG  I   CH
Sbjct: 68  ---CQTGQ--TSLSDPVHLTVL--------FEWLVLQTP------HLEFQEGETIMLRCH 108

Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGS 203
              + P  K+ +  NG +   +        + T  +        G Y C+         S
Sbjct: 109 SWKDKPLVKVTFFQNGKSQKFSHL------DPTFSIPQANHSHSGDYHCTGNIGYTLFSS 162

Query: 204 TPFDLNI 210
            P  + +
Sbjct: 163 KPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 25/178 (14%), Positives = 42/178 (23%), Gaps = 36/178 (20%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS 193
           +   +   C    +P    + W HNG  I            Q         +  G Y C 
Sbjct: 18  QEDSVTLTCQGARSPESDSIQWFHNGNLIPT--------HTQPSYRFKANNNDSGEYTCQ 69

Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253
              +     S P  L +     ++     E                E +++ C    +  
Sbjct: 70  TGQTS---LSDPVHLTVLFEWLVLQTPHLE------------FQEGETIMLRCHSWKDKP 114

Query: 254 AQYFTWAFNNSDTAPRPLTS-YSIQDGSTSVA-RYTPTSELEYGTLLCWARNEQGSQR 309
               T+  N        L   +SI   + S +  Y            C          
Sbjct: 115 LVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYH-----------CTGNIGYTLFS 161

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 67.6 bits (165), Expect = 4e-13
 Identities = 41/292 (14%), Positives = 71/292 (24%), Gaps = 60/292 (20%)

Query: 25  LRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 84
            + E V + C V   P +    W  N          +      S  +   +     EY  
Sbjct: 14  FQEETVTLHCEVLHLPGSSSTQWFLNG-----TATQT---STPSYRITSASVNDSGEY-- 63

Query: 85  LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
             C       +       H               +Q+       + V  EG  +   CH 
Sbjct: 64  -RCQRGLSGRSDPIQLEIHR----------GWLLLQVS------SRVFTEGEPLALRCHA 106

Query: 145 QANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
             +     +++  NG              N  L +        G Y CS +       S 
Sbjct: 107 WKDKLVYNVLYYRNGKAFKFFHW------NSNLTILKTNISHNGTYHCSGMGKHRY-TSA 159

Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA--QYFTWAFN 262
              + + ++      +        +   + G      V +SC      Q       ++F 
Sbjct: 160 GISVTVKELFPAPVLNA-----SVTSPLLEG----NLVTLSCETKLLLQRPGLQLYFSFY 210

Query: 263 NSDTAPRPLTS---YSIQDGSTSVA-RYTPTSELEYGTLLCWARNEQGSQRT 310
                 R   +   Y I       +  Y            C A  E G+   
Sbjct: 211 MGSKTLRGRNTSSEYQILTARREDSGLYW-----------CEAATEDGNVLK 251

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 25/187 (13%), Positives = 44/187 (23%), Gaps = 26/187 (13%)

Query: 27  NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVA-RYTPTSELEYGT 84
            E + + C    +       +  N          S  +I   + S    Y          
Sbjct: 97  GEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYH--------- 147

Query: 85  LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
             C    +        +  V            P +          S L EG  +   C  
Sbjct: 148 --CSGMGKHRYTSAGISVTVK------ELFPAPVLNAS-----VTSPLLEGNLVTLSCET 194

Query: 145 QANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
           +       L    +      + +     T+    + +  R   GLY C A    G     
Sbjct: 195 KLLLQRPGLQLYFSFY--MGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKR 252

Query: 205 PFDLNIN 211
             +L + 
Sbjct: 253 SPELELQ 259

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 66.5 bits (162), Expect = 5e-13
 Identities = 23/185 (12%), Positives = 56/185 (30%), Gaps = 19/185 (10%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSIQ-DGSTSVARYT--PTSELE 81
           +          +  A+   + FN      + +     Y +  D +T +         + +
Sbjct: 19  QVRFWMQAEKLSGNAKV-NYIFNE-----KEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 72

Query: 82  YGTLLCWARNEQGNQRTPCTFHV--VKAGECEHPVDKPSVQIKLG----RNLNASVLNEG 135
            GT     ++ +    +         K  + E    +     K G      L+  V    
Sbjct: 73  EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV-TGE 131

Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI 195
            ++   C +        ++W  +   IS +          TL++   ++   G+Y     
Sbjct: 132 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 191

Query: 196 NSQGE 200
           + +G+
Sbjct: 192 DDRGK 196

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 26/208 (12%), Positives = 61/208 (29%), Gaps = 25/208 (12%)

Query: 125 RNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQ 180
           ++  A  + E   + F    +      K+ +  N   I         I        + ++
Sbjct: 7   KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME 66

Query: 181 SVTRHSGGLYACSAINSQGEGGST--PFDLNINKMVNLIFNSIDEPVCKQ----SQQRIY 234
            +     G Y     + +    ST         K+         E + KQ     +   +
Sbjct: 67  KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 126

Query: 235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS---YSIQDGSTS--VARYTPT 289
                  VL+ C V    +  +  W  +      R ++    +  +DG  +  +  ++  
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDE-----REISVDEKHDFKDGICTLLITEFSKK 181

Query: 290 SELEYGTLLCWARNEQGSQRTPCTFHVV 317
               Y       ++++G  +      +V
Sbjct: 182 DAGIYE---VILKDDRGKDK--SRLKLV 204

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 68.4 bits (166), Expect = 7e-13
 Identities = 40/295 (13%), Positives = 72/295 (24%), Gaps = 27/295 (9%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
             R   VLV+C+     Q                PL    +     +   Y  ++  E  
Sbjct: 11  LPRGGSVLVTCSTSC-DQPMLLGI--------ETPLPKKELLLPGNNRKVYELSNVQEDS 61

Query: 84  TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
             +C++    G         V          ++  +          S    G ++   C 
Sbjct: 62  QPMCYSNCPDGQSTAKTFLTV------YWTPERVELAP------LPSWQPVGKNLTLRCQ 109

Query: 144 IQANPP--YKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
           ++   P     ++       +    + G      T  +     H G  ++C         
Sbjct: 110 VEGGAPRANLTVVLLRGEKELKREPAVGEP-AEVTTTVLVRRDHHGANFSCRTELDLRPQ 168

Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF 261
           G   F+   N        +   P              + Q  V C++D            
Sbjct: 169 GLELFE---NTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225

Query: 262 NNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
              D    P  +Y     S   +      +     L C       SQ T  T  +
Sbjct: 226 ALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 67.6 bits (164), Expect = 1e-12
 Identities = 45/308 (14%), Positives = 78/308 (25%), Gaps = 47/308 (15%)

Query: 10  DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGST 69
             P              + Q  V C++D                    P  +Y     S 
Sbjct: 186 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 245

Query: 70  SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
             +      +     L C       +Q T  T  +       +    P+V       L  
Sbjct: 246 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI-------YSFPAPNV------ILTK 292

Query: 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGL 189
             ++EG ++   C          +              A  +     L+L++    +G  
Sbjct: 293 PEVSEGTEVTVKCEAHPRAK---VTLNG--------VPAQPLGPRAQLLLKATPEDNGRS 341

Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQ-RIYGALRNEQVLVSCTV 248
           ++CSA               I+K        +  P   +      +    N Q    C  
Sbjct: 342 FSCSATLEVAGQ-------LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA 394

Query: 249 DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ 308
             NP  +      + +   P   +                 +    GT LC AR+ QG  
Sbjct: 395 WGNPLPEL-KCLKDGTFPLPIGES--------------VTVTRDLEGTYLCRARSTQGEV 439

Query: 309 RTPCTFHV 316
               T +V
Sbjct: 440 TREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 55.3 bits (132), Expect = 1e-08
 Identities = 31/210 (14%), Positives = 51/210 (24%), Gaps = 37/210 (17%)

Query: 2   VNLIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS 61
             +   S   P    ++  +       +V V C      +    T     +         
Sbjct: 276 QTVTIYSFPAPNVILTKPEV---SEGTEVTVKCEAHPRAK---VTLNGVPAQPL------ 323

Query: 62  YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQI 121
                G  +      T E    +  C A  E   Q                 +  P +  
Sbjct: 324 -----GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE-----LRVLYGPRLDE 373

Query: 122 KLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQS 181
           +           E       C    NP  + L    +G                     +
Sbjct: 374 RDCPG--NWTWPENSQQTPMCQAWGNPLPE-LKCLKDGTFPL-----------PIGESVT 419

Query: 182 VTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
           VTR   G Y C A ++QGE  +    +N+ 
Sbjct: 420 VTRDLEGTYLCRARSTQGE-VTREVTVNVL 448

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 50.3 bits (119), Expect = 4e-07
 Identities = 27/293 (9%), Positives = 61/293 (20%), Gaps = 35/293 (11%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLL 86
           + + + C V+        T          + L     + + +          +       
Sbjct: 102 KNLTLRCQVEGGAPRANLTVVLLRGE---KELKREPAVGEPAEVTTTVLVRRDHHGANFS 158

Query: 87  CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
           C    +   Q      +     + +  V   +        ++  VL         C +  
Sbjct: 159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQ----LVSPRVLEVDTQGTVVCSLDG 214

Query: 147 NPPYKK--LIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST 204
             P  +  +        ++   + G    +    +       G     +     G     
Sbjct: 215 LFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGT-QRLTCAVILGNQSQE 273

Query: 205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS 264
                      +   S   P    ++  +       +V V C      +    T     +
Sbjct: 274 TL-------QTVTIYSFPAPNVILTKPEV---SEGTEVTVKCEAHPRAK---VTLNGVPA 320

Query: 265 DTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
                         G  +      T E    +  C A  E   Q         
Sbjct: 321 QPL-----------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 67.0 bits (163), Expect = 8e-13
 Identities = 49/291 (16%), Positives = 80/291 (27%), Gaps = 49/291 (16%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE-YGTLL 86
            Q  V C++D                    P  +Y   D  ++ A  + T+E E    L 
Sbjct: 19  TQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYG-NDSFSAKASVSVTAEDEGTQRLT 77

Query: 87  CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
           C       +Q T  T  +         + KP V              EG ++   C    
Sbjct: 78  CAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS-------------EGTEVTVKCEAHP 124

Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINS-QGEGGSTP 205
                    T NG+         +++   T         +G  ++CSA     G+     
Sbjct: 125 RAK-----VTLNGVPAQPLGPRAQLLLKAT------PEDNGRSFSCSATLEVAGQLIHKN 173

Query: 206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD 265
               +  +     +  D P    +         N Q    C    NP  +      + + 
Sbjct: 174 QTRELRVLYGPRLDERDCP---GNWT----WPENSQQTPMCQAWGNPLPEL-KCLKDGTF 225

Query: 266 TAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
             P   +                 +    GT LC AR+ QG      T +V
Sbjct: 226 PLPIGES--------------VTVTRDLEGTYLCRARSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 35/188 (18%), Positives = 52/188 (27%), Gaps = 34/188 (18%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
                +V V C      +    T     +G   +PL       G  +      T E    
Sbjct: 110 VSEGTEVTVKCEAHPRAK---VTL----NGVPAQPL-------GPRAQLLLKATPEDNGR 155

Query: 84  TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
           +  C A  E   Q       + K    E  V       +     N +   E       C 
Sbjct: 156 SFSCSATLEVAGQ------LIHKNQTRELRVLYGPRLDERDCPGNWTWP-ENSQQTPMCQ 208

Query: 144 IQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGS 203
              NP   +L    +G                     +VTR   G Y C A ++QGE  +
Sbjct: 209 AWGNPL-PELKCLKDGTFPL-----------PIGESVTVTRDLEGTYLCRARSTQGE-VT 255

Query: 204 TPFDLNIN 211
               +N+ 
Sbjct: 256 REVTVNVL 263

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 43/189 (22%), Positives = 66/189 (34%), Gaps = 21/189 (11%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
           AL  E     C V++ PQ +  +W  N         T YSI++ +  +       + + G
Sbjct: 19  ALVEEVATFMCAVESYPQPEI-SWTRNKILIKLFD-TRYSIRE-NGQLLTILSVEDSDDG 75

Query: 84  TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH 143
              C A N  G     C    VK         KP +     R      + EG+     C 
Sbjct: 76  IYCCTANNGVGGAVESCGALQVKM--------KPKIT----RPPINVKIIEGLKAVLPCT 123

Query: 144 IQANPPYKKLIWTHNGITISNNASAGR--IITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
              NP    + W      +  N    R  ++ + +L + +V +   G Y C A NS G  
Sbjct: 124 TMGNPKPS-VSWIKGDSALREN---SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179

Query: 202 GSTPFDLNI 210
            S    L +
Sbjct: 180 YSKLVKLEV 188

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 65.7 bits (160), Expect = 1e-12
 Identities = 30/195 (15%), Positives = 52/195 (26%), Gaps = 33/195 (16%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS 193
            G  +   C    +P  +   W      I N            L+  +V     G Y C 
Sbjct: 32  AGQFVKLCCRATGHPFVQ-YQWFKMNKEIPNG-------NTSELIFNAVHVKDAGFYVCR 83

Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCK--------QSQQRIYGALRNEQVLVS 245
             N+     S    L++  +      S+D              SQ+ + G      +++ 
Sbjct: 84  VNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPG----STLVLQ 139

Query: 246 CTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTS-VARYTPTSELEYGTLLCWARNE 304
           C    +P   Y  W  N           Y +          Y            C   N+
Sbjct: 140 CVAVGSPIPHY-QWFKNELPLTHETKKLYMVPYVDLEHQGTYW-----------CHVYND 187

Query: 305 QGSQRTPCTFHVVKA 319
           + SQ +     ++  
Sbjct: 188 RDSQDSKKVEIIIDE 202

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 22/191 (11%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
            L  + V + C    +P  QY  W   N            I +G+TS   +      + G
Sbjct: 30  VLAGQFVKLCCRATGHPFVQY-QWFKMNK----------EIPNGNTSELIFNAVHVKDAG 78

Query: 84  TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGR---NLNASVLNEGVDIYF 140
             +C   N    + +  +   V             V     +      +  L  G  +  
Sbjct: 79  FYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVL 138

Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE 200
            C    +P      W  N + +++        T +  ++  V     G Y C   N +  
Sbjct: 139 QCVAVGSPI-PHYQWFKNELPLTHE-------TKKLYMVPYVDLEHQGTYWCHVYNDRDS 190

Query: 201 GGSTPFDLNIN 211
             S   ++ I+
Sbjct: 191 QDSKKVEIIID 201

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 45/296 (15%), Positives = 89/296 (30%), Gaps = 30/296 (10%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ-DGSTSVARYTPTSELEY 82
               E    +CT    P++    W +N  G          +Q +G  S       +  + 
Sbjct: 16  LSVGESKFFTCTAIGEPES--IDW-YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDA 72

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
           G   C A + +G  +       +          K + +  +          +G D    C
Sbjct: 73  GIYRCQATDAKGQTQEATVVLEIYQ--------KLTFREVV-SPQ---EFKQGEDAEVVC 120

Query: 143 HIQANPPYKKLIWTHNGITISNNASAG-RIITNQTLVLQSVTRHSGGLYACSAINSQGEG 201
            + ++P    + W ++   ++  +     ++ N  L + ++ +   G+Y C         
Sbjct: 121 RVSSSPA-PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGE 179

Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF 261
                     + + +I N        Q       A R E++  SC    +P+    +W  
Sbjct: 180 IDF-------RDIIVIVNVPPAISMPQKSFNAT-AERGEEMTFSCRASGSPEPA-ISWFR 230

Query: 262 NNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
           N             I  GS +          + G  +C A N+ G         V 
Sbjct: 231 NGK---LIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 61.4 bits (149), Expect = 6e-11
 Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 27/194 (13%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGRIIT-----NQTLVLQSVTR 184
            L+ G   +F C     P    + W +  G  I +     R++         L + +   
Sbjct: 15  ELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIIST---QRVVVQKEGVRSRLTIYNANI 69

Query: 185 HSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLV 244
              G+Y C A +++G+       L I     L F   +       Q+   G    E   V
Sbjct: 70  EDAGIYRCQATDAKGQTQEATVVLEIY--QKLTF--REVV---SPQEFKQG----EDAEV 118

Query: 245 SCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWARN 303
            C V ++P     +W ++N +        +++   +   +     + E   G   C  R 
Sbjct: 119 VCRVSSSPAPAV-SWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE---GIYRCEGRV 174

Query: 304 EQGSQRTPCTFHVV 317
           E   +       V+
Sbjct: 175 EARGEIDFRDIIVI 188

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 66.3 bits (161), Expect = 2e-12
 Identities = 40/300 (13%), Positives = 73/300 (24%), Gaps = 48/300 (16%)

Query: 27  NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 86
            + + ++C            W F                  +  +      +    GT  
Sbjct: 27  GDTLSLTCIDPDF-----VRWTF------KTYFNEMVENKKNEWIQEKAEATRT--GTYT 73

Query: 87  CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
           C   N   +     + +V         V  P+    +G  L      E  D    C +  
Sbjct: 74  CSNSNGLTS-----SIYVF--------VRDPAKLFLVGLPL---FGKEDSDALVRCPL-T 116

Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTR-HSGGLYACSAINSQGEGGSTP 205
           +P   +                        + +++V R +      C+A        S  
Sbjct: 117 DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK 176

Query: 206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD 265
           F L + + +  I                +   + +   V CT+     +    W   N  
Sbjct: 177 FTLKVREAIKAIPVVSVPET-------SHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ 229

Query: 266 TAPRPLTSYSIQDGSTSVARYTPTSELE--------YGTLLCWARNEQGSQRTPCTFHVV 317
                   ++          Y     L          G  +C+A N  GS     T  VV
Sbjct: 230 PQHIAQVKHNS--WHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 66.6 bits (162), Expect = 2e-12
 Identities = 32/307 (10%), Positives = 88/307 (28%), Gaps = 31/307 (10%)

Query: 27  NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ-DGSTSVARYTPTSELEYGTL 85
              +   C     P+++ F+W+ +    +        ++  G+ +   +      + G  
Sbjct: 18  VISLNFECDK-MTPKSE-FSWSKD--YVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIY 73

Query: 86  LCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145
            C   +  G   +                +     + +   L   +L +G   ++    +
Sbjct: 74  SCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEK 133

Query: 146 ANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGGLYACSAINSQGEG 201
            +   K + +  N   I         I        + ++ +     G Y     + +   
Sbjct: 134 LSGNAK-VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN 192

Query: 202 GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIY-------GALRNEQVLVSCTVDANPQA 254
            ST   L  +    L   +  +      +Q  +              VL+ C V    + 
Sbjct: 193 HST-VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE 251

Query: 255 QYFTWAFNNSDTAPRPLTS---YSIQDGSTS--VARYTPTSELEYGTLLCWARNEQGSQR 309
            +  W  +      R ++    +  +DG  +  +  ++      Y       ++++G  +
Sbjct: 252 THIVWYKDE-----REISVDEKHDFKDGICTLLITEFSKKDAGIY---EVILKDDRGKDK 303

Query: 310 TPCTFHV 316
           +      
Sbjct: 304 SRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 32/238 (13%)

Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSG 187
           +  + + F+C         +  W+ + ++  ++    R+          +  + +     
Sbjct: 16  DGVISLNFECDKMTPKS--EFSWSKDYVSTEDS---PRLEVESKGNKTKMTFKDLGMDDL 70

Query: 188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT 247
           G+Y+C   ++ G   S   D    K +  + +    P      +     L   QV     
Sbjct: 71  GIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQ 130

Query: 248 VD-ANPQAQYFTWAFNNSDTAPRPLTS---YSIQ-DGSTSVARYT---PTSELEYGTLLC 299
            +  +  A+   + FN      + +     Y +  D +T +          E E GT   
Sbjct: 131 AEKLSGNAK-VNYIFNE-----KEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDE-GTYTF 183

Query: 300 WARNEQGSQRTPCTFHVVKAGECEHPVAVSHRYVAKLYATNAKGAGPMVLMKTNTEVT 357
             ++ + +  +          + +       +          +  GP  +   + EVT
Sbjct: 184 QLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEW-------IRKQGPHFVEYLSWEVT 234

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 42/198 (21%), Positives = 64/198 (32%), Gaps = 23/198 (11%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN----QTLVLQSVTRHS 186
            +  G    F C  + +PP   ++W  NG  +S   S   ++        L ++ V    
Sbjct: 17  GVRVGGVASFYCAARGDPP-PSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGR 75

Query: 187 -GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS 245
               Y C A N  G+  S    L I +           PV  Q             VL++
Sbjct: 76  DDAPYECVAENGVGDAVSADATLTIYEGDKT---PAGFPVITQGPGTRV-IEVGHTVLMT 131

Query: 246 CTVDANPQAQYFTWAFNNSDTAPRPLTS----YSIQDGSTSVARYTPTSELEYGTLLCWA 301
           C    NP      W  N        +      YS++DG   +       +   G   C A
Sbjct: 132 CKAIGNPTPN-IYWIKNQ-----TKVDMSNPRYSLKDGFLQIENSREEDQ---GKYECVA 182

Query: 302 RNEQGSQRTPCTFHVVKA 319
            N  G++ +  T   VK 
Sbjct: 183 ENSMGTEHSKATNLYVKV 200

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 35/192 (18%), Positives = 55/192 (28%), Gaps = 14/192 (7%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI--QDGSTSVARYTPTSELE 81
                     C    +P      W  N    +    + Y++  Q G  S+ R  P     
Sbjct: 18  VRVGGVASFYCAARGDPPPSI-VWRKNGKKVSGTQ-SRYTVLEQPGGISILRIEPVRAGR 75

Query: 82  -YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
                 C A N  G         +      + P   P +     +     V+  G  +  
Sbjct: 76  DDAPYECVAENGVG-DAVSADATLTIYEGDKTPAGFPVIT----QGPGTRVIEVGHTVLM 130

Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIIT-NQTLVLQSVTRHSGGLYACSAINSQG 199
            C    NP    + W  N   +    S  R    +  L +++      G Y C A NS G
Sbjct: 131 TCKAIGNPTPN-IYWIKNQTKVD--MSNPRYSLKDGFLQIENSREEDQGKYECVAENSMG 187

Query: 200 EGGSTPFDLNIN 211
              S   +L + 
Sbjct: 188 TEHSKATNLYVK 199

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 23/184 (12%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGSTSVARYTPTSELE 81
            L          +   P  +  +W  +     T+  P    S  DG   +      ++  
Sbjct: 17  VLEGSTATFEAHISGFPVPE-VSWFRDGQVISTSTLPGVQISFSDGRAKL-TIPAVTKAN 74

Query: 82  YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFD 141
            G     A N  G   +     V            P+   +L +++      +G  +   
Sbjct: 75  SGRYSLKATNGSGQATSTAELLVKAETA------PPNFVQRL-QSMTV---RQGSQVRLQ 124

Query: 142 CHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSGGLYACSAIN 196
             +   P    + +  +G  I ++        +Q     +L++        G Y+ +A N
Sbjct: 125 VRVTGIPTPV-VKFYRDGAEIQSS---LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180

Query: 197 SQGE 200
           S G 
Sbjct: 181 SVGR 184

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 57.0 bits (138), Expect = 7e-10
 Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 26/192 (13%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGGL 189
           EG    F+ HI   P   ++ W  +G  IS +   G  I+       L + +VT+ + G 
Sbjct: 19  EGSTATFEAHISGFPV-PEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGR 77

Query: 190 YACSAINSQGEGGSTPFDLNINKMVNL-IFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
           Y+  A N  G+  ++  +L +        F  +      QS        +  QV +   V
Sbjct: 78  YSLKATNGSGQA-TSTAELLVKAETAPPNF--VQRL---QSMT----VRQGSQVRLQVRV 127

Query: 249 DANPQAQYFTWAFNNSDTAPRPLTS---YSI-QDGSTSVARYTPTSELEYGTLLCWARNE 304
              P      +  +        + S   + I Q+G             + GT    A N 
Sbjct: 128 TGIPTPV-VKFYRDG-----AEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181

Query: 305 QGSQRTPCTFHV 316
            G   +     V
Sbjct: 182 VGRATSTAELLV 193

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 45/315 (14%), Positives = 84/315 (26%), Gaps = 31/315 (9%)

Query: 15  KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ--DGS---T 69
           K+   RI     +    + C    NP  +   W  ++ GTA   +        DG     
Sbjct: 8   KEPTNRID-FSNSTGAEIECKASGNPMPEI-IWIRSD-GTAVGDVPGLRQISSDGKLVFP 64

Query: 70  SVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
                    E+      C ARN+ G+  +      V+A   ++     + +         
Sbjct: 65  PFRAEDYRQEVHAQVYACLARNQFGSIISRDV--HVRAVVAQYYEADVNKE--------- 113

Query: 130 SVLNEGVDIYFDCHIQANPPYKKLI--WTHNG--ITISNNASAGR--IITNQTLVLQSVT 183
             +  G      C I +       +  W  +            G+  ++ +  L ++ V 
Sbjct: 114 -HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 172

Query: 184 RH-SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQV 242
                  Y C   +     G T       ++V     S   P      Q+    +    +
Sbjct: 173 PEDGYKSYQCRTKHRLT--GETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTI 230

Query: 243 LVSCTVDANPQAQYFTWAFNNSDTAP-RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301
            + C     P   +  W      T   + +         +           + G  LC  
Sbjct: 231 SLLCPAQGFPAPSF-RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV 289

Query: 302 RNEQGSQRTPCTFHV 316
            N  G +       V
Sbjct: 290 NNSVGGESVETVLTV 304

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 65.7 bits (160), Expect = 5e-12
 Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 24/194 (12%)

Query: 8   STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAP-RPLTSYSIQD 66
           S+  P      Q+    +    + + C     P   +  W     GT   + +       
Sbjct: 208 SSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSF-RWYKFIEGTTRKQAVVLNDRVK 266

Query: 67  GSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRN 126
             +           + G  LC   N  G +       V             S +I     
Sbjct: 267 QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV---------TAPLSAKID---- 313

Query: 127 LNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS 186
                ++ G    F C    NP  K + W  +G  I ++           L ++SV +  
Sbjct: 314 PPTQTVDFGRPAVFTCQYTGNPI-KTVSWMKDGKAIGHS--------ESVLRIESVKKED 364

Query: 187 GGLYACSAINSQGE 200
            G+Y C   N +  
Sbjct: 365 KGMYQCFVRNDRES 378

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 39/306 (12%), Positives = 78/306 (25%), Gaps = 64/306 (20%)

Query: 24  ALRNEQVLVSCTVD---ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT--PTS 78
            +R    ++ C +    A+      +W  +              +       +Y   P+ 
Sbjct: 115 VIRGNSAVIKCLIPSFVADFVEVV-SWHTDE-----EENYFPGAEYDG----KYLVLPSG 164

Query: 79  ELE---------YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNA 129
           EL          Y +  C  ++    +                    P     + + L  
Sbjct: 165 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 224

Query: 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNA----SAGRIITNQTLVLQSVTRH 185
            V      I   C  Q  P      W       +       +      + TL+++     
Sbjct: 225 MV---AHTISLLCPAQGFPA-PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280

Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNS----IDEPVCKQSQQRIYGALRNEQ 241
             G Y C   NS G           +    L   +      +P    +Q   +G      
Sbjct: 281 DSGKYLCVVNNSVGG---------ESVETVLTVTAPLSAKIDP---PTQTVDFG----RP 324

Query: 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301
            + +C    NP     +W  +      + +      +    +       +  Y    C+ 
Sbjct: 325 AVFTCQYTGNPIKTV-SWMKDG-----KAIGH---SESVLRIESVKKEDKGMYQ---CFV 372

Query: 302 RNEQGS 307
           RN++ S
Sbjct: 373 RNDRES 378

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 66.0 bits (160), Expect = 3e-12
 Identities = 39/305 (12%), Positives = 77/305 (25%), Gaps = 27/305 (8%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT----PTSE 79
            L    +  + +   +       W +           ++ + +   S  +      PT  
Sbjct: 30  PLFEHFLKFNYSTAHSAGLTL-IWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLL 88

Query: 80  LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
            + G   C  RN     +      VV+   C +   K  V           +        
Sbjct: 89  NDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI----TCPN 144

Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQ- 198
            D +  ++     + W      I N  +   I     L        + G Y C     + 
Sbjct: 145 VDGYFPSSVKP-TITWYMGCYKIQNFNN--VIPEGMNLSFLIALISNNGNYTCVVTYPEN 201

Query: 199 GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ--- 255
           G        L +  + +                 +Y     E++L+ CTV  +       
Sbjct: 202 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPN-DHVVYEKEPGEELLIPCTVYFSFLMDSRN 260

Query: 256 YFTWAFNNSD-TAPRPLTSYSIQDGSTSVARYTPTSEL---------EYGTLLCWARNEQ 305
              W  +           + +     +     T T  L            + +C AR+ +
Sbjct: 261 EVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK 320

Query: 306 GSQRT 310
           G    
Sbjct: 321 GEVAK 325

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 25/193 (12%)

Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGG 188
              +    C +  +P P   + W   G  I  +    RI   +     L++ SVT     
Sbjct: 18  YQSNATLVCKVTGHPKP--IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDAT 75

Query: 189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV 248
           +Y   A N  G   S    L +      +   I  P   +    ++ ALR E V +    
Sbjct: 76  VYQVRATNQGGS-VSGTASLEV-----EVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPF 128

Query: 249 DANPQAQYFTWAFNNSDTAPRPLTS---YSI-QDGSTSVARY-TPTSELEYGTLLCWARN 303
              P     TW           + +   Y +    S +   +       + G  +  A+N
Sbjct: 129 SGKPDPV-ITWQKGQ-----DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182

Query: 304 EQGSQRTPCTFHV 316
             G  +      V
Sbjct: 183 RFGIDQKTVELDV 195

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 62.5 bits (152), Expect = 8e-12
 Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 21/193 (10%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGRIITNQ----TLVLQSVTRH 185
            ++ G   +F C +  +   K + W   NG  +S N     ++ N     TL + +    
Sbjct: 13  EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72

Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS 245
             G+Y C      G       ++ I     L+F   + P     Q+   G    E  ++ 
Sbjct: 73  DAGIYKCVVTAEDGTQSEATVNVKIF--QKLMF--KNAP---TPQEFKEG----EDAVIV 121

Query: 246 CTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQ-DGSTSVARYTPTSELEYGTLLCWARNE 304
           C V ++       W     D   +    + +  +    +     T E   GT  C  R  
Sbjct: 122 CDVVSSLPPTI-IWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE---GTYRCEGRIL 177

Query: 305 QGSQRTPCTFHVV 317
              +       V+
Sbjct: 178 ARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 33/182 (18%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI--QDGSTSVARYTPTSELE 81
               E     C V  + + +  +W   N           S+   D  +S       +  +
Sbjct: 14  ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73

Query: 82  YGTLLCWARNEQGNQRTPCTFHVVKAGECEHP--VDKPSVQIKLGRNLNASVLNEGVDIY 139
            G   C    E G Q    T +V      +     + P+ Q             EG D  
Sbjct: 74  AGIYKCVVTAEDGTQSE-ATVNVKIF---QKLMFKNAPTPQ----------EFKEGEDAV 119

Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYACSAINS 197
             C + ++ P   +IW H G  +       R I   N  L ++ + +   G Y C     
Sbjct: 120 IVCDVVSSLPPT-IIWKHKGRDVILKKD-VRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177

Query: 198 QG 199
             
Sbjct: 178 AR 179

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 29/194 (14%), Positives = 51/194 (26%), Gaps = 39/194 (20%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
              N QV + C  +  P  +  TW     G               +   R     +    
Sbjct: 12  TYENGQVTLVCDAEGEPIPE-ITWKRAVDGFTFTE-------GDKSLDGRIEVKGQHGSS 63

Query: 84  TLL-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNAS 130
           +L              C A +  G  +      +            P             
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI---------EYAPKFISN----QTIY 110

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHS 186
              EG  I   C +++NPP   + W  + + +    +      +      L +   + + 
Sbjct: 111 YSWEGNPINISCDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDND 169

Query: 187 GGLYACSAINSQGE 200
            G Y C+A N  G 
Sbjct: 170 FGRYNCTATNHIGT 183

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 24/194 (12%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNG----ITISNNASAGRII-----TNQTLVLQSVTR 184
           E   +   C  +  P   ++ W         T  + +  GRI       + +L ++ V  
Sbjct: 14  ENGQVTLVCDAEGEPI-PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72

Query: 185 HSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLV 244
              G Y C A +  G            K + L       P    +Q   Y +     + +
Sbjct: 73  SDSGRYDCEAASRIG---------GHQKSMYLDIE--YAPKFISNQTIYY-SWEGNPINI 120

Query: 245 SCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQ-DGSTSVARYTPTSELEYGTLLCWARN 303
           SC V +NP A    W  +      +  T+      G   +    PTS+ ++G   C A N
Sbjct: 121 SCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179

Query: 304 EQGSQRTPCTFHVV 317
             G++       + 
Sbjct: 180 HIGTRFQEYILALA 193

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 28/184 (15%), Positives = 48/184 (26%), Gaps = 35/184 (19%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVA-RYTPTSELEYGTLL 86
           + V + C    +P+     W F+N        +SY I   + + +  Y            
Sbjct: 23  DSVTLKCQGAYSPEDNSTQW-FHNESLISSQASSYFIDAATVNDSGEYR----------- 70

Query: 87  CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
           C       +        +         V    + +         V  E   I+  CH   
Sbjct: 71  CQTNLSTLSD----PVQLE--------VHIGWLLL----QAPRWVFKEEDPIHLRCHSWK 114

Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF 206
           N    K+ +  NG              N    +   T    G Y C  +       S   
Sbjct: 115 NTALHKVTYLQNGKDRKYFHH------NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV 168

Query: 207 DLNI 210
           ++ I
Sbjct: 169 NITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 26/178 (14%), Positives = 44/178 (24%), Gaps = 36/178 (20%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS 193
           E   +   C    +P      W HN   IS+           +  + + T +  G Y C 
Sbjct: 21  EKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ--------ASSYFIDAATVNDSGEYRCQ 72

Query: 194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ 253
              S     S P  L ++    L+                      + + + C    N  
Sbjct: 73  TNLST---LSDPVQLEVHIGWLLLQAPRWV------------FKEEDPIHLRCHSWKNTA 117

Query: 254 AQYFTWAFNNSDTAPRPLTS-YSIQDGSTSVA-RYTPTSELEYGTLLCWARNEQGSQR 309
               T+  N  D       S + I   +   +  Y            C       +  
Sbjct: 118 LHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYF-----------CRGLVGSKNVS 164

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 29/185 (15%), Positives = 44/185 (23%), Gaps = 22/185 (11%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARY-----TPTS 78
                   + C V  +P+     W           L  Y IQ+      +      T   
Sbjct: 16  VRYQSNATLVCKVTGHPKPI-VKWYRQGKEIIADGLK-YRIQEFKGGYHQLIIASVTDDD 73

Query: 79  ELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDI 138
              Y      A N+ G+     +  V                ++    +       G  +
Sbjct: 74  ATVY---QVRATNQGGSVSGTASLEVE-----VPAKIHLPKTLEGMGAV---HALRGEVV 122

Query: 139 YFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN---QTLVLQSVTRHSGGLYACSAI 195
                    P    + W      I NN     I+T      +    V R   G Y   A 
Sbjct: 123 SIKIPFSGKPD-PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181

Query: 196 NSQGE 200
           N  G 
Sbjct: 182 NRFGI 186

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 33/178 (18%), Positives = 52/178 (29%), Gaps = 13/178 (7%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT----NQTLVLQSVTRHSGGL 189
              +    C +  +P    + W   G  I  +    RI         L++ SVT     +
Sbjct: 18  YQSNATLVCKVTGHPK-PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATV 76

Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD 249
           Y   A N  G   S    L +      +   I  P   +    ++ ALR E V +     
Sbjct: 77  YQVRATNQGGS-VSGTASLEVE-----VPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPFS 129

Query: 250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS 307
             P     TW                +    TS+         + G  +  A+N  G 
Sbjct: 130 GKPDPV-ITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI 186

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 61.1 bits (148), Expect = 6e-11
 Identities = 33/205 (16%), Positives = 57/205 (27%), Gaps = 32/205 (15%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI---ITNQTLVLQSVTRHSG 187
            +     + F C    NP    + W  NG         G       + +L+++SV     
Sbjct: 30  AVPAANTVKFRCPAGGNPM-PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 88

Query: 188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT 247
           G Y C   N  G        +N    ++++  S   P+ +         +    V   C 
Sbjct: 89  GNYTCVVENEYGS-------INHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK 141

Query: 248 VDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGS--TSVARYTPTSELEYGTLL------- 298
           V ++ Q     W  +          S    DG     V +++  +      L        
Sbjct: 142 VYSDAQPH-IQWIKHVE-----KNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEA 195

Query: 299 ------CWARNEQGSQRTPCTFHVV 317
                 C   N  G         V+
Sbjct: 196 DAGEYICKVSNYIGQANQSAWLTVL 220

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 37/196 (18%), Positives = 53/196 (27%), Gaps = 43/196 (21%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGST----SV-----ARYTP 76
             V   C    NP      W  N        R           +    SV       YT 
Sbjct: 35  NTVKFRCPAGGNPMPTM-RWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT- 92

Query: 77  TSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV 136
                     C   NE G+        VV     E    +P +Q  L  N +      G 
Sbjct: 93  ----------CVVENEYGSINHTYHLDVV-----ERSRHRPILQAGLPANASTV---VGG 134

Query: 137 DIYFDCHIQANPP----------YKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTR 184
           D+ F C + ++                 +  +G+          I +   + L L +VT 
Sbjct: 135 DVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE 194

Query: 185 HSGGLYACSAINSQGE 200
              G Y C   N  G+
Sbjct: 195 ADAGEYICKVSNYIGQ 210

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 35/188 (18%), Positives = 51/188 (27%), Gaps = 32/188 (17%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSI-QDGSTSVARYTPTSE 79
               E   +SC +   P      W         + L     Y +  DG T         +
Sbjct: 19  TKLGEAAQLSCQIVGRPLPDI-KWYRFG-----KELIQSRKYKMSSDGRTHTLTVMTEEQ 72

Query: 80  LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
            + G   C A NE G   T     +        P   P   +K            G  + 
Sbjct: 73  EDEGVYTCIATNEVGEVETSSKLLLQAT-----PQFHPGYPLK-----EKYYGAVGSTLR 122

Query: 140 FDCHIQANP-PYKKLIWTHNGITISNNASAGRII-----TNQTLVLQSVTRHS-GGLYAC 192
                   P P   + W H    + N+     I          LV+++V R +  G Y  
Sbjct: 123 LHVMYIGRPVP--AMTWFHGQKLLQNS---ENITIENTEHYTHLVMKNVQRKTHAGKYKV 177

Query: 193 SAINSQGE 200
              N  G 
Sbjct: 178 QLSNVFGT 185

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 59.7 bits (145), Expect = 9e-11
 Identities = 26/197 (13%), Positives = 48/197 (24%), Gaps = 29/197 (14%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRH 185
               G      C I   P    + W   G  +  +    +   +      TL + +  + 
Sbjct: 18  TTKLGEAAQLSCQIVGRPL-PDIKWYRFGKELIQS---RKYKMSSDGRTHTLTVMTEEQE 73

Query: 186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS 245
             G+Y C A N  GE   T   L +                 + +           + + 
Sbjct: 74  DEGVYTCIATNEVGE-VETSSKLLL-----QATPQFHPGYPLKEKYY---GAVGSTLRLH 124

Query: 246 CTVDANPQAQYFTWAFNNSDTAPRPLTS---YSI--QDGSTSVARYTPTSELEYGTLLCW 300
                 P     TW         + L +    +I   +  T +       +   G     
Sbjct: 125 VMYIGRPVPAM-TWFHGQ-----KLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQ 178

Query: 301 ARNEQGSQRTPCTFHVV 317
             N  G+        + 
Sbjct: 179 LSNVFGTVDAILDVEIQ 195

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 59.9 bits (145), Expect = 9e-11
 Identities = 29/184 (15%), Positives = 48/184 (26%), Gaps = 35/184 (19%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVA-RYTPTSELEYGTLL 86
           + V + C    +P+ Q   W F+N        +SY I   +   +  Y            
Sbjct: 23  DSVTLKCQGAYSPEDQSTQW-FHNESLISSQASSYFIDAATVDDSGEYR----------- 70

Query: 87  CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA 146
           C  +    +       H+         + +              V  E   I+  CH   
Sbjct: 71  CQTQLSTLSDPVQLEVHI------GWLLLQAP----------RWVFKEEDPIHLRCHSWK 114

Query: 147 NPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF 206
           N    K+ +  NG              N    +   T    G Y C  +       S   
Sbjct: 115 NTALHKVTYLQNGKGRKYFHH------NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETV 168

Query: 207 DLNI 210
            + I
Sbjct: 169 QITI 172

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 40/196 (20%)

Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ 175
           K  V +          + E   +   C    +P  +   W HN   IS+           
Sbjct: 7   KAVVFL----EPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ--------AS 54

Query: 176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG 235
           +  + + T    G Y C    S     S P  L +              +  Q+ + ++ 
Sbjct: 55  SYFIDAATVDDSGEYRCQTQLST---LSDPVQLEV----------HIGWLLLQAPRWVF- 100

Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YSIQDGSTSVA-RYTPTSELE 293
               + + + C    N      T+  N          S + I   +   +  Y       
Sbjct: 101 -KEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYF------ 153

Query: 294 YGTLLCWARNEQGSQR 309
                C       +  
Sbjct: 154 -----CRGLVGSKNVS 164

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 59.4 bits (143), Expect = 1e-10
 Identities = 26/205 (12%), Positives = 55/205 (26%), Gaps = 23/205 (11%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
             N+   +   C    +     L   +       + +     + +   + S      G+ 
Sbjct: 20  TENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMV 79

Query: 191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA 250
            C A  +     S  +      +V ++   I + V   S          E+++++CT   
Sbjct: 80  FCEAKINDESYQSIMY------IVVVVGYRIYDVVLSPSHGIE--LSVGEKLVLNCTART 131

Query: 251 NPQAQY-FTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELE--------YGTLLCWA 301
                  F W + +S                +        S L          G   C A
Sbjct: 132 ELNVGIDFNWEYPSSKH-QHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 190

Query: 302 RNEQGSQRTPCTFHVVKAGECEHPV 326
            +   +++      V      E P+
Sbjct: 191 SSGLMTKKNSTFVRVH-----EDPI 210

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 33/187 (17%), Positives = 54/187 (28%), Gaps = 13/187 (6%)

Query: 134 EGVDIYFDCHIQAN-PPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLY 190
           EG  +   C    + P      W  N   +       R ++  N  L + +V     G Y
Sbjct: 22  EGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNY 81

Query: 191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA 250
           +C   +           + +         +   P     Q +   AL  + V + C    
Sbjct: 82  SCFVSSPSITKSVFSKFIPLI--PIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALG 139

Query: 251 NPQAQYFTWAFNNSDTAPRPLTSYSIQDGST-SVARYTPTSELEYGTLLCWARNEQGSQR 309
           NP      W        P P T+     G+   +       E   G   C A N +G  +
Sbjct: 140 NPVPDI-RWRKVLE---PMPSTAEISTSGAVLKIFNIQLEDE---GIYECEAENIRGKDK 192

Query: 310 TPCTFHV 316
                +V
Sbjct: 193 HQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 24/194 (12%), Positives = 62/194 (31%), Gaps = 15/194 (7%)

Query: 11  EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQY-FTWAFNNSGTAPRPLTSYSIQDGST 69
           +P   + +  +      + +++ C    +      + W  N             +   + 
Sbjct: 8   DPFPPEERPEVR-VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66

Query: 70  S--VARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNL 127
           +  +A    + +   G   C+  +    +     F  +           P+  +   +++
Sbjct: 67  NLYIANVEASDK---GNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDV 123

Query: 128 NASVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS 186
            A     G ++  +C    NP P   + W      + + A      +   L + ++    
Sbjct: 124 YA---LMGQNVTLECFALGNPVP--DIRWRKVLEPMPSTAE--ISTSGAVLKIFNIQLED 176

Query: 187 GGLYACSAINSQGE 200
            G+Y C A N +G+
Sbjct: 177 EGIYECEAENIRGK 190

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 60.5 bits (146), Expect = 2e-10
 Identities = 43/320 (13%), Positives = 78/320 (24%), Gaps = 49/320 (15%)

Query: 24  ALRNEQVLVSCT-------VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTP 76
            L  E V + C           +P+    TW  N+S           +           P
Sbjct: 30  RLEGEPVALRCPQVPYWLWASVSPRINL-TWHKNDSARTVPGEEETRMW-AQDGALWLLP 87

Query: 77  TSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV 136
             + + GT +C  RN     +      V +  +   P       + L  +      +   
Sbjct: 88  ALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPD--- 144

Query: 137 DIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHSGGLYACS 193
                   +      K+ W  + + +       + ++      L++  V     G Y C 
Sbjct: 145 ---LSEFTRDKTDV-KIQWYKDSLLLDK--DNEKFLSVRGTTHLLVHDVALEDAGYYRCV 198

Query: 194 AINSQGEGGST---PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA 250
              +            +L I K        I  P   ++     G     ++ + C V  
Sbjct: 199 LTFAHEGQQYNITRSIELRIKKKKEETIPVIISP--LKTISASLG----SRLTIPCKVFL 252

Query: 251 NPQAQ--YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL---------- 298
                     W   N            + +G      Y+  +E      L          
Sbjct: 253 GTGTPLTTMLWWTANDTHIESAYPGGRVTEG--PRQEYSENNENYIEVPLIFDPVTREDL 310

Query: 299 -----CWARNEQGSQRTPCT 313
                C   N    Q    T
Sbjct: 311 HMDFKCVVHNTLSFQTLRTT 330

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 30/228 (13%), Positives = 50/228 (21%), Gaps = 38/228 (16%)

Query: 103 HVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-------QANPPYKKLIW 155
           H   A  C         + +L          EG  +   C           +P    L W
Sbjct: 11  HTGAARSCRFRGRHYKREFRL----------EGEPVALRCPQVPYWLWASVSPRIN-LTW 59

Query: 156 THNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKM 213
             N    +        +   +  L L    +   G Y C+  N+                
Sbjct: 60  HKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYC---------DKMS 110

Query: 214 VNLIFNSIDEPVCKQSQQRIYGALRNEQVLV----SCTVDANPQAQYFTWAFNNSDTAPR 269
           + L      +             L    VLV    S         +   W  ++      
Sbjct: 111 IELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVK-IQWYKDSLLLDKD 169

Query: 270 PLTSYSIQDGST-SVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
                S++  +   V           G   C        Q+   T  +
Sbjct: 170 NEKFLSVRGTTHLLVHDVALEDA---GYYRCVLTFAHEGQQYNITRSI 214

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 34/202 (16%), Positives = 55/202 (27%), Gaps = 27/202 (13%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII---TNQTLVLQSVTRHSG 187
            +     + F C    NP    + W  NG         G I       +LV++SV     
Sbjct: 26  AVPAANTVRFRCPAAGNPT-PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 84

Query: 188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT 247
           G Y C   N  G        +     ++++  S   P+ +        A+    V   C 
Sbjct: 85  GNYTCVVENKFGS-------IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK 137

Query: 248 VDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL--------- 298
           V ++ Q     W  +      +     +     T +  +   S      L          
Sbjct: 138 VYSDAQPH-IQWLKHVEVNGSKVGPDGTPY--VTVLKSWISESVEADVRLRLANVSERDG 194

Query: 299 ----CWARNEQGSQRTPCTFHV 316
               C A N  G         V
Sbjct: 195 GEYLCRATNFIGVAEKAFWLSV 216

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 41/198 (20%), Positives = 61/198 (30%), Gaps = 46/198 (23%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYSIQDGS---TSVAR-----YTP 76
             V   C    NP     +W  N     G           Q  S    SV       YT 
Sbjct: 31  NTVRFRCPAAGNPTPSI-SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT- 88

Query: 77  TSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV 136
                     C   N+ G+ R   T  V+     E    +P +Q  L  N  A     G 
Sbjct: 89  ----------CVVENKFGSIRQTYTLDVL-----ERSPHRPILQAGLPANQTA---VLGS 130

Query: 137 DIYFDCHIQANPPYKKLIWTHNG--------------ITISNNASAGRIITNQTLVLQSV 182
           D+ F C + ++     + W  +               +T+  +  +  +  +  L L +V
Sbjct: 131 DVEFHCKVYSDAQ-PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV 189

Query: 183 TRHSGGLYACSAINSQGE 200
           +   GG Y C A N  G 
Sbjct: 190 SERDGGEYLCRATNFIGV 207

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 59.7 bits (144), Expect = 3e-10
 Identities = 27/196 (13%), Positives = 58/196 (29%), Gaps = 30/196 (15%)

Query: 12  PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSV 71
            +   +++         ++ + C V  +PQ    T      G    P+  Y  Q G + +
Sbjct: 95  FLPNDAEELFIFLTEITEITIPCRVT-DPQLVV-TL-HEKKGDVALPV-PYDHQRGFSGI 150

Query: 72  ARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASV 131
                    E  + +C          +   +           +   S+ + +  N   +V
Sbjct: 151 --------FEDRSYICKTTIGDREVDSDAYYVYR--------LQVSSINVSV--NAVQTV 192

Query: 132 LNEGVDIYFDCHIQANPPYKKLIWTHNG-------ITISNNASAGRIITNQTLVLQSVTR 184
           + +G +I   C +  N       WT+           +++            L + S   
Sbjct: 193 VRQGENITLMCIVIGNEVVN-FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAEL 251

Query: 185 HSGGLYACSAINSQGE 200
              G Y C+   S  +
Sbjct: 252 EDSGTYTCNVTESVND 267

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 58.9 bits (142), Expect = 5e-10
 Identities = 37/296 (12%), Positives = 74/296 (25%), Gaps = 40/296 (13%)

Query: 27  NEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 86
           +   +++C+  A        W   +    P    + +     +SV   T  + L+ G   
Sbjct: 15  SSTFVLTCSGSAP-----VVWERMSQE--PPQEMAKAQDGTFSSVLTLTNLTGLDTGEYF 67

Query: 87  CWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145
           C   + +G +       ++          D     +          L E  +I   C + 
Sbjct: 68  CTHNDSRGLETDERKRLYI-------FVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT 120

Query: 146 ANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTP 205
                  L      + +       R  +                Y C       E  S  
Sbjct: 121 DPQLVVTLHEKKGDVALPVPYDHQRGFSG---------IFEDRSYICKTTIGDREVDSDA 171

Query: 206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD 265
           + +       L  +SI+  V         G    E + + C V  N     F W +   +
Sbjct: 172 YYV-----YRLQVSSINVSVNAVQTVVRQG----ENITLMCIVIGNEVVN-FEWTYPRKE 221

Query: 266 TAPRPLTSYSIQDGSTSVARY-----TPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
           +  R +   +                      + GT  C         +     ++
Sbjct: 222 S-GRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 26/188 (13%), Positives = 53/188 (28%), Gaps = 23/188 (12%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI-ITNQTLVLQSVTRHSGGL 189
           VLN        C    + P   ++W           +  +    +  L L ++T    G 
Sbjct: 11  VLNVSSTFVLTC--SGSAP---VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGE 65

Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD 249
           Y C+  +S+G        L I      + +     +   +++         ++ + C V 
Sbjct: 66  YFCTHNDSRGLETDERKRLYIF-----VPDPTVGFLPNDAEELFIFLTEITEITIPCRVT 120

Query: 250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR 309
            +PQ              P     Y  Q G + +         E  + +C          
Sbjct: 121 -DPQLVVTLHEKKGDVALP---VPYDHQRGFSGI--------FEDRSYICKTTIGDREVD 168

Query: 310 TPCTFHVV 317
           +   +   
Sbjct: 169 SDAYYVYR 176

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 38/194 (19%), Positives = 53/194 (27%), Gaps = 30/194 (15%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTS----- 78
              N  V +SC        +   W F+   T      +  I         + PT      
Sbjct: 16  IPENNPVKLSCAYSGFSSPR-VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74

Query: 79  --ELEYGTLLCWARNEQGNQRTPCTFHV-VKAGECEHPVDKPSVQIKLGRNLNASVLNEG 135
               + GT  C    E GN        + V           PS           S    G
Sbjct: 75  VTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV--------PPSKPTVN----IPSSATIG 122

Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ---------TLVLQSVTRHS 186
                 C  Q   P  +  W  +GI +  N  + R  +N           LV   ++   
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 182

Query: 187 GGLYACSAINSQGE 200
            G Y+C A N  G 
Sbjct: 183 TGEYSCEARNGYGT 196

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 51.9 bits (124), Expect = 4e-08
 Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 31/201 (15%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNG----------ITISNNASAGRIITNQTLVLQSVT 183
           E   +   C         ++ W  +             I+ +           +  +SVT
Sbjct: 18  ENNPVKLSCAYSGFSS-PRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76

Query: 184 RHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDE-PVCKQSQQRIYGALRNEQV 242
           R   G Y C      G              V LI       P          G     + 
Sbjct: 77  REDTGTYTCMVSEEGGNSYGE-------VKVKLIVLVPPSKPTVNIPSSATIG----NRA 125

Query: 243 LVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYT------PTSELEYG 295
           +++C+  D +P ++Y TW  +       P ++ +  + S  +   T      P S  + G
Sbjct: 126 VLTCSEQDGSPPSEY-TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 184

Query: 296 TLLCWARNEQGSQRTPCTFHV 316
              C ARN  G+  T     +
Sbjct: 185 EYSCEARNGYGTPMTSNAVRM 205

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 58.1 bits (140), Expect = 4e-10
 Identities = 25/199 (12%), Positives = 49/199 (24%), Gaps = 29/199 (14%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEY--GTL 85
             VL+           +  W   N+    + +  +          +     E+ Y  G+L
Sbjct: 15  NNVLLLVHNLPLALGAF-AWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73

Query: 86  L-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVL 132
           L                 +E   +        V     +  +   +  +K   ++     
Sbjct: 74  LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT---- 129

Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYAC 192
                        +N     + W  N  ++           N  L +  + R   G Y C
Sbjct: 130 ---------LTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC 180

Query: 193 SAINSQGEGGSTPFDLNIN 211
              N      S    L+I 
Sbjct: 181 EISNPVSVRRSNSIKLDII 199

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 45.0 bits (106), Expect = 9e-06
 Identities = 32/194 (16%), Positives = 50/194 (25%), Gaps = 34/194 (17%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNN----------------ASAGR--IITNQ 175
           E  ++    H           W     T  +                 A +GR  I +N 
Sbjct: 13  EDNNVLLLVHNLPLALGA-FAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG 71

Query: 176 TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG 235
           +L+ Q +T    G+Y     +                 V    +        Q       
Sbjct: 72  SLLFQMITMKDMGVYTLDMTDENYRRTQAT--------VRFHVHQPVTQPFLQVTNTTV- 122

Query: 236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG 295
               E   V+ T  +N       W FN+       LT       + S+ R  P    + G
Sbjct: 123 ---KELDSVTLTCLSNDIGANIQWLFNSQ---SLQLTERMTLSQNNSILRIDPIKREDAG 176

Query: 296 TLLCWARNEQGSQR 309
              C   N    +R
Sbjct: 177 EYQCEISNPVSVRR 190

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 57.5 bits (139), Expect = 5e-10
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 28/182 (15%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHS 186
            +++G  +  +C ++       + W  +G  + N       ++ Q     L L+SV R  
Sbjct: 13  TVSQGQPVKLNCSVEGMEE-PDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 71

Query: 187 GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSC 246
            G Y C   +      S P  L +  +          P      + +     N    +SC
Sbjct: 72  AGRYWCQVEDGGETEISQPVWLTVEGV----------PFFTVEPKDLA-VPPNAPFQLSC 120

Query: 247 TVDANPQAQYFTWAFNNSDTAPRPLTSYSIQD-GSTSVARYTPTSELEYGTLLCWARNEQ 305
                P+     W    +       +   +   G T    ++           C A N +
Sbjct: 121 EAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFS-----------CEAHNLK 169

Query: 306 GS 307
           G 
Sbjct: 170 GL 171

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 23/191 (12%), Positives = 52/191 (27%), Gaps = 27/191 (14%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNN----SGTAPRPLTSYSIQDGSTSVARYTPTSE 79
             + + V ++C+V+   +     W  +     +        S     G  S+     +  
Sbjct: 14  VSQGQPVKLNCSVEGMEEPD-IQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDA 72

Query: 80  LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIY 139
             Y    C   +    + +   +  V+          P   ++  ++L            
Sbjct: 73  GRY---WCQVEDGGETEISQPVWLTVEG--------VPFFTVEP-KDLAV---PPNAPFQ 117

Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG 199
             C     P    ++W      I               VL         +++C A N +G
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSVLNVTGVTQSTMFSCEAHNLKG 170

Query: 200 EGGSTPFDLNI 210
              S    +++
Sbjct: 171 LASSRTATVHL 181

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 9e-10
 Identities = 27/190 (14%), Positives = 49/190 (25%), Gaps = 25/190 (13%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS-GGLYAC 192
            G D+   C ++     +   W    +  S        + +  L L +VT         C
Sbjct: 172 VGDDVLLRCQVEGRGLEQ-AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTC 230

Query: 193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252
            A N  G    +         V +        V   +  +++ A+      +  +VD  P
Sbjct: 231 WAENDVGRAEVS---------VQVN-------VSFPASVQLHTAVEMHHWCIPFSVDGQP 274

Query: 253 QAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPT------SELEYGTLLCWARNEQG 306
                 W FN S             + + +             + +  G     A N  G
Sbjct: 275 APS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 333

Query: 307 SQRTPCTFHV 316
                     
Sbjct: 334 QASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 4e-09
 Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 30/182 (16%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC 87
           + VL+ C V+     Q   W       +   + S  +     ++A  T  S+L    + C
Sbjct: 174 DDVLLRCQVEGRGLEQ-AGWILTELEQSATVMKSGGLPSLGLTLANVT--SDLNRKNVTC 230

Query: 88  WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN 147
           WA N+ G        +V      +                                +   
Sbjct: 231 WAENDVGRAEVSVQVNVSFPASVQLHTAVEM-----------------HHWCIPFSVDGQ 273

Query: 148 PPYKKLIWTHNGITISNNA---------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQ 198
           P    L W  NG  ++  +         +A   + +  L L   T  + G Y   A N  
Sbjct: 274 PA-PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332

Query: 199 GE 200
           G+
Sbjct: 333 GQ 334

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 36/191 (18%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASA-----------GRIITNQTLVL 179
               G+     C +Q      ++ W  +G  +    S               I    L +
Sbjct: 13  TGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRI 72

Query: 180 QSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN 239
            S+     G Y C          S P  + +       F  ++EP   + +        N
Sbjct: 73  TSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE--GLPYF--LEEP---EDRT----VAAN 121

Query: 240 EQVLVSCTVDANPQAQYFTWAFNNS--DTAPRPLTSYSIQ-DGSTSVARYTPTSELEYGT 296
               +SC     P+     W  +     TAP      S+   G    + ++         
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFS--------- 172

Query: 297 LLCWARNEQGS 307
             C A N +G 
Sbjct: 173 --CEAHNAKGV 181

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 24/195 (12%), Positives = 47/195 (24%), Gaps = 25/195 (12%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE-- 81
             R     + C +    +     W  +         T   +  G      +   S+L   
Sbjct: 14  GARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRIT 73

Query: 82  ------YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEG 135
                  G   C               +V   G        P    +   +   +     
Sbjct: 74  SLQLSDTGQYQCLVFLGHQ-TFVSQPGYVGLEG-------LPYFLEEP-EDRTVA---AN 121

Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI 195
                 C  Q  P    L+W  + + ++     G         L     +    ++C A 
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP-----QRSLHVPGLNKTSSFSCEAH 176

Query: 196 NSQGEGGSTPFDLNI 210
           N++G   S    + +
Sbjct: 177 NAKGVTTSRTATITV 191

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRH 185
           V  EG  + + C I+      ++ W      + N+    +           L ++ +T+ 
Sbjct: 12  VGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS---EKYEITYEDGVAILYVKDITKL 68

Query: 186 SGGLYACSAINSQGE 200
             G Y C  +N  GE
Sbjct: 69  DDGTYRCKVVNDYGE 83

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT-- 173
            P++   L  N      + G  I   C    NPP  +++W  +  T+  +     I+   
Sbjct: 10  APTITGNL-ENQTT---SIGESIEVSCTASGNPP-PQIMWFKDNETLVED---SGIVLKD 61

Query: 174 -NQTLVLQSVTRHSGGLYACSAINSQGE 200
            N+ L ++ V +   GLY C A +  G 
Sbjct: 62  GNRNLTIRRVRKEDEGLYTCQACSVLGC 89

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 56.9 bits (137), Expect = 3e-09
 Identities = 28/200 (14%), Positives = 50/200 (25%), Gaps = 16/200 (8%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
           V   G  +   C      P    +W  +G  +  +     ++  Q L + + +    G Y
Sbjct: 19  VFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSER--VLVGPQRLQVLNASHEDSGAY 76

Query: 191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQS-------------QQRIYGAL 237
           +C    +Q         +          +  DE                    +++    
Sbjct: 77  SCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP 136

Query: 238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTL 297
               V   C    NP     +W  N  +                           + G  
Sbjct: 137 AANTVRFRCPAAGNPTPSI-SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNY 195

Query: 298 LCWARNEQGSQRTPCTFHVV 317
            C   N+ GS R   T  V+
Sbjct: 196 TCVVENKFGSIRQTYTLDVL 215

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 55.8 bits (134), Expect = 7e-09
 Identities = 41/191 (21%), Positives = 60/191 (31%), Gaps = 31/191 (16%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 84
             V   C    NP     +W  N     G           Q  S  +    P+     G 
Sbjct: 139 NTVRFRCPAAGNPTPSI-SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR---GN 194

Query: 85  LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
             C   N+ G+ R   T  V+     E    +P +Q  L  N  A     G D+ F C +
Sbjct: 195 YTCVVENKFGSIRQTYTLDVL-----ERSPHRPILQAGLPANQTAV---LGSDVEFHCKV 246

Query: 145 QANPPYKKLIWTH----NGITISNNASAGRIIT-----------NQTLVLQSVTRHSGGL 189
            ++     + W      NG  +  + +    +             + L L +VT    G 
Sbjct: 247 YSDAQ-PHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGE 305

Query: 190 YACSAINSQGE 200
           Y C A NS G 
Sbjct: 306 YTCLAGNSIGF 316

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 36/212 (16%), Positives = 58/212 (27%), Gaps = 37/212 (17%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTS----- 78
              NE + ++CT       +   W F    T      +  I         ++ +      
Sbjct: 13  VPENESIKLTCTYSGFSSPR-VEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSS 71

Query: 79  --ELEYGTLLCWARNEQGNQRTPCTFHV-VKAGECEHPVDKPSVQIKLGRNLNASVLNEG 135
               + G   C    E G      + H+ V           PS           S +  G
Sbjct: 72  VTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV--------PPSKPTI----SVPSSVTIG 119

Query: 136 VDIYFDCHIQANPPYKKLIWTHNGITISN----------NASAGRIITNQTLVLQSVTRH 185
                 C      P  +  W  +GI++            N+S      +  L+   VT  
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179

Query: 186 SGGLYACSAINSQGEGGSTP------FDLNIN 211
             G Y C A N  G    +        +LN+ 
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMDAVELNVG 211

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 32/220 (14%), Positives = 59/220 (26%), Gaps = 36/220 (16%)

Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR----- 170
           K SV        +  V  E   I   C         ++ W     + +            
Sbjct: 1   KGSVYT---AQSDVQVP-ENESIKLTCTYSGFSS-PRVEWKFVQGSTTALVCYNSQITAP 55

Query: 171 -----IITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDE-P 224
                  ++  +   SVTR   G Y C      G+             ++L        P
Sbjct: 56  YADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGE-------VSIHLTVLVPPSKP 108

Query: 225 VCKQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSV 283
                     G     + +++C+  D +P ++Y +W  +                 S+  
Sbjct: 109 TISVPSSVTIG----NRAVLTCSEHDGSPPSEY-SWFKDGISMLTADAKKTRAFMNSSFT 163

Query: 284 ARY-------TPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
                      P +  + G   C A+N  G+       H+
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI-ITNQTLVLQSVTRHSGGL 189
           +++ G  +   C ++ +     + W  +G+ ++ +    R  IT + + +Q       GL
Sbjct: 14  LVHPGDLLQLRCRLRDDVQ--SINWLRDGVQLAES---NRTRITGEEVEVQDSVPADSGL 68

Query: 190 YACSAINSQGEGGSTPFDLNI 210
           YAC   +  G   +T F +N+
Sbjct: 69  YACVTSSPSGS-DTTYFSVNV 88

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 26/195 (13%), Positives = 53/195 (27%), Gaps = 29/195 (14%)

Query: 131 VLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGL 189
           + +  + +   C++ ++        WT NG+ ++      +  +N    +        G 
Sbjct: 14  IRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT---RKNASNMEYRINKPRAEDSGE 70

Query: 190 YACSAINSQGEGGSTPFDLNINKMVNLIFN---SIDEPVCKQSQQRIYGALRNEQVLVSC 246
           Y C   +                   +       I     K+S+ +  G    +  ++ C
Sbjct: 71  YHCVY-HFVSA---------PKANATIEVKAAPDITGH--KRSENKNEG----QDAMMYC 114

Query: 247 TVDANPQAQYFTWAFNNSDTAPRPLTSYS----IQDGSTSVARYTPTSELE-YGTLLCWA 301
                P  + + W    +        S      I   + +          E  G   C A
Sbjct: 115 KSVGYPHPE-WMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNA 173

Query: 302 RNEQGSQRTPCTFHV 316
            N  GS        V
Sbjct: 174 TNSIGSASVSTVLRV 188

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 21/199 (10%), Positives = 46/199 (23%), Gaps = 43/199 (21%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL- 86
           E + +   V    +     W+ N        +             R       E   L  
Sbjct: 18  EGIQLYSFVTYYVEDLKVNWSHNG-----SAIRYSD---------RVKTGVTGEQIWLQI 63

Query: 87  ------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRN-------- 126
                           + +   +           E      +        +N        
Sbjct: 64  NEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGL 123

Query: 127 LNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQS 181
            +   + EG  +   C++  +PP  ++ W  N   ++   +    +  +        +  
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPP-PEVSWLKNEKALAQ--TDHCNLKFEAGRTAYFTING 180

Query: 182 VTRHSGGLYACSAINSQGE 200
           V+    G Y     N  G 
Sbjct: 181 VSTADSGKYGLVVKNKYGS 199

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 18/201 (8%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRH 185
           + +    I     +       K+ W+HNG  I  +    R+ T        L +   T +
Sbjct: 13  IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS---DRVKTGVTGEQIWLQINEPTPN 69

Query: 186 SGGLYACSAINSQGEGGST---------PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGA 236
             G Y     + +     T                ++        +          +   
Sbjct: 70  DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTI 129

Query: 237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 296
              + + ++C V  +P  +  +W  N    A     +   + G T+       S  + G 
Sbjct: 130 QEGKALNLTCNVWGDPPPE-VSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGK 188

Query: 297 LLCWARNEQGSQRTPCTFHVV 317
                +N+ GS+ +  T  V 
Sbjct: 189 YGLVVKNKYGSETSDFTVSVF 209

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 54.9 bits (132), Expect = 6e-09
 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 24/198 (12%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGSTSVARYTPTSELE 81
             +NE   ++C V+  P+     W  +     T  +       +DG+    R     + +
Sbjct: 21  VKKNEPATLNCKVEGKPEPTI-EWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79

Query: 82  Y-GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF 140
             G   C A+N  G   +      +        V +   +++     +  V  +G     
Sbjct: 80  DGGEYWCVAKNRVGQAVSRHASLQIA-------VLRDDFRVEP---KDTRVA-KGETALL 128

Query: 141 DCH-IQANPPYKKLIWTHNGITISNNASAG-------RIITNQTLVLQSVTRHSGGLYAC 192
           +C   +  P    LIW  +G+ + +  +         RI+    L++ +V     G Y C
Sbjct: 129 ECGPPKGIPEPT-LIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187

Query: 193 SAINSQGEGGSTPFDLNI 210
            A N  G   S+   L +
Sbjct: 188 IAQNLVGTRESSYAKLIV 205

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGG 188
           EG+ + F C +  NP P  K+ W  +G  IS  +    I  +     +L   + T    G
Sbjct: 22  EGMPVTFTCRVAGNPKP--KIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDG 79

Query: 189 LYACSAINSQGE 200
            Y   A N QG 
Sbjct: 80  NYTIMAANPQGR 91

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
            L  G  +   C    +P      W  N + +++        T +  ++  V     G Y
Sbjct: 14  KLMPGSTLVLQCVAVGSPI-PHYQWFKNELPLTHE-------TKKLYMVPYVDLEHQGTY 65

Query: 191 ACSAINSQGEGGSTPFDLNINKMVNL 216
            C   N +    S   ++ I+++ NL
Sbjct: 66  WCHVYNDRDSQDSKKVEIIIDELNNL 91

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI-ITNQTLVLQSVTRHSGGL 189
           +++ G  +   C ++ +     + W  +G+ +  +    R  IT + + ++       GL
Sbjct: 20  LVHPGDLLQLRCRLRDDVQ--SINWLRDGVQLVES---NRTRITGEEVEVRDSIPADSGL 74

Query: 190 YACSAINSQGEGGSTPFDLNI 210
           YAC   +  G   +T F +N+
Sbjct: 75  YACVTSSPSGS-DTTYFSVNV 94

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 128 NASVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSV 182
           +  VL EG  +  +C I A P P  KL W  N   +  N     +  +     TL+++ V
Sbjct: 24  SKKVL-EGDSVKLECQISAIPPP--KLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDV 80

Query: 183 TRHSGGLYACSAINSQGE 200
            +   G Y  SA+N  G 
Sbjct: 81  NKKDAGWYTVSAVNEAGV 98

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 33/197 (16%), Positives = 56/197 (28%), Gaps = 27/197 (13%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNN---SGTAPRPLTSYSI-QDGSTSVARYTPTSE 79
             + E   ++C  +  P      W             P +   +   GS    R     +
Sbjct: 21  VSKGEPATLNCKAEGRPTPTI-EWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK 79

Query: 80  LEY--GTLLCWARNEQGNQRTPCTFHVVKAGE---CEHPVDKPSVQIKLGRNLNASVLNE 134
                G  +C ARN  G   +      V        ++P D               ++  
Sbjct: 80  SRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV--------------MVAV 125

Query: 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT-NQTLVLQSVTRHSGGLYACS 193
           G     +C      P   + W  +G  + +     RI      L++    +   G Y C 
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKD--ERITIRGGKLMITYTRKSDAGKYVCV 183

Query: 194 AINSQGEGGSTPFDLNI 210
             N  GE  S   +L +
Sbjct: 184 GTNMVGERESEVAELTV 200

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 29/194 (14%), Positives = 62/194 (31%), Gaps = 34/194 (17%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR----IITNQTLVLQSVTRHS 186
           ++++G     +C  +  P    + W   G  +  +    R    ++ + +L    +    
Sbjct: 20  IVSKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78

Query: 187 G-----GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQ 241
                 G+Y C A N  GE  S    L +  +             +Q+   +      E 
Sbjct: 79  KSRPDEGVYVCVARNYLGEAVSHDASLEVAIL---------RDDFRQNPSDVM-VAVGEP 128

Query: 242 VLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTS----YSIQDGSTSVARYTPTSELEYGT 296
            ++ C     +P+    +W  +       PL       +I+ G   +     +     G 
Sbjct: 129 AVMECQPPRGHPEPTI-SWKKDG-----SPLDDKDERITIRGGKLMITYTRKSDA---GK 179

Query: 297 LLCWARNEQGSQRT 310
            +C   N  G + +
Sbjct: 180 YVCVGTNMVGERES 193

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
            +         C    +P    ++W  +G+ +S   S  + + N  L ++       G Y
Sbjct: 19  TVAVDGTFVLSCVATGSPVPT-ILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRY 77

Query: 191 ACSAINSQGE 200
            C A    GE
Sbjct: 78  TCIASTPSGE 87

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ---TLVLQSVTRHSGGL 189
           EG D+     +Q  P P   + W  N   +  +              L + +  R   G 
Sbjct: 19  EGQDVIMSIRVQGEPKP--VVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF 76

Query: 190 YACSAINSQGE 200
           Y C A+N  G 
Sbjct: 77  YTCKAVNEYGA 87

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGG 188
           +G D +F   +   P P  +  W  NG+ I  +         +     LV++ VT     
Sbjct: 19  QGSDAHFRVRVVGKPDP--ECEWYKNGVKIERS-DRIYWYWPEDNVCELVIRDVTGEDSA 75

Query: 189 LYACSAINSQGE 200
                AIN  GE
Sbjct: 76  SIMVKAINIAGE 87

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 52.3 bits (125), Expect = 4e-08
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 29/173 (16%)

Query: 138 IYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINS 197
           ++ D  I    P++     H            R      LV+ +      G Y C     
Sbjct: 43  MHHDV-IFIEWPFRGFFDIH------------RSANTFFLVVTAANISHDGNYLCRMKLG 89

Query: 198 QGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF 257
           + E  +    L++ K + L  +S                     + V+CTV+A P     
Sbjct: 90  ETE-VTKQEHLSVVKPLTLSVHSERSQF-----------PDFSVLTVTCTVNAFPHPHV- 136

Query: 258 TWAFNNSDTAPRPLTSYSIQ---DGSTSVARYTPTSELEYGTLLCWARNEQGS 307
            W             +  +    DGS SVA      +  +  + C  +N++  
Sbjct: 137 QWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEE 189

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 23/181 (12%)

Query: 29  QVLVSCTVDANPQAQYFTWAFNNSGTA---PRPLTSYSIQDGSTSVARYTPTSELEYGTL 85
           ++ VS       + Q      ++       P        +  +T     T  +    G  
Sbjct: 23  EIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNY 82

Query: 86  LCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ 145
           LC  +  +          VVK           ++ +        S   +   +   C + 
Sbjct: 83  LCRMKLGETEVTKQEHLSVVK---------PLTLSVHS----ERSQFPDFSVLTVTCTVN 129

Query: 146 ANPPYKKLIWTH-NGITISNNASAGRII-----TNQTLVLQSVTRHSGGLYACSAINSQG 199
           A P    + W    G+  +  A+ G ++     +    V  S+ +       C   N + 
Sbjct: 130 AFPH-PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188

Query: 200 E 200
           E
Sbjct: 189 E 189

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRI-ITNQ----TLVLQSVTRHSG 187
            G +  F  ++Q+ P    ++ W HNG+ +  +    +I  TN     TL +        
Sbjct: 22  CGQNTRFILNVQSKPTA--EVKWYHNGVELQES---SKIHYTNTSGVLTLEILDCHTDDS 76

Query: 188 GLYACSAINSQGE 200
           G Y     N +GE
Sbjct: 77  GTYRAVCTNYKGE 89

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 50.3 bits (120), Expect = 5e-08
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ--------TLVLQSVTR 184
             G      C I++ PP  ++ W+     + +  S    +           TL + ++ R
Sbjct: 26  LHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR 85

Query: 185 -HSGGLYACSAINSQGE 200
                +Y C+A NS G 
Sbjct: 86  ADFQTIYNCTAWNSFGS 102

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 229 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQ-----DGSTSV 283
           S  +   AL  E+  + C + + P      W++  +         Y+++     +G  S 
Sbjct: 18  SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 77

Query: 284 ARYTPTSELEYGTL-LCWARNEQGSQRTPCTFHV 316
              +     ++ T+  C A N  GS         
Sbjct: 78  LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 17  SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQ-----DGSTSV 71
           S  +   AL  E+  + C + + P      W++  +         Y+++     +G  S 
Sbjct: 18  SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 77

Query: 72  ARYTPTSELEYGTL-LCWARNEQGNQRTPCTFHV 104
              +     ++ T+  C A N  G+         
Sbjct: 78  LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 53.3 bits (127), Expect = 5e-08
 Identities = 38/331 (11%), Positives = 85/331 (25%), Gaps = 85/331 (25%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE------ 81
           + V ++CT       Q F W  +N         S+  +  S    R      L       
Sbjct: 10  DTVELTCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 82  ----------YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASV 131
                       T +C   +              +  E +  V   +         + + 
Sbjct: 69  LIIKNLKIEDSDTYICEVED--------------QKEEVQLLVFGLTAN-------SDTH 107

Query: 132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYA 191
           L +G  +              +                     +TL +  +     G + 
Sbjct: 108 LLQGQSLTLTLESPPGSS-PSVQCRSPRGKNIQG--------GKTLSVSQLELQDSGTWT 158

Query: 192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN 251
           C+ + +Q +         +   ++++  +  +         I      EQV  S  +   
Sbjct: 159 CTVLQNQKK---------VEFKIDIVVLAFQKA------SSIVYKKEGEQVEFSFPLAFT 203

Query: 252 PQAQYFT---WAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELE--------------- 293
            +    +   W      ++ +   ++ +++   SV R T   +L+               
Sbjct: 204 VEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL 263

Query: 294 -----YGTLLCWARNEQGSQRTPCTFHVVKA 319
                 G L      + G         V++A
Sbjct: 264 PQYAGSGNLTLALEAKTGKLHQEVNLVVMRA 294

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGG 188
           EG     D  +   P P   + W  NG T+ ++    ++I ++    +L+ + V     G
Sbjct: 19  EGRFCRMDFKVSGLPAP--DVSWYLNGRTVQSDDLH-KMIVSEKGLHSLIFEVVRASDAG 75

Query: 189 LYACSAINSQGE 200
            YAC A N  GE
Sbjct: 76  AYACVAKNRAGE 87

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 25/189 (13%), Positives = 53/189 (28%), Gaps = 42/189 (22%)

Query: 135 GVDIYFDCH-IQANPPYKKLIWTH-----------NGITISNNASAGRIITNQTLVLQSV 182
           G DI  D    Q +     + W                         ++  N TL ++ +
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 183 TRHSGGLYACSAINSQGEGGSTP-FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQ 241
                 +Y  S  +++G+      FDL I + V        +P    +            
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-------SKPKISWT---------CIN 117

Query: 242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301
             ++C V      +      +      + L             ++T +   ++    C A
Sbjct: 118 TTLTCEVMNGTDPEL-NLYQDG-----KHLKL----SQRVITHKWTTSLSAKF---KCTA 164

Query: 302 RNEQGSQRT 310
            N+   + +
Sbjct: 165 GNKVSKESS 173

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 18/194 (9%), Positives = 45/194 (23%), Gaps = 38/194 (19%)

Query: 17  SQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT 75
           +    +GAL  + + +       +       W   +                     +  
Sbjct: 5   NALETWGAL-GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF 63

Query: 76  PTSELE--------YGTLLCWARNEQGNQRTPCTFHV-VKAGECEHPVDKPSVQIKLGRN 126
               L+                 + +G       F + ++       V KP +       
Sbjct: 64  KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQE-----RVSKPKISW----- 113

Query: 127 LNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHS 186
                    ++    C +       +L    +G  +           +Q ++    T   
Sbjct: 114 -------TCINTTLTCEVMNGTDP-ELNLYQDGKHLK---------LSQRVITHKWTTSL 156

Query: 187 GGLYACSAINSQGE 200
              + C+A N   +
Sbjct: 157 SAKFKCTAGNKVSK 170

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ--TLVLQSVTRHSGGLY 190
           EG    F C     P P   + W   G  +S +A      T    T  + SV     G Y
Sbjct: 28  EGESARFSCDTDGEPVP--TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNY 85

Query: 191 ACSAINSQGEGGSTPFDLNINK 212
           +    NS+G+     F L I K
Sbjct: 86  SVVVENSEGK-QEAEFTLTIQK 106

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 25/209 (11%), Positives = 58/209 (27%), Gaps = 31/209 (14%)

Query: 119 VQIKLGRNL-NASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTL 177
           +Q   G +L       E   +   C    +   K + W  +G  I            +  
Sbjct: 1   MQSIKGNHLVKVYDYQEDGSVLLTC----DAEAKNITWFKDGKMIGFLTE-----DKKKW 51

Query: 178 VLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSID--------------- 222
            L S  +   G+Y C    ++ +     + +             D               
Sbjct: 52  NLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGN 111

Query: 223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSD-TAPRPLTSYSIQDGST 281
           E +   +Q     ++    V+++C      +     W  N+ +        +    +   
Sbjct: 112 EEMGGITQTPYKVSISGTTVILTCPQYPGSE---ILWQHNDKNIGGDEDDKNIGSDEDHL 168

Query: 282 SVARYTPTSELEYGTLLCWARNEQGSQRT 310
           S+  ++   +   G  +C+ R  +     
Sbjct: 169 SLKEFSELEQS--GYYVCYPRGSKPEDAN 195

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 15/191 (7%)

Query: 27  NEQVLVSCTVDANPQAQYFTWAFNNS--GTAPRPLTSYSIQDGSTSVA-RYT-PTSELEY 82
           +  VL++C  +A       TW  +    G        +++   +      Y    S+ + 
Sbjct: 18  DGSVLLTCDAEAKN----ITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKS 73

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNAS--VLNEGVDIYF 140
             L  + R    +           A + +   D      ++G        V   G  +  
Sbjct: 74  KPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVIL 133

Query: 141 DCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-TLVLQSVTRHS-GGLYACSAINSQ 198
            C     P  + ++W HN   I  +     I +++  L L+  +     G Y C    S+
Sbjct: 134 TC--PQYPGSE-ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 190

Query: 199 GEGGSTPFDLN 209
            E  +    L 
Sbjct: 191 PEDANFYLYLR 201

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 131 VLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHS 186
            + EG D    C ++  P P  ++ W  NG  I       R         L +Q      
Sbjct: 22  AVIEGQDFVLQCSVRGTPVP--RITWLLNGQPIQY----ARSTCEAGVAELHIQDALPED 75

Query: 187 GGLYACSAINSQGE 200
            G Y C A N+ G+
Sbjct: 76  HGTYTCLAENALGQ 89

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 15/91 (16%)

Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRII-- 172
           KP +            +  G     +      P P     WT      +       ++  
Sbjct: 2   KPKILTAS----RKIKIKAGFTHNLEVDFIGAPDP--TATWTVGDSGAALA---PELLVD 52

Query: 173 ---TNQTLVLQSVTRHSGGLYACSAINSQGE 200
              +  ++   S  R   G Y     N  GE
Sbjct: 53  AKSSTTSIFFPSAKRADSGNYKLKVKNELGE 83

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDC 142
           G+      N    +        V     E P  KP     +  ++      EG    FDC
Sbjct: 11  GSSPTSPINANKVENEDAFLEEVAE---EKPHVKPYFTKTI-LDMEVV---EGSAARFDC 63

Query: 143 HIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGGLYACSAINSQ 198
            ++  P  + ++W  +   +  +    +I  ++    +L +  V       Y C A+NS 
Sbjct: 64  KVEGYPDPE-VMWFKDDNPVKESRHF-QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL 121

Query: 199 GE 200
           GE
Sbjct: 122 GE 123

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHSG 187
            +     + F C    NP    + W  NG         G       + +L+++SV     
Sbjct: 19  AVPAANTVKFRCPAGGNPM-PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 77

Query: 188 GLYACSAINSQGE 200
           G Y C   N  G 
Sbjct: 78  GNYTCVVENEYGS 90

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNN-------ASAGRIITNQTLVLQSVTRH 185
                     ++ NP P   L W +NG  ++ +               +  L L + T  
Sbjct: 15  SDHHWCIPFTVKGNPKP--ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM 72

Query: 186 SGGLYACSAINSQGE 200
           + G Y   A N  G+
Sbjct: 73  NNGDYTLIAKNEYGK 87

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTRHSGGL 189
           EG     DC +   P P   L W  +G  +  +++   ++      +L+++ VT    G+
Sbjct: 23  EGKLCRMDCKVSGLPTP--DLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGI 80

Query: 190 YACSAINSQGE 200
           Y C A N  G+
Sbjct: 81  YTCIATNRAGQ 91

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 11/73 (15%)

Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSG 187
                 F       P P    IWT +G  I+     G+   ++      L +        
Sbjct: 20  SDSVAKFAVKATGEPRP--TAIWTKDGKAITQG---GKYKLSEDKGGFFLEIHKTDTSDS 74

Query: 188 GLYACSAINSQGE 200
           GLY C+  NS G 
Sbjct: 75  GLYTCTVKNSAGS 87

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
            +  G  +   C + A P   ++ W  +G+ +           +  L+L  +     G Y
Sbjct: 21  AVAPGGTVTLTCEVPAQPS-PQIHWMKDGVPLPLP-------PSPVLILPEIGPQDQGTY 72

Query: 191 ACSAINSQGE 200
           +C A +S   
Sbjct: 73  SCVATHSSHG 82

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
            L         C    +P    + W   G T         I    TL ++++     G Y
Sbjct: 19  TLAVDGTALLKCKATGDPL-PVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTY 77

Query: 191 ACSAINSQGE 200
            C A +S GE
Sbjct: 78  TCVATSSSGE 87

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 24/203 (11%), Positives = 48/203 (23%), Gaps = 39/203 (19%)

Query: 24  ALRNEQVLVSCTVDANPQAQY---FTWAFNNSGTAPRPLTSYSIQDGSTS---------- 70
             + E   + C    +P+ Q      W  + S                            
Sbjct: 12  KAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGR 71

Query: 71  VARYTPTSELEYGTLL-------------CWARNEQGNQRTPCTFHVVKAGECEHPVDKP 117
           V   +   +    ++              C  +   G         V+          KP
Sbjct: 72  VHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL---------VKP 122

Query: 118 SVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTL 177
           S      R         G D    C  +      +  W     + +        +T+  +
Sbjct: 123 SGT----RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI 178

Query: 178 VLQSVTRHSGGLYACSAINSQGE 200
            +++ +    G Y+C+  N  G 
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGS 201

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 19/145 (13%), Positives = 35/145 (24%), Gaps = 21/145 (14%)

Query: 174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSI-DEPVCKQSQQR 232
           + ++ + ++     G Y C    + G                L          C      
Sbjct: 83  DASINVTNLQLSDIGTYQCKVKKAPGVANKK---------FLLTVLVKPSGTRCFVDGSE 133

Query: 233 IYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSE 291
             G        + C     +   Q+  W   +            +     SV   +    
Sbjct: 134 EIG----NDFKLKCEPKEGSLPLQF-EWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYS 188

Query: 292 LEYGTLLCWARNEQGSQRTPCTFHV 316
              GT  C  +N  GS +  C   +
Sbjct: 189 ---GTYSCTVQNRVGSDQ--CMLRL 208

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 25/188 (13%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNN---ASAGRIIT--------NQTLVLQSV 182
            G  +  +C        + L      +    N     + R                + SV
Sbjct: 16  VGSSVSLECDFDRRECTE-LEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV 74

Query: 183 TRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQV 242
                G Y C  I                K + +   +    +      RI       +V
Sbjct: 75  QVRDSGQYRCLVICGAAWD---------YKYLTVKVKASYMRI----DTRILEVPGTGEV 121

Query: 243 LVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR 302
            ++C     P A+  +W    + + P   +     +G   V               C   
Sbjct: 122 QLTCQARGYPLAE-VSWQ---NVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFW 177

Query: 303 NEQGSQRT 310
           N    + T
Sbjct: 178 NAHMKELT 185

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 27/188 (14%), Positives = 51/188 (27%), Gaps = 40/188 (21%)

Query: 134 EGVDIYFDCH-IQANPPYKKLIWTHNGITI-------SNNASAGR--IITNQTLVLQSVT 183
            G  I  +    Q      ++ W      +            +G   I+ N  L ++++T
Sbjct: 10  LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69

Query: 184 RHSGGLYACSAINSQGEGGSTP-FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQV 242
           R   G Y  +  ++ G        DL I +MV+       +P+                 
Sbjct: 70  RDDSGTYNVTVYSTNGTRILNKALDLRILEMVS-------KPMIYWE---------CSNA 113

Query: 243 LVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR 302
            ++C V      +                 + S Q  +   A +            C A 
Sbjct: 114 TLTCEVLEGTDVEL-KLYQGKEHLRSLRQKTMSYQW-TNLRAPFK-----------CKAV 160

Query: 303 NEQGSQRT 310
           N    +  
Sbjct: 161 NRVSQESE 168

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 27/200 (13%), Positives = 58/200 (29%), Gaps = 38/200 (19%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNG---------------ITISNNASAGR--IITNQT 176
            G  +       A      + W  N                I ++N     R     + +
Sbjct: 12  LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71

Query: 177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGA 236
           L L ++     G Y    I+++     + + L I + +  I  +    + +         
Sbjct: 72  LQLSNLKMEDTGSYRAQ-ISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNM------- 123

Query: 237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 296
               ++ ++C+V+       F W    +  + +P  + S     +S   YT         
Sbjct: 124 --TCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYT--------- 172

Query: 297 LLCWARNEQGSQRTPCTFHV 316
             C A N   +     +   
Sbjct: 173 --CIAENAVSNLSFSVSAQK 190

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 26/187 (13%), Positives = 49/187 (26%), Gaps = 28/187 (14%)

Query: 83  GTLLCWARNEQGNQRTPCTFHVVKAGECEHPV---DKPSVQIKLGRNLNASVLNEGVDIY 139
           G  LC A ++  + +      V+K              +    LG               
Sbjct: 198 GQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPE-------VANVAK 250

Query: 140 FDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-------TLVLQSVTRHSGGLYAC 192
           F C   +      ++ T      +     GRI+ N        ++V+  + +   G Y C
Sbjct: 251 FLCRQSSGENCDVVVNTLGKRAPAFE---GRILLNPQDKDGSFSVVITGLRKEDAGRYLC 307

Query: 193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP 252
            A +       +P               ++E         +   +    V V C  +   
Sbjct: 308 GAHSDGQLQEGSPIQAWQLF--------VNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE 359

Query: 253 QAQYFTW 259
                 W
Sbjct: 360 SKSIKYW 366

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 19/117 (16%)

Query: 89  ARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASV-LNEGVDIYFDCHIQAN 147
           +    G    P T             + P   I+L R+L  +     G  +      Q  
Sbjct: 2   SSGSSGTLAQPVT--------IREIAEPPK--IRLPRHLRQTYIRKVGEQLNLVVPFQGK 51

Query: 148 PPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGGLYACSAINSQGE 200
           P   +++WT  G  +  +      +          ++   R   G Y  S      +
Sbjct: 52  PR-PQVVWTKGGAPLDTS---RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMK 104

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 9/72 (12%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI-ITNQ----TLVLQSVTRHSGG 188
            G  +     +    P     W      I  +     + + N      L + +  +   G
Sbjct: 21  AGESVELFGKVTGTQP-ITCTWMKFRKQIQES---EHMKVENSENGSKLTILAARQEHCG 76

Query: 189 LYACSAINSQGE 200
            Y     N  G 
Sbjct: 77  CYTLLVENKLGS 88

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNA------SAGRIITNQTLVLQSVTRHSG 187
             ++   +  ++ NPP   L W HNG  +  +            I+   L+    T ++ 
Sbjct: 19  LRLEHCIEFVVRGNPP-PTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNN 77

Query: 188 GLYACSAINSQGE 200
           G Y   A N  G 
Sbjct: 78  GNYTLIAKNPLGT 90

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 14/90 (15%)

Query: 134 EGVDIYFDCHIQANPPYKK--LIWTHNGITISNNASAGRIITNQ-----------TLVLQ 180
            G DI F   ++A    +K  + W         + +   +   +            + + 
Sbjct: 21  VGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQII 80

Query: 181 SVTRHSGGLYACSAINSQGEGGSTPFDLNI 210
               +  G Y C          S  FDL +
Sbjct: 81  KAKDNFAGNYRCEVTYKDKF-DSCSFDLEV 109

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 21/189 (11%), Positives = 44/189 (23%), Gaps = 47/189 (24%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEY----- 82
           + V ++CT       Q F W  +N         S+  +  S    R      L       
Sbjct: 11  DTVELTCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 83  -----------GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASV 131
                       T +C   +++   +                       +  G++L    
Sbjct: 70  LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN----------SDTHLLQGQSLT--- 116

Query: 132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYA 191
                                +                 I   +TL +  +     G + 
Sbjct: 117 --------LTLESPPGSS-PSVQCRSPRGKN--------IQGGKTLSVSQLELQDSGTWT 159

Query: 192 CSAINSQGE 200
           C+ + +Q +
Sbjct: 160 CTVLQNQKK 168

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 11/88 (12%)

Query: 135 GVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----------TLVLQSVT 183
           G D+ F C   ++        W  +   + +                      L L++V 
Sbjct: 25  GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84

Query: 184 RHSGGLYACSAINSQGEGGSTPFDLNIN 211
             S G Y C   N  G   S    L IN
Sbjct: 85  FTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ-----TLVLQSVTRHSG 187
            EG    F+C +         +WT  G T+ ++    R    +      LV++       
Sbjct: 21  LEGESCSFECVLSHESASDPAMWTVGGKTVGSS---SRFQATRQGRKYILVVREAAPSDA 77

Query: 188 GLYACSAINSQGE 200
           G    S      +
Sbjct: 78  GEVVFSVRGLTSK 90

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 35/186 (18%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEY-GTLL 86
             V ++C +D++       W  N      +      +QD S          E+E  G  +
Sbjct: 15  TSVELTCPLDSDEN---LKWEKNGQELPQKHDKHLVLQDFS----------EVEDSGYYV 61

Query: 87  CWARNEQGNQRTPCTFHVVKAGECEHPVDK-----------PSVQIKLGRN-LNASVLNE 134
           C+      N        V  A + +    K              Q    +N +       
Sbjct: 62  CYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRG 121

Query: 135 GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSA 194
              +   C +        + W  +G  IS   +     T  T  L +  +   G Y C  
Sbjct: 122 DGSVLLTCGLTDKT----IKWLKDGSIISPLNA-----TKNTWNLGNNAKDPRGTYQCQG 172

Query: 195 INSQGE 200
                 
Sbjct: 173 AKETSN 178

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 110 CEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG 169
                 +  ++ +  + +      EG  + F C    +PP   ++W      + +  S G
Sbjct: 378 NYFTCRRARIRDRKAQQVFVD---EGHTVQFVCRADGDPP-PAILWLSPRKHLVSAKSNG 433

Query: 170 R--IITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
           R  +  + TL ++       G Y C A N+ G   S P  L++ 
Sbjct: 434 RLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHVR 476

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 113 PVDKPS--VQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR 170
           P+  PS  + + +    + SV   G D+ F C  ++  P   L+WT           +  
Sbjct: 2   PLAAPSKPIMVTVEEQRSQSV-RPGADVTFICTAKSKSPAYTLVWTRLHNGKL---PSRA 57

Query: 171 IITNQTLVLQSVTRHSGGLYACSAINSQGE 200
           +  N  L +++V     G Y C+  N    
Sbjct: 58  MDFNGILTIRNVQPSDAGTYVCTGSNMFAM 87

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 38/221 (17%), Positives = 62/221 (28%), Gaps = 35/221 (15%)

Query: 24  ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG 83
            +R + V++ CT           W   +   A   L S  +Q     V  +         
Sbjct: 12  VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPY 71

Query: 84  TLLCWAR--------NEQGNQRTPCTFHVVKAGECEHPVD-----KPSVQIKLGRNLNAS 130
            L    R         ++ +    C      AG  E         KP            S
Sbjct: 72  QLDSQGRLVLAEAQVGDERDYV--CVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLS 129

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN---------------NASAGRIITNQ 175
           V+ +       C+ +   P  K+ W  NG  +                   ++G +    
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTS 189

Query: 176 TLVLQSVTRHSGGLYACSAINSQGEGG-----STPFDLNIN 211
           TL L+         + C+A  S  EG      S  F L ++
Sbjct: 190 TLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 110 CEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASA 168
           C  PV      ++   +LN +   EG+     C    +     + W   NG  +++ A  
Sbjct: 339 CYAPVI-----VEPPADLNVT---EGMAAELKCRASTSLT--SVSWITPNGTVMTHGAYK 388

Query: 169 GRIITNQ--TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
            RI      TL   +VT    G+Y C   NS G   +    LN+ 
Sbjct: 389 VRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGN-TTASATLNVT 432

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 21/190 (11%)

Query: 128 NASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSG 187
           +  +   G  +   C            W     +  N        T  TL +  V+  + 
Sbjct: 9   SRYLAQIGDSVSLTCSTTGCES-PFFSWRTQIDSPLNG-KVTNEGTTSTLTMNPVSFGNE 66

Query: 188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT 247
             Y C+A     +       + I          +  P+              + + V C+
Sbjct: 67  HSYLCTATCESRKL-EKGIQVEIYSFPKDPEIHLSGPL-----------EAGKPITVKCS 114

Query: 248 V-DANPQAQY-FTWAFNN----SDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA 301
           V D  P  +        +    S          S++  S  V  +TP  E     L+C A
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEV-TFTPVIEDIGKVLVCRA 173

Query: 302 RNEQGSQRTP 311
           +       + 
Sbjct: 174 KLHIDEMDSV 183

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 15/107 (14%)

Query: 110 CEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASA 168
           C  P       +   R+LN S   EG      C     P    + W   NG  +S+ +  
Sbjct: 350 CSAPF-----IMDAPRDLNIS---EGRMAELKCR--TPPM-SSVKWLLPNGTVLSHASRH 398

Query: 169 GRI--ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKM 213
            RI  + + TL    V     G+Y C   N  G   +    LN++  
Sbjct: 399 PRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNVSTA 444

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 14/92 (15%)

Query: 134 EGVDIYFDCHIQANPPYKK--LIWTHNGITISNNASAGRIITNQ-----------TLVLQ 180
            G  I F   +      K   + W        ++     +  +             L + 
Sbjct: 18  VGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHIT 77

Query: 181 SVTRHSGGLYACSAINSQGEGGSTPFDLNINK 212
                  G Y C           + F+L +++
Sbjct: 78  DAQPAFTGSYRCEVSTKDKF-DCSNFNLTVHE 108

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 10/72 (13%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-----TNQTLVLQSVTRHSGG 188
            G D+   C +        + W  +   I  +    +       T   LV++  +    G
Sbjct: 22  PGEDVELRCELSRAGT--PVHWLKDRKAIRKSQ---KYDVVCEGTMAMLVIRGASLKDAG 76

Query: 189 LYACSAINSQGE 200
            Y C    S+  
Sbjct: 77  EYTCEVEASKST 88

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 24/192 (12%), Positives = 48/192 (25%), Gaps = 46/192 (23%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHN------------GITISNNASAGRI---ITNQTLV 178
            G ++           Y++L W H               T+  +    R+    TN  L 
Sbjct: 13  TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72

Query: 179 LQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR 238
           + +V++   G Y    ++   +       + + +MV        +P+             
Sbjct: 73  IYNVSKEDRGDYYMRMLHETEDQWK--ITMEVYEMV-------SKPMIYWE--------- 114

Query: 239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL 298
                ++C V      +               L S   +  S                  
Sbjct: 115 CSNATLTCEVLEGTDVEL-KLYQGK-----EHLRSLRQKTMSYQWTNLR-------APFK 161

Query: 299 CWARNEQGSQRT 310
           C A N    +  
Sbjct: 162 CKAVNRVSQESE 173

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 10/90 (11%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR----IITNQTLVLQSV---- 182
           ++++G     +C  +  P    + W   G  +  +    R    ++ + +L    +    
Sbjct: 20  IVSKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78

Query: 183 -TRHSGGLYACSAINSQGEGGSTPFDLNIN 211
            +R   G+Y C A N  GE  S    L + 
Sbjct: 79  KSRPDEGVYVCVARNYLGEAVSHDASLEVA 108

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT-NQTLVLQSVTRHSGGLYAC 192
            G  +   C  +      K+  + +   + +  S G +   N  L  + V    GG+Y C
Sbjct: 260 LGDTLTIRCDTKQQGM-TKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTC 318

Query: 193 SAINSQGEGGSTPFDLNINKM 213
            A+       +   +L +   
Sbjct: 319 YAMGETFN-ETLSVELKVYNF 338

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGGL 189
           EG  +   C + A P    + W  +G  + ++  +   I N      L +   + +  G 
Sbjct: 32  EGNQVNITCEVFAYPS-ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90

Query: 190 YACSAINSQGE 200
           Y C+A+N  G+
Sbjct: 91  YNCTAVNRIGQ 101

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 9/100 (9%)

Query: 106 KAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNN 165
           +    +   D+   Q +       + + EG    F C + A+ P   + W  +   +  +
Sbjct: 468 EYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSP-PVVTWHKDDRELKQS 526

Query: 166 ASAGRIITNQ-----TLVLQSVTRHSGGLYACSAINSQGE 200
               + +         L +  V     G Y   A NS G 
Sbjct: 527 V---KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGT 563

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 11/72 (15%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-----TNQTLVLQSVTRHSGG 188
            G +I   C I  N P K   WT NG+ +  +    R+          LV+ +      G
Sbjct: 21  LGKEICLKCEISENIPGK---WTKNGLPVQES---DRLKVVQKGRIHKLVIANALTEDEG 74

Query: 189 LYACSAINSQGE 200
            Y  +       
Sbjct: 75  DYVFAPDAYNVT 86

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 11/80 (13%)

Query: 132 LNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQ----------TLVLQ 180
           L+ G  +  +C  +          W +      +     R +  Q          TL + 
Sbjct: 20  LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79

Query: 181 SVTRHSGGLYACSAINSQGE 200
            VTR   GLY C+A +    
Sbjct: 80  GVTRSDQGLYTCAASSGLMT 99

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 132 LNEGVDIYFDC---HIQANP-PYKKLIWTHNGITISNN---------ASAGRIITNQTLV 178
           L+  V+++  C    +   P P   L W  NG  ++            +A   + +  L 
Sbjct: 9   LHTAVEMHHWCIPFSVDGQPAP--SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 66

Query: 179 LQSVTRHSGGLYACSAINSQGE 200
           L   T  + G Y   A N  G+
Sbjct: 67  LNQPTHVNNGNYTLLAANPFGQ 88

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 25/166 (15%), Positives = 40/166 (24%), Gaps = 24/166 (14%)

Query: 173 TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQR 232
              TL L  V    GG Y C           T F L+   +V  +           S   
Sbjct: 88  AAPTLRLTHVHPQDGGRYWCQVAQ---WSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAE 144

Query: 233 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSEL 292
           +        + ++C       A   TW    +        +Y              +SE+
Sbjct: 145 VVQVDEGNDITMTCPCTDCANANV-TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEI 203

Query: 293 EY-------GTLL-------------CWARNEQGSQRTPCTFHVVK 318
                      L+             C     QG      +  ++K
Sbjct: 204 AGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 18/87 (20%)

Query: 134 EGVDIYFDCHIQANP-PYKKLIWTHNGITISNNA---------------SAGRIITNQTL 177
            G  +   C    +P P  ++ W   G   ++                 +        T+
Sbjct: 35  VGGSVELHCEAVGSPVP--EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTI 92

Query: 178 VLQSVTRHSGGLYACSAINSQGEGGST 204
            + ++     G Y C A N       T
Sbjct: 93  SIDTLVEEDTGTYECRASNDPDRNHLT 119

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 33/301 (10%), Positives = 81/301 (26%), Gaps = 50/301 (16%)

Query: 28  EQVLVSCTVDAN---PQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGT 84
           +   ++ TV  +   P    +TW  ++      P         +T+       +    G+
Sbjct: 18  DGFTLTATVAGDEPLPSNLTYTWTKDDQ-----PHE------NNTATLTVADATSENAGS 66

Query: 85  LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI 144
                ++            +++  E    + +P              ++   D+     +
Sbjct: 67  YKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHF----------YVSSQTDVELHATV 116

Query: 145 QA---NPPYKKLI----WTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINS 197
           +      P         W+     I          T Q + +Q  T    G+Y       
Sbjct: 117 KFSGGKTPADNYELHYSWSKGEDVID---------TTQDITIQEFTADKNGVYTVKVWGE 167

Query: 198 QGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF 257
             +  ++     +   +N+  + ++        +     + +E ++   +   N   +Y 
Sbjct: 168 SEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY- 226

Query: 258 TWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEY--------GTLLCWARNEQGSQR 309
            W +   +    P    S    +      TP   L              C A+  Q  + 
Sbjct: 227 NW-YLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIED 285

Query: 310 T 310
            
Sbjct: 286 E 286

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 113 PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII 172
           P  KP       +   +  +  G    F+   +      K+ W   G  IS +    +  
Sbjct: 3   PGKKPVSAFS--KKPRSVEVAAGSPAVFEAETERAGV--KVRWQRGGSDISAS---NKYG 55

Query: 173 -----TNQTLVLQSVTRHSGGLYACSAINSQGE 200
                T  TL ++ V     G YA  A +S+ +
Sbjct: 56  LATEGTRHTLTVREVGPADQGSYAVIAGSSKVK 88

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 19/178 (10%)

Query: 146 ANPPYKKLIWTHNGITISNNASAGRI-------ITNQTLVLQSVTRHSGGLYACSAINSQ 198
             P Y +++ T+N        + GR          N +L +        G Y        
Sbjct: 46  EIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVER-- 103

Query: 199 GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT 258
             G    +    NK+   +   I++P     +    G        +  + +A P   + +
Sbjct: 104 --GRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTF-S 160

Query: 259 WAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV 316
           W  N         T  S           TP  E     L C  + +     T  T  +
Sbjct: 161 WTGNALSPLDPETTRSSEL-------TLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 10/90 (11%)

Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII--- 172
             S Q+++ +++    +       F C +          W  NG+ +  +    RI    
Sbjct: 4   GSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKV--TGKWYKNGVEVRPS---KRITISH 58

Query: 173 --TNQTLVLQSVTRHSGGLYACSAINSQGE 200
                 LV+  V     G Y          
Sbjct: 59  VGRFHKLVIDDVRPEDEGDYTFVPDGYALS 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.98
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.98
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.98
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.98
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.98
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.98
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.97
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.97
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.97
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.97
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.97
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.97
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.97
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.97
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.97
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.97
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.97
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.96
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.96
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.96
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.96
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.96
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.96
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.95
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.95
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.94
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.94
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.94
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.94
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.94
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.93
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.93
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.93
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.93
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.93
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.92
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.92
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.92
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.92
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.92
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.92
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.92
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.92
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.92
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.92
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.92
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.91
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.91
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.91
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.91
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.91
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.91
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.91
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.91
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.91
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.91
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.9
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.9
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.9
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.9
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.9
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.9
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.9
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.9
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.9
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.9
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.9
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.9
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.89
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.89
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.89
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.89
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.89
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.89
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.89
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.88
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.88
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.88
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.88
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.88
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.88
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.88
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.88
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.88
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.88
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.88
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.88
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.88
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.88
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.88
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.88
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.88
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.88
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.88
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.88
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.87
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.87
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.87
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.87
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.87
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.87
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.87
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.87
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.87
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.87
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.87
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.87
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.86
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.86
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.86
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.86
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.86
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.86
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.86
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.86
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.86
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.85
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.85
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.85
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.85
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.85
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.85
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.85
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.85
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.85
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.85
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.85
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.85
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.85
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.85
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.84
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.84
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.84
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.84
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.84
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.84
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.84
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.84
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.84
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.83
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.83
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.83
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.83
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.83
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.83
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.83
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.83
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.83
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.82
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.82
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.82
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.82
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.82
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.82
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.82
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.82
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.82
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.82
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.81
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.81
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.81
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.81
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.81
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.81
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.81
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.81
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.81
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.81
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.81
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.81
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.8
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.8
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.8
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.79
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.79
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.79
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.79
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.79
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.79
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.79
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.79
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.79
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.79
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.79
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.78
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.78
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.78
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.78
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.78
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.78
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.77
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.77
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.77
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.77
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.77
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.77
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.77
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.77
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.77
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.77
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.77
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.77
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.76
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.76
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.76
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.76
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.76
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.76
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.76
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.76
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.76
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.76
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.76
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.76
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.76
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.76
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.76
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.75
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.75
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.75
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.75
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.75
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.75
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.75
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.75
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.75
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.75
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.75
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.75
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.75
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.75
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.74
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.74
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.74
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.74
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.74
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.74
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.74
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.74
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.74
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.74
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.74
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.74
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.73
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.73
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.73
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.73
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.73
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.73
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.73
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.73
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.73
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.73
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.73
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.73
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.73
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.73
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.73
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.72
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.72
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.72
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.72
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.72
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.72
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.72
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.72
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.72
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.72
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.72
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.72
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.71
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.71
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.71
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.71
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.71
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.71
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.71
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.71
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.7
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.7
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.7
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.7
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.7
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.7
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.7
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.7
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.7
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.7
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.69
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.69
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.69
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.69
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.69
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.69
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.69
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.69
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.68
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.68
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.67
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.67
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.67
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.67
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.66
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.66
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.66
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.66
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.66
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.66
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.66
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.66
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.66
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.65
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.65
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.65
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.65
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.65
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.65
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.65
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.64
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.64
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.64
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.64
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.64
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.64
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.63
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.63
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.63
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.63
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.63
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.62
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.62
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.62
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.61
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.61
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.6
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.6
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.6
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.59
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.59
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.59
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.59
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.58
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.57
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.57
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.57
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.55
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.54
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.54
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.54
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.54
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.53
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.53
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.53
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.52
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.52
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.52
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.52
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.51
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.51
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.5
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.49
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.49
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.48
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.48
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.48
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.48
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.47
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.47
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.47
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.46
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.46
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.46
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.46
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.44
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.44
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.44
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.43
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.43
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.43
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.43
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.43
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.43
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.43
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.43
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.43
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.42
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.42
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.42
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.42
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.41
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.41
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.41
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.41
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.41
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.41
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.4
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.4
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.4
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.4
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.4
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.39
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.39
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.39
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.38
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.38
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.38
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.38
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.37
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.37
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.37
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.36
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.36
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.36
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.36
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.35
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.35
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.35
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.34
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.34
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.34
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.34
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.34
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.34
1he7_A	126	High affinity nerve growth factor receptor; transf	99.34
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.34
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.33
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.33
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.32
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.32
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.32
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.31
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.31
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.31
1he7_A	126	High affinity nerve growth factor receptor; transf	99.3
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.3
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.3
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.3
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.29
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.29
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.28
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.28
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.28
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.28
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.28
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.28
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.27
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.27
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.27
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.26
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.26
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.26
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.26
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.26
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.25
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.25
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.25
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.25
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.24
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.24
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.24
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.24
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.23
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.23
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.23
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.22

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=2.9e-37  Score=270.01  Aligned_cols=278  Identities=17%  Similarity=0.297  Sum_probs=219.3

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      .+|.+ ...+....+.+|+.++|.|.+.+.|.+ .++|++++.. +................|.|.+++.+|+|.|+|.+
T Consensus         4 ~pP~~-~~~p~~~~~~~G~~v~l~C~~~g~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   80 (284)
T 2rik_A            4 APPFF-DLKPVSVDLALGESGTFKCHVTGTAPI-KITWAKDNRE-IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA   80 (284)
T ss_dssp             CCCEE-EECCCCEEEETTCCEEEEEEEESSSCC-EEEEEETTEE-CCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEE-EccccceEecCCCcEEEEEEEEcCCCC-EEEEEECCEE-CcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEE
Confidence            34444 445566778999999999998788988 9999999988 66554433333334568999999999999999999


Q ss_pred             EeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc
Q psy3823          90 RNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG  169 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~  169 (365)
                      .+..+.....+.|.|         ..+|.+...+.   ....+.+|+.+.|.|.+.+.|.+. +.|++++..+.......
T Consensus        81 ~n~~g~~~~~~~l~V---------~~~p~~~~~~~---~~~~v~~g~~~~l~C~~~g~p~~~-v~W~~~~~~~~~~~~~~  147 (284)
T 2rik_A           81 SNVAGKDSCSAQLGV---------QEPPRFIKKLE---PSRIVKQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFR  147 (284)
T ss_dssp             EETTEEEEEEEEEEE---------ECCCEEEECCC---SEEEEETTCCEEEEEEEESSSCCE-EEEEETTEECCCSSSEE
T ss_pred             EECCceEEEEEEEEc---------cCCCcccccCC---CceEecCCceEEEEEEEeeeCCCE-EEEEECCEECcCCCcEE
Confidence            998887778888888         56776554332   234578999999999999988776 99999999887544322


Q ss_pred             eEE--eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEE
Q psy3823         170 RII--TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT  247 (365)
Q Consensus       170 ~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  247 (365)
                      ...  ....|.|.+++..|+|.|+|.+.|..|... ..+.|.|.          .+|.+...+.. ..+..|+.+.|.|.
T Consensus       148 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~----------~~p~~~~~~~~-~~~~~g~~v~l~C~  215 (284)
T 2rik_A          148 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS-SSTSLKVK----------EPPVFRKKPHP-VETLKGADVHLECE  215 (284)
T ss_dssp             EEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEE-EEEEEEEE----------CCCBCCSCCCC-EEECTTCCEEEEEE
T ss_pred             EEEcCCEEEEEECCCCcccCEEEEEEEEcCCCcee-EEEEEEEe----------cCCcceeCCCc-ceecCCCeEEEEEE
Confidence            222  256799999999999999999999988654 67788888          78877654433 33789999999999


Q ss_pred             EeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         248 VDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       248 ~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      +.+.|.+. +.|++++.... .........++....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       216 ~~g~p~~~-v~W~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          216 LQGTPPFQ-VSWHKDKRELR-SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             CBSSSCCE-EEEEETTEEEC-BTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEecCCCE-EEEEECCEECc-CCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            99999998 99999886433 2334444555666789999999999999999999999999988888775

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1e-36  Score=292.22  Aligned_cols=289  Identities=16%  Similarity=0.294  Sum_probs=225.1

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      |.+.....|......+....+.+|+.++|.|.+.+.|.+ .++|+|++.. +................|.|.+++.+|+|
T Consensus       189 l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~i~W~k~g~~-i~~~~~~~~~~~~~~~~L~i~~v~~~D~G  266 (570)
T 3b43_A          189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI-KITWAKDNRE-IRPGGNYKMTLVENTATLTVLKVTKGDAG  266 (570)
T ss_dssp             EEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCC-EEEEEETTEE-CCTTSSEEEEEETTEEEEEESSBCGGGCE
T ss_pred             EEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCC-EEEEEECCEE-CcCCCcEEEEEECCEEEEEEcccCcccCE
Confidence            334433333334444455667899999999998889999 9999999988 65544433322333458999999999999


Q ss_pred             EEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEe
Q psy3823          84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITIS  163 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~  163 (365)
                      .|+|.|.|..|.....+.|.|         ..+|.+...+.   ....+.+|+.+.|.|.+.|.|.+. +.|++++..+.
T Consensus       267 ~Y~C~a~N~~g~~~~~~~l~V---------~~~p~~~~~~~---~~~~v~~g~~~~l~C~~~g~P~p~-v~W~k~~~~l~  333 (570)
T 3b43_A          267 QYTCYASNVAGKDSCSAQLGV---------QEPPRFIKKLE---PSRIVKQDEHTRYECKIGGSPEIK-VLWYKDETEIQ  333 (570)
T ss_dssp             EEEEEEEETTEEEEEEEEECC---------BCCCEEEECCC---SBCCEESSCEEEEEEEEESSSSCE-EEEEETTEECC
T ss_pred             EEEEEEECCCCcEEEEEEEEe---------ecCCcccccCC---CccEEcCCCcEEEEEEEeeCCCCE-EEEeECCEECC
Confidence            999999999988878888888         66777654332   223578999999999999998887 99999999987


Q ss_pred             eCCCCceEEe--eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCce
Q psy3823         164 NNASAGRIIT--NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQ  241 (365)
Q Consensus       164 ~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~  241 (365)
                      ..........  ...|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.          .+|.+...+... .+..|+.
T Consensus       334 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~----------~~P~~~~~~~~~-~~~~G~~  401 (570)
T 3b43_A          334 ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS-SSTSLKVK----------EPPVFRKKPHPV-ETLKGAD  401 (570)
T ss_dssp             CSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCE-EEEEECEE----------CCCEECSCCCCE-EECTTCC
T ss_pred             CCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEE-EEEEEEec----------CCCeeecCCCce-eecCCCE
Confidence            5443322222  46799999999999999999999999765 57788888          888776554443 3788999


Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE  321 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  321 (365)
                      +.|.|.+.|.|.|. +.|+++|.... ...+..+..++....|.|.++..+|+|.|+|.|.|..|.....+.|.|..++.
T Consensus       402 v~l~C~~~g~P~p~-v~W~k~g~~l~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~  479 (570)
T 3b43_A          402 VHLECELQGTPPFQ-VSWHKDKRELR-SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPR  479 (570)
T ss_dssp             EEEEEEEESSSSCC-CEEEETTEECC-SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCE
T ss_pred             EEEEEEEecCCCCE-EEEEECCEECc-CCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCc
Confidence            99999999999998 99999987443 33444555556667799999999999999999999999998888888865544

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=4.7e-37  Score=294.57  Aligned_cols=285  Identities=15%  Similarity=0.274  Sum_probs=228.5

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +.+.+.++|.+.........+.+|+.+.|.|.+.+.|.+ .++|+|++.. +................|.|.+++.+|+|
T Consensus       283 ~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p-~v~W~k~~~~-l~~~~~~~~~~~~~~~~L~i~~v~~~D~G  360 (570)
T 3b43_A          283 AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI-KVLWYKDETE-IQESSKFRMSFVESVAVLEMYNLSVEDSG  360 (570)
T ss_dssp             EEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSC-EEEEEETTEE-CCCSSSEEEEEETTEEEEEEESCCGGGCE
T ss_pred             EEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCC-EEEEeECCEE-CCCCCcEEEEEECCEEEEEECCCCcccCE
Confidence            456677888877654444557899999999998899999 9999999998 76555433333344568999999999999


Q ss_pred             EEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEe
Q psy3823          84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITIS  163 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~  163 (365)
                      .|+|.|.|..|.....+.|.|         ..+|.+...+    ....+.+|+++.|.|.+.|.|.+. +.|+++|..+.
T Consensus       361 ~Y~C~a~N~~g~~~~~~~l~V---------~~~P~~~~~~----~~~~~~~G~~v~l~C~~~g~P~p~-v~W~k~g~~l~  426 (570)
T 3b43_A          361 DYTCEAHNAAGSASSSTSLKV---------KEPPVFRKKP----HPVETLKGADVHLECELQGTPPFQ-VSWHKDKRELR  426 (570)
T ss_dssp             EEEEEEEBTTBCCEEEEEECE---------ECCCEECSCC----CCEEECTTCCEEEEEEEESSSSCC-CEEEETTEECC
T ss_pred             EEEEEEEeCCCEEEEEEEEEe---------cCCCeeecCC----CceeecCCCEEEEEEEEecCCCCE-EEEEECCEECc
Confidence            999999999998888888998         6677654433    334577899999999999999888 99999999886


Q ss_pred             eCCCCceEEe--eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCce
Q psy3823         164 NNASAGRIIT--NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQ  241 (365)
Q Consensus       164 ~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~  241 (365)
                      ..........  ..+|.|.++...|+|.|+|.|.|..|... ..+.|.|.          .+|.+....... .+..|+.
T Consensus       427 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v~----------~~P~~~~~~~~~-~~~~g~~  494 (570)
T 3b43_A          427 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT-CVGSITLK----------APPRFVKKLSDI-STVVGEE  494 (570)
T ss_dssp             SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEE-EEEEEEEC----------CCCEEEECCCCB-CCBTTCC
T ss_pred             CCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEE-EEEEEEec----------cCCcccccCCCc-eecCCCe
Confidence            5433222222  25799999999999999999999999765 56778888          888877655443 3789999


Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      +.|.|.+.|.|++. +.|++++...........+...+....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       495 ~~l~c~~~g~p~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          495 VQLQATIEGAEPIS-VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL  569 (570)
T ss_dssp             EEEEEEEESCSSCC-CEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             EEEEEEEecCCCCE-EEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence            99999999999998 9999997544444444444445667789999999999999999999999999999988774

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=6.1e-35  Score=256.04  Aligned_cols=276  Identities=16%  Similarity=0.246  Sum_probs=205.8

Q ss_pred             eCCceEEEEecCCcEEEEEEeCCCC-CcceEEEEe-CCCcCCCCCC-cee-EecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          16 QSQQRIYGALRNEQVLVSCTVDANP-QAQYFTWAF-NNSGTAPRPL-TSY-SIQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        16 ~~~~~~~~v~~G~~~~l~C~~~~~p-~~~~v~W~~-~~~~~l~~~~-~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      ...+....+.+|+.++|.|.+.+.| .+ .++|++ ++.. +.... ... ...+.....|.|.+++.+|+|.|+|.+.+
T Consensus         6 ~~~p~~~~v~~G~~v~l~C~~~~~~~~~-~i~W~~~~g~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   83 (291)
T 1qz1_A            6 DIVPSQGEISVGESKFFLCQVAGDAKDK-DISWFSPNGEK-LSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA   83 (291)
T ss_dssp             EEESSSEEEETTCCEEEEEEESSCCSCC-EEEEECTTSCB-CCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EecCCCceEeCCCeEEEEEEeCCCCCCc-EeEEECCCCeE-CccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEc
Confidence            3345556689999999999987776 56 999999 6666 54332 222 22234456899999999999999999999


Q ss_pred             CCCCC-cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCce
Q psy3823          92 EQGNQ-RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR  170 (365)
Q Consensus        92 ~~~~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~  170 (365)
                      ..+.. ...+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+........
T Consensus        84 ~~g~~~~~~~~l~v---------~~~~~~~~~~----~~~~~~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~  149 (291)
T 1qz1_A           84 EDGTQSEATVNVKI---------FQKLMFKNAP----TPQEFKEGEDAVIVCDVVSSLPPT-IIWKHKGRDVILKKDVRF  149 (291)
T ss_dssp             TTSCEEEEEEEEEE---------ECCSEEEECC----SSEEEETTSCEEECCEEECSSCCE-EEEEETTSCSSTTCCTTE
T ss_pred             CCCCeeEEEEEEEe---------eccccccCCC----CcccccCCCeEEEEEEeccCCCCE-EEEEECCEEcccCCCceE
Confidence            87643 36778888         5567655544    334688999999999999988876 999999988754333332


Q ss_pred             -EEeeceEEEeeecCCCCeEEEEEEEcCCC-CCCcccEEEEEeeeeecccccCCCCceecCc-cceeeeecCceEEEEEE
Q psy3823         171 -IITNQTLVLQSVTRHSGGLYACSAINSQG-EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQ-QRIYGALRNEQVLVSCT  247 (365)
Q Consensus       171 -~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~~l~C~  247 (365)
                       ...+..|.|.++...|+|.|+|.+.|..+ ......+.+.|.          .+|.+.... .....+..|+.+.|.|.
T Consensus       150 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~----------~~p~~~~~~~~~~~~~~~g~~v~l~C~  219 (291)
T 1qz1_A          150 IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN----------VPPTVQARQSIVNATANLGQSVTLVCD  219 (291)
T ss_dssp             EECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEE----------EEEEEEESCSEEEEETTSCCCEEEEEE
T ss_pred             EEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEe----------cCCcccccccccccccccCceEEEEEE
Confidence             33467899999999999999999998764 333355677777          666655432 22334788999999999


Q ss_pred             EeeeCCCceeEEEeCCCCCCCCCC-ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         248 VDANPQAQYFTWAFNNSDTAPRPL-TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       248 ~~~~p~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      +.+.|.|. +.|+++|........ ..++......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       220 ~~g~p~p~-i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          220 ADGFPEPT-MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             EEEESCCE-EEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEeCCCc-EEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            99999998 999999875433221 11222223335799999999999999999999999999999998864

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=255.33  Aligned_cols=285  Identities=17%  Similarity=0.268  Sum_probs=200.3

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeE-ecCCeEEEEEEccCCC-CCCeEEEE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS-IQDGSTSVARYTPTSE-LEYGTLLC   87 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~-~~~~~~~~l~i~~~~~-~d~G~Y~C   87 (365)
                      .+|.+.. .+....+.+|+.++|.|.+.+.|.+ .++|++++.. +........ ..++....|.|.+++. +|+|.|+|
T Consensus         5 ~~P~~~~-~p~~~~v~~G~~v~l~C~~~g~p~~-~i~W~k~g~~-i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C   81 (304)
T 2yd9_A            5 EPPRFIK-EPKDQIGVSGGVASFVCQATGDPKP-RVTWNKKGKK-VNSQRFETIEFDESAGAVLRIQPLRTPRDENVYEC   81 (304)
T ss_dssp             CCCEEEE-CCCCEEEETTSCEEEEEEEECSSCC-EEEEC--------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred             cCCeeee-cCCceEecCCCeEEEEEEEEEeCCC-eEEEEECCEE-CCCCceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence            4565543 4456678999999999998889999 9999999988 655443222 2445557899999998 99999999


Q ss_pred             EEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC
Q psy3823          88 WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS  167 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~  167 (365)
                      .|.+..+.....+.|.|.....  .+...|.+...+    ....+.+|+.+.|.|.+.|.|.+. +.|++++..+.....
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~--~p~~~p~i~~~~----~~~~v~~g~~v~l~C~~~g~p~~~-v~W~k~~~~~~~~~~  154 (304)
T 2yd9_A           82 VAQNSVGEITVHAKLTVLREDQ--LPSGFPNIDMGP----QLKVVERTRTATMLCAASGNPDPE-ITWFKDFLPVDPSAS  154 (304)
T ss_dssp             EEECSSCEECCEEEEEEECGGG--CCTTCCEEEECC----CCEEEETTSCEEECCEEECSSCCE-EEEEETTEECCGGGG
T ss_pred             EEECCCCeEEEEEEEEEecccc--CCCCCCeeecCC----ccEEEeCCCeEEEEEECccCCCCe-EEEEECCEECcCCCC
Confidence            9999988877888888843211  011125555443    334678899999999999988876 999999998865332


Q ss_pred             Cc--eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEE
Q psy3823         168 AG--RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS  245 (365)
Q Consensus       168 ~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  245 (365)
                      ..  ....++.|.|.+++.+|+|.|+|.+.|..|...+....+.|...       ..+|.+...+.. ..+..|+.+.|.
T Consensus       155 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~-------~~~P~~~~~~~~-~~v~~G~~v~l~  226 (304)
T 2yd9_A          155 NGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ-------NVAPRFSILPMS-HEIMPGGNVNIT  226 (304)
T ss_dssp             TTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC-------CEEEEEEECCCC-BCCCTTCCEEEE
T ss_pred             cceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEee-------ccCCcEEecCCc-eEEcCCCeEEEE
Confidence            21  23336689999999999999999999998865544455655410       034444433333 337899999999


Q ss_pred             EEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCc
Q psy3823         246 CTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       246 C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  320 (365)
                      |.+.|.|.|. +.|+++|........     .......|.|.++  +|+|.|+|.|.|..|..+.++.|.|...+
T Consensus       227 C~~~g~p~p~-v~W~~~~~~l~~~~~-----~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  293 (304)
T 2yd9_A          227 CVAVGSPMPY-VKWMQGAEDLTPEDD-----MPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP  293 (304)
T ss_dssp             EEEEEESCCE-EEEEETTEECSCSSS-----CCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred             EEEeeeCCCE-EEEEECCEECCCccc-----ccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence            9999999998 999999864432211     1123446777776  69999999999999999999999887653

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=253.19  Aligned_cols=274  Identities=15%  Similarity=0.235  Sum_probs=201.3

Q ss_pred             eCCceEEEEecCCcEEEEEEeCCCCCcceEEEEe-CCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          16 QSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF-NNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        16 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~-~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ...+....+.+|+.++|.|.+.+.| + .+.|++ ++.. +..........++....|.|.+++.+|+|.|+|.+.+..+
T Consensus         8 ~~~~~~~~v~~G~~v~l~C~~~~~p-~-~v~W~~~~g~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g   84 (291)
T 2wim_A            8 TISLSKVELSVGESKFFTCTAIGEP-E-SIDWYNPQGEK-IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG   84 (291)
T ss_dssp             EESCSEEEEETTCCEEEEEEEESCC-S-EEECBCTTCCB-CCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             EEeccceEecCCCcEEEEEEEeCCC-C-ceEEECCCCcC-ccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccC
Confidence            3445567789999999999977766 4 899999 5655 6554444444455567899999999999999999999877


Q ss_pred             CCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCce-EE
Q psy3823          95 NQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR-II  172 (365)
Q Consensus        95 ~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~-~~  172 (365)
                      ... ..+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+........ ..
T Consensus        85 ~~~~~~~~l~v---------~~~~~~~~~~----~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~  150 (291)
T 2wim_A           85 QTQEATVVLEI---------YQKLTFREVV----SPQEFKQGEDAEVVCRVSSSPAPA-VSWLYHNEEVTTISDNRFAML  150 (291)
T ss_dssp             CEEEEEEEEEE---------ECCCBCCSCC----CSEEEETTSCEEECCCCBCSSCCE-EEEECC----CBCCCSSEEEC
T ss_pred             ceEEEEEEEEe---------cCCcceEeCC----CChhhcCCCCEEEEEEEccCCCCE-EEEEECCccccccCCceEEEc
Confidence            654 5677777         4444432222    334678999999999999988777 999999988765333332 33


Q ss_pred             eeceEEEeeecCCCCeEEEEEEEcCCCC-CCcccEEEEEeeeeecccccCCCCceecCcc-ceeeeecCceEEEEEEEee
Q psy3823         173 TNQTLVLQSVTRHSGGLYACSAINSQGE-GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQ-RIYGALRNEQVLVSCTVDA  250 (365)
Q Consensus       173 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~  250 (365)
                      .+..|.|.++...|+|.|+|.+.+..+. .....+.+.+.          .+|.+..... ....+..|+.+.|.|.+.+
T Consensus       151 ~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~----------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g  220 (291)
T 2wim_A          151 ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN----------VPPAISMPQKSFNATAERGEEMTFSCRASG  220 (291)
T ss_dssp             TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE----------BCCCCBCSCSEEECCSSSCCEEEEECBCCC
T ss_pred             cCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEec----------cCCccccCcccccceecCCCeEEEEEEeec
Confidence            4678999999999999999999988753 33345667777          6776654332 1233788999999999999


Q ss_pred             eCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCc
Q psy3823         251 NPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       251 ~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  320 (365)
                      .|.+. +.|+++|..... .......  .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..++
T Consensus       221 ~p~p~-v~W~~~g~~~~~-~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~  286 (291)
T 2wim_A          221 SPEPA-ISWFRNGKLIEE-NEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH  286 (291)
T ss_dssp             BSCCE-EEEEETTEECCC-TTTEEEC--STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred             CCCCe-EEEEECCEECcC-CccEEEc--CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence            99998 999999874432 2223222  223469999999999999999999999999999999887654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=2.2e-33  Score=257.54  Aligned_cols=279  Identities=18%  Similarity=0.301  Sum_probs=210.8

Q ss_pred             eecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC---CceeEecCCeEEEEEEccCCCCCC
Q psy3823           6 FNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP---LTSYSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus         6 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~---~~~~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      +.+..+|.. ...+....+.+|+.+.|.|.+.+.|.+ .++|++++.. +...   .......++   .|.|.+++.+|+
T Consensus       116 l~v~~p~~~-~~~~~~~~~~~G~~v~l~C~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~---~L~i~~~~~~d~  189 (403)
T 3laf_A          116 VMVAGPLRF-LSQTESITAFMGDTVLLKCEVIGDPMP-TIHWQKNQQD-LNPIPGDSRVVVLPSG---ALQISRLQPGDS  189 (403)
T ss_dssp             EEECCCCEE-CSCCCCEEEETTSCEEECCCEECSSCC-EEEEEESSSB-CCCCTTCCSEEECTTS---CEEECSCCGGGC
T ss_pred             EEecCCCcc-ccCCCcEEEEcCCeEEEEEEEcccCCC-eEEEEECCEe-ccccCCceEEEEcCCc---eEEEcccccccC
Confidence            334444443 334456678899999999998788999 9999999987 6422   222222334   799999999999


Q ss_pred             eEEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCe----EEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe
Q psy3823          83 GTLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPS----VQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH  157 (365)
Q Consensus        83 G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~  157 (365)
                      |.|+|.+.+..+... ..+.+.|.         ..|.    ..+....  ....+.+|+.+.|.|.+.+.|.+. +.|++
T Consensus       190 G~Y~C~~~n~~~~~~~~~~~l~v~---------~~p~~~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~  257 (403)
T 3laf_A          190 GVYRCSARNPASTRTGNEAEVRIL---------SDPGLHRQLYFLQRP--SNVIAIEGKDAVLECCVSGYPPPS-FTWLR  257 (403)
T ss_dssp             EEEEEEEECSSCCCBCCCEEEEEE---------CCCCCCEEEEEEECC--CCEEEETTSCEEECCEEEEESCCE-EEEEE
T ss_pred             EEEEEEEEcCCCceeccceeEEEe---------cCCCcccCceEecCC--CceEecCCCcEEEEEEcCCCCCCe-EEEEE
Confidence            999999999877644 66777773         2221    1111111  334678999999999999988886 99999


Q ss_pred             CCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeee
Q psy3823         158 NGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGAL  237 (365)
Q Consensus       158 ~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~  237 (365)
                      ++..+...........+..|.|.++..+|+|.|+|.+.|..|... ..+.|.|.          .+|.+...+.... +.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~----------~~p~~~~~~~~~~-~~  325 (403)
T 3laf_A          258 GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENIS-ASAELTVL----------VPPWFLNHPSNLY-AY  325 (403)
T ss_dssp             TTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE----------EEEEEEECCCCEE-CC
T ss_pred             CCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceE-EEEEEEEE----------CCCcEeecCcceE-Ee
Confidence            999887544444444567899999999999999999999987654 67788888          6777665554433 78


Q ss_pred             cCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      .|+.+.|.|.+.+.|.+. +.|+++|..... .........   +.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       326 ~g~~v~l~C~~~g~p~p~-v~W~~~g~~~~~-~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  400 (403)
T 3laf_A          326 ESMDIEFECAVSGKPVPT-VNWMKNGDVVIP-SDYFQIVGG---SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP  400 (403)
T ss_dssp             TTCCEEECCEEEEESCCE-EEEEETTEECCC-SSSEEEETT---TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             cCCeEEEEEEEeeccCCE-EEEEECCEECCC-CCcEEEecC---ccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence            999999999999999998 999999875432 222222222   359999999999999999999999999999888876


Q ss_pred             cC
Q psy3823         318 KA  319 (365)
Q Consensus       318 ~~  319 (365)
                      .+
T Consensus       401 ~P  402 (403)
T 3laf_A          401 KP  402 (403)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=255.32  Aligned_cols=289  Identities=13%  Similarity=0.158  Sum_probs=197.9

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEE
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL   86 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   86 (365)
                      ...+|.+..  +....+.+|+.++|.|.+.+. |.+ .++|++++.. +.........  .....|.|.+++.+|+|.|+
T Consensus         4 ~~~~P~~~~--~~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~   77 (317)
T 2y25_A            4 PFTGPHFVE--YLSWEVTGECNVLLKCKVANIKKET-HIVWYKDERE-ISVDEKHDFK--DGICTLLITEFSKKDAGIYE   77 (317)
T ss_dssp             SSSCCEEEE--EEEEEEETTTEEEEEEEEESCCTTC-EEEEEETTEE-ECCSCC-------CCEEEEETTCCSTTCSCEE
T ss_pred             ccCCCcEee--eeeEEECCCCeEEEEEEEcCCCCCC-EEEEEECCeE-cCCCCcEEEE--CCeEEEEEccCCcccCeEEE
Confidence            345676653  345788999999999996666 777 9999999988 6644332221  22258999999999999999


Q ss_pred             EEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe----------cCCCCeeEEE
Q psy3823          87 CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA----------NPPYKKLIWT  156 (365)
Q Consensus        87 C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~----------~p~~~~i~W~  156 (365)
                      |.+.+..+.....+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.+          .|.+. +.|+
T Consensus        78 C~~~n~~g~~~~~~~l~v---------~~~~~~~~~~----~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~-i~W~  143 (317)
T 2y25_A           78 VILKDDRGKDKSRLKLVD---------EAFKELMMEV----CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLK-VNWS  143 (317)
T ss_dssp             EEEESSSCEEEEEECCST---------HHHHHHHHHH----HHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCE-EEEE
T ss_pred             EEEECCCCcEEEEEEEEE---------ecCccccccC----CceecccCCCeEEEeeccccEEEEEeccCCCCcE-EEEE
Confidence            999988876555555544         2222111111    1223456666666666555          45555 9999


Q ss_pred             eCCeEEeeCCCCceEEe--eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeee----------eecccccCCCC
Q psy3823         157 HNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKM----------VNLIFNSIDEP  224 (365)
Q Consensus       157 ~~~~~l~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~----------~~~~~~~~~~p  224 (365)
                      +++..+...........  ...|.|.+++..|+|.|+|.+.|..|... ..+.+.+...          ..+.+.....|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p  222 (317)
T 2y25_A          144 HNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ-KTVDLSGQAYDEAYAEFQRLKQAAIAEKNRA  222 (317)
T ss_dssp             ESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEE-EEEEECHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             ECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEE-EEEEEeeeeccccchhhcccCCcccCcCCCC
Confidence            99988865433222222  24599999999999999999999877544 3444443210          00011112344


Q ss_pred             ceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeC-CCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         225 VCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQD-GSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       225 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      .+.........+..|+.+.|.|.+.|.|.+. +.|+++|..... .....+... +..+.|.|.+++.+|+|.|+|.|.|
T Consensus       223 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  300 (317)
T 2y25_A          223 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKNEKALAS-DDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN  300 (317)
T ss_dssp             EEEEBCCSEEEEETTSBBCEEEEEECSSCCE-EEEEESSSEECC-CSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEE
T ss_pred             cccccCCccEEEEcCCEEEEEEEEecCCCCE-EEEEECCEeCCC-CCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEe
Confidence            4444333444588999999999999999998 999999875432 333444333 6677899999999999999999999


Q ss_pred             CCccceecEEEEEEcC
Q psy3823         304 EQGSQRTPCTFHVVKA  319 (365)
Q Consensus       304 ~~g~~~~~~~l~v~~~  319 (365)
                      ..|..+..+.|.|..+
T Consensus       301 ~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          301 KYGSETSDFTVSVFIP  316 (317)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEcC
Confidence            9999999999988754

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=4e-32  Score=257.86  Aligned_cols=291  Identities=15%  Similarity=0.126  Sum_probs=213.3

Q ss_pred             EeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEe-CCCcCCCCCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823           5 IFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF-NNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus         5 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~-~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      .+.+..+|... ..+....+.+|+.++|.|.+.+.|.+ .++|++ ++.. +..........++   .|.|.+++.+|.|
T Consensus       108 ~l~V~~p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~-~v~W~~~~g~~-l~~~~~~~~~~~~---~L~i~~~~~~d~G  181 (524)
T 2ec8_A          108 YVFVRDPAKLF-LVDRSLYGKEDNDTLVRCPLTDPEVT-NYSLKGCQGKP-LPKDLRFIPDPKA---GIMIKSVKRAYHR  181 (524)
T ss_dssp             EEECCCSSCSB-CCCCCCCEETTSCEEECCCBSCCCCS-CEEEECSSSCC-CCSSCEEEEETTT---EEEEESCCGGGTT
T ss_pred             EEEECCCCccc-ccccceEEEcCCeEEEECcCCCCccc-eEEEEccCCcC-cCCCCceeECCCc---cEEEeccchhhCC
Confidence            44455555443 44555678899999999998776657 999998 6666 6554443444445   7999999999999


Q ss_pred             -EEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeE
Q psy3823          84 -TLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGIT  161 (365)
Q Consensus        84 -~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~  161 (365)
                       .|+|.|.+..+... ..+.|.|...     +..+|.+...+    ....+.+|+.+.|.|.+.+.|.+..+.|++++..
T Consensus       182 ~~Y~C~a~n~~~~~~s~~~~l~V~~~-----~~~~p~i~~~~----~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~  252 (524)
T 2ec8_A          182 LCLHCSVDQEGKSVLSEKFILKVRPA-----FKAVPVVSVSK----ASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQ  252 (524)
T ss_dssp             CEEEEEEC----CCCCCCEECCEECC-----CCSCCEEECSC----SEEEEETTSCEEEEEEEEESSTTCEEEEEETTCS
T ss_pred             ceEEEEEEECCceEEEEEEEEEEEeC-----CCCCCcEEecC----CcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCC
Confidence             99999998876654 4788888310     12466665544    3346889999999999999888777999999877


Q ss_pred             E--eeCCC-----CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCc--cc
Q psy3823         162 I--SNNAS-----AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQ--QR  232 (365)
Q Consensus       162 l--~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~--~~  232 (365)
                      +  .....     .........|.|.+++.+|+|.|+|.+.|..|... ..+.|.|.          .+|.+...+  ..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~----------~~p~~~~~~~~~~  321 (524)
T 2ec8_A          253 TKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN-VTTTLEVV----------DKGFINIFPMINT  321 (524)
T ss_dssp             CCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEE-EEEEEEEE----------SSCEEEEEESSCS
T ss_pred             CccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceE-EEEEEEEe----------ccCceEeecCCCc
Confidence            3  21110     11233467899999999999999999999988765 47888998          788765432  22


Q ss_pred             eeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCC----CEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         233 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDG----STSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       233 ~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~----~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ...+..|+.+.|.|.+.+.|.|..+.|+++|.........+....++    ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       322 ~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  401 (524)
T 2ec8_A          322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA  401 (524)
T ss_dssp             EEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             eEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceE
Confidence            34488999999999999998885599999987554333222222222    35689999999999999999999999999


Q ss_pred             eecEEEEEEcCcc
Q psy3823         309 RTPCTFHVVKAGE  321 (365)
Q Consensus       309 ~~~~~l~v~~~~~  321 (365)
                      +.++.|.|..++.
T Consensus       402 ~~~~~l~V~~~P~  414 (524)
T 2ec8_A          402 AIAFNVYVNTKPE  414 (524)
T ss_dssp             EEEEEEEECEEEE
T ss_pred             EEEEEEEEecCCe
Confidence            8888888865443

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=7.3e-32  Score=247.36  Aligned_cols=275  Identities=14%  Similarity=0.221  Sum_probs=201.3

Q ss_pred             eEeeCCceEEEEecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCCCCCc--eeEecCCeEEEEEEccC-----CCCCCeE
Q psy3823          13 VCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLT--SYSIQDGSTSVARYTPT-----SELEYGT   84 (365)
Q Consensus        13 ~~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~G~   84 (365)
                      .....++....+.+|+.++|.|.+.+ .|.+ .++|+|++.. +.....  .....++   .|.|.++     +.+|+|.
T Consensus        22 ~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~-~v~W~k~g~~-~~~~~~~~~~~~~~~---~l~i~~~~~~~~~~~D~G~   96 (403)
T 3laf_A           22 LHFVSEPSDAVTMRGGNVLLNCSAESDRGVP-VIKWKKDGLI-LALGMDDRKQQLPNG---SLLIQNILHSRHHKPDEGL   96 (403)
T ss_dssp             SEEEECCCCEEECTTCCEEECCEEECTTCCC-EEEEEETTEE-CCTTSCTTEEECTTS---CEEECSCCCBTTBCSSCEE
T ss_pred             EEEEeCCCceEEecCCcEEEEEEcCCCCCCc-eEEEEECCEE-CccCCcccEEEecCC---cEEEeeeeccCCCCCcceE
Confidence            33445667788899999999999544 6777 9999999987 654322  2233444   4666666     7789999


Q ss_pred             EEEEEEeCCCCC--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEE
Q psy3823          85 LLCWARNEQGNQ--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITI  162 (365)
Q Consensus        85 Y~C~a~~~~~~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l  162 (365)
                      |+|.+.+..+..  ...+.+.|         ..+|.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+
T Consensus        97 Y~C~~~~~~~~~~~s~~~~l~v---------~~p~~~~~~~----~~~~~~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~  162 (403)
T 3laf_A           97 YQCEASLGDSGSIISRTAKVMV---------AGPLRFLSQT----ESITAFMGDTVLLKCEVIGDPMPT-IHWQKNQQDL  162 (403)
T ss_dssp             EEEEEECGGGCEEECCCEEEEE---------CCCCEECSCC----CCEEEETTSCEEECCCEECSSCCE-EEEEESSSBC
T ss_pred             EEEEEEeCCCccEEEEEEEEEe---------cCCCccccCC----CcEEEEcCCeEEEEEEEcccCCCe-EEEEECCEec
Confidence            999998644332  36677877         4555543222    335688999999999999988876 9999999887


Q ss_pred             eeCCCC--ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCcee-----cCccceee
Q psy3823         163 SNNASA--GRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCK-----QSQQRIYG  235 (365)
Q Consensus       163 ~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~-----~~~~~~~~  235 (365)
                      ......  .....++.|.|.+++.+|+|.|+|.+.|..+...+..+.+.|.          ..|.+.     ........
T Consensus       163 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~----------~~p~~~~~~~~~~~~~~~~  232 (403)
T 3laf_A          163 NPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL----------SDPGLHRQLYFLQRPSNVI  232 (403)
T ss_dssp             CCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEE----------CCCCCCEEEEEEECCCCEE
T ss_pred             cccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEe----------cCCCcccCceEecCCCceE
Confidence            532221  1223367899999999999999999999888766567788887          555321     11122233


Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +..|+.+.|.|.+.+.|.+. +.|++++..............+   ..|.|.++..+|+|.|+|.|.|..|..+.++.|.
T Consensus       233 ~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  308 (403)
T 3laf_A          233 AIEGKDAVLECCVSGYPPPS-FTWLRGEEVIQLRSKKYSLLGG---SNLLISNVTDDDSGTYTCVVTYKNENISASAELT  308 (403)
T ss_dssp             EETTSCEEECCEEEEESCCE-EEEEETTEECCCSSSSEEEETT---TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ecCCCcEEEEEEcCCCCCCe-EEEEECCeeccCCCceEEECCc---cEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEE
Confidence            78999999999999999998 9999988754333333322222   2599999999999999999999999998888888


Q ss_pred             EEcCc
Q psy3823         316 VVKAG  320 (365)
Q Consensus       316 v~~~~  320 (365)
                      |..++
T Consensus       309 V~~~p  313 (403)
T 3laf_A          309 VLVPP  313 (403)
T ss_dssp             EEEEE
T ss_pred             EECCC
Confidence            86543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=7.2e-32  Score=269.25  Aligned_cols=287  Identities=15%  Similarity=0.250  Sum_probs=215.5

Q ss_pred             eecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeE----e-cCCeEEEEEEccCCCC
Q psy3823           6 FNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS----I-QDGSTSVARYTPTSEL   80 (365)
Q Consensus         6 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~----~-~~~~~~~l~i~~~~~~   80 (365)
                      +...+.|...........+.+|+.+.|.|.+.++|.+ .++|++++.. +........    . .....+.|.|.+++.+
T Consensus       423 v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p-~v~W~~~g~~-l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  500 (816)
T 3dmk_A          423 LGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP-EISWELDGKK-IANNDRYQVGQYVTVNGDVVSYLNITSVHAN  500 (816)
T ss_dssp             CCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCC-EEEEEETTEE-CCSCTTEEEEEEECTTSCEEEEEEESSCCTT
T ss_pred             EccccCCCceEecCcceEEcCCCCEEEEEEEecCCCC-EEEEEECCEE-CCCCCCcccccEEecCCCcEEEEEEeecccc
Confidence            3333433333333344567899999999998889999 9999999988 655443221    1 2334567999999999


Q ss_pred             CCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCe
Q psy3823          81 EYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGI  160 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~  160 (365)
                      |+|.|+|.|.|..|.....+.|.|         ..+|.+..  .   ....+.+|+.+.|.|.+.+.|.+. +.|++++.
T Consensus       501 d~G~Y~C~a~n~~g~~~~~~~l~V---------~~~p~~~~--~---~~~~v~~G~~v~l~C~~~g~p~~~-i~W~k~~~  565 (816)
T 3dmk_A          501 DGGLYKCIAKSKVGVAEHSAKLNV---------YGLPYIRQ--M---EKKAIVAGETLIVTCPVAGYPIDS-IVWERDNR  565 (816)
T ss_dssp             TCEEEEEEEEETTEEEEEEEEEEE---------CSSCEECC--C---CCEEEETTCCEEEECCEECSSEEE-EEEEETTE
T ss_pred             CCEEEEEEEEECCCeEEEEEEEEE---------ecCCeeEc--c---CCeEEecCCeEEEEEEecCCCCCE-EEEEECCe
Confidence            999999999999988888889998         66665421  1   334678999999999999988775 99999999


Q ss_pred             EEeeCCCCceEEeeceEEEeeec-CCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecC
Q psy3823         161 TISNNASAGRIITNQTLVLQSVT-RHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN  239 (365)
Q Consensus       161 ~l~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g  239 (365)
                      .+.... ......+++|.|.++. ..|+|.|+|.+.|..|...+..+.+.+.          .+|.+.........+..|
T Consensus       566 ~l~~~~-~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~----------~~p~~~~~~~~~~~~~~G  634 (816)
T 3dmk_A          566 ALPINR-KQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM----------VLPRIIPFAFEEGPAQVG  634 (816)
T ss_dssp             ESCCST-TEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEE----------CCCCCBCCCCCSSCEESS
T ss_pred             EcccCC-ceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEe----------cCCccccccccccccCCC
Confidence            886432 2233457789999998 5899999999999988766567778887          777665433333348899


Q ss_pred             ceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       240 ~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      +.+.|.|.+.+.+++..+.|+++|..................+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       635 ~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  714 (816)
T 3dmk_A          635 QYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP  714 (816)
T ss_dssp             CEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEE
T ss_pred             CeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeC
Confidence            99999999987665534999999875432222222233455678999999999999999999999999988888887644


Q ss_pred             c
Q psy3823         320 G  320 (365)
Q Consensus       320 ~  320 (365)
                      +
T Consensus       715 P  715 (816)
T 3dmk_A          715 P  715 (816)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=7.6e-32  Score=262.12  Aligned_cols=267  Identities=21%  Similarity=0.302  Sum_probs=205.0

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +.+.+.++|......+....+.+|+.++|.|.+.++|.+ .++|++++.. +...           ..|.|.+++.+|.|
T Consensus       373 ~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~i~W~~~g~~-~~~~-----------~~L~i~~~~~~d~G  439 (642)
T 1e07_A          373 VILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPA-QYSWLIDGNI-QQHT-----------QELFISNITEKNSG  439 (642)
T ss_pred             EEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCC-eEEEEECCEE-cCCC-----------ceEEEccCChhhCe
Confidence            345566666554444555677899999999998899999 9999999987 5421           26999999999999


Q ss_pred             EEEEEEEeCCCCCccc--EEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeE
Q psy3823          84 TLLCWARNEQGNQRTP--CTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGIT  161 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~~~--~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~  161 (365)
                      .|+|.|.|..|....+  +.+.|..  .    ..+|.+..  .   ....+.+|+.+.|.|.+.+ |.+. +.|+++|..
T Consensus       440 ~Y~C~a~n~~g~~~~s~~~~v~v~~--~----~~~p~i~~--~---~~~~v~~g~~v~l~C~~~~-~~~~-i~W~~~g~~  506 (642)
T 1e07_A          440 LYTCQANNSASGHSRTTVKTITVSA--E----LPKPSISS--N---NSKPVEDKDAVAFTCEPEA-QNTT-YLWWVNGQS  506 (642)
T ss_pred             EEEEEEEcCCCCCcccceEEEEEec--c----CCCceEec--C---CceeecCCCeEEEEEECCC-CCcE-EEEEECCEe
Confidence            9999999998876644  5555521  1    12444432  1   2345779999999999984 5555 999999998


Q ss_pred             EeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCce
Q psy3823         162 ISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQ  241 (365)
Q Consensus       162 l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~  241 (365)
                      +...........+.+|.|.++...|+|.|+|.+.|..|...+..+.|.|.          .+|...........+..|+.
T Consensus       507 l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~----------~~p~~~~~~~~~~~v~~g~~  576 (642)
T 1e07_A          507 LPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL----------YGPDTPIISPPDSSYLSGAN  576 (642)
T ss_pred             CCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEE----------eCCCcceecCCceeEEcCCc
Confidence            87544332333367899999999999999999999999776667889998          55543322222234889999


Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      +.|.|.+.|.|++. +.|+++|.....            ...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...
T Consensus       577 ~~l~C~~~g~p~p~-v~W~~~g~~i~~------------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v~  641 (642)
T 1e07_A          577 LNLSCHSASNPSPQ-YSWRINGIPQQH------------TQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS  641 (642)
T ss_pred             EEEEEEeccCCCCe-EEEEECCEECcc------------CceEEECcccccCCeEEEEEEEecccCcceeEEEEEEEc
Confidence            99999999999998 999998864321            135999999999999999999999999999998888654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=2e-32  Score=249.90  Aligned_cols=269  Identities=18%  Similarity=0.338  Sum_probs=194.2

Q ss_pred             ceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCceeEe-cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .....+.+|+.+.|.|.. .+.|.+ .+.|++++.. +......... .++   .|.|.+++.+|+|.|+|.|.|..+..
T Consensus       109 ~~~~~v~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~-~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~~~  183 (384)
T 3kld_A          109 RSTVSVRRGQGMVLLCGPPPHSGEL-SYAWIFNEYP-SYQDNRRFVSQETG---NLYIAKVEKSDVGNYTCVVTNTVTNH  183 (384)
T ss_dssp             CCCEEEEETCCEEECCCCCSEESCE-EEEEEETTEE-CCCSSSEEECTTTC---CEEESSCCGGGCEEEEEEEEETTTTE
T ss_pred             CCceeEEcCCCeEEecCCCCCCCCe-EEEEEECCCC-CEeeccEEEEcCCC---cEEEeecCHHHCceEEEEEecccccc
Confidence            344678899999999973 345666 9999999987 5433332222 233   69999999999999999999987654


Q ss_pred             c---ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeC-CeEEeeCCCCceEE
Q psy3823          97 R---TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHN-GITISNNASAGRII  172 (365)
Q Consensus        97 ~---~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~-~~~l~~~~~~~~~~  172 (365)
                      .   ....+.+......  ...+|.+.+...   ....+.+|+.+.|.|.+.|.|.|. +.|+++ +..+..  ......
T Consensus       184 ~~~~~~~~~~v~~~~~~--~~~~p~~~~~~~---~~~~~~~G~~v~l~C~~~g~P~p~-i~W~k~~~~~~~~--~~~~~~  255 (384)
T 3kld_A          184 KVLGPPTPLILRNDGVM--GEYEPKIEVQFP---ETVPAEKGTTVKLECFALGNPVPT-ILWRRADGKPIAR--KARRHK  255 (384)
T ss_dssp             EEECCCEEEEEEEEEEC--CCEEEEEEEECC---SEEEEETTSCEEEEEEEEEESCCE-EEEEETTCCCCCT--TCEECT
T ss_pred             eeeCCceEEEEccCCcc--cccCCceeecCC---CceEecCCCcEEEEEEEeecCCCc-EEEEeCCCccccc--cceecC
Confidence            3   2223333111000  012344444332   234578899999999999999887 999994 444432  111222


Q ss_pred             eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeC
Q psy3823         173 TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP  252 (365)
Q Consensus       173 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p  252 (365)
                      .++.|.|.+++.+|+|.|+|.|.|..|... ....|.|.          .+|.+....... .+..|+.+.|.|.+.|.|
T Consensus       256 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~v~----------~~P~~~~~~~~~-~v~~g~~v~l~C~~~g~P  323 (384)
T 3kld_A          256 SNGILEIPNFQQEDAGSYECVAENSRGKNV-AKGQLTFY----------AQPNWVQIINDI-HVAMEESVFWECKANGRP  323 (384)
T ss_dssp             TSCEEEECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE----------EEEEEEECCCCE-EECTTCCEEEECEEEEES
T ss_pred             CCcEEEECCCChhhCEEEEEEEEcCCCeEE-EEEEEEEe----------cCCccccCCCce-EecCCCCEEEEeECCccC
Confidence            356899999999999999999999998655 56678887          667665444333 388999999999999999


Q ss_pred             CCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         253 QAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       253 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      .|. +.|+++|..... ..+..+ .++   .|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       324 ~p~-i~W~k~g~~l~~-~~~~~~-~~~---~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          324 KPT-YRWLKNGDPLLT-RDRIQI-EQG---TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             CCE-EEEEETTEECCC-BTTEEE-ETT---EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             CCe-EEEEECCEECCC-CccEEE-eCC---EEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence            998 999999875432 222222 222   599999999999999999999999999999998863

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=100.00  E-value=5.4e-32  Score=241.76  Aligned_cols=272  Identities=14%  Similarity=0.144  Sum_probs=194.7

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCC---------CCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCC
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDA---------NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~---------~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      ++.|.......+.+.+|+.+.|.|.+.+         +|.+ .++|+|++.. +......  ..++   .|.|.+++.+|
T Consensus        28 ~~~c~~~~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~-~v~W~k~~~~-~~~~~~~--~~~~---~L~i~~v~~~D  100 (329)
T 3oq3_B           28 NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDN-VVNWEKIGKT-RRPLNRR--VKNG---DLWIANYTSND  100 (329)
T ss_dssp             CTTSEEEEEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTC-EEEEEECSSS-CEECSTT--EETT---EEEESSCCGGG
T ss_pred             CCCcccCCcceEEEECCCeEEEEccCCCCccccccccCCCC-eeEEEECCCC-ccccCce--eecc---eEEEcCCChHh
Confidence            3455554456778999999999999555         3557 9999999987 5432221  2334   89999999999


Q ss_pred             Ce-EEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecC-CCCeeEEEeCC
Q psy3823          82 YG-TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP-PYKKLIWTHNG  159 (365)
Q Consensus        82 ~G-~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~~i~W~~~~  159 (365)
                      +| .|+|.|.+..|.......+.|.        ..+|.+....    ....+.+|+.+.|.|.+.+.| .+. +.|++++
T Consensus       101 ~Gs~Y~C~a~n~~g~~~~~~~~~v~--------~~~p~~~~~~----~~~~~~~G~~v~L~C~~~g~p~~~~-i~W~k~~  167 (329)
T 3oq3_B          101 SHRRYLCTVTTKNGDCVQGIVRSHI--------RKPPSCIPET----YELGTHDKYGIDLYCGILYAKHYNN-ITWYKNN  167 (329)
T ss_dssp             GGCCEEEEEECTTSCEEEEEEEEEE--------CCCCSCEEEE----EETTSSTTTCEEEECCCCSCCCCCE-EEEEETT
T ss_pred             CCCcEEEEEEeCCCceeeEEEEEEE--------cCCCcEeccc----cceEEeCCCcEEEEeccCCCCCCce-EEEEECC
Confidence            99 9999999988765433333442        2344432222    113467899999999999988 566 9999999


Q ss_pred             eEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcC--CCCCC---cccEEEEEeeeeecccccCCCC----ceecCc
Q psy3823         160 ITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINS--QGEGG---STPFDLNINKMVNLIFNSIDEP----VCKQSQ  230 (365)
Q Consensus       160 ~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~---s~~~~l~v~~~~~~~~~~~~~p----~~~~~~  230 (365)
                      ..+.... ......+..|.|.+++.+|+|.|+|.+.|.  .|...   +..+.|.|.          .+|    .+. .+
T Consensus       168 ~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~----------~~~~~~~~~~-~~  235 (329)
T 3oq3_B          168 QELIIDG-TKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVI----------PSQDHRFKLI-LD  235 (329)
T ss_dssp             EECCCSS-SSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEE----------CCCCCCEEEE-CC
T ss_pred             ccCCCCC-ceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEE----------CCCCCCCcee-cC
Confidence            9885332 233344789999999999999999999987  55432   223667777          444    222 22


Q ss_pred             cceeeeecCceEEEEEEEeeeC---CC-ceeEEEeCCCCCCCCCCceeEe--eCC--CEEEEEEcCCCcccCe-EEEEEE
Q psy3823         231 QRIYGALRNEQVLVSCTVDANP---QA-QYFTWAFNNSDTAPRPLTSYSI--QDG--STSVARYTPTSELEYG-TLLCWA  301 (365)
Q Consensus       231 ~~~~~~~~g~~~~l~C~~~~~p---~~-~~~~W~~~~~~~~~~~~~~~~~--~~~--~~s~l~i~~v~~~d~G-~Y~C~a  301 (365)
                       ....+..|+.+.|.|.+.+.|   .+ . +.|+++|.............  ..+  ..+.|.|.+++.+|+| .|+|.|
T Consensus       236 -~~~~v~~G~~~~l~C~~~g~p~~~~~i~-v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a  313 (329)
T 3oq3_B          236 -PKINVTIGEPANITCTAVSTSLLVDDVL-IDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRG  313 (329)
T ss_dssp             -SEEEECTTSCEEEEEEEEETTCCTTCCE-EEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEE
T ss_pred             -CeeEEecCCCEEEEEEEEECCCCCCCcE-EEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEE
Confidence             224488999999999999998   55 5 89999987532222221111  112  3567999999999999 999999


Q ss_pred             EcCCccceecEEEEE
Q psy3823         302 RNEQGSQRTPCTFHV  316 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v  316 (365)
                      .|..|..+.++.|.|
T Consensus       314 ~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          314 HNYYFDKTLTTTVVL  328 (329)
T ss_dssp             ECSSCEEEEEEEEEE
T ss_pred             EecCCceEEEEEEEe
Confidence            999999988888766

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=1.1e-32  Score=252.88  Aligned_cols=290  Identities=15%  Similarity=0.251  Sum_probs=208.5

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCC-
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE-   81 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d-   81 (365)
                      +.+.+.+.|...........+.+|+.++|.|.+ .+.|.+ .+.|++++...+..........++   .|.|.+++..| 
T Consensus       108 ~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~---~l~i~~v~~~d~  183 (404)
T 3p3y_A          108 IRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSP-VIFWMSSSMEPITQDKRVSQGHNG---DLYFSNVMLQDM  183 (404)
T ss_dssp             EEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCC-EEEEECTTSCBCCCCSSEEECTTS---CEEESSCCSGGG
T ss_pred             EEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCC-eEEEeCCCccccCCCCcEEEcCCC---cEEEEeeeeccC
Confidence            345566666555444455778999999999996 788888 999999986524443333333445   69999999999 


Q ss_pred             CeEEEEEEEeCCCCCc---ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeC
Q psy3823          82 YGTLLCWARNEQGNQR---TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHN  158 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~~~---~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~  158 (365)
                      +|.|+|.+.+..+...   ..+.+.|.......  ..+|.+.. +........+.+|+.+.|.|.+.+.|.+. +.|+++
T Consensus       184 ~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~--~~~p~~~~-~~~~~~~~~~~~G~~v~l~C~~~g~p~~~-v~W~~~  259 (404)
T 3p3y_A          184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA--ERTPSFMY-PQGTASSQMVLRGMDLLLECIASGVPTPD-IAWYKK  259 (404)
T ss_dssp             SSCBEEEEECTTTCCEEECCCBCEEEECCSCCC--CCCCCBSS-SCSSEEEEEEETTSCEEEECCBCCSSCCE-EEEEET
T ss_pred             CcceEEEEEeccccceeccCceeEEEeccCCcc--ccCCcccc-ccCCCCCceEecCCCEEEEEEECCCCCCc-EEEEEC
Confidence            5999999998877542   44566663211100  11222111 00000123578999999999999988886 999999


Q ss_pred             CeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeec
Q psy3823         159 GITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR  238 (365)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~  238 (365)
                      |..+..... .....+..|.|.++..+|+|.|+|.+.|..|... ..+.|.|.          .+|.+...+.... +..
T Consensus       260 ~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~----------~~p~~~~~~~~~~-v~~  326 (404)
T 3p3y_A          260 GGDLPSDKA-KFENFNKALRITNVSEEDSGEYFCLASNKMGSIR-HTISVRVK----------AAPYWLDEPKNLI-LAP  326 (404)
T ss_dssp             TBCCCTTTE-EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEE-EEEEEEEE----------EEEEEEECCCCEE-ECT
T ss_pred             CEECCCCcc-cccccCceEEEccCCHhHCEEEEEEEEeCCCcEE-EEEEEEEe----------CCCeeeccCCcce-eec
Confidence            988754221 2223367899999999999999999999988644 67888888          6776665444433 889


Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      |+.+.|.|.+.|.|.+. +.|+++|...............+.  .|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       327 g~~~~l~C~~~g~p~p~-v~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          327 GEDGRLVCRANGNPKPT-VQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             TCCEEEECEEEEESCCE-EEEEETTEEGGGSCCCTTEEEETT--EEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCcEEEEEEccccCCCc-eEEEECCEecCCCCCCceEEecCC--EEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            99999999999999998 999998875433222111222222  59999999999999999999999999998888875

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=100.00  E-value=4.4e-32  Score=240.12  Aligned_cols=283  Identities=11%  Similarity=0.114  Sum_probs=191.9

Q ss_pred             CceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      +.....+.+|+.+.|.|. ..+.|.+ .++|+|++.. +...........+....|.|.+++.+|+|.|+|.+.+..+..
T Consensus         7 ~~~~~~v~eg~~v~l~~~~~~~~p~~-~v~W~k~~~~-i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~   84 (312)
T 2y23_A            7 KEVVVNVDDDGVISLNFECDKMTPKS-EFSWSKDYVS-TEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIA   84 (312)
T ss_dssp             CCCEEEECTTCCEEEEEECSSCCTTC-CEEEEETTEE-CTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCC
T ss_pred             cceeEEEecCCeEEEEEEEeCCCCCc-EEEEEECCEE-CCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcE
Confidence            345677899999999999 4567888 9999999998 765555444455556699999999999999999999988744


Q ss_pred             cccEEEEEEeccccCC---CCCCCeEEEEcCCccCccceecCCcEEEEEEEE-ecCCCCeeEEEeCCeEEeeCCCCceEE
Q psy3823          97 RTPCTFHVVKAGECEH---PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ-ANPPYKKLIWTHNGITISNNASAGRII  172 (365)
Q Consensus        97 ~~~~~l~V~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~~~~l~~~~~~~~~~  172 (365)
                       ..+.+.|........   ...+|.+...+.   ....+.+|+.+.|.|.+. +.|.+. +.|++++..+..........
T Consensus        85 -~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~---~~~~v~~G~~v~l~C~~~~~~p~~~-v~W~~~~~~i~~~~~~~~~~  159 (312)
T 2y23_A           85 -SSYLIDEEELKRLLALSHEHKFPTVPVKSE---LAVEILEKGQVRFWMQAEKLSGNAK-VNYIFNEKEIFEGPKYKMHI  159 (312)
T ss_dssp             -EEEEECHHHHHHHHHHHHHHHSCBCCEEEE---EEEEECSSSCEEEEEEESCCCSSCE-EEEEETTEEECSSSSCEEEE
T ss_pred             -EEEEEEEeeeeeeecccccCCCCccccccC---CceEEeeCCCEEEEEEEEeCCCCCE-EEEEECCEECeeCCcEEEEE
Confidence             355555510000000   000343333221   134688999999999999 777666 99999999987643332222


Q ss_pred             e----eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeee------c-----ccccCCCCceecCccceeeee
Q psy3823         173 T----NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVN------L-----IFNSIDEPVCKQSQQRIYGAL  237 (365)
Q Consensus       173 ~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~------~-----~~~~~~~p~~~~~~~~~~~~~  237 (365)
                      .    ..+|.|.+++.+|+|.|+|.+.+....   ....+.+.....      +     .+....+|.+.....  ..+.
T Consensus       160 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~v~  234 (312)
T 2y23_A          160 DRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT---NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS--WEVT  234 (312)
T ss_dssp             ETTTTEEEEEESCCCGGGCEEEEEEEESSSCE---EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE--EEEE
T ss_pred             ccCCCEEEEEEccCCcccCEeEEEEEEeCCce---EEEEEEEcchhhhhhcccccccccchhhccCCceeecce--EEEe
Confidence            1    234999999999999999999754322   222333310000      0     000002244332222  3488


Q ss_pred             cCceEEEEEEEeeeCCC-ceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         238 RNEQVLVSCTVDANPQA-QYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      .|+.+.|.|.+.+.|++ . +.|+++|..... .....+  .+....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus       235 ~G~~~~l~C~~~~~p~~~~-v~W~~~g~~~~~-~~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          235 GECNVLLKCKVANIKKETH-IVWYKDEREISV-DEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             TTTEEEEEEEEESCCSSCE-EEEEETTEEEEE-ECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             CCCEEEEEEEEcCCCCCCE-EEEeeCCEECCC-CCcEEE--ECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            99999999999999888 6 999998764321 111211  134568999999999999999999999999988887765

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=100.00  E-value=2.3e-33  Score=249.00  Aligned_cols=277  Identities=17%  Similarity=0.219  Sum_probs=196.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC-CcceEEEEeCCCcCCCCC--Cce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP-QAQYFTWAFNNSGTAPRP--LTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p-~~~~v~W~~~~~~~l~~~--~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ...+.+.+|+.+.|.|.+.+.| .+ .++|+|++.. +...  ... ....++   .|.|.+++.+|+|.|+|.|.+..+
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g   86 (315)
T 1itb_B           12 KIILVSSANEIDVRPCPLNPNEHKG-TITWYKDDSK-TPVSTEQASRIHQHKE---KLWFVPAKVEDSGHYYCVVRNSSY   86 (315)
T ss_dssp             CCCCEEETTSCCCCBCCCCSCCCSS-CCCEECTTSC-SCSCCCTTSSSEECSS---BEECTTCCGGGCSCCEECCCSSSC
T ss_pred             ceEEEEcCCCcEEEEeeccCcCCCc-eEEEEeCCCc-CccccccCCcEeccCC---eEEECCCChhhCEEEEEEEeCCce
Confidence            3467789999999999977777 66 9999999875 3221  111 122333   799999999999999999998887


Q ss_pred             CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE------EecCCCCeeEEEeCCeEEeeCCCC
Q psy3823          95 NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI------QANPPYKKLIWTHNGITISNNASA  168 (365)
Q Consensus        95 ~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~------~~~p~~~~i~W~~~~~~l~~~~~~  168 (365)
                      .....+.+.+.        ..+|.+...+.. .....+.+|+++.|.|.+      .+.|.+. +.|++++..+.... .
T Consensus        87 ~~~~~~~v~v~--------~~~p~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~-i~W~k~~~~l~~~~-~  155 (315)
T 1itb_B           87 CLRIKISAKFV--------ENEPNLCYNAQA-IFKQKLPVAGDGGLVCPYMEFFKNENNELPK-LQWYKDCKPLLLDN-I  155 (315)
T ss_dssp             CCCEECCCEEE--------CCCTTSSSCGGG-EEEEEEETTSCEEEECSSCTTTCTTTTCCCC-CEEEETTEECCCCS-S
T ss_pred             EEEEEEEEEEe--------CCCCCccccccc-ccceEEecCCCeEEEEecccccccCCCCCCE-EEEEECCEECCCcc-c
Confidence            76655555542        123322111100 012357789999999998      6778777 99999999986532 3


Q ss_pred             ceEEeeceEEEeeecCCCCeEEEEEEE-cCCCCCCc--ccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEE
Q psy3823         169 GRIITNQTLVLQSVTRHSGGLYACSAI-NSQGEGGS--TPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVS  245 (365)
Q Consensus       169 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~s--~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~  245 (365)
                      .....+..|.|.+++..|+|.|+|.+. |..|...+  ..+.+.+...     ....+|.+.........+..|+.+.|.
T Consensus       156 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~-----~~~~~P~~~~~~~~~~~~~~g~~v~l~  230 (315)
T 1itb_B          156 HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEE-----NKPTRPVIVSPANETMEVDLGSQIQLI  230 (315)
T ss_dssp             SEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECC-----CCCCCCEECSCCSEEEECCSSSCEEEE
T ss_pred             eEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecC-----CCCCCCEEecCCCCcEEEeCCCcEEEE
Confidence            345557899999999999999999999 77775532  2333333200     011456665544433448899999999


Q ss_pred             EEEeeeCCCceeEEEeCCCCCCCCCCc----eeEeeC-------CCEEEEEEcCCCccc-CeEEEEEEEcCCccceecEE
Q psy3823         246 CTVDANPQAQYFTWAFNNSDTAPRPLT----SYSIQD-------GSTSVARYTPTSELE-YGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       246 C~~~~~p~~~~~~W~~~~~~~~~~~~~----~~~~~~-------~~~s~l~i~~v~~~d-~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      |.+.|.|.|. +.|+++|.........    ......       ...+.|.|.+++.+| +|.|+|.|.|..|....++.
T Consensus       231 C~~~g~P~p~-i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~  309 (315)
T 1itb_B          231 CNVTGQLSDI-AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQ  309 (315)
T ss_dssp             EEEEECTTSE-EEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEE
T ss_pred             EEEecCCCCe-eEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEE
Confidence            9999999998 9999998754432211    111111       124579999999999 99999999999999998888


Q ss_pred             EEEE
Q psy3823         314 FHVV  317 (365)
Q Consensus       314 l~v~  317 (365)
                      |.|.
T Consensus       310 l~v~  313 (315)
T 1itb_B          310 LIYP  313 (315)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            8764

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=1e-31  Score=245.18  Aligned_cols=284  Identities=14%  Similarity=0.187  Sum_probs=196.2

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEe-CCCcCCCCCCce-eEecCCeEEEEEEccCCCCC------
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF-NNSGTAPRPLTS-YSIQDGSTSVARYTPTSELE------   81 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~-~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d------   81 (365)
                      .+|.+....+..+.+.+|+.++|.|.+.+.|.+ .++|++ ++.. +...... ....++   .|.|.+++.+|      
T Consensus         2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p-~v~W~k~~g~~-~~~~~~~~~~~~~~---~L~i~~~~~~d~~~~~d   76 (388)
T 2v5m_A            2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMP-EIIWIRSDGTA-VGDVPGLRQISSDG---KLVFPPFRAEDYRQEVH   76 (388)
T ss_dssp             EEEEEEECCCSEEEEETTTCEEEECEEEEESCC-EEEEEETTSCB-CCCBTTTBEECSTT---EEEECCCCGGGCCHHHH
T ss_pred             CCCchhhCCCceEEEEcCccEEEEEECCCCCCC-EEEEEcCCCCc-cccCCCceEEcCCc---eEEecccChhhcccccc
Confidence            466666655556778899999999998888999 999999 6666 5543322 223444   79999999887      


Q ss_pred             CeEEEEEEEeCCCCC-cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC--CCeeEEEeC
Q psy3823          82 YGTLLCWARNEQGNQ-RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP--YKKLIWTHN  158 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~~i~W~~~  158 (365)
                      +|.|+|.|.|..+.. ...+.|.+         ..+|.+...+    ....+.+|+.+.|.|.+.+.++  ...+.|+++
T Consensus        77 ~G~Y~C~a~n~~g~~~s~~~~v~v---------~~~p~~~~~~----~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~  143 (388)
T 2v5m_A           77 AQVYACLARNQFGSIISRDVHVRA---------VVAQYYEADV----NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD  143 (388)
T ss_dssp             EEEEEEEEEETTEEEECCCEEEEE---------ECCCCCCCBC----CCEEEETTSCEEECCBCCTTTTTTEEEEEEEET
T ss_pred             CceEEEEEEccCCeEEecceEEEE---------ccccccccCc----cceeeecCCcEEEEEECcCCCCCCcceEEEEeC
Confidence            999999999988764 36677777         3344433222    3346789999999999987653  245999999


Q ss_pred             CeEEeeCC----CCceEEeeceEEEeeecCCCC-eEEEEEEEcCCCCCCc---ccEEEEEeeeeecccccCCCCceecCc
Q psy3823         159 GITISNNA----SAGRIITNQTLVLQSVTRHSG-GLYACSAINSQGEGGS---TPFDLNINKMVNLIFNSIDEPVCKQSQ  230 (365)
Q Consensus       159 ~~~l~~~~----~~~~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~s---~~~~l~v~~~~~~~~~~~~~p~~~~~~  230 (365)
                      +..+....    .......++.|.|.+++.+|+ |.|+|.+.|..+....   ....|.|..+..     ...|.+....
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~-----~~~p~~~~~~  218 (388)
T 2v5m_A          144 EEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS-----SSAPRTPALV  218 (388)
T ss_dssp             TCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCS-----CEEEECCSSC
T ss_pred             CCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCc-----CCCCcCcccc
Confidence            88764321    122333467899999999999 9999999998643221   123455551100     0012111111


Q ss_pred             cceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC----CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         231 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR----PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       231 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~----~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      .....+..|+.+.|.|.+.+.|.+. +.|++++......    ........+   ..|.|.+++.+|+|.|+|.|.|..|
T Consensus       219 ~~~~~v~~G~~v~l~C~~~g~p~p~-v~W~~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g  294 (388)
T 2v5m_A          219 QKPLELMVAHTISLLCPAQGFPAPS-FRWYKFIEGTTRKQAVVLNDRVKQVS---GTLIIKDAVVEDSGKYLCVVNNSVG  294 (388)
T ss_dssp             CCCEEEETTSCEEECCCCEEESCCE-EEEEEECTTSSCEEECCCSSSEEEET---TEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CCceEEeeCCcEEEEEECCCCCCCE-EEEEecCCCCcccccccccCceeccc---CEEEECcCCHHHCeEEEEEEecCCC
Confidence            1222378899999999999999998 9999986532211    011111112   2599999999999999999999999


Q ss_pred             cceecEEEEEEcCc
Q psy3823         307 SQRTPCTFHVVKAG  320 (365)
Q Consensus       307 ~~~~~~~l~v~~~~  320 (365)
                      ..+..+.|.|..++
T Consensus       295 ~~~~~~~l~V~~~p  308 (388)
T 2v5m_A          295 GESVETVLTVTAPL  308 (388)
T ss_dssp             EEEEEEEEEEEEEE
T ss_pred             ceeEEEEEEEeCCC
Confidence            98888888876543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=6e-32  Score=246.32  Aligned_cols=278  Identities=16%  Similarity=0.223  Sum_probs=201.3

Q ss_pred             ecccCCeEeeCCceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCC--ceeEecCCeEEEEEEccCCCCCCe
Q psy3823           7 NSTDEPVCKQSQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPL--TSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus         7 ~~~~~p~~~~~~~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      .+.+.|...........+.+|+.+.|.|. ..+.|.+ .+.|++++.. +....  .......  ...|.|.+++.+|.|
T Consensus        96 ~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~-~i~W~~~~~~-~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G  171 (382)
T 1cs6_A           96 RFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPAL-SYRWLLNEFP-NFIPADGRRFVSQT--TGNLYIAKTEASDLG  171 (382)
T ss_dssp             EEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCC-EEEEEESSTT-CBCCCCSSEEECTT--TCCEEESSCCGGGCE
T ss_pred             EeeccccccccCCCceEEecCCcEEEEeCCCCCCCCc-EEEEEECCCc-cccccCceEEEecC--ceEEEEEeeCcccCe
Confidence            33343433333445677899999999999 4566888 9999999876 43221  1121111  127999999999999


Q ss_pred             EEEEEEEeCCCCCc-----ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeC
Q psy3823          84 TLLCWARNEQGNQR-----TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHN  158 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~-----~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~  158 (365)
                      .|+|.+.+..+...     ..+.|.+.....   ...+|.+.....   ....+.+|+.+.|.|.+.+.|.+. +.|+++
T Consensus       172 ~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~---~~~~P~~~~~~~---~~~~~~~G~~v~l~C~~~g~p~~~-i~W~~~  244 (382)
T 1cs6_A          172 NYSCFATSHIDFITKSVFSKFSQLSLAAEDA---RQYAPSIKAKFP---ADTYALTGQMVTLECFAFGNPVPQ-IKWRKL  244 (382)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEESCCC---CCEEEEEEECCC---SEEEEETTCCEEEECEEEEESCCE-EEEEEC
T ss_pred             eEEEEEEEccccccceeEccceeeccchhhc---ccCCCceeccCC---CceEEeCCCeEEEEEEEccCCCCE-EEEEEC
Confidence            99999998775322     345555521100   022455444322   234688999999999999988777 999998


Q ss_pred             CeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeec
Q psy3823         159 GITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR  238 (365)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~  238 (365)
                      +..+..    ........|.|.+++..|+|.|+|.+.|..|... ..+.|.|.          .+|.+....... .+..
T Consensus       245 ~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~----------~~p~~~~~~~~~-~~~~  308 (382)
T 1cs6_A          245 DGSQTS----KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDT-YQGRIIIH----------AQPDWLDVITDT-EADI  308 (382)
T ss_dssp             CSCCSC----CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE----------EEEEEEECCCCE-EEET
T ss_pred             Cccccc----EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEE-EEEEEEEe----------cCCCcccCCCcc-EEcC
Confidence            876542    1223357899999999999999999999988644 66788888          667666544333 3889


Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      |+.+.|.|.+.|.|.+. +.|+++|...... .+... .++   .|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       309 g~~~~l~C~~~g~p~p~-v~W~~~g~~~~~~-~~~~~-~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          309 GSDLRWSCVASGKPRPA-VRWLRDGQPLASQ-NRIEV-SGG---ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             TCCEEEECEEEEESCCE-EEEEETTEECCCC-SSEEE-ETT---EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCeEEEEEEeeeecCCE-EEEEECCEECCCC-ceEEE-ECC---EEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            99999999999999998 9999998754322 22222 222   59999999999999999999999999999999886

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=5.4e-31  Score=256.14  Aligned_cols=263  Identities=21%  Similarity=0.258  Sum_probs=195.4

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +.+.+.+.|......+....+.+|+.++|.|.+.++|.+ .++|++++.. +..        .   ..|.|.+++.+|+|
T Consensus       195 ~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~-~i~W~~~g~~-i~~--------~---~~L~i~~~~~~d~G  261 (642)
T 1e07_A          195 VILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPA-QYSWFVNGTF-QQS--------T---QELFIPNITVNNSG  261 (642)
T ss_pred             EEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCc-EEEEEECCeE-ccc--------C---CceEEecccccCCe
Confidence            344555555443334445567899999999999899999 9999999987 532        1   26899999999999


Q ss_pred             EEEEEEEeCCCCCc--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeE
Q psy3823          84 TLLCWARNEQGNQR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGIT  161 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~  161 (365)
                      .|+|.|.|..+...  ..+.|.|...      ..+|.+..  .   ....+..|+.+.|.|.+.+.| +. +.|+++|..
T Consensus       262 ~Y~C~a~n~~g~~~~s~~~~v~v~~~------~~~p~i~~--~---~~~~~~~g~~v~l~C~~~~~p-~~-v~W~~~g~~  328 (642)
T 1e07_A          262 SYTCQAHNSDTGLNRTTVTTITVYAE------PPKPFITS--N---NSNPVEDEDAVALTCEPEIQN-TT-YLWWVNNQS  328 (642)
T ss_pred             EEEEEEEeCCCceEEeeeEEEEEEcc------CCCCEEEc--C---CceeEecCCcEEEEEECCCCC-cc-EEEEECCcc
Confidence            99999999887654  4456666211      12344332  1   223455678899999998875 44 999999988


Q ss_pred             EeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCce
Q psy3823         162 ISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQ  241 (365)
Q Consensus       162 l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~  241 (365)
                      +...........+..|.|.++..+|+|.|+|.+.|..|...+..+.|.|.          .+|...........+..|+.
T Consensus       329 l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~----------~~p~~~~~~~~~~~~~~g~~  398 (642)
T 1e07_A          329 LPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVL----------YGPDDPTISPSYTYYRPGVN  398 (642)
T ss_pred             CCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEE----------cCCCCCeecCCceEecCCCc
Confidence            86543332333467899999999999999999999998766677888888          66654322222233789999


Q ss_pred             EEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         242 VLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       242 ~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +.|.|.+.+.|.+. +.|+++|.....            ...|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus       399 ~~l~C~~~g~p~~~-i~W~~~g~~~~~------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~  459 (642)
T 1e07_A          399 LSLSCHAASNPPAQ-YSWLIDGNIQQH------------TQELFISNITEKNSGLYTCQANNSASGHSRTTVKT  459 (642)
T ss_pred             EEEEEEcCccCCCe-EEEEECCEEcCC------------CceEEEccCChhhCeEEEEEEEcCCCCCcccceEE
Confidence            99999999999998 999998864311            23499999999999999999999999776554433

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=4.9e-32  Score=247.27  Aligned_cols=270  Identities=17%  Similarity=0.245  Sum_probs=180.4

Q ss_pred             ecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccC-CCCCCeEEEEEEEeCCCCCc-ccEE
Q psy3823          25 LRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPT-SELEYGTLLCWARNEQGNQR-TPCT  101 (365)
Q Consensus        25 ~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~-~~~d~G~Y~C~a~~~~~~~~-~~~~  101 (365)
                      .+|+.+.|.|.+.++|.+ .++|+|++.. +...... ....++   .|.|.+. +.+|+|.|+|.|.|..|... ....
T Consensus        21 ~eg~~v~L~C~~~g~P~p-~i~W~k~g~~-l~~~~~~~~~~~~g---~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~   95 (384)
T 3kld_A           21 SEEKKVKLSCEVKGNPKP-HIRWKLNGTD-VDIGMDFRYSVVDG---SLLINNPNKTQDAGTYQCIATNSFGTIVSREAK   95 (384)
T ss_dssp             CSCSEEEECCEEEEESCC-EEEEEETTEE-CCC----CEEEETT---EEEEESCCHHHHCEEEEEEEEETTEEEECCCEE
T ss_pred             CCCCeEEEEeEecCCCCC-EEEEEECCEE-CcCCCCccEEEECC---EEEEcCCCCcccCEEEEEEEEcCcccEEecceE
Confidence            589999999998899999 9999999998 6543322 222344   4666655 78899999999999888643 4566


Q ss_pred             EEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE-ecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEe
Q psy3823         102 FHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ-ANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQ  180 (365)
Q Consensus       102 l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~  180 (365)
                      |.+..         .+.+.....   ....+.+|+.+.|.|... +.+.+. +.|++++.++...........++.|.|.
T Consensus        96 l~v~~---------~~~~~~~~~---~~~~v~~G~~~~l~C~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~L~I~  162 (384)
T 3kld_A           96 LQFAY---------LENFKTRTR---STVSVRRGQGMVLLCGPPPHSGELS-YAWIFNEYPSYQDNRRFVSQETGNLYIA  162 (384)
T ss_dssp             EEEEE---------ECCCSCCCC---CCEEEEETCCEEECCCCCSEESCEE-EEEEETTEECCCSSSEEECTTTCCEEES
T ss_pred             EEEec---------ccccccCCC---CceeEEcCCCeEEecCCCCCCCCeE-EEEEECCCCCEeeccEEEEcCCCcEEEe
Confidence            66521         111111111   224578899999999765 334444 9999999887532222122235689999


Q ss_pred             eecCCCCeEEEEEEEcCCCCCC--cccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeE
Q psy3823         181 SVTRHSGGLYACSAINSQGEGG--STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT  258 (365)
Q Consensus       181 ~~~~~d~G~Y~C~~~~~~~~~~--s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~  258 (365)
                      ++...|+|.|+|.+.|..+...  .....+.+.....   .....|.+.........+..|+.+.|.|.+.|.|.|. +.
T Consensus       163 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~---~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~-i~  238 (384)
T 3kld_A          163 KVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV---MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPT-IL  238 (384)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEE---CCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCE-EE
T ss_pred             ecCHHHCceEEEEEecccccceeeCCceEEEEccCCc---ccccCCceeecCCCceEecCCCcEEEEEEEeecCCCc-EE
Confidence            9999999999999999876421  1112222220000   0002233332222334478999999999999999998 99


Q ss_pred             EEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCc
Q psy3823         259 WAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       259 W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  320 (365)
                      |++++......  .....  .....|.|.+++.+|+|.|+|.|.|..|.......|.|..++
T Consensus       239 W~k~~~~~~~~--~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P  296 (384)
T 3kld_A          239 WRRADGKPIAR--KARRH--KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP  296 (384)
T ss_dssp             EEETTCCCCCT--TCEEC--TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred             EEeCCCccccc--cceec--CCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCC
Confidence            99965422221  11111  122359999999999999999999999998888888776443

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.6e-31  Score=243.06  Aligned_cols=270  Identities=17%  Similarity=0.246  Sum_probs=198.4

Q ss_pred             ceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCC--CC----CCceeEecCCeEEEEEEccCCCCCCe---EEEEE
Q psy3823          19 QRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTA--PR----PLTSYSIQDGSTSVARYTPTSELEYG---TLLCW   88 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l--~~----~~~~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~   88 (365)
                      +....+.+|+.+.|.|. ..+.|.+ .++|++++....  ..    ........++   .|.|.+++.+|.|   .|+|.
T Consensus       107 ~~~~~~~~G~~v~l~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~~~~Y~C~  182 (395)
T 1bih_A          107 THEKTPIEGRPFQLDCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYVCT  182 (395)
T ss_dssp             EEEECCBTTEEEEECCCCCEEESCC-EEEEEEEETTSCGGGCCCCCCTTEEECTTS---CEEEEEECGGGCCSSEEEEEE
T ss_pred             CcceeeeeCCcEEEEecCCCCCCCC-eEEEEecCCCcCcccccccccccEEEcCCC---cEEEEEEeeccCCCceEEEEE
Confidence            34566789999999999 4788998 999999862101  11    1222223344   6899999999999   99999


Q ss_pred             EEeCCCCCcccEEEEEEe-ccccCCC---CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEee
Q psy3823          89 ARNEQGNQRTPCTFHVVK-AGECEHP---VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN  164 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V~~-~~~~~~~---~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~  164 (365)
                      +.+..+............ ......+   ..+|.+  .+    ....+.+|+.+.|.|.+.|.|.+. +.|+++|..+..
T Consensus       183 a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~----~~~~~~~G~~v~l~C~~~g~p~~~-i~W~~~g~~~~~  255 (395)
T 1bih_A          183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VS----KDMMAKAGDVTMIYCMYGSNPMGY-PNYFKNGKDVNG  255 (395)
T ss_dssp             EECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--EC----CSEEEETTSCEEEEEEEECSSCCC-CEEEETTEECCC
T ss_pred             EEecccceEEEeeeEEecccccccccccCCcCcee--cC----CceEEECCCcEEEEEEeccCCCCe-EEEEECCEEcCC
Confidence            999888765333322211 0000000   012222  11    345688999999999999998887 999999998865


Q ss_pred             CCCCceEEe----eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCc
Q psy3823         165 NASAGRIIT----NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNE  240 (365)
Q Consensus       165 ~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~  240 (365)
                      .........    ...|.|.++..+|+|.|+|.+.|..|...+..+.|.|.          .+|.+...+.....+..|+
T Consensus       256 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~----------~~P~~~~~~~~~~~~~~g~  325 (395)
T 1bih_A          256 NPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV----------SAPKYEQKPEKVIVVKQGQ  325 (395)
T ss_dssp             CTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE----------EEEEEEECCCSEEEECTTS
T ss_pred             CCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEE----------cCCccccCCCcceEecCCC
Confidence            433333222    23799999999999999999999998876558889998          7787765554434488999


Q ss_pred             eEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         241 QVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       241 ~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      .+.|.|.+.|.|.+. +.|+++|.....  .+... .++   .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       326 ~~~l~C~~~g~p~p~-v~W~~~g~~~~~--~~~~~-~~~---~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          326 DVTIPCKVTGLPAPN-VVWSHNAKPLSG--GRATV-TDS---GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             CEEEECEEEEESCCC-CEEEETTEECCS--SSEEE-ETT---EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEEEECcccCCe-eEEEECCEECCC--CceEE-ECC---EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            999999999999998 999999875432  22222 222   6999999999999999999999999998888876

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=100.00  E-value=5.5e-31  Score=230.57  Aligned_cols=275  Identities=15%  Similarity=0.156  Sum_probs=191.1

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      |......+..+.+.+|+.++|.|.+.+     .+.|++++.. ..     ..........|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~-----~v~W~~~~~~-~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   72 (289)
T 3ejj_X            4 APVIEPSGPELVVEPGETVTLRCVSNG-----SVEWDGPISP-YW-----TLDPESPGSTLTTRNATFKNTGTYRCTELE   72 (289)
T ss_dssp             CCEEESCSSEEEECTTCCEEEEEECSS-----CCEEECSCSS-SS-----EECCCSSCCEEEESSCCGGGCEEEEEECCC
T ss_pred             CcEecCCCceEEECCCCCEEEEEEeCC-----cEEEccCCCc-eE-----EEeccCCccEEEEeeeccccCEEEEEEEec
Confidence            334445566778899999999999765     5999987654 21     111122234899999999999999999998


Q ss_pred             CCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe-CCeEEeeCCCCce
Q psy3823          92 EQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGR  170 (365)
Q Consensus        92 ~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~-~~~~l~~~~~~~~  170 (365)
                      ..+.....+.|.|         ..+|.......   ....+.+|+.+.|.|.+.+.+.+..+.|++ ++..+.. .....
T Consensus        73 ~~~~~~~~~~l~V---------~~~~~~~~~~~---~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~  139 (289)
T 3ejj_X           73 DPMAGSTTIHLYV---------KDPAHSWNLLA---QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR-KTVYF  139 (289)
T ss_dssp             -----CEEEEEEE---------CCSSCSEEESC---SEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCT-TCCEE
T ss_pred             cCCcceeEEEEEE---------eCCCcceeccc---ceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCC-CccEE
Confidence            8887778888988         44444222221   335688999999999999877665599986 5655543 22223


Q ss_pred             EEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee
Q psy3823         171 IITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA  250 (365)
Q Consensus       171 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~  250 (365)
                      ...+..|.|.+++..|+|.|+|.+.+......+..+.|.|...      ...+|.+...+.... +..|+.+.|.|.+.+
T Consensus       140 ~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~------~~~~p~i~~~~~~~~-~~~g~~~~l~C~~~~  212 (289)
T 3ejj_X          140 FSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV------HPEPPQIKLEPSKLV-RIRGEAAQIVCSATN  212 (289)
T ss_dssp             EETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESS------CCCCCEEEEESSSEE-CCSSSCEEEEEEEEE
T ss_pred             ECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEEC------CCCCCeEEecCCceE-EEeCCcEEEEEEeCC
Confidence            3446789999999999999999999544333346677887610      013455554443332 678999999999998


Q ss_pred             -eCCCceeEEEeCCCCCCCCCCceeEee--CCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         251 -NPQAQYFTWAFNNSDTAPRPLTSYSIQ--DGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       251 -~p~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                       .|.+. +.|++++...... .......  ....+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.+..+
T Consensus       213 ~~p~~~-i~W~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~  282 (289)
T 3ejj_X          213 AEVGFN-VILKRGDTKLEIP-LNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES  282 (289)
T ss_dssp             SSSCCE-EEEEETTEECCCC-EEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC--
T ss_pred             CCCceE-EEEEECCEEeecc-CCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEec
Confidence             68887 9999987643221 1111101  112457999999999999999999999999999999887654

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=3.8e-31  Score=243.82  Aligned_cols=263  Identities=14%  Similarity=0.151  Sum_probs=176.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      +....|.+|+++.|.|.+.+.|.+ .|.|++++.. +..... ....+.....|.|.+++.+|+|.|+|.|.|..+....
T Consensus        55 ~~~v~V~~G~~v~L~C~v~g~P~p-~i~W~~~~~~-l~~~~~-~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~  131 (423)
T 3qs7_E           55 AAAVEVDVSASITLQVLVDAPGNI-SCLWVFKHSS-LNCQPH-FDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI  131 (423)
T ss_dssp             -CEEEECSSCCEEEEEECSCCSSC-EEEEEETTEE-ECCCCB-C-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEE
T ss_pred             cccEEEecCCcEEEEEEEEcCCCC-eEEEEECCCc-cCccce-eccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEE
Confidence            347789999999999998888998 9999999876 543222 1112223347999999999999999999999888778


Q ss_pred             cEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC--CceEEeece
Q psy3823          99 PCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS--AGRIITNQT  176 (365)
Q Consensus        99 ~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~--~~~~~~~~~  176 (365)
                      .+.|.|         ..+|.+...     .......|+.+.|.|.+.|+|.|. |.|++++..+.....  .........
T Consensus       132 ~~~l~V---------~~~p~~~~~-----~p~~~~~~~~~~L~C~a~G~P~P~-i~W~k~~~~~~~~~~~~~~~~~~~~~  196 (423)
T 3qs7_E          132 LFTVSI---------RNTLLYTLR-----RPYFRKMENQDALVCISESVPEPI-VEWVLCDSQGESCKEESPAVVKKEEK  196 (423)
T ss_dssp             EEEEEE---------C-----CEE-----EEEEEECSSSSCEEEEEEESSCCE-EEEEEC-------------CEEECCS
T ss_pred             EEEEEE---------ecCcccccc-----CCcEeccCCceEEEEEEeeecCCe-EEEEECCCCCccccccccccccccce
Confidence            888888         445543221     112345688889999999999988 999998875532110  001111111


Q ss_pred             EEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCCc
Q psy3823         177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQ  255 (365)
Q Consensus       177 l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~  255 (365)
                          -+...|+|.|+|.|.|..|...+..+.|.|.          ..|....  . ...+.+|+.+.|.|.+.+ .|.+.
T Consensus       197 ----~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~----------~~p~~~~--~-~~~v~~G~~v~L~C~~~g~~p~p~  259 (423)
T 3qs7_E          197 ----VLHELFGTDIRCCARNELGRECTRLFTIDLN----------QTPQTTL--P-QLFLKVGEPLWIRCKAVHVNHGFG  259 (423)
T ss_dssp             ----EECCCCSSCEEEEEECSSCEEEEECEEEESS----------SCCCSST--T-EEEEETTSCEEEEEEEEESSSCCC
T ss_pred             ----EEecccCeEEEEEEEcCCCCcceeeEEEEEe----------cCCccCC--C-ceEEeCCCeEEEEEEEEcCCCCcE
Confidence                1157899999999999998765455677776          5555422  2 234889999999999998 66787


Q ss_pred             eeEEEeCCCCCCCCCCc--eeEee---CCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCc
Q psy3823         256 YFTWAFNNSDTAPRPLT--SYSIQ---DGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       256 ~~~W~~~~~~~~~~~~~--~~~~~---~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  320 (365)
                       +.|+++|.........  .....   ......|.|.+++.+|+|.|+|.|.|.   .+..+.|.|..++
T Consensus       260 -i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p  325 (423)
T 3qs7_E          260 -LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG  325 (423)
T ss_dssp             -EEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSC
T ss_pred             -EEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCC
Confidence             9999998754221000  01100   111346999999999999999999998   6667777776543

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=100.00  E-value=1e-32  Score=248.36  Aligned_cols=280  Identities=14%  Similarity=0.219  Sum_probs=167.9

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCC-----------cceEEEEeCCCcCCCC--------CCceeEecCCeEEEEEEccC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQ-----------AQYFTWAFNNSGTAPR--------PLTSYSIQDGSTSVARYTPT   77 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~-----------~~~v~W~~~~~~~l~~--------~~~~~~~~~~~~~~l~i~~~   77 (365)
                      .....+.+.+|+.+.|.|.+.+.|.           + .++|++++.. ...        ........++   .|.|.++
T Consensus        12 ~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~-~i~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~---~L~i~~~   86 (349)
T 4dep_C           12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGL-TLIWYWTRQD-RDLEEPINFRLPENRISKEKD---VLWFRPT   86 (349)
T ss_dssp             CCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTC-EEEEEEEESS-CCCEEECCCCCGGGCEEEETT---EEEESSC
T ss_pred             ceeeeEEEecCCeEEEEccccccccccccccccCCCc-eEEEEECCCC-CcccccccccccCceEeecCC---EEEEccC
Confidence            3455677899999999999877664           7 9999999853 211        1111122333   7999999


Q ss_pred             CCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE-----EecCCCCe
Q psy3823          78 SELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-----QANPPYKK  152 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~-----~~~p~~~~  152 (365)
                      +.+|+|.|+|.|.+..+.....+.|.|.....    ...+.+ ..+    ....+.+|+.+.|.|.+     .+.|.+. 
T Consensus        87 ~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~----~~~~~~-~~~----~~~~~~~g~~~~l~C~~~~~~~~g~p~~~-  156 (349)
T 4dep_C           87 LLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS----CFNSPM-KLP----VHKLYIEYGIQRITCPNVDGYFPSSVKPT-  156 (349)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEECCCT----TSCCSC-CCC----EEEEETTCSEEEEECCSCTTSSCTTSCCE-
T ss_pred             ChhhCEEEEEEEecCCceEEEEEEEEEecCCc----ccCccc-ccC----cceeeecCccEEEEcCCCcccccCCCCce-
Confidence            99999999999999887777778888843211    011110 000    12356789999999975     5667776 


Q ss_pred             eEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCC-CCC--CcccEEEEEeeeeecccccCCCCceecC
Q psy3823         153 LIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQ-GEG--GSTPFDLNINKMVNLIFNSIDEPVCKQS  229 (365)
Q Consensus       153 i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~--~s~~~~l~v~~~~~~~~~~~~~p~~~~~  229 (365)
                      +.|++++..+...  .........|.|.+++.+|+|.|+|.+.|.. |..  .+..+.|.|..+...    ..+|.+..+
T Consensus       157 v~W~k~~~~l~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~----~~~p~i~~~  230 (349)
T 4dep_C          157 ITWYMGCYKIQNF--NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN----AVPPVIHSP  230 (349)
T ss_dssp             EEEEETTEECCSC--SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG----CCSCEEC--
T ss_pred             EEEeeCCEECCCc--cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC----CCCCeEecC
Confidence            9999999988542  3344445679999999999999999999986 433  246667777610000    015555444


Q ss_pred             ccce-eeeecCceEEEEEEEee----eCCCceeEEEeCCCCCCCCCCceeE------ee-CC--CEEEEEEcCCCcccC-
Q psy3823         230 QQRI-YGALRNEQVLVSCTVDA----NPQAQYFTWAFNNSDTAPRPLTSYS------IQ-DG--STSVARYTPTSELEY-  294 (365)
Q Consensus       230 ~~~~-~~~~~g~~~~l~C~~~~----~p~~~~~~W~~~~~~~~~~~~~~~~------~~-~~--~~s~l~i~~v~~~d~-  294 (365)
                      .... ..+..|+.+.|.|.+.+    .|.+. +.|+++|............      .. .+  ..+.|.|.++..+|+ 
T Consensus       231 ~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~  309 (349)
T 4dep_C          231 NDHVVYEKEPGEELLIPCTVYFSFLMDSRNE-VWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLK  309 (349)
T ss_dssp             --------------CCCEEEEECCCTTCCCE-EEEESSCC--------CCCCEEEECCTTCCEEEEECC-----------
T ss_pred             CCceeEEEecCCcEEEEEEEEEccCCCCCCE-EEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcC
Confidence            3222 24789999999999984    57787 9999998754331111111      00 11  234599999999999 


Q ss_pred             eEEEEEEEcCCccceecEEEEEEc
Q psy3823         295 GTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       295 G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      |.|+|.|.|..|.....+.|.|..
T Consensus       310 G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          310 RSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             --CEEEEECSSCEEEEECC-----
T ss_pred             CcEEEEEEcCCCcEEEEEEEeeec
Confidence            999999999999999888888865

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=2.5e-32  Score=250.53  Aligned_cols=290  Identities=19%  Similarity=0.257  Sum_probs=198.7

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEc----cCCCCCCe
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYT----PTSELEYG   83 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~----~~~~~d~G   83 (365)
                      +..+|...........+.+|+.++|.|.+.++|.+ .++|+|++.. +................|.|.    +++.+|+|
T Consensus        13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~-l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G   90 (404)
T 3p3y_A           13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAP-SFHWTRNSRF-FNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEG   90 (404)
T ss_dssp             CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCC-EEEEEETTEE-CCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCE
T ss_pred             ccCCCcccccCCccEEEcCCCCEEEEEEecCCCCC-eEEEEECCEE-eeeecCCcceEecCCceEEEEeccCCCCccCCE
Confidence            44566665544555678899999999999889999 9999999986 543221111111111245554    78889999


Q ss_pred             EEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE-EecCCCCeeEEEeCCeE
Q psy3823          84 TLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-QANPPYKKLIWTHNGIT  161 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~i~W~~~~~~  161 (365)
                      .|+|.|.|..+... ..+.|.|         ..+|......   .....+.+|+.+.|.|.+ .+.|.+. +.|++++..
T Consensus        91 ~Y~C~a~n~~g~~~s~~~~l~V---------~~~p~~~~~~---~~~~~v~~G~~v~l~C~~~~~~p~~~-v~W~~~~~~  157 (404)
T 3p3y_A           91 EYQCFARNKFGTALSNRIRLQV---------SKSPLWPKEN---LDPVVVQEGAPLTLQCNPPPGLPSPV-IFWMSSSME  157 (404)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEE---------CCCCCCCCCC---CCCEEEETTSCEEECCCCCCCSSCCE-EEEECTTSC
T ss_pred             EEEEEEEcCCCeEeeeeEEEEE---------eccCccccCC---CCCeEEccCCcEEEEeCCCCCCCCCe-EEEeCCCcc
Confidence            99999999887764 6678888         4444322111   123468899999999998 5667665 999998754


Q ss_pred             EeeCCCCceEEeeceEEEeeecCCC-CeEEEEEEEcCCCCCC--cccEEEEEeeeeecccccCCCCceecCc--cceeee
Q psy3823         162 ISNNASAGRIITNQTLVLQSVTRHS-GGLYACSAINSQGEGG--STPFDLNINKMVNLIFNSIDEPVCKQSQ--QRIYGA  236 (365)
Q Consensus       162 l~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~--s~~~~l~v~~~~~~~~~~~~~p~~~~~~--~~~~~~  236 (365)
                      ............++.|.|.++...| +|.|+|.+.|..+...  +..+.+.+.....   .....|.+..+.  .....+
T Consensus       158 ~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~---~~~~~p~~~~~~~~~~~~~~  234 (404)
T 3p3y_A          158 PITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRG---VAERTPSFMYPQGTASSQMV  234 (404)
T ss_dssp             BCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSC---CCCCCCCBSSSCSSEEEEEE
T ss_pred             ccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCC---ccccCCccccccCCCCCceE
Confidence            4332332233346789999999999 6999999999877542  2234455541000   000233332221  123347


Q ss_pred             ecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      ..|+.+.|.|.+.+.|.+. +.|+++|.......  ......  ...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus       235 ~~G~~v~l~C~~~g~p~~~-v~W~~~~~~~~~~~--~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  309 (404)
T 3p3y_A          235 LRGMDLLLECIASGVPTPD-IAWYKKGGDLPSDK--AKFENF--NKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRV  309 (404)
T ss_dssp             ETTSCEEEECCBCCSSCCE-EEEEETTBCCCTTT--EEEEGG--GTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ecCCCEEEEEEECCCCCCc-EEEEECCEECCCCc--cccccc--CceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEE
Confidence            8999999999999999997 99999987543222  222221  235999999999999999999999999988888888


Q ss_pred             EcCc
Q psy3823         317 VKAG  320 (365)
Q Consensus       317 ~~~~  320 (365)
                      ..++
T Consensus       310 ~~~p  313 (404)
T 3p3y_A          310 KAAP  313 (404)
T ss_dssp             EEEE
T ss_pred             eCCC
Confidence            7544

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=100.00  E-value=3.4e-31  Score=234.89  Aligned_cols=271  Identities=16%  Similarity=0.224  Sum_probs=189.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcc----eEEEEeCCCcCCCC-------------CCceeEe-----cCCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQ----YFTWAFNNSGTAPR-------------PLTSYSI-----QDGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~----~v~W~~~~~~~l~~-------------~~~~~~~-----~~~~~~~l~i~~   76 (365)
                      +..+.+..|++++|.|.+.+.+.+.    .++|+|++.. ...             .......     ......+|.|.+
T Consensus         7 P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~   85 (313)
T 4fqp_A            7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGES-GSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG   85 (313)
T ss_dssp             CSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSS-SCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCC-cceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence            4456678999999999966555441    4899998764 221             0111110     011223699999


Q ss_pred             CCCCCCeEEEEEEEeC-CCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE-ecCCCCeeE
Q psy3823          77 TSELEYGTLLCWARNE-QGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ-ANPPYKKLI  154 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~-~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~i~  154 (365)
                      ++.+|+|.|+|.+.+. .+.....+.|.+         ..+|.+...+.    ...+..|+.+.+.|.+. +.|.+. +.
T Consensus        86 v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v---------~~~P~~~~~~~----~~~~~~~~~~~~~C~~~~~~P~~~-i~  151 (313)
T 4fqp_A           86 LRVEDEGNYTCLFVTFPQGSRSVDIWLRV---------LAKPQNTAEVQ----KVQLTGEPVPMARCVSTGGRPPAQ-IT  151 (313)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEEEEECC---------BBCCEEEEEEC----CBCCCSSCEEEEEEEEEEEBSCCE-EE
T ss_pred             CChhhCEEEEEEEeeccCcceeeeeeeee---------ccCCcceeccc----ceEeecCceEEEEEEccCccCCcE-EE
Confidence            9999999999988643 333446666766         56776655442    23566788899999876 566665 99


Q ss_pred             EEeCCeEEeeCCC-----CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC-cccEEEEEeeeeecccccCCCCceec
Q psy3823         155 WTHNGITISNNAS-----AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG-STPFDLNINKMVNLIFNSIDEPVCKQ  228 (365)
Q Consensus       155 W~~~~~~l~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-s~~~~l~v~~~~~~~~~~~~~p~~~~  228 (365)
                      |++++..+.....     .+.....+.|.|.....+|+|.|+|.|.|..+... +..+.|.|.          ++|.+..
T Consensus       152 W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~----------~~P~v~~  221 (313)
T 4fqp_A          152 WHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY----------YPPEVSI  221 (313)
T ss_dssp             EEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC----------EEEEEEE
T ss_pred             eecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc----------cCCcccc
Confidence            9999877643211     11122234688899999999999999999876543 344556666          6776653


Q ss_pred             CccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         229 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       229 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      .......+..|+.++|.|.+.|.|.|..+.|+++|......    .... +.  .|.|.+++.+|+|.|+|.|.|..|..
T Consensus       222 ~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~----~~~~-~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~  294 (313)
T 4fqp_A          222 SGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF----AVAQ-GA--QLLIRPVDKPINTTLICNVTNALGAR  294 (313)
T ss_dssp             ECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT----EEEE-TT--EEEECCCSSCCEEEEEEEEECSSCEE
T ss_pred             ccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCc----eEEe-CC--EEEECcCChhhCEEEEEEEEeCCCcE
Confidence            33232336778999999999999998449999998754221    1122 22  59999999999999999999999999


Q ss_pred             eecEEEEEEcCcc
Q psy3823         309 RTPCTFHVVKAGE  321 (365)
Q Consensus       309 ~~~~~l~v~~~~~  321 (365)
                      +.++.|.|..++|
T Consensus       295 ~~~~~l~V~~~PP  307 (313)
T 4fqp_A          295 QAELTVQVKEGPP  307 (313)
T ss_dssp             EEEEEEEEECCC-
T ss_pred             EEEEEEEEEeCCC
Confidence            9999999987654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.98  E-value=9.8e-32  Score=244.90  Aligned_cols=282  Identities=19%  Similarity=0.218  Sum_probs=193.3

Q ss_pred             ccCCeEeeCCceEEE--EecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCC-CCCeE
Q psy3823           9 TDEPVCKQSQQRIYG--ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSE-LEYGT   84 (365)
Q Consensus         9 ~~~p~~~~~~~~~~~--v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~-~d~G~   84 (365)
                      +++|.+.........  ..+|+.++|.|.+.++|.+ .++|++++.. +...... ....++   .|.|.++.. +|+|.
T Consensus         2 ~~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~k~g~~-~~~~~~~~~~~~~~---~L~i~~~~~~~D~G~   76 (382)
T 1cs6_A            2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPA-TYRWKMNGTE-LKMGPDSRYRLVAG---DLVISNPVKAKDAGS   76 (382)
T ss_dssp             CEEEEEEECCCCEEEETTCSCCEEEECCEEEEESCC-EEEEEETTEE-CCCSTTSSEEEETT---EEEEESCCHHHHCEE
T ss_pred             CCCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCC-EEEEEECCEE-CCcCCCccEEeeCC---eEEEecccccccCEE
Confidence            345655543332221  2689999999998888998 9999999988 6544222 222344   789999986 99999


Q ss_pred             EEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE-ecCCCCeeEEEeCCeEE
Q psy3823          85 LLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ-ANPPYKKLIWTHNGITI  162 (365)
Q Consensus        85 Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~~~~l  162 (365)
                      |+|.|.|..|... ..+.|.|.         ..|.+....   .....+.+|+.+.|.|.+. +.|.+. +.|++++..+
T Consensus        77 Y~C~a~n~~g~~~s~~~~l~v~---------~~~~~~~~~---~~~~~v~~G~~v~l~C~~~~~~p~~~-i~W~~~~~~~  143 (382)
T 1cs6_A           77 YQCVATNARGTVVSREASLRFG---------FLQEFSAEE---RDPVKITEGWGVMFTCSPPPHYPALS-YRWLLNEFPN  143 (382)
T ss_dssp             EEEEEEETTEEEECCCEEEEEE---------EECCCCSSC---CCCEEEETTSCEEECCCCCSEESCCE-EEEEESSTTC
T ss_pred             EEEEEEcCCcEEEecceEEEee---------ccccccccC---CCceEEecCCcEEEEeCCCCCCCCcE-EEEEECCCcc
Confidence            9999999877543 45666662         122111111   1334678999999999865 456655 9999998765


Q ss_pred             eeCCCCceEE--eeceEEEeeecCCCCeEEEEEEEcCCCCC----CcccEEEEEeeeeecccccCCCCceecCccceeee
Q psy3823         163 SNNASAGRII--TNQTLVLQSVTRHSGGLYACSAINSQGEG----GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGA  236 (365)
Q Consensus       163 ~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~  236 (365)
                      ..........  .++.|.|.+++..|+|.|+|.+.|..+..    .+..+.|.+....    ....+|.+.........+
T Consensus       144 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~----~~~~~P~~~~~~~~~~~~  219 (382)
T 1cs6_A          144 FIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAED----ARQYAPSIKAKFPADTYA  219 (382)
T ss_dssp             BCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCC----CCCEEEEEEECCCSEEEE
T ss_pred             ccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhh----cccCCCceeccCCCceEE
Confidence            4322222222  24689999999999999999999887532    1233455543100    001244444333333448


Q ss_pred             ecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      ..|+.+.|.|.+.+.|.+. +.|++++.....     ..  ......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus       220 ~~G~~v~l~C~~~g~p~~~-i~W~~~~~~~~~-----~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  291 (382)
T 1cs6_A          220 LTGQMVTLECFAFGNPVPQ-IKWRKLDGSQTS-----KW--LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII  291 (382)
T ss_dssp             ETTCCEEEECEEEEESCCE-EEEEECCSCCSC-----CC--SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEccCCCCE-EEEEECCccccc-----EE--ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            8999999999999999998 999998764322     11  122345999999999999999999999999888888887


Q ss_pred             EcCc
Q psy3823         317 VKAG  320 (365)
Q Consensus       317 ~~~~  320 (365)
                      ..++
T Consensus       292 ~~~p  295 (382)
T 1cs6_A          292 HAQP  295 (382)
T ss_dssp             EEEE
T ss_pred             ecCC
Confidence            6443

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.98  E-value=4.4e-31  Score=231.51  Aligned_cols=271  Identities=15%  Similarity=0.190  Sum_probs=192.0

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      .+|.+. ..+....+.+|+.++|.|.+.+     .++|++++.. +    ......+   ..|.|.+++.+|+|.|+|.+
T Consensus        11 ~~P~i~-~~~~~~~v~~G~~v~l~C~~~~-----~i~W~~~~~~-~----~~~~~~~---~~L~i~~~~~~d~G~Y~C~~   76 (290)
T 2o26_X           11 SPPSIH-PAQSELIVEAGDTLSLTCIDPD-----FVRWTFKTYF-N----EMVENKK---NEWIQEKAEATRTGTYTCSN   76 (290)
T ss_dssp             -CCEES-SCSSEEEEETTSCEEEEEECTT-----EEEEEEECSS-S----CEEEECS---SEEEETTCCGGGCEEEEEEE
T ss_pred             CCCEEe-CCCCeEEEcCCCcEEEEECCCC-----cEEEecCCcc-e----eeecCCC---ceEEEeccCHHhCeEEEEEe
Confidence            345443 4566777899999999999765     7999999988 5    1111122   48999999999999999999


Q ss_pred             EeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEE-eCCeEEeeCCCC
Q psy3823          90 RNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWT-HNGITISNNASA  168 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~-~~~~~l~~~~~~  168 (365)
                      .+  +. ...+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.+ |....+.|+ +||..+... ..
T Consensus        77 ~n--g~-~~~~~l~V---------~~~~~~~~~~----~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~-~~  138 (290)
T 2o26_X           77 SN--GL-TSSIYVFV---------RDPAKLFLVG----LPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTD-LT  138 (290)
T ss_dssp             SS--SC-EEEEEEEE---------ECSSCCBCCC----CCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTT-CE
T ss_pred             eC--Cc-cEEEEEEE---------eCCCcccccc----cceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCC-Cc
Confidence            98  33 57778888         3344433221    3346779999999999985 662349995 688776532 11


Q ss_pred             ceEEeeceEEEeeecCCCCe-EEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEE
Q psy3823         169 GRIITNQTLVLQSVTRHSGG-LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT  247 (365)
Q Consensus       169 ~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~  247 (365)
                      ........|.|.++..+|+| .|+|.+.|..+...+..+.|.|...      ...+|.+...+... .+..|+.+.|.|.
T Consensus       139 ~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~------~~~~P~i~~~~~~~-~v~~G~~v~l~C~  211 (290)
T 2o26_X          139 FVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREA------IKAIPVVSVPETSH-LLKKGDTFTVVCT  211 (290)
T ss_dssp             EEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECC------CCSCCEEECSCSBC-CCCTTCCEEEEEE
T ss_pred             eeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeC------CCCCCccccCCCcc-eEecCCcEEEEEE
Confidence            12223568999999999999 9999999986654445677777510      01455554443333 4889999999999


Q ss_pred             EeeeCCCceeEEEeCCCCC---CCCCCceeEe---eCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         248 VDANPQAQYFTWAFNNSDT---APRPLTSYSI---QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       248 ~~~~p~~~~~~W~~~~~~~---~~~~~~~~~~---~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      +.+.|.|..+.|++++...   ..........   .....+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+
T Consensus       212 ~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  289 (290)
T 2o26_X          212 IKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK  289 (290)
T ss_dssp             EEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred             EecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeC
Confidence            9999888459999998752   1111111111   1223467999999999999999999999999988888887654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.98  E-value=9.7e-32  Score=237.75  Aligned_cols=270  Identities=14%  Similarity=0.159  Sum_probs=185.8

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC------C-----------ceeE-ecCCeEEEEEEccCCCCCCe
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP------L-----------TSYS-IQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~------~-----------~~~~-~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +.+.+|++++|.|.+.+.+.+..++|+|++.. ....      .           +... .......+|.|.+++.+|+|
T Consensus         9 vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   87 (308)
T 4fom_A            9 VTAVWGKNVSLKCLIEVNETITQISWEKIHGK-SSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG   87 (308)
T ss_dssp             CEEETTSCEEECCBCCCSSCEEEEEEEEESSS-CEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred             eEEEcCCcEEEEEEecCCCCCcEEEEEECCCC-CCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence            56789999999999654333328999997654 2110      0           0000 01112247999999999999


Q ss_pred             EEEEEEEeCCC-CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE-ecCCCCeeEEEeCCeE
Q psy3823          84 TLLCWARNEQG-NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ-ANPPYKKLIWTHNGIT  161 (365)
Q Consensus        84 ~Y~C~a~~~~~-~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~~~~  161 (365)
                      .|+|.|.+... .....+.+.+         ...|.+......  .......|+.+.|.|.+. |.|.+. +.|++++..
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~v---------~~~~~~~~~~~~--~~~~~~~~~~~~l~C~~~~g~P~~~-i~W~~~~~~  155 (308)
T 4fom_A           88 KYICKAVTFPLGNAQSSTTVTV---------LVEPTVSLIKGP--DSLIDGGNETVAAICIAATGKPVAH-IDWEGDLGE  155 (308)
T ss_dssp             EEEEEEEETTTEEEEEEEEEEE---------EBCCEEEEEECS--SCCCTTCSCEEEEEEEEEEEBSCCE-EEECCCSSB
T ss_pred             EEEEEEeeCCCcceeeeeEEEe---------eecccccccccc--ceeEEcCCceEEEEEEecCCcCCce-EEEEECCcc
Confidence            99999988643 3446666666         334443332222  223456689999999765 777776 999999887


Q ss_pred             EeeCC---CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC-cccEEEEEeeeeecccccCCCCceecCccceeeee
Q psy3823         162 ISNNA---SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG-STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGAL  237 (365)
Q Consensus       162 l~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~  237 (365)
                      +....   ..........|.|..+..+|+|.|+|.+.|..+... +..+.|.|.          .+|.+.........+.
T Consensus       156 ~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~----------~~P~~~~~~~~~~~~~  225 (308)
T 4fom_A          156 MESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQ----------YAPEVSVTGYDGNWFV  225 (308)
T ss_dssp             CCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCC----------EEEEECCBCCCSCEET
T ss_pred             cccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEe----------cCCeeEEcccceeeee
Confidence            64321   111222345799999999999999999999877543 344555666          5666554333333367


Q ss_pred             cCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      .|+.+.|.|.+.|.|+|..+.|++++......    ... . ....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       226 ~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~----~~~-~-~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~  299 (308)
T 4fom_A          226 GRKGVNLKCNADANPPPFKSVWSRLDGQWPDG----LLA-S-DNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYIS  299 (308)
T ss_dssp             TCCSCEEECCEEEESCEEEEECCBSSSCCCSS----CBC-S-TTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEE
T ss_pred             ccccEEEEEEEecCCCCcEEEEEECCeECCCc----EEE-c-CCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            78999999999999988449999988644221    111 1 22347788999999999999999999999999999887


Q ss_pred             cCc
Q psy3823         318 KAG  320 (365)
Q Consensus       318 ~~~  320 (365)
                      .++
T Consensus       300 ~~P  302 (308)
T 4fom_A          300 DPP  302 (308)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.98  E-value=4.6e-33  Score=249.03  Aligned_cols=287  Identities=18%  Similarity=0.236  Sum_probs=134.0

Q ss_pred             CceEEEEecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .+....+.+|+.++|.|.+.+. |.+ .++|++++.. +........ .   ...|.|.+++.+|+|.|+|.+.+. +..
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~k~g~~-~~~~~~~~~-~---~~~L~i~~v~~~D~G~Y~C~a~n~-~~~   86 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMG-PTVWVKDGTG-LVPSERVLV-G---PQRLQVLNASHEDSGAYSCRQRLT-QRV   86 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCc-ceEEEECCee-CCCcccEEe-c---cceEEEeecccccCEEEEEEEEeC-CeE
Confidence            4667778999999999997665 567 9999999987 654333221 2   248999999999999999999988 666


Q ss_pred             cccEEEEEEeccccCC-------------CCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEe
Q psy3823          97 RTPCTFHVVKAGECEH-------------PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITIS  163 (365)
Q Consensus        97 ~~~~~l~V~~~~~~~~-------------~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~  163 (365)
                      ...+.|.|...-....             ...+|.+............+.+|+.+.|.|.+.|.|.+. +.|++++..+.
T Consensus        87 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~~~~~~  165 (334)
T 1ry7_B           87 LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS-ISWLKNGREFR  165 (334)
T ss_dssp             --------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCE-EECCBTTBCCC
T ss_pred             EEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCe-EEEEECCEECc
Confidence            6777777732100000             000122110000000123577899999999999988776 99999998876


Q ss_pred             eCCCCc---eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCc
Q psy3823         164 NNASAG---RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNE  240 (365)
Q Consensus       164 ~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~  240 (365)
                      ......   ......+|.|.+++..|+|.|+|.+.|..|... ..+.|.|...      ....|.+.........+..|+
T Consensus       166 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~------~~~~p~~~~~~~~~~~~~~G~  238 (334)
T 1ry7_B          166 GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR-QTYTLDVLER------SPHRPILQAGLPANQTAVLGS  238 (334)
T ss_dssp             TTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEE-EEEEEEEECC------CCSSCBCCTTCSCCEEEESSC
T ss_pred             ccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEE-EEEEEEEecC------CCCCCceEecCCCceEEeCCC
Confidence            433221   112256899999999999999999999987644 5677777710      001233332222333488999


Q ss_pred             eEEEEEEEeeeCCCceeEEEe----CCCCCCCCCCce-eEee-------CCCEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         241 QVLVSCTVDANPQAQYFTWAF----NNSDTAPRPLTS-YSIQ-------DGSTSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       241 ~~~l~C~~~~~p~~~~~~W~~----~~~~~~~~~~~~-~~~~-------~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      .+.|.|.+.+.|.+. +.|++    +|.......... ....       ++..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       239 ~v~l~C~~~g~p~p~-v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  317 (334)
T 1ry7_B          239 DVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFS  317 (334)
T ss_dssp             CEEECCCCBCSSCEE-EEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCE
T ss_pred             CEEEEEEEecCCCCe-EEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeE
Confidence            999999999999997 99999    554332211111 1111       2223469999999999999999999999999


Q ss_pred             eecEEEEEEcCc
Q psy3823         309 RTPCTFHVVKAG  320 (365)
Q Consensus       309 ~~~~~l~v~~~~  320 (365)
                      ..++.|.|...+
T Consensus       318 ~~~~~l~V~~~~  329 (334)
T 1ry7_B          318 HHSAWLVVLPAE  329 (334)
T ss_dssp             EEEEEEEEECSC
T ss_pred             EEEEEEEEEECC
Confidence            999999998664

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.98  E-value=4.7e-31  Score=250.51  Aligned_cols=279  Identities=19%  Similarity=0.266  Sum_probs=193.8

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce--eEe---cCCeEEEEEEccCCCCCCeE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS--YSI---QDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~--~~~---~~~~~~~l~i~~~~~~d~G~   84 (365)
                      .+|.+. ..+....+.+|+.++|.|.+.+.|.+..++|++++.. +......  ...   .......|.|.+++.+|+|.
T Consensus       210 ~~p~i~-~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~  287 (524)
T 2ec8_A          210 AVPVVS-VSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQ-TKLQEKYNSWHHGDFNYERQATLTISSARVNDSGV  287 (524)
T ss_dssp             SCCEEE-CSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCS-CCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEE
T ss_pred             CCCcEE-ecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCC-CccccccccccccCCccceEEEEEECCCCHHHCEE
Confidence            445443 3444457899999999999778888834999999987 4211111  111   12345689999999999999


Q ss_pred             EEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEee
Q psy3823          85 LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN  164 (365)
Q Consensus        85 Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~  164 (365)
                      |+|.|.|..|.....+.|.|         ..+|.+...+.. .....+.+|+.+.|.|.+.|.|.+..+.|+++|..+..
T Consensus       288 Y~C~a~n~~g~~~~~~~l~V---------~~~p~~~~~~~~-~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~  357 (524)
T 2ec8_A          288 FMCYANNTFGSANVTTTLEV---------VDKGFINIFPMI-NTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD  357 (524)
T ss_dssp             EEEEEECSSCEEEEEEEEEE---------ESSCEEEEEESS-CSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSS
T ss_pred             EEEEEEecCCceEEEEEEEE---------eccCceEeecCC-CceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccC
Confidence            99999999888878899999         677877665532 13457889999999999999888777999999988765


Q ss_pred             CCCCceEE-------eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeee
Q psy3823         165 NASAGRII-------TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGAL  237 (365)
Q Consensus       165 ~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~  237 (365)
                      ........       ...+|.|.++..+|+|.|+|.|.|..|... ..+.|.|.          .+|.+.....    ..
T Consensus       358 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~----------~~P~i~~~~~----~~  422 (524)
T 2ec8_A          358 KWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAA-IAFNVYVN----------TKPEILTYDR----LV  422 (524)
T ss_dssp             SBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEE-EEEEEEEC----------EEEEEEEEEC----CS
T ss_pred             CccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEE-EEEEEEEe----------cCCeEeeccc----Cc
Confidence            43211111       245899999999999999999999998754 67888888          7777654332    33


Q ss_pred             cCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------CCCc---eeEeeCCCEEE-EEEcCCCcccCeEEEEEEEcCCc
Q psy3823         238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------RPLT---SYSIQDGSTSV-ARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------~~~~---~~~~~~~~~s~-l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      .|   .|.|.+.|.|.|. +.|++++.....       ....   .....++.... ..+.....+|+|.|+|.|.|..|
T Consensus       423 ~g---~l~C~~~g~P~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G  498 (524)
T 2ec8_A          423 NG---MLQCVAAGFPEPT-IDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVG  498 (524)
T ss_dssp             SS---CEEEEEEEESCCE-EECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSC
T ss_pred             Cc---EEEEEEEeecCCE-EEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCC
Confidence            45   9999999999998 999998754311       0011   11122333222 22444446999999999999999


Q ss_pred             cceecEEEEEEcC
Q psy3823         307 SQRTPCTFHVVKA  319 (365)
Q Consensus       307 ~~~~~~~l~v~~~  319 (365)
                      ..+..+.|.|...
T Consensus       499 ~~~~~~~l~V~e~  511 (524)
T 2ec8_A          499 KTSAYFNFAFKGN  511 (524)
T ss_dssp             EEECCCCCCC---
T ss_pred             ceEEEEEEEEecC
Confidence            9999998888754

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.98  E-value=6.9e-31  Score=248.41  Aligned_cols=268  Identities=15%  Similarity=0.165  Sum_probs=186.4

Q ss_pred             EeecccCCeEeeCCceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCcee---EecC---CeEEEEEEccC
Q psy3823           5 IFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSY---SIQD---GSTSVARYTPT   77 (365)
Q Consensus         5 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~---~~~~---~~~~~l~i~~~   77 (365)
                      .+.+.+.|..   .+....+.+|+.+.|.|.+. +.|.+ .++|++++.. +.......   ...+   .....|.|.++
T Consensus       223 ~l~V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p-~i~W~k~g~~-l~~~~~~~~~~~~~~~~~~~~~~L~I~~v  297 (527)
T 3qs9_E          223 TIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGF-GLTWELENKA-LEEGNYFEMSTYSTNRTMIRILFAFVSSV  297 (527)
T ss_dssp             EEESSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCC-CEEEECSSSC-CCGGGEEEEEEEETTTEEEEEEEEEESSC
T ss_pred             EEEEeccCcc---CCCceEEeCCCeEEEEEEEccCCCCe-EEEEEECCEE-CCCCceeeeeeeccCcceeeEEEEEEccC
Confidence            4555565554   34467788999999999974 88999 9999999987 65432211   1111   13346999999


Q ss_pred             CCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe
Q psy3823          78 SELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH  157 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~  157 (365)
                      +.+|+|.|+|.|.|.   ....+.|.|         ..+|.+.+.+..  ....+.+|+.+.|.|.+.|+|.|. +.|++
T Consensus       298 ~~~DsG~Y~C~a~N~---~~~~~~L~V---------~~~p~i~~~~~~--~~~~v~~G~~v~L~C~~~g~P~p~-i~W~k  362 (527)
T 3qs9_E          298 ARNDTGYYTCSSSKH---PSQSALVTI---------VEKGFINATNSS--EDYEIDQYEEFCFSVRFKAYPQIR-CTWTF  362 (527)
T ss_dssp             CGGGCEEEEEEETTE---EEEEEEEEE---------C--CEEECCCSC--CEECCCTTCCCCEEEEEEEESCCE-EEEEE
T ss_pred             CcccCeEEEEEEEeC---CCceEEEEE---------EccCccccccCc--ccEEEcCCCeEEEEEEEEecCCCE-EEEEE
Confidence            999999999999987   457788888         667765544332  235678899999999999999987 99999


Q ss_pred             CCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeee
Q psy3823         158 NGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGAL  237 (365)
Q Consensus       158 ~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~  237 (365)
                      +|..+.....  ......+|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.          .+|.+.....      
T Consensus       363 ~g~~l~~~~~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~-~~~~L~V~----------~~P~i~~~~~------  423 (527)
T 3qs9_E          363 SRKSFPCEQK--GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFT-KMFTLNIR----------RKPQVLAEAS------  423 (527)
T ss_dssp             TTEEEECBCC--BCSSSSEEEEECCCTTCCSCEEEEEEETTEEEE-EEEEEC------------CCCEEEECCC------
T ss_pred             CCEECcCCcc--cccCCcEEEEecCCcccCEEEEEEEEeCCCcEE-EEEEEEEe----------cCCeEEEeCC------
Confidence            9999975433  122456899999999999999999999998765 56888888          8887754321      


Q ss_pred             cCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCc------------eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLT------------SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~------------~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                       |  ..|.|.+.|.|.|. +.|++++.........            .........+.|.|..  .+|+|.|+|.|.|..
T Consensus       424 -~--~~l~C~a~g~P~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~--~~d~G~Y~C~A~N~~  497 (527)
T 3qs9_E          424 -A--SQASCFSDGYPLPS-WTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSE--AIKGFLVKCCAYNSL  497 (527)
T ss_dssp             -C--E---EEEECSSCCE-EEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCC--SSCSCEEEEEEECSS
T ss_pred             -C--CEEEEEEEEEcCCe-EEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEE--cCCCEEEEEEEEeCC
Confidence             2  35799999999998 9999876532111100            0001111223344443  569999999999999


Q ss_pred             ccceecEEEEEE
Q psy3823         306 GSQRTPCTFHVV  317 (365)
Q Consensus       306 g~~~~~~~l~v~  317 (365)
                      |..+..+.|.|.
T Consensus       498 G~~~~~~~L~V~  509 (527)
T 3qs9_E          498 GTSCETILLNSP  509 (527)
T ss_dssp             CEEEEEEEC---
T ss_pred             CCceeEEEEecC
Confidence            999988888664

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.97  E-value=1.7e-29  Score=230.62  Aligned_cols=301  Identities=15%  Similarity=0.155  Sum_probs=210.1

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeC--CCcCCCCC-----CceeEecCCeEEEEEEccCCCCCCeEEEEEEEeC
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFN--NSGTAPRP-----LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE   92 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~--~~~~l~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~   92 (365)
                      ....+.+|+.++|.|.+.+.|.+ .++|+|+  +.. +...     .............|.|.+++.+|+|.|+|.|.|.
T Consensus         8 ~~~~~~~G~~v~l~C~~~g~p~p-~v~W~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   85 (389)
T 2jll_A            8 KNETTYENGQVTLVCDAEGEPIP-EITWKRAVDGFT-FTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR   85 (389)
T ss_dssp             CCEEEETTSEEEEEEEEECSSCC-EEEEEETTTTEE-ECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECS
T ss_pred             CceEEeCCCeEEEEEEeecccCC-eEEEEeCCCCce-eccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeC
Confidence            34567889999999998899999 9999999  665 4431     2222233345568999999999999999999999


Q ss_pred             CCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE
Q psy3823          93 QGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII  172 (365)
Q Consensus        93 ~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~  172 (365)
                      .|.....+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.|.|.+. +.|+++|..+..........
T Consensus        86 ~g~~~~~~~l~V---------~~~P~~~~~~----~~~~~~~g~~~~l~C~~~g~p~~~-i~W~~~g~~l~~~~~~~~~~  151 (389)
T 2jll_A           86 IGGHQKSMYLDI---------EYAPKFISNQ----TIYYSWEGNPINISCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKT  151 (389)
T ss_dssp             SCEEEEEEEEEE---------EEEEEECCSC----CEEEECTTCCEEEEECEEEESCCE-EEEEETTEESSCTTCTTEEE
T ss_pred             CCCcceEEEEEE---------EeCCEEecCc----ceEEeccCCEEEEEEEEEecCCCe-EEEEECCccCCcccCceEEE
Confidence            988888888988         5566543211    223467899999999999998876 99999999887644323222


Q ss_pred             e----eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEE
Q psy3823         173 T----NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV  248 (365)
Q Consensus       173 ~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~  248 (365)
                      .    ...|.|.++...|+|.|+|.|.|..|... ..+.+.+.          ..|..... .... ...+..+.|.|..
T Consensus       152 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~v~----------~~P~~P~~-~~~~-~~~~~~~~l~w~~  218 (389)
T 2jll_A          152 YSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRF-QEYILALA----------DVPSSPYG-VKII-ELSQTTAKVSFNK  218 (389)
T ss_dssp             EECSSCEEEEECCCSTTSSEEEEEEEEETTEEEE-EEEEEEEC----------CCCCCCEE-EEEE-EECSSCEEEEEEC
T ss_pred             eccCCEEEEEECCCChhhCEEEEEEEEcCCCcEE-EEEEEEec----------CCCCCCcc-eEEe-eccCCEEEEEEeC
Confidence            2    34799999999999999999999998754 45566665          44431111 1111 2345778999975


Q ss_pred             eee----CCCc-eeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc-----
Q psy3823         249 DAN----PQAQ-YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK-----  318 (365)
Q Consensus       249 ~~~----p~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~-----  318 (365)
                      ...    |... .+.|..++...     .......+....+.|.++...+.|.|+|.|.|..|....+..+.+..     
T Consensus       219 p~~~~g~pi~~y~v~~~~~~~~~-----~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~  293 (389)
T 2jll_A          219 PDSHGGVPIHHYQVDVKEVASEI-----WKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVRE  293 (389)
T ss_dssp             CSCCTTSCEEEEEEEEEETTCSC-----CEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCC
T ss_pred             CCCCCCcceEEEEEEEEECCCcc-----cEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCC
Confidence            321    2111 46787765421     11222333445689999999999999999999998754333333221     


Q ss_pred             Ccc------------------------------------------------------ccc-cCccccEEEEEEEEEcCCC
Q psy3823         319 AGE------------------------------------------------------CEH-PVAVSHRYVAKLYATNAKG  343 (365)
Q Consensus       319 ~~~------------------------------------------------------c~~-~l~~~~~~~~~~~~~n~~g  343 (365)
                      +.+                                                      +.+ +|.|+..|.|+|.|.|..|
T Consensus       294 p~~p~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G  373 (389)
T 2jll_A          294 PSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLG  373 (389)
T ss_dssp             CCCCCEEEEEETTTEEEEEECCCCCCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-CC
T ss_pred             CCCCccccccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEEEEEEEcCCc
Confidence            111                                                      000 7999999999999999999


Q ss_pred             CCceeeeeece
Q psy3823         344 AGPMVLMKTNT  354 (365)
Q Consensus       344 ~s~~~~~~~~~  354 (365)
                      .|++..+...|
T Consensus       374 ~s~~s~~~~~T  384 (389)
T 2jll_A          374 YSEPTVYEFSM  384 (389)
T ss_dssp             BCCCEEEEEEC
T ss_pred             CCCceeeEecC
Confidence            99987764444

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.97  E-value=7.8e-31  Score=239.38  Aligned_cols=274  Identities=14%  Similarity=0.187  Sum_probs=192.5

Q ss_pred             EeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCC---cceEEEEeCCCcCCCCC-----CceeEecCCeEEEEEEcc
Q psy3823           5 IFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ---AQYFTWAFNNSGTAPRP-----LTSYSIQDGSTSVARYTP   76 (365)
Q Consensus         5 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~---~~~v~W~~~~~~~l~~~-----~~~~~~~~~~~~~l~i~~   76 (365)
                      .+.+.+.|..... .....+.+|+.++|.|.+.+.+.   + .++|++++.. +...     .......++   .|.|.+
T Consensus        97 ~v~v~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~---~L~i~~  170 (388)
T 2v5m_A           97 HVRAVVAQYYEAD-VNKEHVIRGNSAVIKCLIPSFVADFVE-VVSWHTDEEE-NYFPGAEYDGKYLVLPSG---ELHIRE  170 (388)
T ss_dssp             EEEEECCCCCCCB-CCCEEEETTSCEEECCBCCTTTTTTEE-EEEEEETTCC-EECSSSCBTTTEEECTTS---CEEESS
T ss_pred             EEEEccccccccC-ccceeeecCCcEEEEEECcCCCCCCcc-eEEEEeCCCc-ccccccCCCCcEEEccCC---cEEEec
Confidence            3444455544332 33456789999999999766543   5 9999999876 4321     121222334   799999


Q ss_pred             CCCCCC-eEEEEEEEeCCCCCc----ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCC
Q psy3823          77 TSELEY-GTLLCWARNEQGNQR----TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYK  151 (365)
Q Consensus        77 ~~~~d~-G~Y~C~a~~~~~~~~----~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  151 (365)
                      ++.+|. |.|+|.+.+..+...    ....|.|.....    ...|.+   +........+.+|+.+.|.|.+.|+|.+.
T Consensus       171 v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~----~~~p~~---~~~~~~~~~v~~G~~v~l~C~~~g~p~p~  243 (388)
T 2v5m_A          171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS----SSAPRT---PALVQKPLELMVAHTISLLCPAQGFPAPS  243 (388)
T ss_dssp             CCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCS----CEEEEC---CSSCCCCEEEETTSCEEECCCCEEESCCE
T ss_pred             CCccccCeeEEEEeccCCCCceeeccccceEEEecCCc----CCCCcC---ccccCCceEEeeCCcEEEEEECCCCCCCE
Confidence            999999 999999998764332    223455521100    001110   00001223577899999999999988887


Q ss_pred             eeEEEeCCeEEe----eCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCcee
Q psy3823         152 KLIWTHNGITIS----NNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCK  227 (365)
Q Consensus       152 ~i~W~~~~~~l~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~  227 (365)
                       +.|++++..+.    .....+....+..|.|.++...|+|.|+|.+.|..|... ..+.|.|.          .+|.+.
T Consensus       244 -v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~----------~~p~~~  311 (388)
T 2v5m_A          244 -FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES-VETVLTVT----------APLSAK  311 (388)
T ss_dssp             -EEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEE-EEEEEEEE----------EEEEEE
T ss_pred             -EEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCcee-EEEEEEEe----------CCCccc
Confidence             99999743221    111223344567999999999999999999999998654 67788888          555554


Q ss_pred             cCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         228 QSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       228 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      ..+.. ..+..|+.+.|.|.+.|.|.+. +.|+++|.....           ..+.|.|.++..+|+|.|+|.|.|..|.
T Consensus       312 ~~~~~-~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~i~~-----------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  378 (388)
T 2v5m_A          312 IDPPT-QTVDFGRPAVFTCQYTGNPIKT-VSWMKDGKAIGH-----------SESVLRIESVKKEDKGMYQCFVRNDRES  378 (388)
T ss_dssp             EESSE-EEECTTSCEEEEEEEEEECCCE-EEEEETTEECSC-----------CSSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             cCCCc-EEecCCCCEEEEEEeccccCCe-EEEEECCEECcc-----------CCCEEEEecCChhhCEEEEEEEEcCCCc
Confidence            33333 3388999999999999999998 999998864321           1236999999999999999999999999


Q ss_pred             ceecEEEEE
Q psy3823         308 QRTPCTFHV  316 (365)
Q Consensus       308 ~~~~~~l~v  316 (365)
                      .+.++.|.|
T Consensus       379 ~~~~~~l~V  387 (388)
T 2v5m_A          379 AEASAELKL  387 (388)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            998888876

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.97  E-value=1.2e-30  Score=238.60  Aligned_cols=290  Identities=16%  Similarity=0.187  Sum_probs=192.1

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEE
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL   86 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   86 (365)
                      +..+|.+.. ++....+.+|+.++|.|.+.+ .|.+ .++|+|++.. +.......... ....+|.|.+++.+|+|.|+
T Consensus         3 v~~~P~~~~-~p~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~k~g~~-~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~   78 (395)
T 1bih_A            3 VDKYPVLKD-QPAEVLFRENNPTVLECIIEGNDQGV-KYSWKKDGKS-YNWQEHNAALR-KDEGSLVFLRPQASDEGHYQ   78 (395)
T ss_dssp             --CCCEECC-CCSEEEEETTSCEEECCCEESCCSSC-EEEEEESSSB-CCTTTTTEEEC-TTSCCEEESSCCGGGCEEEE
T ss_pred             cCCCCEeec-CCCceEEeCCCEEEEEEEEecCCCCc-eEEEEECCcC-cccccceEEEe-cCCceEEEecCCCCCCcEEE
Confidence            455666543 456677899999999999666 7888 9999999988 65544222111 11227999999999999999


Q ss_pred             EEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE-EecCCCCeeEEEeCCe---E
Q psy3823          87 CWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-QANPPYKKLIWTHNGI---T  161 (365)
Q Consensus        87 C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~i~W~~~~~---~  161 (365)
                      |.|.+..+... ..+.|.|..       ...|.+..      ....+.+|+.+.|.|.+ .+.|.+. +.|++++.   +
T Consensus        79 C~a~n~~g~~~s~~~~l~v~~-------~~~p~~~~------~~~~~~~G~~v~l~C~~~~~~p~~~-v~W~~~~~~~~~  144 (395)
T 1bih_A           79 CFAETPAGVASSRVISFRKTY-------LIASPAKT------HEKTPIEGRPFQLDCVLPNAYPKPL-ITWKKRLSGADP  144 (395)
T ss_dssp             EEEEETTEEEECCCEEEEEEE-------EECCCCEE------EEECCBTTEEEEECCCCCEEESCCE-EEEEEEETTSCG
T ss_pred             EEEEeCCCeEEeEEEEEEEEE-------eecCCcCC------cceeeeeCCcEEEEecCCCCCCCCe-EEEEecCCCcCc
Confidence            99999877654 446666522       11233222      22457799999999996 6778776 99999751   1


Q ss_pred             EeeC---CCCceEEeeceEEEeeecCCCCe---EEEEEEEcCCCCCCcccEEEEEeeeee---cccccCCCCceecCccc
Q psy3823         162 ISNN---ASAGRIITNQTLVLQSVTRHSGG---LYACSAINSQGEGGSTPFDLNINKMVN---LIFNSIDEPVCKQSQQR  232 (365)
Q Consensus       162 l~~~---~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~~~s~~~~l~v~~~~~---~~~~~~~~p~~~~~~~~  232 (365)
                      ....   ........+++|.|.+++..|+|   .|+|.+.|..+.... ...........   ........|.+.   ..
T Consensus       145 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~---~~  220 (395)
T 1bih_A          145 NADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV-VLVEYEIKGVTKDNSGYKGEPVPQYV---SK  220 (395)
T ss_dssp             GGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCE-EEEEEEECCCBCCSSCCCCCCEEEEE---CC
T ss_pred             ccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEE-EeeeEEecccccccccccCCcCceec---CC
Confidence            1110   11112233678999999999999   999999999886542 22111110000   000000122221   12


Q ss_pred             eeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCc-eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcccee-
Q psy3823         233 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLT-SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT-  310 (365)
Q Consensus       233 ~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~-  310 (365)
                      ...+..|+.+.|.|.+.+.|.+. +.|+++|......... .........+.|.|.+++.+|+|.|+|.|.|..|.... 
T Consensus       221 ~~~~~~G~~v~l~C~~~g~p~~~-i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  299 (395)
T 1bih_A          221 DMMAKAGDVTMIYCMYGSNPMGY-PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH  299 (395)
T ss_dssp             SEEEETTSCEEEEEEEECSSCCC-CEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             ceEEECCCcEEEEEEeccCCCCe-EEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEE
Confidence            23388999999999999999998 9999998644332211 11111222236999999999999999999999998655 


Q ss_pred             cEEEEEEcCc
Q psy3823         311 PCTFHVVKAG  320 (365)
Q Consensus       311 ~~~l~v~~~~  320 (365)
                      ++.|.|..++
T Consensus       300 ~~~l~V~~~P  309 (395)
T 1bih_A          300 SLKLTVVSAP  309 (395)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEcCC
Confidence            7788776443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.97  E-value=2.9e-30  Score=230.51  Aligned_cols=277  Identities=18%  Similarity=0.248  Sum_probs=189.9

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEeCCC----CCcceEEEEeCCCcC--------------C--CCCCceeEe-cCCeEE
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTVDAN----PQAQYFTWAFNNSGT--------------A--PRPLTSYSI-QDGSTS   70 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~~~~----p~~~~v~W~~~~~~~--------------l--~~~~~~~~~-~~~~~~   70 (365)
                      |......+..+.+.+|+.++|.|...+.    +.+ .+.|++++...              +  ....+.... ......
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~-~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   92 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKIT-QVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDG   92 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEE-EEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBC
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceE-EEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCc
Confidence            4444445667889999999999996655    344 89999965210              0  011111111 112234


Q ss_pred             EEEEccCCCCCCeEEEEE-EEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecC---CcEEEEEE-EE
Q psy3823          71 VARYTPTSELEYGTLLCW-ARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEG---VDIYFDCH-IQ  145 (365)
Q Consensus        71 ~l~i~~~~~~d~G~Y~C~-a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g---~~v~l~C~-~~  145 (365)
                      +|.|.+++.+|+|.|+|. +.+..+.....+.|.|         ..+|.+.+....  ....+.+|   +.+.|.|. ..
T Consensus        93 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V---------~~~p~~~~~~~~--~~~~~~~g~~~~~~~l~C~~~~  161 (331)
T 3u83_A           93 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV---------MAKPTNWIEGTQ--AVLRAKKGQDDKVLVATCTSAN  161 (331)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEE---------EBCCEEEEEECS--SCEEECTTCCCCEEEEEEEEEE
T ss_pred             eEEEcccCcccCcEEEEEEEecCCCccEEEEEEEE---------ecCCcceeecCC--CceeecCCCccceEEEEEEecC
Confidence            799999999999999998 4555565567888888         567766544332  33456777   77999998 77


Q ss_pred             ecCCCCeeEEEeC--CeEEee--CCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccC
Q psy3823         146 ANPPYKKLIWTHN--GITISN--NASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSI  221 (365)
Q Consensus       146 ~~p~~~~i~W~~~--~~~l~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~  221 (365)
                      +.|.+. +.|+++  +.....  ............|.|.++..+|+|.|+|.+.|..+... ..+.|.|.          
T Consensus       162 ~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~-~~~~l~V~----------  229 (331)
T 3u83_A          162 GKPPSV-VSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK-ESLTLNVQ----------  229 (331)
T ss_dssp             EBSCCE-EEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEE-EEEECCEE----------
T ss_pred             CcCCce-EEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcce-eeEEEEEe----------
Confidence            888776 999995  332211  11112222345688888899999999999999887543 66777887          


Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEc-CCCcccCeEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYT-PTSELEYGTLLCW  300 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~-~v~~~d~G~Y~C~  300 (365)
                      .+|.+.........+..|+.+.|.|.+.+.|.+..+.|++++......   .. ..+   ..|.|. ++..+|+|.|+|.
T Consensus       230 ~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~---~~-~~~---~~L~i~~~v~~~d~G~Y~C~  302 (331)
T 3u83_A          230 YEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG---VE-AQN---RTLFFKGPINYSLAGTYICE  302 (331)
T ss_dssp             EEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT---EE-EET---TEEEECSCCCGGGCEEEEEE
T ss_pred             cCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc---ce-ecC---cEEEEeCCCccccCeEEEEE
Confidence            667665333232337889999999999999988559999988754221   11 122   259999 8999999999999


Q ss_pred             EEcCCccceecEEEEEEcC
Q psy3823         301 ARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       301 a~n~~g~~~~~~~l~v~~~  319 (365)
                      |.|..|..+.++.|.|..+
T Consensus       303 a~N~~G~~~~~~~l~V~~~  321 (331)
T 3u83_A          303 ATNPIGTRSGQVEVNITEA  321 (331)
T ss_dssp             EEETTEEEEEEEEECCBC-
T ss_pred             EEeccccceEEEEEEEecc
Confidence            9999999998888888654

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.97  E-value=5e-31  Score=243.03  Aligned_cols=269  Identities=18%  Similarity=0.274  Sum_probs=177.4

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCcee---EecCCeEEEEEEccCCCC
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSY---SIQDGSTSVARYTPTSEL   80 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~---~~~~~~~~~l~i~~~~~~   80 (365)
                      +.+.+.++|....  .....+..|+.+.|.|.+.|+|.+ .++|++++.. +.......   .....  ..|     ...
T Consensus       133 ~~l~V~~~p~~~~--~~p~~~~~~~~~~L~C~a~G~P~P-~i~W~k~~~~-~~~~~~~~~~~~~~~~--~~l-----~~~  201 (423)
T 3qs7_E          133 FTVSIRNTLLYTL--RRPYFRKMENQDALVCISESVPEP-IVEWVLCDSQ-GESCKEESPAVVKKEE--KVL-----HEL  201 (423)
T ss_dssp             EEEEEC-----CE--EEEEEEECSSSSCEEEEEEESSCC-EEEEEEC--------------CEEECC--SEE-----CCC
T ss_pred             EEEEEecCccccc--cCCcEeccCCceEEEEEEeeecCC-eEEEEECCCC-Cccccccccccccccc--eEE-----ecc
Confidence            3445555565422  233345678999999999899999 9999999876 43211100   00111  011     567


Q ss_pred             CCeEEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeC
Q psy3823          81 EYGTLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHN  158 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~  158 (365)
                      |+|.|+|.|.|..|... ..+.|.|         ..+|..  .+    ....+.+|+.+.|.|.+.| .|.+. +.|+++
T Consensus       202 d~G~Y~C~A~N~~G~~~~~~~~l~V---------~~~p~~--~~----~~~~v~~G~~v~L~C~~~g~~p~p~-i~W~k~  265 (423)
T 3qs7_E          202 FGTDIRCCARNELGRECTRLFTIDL---------NQTPQT--TL----PQLFLKVGEPLWIRCKAVHVNHGFG-LTWELE  265 (423)
T ss_dssp             CSSCEEEEEECSSCEEEEECEEEES---------SSCCCS--ST----TEEEEETTSCEEEEEEEEESSSCCC-EEEEES
T ss_pred             cCeEEEEEEEcCCCCcceeeEEEEE---------ecCCcc--CC----CceEEeCCCeEEEEEEEEcCCCCcE-EEEEEC
Confidence            99999999999988765 4577777         333332  11    2346789999999999998 45566 999999


Q ss_pred             CeEEeeCCC--------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCc
Q psy3823         159 GITISNNAS--------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQ  230 (365)
Q Consensus       159 ~~~l~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~  230 (365)
                      +..+.....        ........+|.|.+++.+|+|.|+|.|.|.    .+..+.|.|.          .+|.+...+
T Consensus       266 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~----~~~~~~L~V~----------~~p~i~~~~  331 (423)
T 3qs7_E          266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIV----------EKGFINATN  331 (423)
T ss_dssp             SSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE----EEEEEEEEEE----------SSCEEEEC-
T ss_pred             CEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC----CCceEEEEEE----------eCCcceEcC
Confidence            987643211        111333567999999999999999999988    4467888998          777665322


Q ss_pred             -cceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823         231 -QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR  309 (365)
Q Consensus       231 -~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~  309 (365)
                       .....+.+|+.+.|.|.+.|.|.|. +.|+++|........   ...+. . .+.+.....+|+|.|+|.|.|..|..+
T Consensus       332 ~~~~~~v~~G~~v~l~C~~~g~P~p~-i~W~k~g~~l~~~~~---~~~~~-~-~~~~~~~~~~D~G~YtC~A~N~~G~~~  405 (423)
T 3qs7_E          332 SSEDYEIDQYEEFCFSVRFKAYPQIR-CTWTFSRKSFPCEQK---GLDNG-Y-SISKFCNHKHQPGEYIFHAENDDAQFT  405 (423)
T ss_dssp             --CEECCCTTCCCCEEEEEEEESCCE-EEEEETTEEEECBCC---BCSSS-S-EEEEECCCTTCCSCEEEEEEETTEEEE
T ss_pred             CCccEEecCCCeEEEEEEEEEcCCCe-EEEEECCEECCCccc---cccCC-c-EEEEEecccccCEEEEEEEEcCCceEE
Confidence             2344478999999999999999998 999999864322110   00011 1 122245677999999999999999999


Q ss_pred             ecEEEEEEcC
Q psy3823         310 TPCTFHVVKA  319 (365)
Q Consensus       310 ~~~~l~v~~~  319 (365)
                      .++.|.|...
T Consensus       406 ~s~~L~v~~~  415 (423)
T 3qs7_E          406 KMFTLNIRSG  415 (423)
T ss_dssp             EEEEEC----
T ss_pred             EEEEEEEecC
Confidence            9999988654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=218.58  Aligned_cols=237  Identities=18%  Similarity=0.297  Sum_probs=175.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      +....+.+|+.+.|.|.+.+.|.+..++|++++.. +...       +.   .|.|.+++.+|+|.|+|.+.+..+  ..
T Consensus         8 p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~-~~~~-------~~---~l~i~~~~~~d~G~Y~C~~~~~~~--s~   74 (262)
T 3rjd_A            8 PPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTA-TQTS-------TP---SYRITSASVNDSGEYRCQRGLSGR--SD   74 (262)
T ss_dssp             SCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEE-CSCC-------SS---EEEESSCCGGGCEEEEEEESSSCC--CC
T ss_pred             CCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEE-eecc-------CC---eEEEecCCcccCeEEEEEEecCCc--cc
Confidence            44456789999999999777776558999999987 5532       22   789999999999999999986543  35


Q ss_pred             cEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE-ecCCCCeeEEEeCCeEEeeCCCCceEEeeceE
Q psy3823          99 PCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ-ANPPYKKLIWTHNGITISNNASAGRIITNQTL  177 (365)
Q Consensus        99 ~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l  177 (365)
                      .+.|.|         ..+|. .+.+    ....+.+|+.+.|.|.+. +.|.+. +.|++++..+..      ...+..|
T Consensus        75 ~~~l~v---------~~~~~-~~~~----~~~~~~~g~~v~l~C~~~~~~p~~~-v~W~~~g~~~~~------~~~~~~l  133 (262)
T 3rjd_A           75 PIQLEI---------HRGWL-LLQV----SSRVFTEGEPLALRCHAWKDKLVYN-VLYYRNGKAFKF------FHWNSNL  133 (262)
T ss_dssp             CEEEEE---------ECSSE-EEEE----SCSEEETTSCEEEEEEEGGGCCCEE-EEEEETTEEEEE------EEECCCE
T ss_pred             cEEEEE---------eccce-EecC----CCeEEecCCeEEEEEEccCCCCCce-EEEEECCccccc------cCCCCeE
Confidence            677777         33443 3333    234678999999999995 555444 999999998853      2235789


Q ss_pred             EEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC-Cc-
Q psy3823         178 VLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ-AQ-  255 (365)
Q Consensus       178 ~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~-  255 (365)
                      .|.+++.+|+|.|+|.+.|..+... ..+.|.|...       ..+|.+.... . ..+..|+.+.|.|.+.+.|. +. 
T Consensus       134 ~i~~~~~~d~G~Y~C~~~n~~~~~~-~~~~l~V~~~-------~~~p~~~~~~-~-~~~~~g~~~~l~C~~~~~p~~p~~  203 (262)
T 3rjd_A          134 TILKTNISHNGTYHCSGMGKHRYTS-AGISVTVKEL-------FPAPVLNASV-T-SPLLEGNLVTLSCETKLLLQRPGL  203 (262)
T ss_dssp             EESSCCGGGCEEEEEEEESSSEEEE-ECEEEEEECS-------SCCCEEEESS-C-SSEETTCCEEEEEECCCCCC----
T ss_pred             EEEECChhhCEEEEEEEeCCCCccc-cceEEEeccC-------CCCCeEeecC-c-eeecCCCeEEEEeEcccCCCCCCc
Confidence            9999999999999999999885433 5677777711       0234443333 2 23789999999999999875 43 


Q ss_pred             --eeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         256 --YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       256 --~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                        .+.|++++....         .....+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       204 ~~~~~w~~~~~~~~---------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          204 QLYFSFYMGSKTLR---------GRNTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             -EEEEEEETTEEEE---------EEESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             cEEEEEEeCCcEec---------ccCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence              467888765321         11233469999999999999999999999975

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=230.47  Aligned_cols=269  Identities=16%  Similarity=0.186  Sum_probs=172.9

Q ss_pred             eeCCceEEEEecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCC---------CCceeEec-----CCeEEEEEEccCCC
Q psy3823          15 KQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPR---------PLTSYSIQ-----DGSTSVARYTPTSE   79 (365)
Q Consensus        15 ~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~---------~~~~~~~~-----~~~~~~l~i~~~~~   79 (365)
                      ....+..+.+.+|+.++|.|.+.+. |.+ .++|+|++.. ...         ........     ......|.|.+++.
T Consensus         6 v~~~p~~~~v~~G~~v~L~C~~~~~~p~~-~v~W~k~~~~-~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            6 VIQPDKSVSVAAGESAILHCTVTSLIPVG-PIQWFRGAGP-ARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCC-CEEEEESCST-TCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             EEcCCCceEEecCCcEEEEEEccCcCCCc-eEEEEECCCC-CceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            3344667889999999999997776 888 9999999864 320         00111100     12334799999999


Q ss_pred             CCCeEEEEEEEeCCCCCc-----ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCC-ee
Q psy3823          80 LEYGTLLCWARNEQGNQR-----TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYK-KL  153 (365)
Q Consensus        80 ~d~G~Y~C~a~~~~~~~~-----~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-~i  153 (365)
                      +|+|.|+|.+.+..+...     ..+.|.|...      ..+|.+.  .    +...+.+|+.+.|.|.+.+.|++. .+
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~------p~~p~i~--~----~~~~~~~g~~~~l~C~~~g~p~~~~~v  151 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAK------PSAPVVS--G----PAARATPQHTVSFTCESHGFSPRDITL  151 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBC------CCCCEEE--C----CSSCBCTTCEEEEEEEEEEEBSSCCEE
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEec------CCCceee--c----cccccCCCCEEEEEEEEeCccCCCcEE
Confidence            999999999999765421     4567777311      1223332  2    224678899999999999887663 59


Q ss_pred             EEEeCCeEEeeCC-------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCc--ccEEEEEeeeeecccccCCCC
Q psy3823         154 IWTHNGITISNNA-------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGS--TPFDLNINKMVNLIFNSIDEP  224 (365)
Q Consensus       154 ~W~~~~~~l~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s--~~~~l~v~~~~~~~~~~~~~p  224 (365)
                      .|+++|..+....       ..........|.|.....+|.|.|+|.+.|..+....  ....+.+.        ...+|
T Consensus       152 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~--------v~~~P  223 (327)
T 2wng_A          152 KWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET--------IRVPP  223 (327)
T ss_dssp             EEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT--------BCBCC
T ss_pred             EEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc--------cCCCC
Confidence            9999998885322       1111222346777777777889999999998775321  12222111        11566


Q ss_pred             ceecCccceeeeecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCC-CceeEeeCCC---EEEEEEcCCCcccCeEEEE
Q psy3823         225 VCKQSQQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRP-LTSYSIQDGS---TSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       225 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~-~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C  299 (365)
                      .+......   +.+|+.+.|.|.+.+.|++. .+.|+++|....... .......++.   .+.|.|..+..+|+|.|+|
T Consensus       224 ~i~~~~~~---~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C  300 (327)
T 2wng_A          224 TLEVTQQP---VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTC  300 (327)
T ss_dssp             EEEEEEEC---CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEE
T ss_pred             EEEEecCC---cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEE
Confidence            66543333   67899999999999965442 499999986432211 1111122332   2568899999999999999


Q ss_pred             EEEcCCccc
Q psy3823         300 WARNEQGSQ  308 (365)
Q Consensus       300 ~a~n~~g~~  308 (365)
                      .|.|..|..
T Consensus       301 ~a~N~~~~~  309 (327)
T 2wng_A          301 QVEHDGQPA  309 (327)
T ss_dssp             EEEETTCCC
T ss_pred             EEEeCCCCC
Confidence            999999875

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.97  E-value=3.5e-31  Score=232.15  Aligned_cols=272  Identities=17%  Similarity=0.151  Sum_probs=188.9

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      .+|.+. ..+..+.+.+|+.++|.|.+.+     .+.|++++.. ..     ..........|.|.+++.+|+|.|+|.+
T Consensus         3 ~~P~i~-~~~~~~~v~~G~~v~L~C~~~~-----~v~W~~~~~~-~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   70 (292)
T 4dkd_C            3 SIPVIE-PSVPELVVKPGATVTLRCVGNG-----SVEWDGPPSP-HW-----TLYSDGSSSILSTNNATFQNTGTYRCTE   70 (292)
T ss_dssp             -CCEEE-SCCSSCEECTTCCEEEEEECSS-----CCCBCCCCCS-SC-----EECCBTTEEEEEESSCCGGGCSCEEECC
T ss_pred             CCceec-CCCCeEEEcCCCcEEEEEcCCC-----ceEEccCCCC-ce-----EEeccCceEEEEEcccccccCEEEEEEE
Confidence            345543 3344567899999999999765     3899976543 11     2223344568999999999999999999


Q ss_pred             EeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC-CCeeEEEeC-CeEEeeCCC
Q psy3823          90 RNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP-YKKLIWTHN-GITISNNAS  167 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~~i~W~~~-~~~l~~~~~  167 (365)
                      .+..+.....+.|.|         ..+|.......   ....+.+|+.+.|.|.+.+.+. +. +.|+++ +..+.. ..
T Consensus        71 ~n~~~~~~~~~~l~V---------~~~~~~~~~~~---~~~~v~~g~~v~l~C~~~~~~~~~~-v~W~~~~~~~~~~-~~  136 (292)
T 4dkd_C           71 PGDPLGGSAAIHLYV---------KDPARPWNVLA---QEVVVFEDQDALLPCLLTDPVLEAG-VSLVRVRGRPLMR-HT  136 (292)
T ss_dssp             CC----CCEEECCEE---------CCSSCCEEESC---SEEEEETTSCEECCEEESSGGGGSS-EEEEEGGGCCCCS-SC
T ss_pred             ccCCCCcceEEEEEE---------cCccccccccC---CeEEEcCCCcEEEeeeCCCCCccee-EEEEecCCCcccc-CC
Confidence            998877778888888         44554322222   3346889999999999987332 44 999997 444432 21


Q ss_pred             CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCC----CCceecCccceeeeecCceEE
Q psy3823         168 AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSID----EPVCKQSQQRIYGALRNEQVL  243 (365)
Q Consensus       168 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~----~p~~~~~~~~~~~~~~g~~~~  243 (365)
                      ......+..|.|.++...|+|.|+|.+.|..+...+..+.|.|.          .    +|.+...+.... +..|+.+.
T Consensus       137 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~----------~~~~~~p~i~~~~~~~~-~~~g~~v~  205 (292)
T 4dkd_C          137 NYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ----------KVIPGPPALTLVPAELV-RIRGEAAQ  205 (292)
T ss_dssp             CEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEE----------CCCCSSCEEEEESSCBC-CCSSSCEE
T ss_pred             cccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEe----------CCCCCCCeEEccCCcee-EecCCCEE
Confidence            22222355699999999999999999998877665567888888          5    666654443322 67999999


Q ss_pred             EEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeC--CCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         244 VSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQD--GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       244 l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      |.|.+.+.|++..+.|++++...... ........  ...+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       206 l~C~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  282 (292)
T 4dkd_C          206 IVCSASSVDVNFDVFLQHNNTKLAIP-QQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES  282 (292)
T ss_dssp             EEEEEEESSSCCEEECCBSSCCCCCC-BEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred             EEEEecCCCCceEEEEeCCCcccccC-ccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeC
Confidence            99999987754447787876543221 11111111  12357999999999999999999999999999888888654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.97  E-value=6.5e-31  Score=248.59  Aligned_cols=274  Identities=18%  Similarity=0.236  Sum_probs=190.6

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-c
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-T   98 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~   98 (365)
                      ..+....|+.+.|.|.+.++|.+ .++|++++.. +......   ... ........+...|+|.|+|.|.|..|... .
T Consensus       147 ~p~~~~~~~~~~L~C~a~G~P~P-~i~W~~~~~~-~~~~~~~---~~~-~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~  220 (527)
T 3qs9_E          147 RPYFRKMENQDALVCISESVPEP-IVEWVLCDSQ-GESCKEE---SPA-VVKKEEKVLHELFGTDIRCCARNELGRECTR  220 (527)
T ss_dssp             EEEEEECSSSSCEEEEEEESSCC-EEEEEEC------------------CEEECCSEECCCCSSCEEEEEECSSCEEEEE
T ss_pred             CCcEEecCCceEEEEEEceecCC-eEEEEECCCC-Ccccccc---CCc-EEEEeeeeccccCCEEEEEEEEeCCCcccce
Confidence            34445678889999999999999 9999998876 4321110   011 01122233457899999999999988766 4


Q ss_pred             cEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE-ecCCCCeeEEEeCCeEEeeCCC--------Cc
Q psy3823          99 PCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ-ANPPYKKLIWTHNGITISNNAS--------AG  169 (365)
Q Consensus        99 ~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~~~~l~~~~~--------~~  169 (365)
                      .+.|.|         ..+|.+   +.   ....+.+|+.+.|.|.+. +.|.+. +.|++++..+.....        ..
T Consensus       221 ~~~l~V---------~~~p~~---~p---~~~~v~~G~~v~L~C~~~~g~p~p~-i~W~k~g~~l~~~~~~~~~~~~~~~  284 (527)
T 3qs9_E          221 LFTIDL---------NQTPQT---TL---PQLFLKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNR  284 (527)
T ss_dssp             CEEEES---------SSCCCC---SC---CEEEECTTSCEEEEEEEEESSSCCC-EEEECSSSCCCGGGEEEEEEEETTT
T ss_pred             EEEEEE---------eccCcc---CC---CceEEeCCCeEEEEEEEccCCCCeE-EEEEECCEECCCCceeeeeeeccCc
Confidence            477877         444443   11   334678999999999997 777777 999999987653211        11


Q ss_pred             eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCc-cceeeeecCceEEEEEEE
Q psy3823         170 RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQ-QRIYGALRNEQVLVSCTV  248 (365)
Q Consensus       170 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~~l~C~~  248 (365)
                      ......+|.|.+++.+|+|.|+|.|.|.    .+..+.|.|.          .+|.+.... .....+..|+.+.|.|.+
T Consensus       285 ~~~~~~~L~I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~----------~~p~i~~~~~~~~~~v~~G~~v~L~C~~  350 (527)
T 3qs9_E          285 TMIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIV----------EKGFINATNSSEDYEIDQYEEFCFSVRF  350 (527)
T ss_dssp             EEEEEEEEEESSCCGGGCEEEEEEETTE----EEEEEEEEEC------------CEEECCCSCCEECCCTTCCCCEEEEE
T ss_pred             ceeeEEEEEEccCCcccCeEEEEEEEeC----CCceEEEEEE----------ccCccccccCcccEEEcCCCeEEEEEEE
Confidence            1233467999999999999999999988    3467788888          667654322 223447899999999999


Q ss_pred             eeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc-------
Q psy3823         249 DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE-------  321 (365)
Q Consensus       249 ~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~-------  321 (365)
                      .|.|.|. +.|+++|........ .  ..  ....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..++.       
T Consensus       351 ~g~P~p~-i~W~k~g~~l~~~~~-~--~~--~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~~~  424 (527)
T 3qs9_E          351 KAYPQIR-CTWTFSRKSFPCEQK-G--LD--NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASA  424 (527)
T ss_dssp             EEESCCE-EEEEETTEEEECBCC-B--CS--SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECCCC
T ss_pred             EecCCCE-EEEEECCEECcCCcc-c--cc--CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeCCC
Confidence            9999998 999998864322111 1  11  123588999999999999999999999999888888875544       


Q ss_pred             ----ccccCccccEEEEE
Q psy3823         322 ----CEHPVAVSHRYVAK  335 (365)
Q Consensus       322 ----c~~~l~~~~~~~~~  335 (365)
                          |.+.-.|...+.|+
T Consensus       425 ~~l~C~a~g~P~p~i~W~  442 (527)
T 3qs9_E          425 SQASCFSDGYPLPSWTWK  442 (527)
T ss_dssp             E---EEEECSSCCEEEEE
T ss_pred             CEEEEEEEEEcCCeEEEE
Confidence                77755666666664

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=3.8e-32  Score=243.64  Aligned_cols=278  Identities=16%  Similarity=0.254  Sum_probs=195.5

Q ss_pred             CceEEEEecCCcEEEEEEeC-------CCCCcceEEEEeCCCcCCCCCC--c-eeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVD-------ANPQAQYFTWAFNNSGTAPRPL--T-SYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~-------~~p~~~~v~W~~~~~~~l~~~~--~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      .+..+.+.+|+.+.|.|.+.       +.|.+ .+.|++++.. +....  . .....++   .|.|.+++.+|+|.|+|
T Consensus        24 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C   98 (339)
T 3o4o_C           24 HYKREFRLEGEPVALRCPQVPYWLWASVSPRI-NLTWHKNDSA-RTVPGEEETRMWAQDG---ALWLLPALQEDSGTYVC   98 (339)
T ss_dssp             CSCCEEEETTBCCEEECTTSCSSCCSTTSSCC-BCCCEESSCC-SCCSCCSSSCEEEETT---EEEESSBCTTCCEEEEC
T ss_pred             CceEEEEECCccEEEEeccccccccccCCCCc-eEEEEECCCC-cccCccccccEEeeCC---eEEECCCCcccCEEEEE
Confidence            44567789999999999976       88888 9999999876 32211  1 1223344   79999999999999999


Q ss_pred             EEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEE-----EEecCCCCeeEEEeCCeEE
Q psy3823          88 WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH-----IQANPPYKKLIWTHNGITI  162 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~-----~~~~p~~~~i~W~~~~~~l  162 (365)
                      .+.+..+.....+.|.|.         .+|........  ....+.+|+.+.|.|.     +.+.|.+. +.|+++|..+
T Consensus        99 ~~~n~~g~~~~~~~l~V~---------~~~~~~~~~~~--~~~~~~~g~~v~l~C~~~~~~~~g~p~~~-v~W~k~g~~~  166 (339)
T 3o4o_C           99 TTRNASYCDKMSIELRVF---------ENTDAFLPFIS--YPQILTLSTSGVLVCPDLSEFTRDKTDVK-IQWYKDSLLL  166 (339)
T ss_dssp             CEEETTEEEEEEEEEEEE---------CSCGGGHHHHC--EEEEEETTSCEEEECCSCTTTCCSSSCCC-BCCEESSCBC
T ss_pred             EEECCcceEEEEEEEEEE---------cCCCccccccc--cceEEECCCCEEEEecCCcccccCCCCce-EEEecCCeeC
Confidence            999988777788888883         23221000000  1135778999999999     77888887 9999999888


Q ss_pred             eeCCCCceEEe-eceEEEeeecCCCCeEEEEEEEcCCCCC---CcccEEEEEeeeeecccccCCCCceecCccceeeeec
Q psy3823         163 SNNASAGRIIT-NQTLVLQSVTRHSGGLYACSAINSQGEG---GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR  238 (365)
Q Consensus       163 ~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~~~~~~~~~---~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~  238 (365)
                      ........... ...|.|.+++.+|+|.|+|.+.|..|..   .+..+.|.|....     ...+|.+.... ....+..
T Consensus       167 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~-----~~~~P~i~~~~-~~~~v~~  240 (339)
T 3o4o_C          167 DKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK-----EETIPVIISPL-KTISASL  240 (339)
T ss_dssp             CTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC-----CCCCCEECCCS-CCCCCCC
T ss_pred             CCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC-----CCCCCEEecCC-ceeEecc
Confidence            65433222222 3589999999999999999999987642   2355667776110     00244554443 3334789


Q ss_pred             CceEEEEEEE---eeeC-CCceeEEEeCCCCCCCCCC--------ceeEeeCCC---EEEEEEcCCCcccC-eEEEEEEE
Q psy3823         239 NEQVLVSCTV---DANP-QAQYFTWAFNNSDTAPRPL--------TSYSIQDGS---TSVARYTPTSELEY-GTLLCWAR  302 (365)
Q Consensus       239 g~~~~l~C~~---~~~p-~~~~~~W~~~~~~~~~~~~--------~~~~~~~~~---~s~l~i~~v~~~d~-G~Y~C~a~  302 (365)
                      |+.+.|.|.+   .+.| .+. +.|+++|........        ......++.   .+.|.|.+++.+|. |.|+|.|.
T Consensus       241 G~~v~L~C~~~~~~g~P~~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~  319 (339)
T 3o4o_C          241 GSRLTIPCKVFLGTGTPLTTM-LWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVH  319 (339)
T ss_dssp             CSCCCCCCCEEESSSCCSSCE-EEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEE
T ss_pred             CCCEEEEEEEECCCCCCCCce-EEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEE
Confidence            9999999999   8888 666 999998865432111        111122332   23699999999997 99999999


Q ss_pred             cCCccceecEEEEEEcC
Q psy3823         303 NEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       303 n~~g~~~~~~~l~v~~~  319 (365)
                      |..|..+..+.+.+.++
T Consensus       320 N~~G~~~~~~~~~~~~~  336 (339)
T 3o4o_C          320 NTLSFQTLRTTVKEHHH  336 (339)
T ss_dssp             ETTEEECCBCCCCC---
T ss_pred             eccCceEEEEEhhHhcc
Confidence            99999998887766543

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.97  E-value=3e-30  Score=233.62  Aligned_cols=251  Identities=12%  Similarity=0.115  Sum_probs=182.3

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCC-CC----------CCceeEe--c---CCeEEEEEEccCCCCCCe
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTA-PR----------PLTSYSI--Q---DGSTSVARYTPTSELEYG   83 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l-~~----------~~~~~~~--~---~~~~~~l~i~~~~~~d~G   83 (365)
                      ..+.+.+|+.++|.|.+.+.|.+ .+.|+|++...+ ..          ....+..  .   ......|.|.+++.+|+|
T Consensus         2 e~v~~~~G~~v~L~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G   80 (363)
T 1wio_A            2 KVVLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD   80 (363)
T ss_dssp             EEEEEETTSCEEECCCCTTCSSC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCE
T ss_pred             CeEEEeCCCeEEEEEEecCCCce-EEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCE
Confidence            35678999999999998788888 999999985411 10          0001110  0   112347999999999999


Q ss_pred             EEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEe
Q psy3823          84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITIS  163 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~  163 (365)
                      .|+|.+.+..    ..+.|.|.         .   +.+.     +...+.+|+++.|.|.+.+.|.+. +.|++++..+ 
T Consensus        81 ~Y~C~~~n~~----~~~~l~V~---------~---~~~~-----~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~-  137 (363)
T 1wio_A           81 TYICEVEDQK----EEVQLLVF---------G---LTAN-----SDTHLLQGQSLTLTLESPPGSSPS-VQCRSPRGKN-  137 (363)
T ss_dssp             EEEEEETTEE----EEEEEEEE---------E---EEES-----SCSSEESBSCEEEEEECCTTCCCC-EEEECSSSCE-
T ss_pred             EEEEEEEECC----CcEEEEEE---------e---CCCC-----CceEEecCCCEEEEEEcCCCCCCe-EEEEcCCCcc-
Confidence            9999998763    36777772         1   1222     123578999999999999888776 9999987654 


Q ss_pred             eCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEE
Q psy3823         164 NNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVL  243 (365)
Q Consensus       164 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~  243 (365)
                             ......|.|.+++.+|+|.|+|.+.+..+... ..+.+.|.          ..|...    ....+.+|+.+.
T Consensus       138 -------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~-~~~~l~v~----------~~p~~~----~~~~~~~G~~v~  195 (363)
T 1wio_A          138 -------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE-FKIDIVVL----------AFQKAS----SIVYKKEGEQVE  195 (363)
T ss_dssp             -------EEESSEEEECSBCGGGCEECEEEEEETTEEEE-ECCEECEE----------CCSCSE----EEEEEETBCCEE
T ss_pred             -------cccceEEEEeeCChhcCCEEEEEEecCCCeEE-EEEEEEEe----------cCCCCC----CceEEecCCEEE
Confidence                   23467899999999999999999998754332 44566666          455432    233378899999


Q ss_pred             EEEEEee-----eCCCceeEEEeCCCCCCCC-------CCceeEee----------CCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         244 VSCTVDA-----NPQAQYFTWAFNNSDTAPR-------PLTSYSIQ----------DGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       244 l~C~~~~-----~p~~~~~~W~~~~~~~~~~-------~~~~~~~~----------~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      |.|.+.+     .|.+. +.|+++|......       .....+..          ......|.|.+++.+|+|.|+|.|
T Consensus       196 l~C~~~~~~~~~~P~p~-i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  274 (363)
T 1wio_A          196 FSFPLAFTVEKLTGSGE-LWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTL  274 (363)
T ss_dssp             EECCCCCCCCSSCEEEE-EEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEE
T ss_pred             EEEEEecccccCCCcee-EEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEE
Confidence            9998877     67777 9999998754432       22222211          222346999999999999999999


Q ss_pred             EcC--CccceecEEEEEE
Q psy3823         302 RNE--QGSQRTPCTFHVV  317 (365)
Q Consensus       302 ~n~--~g~~~~~~~l~v~  317 (365)
                      .|.  .|..+..+.|.|.
T Consensus       275 ~n~~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          275 ALEAKTGKLHQEVNLVVM  292 (363)
T ss_dssp             CBTTTTCCEEEEEEEEEE
T ss_pred             EEhhhcCeEEEEEeEEEE
Confidence            999  9998888888876

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.97  E-value=6.9e-30  Score=254.95  Aligned_cols=280  Identities=20%  Similarity=0.277  Sum_probs=208.4

Q ss_pred             EeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCC-CCCCe
Q psy3823           5 IFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTS-ELEYG   83 (365)
Q Consensus         5 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~-~~d~G   83 (365)
                      .+.+...|....  .....+.+|+.++|.|.+.+.|.+ .+.|++++.. +..........++   .|.|.++. .+|+|
T Consensus       521 ~l~V~~~p~~~~--~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~k~~~~-l~~~~~~~~~~~~---~l~i~~v~~~~d~G  593 (816)
T 3dmk_A          521 KLNVYGLPYIRQ--MEKKAIVAGETLIVTCPVAGYPID-SIVWERDNRA-LPINRKQKVFPNG---TLIIENVERNSDQA  593 (816)
T ss_dssp             EEEECSSCEECC--CCCEEEETTCCEEEECCEECSSEE-EEEEEETTEE-SCCSTTEEECTTS---EEEESSCCHHHHCE
T ss_pred             EEEEecCCeeEc--cCCeEEecCCeEEEEEEecCCCCC-EEEEEECCeE-cccCCceEEecCC---eEEEEecCccccCE
Confidence            455566665433  233557899999999998888988 9999999988 7655554444555   79999998 68999


Q ss_pred             EEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEE
Q psy3823          84 TLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITI  162 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l  162 (365)
                      .|+|.|.|..|... ..+.+.|         ..+|.+.....   ....+.+|+.++|.|.+.+.+++..+.|+++|..+
T Consensus       594 ~Y~C~a~n~~g~~~~~~~~v~v---------~~~p~~~~~~~---~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l  661 (816)
T 3dmk_A          594 TYTCVAKNQEGYSARGSLEVQV---------MVLPRIIPFAF---EEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI  661 (816)
T ss_dssp             EEEEEEEESSSCEEEEEEEEEE---------ECCCCCBCCCC---CSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCC
T ss_pred             EEEEEEEECCCceeeeeEEEEE---------ecCCccccccc---cccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEc
Confidence            99999999887543 5667776         34444321111   23457899999999999877777569999999988


Q ss_pred             eeCCCCceEE---eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecC
Q psy3823         163 SNNASAGRII---TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN  239 (365)
Q Consensus       163 ~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g  239 (365)
                      ..........   ....|.|.++...|+|.|+|.|.|..|... ..+.|.|.          .+|.+...+.. ..+..|
T Consensus       662 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~----------~~P~~~~~~~~-~~v~~G  729 (816)
T 3dmk_A          662 SEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ-FTTPLNVY----------VPPRWILEPTD-KAFAQG  729 (816)
T ss_dssp             CGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEE-EEEEECEE----------EEEEEEECCCC-EEEETT
T ss_pred             CCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEE-EEEEEEEE----------eCCceeeeccc-ceecCC
Confidence            5433322221   146799999999999999999999988665 56788888          77776654433 337899


Q ss_pred             ceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC-----ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL-----TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       240 ~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      +.+.|.|.+.|.|.|. +.|++++........     ......++   .|.|.+++.+|+|.|+|.|.|..|....++.+
T Consensus       730 ~~v~l~C~~~g~P~p~-i~W~k~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~  805 (816)
T 3dmk_A          730 SDAKVECKADGFPKPQ-VTWKKAVGDTPGEYKDLKKSDNIRVEEG---TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM  805 (816)
T ss_dssp             CCEEEECEEEEESCCE-EECCEECSSSTTCCBCCCCBTTEEEETT---EEEECSCCGGGCEEEEEEEECSSSSCEEEEEE
T ss_pred             CcEEEEEEEecCCCCe-EEEEecCCCCCccccccccCCCEEecCC---EEEECcCChhhCeEEEEEEEeCCCCCcEEEEE
Confidence            9999999999999998 999998753221110     01111222   59999999999999999999999999988888


Q ss_pred             EEEcC
Q psy3823         315 HVVKA  319 (365)
Q Consensus       315 ~v~~~  319 (365)
                      ....+
T Consensus       806 ~~~~~  810 (816)
T 3dmk_A          806 ISVQA  810 (816)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            76543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=9.5e-29  Score=234.56  Aligned_cols=280  Identities=15%  Similarity=0.190  Sum_probs=186.8

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc-CCC------------CCCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-TAP------------RPLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~-~l~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      ++....+.+|+.++|.|.+.+.|.+ .+.|+|++.. .+.            ...+......+....|.|.+++.+|+|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   84 (523)
T 2rcj_C            6 QPPSASGTPGQRVTISCTGTSSGSI-TVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESD   84 (523)
T ss_pred             cCCceEEecCCcEEEEEEEeccCCc-eEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEE
Confidence            3556788999999999998788888 9999997521 011            0011112233445689999999999999


Q ss_pred             EEEEEEeCCCCC---cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC-CeeEEEeCCe
Q psy3823          85 LLCWARNEQGNQ---RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY-KKLIWTHNGI  160 (365)
Q Consensus        85 Y~C~a~~~~~~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~i~W~~~~~  160 (365)
                      |+|.|.+..+..   ...+.|.|...     +..+|.+.+.+..    ..+.+|+.+.|.|.+.+.+++ ..+.|++||.
T Consensus        85 Y~C~a~n~~g~~~~~~~~~~l~V~~~-----~~~~P~~~~~~~~----~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~  155 (523)
T 2rcj_C           85 YYCASWNSSDNSYVFGTGTKVTVLGQ-----PKANPTVTLFPPS----SEELQANKATLVCLISDFYPGAVTVAWKADGS  155 (523)
T ss_pred             EEEEEccCCCccccccCceEEEeccC-----CCcCCeEEecCCc----ccccCCCceEEEEEeccccCCceEEEEecCCC
Confidence            999999876532   25567777211     1235665554422    345679999999999987765 3599999998


Q ss_pred             EEeeCCCC--------ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccc
Q psy3823         161 TISNNASA--------GRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQR  232 (365)
Q Consensus       161 ~l~~~~~~--------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~  232 (365)
                      .+......        +.......|.|.++..+|+|.|+|.|.|..+... ..+.+.+..      ....+|.+......
T Consensus       156 ~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~-~~~~~~~~~------~~~~~P~v~~~~~~  228 (523)
T 2rcj_C          156 PVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE-KTVAPTECS------ASTKGPSVFPLAPS  228 (523)
T ss_pred             CCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccc-cceeeeecC------CCCcCCEEEecCCC
Confidence            87532111        1111134699999999999999999999887544 333332210      01145555422222


Q ss_pred             eeeeecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         233 IYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       233 ~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                       ..+..|+.+.|.|.+.+. |.|..+.|+++|..............++.   .+.|.|.++..+| |.|+|.|.|..|..
T Consensus       229 -~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~  306 (523)
T 2rcj_C          229 -SKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  306 (523)
T ss_pred             -cccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCc
Confidence             126789999999999886 76723999999864321111111112222   3579999999999 99999999999987


Q ss_pred             eecEEEEE
Q psy3823         309 RTPCTFHV  316 (365)
Q Consensus       309 ~~~~~l~v  316 (365)
                      .....|.|
T Consensus       307 ~~~~~l~v  314 (523)
T 2rcj_C          307 KVDKRVEP  314 (523)
T ss_pred             ceEEecCC
Confidence            66555543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.97  E-value=3.3e-29  Score=222.40  Aligned_cols=265  Identities=14%  Similarity=0.209  Sum_probs=172.2

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC-----CC
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG-----NQ   96 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~-----~~   96 (365)
                      ..+.+|+.++|.|.+.+. .+ .+.|+|++.. +..... ......   .|.|.+++.+|+|.|+|.|.+..+     ..
T Consensus        33 ~~v~~G~~v~L~C~~~~~-~~-~~~W~k~g~~-~~~~~~-~~~~~~---~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~  105 (316)
T 3vh8_G           33 AVVPRGGHVTLRCHYRHR-FN-NFMLYKEDRI-HIPIFH-GRIFQE---SFNMSPVTTAHAGNYTCRGSHPHSPTGWSAP  105 (316)
T ss_dssp             SEEETTSCEEEEEEBTTB-CC-SEEEEESSCS-SSCHHH-HCCBSS---CEEECSCCGGGCEEEEEEEBCSSSSSSBCCC
T ss_pred             CccCCCCCEEEEEEccCC-Cc-eEEEEeCCCc-cceeec-CCcceE---EEEECCCCcccCeEEEEEEEcCCCCcceecC
Confidence            357899999999997776 56 8999999987 443211 111223   799999999999999999986432     22


Q ss_pred             cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCce---EEe
Q psy3823          97 RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR---IIT  173 (365)
Q Consensus        97 ~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~---~~~  173 (365)
                      ...+.|.|...      ..+|.+...+.     ..+.+|+.++|.|.+.+ +++. +.|++++..+........   ...
T Consensus       106 s~~~~l~V~~~------~~~p~~~~~~~-----~~v~~G~~v~L~C~~~~-~~~~-~~w~k~g~~~~~~~~~~~~~~~~~  172 (316)
T 3vh8_G          106 SNPVVIMVTGN------HRKPSLLAHPG-----PLVKSGERVILQCWSDI-MFEH-FFLHKEGISKDPSRLVGQIHDGVS  172 (316)
T ss_dssp             CCCEEEEEECS------SCCCEEEEESC-----SEEETTCCEEEEEEESS-CCSE-EEEEETTCCSCCEEEECEEETTEE
T ss_pred             CCcEEEEEecC------CCCCeEEecCC-----CccCCCCeEEEEEcCCC-CCcE-EEEEECCCccccceeeeeecCCCc
Confidence            36677777321      23566655432     24789999999999854 4444 999999876632111111   123


Q ss_pred             eceEEEeeecCCCCeEEEEEEEcCCCCC----CcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEe
Q psy3823         174 NQTLVLQSVTRHSGGLYACSAINSQGEG----GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD  249 (365)
Q Consensus       174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  249 (365)
                      ...|.|.+++.+|+|.|+|.+.|..+..    .+..+.|.|..       ...+|.+...+..  .+.+|+.++|.|.+.
T Consensus       173 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~-------~~~~p~i~~~~~~--~v~~G~~v~L~C~~~  243 (316)
T 3vh8_G          173 KANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG-------PYEKPSLSAQPGP--KVQAGESVTLSCSSR  243 (316)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC-------SSCCCEEEEESCS--CCCTTSCCEEEEEES
T ss_pred             eEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC-------CCCCCeEEeCCCC--eecCCCcEEEEEECC
Confidence            5689999999999999999999987742    24567777761       1134555433322  278999999999997


Q ss_pred             eeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc-----ceecEEEEEEcC
Q psy3823         250 ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS-----QRTPCTFHVVKA  319 (365)
Q Consensus       250 ~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~-----~~~~~~l~v~~~  319 (365)
                       .|.+. +.|+++|....................|.|.+++  |+|.|+|.|.|..+.     .+.++.|.|..+
T Consensus       244 -~~~~~-~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  314 (316)
T 3vh8_G          244 -SSYDM-YHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGN  314 (316)
T ss_dssp             -SCCSE-EEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC-----
T ss_pred             -CCCcE-EEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCC
Confidence             46676 9999998754321111111112233679999998  999999999997763     456666666543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.97  E-value=3.5e-29  Score=219.17  Aligned_cols=263  Identities=12%  Similarity=0.164  Sum_probs=173.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEe-cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      ...+.+.+|++++|.|.+.+.     ++|++++.. +..  ..... .......|.|.+++.+|+|.|+|.|.|..|...
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~-----v~W~~~~~~-~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~   78 (289)
T 3mjg_X            7 GPELVLNVSSTFVLTCSGSAP-----VVWERMSQE-PPQ--EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLET   78 (289)
T ss_dssp             CSEEECCTTCCEEEEEEESSC-----CEEEBTTBC-CSE--EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------
T ss_pred             CCeEEEeCCCcEEEEEeccce-----EEEECCCCC-ccc--ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCc
Confidence            345678999999999997653     899999988 631  11111 222346899999999999999999998887622


Q ss_pred             ---ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCC--eEEeeCCCCceEE
Q psy3823          98 ---TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNG--ITISNNASAGRII  172 (365)
Q Consensus        98 ---~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~--~~l~~~~~~~~~~  172 (365)
                         ..+.|.|         ..++...+..........+.+|+.+.|.|.+. .|.+. +.|++++  ..+..     ...
T Consensus        79 ~~~~~~~v~v---------~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~-v~w~~~~~~~~~~~-----~~~  142 (289)
T 3mjg_X           79 DERKRLYIFV---------PDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLV-VTLHEKKGDVALPV-----PYD  142 (289)
T ss_dssp             CCCEEEEEEC---------CCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSC-EEEEESSCCSCCCC-----CEE
T ss_pred             CcEEeEEEEE---------ECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCce-EEEEeCCCCCccce-----eec
Confidence               3444444         11111111110000013478899999999998 56666 9999854  33321     001


Q ss_pred             eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeC
Q psy3823         173 TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP  252 (365)
Q Consensus       173 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p  252 (365)
                      ....+.    ...|+|.|+|.+.|..+...+..+.+.+...        .+|.+...+.. ..+..|+.+.|.|.+.+.|
T Consensus       143 ~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~--------~~p~i~~~~~~-~~v~~G~~v~L~C~~~g~p  209 (289)
T 3mjg_X          143 HQRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV--------SSINVSVNAVQ-TVVRQGENITLMCIVIGNE  209 (289)
T ss_dssp             TTTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCC--------CCCCCEEEESC-SEEETTSCEEEEEEEESCS
T ss_pred             CCcCee----eeccCcEEEEEEEeCCceeeeeeEEEEecCC--------CCCCcEEeCCc-ceeEcCCCEEEEEEECCCC
Confidence            111111    3579999999999887765556667777610        24544433333 3388999999999999999


Q ss_pred             CCceeEEEeCCCCCCCCCCceeEee----CCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         253 QAQYFTWAFNNSDTAPRPLTSYSIQ----DGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       253 ~~~~~~W~~~~~~~~~~~~~~~~~~----~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      .+. +.|++++..............    ....+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       210 ~p~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~  279 (289)
T 3mjg_X          210 VVN-FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVV  279 (289)
T ss_dssp             SBE-EEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred             Ccc-eEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEE
Confidence            998 999987764322222111111    224567999999999999999999999999999999988754

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=1.3e-28  Score=233.68  Aligned_cols=272  Identities=12%  Similarity=0.123  Sum_probs=183.1

Q ss_pred             EEEecCCcEEEEEEeCCCCCc-ceEEEEeCCCcCCCCCCcee---EecCCe---EEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          22 YGALRNEQVLVSCTVDANPQA-QYFTWAFNNSGTAPRPLTSY---SIQDGS---TSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~~~~l~~~~~~~---~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ..+.+|+.++|.|.+.+.|++ ..++|++++.. +.......   ...++.   .+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       124 ~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~-l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  202 (523)
T 2rcj_C          124 SEELQANKATLVCLISDFYPGAVTVAWKADGSP-VKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  202 (523)
T ss_pred             ccccCCCceEEEEEeccccCCceEEEEecCCCC-CCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCc
Confidence            345689999999997776653 39999999988 65433211   112222   24799999999999999999999888


Q ss_pred             CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEEeCCeEEeeCCCCc----
Q psy3823          95 NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWTHNGITISNNASAG----  169 (365)
Q Consensus        95 ~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~~~~----  169 (365)
                      .....+.+.+..     ....+|.+....    ....+.+|+.+.|.|.+.|. |.+..|.|+++|..+.......    
T Consensus       203 ~~~~~~~~~~~~-----~~~~~P~v~~~~----~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~  273 (523)
T 2rcj_C          203 TVEKTVAPTECS-----ASTKGPSVFPLA----PSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQS  273 (523)
T ss_pred             ccccceeeeecC-----CCCcCCEEEecC----CCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecC
Confidence            766555544310     113456554222    12346789999999999986 6664599999998754211111    


Q ss_pred             --eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCcccee-eeecCceEEEEE
Q psy3823         170 --RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIY-GALRNEQVLVSC  246 (365)
Q Consensus       170 --~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~-~~~~g~~~~l~C  246 (365)
                        .......|.|.++..+| |.|+|.|.|..|... ....+.+.          ..|.+........ .+..|+.+.|.|
T Consensus       274 ~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~-~~~~l~v~----------~~P~~~~~~p~~~~~v~~g~~~~l~C  341 (523)
T 2rcj_C          274 SGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK-VDKRVEPL----------SLPSVFLFPPKPKDTLMISRTPEVTC  341 (523)
T ss_pred             CCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcc-eEEecCCC----------cCceEEecCCCchhhcccCCceEEEE
Confidence              11124589999999999 999999999988754 44555555          4455432221111 267899999999


Q ss_pred             EEeeeCCC---ceeEEEeCCCCCCCCCCcee-EeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         247 TVDANPQA---QYFTWAFNNSDTAPRPLTSY-SIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       247 ~~~~~p~~---~~~~W~~~~~~~~~~~~~~~-~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      .+.|.|++   ..+.|+++|........... ...++.   .+.|.|..+..+|+|.|+|.|.|..+.......+.
T Consensus       342 ~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~  417 (523)
T 2rcj_C          342 VVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTIS  417 (523)
T ss_pred             EEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEE
Confidence            99987543   14999999875433221111 122222   35689999999999999999999988765444444

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.97  E-value=1.1e-27  Score=222.17  Aligned_cols=297  Identities=13%  Similarity=0.134  Sum_probs=191.9

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCc---ceEEEEeCC--CcCCC------------CCCceeEecCCeEEEEEEccCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQA---QYFTWAFNN--SGTAP------------RPLTSYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~---~~v~W~~~~--~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      +..+.+.+|+.++|.|.+.+.|.+   ..+.|+|++  .. +.            ...+......+....|.|.+++.+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   86 (438)
T 1qgc_4            8 PASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQP-PKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADD   86 (438)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSC-CEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCC-cEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcC
Confidence            456778999999999998777752   289999974  21 10            0112122223445689999999999


Q ss_pred             CeEEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCC
Q psy3823          82 YGTLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNG  159 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~  159 (365)
                      +|.|+|.|.+..+... ....|.|...      ..+|.+.+.+..    ....+|+.+.|.|.+.+ .|.+..+.|+++|
T Consensus        87 ~G~Y~C~a~n~~~~~~~~~~~l~V~~~------~~~P~v~~~~~~----~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g  156 (438)
T 1qgc_4           87 VATYYCQQSNEVPLTFGAGTKLDLKRA------DAAPTVSIFPPS----SEQLTSGGASVVCFLNNFYPKDINVKWKIDG  156 (438)
T ss_dssp             CEEEEEEECSSTTCCBCCCEEEEECCC------CBCCEEEEECCC----HHHHHTTEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             CeeEEEEEecCCCccccCceeEEecCC------CCCCEEEecCCC----hhhccCCceEEEEEEccccCCCcEEEEEECC
Confidence            9999999998876442 5677777211      236776654322    23446889999999987 5666359999999


Q ss_pred             eEEeeCC---------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCc
Q psy3823         160 ITISNNA---------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQ  230 (365)
Q Consensus       160 ~~l~~~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~  230 (365)
                      ..+....         ..+.......|.|.++..+|+|.|+|.|.|..+..   .+.+.+..       ....+.+.. +
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~-------~~~~~~~~~-~  225 (438)
T 1qgc_4          157 SERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS---PIVKSFNR-------NECEVMLVE-S  225 (438)
T ss_dssp             EEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS---CEEEEEET-------TC-CCEEEE-E
T ss_pred             EEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC---ceeccccc-------ccceeEEec-C
Confidence            9886430         11122224589999999999999999999987754   23344430       001122222 2


Q ss_pred             cceeeeecCceEEEEEEEeeeC--CCceeEEEeC--CCCCC----------------CCCCceeEee--CCCEEEEEEcC
Q psy3823         231 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFN--NSDTA----------------PRPLTSYSIQ--DGSTSVARYTP  288 (365)
Q Consensus       231 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~~W~~~--~~~~~----------------~~~~~~~~~~--~~~~s~l~i~~  288 (365)
                      .. ..+.+|+.+.|.|.+.+.|  .+. +.|+++  +....                ....+.....  ......|.|.+
T Consensus       226 ~~-~~v~~G~~v~L~C~~~g~p~~~~~-v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  303 (438)
T 1qgc_4          226 GG-GLVKPGGSLKLSCTASGFIFNRCA-MSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSS  303 (438)
T ss_dssp             CC-EEECTTCCEEEEEEEESSCGGGSC-EEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             Cc-eEEecCCcEEEEEEEcccccCCcE-EEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECC
Confidence            22 3388999999999999988  566 999986  32110                0012222221  23456799999


Q ss_pred             CCcccCeEEEEEEEcCCc-----cceecEEEEEEcC---cc-cc-----ccCccccEEEEEEEEE
Q psy3823         289 TSELEYGTLLCWARNEQG-----SQRTPCTFHVVKA---GE-CE-----HPVAVSHRYVAKLYAT  339 (365)
Q Consensus       289 v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~---~~-c~-----~~l~~~~~~~~~~~~~  339 (365)
                      ++.+|+|.|+|.|.|..+     .......+.|...   .| ..     ..+..|...++.|.+.
T Consensus       304 v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~  368 (438)
T 1qgc_4          304 LRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVK  368 (438)
T ss_dssp             CCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEE
T ss_pred             CChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEec
Confidence            999999999999999554     2234456666531   11 11     1244566666666554

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.96  E-value=8.1e-29  Score=214.28  Aligned_cols=243  Identities=20%  Similarity=0.269  Sum_probs=174.5

Q ss_pred             EEecCCcEEEEEEeCC-CCCc-ceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeE--EEEEEEeCCCCCcc
Q psy3823          23 GALRNEQVLVSCTVDA-NPQA-QYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGT--LLCWARNEQGNQRT   98 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~-~p~~-~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~--Y~C~a~~~~~~~~~   98 (365)
                      .+.+|+.++|.|.+.+ .|.+ ..++|++++.. +..   .....+.......+..++..|.|.  |+|.+.+..+....
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~-l~~---~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~   89 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR-LNP---TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET   89 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEE-CCC---EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEE-CCc---eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEE
Confidence            5789999999999666 6653 39999999988 654   122233322222222336778775  99999998887778


Q ss_pred             cEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEE
Q psy3823          99 PCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLV  178 (365)
Q Consensus        99 ~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~  178 (365)
                      .+.|.|..       ..+|.+..      ....+.+|+.+.|.|.+.  |.+. +.|  +|..+....      ....|.
T Consensus        90 ~~~l~V~~-------~p~p~~~~------~~~~v~~G~~v~l~C~~~--p~~~-i~W--~g~~~~~~~------~~~~l~  145 (265)
T 2oz4_A           90 LQTVTIYS-------FPAPNVIL------TKPEVSEGTEVTVKCEAH--PRAK-VTL--NGVPAQPLG------PRAQLL  145 (265)
T ss_dssp             EEEEEEEC-------CCCCEEEE------SCSEEETTCEEEEEEECC--TTSE-EEE--SSCSSSCCS------SEECCE
T ss_pred             EEEEEEeC-------CCCceeec------CCceecCCCcEEEEEEcc--CCCE-EEE--CCEEccCCC------CcEEEE
Confidence            88888821       11344432      334678899999999987  6555 999  777663211      235688


Q ss_pred             EeeecCCCCeEEEEEEEcCC-CCCC--cccEEEEEeeeeecccccCCCCceecCc-cceeeeecCceEEEEEEEeeeCCC
Q psy3823         179 LQSVTRHSGGLYACSAINSQ-GEGG--STPFDLNINKMVNLIFNSIDEPVCKQSQ-QRIYGALRNEQVLVSCTVDANPQA  254 (365)
Q Consensus       179 i~~~~~~d~G~Y~C~~~~~~-~~~~--s~~~~l~v~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~  254 (365)
                      |..+..+|+|.|+|.+.|.. |...  +..+.|.|.          ++|.+.... .....+.+|+.+.|.|.+.|.|.|
T Consensus       146 i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~----------~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p  215 (265)
T 2oz4_A          146 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL----------YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP  215 (265)
T ss_dssp             EECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEE----------EEEECCGGGSCSEEEEETTCEECCCCCCEEESCC
T ss_pred             EccccccCCceEEEEEEcCCCCCcccccccEEEEEE----------eCCccccccCCCccEEcCCCeEEEEeECccCCCC
Confidence            99999999999999998654 5432  255778887          666654332 223348899999999999999999


Q ss_pred             ceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         255 QYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       255 ~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      . +.|++++..         ....+.   +  ..++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       216 ~-i~W~~~~~~---------~~~~g~---~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          216 E-LKCLKDGTF---------PLPIGE---S--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             E-EEEEETTTE---------ECCTTS---C--EECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             e-EEEEECCcc---------cCCCCc---E--EEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence            8 999998861         112232   1  13778999999999999999999999998874

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.96  E-value=1.4e-27  Score=229.63  Aligned_cols=270  Identities=14%  Similarity=0.166  Sum_probs=186.4

Q ss_pred             eEEEEecCCcEEEEEEeCCCCC---cceEEEE-eCCCc---CCCC--------CCceeEec--CCeEEEEEEccCCCCCC
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQ---AQYFTWA-FNNSG---TAPR--------PLTSYSIQ--DGSTSVARYTPTSELEY   82 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~---~~~v~W~-~~~~~---~l~~--------~~~~~~~~--~~~~~~l~i~~~~~~d~   82 (365)
                      ..+.+.+|+.+.|.|.+. .|.   + .+.|+ +++..   .+..        ........  ......|.|.+++.+|.
T Consensus       225 ~~~~~~~G~~v~l~C~~~-~~~~~~~-~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~  302 (585)
T 2ocw_A          225 ELVYEDLRGSVTFHCALG-PEVANVA-KFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDA  302 (585)
T ss_pred             ceeEEcCCCcEEEEEEcC-CCCCCce-EEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhC
Confidence            445678999999999963 343   4 88997 77732   0110        11111111  12233799999999999


Q ss_pred             eEEEEEEEeCCCCCc----ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCee----E
Q psy3823          83 GTLLCWARNEQGNQR----TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKL----I  154 (365)
Q Consensus        83 G~Y~C~a~~~~~~~~----~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i----~  154 (365)
                      |.|+|.|.|......    ..+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.+.|.+. +    .
T Consensus       303 G~Y~C~a~n~g~~~~~~~~~~~~l~V---------~~~p~~~~~~----~~~~~~~G~~v~l~C~~~~~p~p~-i~~w~~  368 (585)
T 2ocw_A          303 GRYLCGAHSDGQLQEGSPIQAWQLFV---------NEESTIPRSP----TVVKGVAGSSVAVLCPYNRKESKS-IKYWCL  368 (585)
T ss_pred             EEEEEEEEcCCCccccCceeeEEEEE---------ecccccccCC----cceEEEeCCcEEEEEecCCCCCcc-EEEEEE
Confidence            999999999543332    6777888         5566544332    334678999999999999988886 5    7


Q ss_pred             EEe--CCe--EEeeCC-------CCceEE----eec--eEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecc
Q psy3823         155 WTH--NGI--TISNNA-------SAGRII----TNQ--TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLI  217 (365)
Q Consensus       155 W~~--~~~--~l~~~~-------~~~~~~----~~~--~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~  217 (365)
                      |++  ||.  .+....       ..+...    .++  +|.|.+++.+|+|.|+|.+ |..|... ..+.|.|.      
T Consensus       369 W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~-~~~~l~V~------  440 (585)
T 2ocw_A          369 WEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWR-TTVEIKII------  440 (585)
T ss_pred             EEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccc-eeEEEEEe------
Confidence            999  887  443211       111111    123  4999999999999999999 7777554 66788887      


Q ss_pred             cccCCC-CceecCccceeeeecCceEEEEEEEe----eeCCCceeEEEeCCCCCCCCCCc------eeEeeCCCEEEEEE
Q psy3823         218 FNSIDE-PVCKQSQQRIYGALRNEQVLVSCTVD----ANPQAQYFTWAFNNSDTAPRPLT------SYSIQDGSTSVARY  286 (365)
Q Consensus       218 ~~~~~~-p~~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~~~~~W~~~~~~~~~~~~~------~~~~~~~~~s~l~i  286 (365)
                          .. |.+.. +.. ..+..|+.+.|.|.+.    +.|.+. +.|+++|.........      .....++..+.|.|
T Consensus       441 ----~~~p~~~~-~~~-~~v~~G~~v~L~C~~~~~~~~~p~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  513 (585)
T 2ocw_A          441 ----EGEPNLKV-PGN-VTAVLGETLKVPCHFPCKFSSYEKYW-CKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTL  513 (585)
T ss_pred             ----cCcccccc-CCc-eeEecCCcEEEEEEecCCCCCCccEE-EEEeecCceeeeccCCCCCcceEEecCcccEEEEEE
Confidence                43 43332 222 3388999999999997    567777 9999998754332211      11122455678999


Q ss_pred             cCCCcccCeEEEEEEEcCCcccee-cEEEEEEcCc
Q psy3823         287 TPTSELEYGTLLCWARNEQGSQRT-PCTFHVVKAG  320 (365)
Q Consensus       287 ~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~  320 (365)
                      .+++.+|+|.|+|.|.|..|.... .+.|.|..++
T Consensus       514 ~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          514 NLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             CCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            999999999999999999997654 4788887664

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.96  E-value=5.1e-27  Score=225.63  Aligned_cols=301  Identities=12%  Similarity=0.162  Sum_probs=201.2

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCC-------------CCceeEecC---
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPR-------------PLTSYSIQD---   66 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~-------------~~~~~~~~~---   66 (365)
                      +.+.+..+|.+. ..+....+.+|+.++|.|.+.+. |.+ .+.|++++.. ...             ........+   
T Consensus       105 ~~l~V~~~p~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~  181 (585)
T 2ocw_A          105 VSLEVSQGPGLL-NDTKVYTVDLGRTVTINCPFKTENAQK-RKSLYKQIGL-YPVLVIDSSGYVNPNYTGRIRLDIQGTG  181 (585)
T ss_pred             EEEEEecCcccc-CCCccEEEEcCCCEEEEEEecCCCCCc-cEEEEECCCC-CceEEecCCcccCccccCcEEEEeccCC
Confidence            455566667543 34556778999999999997654 455 8999999764 210             111111111   


Q ss_pred             CeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe
Q psy3823          67 GSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA  146 (365)
Q Consensus        67 ~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  146 (365)
                      .....|.|.+++.+|+|.|+|.|.+..+.....+.|.|         ..+|.         ....+.+|+.+.|.|.+.+
T Consensus       182 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V---------~~~~p---------~~~~~~~G~~v~l~C~~~~  243 (585)
T 2ocw_A          182 QLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQV---------LKPEP---------ELVYEDLRGSVTFHCALGP  243 (585)
T ss_pred             CcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEE---------ccCCC---------ceeEEcCCCcEEEEEEcCC
Confidence            12347999999999999999999998888778889988         33221         1124678999999999743


Q ss_pred             cCCC-CeeEEE-eCCe---EEeeCC-------CCceEEe----ec--eEEEeeecCCCCeEEEEEEEcCCCCCC---ccc
Q psy3823         147 NPPY-KKLIWT-HNGI---TISNNA-------SAGRIIT----NQ--TLVLQSVTRHSGGLYACSAINSQGEGG---STP  205 (365)
Q Consensus       147 ~p~~-~~i~W~-~~~~---~l~~~~-------~~~~~~~----~~--~l~i~~~~~~d~G~Y~C~~~~~~~~~~---s~~  205 (365)
                      .+++ ..+.|+ ++|.   .+....       ..+....    ++  +|.|.+++.+|+|.|+|.+.|..+...   ...
T Consensus       244 ~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~  323 (585)
T 2ocw_A          244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA  323 (585)
T ss_pred             CCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceee
Confidence            3322 348887 7873   221110       1111111    23  799999999999999999999533321   256


Q ss_pred             EEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCcee----EEEe--CCC--CCCCC--------
Q psy3823         206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF----TWAF--NNS--DTAPR--------  269 (365)
Q Consensus       206 ~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~----~W~~--~~~--~~~~~--------  269 (365)
                      +.|.|.          .+|.+...+.. ..+..|+.+.|.|.+.+.|.+. +    .|++  +|.  .....        
T Consensus       324 ~~l~V~----------~~p~~~~~~~~-~~~~~G~~v~l~C~~~~~p~p~-i~~w~~W~~~~~g~~~~l~~~~~~~~~~~  391 (585)
T 2ocw_A          324 WQLFVN----------EESTIPRSPTV-VKGVAGSSVAVLCPYNRKESKS-IKYWCLWEGAQNGRCPLLVDSEGWVKAQY  391 (585)
T ss_pred             EEEEEe----------cccccccCCcc-eEEEeCCcEEEEEecCCCCCcc-EEEEEEEEccCCCCCceeeeecceeeccc
Confidence            778888          77776654433 3388999999999999999887 5    7998  765  22110        


Q ss_pred             CCceeEee--CCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc-----ccccCccccEEEEEEEE
Q psy3823         270 PLTSYSIQ--DGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE-----CEHPVAVSHRYVAKLYA  338 (365)
Q Consensus       270 ~~~~~~~~--~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~-----c~~~l~~~~~~~~~~~~  338 (365)
                      ..+..+..  ......|.|.+++.+|+|.|+|.| |..|..+..+.|.|...++     -.+.+..|...++.|.+
T Consensus       392 ~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~  466 (585)
T 2ocw_A          392 EGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHF  466 (585)
T ss_pred             CCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEe
Confidence            11222221  223346999999999999999999 9999988888998875433     11234445555555544

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=8.3e-28  Score=223.77  Aligned_cols=259  Identities=18%  Similarity=0.224  Sum_probs=182.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceE-----EEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYF-----TWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE   92 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v-----~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~   92 (365)
                      ++....+.+|+.++|.|.+.+ |.+ .+     .|+|++.. +..         .....|.|.+++. |+| |+|.|.+.
T Consensus         5 ~P~~~~v~~G~~v~L~C~~~g-p~p-~~~~~~~~w~k~~~~-~~~---------~~~~~l~i~~v~~-d~g-Y~C~a~~~   70 (450)
T 1z7z_I            5 SPSKVILPRGGSVLVTCSTSC-DQP-MLLGIETPLPKKELL-LPG---------NNRKVYELSNVQE-DSQ-PMCYSNCP   70 (450)
T ss_dssp             ESSEEEEETTEEEEEEEECCS-SCC-CEEEECSSSCEEECC-SST---------TTEEEEEEEEECS-CBC-CEEEEEET
T ss_pred             CCCceEEecCCcEEEEEEccC-CCc-ccccccceeeecceE-ecC---------CCceEEEEEeccc-CCe-eEEEEeCC
Confidence            345677899999999999877 888 88     89998875 332         2223788999987 999 99999866


Q ss_pred             CCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCC--eeEEEeCCeEEeeCCCCce
Q psy3823          93 QGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYK--KLIWTHNGITISNNASAGR  170 (365)
Q Consensus        93 ~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~--~i~W~~~~~~l~~~~~~~~  170 (365)
                      .+.....+.|.|         ..+|.+.....   .+..+.+|+.+.|.|.+.+.+++.  .+.|++++..+....... 
T Consensus        71 ~~~~~~~~~l~V---------~~~P~~~~~~~---~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~-  137 (450)
T 1z7z_I           71 DGQSTAKTFLTV---------YWTPERVELAP---LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG-  137 (450)
T ss_dssp             TEEEEEECEEEE---------EBCCSEEEECC---CCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT-
T ss_pred             CCcceeEEEEEE---------EeCCCcceecC---CCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc-
Confidence            655557788888         55665442221   224688999999999999988773  489999999886432111 


Q ss_pred             EEeeceEEEeeecCCCCeEEEEEEEcCCCCCC-------cccEEEEEeeeeecccccCCCCceecCccceeeeecCceEE
Q psy3823         171 IITNQTLVLQSVTRHSGGLYACSAINSQGEGG-------STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVL  243 (365)
Q Consensus       171 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-------s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~  243 (365)
                      ...+..|.|.++..+|+|.|+|.+.|..|...       +....+.+...      ...+|.+..+    ..+..|+.+.
T Consensus       138 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~------~~~~p~~~~~----~~v~~G~~v~  207 (450)
T 1z7z_I          138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL------PATPPQLVSP----RVLEVDTQGT  207 (450)
T ss_dssp             TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCC------CSSCCEEECC----SEEETTSEEE
T ss_pred             cccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeecc------CCCCCEecCc----eeEEeCCcEE
Confidence            12246899999999999999999999876432       12233444300      0022322211    3388999999


Q ss_pred             EEEEEeee-C--CCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCe--EEEEEEEcCCccceecEEEEEEc
Q psy3823         244 VSCTVDAN-P--QAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG--TLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       244 l~C~~~~~-p--~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G--~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      |.|.+.+. |  .+. +.|+++|.....   ......+.....+.+ +++.+|+|  .|+|.|.|..|.....+.|.|..
T Consensus       208 l~C~~~g~~P~~~~~-~~W~~~~~~~~~---~~~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~  282 (450)
T 1z7z_I          208 VVCSLDGLFPVSEAQ-VHLALGDQRLNP---TVTYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS  282 (450)
T ss_dssp             EEEEEESCTTGGGCE-EEEEETTEECCC---EEEEETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEeeCCCCCCceE-EEEeCCCEeCCc---eEEecCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEec
Confidence            99999998 6  565 999998875432   222222222222223 67899999  99999999999988888888875

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=4.2e-28  Score=225.80  Aligned_cols=243  Identities=20%  Similarity=0.256  Sum_probs=170.3

Q ss_pred             EEEecCCcEEEEEEeCCC-C--CcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCe--EEEEEEEeCCCCC
Q psy3823          22 YGALRNEQVLVSCTVDAN-P--QAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG--TLLCWARNEQGNQ   96 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~-p--~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G--~Y~C~a~~~~~~~   96 (365)
                      ..+.+|+.+.|.|.+.+. |  .+ .++|++++.. +..  ......+.....+.+ +++.+|.|  .|+|.+.|..+..
T Consensus       198 ~~v~~G~~v~l~C~~~g~~P~~~~-~~~W~~~~~~-~~~--~~~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~  272 (450)
T 1z7z_I          198 RVLEVDTQGTVVCSLDGLFPVSEA-QVHLALGDQR-LNP--TVTYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQ  272 (450)
T ss_dssp             SEEETTSEEEEEEEEESCTTGGGC-EEEEEETTEE-CCC--EEEEETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEE
T ss_pred             eeEEeCCcEEEEEEeeCCCCCCce-EEEEeCCCEe-CCc--eEEecCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccE
Confidence            568899999999997777 6  66 9999999988 654  222223322222233 77899999  9999999998877


Q ss_pred             cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeece
Q psy3823          97 RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT  176 (365)
Q Consensus        97 ~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~  176 (365)
                      .....|.|..       ..+|.+..      ....+.+|+.++|.|.+.  |.+. +.|  +|..+....      ....
T Consensus       273 ~~~~~l~V~~-------~~~p~i~~------~~~~v~~G~~v~l~C~~~--p~p~-i~W--~g~~~~~~~------~~~~  328 (450)
T 1z7z_I          273 ETLQTVTIYS-------FPAPNVIL------TKPEVSEGTEVTVKCEAH--PRAK-VTL--NGVPAQPLG------PRAQ  328 (450)
T ss_dssp             EEEEEEEEEC-------CCCCEEEE------SCSEEETTCEEEEEEEC---------------------C------CCCC
T ss_pred             EEEEEEEEec-------CCCCeEec------CCeeEeCCCcEEEEEecC--CCCE-eEE--CCEEcCCCC------ceEE
Confidence            7778888831       12455443      234788999999999987  6666 999  777763211      2348


Q ss_pred             EEEeeecCCCCeEEEEEEEcCCC-CC--CcccEEEEEeeeeecccccCCCCceecCc-cceeeeecCceEEEEEEEeeeC
Q psy3823         177 LVLQSVTRHSGGLYACSAINSQG-EG--GSTPFDLNINKMVNLIFNSIDEPVCKQSQ-QRIYGALRNEQVLVSCTVDANP  252 (365)
Q Consensus       177 l~i~~~~~~d~G~Y~C~~~~~~~-~~--~s~~~~l~v~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~~p  252 (365)
                      |.|..+..+|+|.|+|.|.|..+ ..  .+..+.|.|.          ++|.+.... .....+.+|+.+.|.|.+.|.|
T Consensus       329 L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~----------~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P  398 (450)
T 1z7z_I          329 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL----------YGPRLDERDCPGNWTWPENSQQTPMCQAWGNP  398 (450)
T ss_dssp             EEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEE----------EEEECCSTTSCSEEEEETTCEECCCCCCEEES
T ss_pred             EEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEe----------cCCceeeccCCCceeEcCCCeEEEEEecccCC
Confidence            99999999999999999997654 22  2255777887          677665443 2334488999999999999999


Q ss_pred             CCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         253 QAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       253 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      .|. +.|+++|....         ..+..  +   .++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       399 ~p~-i~W~~~g~~~~---------~~g~~--~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  449 (450)
T 1z7z_I          399 LPE-LKCLKDGTFPL---------PIGES--V---TVTRDLEGTYLCRARSTQGEVTREVTVNVLS  449 (450)
T ss_dssp             CCE-EEEEETTTEEC---------CTTSC--E---ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCc-EEEEECCcccC---------CCCCe--E---eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence            998 99999986221         12221  2   5778999999999999999999999998874

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.96  E-value=2.3e-28  Score=221.24  Aligned_cols=229  Identities=11%  Similarity=0.099  Sum_probs=171.4

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEE
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTF  102 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l  102 (365)
                      .+.+|+.++|.|.+.+.|.+ .++|++++.. +       .....   .|.|.+++.+|+|.|+|.|.+..+.....+.|
T Consensus       107 ~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~-~-------~~~~~---~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l  174 (363)
T 1wio_A          107 HLLQGQSLTLTLESPPGSSP-SVQCRSPRGK-N-------IQGGK---TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI  174 (363)
T ss_dssp             SEESBSCEEEEEECCTTCCC-CEEEECSSSC-E-------EEESS---EEEECSBCGGGCEECEEEEEETTEEEEECCEE
T ss_pred             EEecCCCEEEEEEcCCCCCC-eEEEEcCCCc-c-------cccce---EEEEeeCChhcCCEEEEEEecCCCeEEEEEEE
Confidence            56899999999998788999 9999999876 3       12333   89999999999999999999876655566777


Q ss_pred             EEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-----cCCCCeeEEEeCCeEEeeC------CCCceE
Q psy3823         103 HVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-----NPPYKKLIWTHNGITISNN------ASAGRI  171 (365)
Q Consensus       103 ~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-----~p~~~~i~W~~~~~~l~~~------~~~~~~  171 (365)
                      .|         ..+|...       ....+.+|+.+.|.|.+.+     +|.+. +.|+++|..+...      ......
T Consensus       175 ~v---------~~~p~~~-------~~~~~~~G~~v~l~C~~~~~~~~~~P~p~-i~W~~~g~~~~~~~~~~~~~~~~~~  237 (363)
T 1wio_A          175 VV---------LAFQKAS-------SIVYKKEGEQVEFSFPLAFTVEKLTGSGE-LWWQAERASSSKSWITFDLKNKEVS  237 (363)
T ss_dssp             CE---------ECCSCSE-------EEEEEETBCCEEEECCCCCCCCSSCEEEE-EEEEESSCCCCCCEEEEEECSSCEE
T ss_pred             EE---------ecCCCCC-------CceEEecCCEEEEEEEEecccccCCCcee-EEEecCCCCccceEEEEEecCCeee
Confidence            77         3333221       1235778999999998876     55666 9999999876541      011121


Q ss_pred             E------------e--eceEEEeeecCCCCeEEEEEEEcC--CCCCCcccEEEEEeeeeecccccCCCCceecCccceee
Q psy3823         172 I------------T--NQTLVLQSVTRHSGGLYACSAINS--QGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYG  235 (365)
Q Consensus       172 ~------------~--~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~  235 (365)
                      .            .  ..+|.|.++...|+|.|+|.|.|.  .|... ..+.|.|.                        
T Consensus       238 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~-~~~~l~V~------------------------  292 (363)
T 1wio_A          238 VKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH-QEVNLVVM------------------------  292 (363)
T ss_dssp             EEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEE-EEEEEEEE------------------------
T ss_pred             ccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEE-EEEeEEEE------------------------
Confidence            1            1  338999999999999999999999  77433 55666665                        


Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      ...|+.+.|.|.+.+.|+|. .+.|+++|.....            ...|.|.++..+|+|.|+|.|.|. |....+..+
T Consensus       293 ~v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~------------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~  359 (363)
T 1wio_A          293 RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV------------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNI  359 (363)
T ss_dssp             EECCCSSSEEEEEESSCCTTCCEEEECSSSSCSE------------EESSSEEEESSCCSEEEEEEECSS-SSCCEEEEE
T ss_pred             EecCCCeeEEEEEccccCCCccEEEEeCCCceee------------eeeeeeeeeccccceeEEEEEecC-CeEEEecce
Confidence            11288899999999987775 5999998864321            123677899999999999999965 556667777


Q ss_pred             EEEc
Q psy3823         315 HVVK  318 (365)
Q Consensus       315 ~v~~  318 (365)
                      +|.+
T Consensus       360 ~V~~  363 (363)
T 1wio_A          360 KVLP  363 (363)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            7753

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.95  E-value=1.2e-27  Score=221.89  Aligned_cols=266  Identities=12%  Similarity=0.192  Sum_probs=171.4

Q ss_pred             ecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCCCCCce-e---EecCCe---EEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          25 LRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAPRPLTS-Y---SIQDGS---TSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        25 ~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~~~~~~-~---~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .+|+.+.|.|.+.+ .|.+..++|++++.. +...... .   ...++.   .+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus       129 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  207 (438)
T 1qgc_4          129 LTSGGASVVCFLNNFYPKDINVKWKIDGSE-RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  207 (438)
T ss_dssp             HHTTEEEEEEEEEEEBSSCEEEEEEETTEE-ECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             ccCCceEEEEEEccccCCCcEEEEEECCEE-cCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC
Confidence            36889999999655 565448999999987 6544111 1   011222   4579999999999999999999987765


Q ss_pred             cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecC--CCCeeEEEeC--CeEEee--------
Q psy3823          97 RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GITISN--------  164 (365)
Q Consensus        97 ~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~l~~--------  164 (365)
                      .  +.+.+..       ..++.....+    ....+.+|+.++|.|.+.|.|  .+. +.|+++  +..+..        
T Consensus       208 ~--~~~~~~~-------~~~~~~~~~~----~~~~v~~G~~v~L~C~~~g~p~~~~~-v~W~k~~~g~~~~~~~~~~~~~  273 (438)
T 1qgc_4          208 P--IVKSFNR-------NECEVMLVES----GGGLVKPGGSLKLSCTASGFIFNRCA-MSWVRQTPEKRLEWVATISSGG  273 (438)
T ss_dssp             C--EEEEEET-------TC-CCEEEEE----CCEEECTTCCEEEEEEEESSCGGGSC-EEEEEEETTTEEEEEEEECTTS
T ss_pred             c--eeccccc-------ccceeEEecC----CceEEecCCcEEEEEEEcccccCCcE-EEEEECCCCCCcEEEEEEeecC
Confidence            3  3333310       1122222222    234688999999999999887  445 999986  544421        


Q ss_pred             -------CCCCceEEe------eceEEEeeecCCCCeEEEEEEEcCCCC----CCcccEEEEEeeeeecccccCCCCcee
Q psy3823         165 -------NASAGRIIT------NQTLVLQSVTRHSGGLYACSAINSQGE----GGSTPFDLNINKMVNLIFNSIDEPVCK  227 (365)
Q Consensus       165 -------~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~~~----~~s~~~~l~v~~~~~~~~~~~~~p~~~  227 (365)
                             ....+....      ...|.|.+++.+|+|.|+|.+.|..+.    .......+.|..      ....+|.+.
T Consensus       274 ~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~------~~~~~P~v~  347 (438)
T 1qgc_4          274 TYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSA------AKTTPPSVY  347 (438)
T ss_dssp             CCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECS------SCCBCCEEE
T ss_pred             CceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEec------CCCCCCeEE
Confidence                   001122221      348999999999999999999985431    122345677661      000234443


Q ss_pred             cCccceeeeecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEc
Q psy3823         228 QSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       228 ~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      ...... .+..|+.++|.|.+.+. |.+..+.|+++|...... ........+.   .+.|.|.++..+| |.|+|.|.|
T Consensus       348 ~~~~~~-~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n  424 (438)
T 1qgc_4          348 PLAPGS-AAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAH  424 (438)
T ss_dssp             EECCCG-GGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEE-ECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEE
T ss_pred             EcCccc-ccccCCcEEEEEEeccccCCCcEEEEecCCCCCcee-ecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEe
Confidence            222121 26689999999999987 777239999988643211 1111112232   3469999998889 999999999


Q ss_pred             CCccceecEEE
Q psy3823         304 EQGSQRTPCTF  314 (365)
Q Consensus       304 ~~g~~~~~~~l  314 (365)
                      ..|.......|
T Consensus       425 ~~g~~~~~~~i  435 (438)
T 1qgc_4          425 PASSTKVDKKI  435 (438)
T ss_dssp             GGGTEEEEEEC
T ss_pred             CCCCcceeeec
Confidence            99986554433

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.95  E-value=3.4e-26  Score=201.66  Aligned_cols=262  Identities=15%  Similarity=0.167  Sum_probs=179.3

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC-ceeE-ecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL-TSYS-IQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      +|.+.. .+....+.+|+.++|.|.+.+.|.+ .++|++++.. +.... .... ...+....|.|.+++.+|+|.|+|.
T Consensus         4 ~P~~~~-~p~~~~v~~G~~v~l~C~~~g~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            4 APHFKE-ELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKE-IIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCEEEE-CCCCEEECTTCCEEEEEEEECSSCC-EEEEEETTEE-CCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCeeee-cccceEEeCCCcEEEEEEEeCCCCC-eEEEEECCEE-cccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence            455543 3456778999999999998888998 9999999988 55432 2222 2234456899999999999999999


Q ss_pred             EEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcC-CccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC
Q psy3823          89 ARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLG-RNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS  167 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~  167 (365)
                      |.|..+.....+.|.|         ..+|.+..... .......+.+|+.+.|.|.+.+.|.+. +.|++++..+.....
T Consensus        81 a~n~~g~~~~~~~l~V---------~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~  150 (305)
T 2nzi_A           81 ATNQGGSVSGTASLEV---------EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPV-ITWQKGQDLIDNNGH  150 (305)
T ss_dssp             EEETTEEEEEEEEEEE---------CEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCE-EEEEESSSBCCSSSS
T ss_pred             EEcCCCCccceEEEEE---------ecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCE-EEEEECCEECCCCCc
Confidence            9999887777888888         44443221100 000223567899999999999998886 999999988765433


Q ss_pred             CceEE--eeceEEEee-ecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecC------ccceee---
Q psy3823         168 AGRII--TNQTLVLQS-VTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQS------QQRIYG---  235 (365)
Q Consensus       168 ~~~~~--~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~------~~~~~~---  235 (365)
                      .....  ....|.|.+ +...|+|.|+|.|.|..|... ..+.|.|.          ..|.....      ......   
T Consensus       151 ~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~v~----------~~P~~p~~~~~~~~~~~~v~l~w  219 (305)
T 2nzi_A          151 YQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ-KTVELDVA----------DVPDPPRGVKVSDVSRDSVNLTW  219 (305)
T ss_dssp             CEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEE-EEEEEEEE----------BCCCCCEEEEEESCCSSCEEEEE
T ss_pred             EEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCcee-eEEEEEEe----------cCCCCCCCceeeeccCCEEEEEE
Confidence            22222  246899999 999999999999999998755 56777777          33321110      000000   


Q ss_pred             ---eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         236 ---ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       236 ---~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                         ...|....+.|.+...+.+. ..|...+..              ....|.|.++...+.|.|+|.|.|..|....+
T Consensus       220 ~~p~~~g~~~i~~y~v~~~~~~~-~~w~~~~~~--------------~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          220 TEPASDGGSKITNYIVEKCATTA-ERWLRVGQA--------------RETRYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             ECCSCCSBSCEEEEEEEEEETTS-CCEEEEEEE--------------SSSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             cCCccCCCCceeEEEEEEecCCC-CccEECccc--------------cCceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence               11233344555555555554 556553221              12348899999999999999999999976544

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.94  E-value=2.2e-26  Score=206.69  Aligned_cols=277  Identities=14%  Similarity=0.105  Sum_probs=165.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCC--CCcceEEEEeCC--CcCCC-----------------CCCceeEe--cCCeEEEEEEc
Q psy3823          19 QRIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNN--SGTAP-----------------RPLTSYSI--QDGSTSVARYT   75 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~--~~~l~-----------------~~~~~~~~--~~~~~~~l~i~   75 (365)
                      +....+.+|+.++|.|.+.+.  +.+ .+.|+|+.  .. +.                 ...+....  .......|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~k~~~g~~-~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYTFTDH-AIHWVKQNPGQR-LEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS   84 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTSS-CEEEEEECSSSC-EEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCCeEEeCCCcEEEEEEcCCcccccc-EEEEEEECCCCC-cEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence            344678999999999996655  356 89999973  22 10                 01111111  12345689999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeE
Q psy3823          76 PTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLI  154 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~  154 (365)
                      +++.+|+|.|+|.+.+..+.......|.|..     .+..+|.+......    ..+.+|+.++|.|.+.|. |.+..+.
T Consensus        85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~-----~~~~~P~i~~~~~~----~~~~~g~~v~L~C~~~g~~P~~~~v~  155 (344)
T 1za6_B           85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTVSS-----ASTKGPSVFPLAPS----SKSTSGGTAALGCLVKDYFPEPVTVS  155 (344)
T ss_dssp             SCCGGGCEEEEEEETTTTCEECCCEEEEECS-----SCCBCCEEEEECCS----CTTTSSSEEEEEEEEEEEBSSCCCEE
T ss_pred             CCCcccCEEEEEEEecCcceecCcEEEEEec-----CCCCCCeEEEcccc----ccccCCCcEEEEEEEeeEECCCeEEE
Confidence            9999999999999988543333567888831     01235655543322    245789999999999986 5433499


Q ss_pred             EEeCCeEEeeC------CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC-cccEEEEEee----------eeec-
Q psy3823         155 WTHNGITISNN------ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG-STPFDLNINK----------MVNL-  216 (365)
Q Consensus       155 W~~~~~~l~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-s~~~~l~v~~----------~~~~-  216 (365)
                      |+++|..+...      ...+.......|.|.++..+| |.|+|.|.|..+... ...+.+.+..          ...+ 
T Consensus       156 W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~  234 (344)
T 1za6_B          156 WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGG  234 (344)
T ss_dssp             ETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC----------------
T ss_pred             EecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCcccc
Confidence            99998753210      011111223478898888888 999999999876421 1111110000          0000 


Q ss_pred             -ccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeCCCCCCCCCC-ceeEeeCCCE---EEEEEcCCC
Q psy3823         217 -IFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSDTAPRPL-TSYSIQDGST---SVARYTPTS  290 (365)
Q Consensus       217 -~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~~~-~~~~~~~~~~---s~l~i~~v~  290 (365)
                       ......+|.+........ ...|+.++|.|.+.|.+++ ..+.|+++|........ ......++..   +.|.|....
T Consensus       235 ~~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~  313 (344)
T 1za6_B          235 GSGGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSR  313 (344)
T ss_dssp             ----CCBCCEEEEECCCGG-GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHH
T ss_pred             ccCCCCcCCEEEEeCCChH-hccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHH
Confidence             000114455443221111 2346669999999996443 24999999875432110 1111334432   446666666


Q ss_pred             cccCeEEEEEEEcCCccc
Q psy3823         291 ELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       291 ~~d~G~Y~C~a~n~~g~~  308 (365)
                      .+|+|.|+|.|.|.....
T Consensus       314 ~~~~g~YtC~a~~~~l~~  331 (344)
T 1za6_B          314 WQQGNVFSCSVMHEALHN  331 (344)
T ss_dssp             HHTTCEEEEEEECTTSTT
T ss_pred             ccCCCeEEEEEEcCCCCC
Confidence            677999999999976543

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.94  E-value=1.2e-27  Score=237.34  Aligned_cols=270  Identities=17%  Similarity=0.222  Sum_probs=61.3

Q ss_pred             EEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCcCCCCCCceeE--------ecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          21 IYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSGTAPRPLTSYS--------IQDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~~l~~~~~~~~--------~~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      ...+.+|+.++|.|.+.+  .|.+ .+.|++++.. +........        ........|.|.+++.+|+|.|+|.+.
T Consensus       233 ~~~v~~G~~v~L~C~~~~~~~~~~-~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  310 (772)
T 3v2a_R          233 GIELSVGEKLVLNCTARTELNVGI-DFNWEYPSSK-HQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS  310 (772)
T ss_dssp             CEEEETTCCEEEEEEEEECTTCCC-EEEEECC---------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEE
T ss_pred             ceEEecCCcEEEEEEEecCCCCce-eEEEecCCcc-CCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEE
Confidence            356889999999999655  4556 9999999887 544322211        112345689999999999999999999


Q ss_pred             eCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCce
Q psy3823          91 NEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR  170 (365)
Q Consensus        91 ~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~  170 (365)
                      +..+.....+.|.|         ..+|.+...+... ....+.+|+.+.|.|.+.++|.+. +.|+++|..+....   .
T Consensus       311 ~~~~~~~~~~~l~V---------~~~p~~~~~~~~~-~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~g~~l~~~~---~  376 (772)
T 3v2a_R          311 SGLMTKKNSTFVRV---------HEKPFVAFGSGME-SLVEATVGERVRIPAKYLGYPPPE-IKWYKNGIPLESNH---T  376 (772)
T ss_dssp             CSSCEEEEEEEEEE---------ECCCC----------------------------------------------------
T ss_pred             cCCcceeEEEEEEE---------eCCCeeEeccCCC-CcEEEcCCCcEEEEEEEeeeCCCe-EEEEECCEeCCCCc---e
Confidence            98877668888888         5566654433111 234678999999999999988887 99999998886421   1


Q ss_pred             EEeeceEEEeeecCCCCeEEEEEEEcCCCCCC-cccEEEEEeeeeecccccCCCCceecCc--cceeeeecCceEEEEEE
Q psy3823         171 IITNQTLVLQSVTRHSGGLYACSAINSQGEGG-STPFDLNINKMVNLIFNSIDEPVCKQSQ--QRIYGALRNEQVLVSCT  247 (365)
Q Consensus       171 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-s~~~~l~v~~~~~~~~~~~~~p~~~~~~--~~~~~~~~g~~~~l~C~  247 (365)
                      ......|.|.++...|+|.|+|.+.|..|... +..+.|.|.          .+|.+....  .....+..|+.+.|.|.
T Consensus       377 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~----------~~P~~~~~~~~~~~~~~~~g~~~~l~C~  446 (772)
T 3v2a_R          377 IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY----------VPPQIGEKSLISPVDSYQYGTTQTLTCT  446 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEe----------cCCcccccccCCCccccCCCCcEEEEeE
Confidence            22457899999999999999999999987543 456677777          777664321  11112778999999999


Q ss_pred             EeeeCCCceeEEEeCCCCCC------------------------------CC--CCceeE--eeCCCEEEEEEcCCCccc
Q psy3823         248 VDANPQAQYFTWAFNNSDTA------------------------------PR--PLTSYS--IQDGSTSVARYTPTSELE  293 (365)
Q Consensus       248 ~~~~p~~~~~~W~~~~~~~~------------------------------~~--~~~~~~--~~~~~~s~l~i~~v~~~d  293 (365)
                      +.+.|.|..+.|++++....                              ..  ......  ......+.|.|.++  +|
T Consensus       447 ~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d  524 (772)
T 3v2a_R          447 VYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NV  524 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--cc
Confidence            99998884499998643210                              00  000000  11122356777776  78


Q ss_pred             CeEEEEEEEcCCccceecEEEEEEc
Q psy3823         294 YGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       294 ~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      +|.|+|.|.|..|..+..+.|.|..
T Consensus       525 ~G~Y~C~a~N~~g~~~~~~~l~V~~  549 (772)
T 3v2a_R          525 SALYKCEAVNKVGRGERVISFHVTR  549 (772)
T ss_dssp             -------------------------
T ss_pred             CeEEEEEEEccccccceeEEEEEEC
Confidence            9999999999999988888887764

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.94  E-value=1.8e-25  Score=207.74  Aligned_cols=277  Identities=12%  Similarity=0.100  Sum_probs=171.8

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc-CCC-----------------CCCceeEe--cCCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG-TAP-----------------RPLTSYSI--QDGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~-~l~-----------------~~~~~~~~--~~~~~~~l~i~~   76 (365)
                      +....+.+|+.++|.|...+.+  .+ .+.|+|+... .+.                 ...+....  .......|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (444)
T 1igt_B            7 SGGGLVQPGGSLKLSCATSGFTFSDY-YMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR   85 (444)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeEEcCCCCEEEEEEcCCCccCCc-eEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence            3446789999999999966554  45 8999986421 010                 00111111  123355899999


Q ss_pred             CCCCCCeEEEEEEEeCCCCC---cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCe
Q psy3823          77 TSELEYGTLLCWARNEQGNQ---RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKK  152 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~~~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~  152 (365)
                      ++.+|+|.|+|.+.+..+..   ...+.|.|...     ...+|.+......    ..+.+|+.+.|.|.+.|. |.+..
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-----~~~~P~i~~~~~~----~~~~~g~~v~L~C~~~g~~P~p~~  156 (444)
T 1igt_B           86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSA-----KTTAPSVYPLAPV----CGDTTGSSVTLGCLVKGYFPEPVT  156 (444)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSC-----CCBCCEEEEECCC----SSCCCSSCEEEEEEEEEEBSSCCE
T ss_pred             CCHHHCEEEEEEEecCCcccccccCcEEEEecCC-----CCCCCceeEeccc----ccCCCCCcEEEEEEEcceeCCCcE
Confidence            99999999999999875441   24567777210     1234555433321    235789999999999985 66645


Q ss_pred             eEEEeCCeEEeeC--CC---CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeee--------ecccc
Q psy3823         153 LIWTHNGITISNN--AS---AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMV--------NLIFN  219 (365)
Q Consensus       153 i~W~~~~~~l~~~--~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~--------~~~~~  219 (365)
                      +.|++++..+...  ..   .+.......|.|.++..+| |.|+|.|.|..+... ....+.+..+.        .+...
T Consensus       157 v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~  234 (444)
T 1igt_B          157 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK-VDKKIEPRGPTIKPCPPCKCPAPN  234 (444)
T ss_dssp             EEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEE-EEEECCCCCCSCCCCCCCSCCCSC
T ss_pred             EEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcc-eEEEeccCCCCcccCCccccCCcc
Confidence            9999988753110  00   0122224578899998889 999999999987532 11222110000        00000


Q ss_pred             cCCCCceecCccceee-eecCceEEEEEEEeeeC---C-CceeEEEeCCCCCCCCCCc-eeEeeCC---CEEEEEEcCCC
Q psy3823         220 SIDEPVCKQSQQRIYG-ALRNEQVLVSCTVDANP---Q-AQYFTWAFNNSDTAPRPLT-SYSIQDG---STSVARYTPTS  290 (365)
Q Consensus       220 ~~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~p---~-~~~~~W~~~~~~~~~~~~~-~~~~~~~---~~s~l~i~~v~  290 (365)
                      ....|.+...+..... +..|+.+.|.|.+.|.+   + +. +.|+++|......... .....++   ..+.|.|.+++
T Consensus       235 ~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  313 (444)
T 1igt_B          235 LLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQ-ISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQD  313 (444)
T ss_dssp             CCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCE-EEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHH
T ss_pred             cCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeE-EEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHH
Confidence            0124544221211111 47899999999999984   3 45 9999998643322111 1112222   24579999999


Q ss_pred             cccCeEEEEEEEcCCccc
Q psy3823         291 ELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       291 ~~d~G~Y~C~a~n~~g~~  308 (365)
                      .+|+|.|+|.|.|..|..
T Consensus       314 ~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          314 WMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             HHTTCEEEEEEECTTCSS
T ss_pred             hccCCcEEEEEEcCCCCC
Confidence            999999999999999876

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.94  E-value=2.2e-24  Score=202.14  Aligned_cols=283  Identities=14%  Similarity=0.127  Sum_probs=170.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc-CCC-------C----------CCceeEec--CCeEEEEEEc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG-TAP-------R----------PLTSYSIQ--DGSTSVARYT   75 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~-~l~-------~----------~~~~~~~~--~~~~~~l~i~   75 (365)
                      ++....+.+|+.++|.|...+.+  .. .+.|||.... .+.       .          ..+.....  ......|.|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (475)
T 1iga_A            7 QSGAEVKKPGASVKVSCKASGYSFTSY-GLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (475)
T ss_pred             cCCcEEEeCCCCEEEEEEecCCCCCCc-eEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEEC
Confidence            45667889999999999976554  45 8999996421 010       0          01111111  1334589999


Q ss_pred             cCCCCCCeEEEEEEEeCCCC------CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-C
Q psy3823          76 PTSELEYGTLLCWARNEQGN------QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-P  148 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~~------~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p  148 (365)
                      +++.+|+|.|.|.+.+..+.      ....+.|.|...     +..+|.+.....     ....+|+.++|.|.+.|. |
T Consensus        86 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~-----~~~~P~i~~~~~-----~~~~~g~~v~L~C~~~g~~P  155 (475)
T 1iga_A           86 SLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSA-----SPTSPKVFPLSL-----CSTQPDGNVVIACLVQGFFP  155 (475)
T ss_pred             CCChhhCEEEEEEEeccCCCccceeeecCceEEEeccC-----CCcCCeEEecCc-----cccCCCCeEEEEEEEeeecC
Confidence            99999999999999987652      124567777310     012455443221     123689999999999986 4


Q ss_pred             C-CCeeEEEeCCeEEeeCC-------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeec----
Q psy3823         149 P-YKKLIWTHNGITISNNA-------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNL----  216 (365)
Q Consensus       149 ~-~~~i~W~~~~~~l~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~----  216 (365)
                      . +..|.|++++.......       ..+.......|.|......|+|.|+|.+.|..+......+.+.|......    
T Consensus       156 ~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~  235 (475)
T 1iga_A          156 QEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPS  235 (475)
T ss_pred             CCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCccccccc
Confidence            4 43599999875432110       01111123468888888899999999999988743333333333100000    


Q ss_pred             c----cccCCCCceecCccceeeeecCceEEEEEEEeeeCC---CceeEEEeCCCCCCCCCCc-eeEeeCC---CEEEEE
Q psy3823         217 I----FNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ---AQYFTWAFNNSDTAPRPLT-SYSIQDG---STSVAR  285 (365)
Q Consensus       217 ~----~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~~~~W~~~~~~~~~~~~~-~~~~~~~---~~s~l~  285 (365)
                      .    ......|.+.........+..|+.+.|.|.+.+.++   +. +.|  ++......... .....++   ..+.|.
T Consensus       236 ~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~-i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~  312 (475)
T 1iga_A          236 TPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVT-FTW--TPSSGKSAVQGPPERDLCGCYSVSSVLP  312 (475)
T ss_pred             ccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceE-EEE--CCCCcCCccccCceECCCCCEEEEEEEE
Confidence            0    000013333222212122578999999999998754   45 999  44322211111 1111122   245699


Q ss_pred             EcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         286 YTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       286 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      |.+++.+|+|.|+|.|.|..|.......|
T Consensus       313 I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v  341 (475)
T 1iga_A          313 GCAEPWNHGKTFTCTAAYPESKTPLTATL  341 (475)
T ss_pred             EchHHhccCCcEEEEEEcCCCCCceEEEe
Confidence            99999999999999999999976443344

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.94  E-value=6.3e-26  Score=224.89  Aligned_cols=281  Identities=14%  Similarity=0.138  Sum_probs=121.8

Q ss_pred             EEeecccCCeEee--CCceEEEEecC--CcEEEEEEeCCCCCcceEEEEeC--CCcCCCCCCceeEecCCeEEEEEEccC
Q psy3823           4 LIFNSTDEPVCKQ--SQQRIYGALRN--EQVLVSCTVDANPQAQYFTWAFN--NSGTAPRPLTSYSIQDGSTSVARYTPT   77 (365)
Q Consensus         4 ~~~~~~~~p~~~~--~~~~~~~v~~G--~~~~l~C~~~~~p~~~~v~W~~~--~~~~l~~~~~~~~~~~~~~~~l~i~~~   77 (365)
                      +.+.....|....  ..+..+.+.+|  +.++|.|.+.+ |.+ .++|+++  +...+............   .|.|.++
T Consensus       116 v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~-~v~w~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~  190 (772)
T 3v2a_R          116 VYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNL-NVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSY  190 (772)
T ss_dssp             ----------------CEEEEEEESSCCCEEEECCCCSC-SSC-CEEEEEETTTEEECCCSSSCEEETTT---EEEEEGG
T ss_pred             EEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCc-EEEEEecCCCccccCCCceeecCCCC---CeEecCC
Confidence            3334344444433  34566778899  99999999754 777 9999997  55423333332333333   6999999


Q ss_pred             CCCCCeEEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecC-CCCeeEE
Q psy3823          78 SELEYGTLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP-PYKKLIW  155 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~~i~W  155 (365)
                      +.+|.|.|+|.+.+...... ..+.+.+..       ..+|.+.+.+..   ...+.+|+.++|.|.+.+.+ +...+.|
T Consensus       191 ~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~-------~~~~~v~~~~~~---~~~v~~G~~v~L~C~~~~~~~~~~~~~W  260 (772)
T 3v2a_R          191 MISYAGMVFCEAKINDESYQSIMYIVVVVG-------YRIYDVVLSPSH---GIELSVGEKLVLNCTARTELNVGIDFNW  260 (772)
T ss_dssp             GTTTCSEEEEEEEETTEEEECCEEEEEEEC-------CCEEEEEEECCS---CEEEETTCCEEEEEEEEECTTCCCEEEE
T ss_pred             ChhhCeEEEEEEEECCceEEEEEEEEEEec-------CccceeeeCCCC---ceEEecCCcEEEEEEEecCCCCceeEEE
Confidence            99999999999997644333 224444411       123344454432   24688999999999999743 2335999


Q ss_pred             EeCCeEEeeCCCC----------ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCc
Q psy3823         156 THNGITISNNASA----------GRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPV  225 (365)
Q Consensus       156 ~~~~~~l~~~~~~----------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~  225 (365)
                      ++++..+......          ........|.|.+++.+|+|.|+|.+.|..+... ..+.|.|.          .+|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~-~~~~l~V~----------~~p~  329 (772)
T 3v2a_R          261 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK-NSTFVRVH----------EKPF  329 (772)
T ss_dssp             ECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEE-EEEEEEEE----------CCCC
T ss_pred             ecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCccee-EEEEEEEe----------CCCe
Confidence            9988875432111          1223356899999999999999999998877543 67788888          7776


Q ss_pred             eecCc--cceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         226 CKQSQ--QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       226 ~~~~~--~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      +....  .....+..|+.+.|.|.+.+.|.+. +.|+++|.....   ...+.   ....|.|.++..+|+|.|+|.|.|
T Consensus       330 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~g~~l~~---~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n  402 (772)
T 3v2a_R          330 VAFGSGMESLVEATVGERVRIPAKYLGYPPPE-IKWYKNGIPLES---NHTIK---AGHVLTIMEVSERDTGNYTVILTN  402 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEeccCCCCcEEEcCCCcEEEEEEEeeeCCCe-EEEEECCEeCCC---CceEc---cceeEEEecCChhcCceEEEEEEE
Confidence            54322  2233478999999999999999998 999998864432   11111   235699999999999999999999


Q ss_pred             CCccce--ecEEEEEE
Q psy3823         304 EQGSQR--TPCTFHVV  317 (365)
Q Consensus       304 ~~g~~~--~~~~l~v~  317 (365)
                      ..|...  ..+.|.|.
T Consensus       403 ~~g~~~~s~~~~l~v~  418 (772)
T 3v2a_R          403 PISKEKQSHVVSLVVY  418 (772)
T ss_dssp             ----------------
T ss_pred             CCcCeEEEEEEEEEEe
Confidence            998654  34444443

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.93  E-value=2.1e-26  Score=204.92  Aligned_cols=259  Identities=12%  Similarity=0.135  Sum_probs=161.4

Q ss_pred             CcEEEEEEeCCC-C-CcceEEEEeCCCcCCCCCCce--eEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823          28 EQVLVSCTVDAN-P-QAQYFTWAFNNSGTAPRPLTS--YSIQDG---STSVARYTPTSELEYGTLLCWARNEQGNQRTPC  100 (365)
Q Consensus        28 ~~~~l~C~~~~~-p-~~~~v~W~~~~~~~l~~~~~~--~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~  100 (365)
                      +.++|.|.+.+. | .+ .|+|++++.. +......  ....++   ..+.|.|.+...+|.|.|+|.|.|..+.....+
T Consensus        25 ~~v~L~C~~~g~~P~~~-~v~W~k~g~~-l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  102 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTI-QITWLEDGQV-MDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDST  102 (323)
T ss_dssp             SEEEEEEEEEEECCCCE-EEEEEETTEE-CCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEEeCeECCCe-EEEEEECCEE-cccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceee
Confidence            699999996554 5 45 9999999987 6543221  111233   234688888888899999999998765432222


Q ss_pred             EEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecC-CC--CeeEEEeCC-eEEeeCC------CCce
Q psy3823         101 TFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP-PY--KKLIWTHNG-ITISNNA------SAGR  170 (365)
Q Consensus       101 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~--~~i~W~~~~-~~l~~~~------~~~~  170 (365)
                      .+.+  .    .....|.+.+.+.   ....+.+|++++|.|.+.+.+ .+  ..|.|++++ ..+....      ..+.
T Consensus       103 ~~~~--~----~~~~~p~v~~~~p---~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~  173 (323)
T 2wqr_A          103 KKCA--D----SNPRGVSAYLSRP---SPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGT  173 (323)
T ss_dssp             CCCC--C----SSGGGCEEEECCC---CHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSC
T ss_pred             ecCC--C----CCCCCCEEEEcCC---CHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCC
Confidence            1100  0    0022444444332   223577899999999999864 44  259999964 4432211      1111


Q ss_pred             EEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee
Q psy3823         171 IITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA  250 (365)
Q Consensus       171 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~  250 (365)
                      ......|.|.++..+|+|.|+|.+.|..+..   ...+.+...    .....+|.+........ ...|+.++|.|.+.+
T Consensus       174 ~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~---~~~~~v~~~----~~~~~~P~v~~~~~~~~-~~~g~~~~l~C~~~g  245 (323)
T 2wqr_A          174 LTVTSTLPVGTRDWIEGETYQCRVTHPHLPR---ALMRSTTKT----SGPRAAPEVYAFATPEW-PGSRDKRTLACLIQN  245 (323)
T ss_dssp             EEEEEEEECCHHHHHTTCCEEEEEECTTSSS---CEEEEECCC----CSCCBCCEEEEEECCCC-TTCTTEEEEEEEEEE
T ss_pred             EEEEEEEEECHHHccCCCCEEEEEECCCCCC---CeeeEEEcc----CCCCCCCEEEEeCCChH-HhcCCcEEEEEEeee
Confidence            1234579999999999999999999886422   234444300    00013455443221111 223999999999998


Q ss_pred             eCC-CceeEEEeCCCCCCCCCCcee-----EeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         251 NPQ-AQYFTWAFNNSDTAPRPLTSY-----SIQDGS---TSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       251 ~p~-~~~~~W~~~~~~~~~~~~~~~-----~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .++ +..+.|+++|......  ...     ...++.   .+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       246 ~~p~~~~v~W~k~g~~l~~~--~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          246 FMPEDISVQWLHNEVQLPDA--RHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EBSSCCEEEEEETTEECCGG--GEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             eeCCCcEEEEEECCEECCCC--ceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            544 3249999998744321  111     112222   356999999999999999999999877

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=191.24  Aligned_cols=216  Identities=17%  Similarity=0.203  Sum_probs=163.8

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe----eceEEEeeecCCCCeEEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT----NQTLVLQSVTRHSGGLYA  191 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~  191 (365)
                      +|.+...+    .+..+.+|+++.|.|.+.+.|.+. +.|++++..+...........    ...|.|.+++.+|+|.|+
T Consensus         4 ~P~~~~~p----~~~~v~~G~~v~l~C~~~g~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~   78 (305)
T 2nzi_A            4 APHFKEEL----RNLNVRYQSNATLVCKVTGHPKPI-VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQ   78 (305)
T ss_dssp             CCEEEECC----CCEEECTTCCEEEEEEEECSSCCE-EEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEE
T ss_pred             CCeeeecc----cceEEeCCCcEEEEEEEeCCCCCe-EEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEE
Confidence            56665544    345788999999999999988876 999999998865332222211    238999999999999999


Q ss_pred             EEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCc----cceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCC
Q psy3823         192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQ----QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA  267 (365)
Q Consensus       192 C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~----~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~  267 (365)
                      |.+.|..|... ..+.|.|.          .+|.+..+.    .....+..|+.+.|.|.+.+.|.+. +.|++++....
T Consensus        79 C~a~n~~g~~~-~~~~l~V~----------~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~  146 (305)
T 2nzi_A           79 VRATNQGGSVS-GTASLEVE----------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPV-ITWQKGQDLID  146 (305)
T ss_dssp             EEEEETTEEEE-EEEEEEEC----------EEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCE-EEEEESSSBCC
T ss_pred             EEEEcCCCCcc-ceEEEEEe----------cCCccCCCccccccccEEecCCCEEEEEEEECCCCCCE-EEEEECCEECC
Confidence            99999887643 66778877          444433211    1223378899999999999999998 99999887443


Q ss_pred             CCCCceeEeeCCCEEEEEEcC-CCcccCeEEEEEEEcCCccceecEEEEEEcCcc-------------------------
Q psy3823         268 PRPLTSYSIQDGSTSVARYTP-TSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE-------------------------  321 (365)
Q Consensus       268 ~~~~~~~~~~~~~~s~l~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~-------------------------  321 (365)
                       ..........+....|.|.+ +..+|.|.|+|.|.|..|....++.|.|...+.                         
T Consensus       147 -~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~  225 (305)
T 2nzi_A          147 -NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASD  225 (305)
T ss_dssp             -SSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCC
T ss_pred             -CCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccC
Confidence             23334444455567799999 999999999999999999998888888763221                         


Q ss_pred             -------ccc------------------------cCccccEEEEEEEEEcCCCCCceee
Q psy3823         322 -------CEH------------------------PVAVSHRYVAKLYATNAKGAGPMVL  349 (365)
Q Consensus       322 -------c~~------------------------~l~~~~~~~~~~~~~n~~g~s~~~~  349 (365)
                             |.+                        +|.++..|.++|.|.|..|.|++..
T Consensus       226 g~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~  284 (305)
T 2nzi_A          226 GGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSE  284 (305)
T ss_dssp             SBSCEEEEEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCCCC
T ss_pred             CCCceeEEEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCCcC
Confidence                   111                        8999999999999999999887543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.93  E-value=2.5e-25  Score=206.76  Aligned_cols=270  Identities=16%  Similarity=0.199  Sum_probs=165.5

Q ss_pred             EecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCCCCceeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          24 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      +.+|+.++|.|.+.+. |.+..++|++++.. +...........+   ..+.|.|.++..+| |.|+|.|.|..+.....
T Consensus       135 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~  212 (444)
T 1igt_B          135 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS-SGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD  212 (444)
T ss_dssp             CCCSSCEEEEEEEEEEBSSCCEEEEGGGTBC-TTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEE
T ss_pred             CCCCCcEEEEEEEcceeCCCcEEEEecCCCC-CCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceE
Confidence            3689999999996554 65449999999875 4211000000111   22468999999989 99999999988765333


Q ss_pred             EEEEEEecc-------ccC--CCCCCCeEEEEcCCccCccc-eecCCcEEEEEEEEecC---CCCeeEEEeCCeEEeeCC
Q psy3823         100 CTFHVVKAG-------ECE--HPVDKPSVQIKLGRNLNASV-LNEGVDIYFDCHIQANP---PYKKLIWTHNGITISNNA  166 (365)
Q Consensus       100 ~~l~V~~~~-------~~~--~~~~~p~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~p---~~~~i~W~~~~~~l~~~~  166 (365)
                      ..+.+....       .+.  ....+|.+.+.+..   ... +.+|++++|.|.+.|.+   +...+.|++++..+....
T Consensus       213 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~---~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~  289 (444)
T 1igt_B          213 KKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPK---IKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ  289 (444)
T ss_dssp             EECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCC---HHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTT
T ss_pred             EEeccCCCCcccCCccccCCcccCCCceEEecCCc---hhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcc
Confidence            332210000       000  00225665444432   112 57899999999999874   434599999998875322


Q ss_pred             CCc-------eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecC
Q psy3823         167 SAG-------RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN  239 (365)
Q Consensus       167 ~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g  239 (365)
                      ...       .....+.|.|.++..+|+|.|+|.|.|..+... ....+...      .....+|.+.........+..|
T Consensus       290 ~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~-~~~~v~~~------~~~~~~P~v~~~~~~~~~~~~~  362 (444)
T 1igt_B          290 TQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAP-IERTISKP------KGSVRAPQVYVLPPPEEEMTKK  362 (444)
T ss_dssp             CBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSC-EEEEEECC------CCCCBCCEEEEECCCGGGTTSS
T ss_pred             cccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCc-eEEEEecc------CCCCCCCEEEEeCCChHHccCC
Confidence            111       112345899999999999999999999887652 12222110      0111566654322221113444


Q ss_pred             ceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCcee--EeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         240 EQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSY--SIQDGST---SVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       240 ~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~--~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                       .++|.|.+.|. |++..+.|+++|.... ......  ...++..   +.|.|.....+|.|.|+|.|.|..-.
T Consensus       363 -~~~L~C~~~g~~P~~~~v~W~k~g~~l~-~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l~  434 (444)
T 1igt_B          363 -QVTLTCMVTDFMPEDIYVEWTNNGKTEL-NYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLH  434 (444)
T ss_dssp             -EEEEEEEEEEEBSSCCEEEEEETTEECS-SEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTSG
T ss_pred             -eEEEEEEEEeeeCCCCEEEEEECCEEcc-ccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCcC
Confidence             59999999985 5552499999987442 111111  1234432   45667776677899999999997643

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.93  E-value=1.3e-23  Score=183.10  Aligned_cols=190  Identities=19%  Similarity=0.314  Sum_probs=149.7

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe--eceEEEeeecCCCCeEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYA  191 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~  191 (365)
                      ..+|.+...+    ....+.+|+.++|.|.+.+.|.+. +.|++++..+...........  ...|.|.+++..|+|.|+
T Consensus         3 ~~pP~~~~~p----~~~~~~~G~~v~l~C~~~g~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~   77 (284)
T 2rik_A            3 MAPPFFDLKP----VSVDLALGESGTFKCHVTGTAPIK-ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT   77 (284)
T ss_dssp             CCCCEEEECC----CCEEEETTCCEEEEEEEESSSCCE-EEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cCCCEEEccc----cceEecCCCcEEEEEEEEcCCCCE-EEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEE
Confidence            4577776665    335688999999999999888776 999999998865433222222  568999999999999999


Q ss_pred             EEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC
Q psy3823         192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL  271 (365)
Q Consensus       192 C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~  271 (365)
                      |.+.|..|... ..+.|.|.          .+|.+.........+..|+.+.|.|.+.+.|.+. +.|++++..... ..
T Consensus        78 C~~~n~~g~~~-~~~~l~V~----------~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~-v~W~~~~~~~~~-~~  144 (284)
T 2rik_A           78 CYASNVAGKDS-CSAQLGVQ----------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIK-VLWYKDETEIQE-SS  144 (284)
T ss_dssp             EEEEETTEEEE-EEEEEEEE----------CCCEEEECCCSEEEEETTCCEEEEEEEESSSCCE-EEEEETTEECCC-SS
T ss_pred             EEEEECCceEE-EEEEEEcc----------CCCcccccCCCceEecCCceEEEEEEEeeeCCCE-EEEEECCEECcC-CC
Confidence            99999887643 67888888          7887765544444488999999999999999998 999999874432 23


Q ss_pred             ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc
Q psy3823         272 TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE  321 (365)
Q Consensus       272 ~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  321 (365)
                      ............|.|.+++.+|+|.|+|.|.|..|.....+.|.|..++.
T Consensus       145 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  194 (284)
T 2rik_A          145 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV  194 (284)
T ss_dssp             SEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCB
T ss_pred             cEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCc
Confidence            33444445567899999999999999999999999998888998876544

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.93  E-value=8.2e-24  Score=192.87  Aligned_cols=205  Identities=20%  Similarity=0.368  Sum_probs=159.5

Q ss_pred             ccceecCCcEEEEEEEEecCCCCeeEEEeC--CeEEeeCC---CCceEE----eeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHN--GITISNNA---SAGRII----TNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~--~~~l~~~~---~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      +..+.+|+++.|.|.+.|.|.+. +.|+++  |..+....   ..+...    ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         9 ~~~~~~G~~v~l~C~~~g~p~p~-v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   87 (389)
T 2jll_A            9 NETTYENGQVTLVCDAEGEPIPE-ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG   87 (389)
T ss_dssp             CEEEETTSEEEEEEEEECSSCCE-EEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred             ceEEeCCCeEEEEEEeecccCCe-EEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCC
Confidence            34678899999999999988887 999999  88886421   112222    256899999999999999999999988


Q ss_pred             CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC-CceeEeeC
Q psy3823         200 EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP-LTSYSIQD  278 (365)
Q Consensus       200 ~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~-~~~~~~~~  278 (365)
                      ... ..+.|.|.          .+|.+..... ...+..|+.+.|.|.+.+.|.+. +.|+++|....... .......+
T Consensus        88 ~~~-~~~~l~V~----------~~P~~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~-i~W~~~g~~l~~~~~~~~~~~~~  154 (389)
T 2jll_A           88 GHQ-KSMYLDIE----------YAPKFISNQT-IYYSWEGNPINISCDVKSNPPAS-IHWRRDKLVLPAKNTTNLKTYST  154 (389)
T ss_dssp             EEE-EEEEEEEE----------EEEEECCSCC-EEEECTTCCEEEEECEEEESCCE-EEEEETTEESSCTTCTTEEEEEC
T ss_pred             Ccc-eEEEEEEE----------eCCEEecCcc-eEEeccCCEEEEEEEEEecCCCe-EEEEECCccCCcccCceEEEecc
Confidence            654 67889998          7777655432 23378999999999999999998 99999986543322 23444556


Q ss_pred             CCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCcc------------------cc--------------c--
Q psy3823         279 GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAGE------------------CE--------------H--  324 (365)
Q Consensus       279 ~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~------------------c~--------------~--  324 (365)
                      +..+.|.|.++..+|+|.|+|.|.|..|.....+.+.+...+.                  |.              +  
T Consensus       155 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~  234 (389)
T 2jll_A          155 GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDV  234 (389)
T ss_dssp             SSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEE
T ss_pred             CCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEE
Confidence            6677899999999999999999999999887766665532111                  11              0  


Q ss_pred             -----------------------cCccccEEEEEEEEEcCCCCCce
Q psy3823         325 -----------------------PVAVSHRYVAKLYATNAKGAGPM  347 (365)
Q Consensus       325 -----------------------~l~~~~~~~~~~~~~n~~g~s~~  347 (365)
                                             +|.++..|.++|.|.|..|.+.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~  280 (389)
T 2jll_A          235 KEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDY  280 (389)
T ss_dssp             EETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCC
T ss_pred             EECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCC
Confidence                                   89999999999999999997764

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.92  E-value=8.6e-25  Score=203.88  Aligned_cols=276  Identities=12%  Similarity=0.105  Sum_probs=162.4

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-CC-------C----------CCceeEe--cCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-AP-------R----------PLTSYSI--QDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l~-------~----------~~~~~~~--~~~~~~~l~i~~~   77 (365)
                      ....+.+|+.++|.|...+.|  .+ .+.|+|..... ..       .          ..+....  .......|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (457)
T 1hzh_H            8 GAEVKKPGASVKVSCQASGYRFSNF-VIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (457)
T ss_dssp             CCEEECTTCCEEECEEEESSCGGGS-CEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceEEcCCCCEEEEEEecCccccCc-EEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence            346789999999999976665  56 89999853210 10       0          1111111  1234568999999


Q ss_pred             CCCCCeEEEEEEEeCCC------------CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE
Q psy3823          78 SELEYGTLLCWARNEQG------------NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ  145 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~------------~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~  145 (365)
                      +.+|+|.|+|.+.+..+            .......|.|..     .+..+|.+.....    ...+.+|+.++|.|.+.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~-----~~~~~P~i~~~~~----~~~~~~g~~v~L~C~~~  157 (457)
T 1hzh_H           87 RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSS-----ASTKGPSVFPLAP----SSKSTSGGTAALGCLVK  157 (457)
T ss_dssp             CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECS-----CCCBCCEEEEECC----CSCCCTTCCEEEEEEEE
T ss_pred             CcccCEEEEEEEecCCccccccccccccceECCcEEEEecC-----CCCCCCeEEecCc----cccccCCCcEEEEEEEe
Confidence            99999999999998765            122456777721     0112565554332    22467899999999999


Q ss_pred             ec-CCCCeeEEEeCCeEEeeC------CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeee---
Q psy3823         146 AN-PPYKKLIWTHNGITISNN------ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVN---  215 (365)
Q Consensus       146 ~~-p~~~~i~W~~~~~~l~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~---  215 (365)
                      +. |.+..+.|++++..+...      ...+.......|.|.++..+| |.|+|.+.|..+... ....+.+.....   
T Consensus       158 g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~-~~~~v~~~~~~~~~~  235 (457)
T 1hzh_H          158 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK-VDKKAEPKSCDKTHT  235 (457)
T ss_dssp             SBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEE-EEEECCCCCSCSSCS
T ss_pred             EEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcc-eeEEecccCCCcccc
Confidence            86 543459999988543110      011111223479999999999 999999999765422 112222110000   


Q ss_pred             ----cccccCCCCce-ecCccceeeeecCceEEEEEEEeeeCCC----ceeEEEeCCCCCCCCCCcee-EeeCCCEEEEE
Q psy3823         216 ----LIFNSIDEPVC-KQSQQRIYGALRNEQVLVSCTVDANPQA----QYFTWAFNNSDTAPRPLTSY-SIQDGSTSVAR  285 (365)
Q Consensus       216 ----~~~~~~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~----~~~~W~~~~~~~~~~~~~~~-~~~~~~~s~l~  285 (365)
                          +......+|.+ ...+.....+..|+.+.|.|.+.+.|++    . +.|++++........... ...++......
T Consensus       236 ~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~-i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~  314 (457)
T 1hzh_H          236 CPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVK-FNWYVDGVEVHNAKTKPREEQYNSTYRVVS  314 (457)
T ss_dssp             CCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCE-EEEEETTEEECCCEEEEEEECTTSCEEEEE
T ss_pred             cCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceE-EEEEeCCccccccccccceecCCCcEEEEE
Confidence                00000023443 2222111115679999999999987654    5 999999864322111111 12233322111


Q ss_pred             EcCCCccc---CeEEEEEEEcCCccc
Q psy3823         286 YTPTSELE---YGTLLCWARNEQGSQ  308 (365)
Q Consensus       286 i~~v~~~d---~G~Y~C~a~n~~g~~  308 (365)
                      ...+...|   +|.|+|.|.|..+..
T Consensus       315 ~l~i~~~d~~d~G~Y~C~a~n~~~~~  340 (457)
T 1hzh_H          315 VLTVLHQDWLNGKEYKCKVSNKALPA  340 (457)
T ss_dssp             EECCCHHHHHHTCCEEEEEECTTSSS
T ss_pred             EEEECHHHccCCCcEEEEEeCCCCCC
Confidence            22234455   999999999876654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.92  E-value=2.5e-23  Score=173.49  Aligned_cols=191  Identities=21%  Similarity=0.321  Sum_probs=140.5

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe----eceEEEeeecC-CCCeE
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT----NQTLVLQSVTR-HSGGL  189 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~----~~~l~i~~~~~-~d~G~  189 (365)
                      .+|.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+...........    ...|.|.+++. .|+|.
T Consensus         5 ~pP~~~~~p----~~~~v~~G~~v~l~C~~~g~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~   79 (212)
T 2yd1_A            5 HPPEIIRKP----QNQGVRVGGVASFYCAARGDPPPS-IVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAP   79 (212)
T ss_dssp             CCCEEEECC----CCEEEETTSCEEEEEEEECSSCCE-EEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSE
T ss_pred             CCCEEEcCC----CceEEecCCEEEEEEEEccCCCCe-EEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCce
Confidence            467766655    335788999999999999988876 999999998863332222221    25899999999 99999


Q ss_pred             EEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC
Q psy3823         190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR  269 (365)
Q Consensus       190 Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~  269 (365)
                      |+|.+.|..|...+..+.|.|.....   .....|.+...+.. ..+..|+.+.|.|.+.+.|.+. +.|++++......
T Consensus        80 Y~C~~~n~~g~~~~~~~~l~V~~~~~---~~~~~p~~~~~~~~-~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~  154 (212)
T 2yd1_A           80 YECVAENGVGDAVSADATLTIYEGDK---TPAGFPVITQGPGT-RVIEVGHTVLMTCKAIGNPTPN-IYWIKNQTKVDMS  154 (212)
T ss_dssp             EEEEEECSSSCEEEEEEEEEEECTTC---SCTTCCEEEECCCC-EEEETTCCEEECCEEECSSCCE-EEEEETTEECCTT
T ss_pred             EEEEEEeCCCCeEEeeEEEEEecccC---CCCCCCeeEeCCCc-eEeecCCeEEEEEEeccCCCCe-EEEEECCeEcccC
Confidence            99999999887455678888871100   00011555444333 3378899999999999999998 9999998755433


Q ss_pred             CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceec-EEEEEEcC
Q psy3823         270 PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP-CTFHVVKA  319 (365)
Q Consensus       270 ~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~  319 (365)
                      ...... .++   .|.|.+++.+|+|.|+|.|.|..|..... +.|.|..+
T Consensus       155 ~~~~~~-~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~  201 (212)
T 2yd1_A          155 NPRYSL-KDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR  201 (212)
T ss_dssp             STTEEE-ETT---EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             CCeEEc-cCC---eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEec
Confidence            333322 233   59999999999999999999999998754 78888755

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.92  E-value=1.1e-23  Score=175.57  Aligned_cols=190  Identities=18%  Similarity=0.318  Sum_probs=143.9

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCC-CCcee-EecCCeEEEEEEccCCC-CCCeEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPR-PLTSY-SIQDGSTSVARYTPTSE-LEYGTLLC   87 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~-~~~~~-~~~~~~~~~l~i~~~~~-~d~G~Y~C   87 (365)
                      +|.+.. .+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +.. ..... .........|.|.+++. +|+|.|+|
T Consensus         6 pP~~~~-~p~~~~v~~G~~v~l~C~~~g~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   82 (212)
T 2yd1_A            6 PPEIIR-KPQNQGVRVGGVASFYCAARGDPPP-SIVWRKNGKK-VSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC   82 (212)
T ss_dssp             CCEEEE-CCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEE-CCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred             CCEEEc-CCCceEEecCCEEEEEEEEccCCCC-eEEEEECCEE-CCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence            454443 4555678999999999998889999 9999999988 652 22222 22233446899999999 99999999


Q ss_pred             EEEeCCCC-CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCC
Q psy3823          88 WARNEQGN-QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNA  166 (365)
Q Consensus        88 ~a~~~~~~-~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~  166 (365)
                      .+.+..+. ....+.|.|.....  .+...|.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+....
T Consensus        83 ~~~n~~g~~~~~~~~l~V~~~~~--~~~~~p~~~~~~----~~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~~  155 (212)
T 2yd1_A           83 VAENGVGDAVSADATLTIYEGDK--TPAGFPVITQGP----GTRVIEVGHTVLMTCKAIGNPTPN-IYWIKNQTKVDMSN  155 (212)
T ss_dssp             EEECSSSCEEEEEEEEEEECTTC--SCTTCCEEEECC----CCEEEETTCCEEECCEEECSSCCE-EEEEETTEECCTTS
T ss_pred             EEEeCCCCeEEeeEEEEEecccC--CCCCCCeeEeCC----CceEeecCCeEEEEEEeccCCCCe-EEEEECCeEcccCC
Confidence            99998887 55778888842211  011225555443    234678899999999999988887 99999999887533


Q ss_pred             CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         167 SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       167 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      . .....++.|.|.++...|+|.|+|.|.|..|...+..+.|.|.
T Consensus       156 ~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~  199 (212)
T 2yd1_A          156 P-RYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK  199 (212)
T ss_dssp             T-TEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             C-eEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEE
Confidence            2 3455567999999999999999999999999876566788888

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.92  E-value=1.9e-23  Score=171.79  Aligned_cols=178  Identities=16%  Similarity=0.255  Sum_probs=136.9

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEE-ecCCCCeeEEEeCCeEEeeCCCCceEEe-----------eceEEEeeec
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQ-ANPPYKKLIWTHNGITISNNASAGRIIT-----------NQTLVLQSVT  183 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~~~~l~~~~~~~~~~~-----------~~~l~i~~~~  183 (365)
                      +|.+...+    .+..+.+|+++.|.|.+. +.|.+. +.|+++|..+...........           ...|.|.+++
T Consensus         2 ~~~~~~~p----~~~~v~~G~~v~l~C~~~~~~p~~~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   76 (195)
T 2c5d_C            2 ESPFVGNP----GNITGARGLTGTLRCQLQVQGEPPE-VHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQ   76 (195)
T ss_dssp             CCSEEECC----CCEEECTTCCEEEEEEEEEESSCCC-CEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCC
T ss_pred             CCeeccCh----hheEEecCCcEEEecccccCCCCcE-EEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEecc
Confidence            34444444    335688999999999999 888777 999999998865321111111           4689999999


Q ss_pred             CCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeC
Q psy3823         184 RHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFN  262 (365)
Q Consensus       184 ~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~  262 (365)
                      ..|+|.|+|.+.+..+...+..+.|.|.          .+|.+...+.. ..+..|+.+.|.|.+.+.|.| . +.|+++
T Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~~~~l~V~----------~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~p~~-v~W~~~  144 (195)
T 2c5d_C           77 LSDTGQYQCLVFLGHQTFVSQPGYVGLE----------GLPYFLEEPED-RTVAANTPFNLSCQAQGPPEPVD-LLWLQD  144 (195)
T ss_dssp             STTCEEEEEEEEETTEEEECCCEEEEEC----------CSCEEEECCCC-EEECTTCCEEEEEEEECSSCCCE-EEEEES
T ss_pred             ccCCcEEEEEEEeCCCceecccEEEEEe----------cCCeEEcCCCc-EEEcCCCEEEEEeECCCCCCCCE-EEEEEC
Confidence            9999999999999877655566889998          88877654443 338889999999999999999 7 999999


Q ss_pred             CCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce-ecEEEEEEc
Q psy3823         263 NSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR-TPCTFHVVK  318 (365)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~  318 (365)
                      +.........      .....|.|.+++  |+|.|+|.|.|..|... ..+.|.|.|
T Consensus       145 ~~~~~~~~~~------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V~P  193 (195)
T 2c5d_C          145 AVPLATAPGH------GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITVLP  193 (195)
T ss_dssp             SCBSSSSTTS------SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             CEeccCCCCc------CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEEec
Confidence            8754332211      234569999986  89999999999999985 799998843

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.92  E-value=8.6e-26  Score=209.26  Aligned_cols=276  Identities=12%  Similarity=0.100  Sum_probs=168.9

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc-CCC-------C----------CCceeEec--CCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG-TAP-------R----------PLTSYSIQ--DGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~-~l~-------~----------~~~~~~~~--~~~~~~l~i~~~   77 (365)
                      ....+.+|+.++|.|.+.+.+  .+ .+.|+|++.. .+.       .          ..+.....  .+....|.|.++
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (434)
T 1igy_B            7 GAELARPGASVKMSCKASGYTFTTY-TIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL   85 (434)
T ss_dssp             CCCEECTBCCEEECCEECSSCGGGC-CCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred             CCeEecCCCCEEEEEEccCCcccCc-eEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence            445689999999999977654  55 8999997421 010       0          01111111  122347999999


Q ss_pred             CCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEE
Q psy3823          78 SELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWT  156 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~  156 (365)
                      +.+|+|.|+|.+.+..+.......|.|...     +..+|.+......    ..+.+|+.++|.|.+.|. |.+..+.|+
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~-----~~~~P~i~~~~~~----~~~~~G~~v~L~C~~~g~~P~p~~v~W~  156 (434)
T 1igy_B           86 TSDDSAVYYCVREGEVPYWGQGTTVTVSSA-----KTTPPSVYPLAPG----SAAQTNSMVTLGCLVKGYFPEPVTVTWN  156 (434)
T ss_dssp             CGGGCSEECCCCSSSSCCCCCCEECEECCS-----CCBCCCEEEECCC----CCCCCTTEEEEEEEEEEEBSSCCEEEET
T ss_pred             ChHHCEEEEEEEEccccccCCceEEEEccC-----CCCCCeEEEcCCc----cccCCCCcEEEEEEEeeecCCCeEEEEe
Confidence            999999999999885444445677887310     0134555443321    235789999999999986 665459999


Q ss_pred             eCCeEEeeCC-----CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccc--cCCCCceecC
Q psy3823         157 HNGITISNNA-----SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFN--SIDEPVCKQS  229 (365)
Q Consensus       157 ~~~~~l~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~--~~~~p~~~~~  229 (365)
                      +++..+....     ..+.......|.|.++..+| |.|+|.|.|..+... ....+.+....-.+..  ....|.+...
T Consensus       157 k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~v~~~  234 (434)
T 1igy_B          157 SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTK-VDKKIVPRDCGCKPCICTVPEVSSVFIF  234 (434)
T ss_dssp             TTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCC-EEEECCCCCCCCCCCCCCCSSSCCEEEE
T ss_pred             eCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCcc-ceeeccCCCCCCccccCCCCcCcEEEEe
Confidence            9887531100     00112224578898888888 999999999987643 2222221100000000  0000333221


Q ss_pred             cccee-eeecCceEEEEEEEeeeC----CCceeEEEeCCCCCCCCCCce-eEeeCC---CEEEEEEcCCCcccCeEEEEE
Q psy3823         230 QQRIY-GALRNEQVLVSCTVDANP----QAQYFTWAFNNSDTAPRPLTS-YSIQDG---STSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       230 ~~~~~-~~~~g~~~~l~C~~~~~p----~~~~~~W~~~~~~~~~~~~~~-~~~~~~---~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      +.... .+..|+.+.|.|.+.+.+    .+. +.|++++.......... ....++   ..+.|.|.++..+|+|.|+|.
T Consensus       235 ~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~-i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  313 (434)
T 1igy_B          235 PPKPKDTLLITVTPKVTCVVVDISKDDPEVQ-FSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCR  313 (434)
T ss_dssp             CCCHHHHHSTTSCCEEEEEECCCCSSCCCCC-BCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCC
T ss_pred             CCChHHhcccCCCcEEEEEEeccccCCCCeE-EEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEE
Confidence            11111 167899999999999874    245 99999886432211100 001111   234699999999999999999


Q ss_pred             EEcCCccc
Q psy3823         301 ARNEQGSQ  308 (365)
Q Consensus       301 a~n~~g~~  308 (365)
                      |.|..|..
T Consensus       314 a~n~~~~~  321 (434)
T 1igy_B          314 VNSAAFPA  321 (434)
T ss_dssp             BCCSSCSS
T ss_pred             EECCCCCC
Confidence            99999865

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.92  E-value=1.5e-23  Score=172.51  Aligned_cols=184  Identities=18%  Similarity=0.240  Sum_probs=140.2

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe--e--ceEEEeeecCCCCeEEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--N--QTLVLQSVTRHSGGLYA  191 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~  191 (365)
                      +|.+...+    ....+.+|+++.|.|.+.+.|.+. +.|++++..+...........  +  ..|.|.+++..|+|.|+
T Consensus         4 ~P~~~~~~----~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   78 (197)
T 2j8h_A            4 APHFKEEL----RNLNVRYQSNATLVCKVTGHPKPI-VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQ   78 (197)
T ss_dssp             CCEEEECC----CCEEEETTSCEEEEEEEECSSCCE-EEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEEcC----CccEEcCCCEEEEEEEEeecCCCE-EEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEE
Confidence            56655444    335788999999999999988777 999999998875332222221  2  28999999999999999


Q ss_pred             EEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCc----cceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCC
Q psy3823         192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQ----QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA  267 (365)
Q Consensus       192 C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~----~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~  267 (365)
                      |.+.|..+... ..+.|.|.          .+|.+..+.    .....+..|+.+.|.|.+.+.|.+. +.|++++....
T Consensus        79 C~~~n~~g~~~-~~~~l~V~----------~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~  146 (197)
T 2j8h_A           79 VRATNQGGSVS-GTASLEVE----------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPV-ITWQKGQDLID  146 (197)
T ss_dssp             EEEEETTEEEE-EEEEEEEE----------EEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCE-EEEEESSCEEC
T ss_pred             EEEEECCCcee-EEEEEEEc----------CCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCc-EEEEECCEEee
Confidence            99999877643 66777777          444332211    1233478899999999999999998 99999887443


Q ss_pred             CCCCceeEeeCCCEEEEEEcC-CCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         268 PRPLTSYSIQDGSTSVARYTP-TSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       268 ~~~~~~~~~~~~~~s~l~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                       ..........+....|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       147 -~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          147 -NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             -SSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -cCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence             33344444555667899999 99999999999999999999888888875

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.92  E-value=8.4e-24  Score=176.40  Aligned_cols=192  Identities=18%  Similarity=0.305  Sum_probs=142.7

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeE-ecCCeEEEEEEccC-CCCCCeEEEE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS-IQDGSTSVARYTPT-SELEYGTLLC   87 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~-~~~~~~~~l~i~~~-~~~d~G~Y~C   87 (365)
                      .+|.+.. .+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +........ ..++....|.|.++ +.+|+|.|+|
T Consensus         5 ~~P~~~~-~p~~~~v~~G~~v~L~C~~~g~p~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   81 (212)
T 2yd6_A            5 TPPRFTR-TPVDQTGVSGGVASFICQATGDPRP-KIVWNKKGKK-VSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC   81 (212)
T ss_dssp             EEEEEEE-CCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEE-CCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEE
T ss_pred             CCCeEEe-CcceeEEecCCeEEEEEEEeeCCCC-EEEEEECCcC-CCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEE
Confidence            3454443 3455678999999999998788999 9999999988 665443322 23345568999999 5999999999


Q ss_pred             EEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC
Q psy3823          88 WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS  167 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~  167 (365)
                      .+.+..+.....+.|.|.....  .+...|.+...+    ....+.+|+.+.|.|.+.|.|.+. +.|++++..+.....
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~--~~~~~p~~~~~~----~~~~~~~g~~v~l~C~~~g~p~p~-v~W~~~g~~l~~~~~  154 (212)
T 2yd6_A           82 VASNNVGEISVSTRLTVLREDQ--IPRGFPTIDMGP----QLKVVERTRTATMLCAASGNPDPE-ITWFKDFLPVDTSNN  154 (212)
T ss_dssp             EEEETTEEEEEEEEEEEECGGG--CCTTCCEEEECC----CCEEEETTSCEEEEEEEECSSCCE-EEEEETTEEC-----
T ss_pred             EEEcCCCcEEEEEEEEEeccCc--cCCCcceeecCC----cceeEecCCCEEEEEEecCCCCCe-EEEEECCccccCcCC
Confidence            9999888777788888843211  011235554433    234678899999999999998887 999999998875422


Q ss_pred             -CceE-Ee---eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         168 -AGRI-IT---NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       168 -~~~~-~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                       .... ..   ...|.|.++..+|+|.|+|.|.|..|...+..+.|.+.
T Consensus       155 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          155 NGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             -CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence             1111 11   47899999999999999999999999887788899988

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.92  E-value=3.6e-23  Score=193.86  Aligned_cols=269  Identities=14%  Similarity=0.173  Sum_probs=163.9

Q ss_pred             ecCCcEEEEEEeCCC-CC-cceEEEEeCCCcCCCCCCce-eE-ecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          25 LRNEQVLVSCTVDAN-PQ-AQYFTWAFNNSGTAPRPLTS-YS-IQDG---STSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        25 ~~G~~~~l~C~~~~~-p~-~~~v~W~~~~~~~l~~~~~~-~~-~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+|+.++|.|.+.+. |. +..++|++++.. ....... .. ..++   ..+.|.|.++..+|.|.|+|.|.|..+...
T Consensus       139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~-~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  217 (475)
T 1iga_A          139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQG-VTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  217 (475)
T ss_pred             CCCCeEEEEEEEeeecCCCceEEEEcCCCcc-cceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCce
Confidence            689999999997665 65 349999998754 3211100 11 1122   123688889988999999999999876321


Q ss_pred             -ccEEEEEEecc--------ccCCC-CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC--CCeeEEEeCCeEEeeC
Q psy3823          98 -TPCTFHVVKAG--------ECEHP-VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP--YKKLIWTHNGITISNN  165 (365)
Q Consensus        98 -~~~~l~V~~~~--------~~~~~-~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~~i~W~~~~~~l~~~  165 (365)
                       ..+.+.|....        .+..+ ..+|.+.+.+..   ...+.+|+.+.|.|.+.|.++  +..|.|  ++..+...
T Consensus       218 ~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~---~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~  292 (475)
T 1iga_A          218 DVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPA---LEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSA  292 (475)
T ss_pred             eeeEecccccCcccccccccccCCCCCCCcEEEEcCCC---hHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCc
Confidence             33333331000        00000 124544343321   123579999999999998654  235999  44443221


Q ss_pred             CC-------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeec
Q psy3823         166 AS-------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALR  238 (365)
Q Consensus       166 ~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~  238 (365)
                      ..       .+.....+.|.|.++..+|+|.|+|.|.|..+... ....+.+.       ....+|.+.........+..
T Consensus       293 ~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~-~~~~v~~~-------~~~~~P~v~~~~~~~~~v~~  364 (475)
T 1iga_A          293 VQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTP-LTATLSKS-------GNTFRPEVHLLPPPSEELAL  364 (475)
T ss_pred             cccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCc-eEEEeecC-------CCCCCCeEEEECCChHHhcc
Confidence            11       01112356799999999999999999999888653 22333221       00156666533322222678


Q ss_pred             CceEEEEEEEeeeCCC-ceeEEEeCCCCCCCCC---CceeEe---eCCC---EEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         239 NEQVLVSCTVDANPQA-QYFTWAFNNSDTAPRP---LTSYSI---QDGS---TSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~~---~~~~~~---~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      |+.+.|.|.+.+.+++ ..+.|+++|.......   ......   .++.   .+.|.|.....+|.|.|+|.|.|....
T Consensus       365 g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          365 NELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             CCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            9999999999986433 2499999986543221   001112   2332   356788888788899999999998754

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.92  E-value=2.4e-23  Score=170.47  Aligned_cols=170  Identities=13%  Similarity=0.244  Sum_probs=134.6

Q ss_pred             ceec-CCcEEEEEEEEecCC-CCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         131 VLNE-GVDIYFDCHIQANPP-YKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       131 ~~~~-g~~v~l~C~~~~~p~-~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      .+.+ |+.+.|.|.+.+.+. ...+.|++++..+.....   ...+..|.|.+++.+|+|.|+|.+.|. +.. +..+.|
T Consensus        13 ~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~-~~~~~l   87 (190)
T 2wv3_A           13 IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK---NASNMEYRINKPRAEDSGEYHCVYHFV-SAP-KANATI   87 (190)
T ss_dssp             ECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCB---CCSEEEEEESSCCGGGCEEEEEEEEET-TEE-EEEEEE
T ss_pred             EEccCCceEEEEEEeccCCCCceEEEEEECCEECcccce---EeccEEEEEecCCcccCEEEEEEEEeC-Ccc-cccEEE
Confidence            4556 999999999998775 234999999998864322   225678999999999999999999998 543 367888


Q ss_pred             EEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEe--CCCCCCC--CCCceeEeeCCCEEEE
Q psy3823         209 NINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF--NNSDTAP--RPLTSYSIQDGSTSVA  284 (365)
Q Consensus       209 ~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~--~~~~~~~--~~~~~~~~~~~~~s~l  284 (365)
                      .|.          .+|.+........ +..|+.+.|.|.+.+.|.+. +.|++  ++.....  ...+.....++..+.|
T Consensus        88 ~V~----------~~p~~~~~~~~~~-~~~g~~v~l~C~~~g~p~p~-i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L  155 (190)
T 2wv3_A           88 EVK----------AAPDITGHKRSEN-KNEGQDAMMYCKSVGYPHPE-WMWRKKENGVFEEISNSSGRFFIINKENYTEL  155 (190)
T ss_dssp             EEE----------CCCEEEEECSEEE-EETTSCEEEEEEEECSSCCE-EEEEEEETTEEEECCCTTSCEEEEECSSEEEE
T ss_pred             EEe----------cCCcccccCCcce-eeCCCcEEEEEEeCccCCCc-eEEEEcCCCceeeeecCCCeEEEecCCCeeEE
Confidence            898          8888765443333 88999999999999999997 99999  4432211  2334445556666789


Q ss_pred             EEcCCC-cccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         285 RYTPTS-ELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       285 ~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      .|.+++ .+|+|.|+|.|.|..|....++.|.|.
T Consensus       156 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          156 NIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            999999 799999999999999999998888875

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.92  E-value=2e-24  Score=201.38  Aligned_cols=272  Identities=16%  Similarity=0.159  Sum_probs=157.8

Q ss_pred             EecCCcEEEEEEeCCC-CC-cceEEEEeCCCcCCCCCCceeE-ecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          24 ALRNEQVLVSCTVDAN-PQ-AQYFTWAFNNSGTAPRPLTSYS-IQDG---STSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~-p~-~~~v~W~~~~~~~l~~~~~~~~-~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      +.+|+.++|.|.+.+. |. + .++|++++.. +........ ..++   ..+.|.|.++..+| |.|+|.|.|..+...
T Consensus       144 ~~~g~~v~L~C~~~g~~P~~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~  220 (457)
T 1hzh_H          144 STSGGTAALGCLVKDYFPEPV-TVSWNSGALT-SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  220 (457)
T ss_dssp             CCTTCCEEEEEEEESBBSCCC-EEEETTTTBC-TTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEE
T ss_pred             ccCCCcEEEEEEEeEEeCCCe-EEEEEeCCEe-ccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcc
Confidence            5789999999996555 65 6 9999999876 432111111 1222   22479999999999 999999999765543


Q ss_pred             ccEEEEEEecc------ccCCC--CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC---CeeEEEeCCeEEeeCC
Q psy3823          98 TPCTFHVVKAG------ECEHP--VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY---KKLIWTHNGITISNNA  166 (365)
Q Consensus        98 ~~~~l~V~~~~------~~~~~--~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~---~~i~W~~~~~~l~~~~  166 (365)
                      ....+.+....      .+..+  ..+|.+.+.+..  ....+.+|++++|.|.+.|.+++   ..+.|++++..+....
T Consensus       221 ~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~--~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~  298 (457)
T 1hzh_H          221 VDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPK--PKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK  298 (457)
T ss_dssp             EEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCC--HHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCE
T ss_pred             eeEEecccCCCcccccCCCCCccccCCceEEeECcC--chhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccc
Confidence            33333221000      00000  124555444322  11126789999999999987654   2599999998875321


Q ss_pred             CCc-eEEeeceEEEee------ecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecC
Q psy3823         167 SAG-RIITNQTLVLQS------VTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN  239 (365)
Q Consensus       167 ~~~-~~~~~~~l~i~~------~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g  239 (365)
                      ... ....++.+.+..      ...+|+|.|+|.|.|..+... ....+.+.      .....+|.+.........+..|
T Consensus       299 ~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~-~~~~v~~~------~~~~~~P~v~~~~~~~~~~~~~  371 (457)
T 1hzh_H          299 TKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP-IEKTISKA------KGQPREPQVYTLPPSRDELTKN  371 (457)
T ss_dssp             EEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSC-EEEEECCC------CCCCBCCEEEEECCCGGGGGSS
T ss_pred             cccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCc-ceEEEEcc------cCCCCCCeEEEECCCccccCCC
Confidence            100 111233444432      233449999999998755332 22222210      0011556654332221224455


Q ss_pred             ceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCC-ceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         240 EQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPL-TSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       240 ~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~-~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      + +.|.|.+.|.+++. .+.|+++|........ ......++..   +.|.|.....+|+|.|+|.|.|.....
T Consensus       372 ~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  444 (457)
T 1hzh_H          372 Q-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  444 (457)
T ss_dssp             E-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             c-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCCC
Confidence            5 99999999975542 4999999865422111 0111234432   346666665678999999999986543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.91  E-value=8.9e-24  Score=173.44  Aligned_cols=185  Identities=13%  Similarity=0.179  Sum_probs=137.4

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC--ceeEecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      +|.+.. .+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +....  ............|.|.+++.+|+|.|+|.
T Consensus         5 ~P~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (194)
T 2a38_A            5 APTFTQ-PLQSVVVLEGSTATFEAHISGFPVP-EVSWFRDGQV-ISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK   81 (194)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCC-EEEEEESSSB-CCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEc-cCCceEEECCCEEEEEEEEEecCCC-EEEEEECCEE-cccccCCceEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            444433 4455678999999999998888988 9999999988 65443  22222233446899999999999999999


Q ss_pred             EEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCC
Q psy3823          89 ARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASA  168 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~  168 (365)
                      +.+..+.....+.|.|...      ..+|.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+......
T Consensus        82 ~~n~~~~~~~~~~l~v~~~------~~~p~~~~~~----~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~~~~~~~~  150 (194)
T 2a38_A           82 ATNGSGQATSTAELLVKAE------TAPPNFVQRL----QSMTVRQGSQVRLQVRVTGIPTPV-VKFYRDGAEIQSSLDF  150 (194)
T ss_dssp             EEETTEEEEEEEEEEEECC------CEEEEEEECC----CCEEECTTEEEEEEEEEEEESCCE-EEEEETTEECCCSSSE
T ss_pred             EEcCCceEeEEEEEEEccC------CCCCEEEeCC----ccEEEcCCCEEEEEEEEEEecCCe-EEEEECCEECCCCCcE
Confidence            9998877767777877311      1355544433    334678999999999999988887 9999999988754332


Q ss_pred             ceEEe--eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         169 GRIIT--NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       169 ~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      .....  ..+|.|.++...|+|.|+|.+.|..|... ..+.|.|
T Consensus       151 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V  193 (194)
T 2a38_A          151 QISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRAT-STAELLV  193 (194)
T ss_dssp             EEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEE-EEEEEEE
T ss_pred             EEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceE-EEEEEEE
Confidence            22222  22799999999999999999999998654 4555555

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.91  E-value=1.3e-23  Score=172.36  Aligned_cols=186  Identities=20%  Similarity=0.266  Sum_probs=139.8

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC--CceEEe--eceEEEeeecCCCCeEEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS--AGRIIT--NQTLVLQSVTRHSGGLYA  191 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~--~~~~~~--~~~l~i~~~~~~d~G~Y~  191 (365)
                      +|.+...+    ....+.+|+++.|.|.+.+.|.+. +.|+++|..+.....  ......  ...|.|.+++..|+|.|+
T Consensus         5 ~P~~~~~~----~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   79 (194)
T 2a38_A            5 APTFTQPL----QSVVVLEGSTATFEAHISGFPVPE-VSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS   79 (194)
T ss_dssp             EEEEEECC----CCEEEETTSCEEEEEEEEEESCCE-EEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEccC----CceEEECCCEEEEEEEEEecCCCE-EEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEE
Confidence            45554433    335788999999999999988776 999999988865432  222222  458999999999999999


Q ss_pred             EEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC
Q psy3823         192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL  271 (365)
Q Consensus       192 C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~  271 (365)
                      |.+.|..+... ..+.|.|...       ..+|.+...... ..+..|+.+.|.|.+.+.|.+. +.|+++|.... ...
T Consensus        80 C~~~n~~~~~~-~~~~l~v~~~-------~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~~~-~~~  148 (194)
T 2a38_A           80 LKATNGSGQAT-STAELLVKAE-------TAPPNFVQRLQS-MTVRQGSQVRLQVRVTGIPTPV-VKFYRDGAEIQ-SSL  148 (194)
T ss_dssp             EEEEETTEEEE-EEEEEEEECC-------CEEEEEEECCCC-EEECTTEEEEEEEEEEEESCCE-EEEEETTEECC-CSS
T ss_pred             EEEEcCCceEe-EEEEEEEccC-------CCCCEEEeCCcc-EEEcCCCEEEEEEEEEEecCCe-EEEEECCEECC-CCC
Confidence            99999877544 4556666510       023333333322 3388999999999999999998 99999987543 334


Q ss_pred             ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         272 TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       272 ~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      ......++..+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus       149 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          149 DFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             SEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            4555566667789999999999999999999999999888888763

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.91  E-value=5.5e-23  Score=168.95  Aligned_cols=186  Identities=14%  Similarity=0.186  Sum_probs=140.6

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe--eceEEEeeecCCCCeEEEE
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C  192 (365)
                      .+|.+...+    ....+.+|+++.|.|.+.+.|.+. +.|++++..+...........  ..+|.|.+++.+|+|.|+|
T Consensus         6 ~~P~~~~~~----~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   80 (197)
T 3lcy_A            6 EAPGIRKEM----KDVTTKLGEAAQLSCQIVGRPLPD-IKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTC   80 (197)
T ss_dssp             EEEEEEECC----CCEEEETTSEEEEEEEEEEESCCE-EEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEE
T ss_pred             CCCcccccC----CceEEeCCCcEEEEEEEecCCCCE-EEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEE
Confidence            355555443    345788999999999999988776 999999998865433222222  2379999999999999999


Q ss_pred             EEEcCCCCCCcccEEEEEeeeeecccccCCCCceecC--ccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC
Q psy3823         193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQS--QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP  270 (365)
Q Consensus       193 ~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~  270 (365)
                      .+.|..+... ..+.|.|.          ..|.+...  ......+..|+.+.|.|.+.+.|.+. +.|++++.... ..
T Consensus        81 ~~~n~~~~~~-~~~~l~v~----------~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~-~~  147 (197)
T 3lcy_A           81 IATNEVGEVE-TSSKLLLQ----------ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPA-MTWFHGQKLLQ-NS  147 (197)
T ss_dssp             EEECSSCEEE-EEEEEEEE----------EEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCE-EEEEETTEECC-CC
T ss_pred             EEECCCCcee-EEEEEEEE----------cCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCe-eEEeECCEECC-CC
Confidence            9998887544 55667776          44444321  12333478899999999999999998 99999887443 33


Q ss_pred             CceeEeeCCCEEEEEEcCCCc-ccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         271 LTSYSIQDGSTSVARYTPTSE-LEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       271 ~~~~~~~~~~~s~l~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      ........+....|.|.++.. +|+|.|+|.|.|..|..+..+.|.|..
T Consensus       148 ~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          148 ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             SSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             CceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            444455556667899999985 899999999999999999888888764

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.91  E-value=5.8e-23  Score=171.31  Aligned_cols=194  Identities=19%  Similarity=0.266  Sum_probs=137.2

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE---eeceEEEeee-cCCCCeEE
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII---TNQTLVLQSV-TRHSGGLY  190 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~---~~~~l~i~~~-~~~d~G~Y  190 (365)
                      .+|.+...+    .+..+.+|+.+.|.|.+.|.|.+. +.|++++..+..........   ....|.|.++ +..|+|.|
T Consensus         5 ~~P~~~~~p----~~~~v~~G~~v~L~C~~~g~p~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y   79 (212)
T 2yd6_A            5 TPPRFTRTP----VDQTGVSGGVASFICQATGDPRPK-IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIY   79 (212)
T ss_dssp             EEEEEEECC----CCEEEETTSCEEEEEEEEEESCCE-EEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEE
T ss_pred             CCCeEEeCc----ceeEEecCCeEEEEEEEeeCCCCE-EEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEE
Confidence            366665544    335688999999999999988876 99999999886432211111   1456999999 59999999


Q ss_pred             EEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC
Q psy3823         191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP  270 (365)
Q Consensus       191 ~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~  270 (365)
                      +|.+.|..|... ..+.|.|.....   .....|.+...+.. ..+..|+.+.|.|.+.|.|.+. +.|+++|.......
T Consensus        80 ~C~a~n~~g~~~-~~~~l~V~~~~~---~~~~~p~~~~~~~~-~~~~~g~~v~l~C~~~g~p~p~-v~W~~~g~~l~~~~  153 (212)
T 2yd6_A           80 ECVASNNVGEIS-VSTRLTVLREDQ---IPRGFPTIDMGPQL-KVVERTRTATMLCAASGNPDPE-ITWFKDFLPVDTSN  153 (212)
T ss_dssp             EEEEEETTEEEE-EEEEEEEECGGG---CCTTCCEEEECCCC-EEEETTSCEEEEEEEECSSCCE-EEEEETTEEC----
T ss_pred             EEEEEcCCCcEE-EEEEEEEeccCc---cCCCcceeecCCcc-eeEecCCCEEEEEEecCCCCCe-EEEEECCccccCcC
Confidence            999999887643 567777762100   00012444443333 2378899999999999999998 99999987544321


Q ss_pred             --CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce-ecEEEEEEcC
Q psy3823         271 --LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR-TPCTFHVVKA  319 (365)
Q Consensus       271 --~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~  319 (365)
                        ........+..+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..+
T Consensus       154 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~  205 (212)
T 2yd6_A          154 NNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT  205 (212)
T ss_dssp             --CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             CCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEec
Confidence              222333345567899999999999999999999999864 5566766654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.91  E-value=3.6e-23  Score=168.14  Aligned_cols=173  Identities=13%  Similarity=0.236  Sum_probs=134.8

Q ss_pred             eCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEe--cCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          16 QSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI--QDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        16 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      ...+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +.........  .......|.|.+++.+|+|.|+|.+.+..
T Consensus         6 ~~~p~~~~v~~G~~v~l~C~~~~~p~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   83 (182)
T 1rhf_A            6 MGAPVKLTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAV-VQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGG   83 (182)
T ss_dssp             -CCCEEEEEETTCCEEEEEEEESCSSC-CEEEEETTEE-CCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCT
T ss_pred             EeCCcceEEeCCCcEEEEEEEeCCCCC-eEEEEECCee-cCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCC
Confidence            345667889999999999997788998 9999999988 6554332222  22234689999999999999999999886


Q ss_pred             CCC-cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE
Q psy3823          94 GNQ-RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII  172 (365)
Q Consensus        94 ~~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~  172 (365)
                      +.. ...+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.+.|.+..+.|++++..+....     .
T Consensus        84 ~~~~~~~~~l~V---------~~~p~~~~~~----~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~-----~  145 (182)
T 1rhf_A           84 ETEISQPVWLTV---------EGVPFFTVEP----KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----P  145 (182)
T ss_dssp             TCEECCCEEEEE---------ECSCEEEECC----CCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-----E
T ss_pred             CcEEEEEEEEEE---------ecCCeEEecC----cceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCC-----C
Confidence            643 37888998         6678766644    234688999999999999998884499999998885321     1


Q ss_pred             eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         173 TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       173 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      ....|.|.++  +|+|.|+|.|.|..|...+..+.|.|
T Consensus       146 ~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          146 SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            4568888887  58999999999999877656777766

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.91  E-value=1.5e-22  Score=165.67  Aligned_cols=177  Identities=20%  Similarity=0.265  Sum_probs=133.9

Q ss_pred             cCCeEeeCCceEEEEec-CCcEEEEEEeCCCCC--cceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEE
Q psy3823          10 DEPVCKQSQQRIYGALR-NEQVLVSCTVDANPQ--AQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL   86 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~-G~~~~l~C~~~~~p~--~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   86 (365)
                      .+|.+...  ....+.+ |+.++|.|.+.+.|.  + .++|++++.. +.......     ....|.|.+++.+|+|.|+
T Consensus         2 ~~P~i~~~--~~~~v~~~G~~v~l~C~~~~~~~~~~-~v~W~~~~~~-~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~   72 (190)
T 2wv3_A            2 NEPRIVTS--EEVIIRDSLLPVTLQCNLTSSSHTLM-YSYWTKNGVE-LTATRKNA-----SNMEYRINKPRAEDSGEYH   72 (190)
T ss_dssp             -CCEEEEC--CCEECCCSSSCEEEEEEEEECSSCEE-EEEEEETTEE-CTTCCBCC-----SEEEEEESSCCGGGCEEEE
T ss_pred             CCCccccc--ceEEEccCCceEEEEEEeccCCCCce-EEEEEECCEE-CcccceEe-----ccEEEEEecCCcccCEEEE
Confidence            45666552  2334456 999999999777776  6 9999999988 65543311     3458999999999999999


Q ss_pred             EEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe--CCeEEee
Q psy3823          87 CWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH--NGITISN  164 (365)
Q Consensus        87 C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~--~~~~l~~  164 (365)
                      |.+.+. +.....+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.|+|.+. +.|++  ++..+..
T Consensus        73 C~~~n~-~~~~~~~~l~V---------~~~p~~~~~~----~~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~g~~~~~  137 (190)
T 2wv3_A           73 CVYHFV-SAPKANATIEV---------KAAPDITGHK----RSENKNEGQDAMMYCKSVGYPHPE-WMWRKKENGVFEEI  137 (190)
T ss_dssp             EEEEET-TEEEEEEEEEE---------ECCCEEEEEC----SEEEEETTSCEEEEEEEECSSCCE-EEEEEEETTEEEEC
T ss_pred             EEEEeC-CcccccEEEEE---------ecCCcccccC----CcceeeCCCcEEEEEEeCccCCCc-eEEEEcCCCceeee
Confidence            999998 66668888888         6688876654    334688999999999999998886 99999  8887753


Q ss_pred             CCC-CceEEe----eceEEEeeec-CCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         165 NAS-AGRIIT----NQTLVLQSVT-RHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       165 ~~~-~~~~~~----~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      ... ......    ..+|.|.++. .+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       138 ~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~  189 (190)
T 2wv3_A          138 SNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSAS-VSTVLRVR  189 (190)
T ss_dssp             CCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEE-EEEEEEEE
T ss_pred             ecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcce-eEEEEEEE
Confidence            222 122221    2479999999 7999999999999998654 55666654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.91  E-value=2.5e-23  Score=170.44  Aligned_cols=174  Identities=20%  Similarity=0.293  Sum_probs=134.9

Q ss_pred             ccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE-eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEE
Q psy3823         129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFD  207 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~  207 (365)
                      ...+.+|+++.|.|.+.+.|.+. +.|++++..+.......... ....|.|.+++..|+|.|+|.+.+..+...+....
T Consensus        16 ~~~~~~G~~v~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~   94 (192)
T 2iep_A           16 TVDALVEEVATFMCAVESYPQPE-ISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGA   94 (192)
T ss_dssp             EEEEETTSCEEEECCEEEESCCE-EEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEE
T ss_pred             ceeeeCCCcEEEEeeCCCCCCCe-EEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEE
Confidence            34678999999999999988876 99999999886533322222 24569999999999999999999988876556677


Q ss_pred             EEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEc
Q psy3823         208 LNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYT  287 (365)
Q Consensus       208 l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~  287 (365)
                      |.|.          .+|.+...... ..+..|+.+.|.|.+.+.|.+. +.|++++..... ........++   .|.|.
T Consensus        95 l~v~----------~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~~~~-~~~~~~~~~~---~L~i~  158 (192)
T 2iep_A           95 LQVK----------MKPKITRPPIN-VKIIEGLKAVLPCTTMGNPKPS-VSWIKGDSALRE-NSRIAVLESG---SLRIH  158 (192)
T ss_dssp             EEEE----------EEEEEEECCCC-EEEETTSCEEECCEEEEESCCE-EEEEETTEECCC-CSSEEECTTS---CEEES
T ss_pred             EEEE----------eCCccccCCcc-eEEeCCCcEEEEEEEeccCCce-EEEEeCCEEccC-CCcEEEecCC---cEEEe
Confidence            8887          66766654433 3388999999999999999998 999998864432 2223333333   49999


Q ss_pred             CCCcccCeEEEEEEEcCCccc-eecEEEEEEcC
Q psy3823         288 PTSELEYGTLLCWARNEQGSQ-RTPCTFHVVKA  319 (365)
Q Consensus       288 ~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~  319 (365)
                      ++..+|+|.|+|.|.|..|.. +..+.|.|..+
T Consensus       159 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~p  191 (192)
T 2iep_A          159 NVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF  191 (192)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             cCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeC
Confidence            999999999999999999987 55788888654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.91  E-value=6.6e-25  Score=203.31  Aligned_cols=267  Identities=13%  Similarity=0.130  Sum_probs=165.4

Q ss_pred             EecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCCCCceeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          24 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      +.+|+.++|.|.+.+. |.+..++|++++.. +...........+   ..+.|.|.+++.+| |.|+|.|.|..+.....
T Consensus       131 ~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~  208 (434)
T 1igy_B          131 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS-SGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVD  208 (434)
T ss_dssp             CCCTTEEEEEEEEEEEBSSCCEEEETTTTBC-SSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEE
T ss_pred             cCCCCcEEEEEEEeeecCCCeEEEEeeCCcC-CCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccce
Confidence            4689999999996554 65448999999875 3211000000111   22468999999889 99999999988765433


Q ss_pred             EEEEEEec----cccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC---CCeeEEEeCCeEEeeCCCC----
Q psy3823         100 CTFHVVKA----GECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP---YKKLIWTHNGITISNNASA----  168 (365)
Q Consensus       100 ~~l~V~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~---~~~i~W~~~~~~l~~~~~~----  168 (365)
                      ..+.+...    ..+..+.. |.+.+.+...  ...+.+|+.++|.|.+.|.++   +..|.|++++..+......    
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~-p~v~~~~p~~--~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~  285 (434)
T 1igy_B          209 KKIVPRDCGCKPCICTVPEV-SSVFIFPPKP--KDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREE  285 (434)
T ss_dssp             EECCCCCCCCCCCCCCCSSS-CCEEEECCCH--HHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCC
T ss_pred             eeccCCCCCCccccCCCCcC-cEEEEeCCCh--HHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCccee
Confidence            33332000    00000011 5554443221  112789999999999998742   3349999998776432111    


Q ss_pred             ---ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC-cccEEE--EEeeeeecccccCCCCceecCccceeeeecCceE
Q psy3823         169 ---GRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG-STPFDL--NINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQV  242 (365)
Q Consensus       169 ---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-s~~~~l--~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~  242 (365)
                         +.......|.|.++..+|+|.|+|.|.|..+... ...+.+  .+.          .+|.+........ ...|+.+
T Consensus       286 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~----------~~P~v~~~~~~~~-~~~~~~~  354 (434)
T 1igy_B          286 QFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKP----------RAPQVYTIPPPKE-QMAKDKV  354 (434)
T ss_dssp             CCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCC----------BCCCCEEECCCSS-SSSSSEE
T ss_pred             CCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCC----------cCCEEEEECCCHH-HhcCCcE
Confidence               0111245799999999999999999999887542 122222  222          5666543222211 3357789


Q ss_pred             EEEEEEeeeCCC-ceeEEEeCCCCCCCCCCcee--EeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         243 LVSCTVDANPQA-QYFTWAFNNSDTAPRPLTSY--SIQDGS---TSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       243 ~l~C~~~~~p~~-~~~~W~~~~~~~~~~~~~~~--~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .|.|.+.|.+++ ..+.|+++|..... .....  ...++.   .+.|.|.....+|+|.|+|.|.|....
T Consensus       355 ~L~C~~~g~~P~~~~v~W~k~g~~l~~-~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          355 SLTCMITDFFPEDITVEWQSDGQAPEN-YKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             EEEEEEEEEBCSCEEEEEEETTSCCSC-CEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             EEEEEEEeeECCCeEEEEEECCEecCC-ceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence            999999986443 24999999875421 11111  123343   245777777778899999999998654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.91  E-value=2.6e-23  Score=170.40  Aligned_cols=184  Identities=21%  Similarity=0.317  Sum_probs=141.0

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC-CceeEecCCeEEEEEEccCCCCCCeEEE
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP-LTSYSIQDGSTSVARYTPTSELEYGTLL   86 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   86 (365)
                      ++.+|.+ ...+..+.+.+|+.++|.|.+.+.|.+ .+.|++++.. +... .......++  ..|.|.+++.+|+|.|+
T Consensus         4 ~~~~P~i-~~~~~~~~~~~G~~v~l~C~~~~~p~~-~i~W~~~~~~-~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~   78 (192)
T 2iep_A            4 LPKAPVI-TTPLETVDALVEEVATFMCAVESYPQP-EISWTRNKIL-IKLFDTRYSIRENG--QLLTILSVEDSDDGIYC   78 (192)
T ss_dssp             CCEEEEE-SSCCCEEEEETTSCEEEECCEEEESCC-EEEEEETTEE-CCTTCTTEEEEGGG--TEEEESSCCGGGCEEEE
T ss_pred             cCCCcee-ecCccceeeeCCCcEEEEeeCCCCCCC-eEEEEECCEE-ccccCccEEEcCCc--cEEEEcCCCcccCeEEE
Confidence            3445544 344566778999999999998788998 9999999987 5432 222222222  27999999999999999


Q ss_pred             EEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeC
Q psy3823          87 CWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNN  165 (365)
Q Consensus        87 C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~  165 (365)
                      |.+.+..+... ..+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+...
T Consensus        79 C~~~~~~~~~~~~~~~l~v---------~~~p~~~~~~----~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~~~~~  144 (192)
T 2iep_A           79 CTANNGVGGAVESCGALQV---------KMKPKITRPP----INVKIIEGLKAVLPCTTMGNPKPS-VSWIKGDSALREN  144 (192)
T ss_dssp             EEEECSSSCCEEEEEEEEE---------EEEEEEEECC----CCEEEETTSCEEECCEEEEESCCE-EEEEETTEECCCC
T ss_pred             EEEEcCCCceeEeEEEEEE---------EeCCccccCC----cceEEeCCCcEEEEEEEeccCCce-EEEEeCCEEccCC
Confidence            99999877643 5667777         4566655433    234678999999999999988886 9999999988643


Q ss_pred             CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         166 ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       166 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      . ......+++|.|.++...|+|.|+|.+.|..|...+..+.|.|.
T Consensus       145 ~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          145 S-RIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             S-SEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             C-cEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence            2 22233466899999999999999999999998776677888887

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.90  E-value=4.3e-23  Score=169.67  Aligned_cols=174  Identities=12%  Similarity=0.179  Sum_probs=134.6

Q ss_pred             CceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCc--eeEecCCe-------EEEEEEccCCCCCCeEEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLT--SYSIQDGS-------TSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~--~~~~~~~~-------~~~l~i~~~~~~d~G~Y~C   87 (365)
                      .+....+.+|+.++|.|.+. +.|.+ .+.|++++.. +.....  ........       ...|.|.+++.+|+|.|+|
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   85 (195)
T 2c5d_C            8 NPGNITGARGLTGTLRCQLQVQGEPP-EVHWLRDGQI-LELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQC   85 (195)
T ss_dssp             CCCCEEECTTCCEEEEEEEEEESSCC-CCEEEETTEE-CCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEE
T ss_pred             ChhheEEecCCcEEEecccccCCCCc-EEEEEECCEE-cccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEE
Confidence            45567789999999999977 88988 9999999988 665422  11111111       4689999999999999999


Q ss_pred             EEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCC
Q psy3823          88 WARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNA  166 (365)
Q Consensus        88 ~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~  166 (365)
                      .+.+..+... ..+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.|.|.+..+.|++++..+....
T Consensus        86 ~~~~~~~~~~~~~~~l~V---------~~~p~~~~~~----~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~  152 (195)
T 2c5d_C           86 LVFLGHQTFVSQPGYVGL---------EGLPYFLEEP----EDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP  152 (195)
T ss_dssp             EEEETTEEEECCCEEEEE---------CCSCEEEECC----CCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSST
T ss_pred             EEEeCCCceecccEEEEE---------ecCCeEEcCC----CcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCC
Confidence            9999776544 5588998         6778766544    234678899999999999998883499999998886543


Q ss_pred             CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         167 SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       167 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      ..   ..+..|.|.+++  |+|.|+|.|.|..|...+..+.|.|.
T Consensus       153 ~~---~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V~  192 (195)
T 2c5d_C          153 GH---GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITVL  192 (195)
T ss_dssp             TS---SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             Cc---CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEEe
Confidence            22   345789999887  78999999999998765567777763

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.90  E-value=7.6e-23  Score=169.83  Aligned_cols=185  Identities=15%  Similarity=0.164  Sum_probs=127.4

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCceeEecC--CeEEEEEEccCCCCCCeEEEEE
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSYSIQD--GSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      |.++.  .....+.+|+.+.|.|... +.|.+ .++|++|+.. +..........+  .....|.|.+++.+|+|.|+|.
T Consensus         4 p~~~~--~~~~~v~eg~~v~l~c~~~~~~P~p-~i~W~kng~~-l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~   79 (207)
T 3rbs_A            4 PFTKS--ELAVEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKE-IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ   79 (207)
T ss_dssp             --CCE--EEEEEECGGGCEEEEEECSCCCSCC-EEEEEETTEE-ECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEE
T ss_pred             Ceeec--CCceEEEeCCeEEEEEEEecCCCCC-EEEEEECCEE-CccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEE
Confidence            44443  3457789999999999964 57999 9999999998 755444333222  3555799999999999999999


Q ss_pred             EEeCCCCCcccEEEEEEecc--------ccC----CCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEE
Q psy3823          89 ARNEQGNQRTPCTFHVVKAG--------ECE----HPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIW  155 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V~~~~--------~~~----~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W  155 (365)
                      |.|  +.......+.+....        ...    ....+|.+...+     ...+.+|+.+.|.|.+.|. |.|. ++|
T Consensus        80 a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-----~~~v~~g~~v~l~C~v~g~~P~p~-i~W  151 (207)
T 3rbs_A           80 LQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-----SWEVTGECNVLLKCKVANIKKETH-IVW  151 (207)
T ss_dssp             EEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-----EEEEETTTEEEEEEEEESCCTTCE-EEE
T ss_pred             EEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-----CcEEcCCCcEEEEEEEeCCCCCCE-EEE
Confidence            998  333333333221000        000    000256544322     1367899999999999998 7776 999


Q ss_pred             EeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         156 THNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       156 ~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      ++||.++.............+|.|.++..+|+|.|+|.|.|..|... ..+.|.
T Consensus       152 ~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~  204 (207)
T 3rbs_A          152 YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDK-SRLKLV  204 (207)
T ss_dssp             EETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEE-EEEEEC
T ss_pred             EECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEE-EEEEEe
Confidence            99999997543322222345799999999999999999999998655 344443

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.90  E-value=2.8e-23  Score=170.77  Aligned_cols=189  Identities=18%  Similarity=0.220  Sum_probs=140.6

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      +.++|.+.. .+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +..........++....|.|.+++.+|+|.|+|
T Consensus         4 ~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   80 (197)
T 3lcy_A            4 SGEAPGIRK-EMKDVTTKLGEAAQLSCQIVGRPLP-DIKWYRFGKE-LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTC   80 (197)
T ss_dssp             CCEEEEEEE-CCCCEEEETTSEEEEEEEEEEESCC-EEEEEETTEE-ECCCSSEEEEESSSEEEEEEECCSGGGCEEEEE
T ss_pred             cCCCCcccc-cCCceEEeCCCcEEEEEEEecCCCC-EEEEEECCEE-CCCCccEEEEeCCCEEEEEEecCCccCCEEEEE
Confidence            345565544 3456678999999999998788888 9999999988 665555455555666789999999999999999


Q ss_pred             EEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC
Q psy3823          88 WARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS  167 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~  167 (365)
                      .+.+..+.....+.|.|         ..+|.+..... ......+.+|+.+.|.|.+.+.|.+. +.|++++..+.....
T Consensus        81 ~~~n~~~~~~~~~~l~v---------~~~p~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~~~~~~  149 (197)
T 3lcy_A           81 IATNEVGEVETSSKLLL---------QATPQFHPGYP-LKEKYYGAVGSTLRLHVMYIGRPVPA-MTWFHGQKLLQNSEN  149 (197)
T ss_dssp             EEECSSCEEEEEEEEEE---------EEEEEECTTSC-CCSEEEEETTSCEEEEEEEEEESCCE-EEEEETTEECCCCSS
T ss_pred             EEECCCCceeEEEEEEE---------EcCCCCCCCcc-CCcceeecCCCeEEEEEEEeeeeCCe-eEEeECCEECCCCCc
Confidence            99988887777777777         33333211100 00223567899999999999999887 999999998875433


Q ss_pred             CceEEe--eceEEEeeecC-CCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         168 AGRIIT--NQTLVLQSVTR-HSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       168 ~~~~~~--~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      ......  ...|.|.++.. +|+|.|+|.|.|..|... ..+.|.|.
T Consensus       150 ~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~  195 (197)
T 3lcy_A          150 ITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVD-AILDVEIQ  195 (197)
T ss_dssp             EEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEE-EEEEEEEE
T ss_pred             eEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceE-EEEEEEEe
Confidence            222222  26799999985 899999999999998664 56666665

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.90  E-value=6.1e-23  Score=166.77  Aligned_cols=165  Identities=19%  Similarity=0.306  Sum_probs=130.2

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe----eceEEEeeecCCCCeEEEEEEEcCCCCCCccc
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT----NQTLVLQSVTRHSGGLYACSAINSQGEGGSTP  205 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~  205 (365)
                      ..+.+|+++.|.|.+.+.|.+. +.|++++..+...........    ...|.|.+++..|+|.|+|.+.+..+...+..
T Consensus        12 ~~v~~G~~v~l~C~~~~~p~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   90 (182)
T 1rhf_A           12 LTVSQGQPVKLNCSVEGMEEPD-IQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP   90 (182)
T ss_dssp             EEEETTCCEEEEEEEESCSSCC-EEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred             eEEeCCCcEEEEEEEeCCCCCe-EEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEE
Confidence            4678999999999999988777 999999998865322222222    36899999999999999999999877655578


Q ss_pred             EEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeCCCCCCCCCCceeEeeCCCEEEE
Q psy3823         206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSDTAPRPLTSYSIQDGSTSVA  284 (365)
Q Consensus       206 ~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l  284 (365)
                      +.|.|.          .+|.+...+... .+..|+.+.|.|.+.+.|.| . +.|++++.......        .....|
T Consensus        91 ~~l~V~----------~~p~~~~~~~~~-~~~~g~~~~l~C~~~g~p~p~~-v~W~~~~~~~~~~~--------~~~~~L  150 (182)
T 1rhf_A           91 VWLTVE----------GVPFFTVEPKDL-AVPPNAPFQLSCEAVGPPEPVT-IVWWRGTTKIGGPA--------PSPSVL  150 (182)
T ss_dssp             EEEEEE----------CSCEEEECCCCE-EECTTCCEEEEEEEECSSSCCE-EEEEETTEECSCSE--------ESSEEE
T ss_pred             EEEEEe----------cCCeEEecCcce-EecCCCEEEEEeEecCCCCCCE-EEEEcCCeECCCCC--------CCceEE
Confidence            899999          888876655443 38899999999999999998 7 99999876432210        134569


Q ss_pred             EEcCCCcccCeEEEEEEEcCCccce-ecEEEEEE
Q psy3823         285 RYTPTSELEYGTLLCWARNEQGSQR-TPCTFHVV  317 (365)
Q Consensus       285 ~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~  317 (365)
                      .|.++  +|+|.|+|.|.|..|... .++.|.|+
T Consensus       151 ~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          151 NVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             EECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence            99988  589999999999999885 47777763

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.90  E-value=1e-22  Score=166.35  Aligned_cols=175  Identities=15%  Similarity=0.268  Sum_probs=128.5

Q ss_pred             ccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCce-EEeeceEEEeeecCCCCeEEEEEEEcCCCCC-CcccE
Q psy3823         129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR-IITNQTLVLQSVTRHSGGLYACSAINSQGEG-GSTPF  206 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~s~~~  206 (365)
                      ...+.+|+++.|.|.+.+.|.+. +.|++++..+......+. ...+.+|.|.+++..|+|.|+|.+.+..+.. ....+
T Consensus        11 ~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~   89 (189)
T 2v5t_A           11 PQEFKQGEDAEVVCRVSSSPAPA-VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDI   89 (189)
T ss_dssp             SEEEETTSCEEECCEEECSSCCE-EEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEE
T ss_pred             CEEEeCCCcEEEEEEEcCCCCCE-EEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEE
Confidence            34688999999999999888776 999999988765333333 3346789999999999999999999887532 22455


Q ss_pred             EEEEeeeeecccccCCCCceecCcc-ceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEE
Q psy3823         207 DLNINKMVNLIFNSIDEPVCKQSQQ-RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVAR  285 (365)
Q Consensus       207 ~l~v~~~~~~~~~~~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~  285 (365)
                      .+.+.          .+|.+..... ....+..|+.+.|.|.+.+.|.+. +.|+++|..... ........+  ...|.
T Consensus        90 ~l~v~----------~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~-v~W~~~g~~~~~-~~~~~~~~~--~~~L~  155 (189)
T 2v5t_A           90 IVIVN----------VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA-ISWFRNGKLIEE-NEKYILKGS--NTELT  155 (189)
T ss_dssp             EEEEE----------EEEEEECSCCEEEEETTSCCCEEEECEEEEESCCE-EEEEETTEECCC-SSSEEEETT--TTEEE
T ss_pred             EEEec----------CCCCcccccccccccccCCCcEEEEEEEccCCCCe-EEEEECCEECcC-CCcEEEecC--CCEEE
Confidence            66666          5555543332 133477899999999999999998 999998874432 222222222  23599


Q ss_pred             EcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         286 YTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       286 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      |.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       156 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          156 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            999999999999999999999999988888763

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.90  E-value=7e-23  Score=167.68  Aligned_cols=169  Identities=15%  Similarity=0.254  Sum_probs=129.5

Q ss_pred             eCCceEEEEecCCcEEEEEEeCCCC-CcceEEEEe-CCCcCCCCC-CceeE-ecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          16 QSQQRIYGALRNEQVLVSCTVDANP-QAQYFTWAF-NNSGTAPRP-LTSYS-IQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        16 ~~~~~~~~v~~G~~~~l~C~~~~~p-~~~~v~W~~-~~~~~l~~~-~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      ...+....+.+|+.++|.|.+.+.| .+ .+.|++ ++.. +... ..... ........|.|.+++.+|+|.|+|.+.+
T Consensus         6 ~~~p~~~~v~~G~~v~l~C~~~~~~~~~-~v~W~~~~g~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (191)
T 1epf_A            6 DIVPSQGEISVGESKFFLCQVAGDAKDK-DISWFSPNGEK-LSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA   83 (191)
T ss_dssp             EEESSSEEEETTCCEEEEEEECCCSCCC-EEEEECTTSCE-ECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EecCCCcEEcCCCCEEEEEECCCCCCCc-eEEEEeCCCcc-ccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEc
Confidence            3345566789999999999987776 66 999999 7766 5432 22222 2234556899999999999999999999


Q ss_pred             CCC-CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCce
Q psy3823          92 EQG-NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR  170 (365)
Q Consensus        92 ~~~-~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~  170 (365)
                      ..+ .....+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+........
T Consensus        84 ~~~~~~~~~~~l~v---------~~~p~~~~~~----~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~~~~~~~~~~  149 (191)
T 1epf_A           84 EDGTQSEATVNVKI---------FQKLMFKNAP----TPQEFKEGEDAVIVCDVVSSLPPT-IIWKHKGRDVILKKDVRF  149 (191)
T ss_dssp             TTTEEEEEEEEEEE---------ECCSEEEECC----SSEECCTTSCEEECCEEECSSCCE-EEEEETTEEGGGGCCTTE
T ss_pred             CCCcceEEEEEEEe---------ecCceEecCC----CcEeecCCCeEEEEEEECCCCCCE-EEEEECCEEeeccCCceE
Confidence            874 3447778888         5677765544    234678999999999999998887 999999998865433333


Q ss_pred             -EEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         171 -IITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       171 -~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                       ...++.|.|.++...|+|.|+|.|.|..+.
T Consensus       150 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  180 (191)
T 1epf_A          150 IVLSNNYLQIRGIKKTDEGTYRCEGRILARG  180 (191)
T ss_dssp             EECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             EEecCCeEEECCCChhhCEEEEEEEEEecce
Confidence             334668999999999999999999998753

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.90  E-value=2.4e-22  Score=164.54  Aligned_cols=174  Identities=16%  Similarity=0.293  Sum_probs=131.6

Q ss_pred             ccceecCCcEEEEEEEEecCCCCeeEEEe-CCeEEeeCCCCceEE----eeceEEEeeecCCCCeEEEEEEEcCCCCCCc
Q psy3823         129 ASVLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGRII----TNQTLVLQSVTRHSGGLYACSAINSQGEGGS  203 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~-~~~~l~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s  203 (365)
                      ...+.+|+.+.|.|.+.+.++...+.|++ +|..+..........    ....|.|.+++..|+|.|+|.+.+..+...+
T Consensus        11 ~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   90 (191)
T 1epf_A           11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   90 (191)
T ss_dssp             SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             CcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceE
Confidence            34688999999999999877444599999 888887433322222    2468999999999999999999998865555


Q ss_pred             ccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC-ceeEeeCCCEE
Q psy3823         204 TPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL-TSYSIQDGSTS  282 (365)
Q Consensus       204 ~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~s  282 (365)
                      ..+.|.|.          .+|.+...+.... +..|+.+.|.|.+.+.|.+. +.|++++........ ......++   
T Consensus        91 ~~~~l~v~----------~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~---  155 (191)
T 1epf_A           91 ATVNVKIF----------QKLMFKNAPTPQE-FKEGEDAVIVCDVVSSLPPT-IIWKHKGRDVILKKDVRFIVLSNN---  155 (191)
T ss_dssp             EEEEEEEE----------CCSEEEECCSSEE-CCTTSCEEECCEEECSSCCE-EEEEETTEEGGGGCCTTEEECTTS---
T ss_pred             EEEEEEee----------cCceEecCCCcEe-ecCCCeEEEEEEECCCCCCE-EEEEECCEEeeccCCceEEEecCC---
Confidence            67788888          7777765443333 78999999999999999998 999998864432221 22222233   


Q ss_pred             EEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         283 VARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       283 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      .|.|.+++.+|+|.|+|.|.|..|.......+.|.
T Consensus       156 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~  190 (191)
T 1epf_A          156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI  190 (191)
T ss_dssp             CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             eEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence            49999999999999999999999766555555553

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.90  E-value=6.5e-23  Score=168.76  Aligned_cols=187  Identities=16%  Similarity=0.222  Sum_probs=137.1

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC-ceeE-ecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL-TSYS-IQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      +|.+.. .+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +.... .... ...+....|.|.+++.+|+|.|+|.
T Consensus         4 ~P~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            4 APHFKE-ELRNLNVRYQSNATLVCKVTGHPKP-IVKWYRQGKE-IIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCEEEE-CCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEE-CCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCEEEE-cCCccEEcCCCEEEEEEEEeecCCC-EEEEEECCEE-CccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence            455433 3455778999999999998788998 9999999988 55432 2222 2334456899999999999999999


Q ss_pred             EEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcC-CccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC
Q psy3823          89 ARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLG-RNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS  167 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~  167 (365)
                      +.+..+.....+.|.|.         .+|.+..... .......+.+|+.+.|.|.+.+.|.+. +.|++++..+.....
T Consensus        81 ~~n~~g~~~~~~~l~V~---------~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~  150 (197)
T 2j8h_A           81 ATNQGGSVSGTASLEVE---------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPV-ITWQKGQDLIDNNGH  150 (197)
T ss_dssp             EEETTEEEEEEEEEEEE---------EEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCE-EEEEESSCEECSSSS
T ss_pred             EEECCCceeEEEEEEEc---------CCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCc-EEEEECCEEeecCCC
Confidence            99988777777888873         3333211100 000223567899999999999998886 999999998875433


Q ss_pred             CceEE--eeceEEEee-ecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         168 AGRII--TNQTLVLQS-VTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       168 ~~~~~--~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      .....  ....|.|.+ +...|+|.|+|.|.|..|... ..+.|.|.
T Consensus       151 ~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~  196 (197)
T 2j8h_A          151 YQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ-KTVELDVA  196 (197)
T ss_dssp             CEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             EEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEe-EEEEEEEe
Confidence            32222  256899999 999999999999999998754 56666664

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.90  E-value=3.9e-23  Score=170.80  Aligned_cols=165  Identities=16%  Similarity=0.160  Sum_probs=119.4

Q ss_pred             EEEecCCcEEEEEE---eCCCCCcceEEEEeCCCcCCCCCC-----------------ceeEecCCeEEEEEEccCCCCC
Q psy3823          22 YGALRNEQVLVSCT---VDANPQAQYFTWAFNNSGTAPRPL-----------------TSYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        22 ~~v~~G~~~~l~C~---~~~~p~~~~v~W~~~~~~~l~~~~-----------------~~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      +.+..|++++|.|.   +.+.|.+ .++|+|++.. .....                 ............|.|.+++.+|
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~-~V~W~k~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEI-EVSWFKLGPG-EEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   80 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTS-EEEEEEEETT-TEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCc-EEEEEEcCCC-cceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence            56789999999995   6678899 9999998764 32110                 0011122345689999999999


Q ss_pred             CeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeE
Q psy3823          82 YGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGIT  161 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~  161 (365)
                      +|.|+|.|.|..+.....+.|.|         ..||.+...+    ....+.+|+.+.|.|.+.|.|.|. +.|++++..
T Consensus        81 ~G~Y~C~a~n~~g~~~~~~~l~V---------~~p~~~~~~~----~~~~v~~g~~~~l~C~~~G~P~P~-v~W~~~~~~  146 (203)
T 4fa8_A           81 DGNYLCRMKLGETEVTKQEHLSV---------VKPLTLSVHS----ERSQFPDFSVLTVTCTVNAFPHPH-VQWLMPEGV  146 (203)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEE---------EEEEEEEEEE----EECCSSCSCCEEEEEEEEEESCCE-EEECCC---
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEe---------cCCceeeecc----eeEEEcCCCEEEEEEEcCCCCCCE-EEEEECCee
Confidence            99999999998888778888988         5566665554    334678999999999999999987 999987655


Q ss_pred             EeeC--CCCc-eEEeeceEE---EeeecCCCCeEEEEEEEcCCCCCC
Q psy3823         162 ISNN--ASAG-RIITNQTLV---LQSVTRHSGGLYACSAINSQGEGG  202 (365)
Q Consensus       162 l~~~--~~~~-~~~~~~~l~---i~~~~~~d~G~Y~C~~~~~~~~~~  202 (365)
                      +...  ...+ ....+++|.   +.++..+|+|.|+|.|.|..|...
T Consensus       147 ~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          147 EPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             ---------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred             ecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence            4321  1112 233345544   468999999999999999999654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.90  E-value=1.8e-22  Score=168.01  Aligned_cols=185  Identities=16%  Similarity=0.179  Sum_probs=131.3

Q ss_pred             eecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe--eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      ..+++.+.|.|.+.+.++...+.|+++|..+...........  ...|.|.+++.+|+|.|+|.+.|..+... ..+.|.
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~-~~~~l~   92 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ-KTVDLS   92 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEE-EEEEEC
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceE-EEEEEE
Confidence            457889999999988664555999999999875433322222  24599999999999999999999766443 344443


Q ss_pred             Eeeeeec----------ccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE-eeC
Q psy3823         210 INKMVNL----------IFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS-IQD  278 (365)
Q Consensus       210 v~~~~~~----------~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~-~~~  278 (365)
                      +......          .+.....|.+.........+..|+.+.|.|.+.+.|.|. +.|++++...... ....+ ..+
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-v~W~~~~~~~~~~-~~~~~~~~~  170 (212)
T 2r15_A           93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKNEKALAQT-DHCNLKFEA  170 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCE-EEEEETTEEECCC-SSEEEEEET
T ss_pred             EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCce-EEEEECCeECccC-CCEEEEEcC
Confidence            3200000          000001333433333334488999999999999999998 9999998654332 33333 333


Q ss_pred             CCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         279 GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       279 ~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      +..+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+
T Consensus       171 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          171 GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            66778999999999999999999999999999988888743

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.90  E-value=2.1e-22  Score=177.45  Aligned_cols=189  Identities=19%  Similarity=0.298  Sum_probs=127.1

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe---eceEEEeeecC-CCCeE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT---NQTLVLQSVTR-HSGGL  189 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~---~~~l~i~~~~~-~d~G~  189 (365)
                      ..+|.+...+    .+..+.+|+.+.|.|.+.|.|.+. +.|+++|..+...........   ...|.|.++.. .|+|.
T Consensus         4 ~~~P~~~~~p----~~~~v~~G~~v~l~C~~~g~p~~~-i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~   78 (304)
T 2yd9_A            4 EEPPRFIKEP----KDQIGVSGGVASFVCQATGDPKPR-VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENV   78 (304)
T ss_dssp             CCCCEEEECC----CCEEEETTSCEEEEEEEECSSCCE-EEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSE
T ss_pred             ccCCeeeecC----CceEecCCCeEEEEEEEEEeCCCe-EEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeE
Confidence            4577766655    345788999999999999988876 999999988854211111112   25799999998 99999


Q ss_pred             EEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC
Q psy3823         190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR  269 (365)
Q Consensus       190 Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~  269 (365)
                      |+|.+.|..|... ..+.|.|......   ....|.+...+.. ..+..|+.+.|.|.+.+.|.+. +.|++++......
T Consensus        79 Y~C~a~n~~g~~~-~~~~l~V~~~~~~---p~~~p~i~~~~~~-~~v~~g~~v~l~C~~~g~p~~~-v~W~k~~~~~~~~  152 (304)
T 2yd9_A           79 YECVAQNSVGEIT-VHAKLTVLREDQL---PSGFPNIDMGPQL-KVVERTRTATMLCAASGNPDPE-ITWFKDFLPVDPS  152 (304)
T ss_dssp             EEEEEECSSCEEC-CEEEEEEECGGGC---CTTCCEEEECCCC-EEEETTSCEEECCEEECSSCCE-EEEEETTEECCGG
T ss_pred             EEEEEECCCCeEE-EEEEEEEeccccC---CCCCCeeecCCcc-EEEeCCCeEEEEEECccCCCCe-EEEEECCEECcCC
Confidence            9999999988643 6778888721000   0011444433333 3378899999999999999998 9999988654332


Q ss_pred             CCcee--EeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceec-EEEEE
Q psy3823         270 PLTSY--SIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP-CTFHV  316 (365)
Q Consensus       270 ~~~~~--~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~v  316 (365)
                      ....+  ...++   .|.|.+++.+|+|.|+|.|.|..|..... ..+.|
T Consensus       153 ~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v  199 (304)
T 2yd9_A          153 ASNGRIKQLRSG---ALQIESSEETDQGKYECVATNSAGVRYSSPANLYV  199 (304)
T ss_dssp             GGTTSEEECTTS---CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCcceEEeCCCe---EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEE
Confidence            21111  12222   59999999999999999999999976533 45544

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.89  E-value=9.5e-21  Score=178.85  Aligned_cols=268  Identities=13%  Similarity=0.170  Sum_probs=162.7

Q ss_pred             cCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCCC-CceeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823          26 RNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPRP-LTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGNQRTPC  100 (365)
Q Consensus        26 ~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~~-~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~  100 (365)
                      +|+.++|.|.+.+. |.+..++|++++.. .... .......++   ..+.|.|.+...+ .|.|+|.|.|..+......
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~-~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~  226 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQS-QPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEI  226 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCccc-CceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEE
Confidence            47899999996555 65338999997543 2110 010111122   2346888888777 9999999999887654322


Q ss_pred             -----------EEEEE-ec------------------------------------------cccCCCCCCCeEEEEcCCc
Q psy3823         101 -----------TFHVV-KA------------------------------------------GECEHPVDKPSVQIKLGRN  126 (365)
Q Consensus       101 -----------~l~V~-~~------------------------------------------~~~~~~~~~p~~~~~~~~~  126 (365)
                                 .+.+. ++                                          .+|.....+|.+.+.+.. 
T Consensus       227 ~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~-  305 (512)
T 1zvo_C          227 FRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPA-  305 (512)
T ss_pred             ecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCC-
Confidence                       23331 00                                          000011235665554432 


Q ss_pred             cCccceecCCcEEEEEEEEec-CCCCeeEEEeCCeEEeeCCC--------CceEEeeceEEEeeecCCCCeEEEEEEEcC
Q psy3823         127 LNASVLNEGVDIYFDCHIQAN-PPYKKLIWTHNGITISNNAS--------AGRIITNQTLVLQSVTRHSGGLYACSAINS  197 (365)
Q Consensus       127 ~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  197 (365)
                        ...+.+|+.++|.|.+.+. |+...|.|+++|..+.....        .+.....+.|.|.....+|+|.|+|.|.|.
T Consensus       306 --~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~  383 (512)
T 1zvo_C          306 --VQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHP  383 (512)
T ss_pred             --hHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeC
Confidence              2246689999999999985 43446999999987651110        111122356889999999999999999998


Q ss_pred             CCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEE-EEEEEeeeCCCc-eeEEEeCCCCCCCCCC---c
Q psy3823         198 QGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVL-VSCTVDANPQAQ-YFTWAFNNSDTAPRPL---T  272 (365)
Q Consensus       198 ~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-l~C~~~~~p~~~-~~~W~~~~~~~~~~~~---~  272 (365)
                      .+......+......      ....+|.+......   . .|+.+. |.|.+.|++++. .+.|+++|........   .
T Consensus       384 ~~~~~~~~~~~~~~~------~~~~~p~v~~~~~~---~-~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~  453 (512)
T 1zvo_C          384 SLPPQRLMALREPAA------QAPVKLSLNLLASS---D-PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPAR  453 (512)
T ss_pred             CCCCCceeEEeecCC------CCCCCCEEEEEccC---c-CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccc
Confidence            765431222111100      00134554432222   1 688899 999999865443 5899999875433211   1


Q ss_pred             eeEeeCCC----EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         273 SYSIQDGS----TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       273 ~~~~~~~~----~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      .....++.    .+.|.|.....+|.|.|+|.|.|.....
T Consensus       454 ~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~  493 (512)
T 1zvo_C          454 PPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRT  493 (512)
T ss_pred             eeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCC
Confidence            11223443    2567777777778999999999987553

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.89  E-value=8.2e-23  Score=166.85  Aligned_cols=175  Identities=19%  Similarity=0.294  Sum_probs=125.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC--ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      +....+.+|+.++|.|.+.+.|.+ .+.|++++.. +....  ......++   .|.|.+++.+|+|.|+|.+.+..+..
T Consensus         9 ~~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~   83 (189)
T 2v5t_A            9 VSPQEFKQGEDAEVVCRVSSSPAP-AVSWLYHNEE-VTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGE   83 (189)
T ss_dssp             CSSEEEETTSCEEECCEEECSSCC-EEEEEC------CBCCCTTEEECTTS---CEEETTCCGGGCEEEEEEEEETTTTE
T ss_pred             CCCEEEeCCCcEEEEEEEcCCCCC-EEEEEECCcc-ceeccCCeEEEecCC---CEEEeeCCHhHCcEEEEEEEEcCCCc
Confidence            344568999999999998788888 9999999987 54322  22222344   69999999999999999999877544


Q ss_pred             c--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEee
Q psy3823          97 R--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN  174 (365)
Q Consensus        97 ~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~  174 (365)
                      .  ..+.+.|         ..+|.+......  ....+.+|+.+.|.|.+.+.|.+. +.|+++|..+...........+
T Consensus        84 ~~~~~~~l~v---------~~~p~~~~~~~~--~~~~~~~g~~v~l~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~  151 (189)
T 2v5t_A           84 IDFRDIIVIV---------NVPPAISMPQKS--FNATAERGEEMTFSCRASGSPEPA-ISWFRNGKLIEENEKYILKGSN  151 (189)
T ss_dssp             EEEEEEEEEE---------EEEEEEECSCCE--EEEETTSCCCEEEECEEEEESCCE-EEEEETTEECCCSSSEEEETTT
T ss_pred             eEEEEEEEEe---------cCCCCccccccc--ccccccCCCcEEEEEEEccCCCCe-EEEEECCEECcCCCcEEEecCC
Confidence            3  4455655         334544322111  123567899999999999988886 9999999988754332222235


Q ss_pred             ceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         175 QTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       175 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      ..|.|.++..+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       152 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~  187 (189)
T 2v5t_A          152 TELTVRNIINSDGGPYVCRATNKAGEDE-KQAFLQVF  187 (189)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             CEEEEcCCChhhCeeEEEEEEeCCCcee-EEEEEEEE
Confidence            6899999999999999999999988655 45666664

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.89  E-value=4.1e-22  Score=165.12  Aligned_cols=160  Identities=19%  Similarity=0.248  Sum_probs=125.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      +....+.+|+.++|.|.+.+.|.+..+.|++++.. +....          ..|.|.+++.+|+|.|+|.+.+.  ....
T Consensus        14 p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~-l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n~--~~s~   80 (204)
T 3sgj_C           14 PQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESL-ISSQA----------SSYFIDAATVDDSGEYRCQTQLS--TLSD   80 (204)
T ss_dssp             SCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEE-ESCCS----------SEEEESSCCGGGCEEEEEEETTS--BCCC
T ss_pred             CCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEE-cccCc----------cEEEEecccccCCEEEEEEeCCC--cccc
Confidence            34466889999999999888887735999999987 54332          38999999999999999999863  3446


Q ss_pred             cEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEE
Q psy3823          99 PCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLV  178 (365)
Q Consensus        99 ~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~  178 (365)
                      .+.|.|         ..+|.+...     ....+.+|+.++|.|.+.+.++...+.|+++|..+..      ...+..|.
T Consensus        81 ~~~l~V---------~~~p~~~~~-----~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~------~~~~~~L~  140 (204)
T 3sgj_C           81 PVQLEV---------HIGWLLLQA-----PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY------FHHNSDFY  140 (204)
T ss_dssp             CEEEEE---------ECSSEEEEC-----SCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE------EEECCCEE
T ss_pred             cEEEEE---------ecCceEecC-----CceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec------ccCCceEE
Confidence            788888         455654332     2246789999999999987655555999999998753      23457899


Q ss_pred             EeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         179 LQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       179 i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      |.+++.+|+|.|+|.+.|..+...+..+.|.|.
T Consensus       141 i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (204)
T 3sgj_C          141 IPKATLKDSGSYFCRGLVGSKNVSSETVQITIT  173 (204)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ECcCCcccCEEEEEEEEeCCCceecCcEEEEEe
Confidence            999999999999999999655555577888887

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=1.3e-21  Score=159.12  Aligned_cols=167  Identities=15%  Similarity=0.300  Sum_probs=127.9

Q ss_pred             ceecCCcEEEEEEEEecCCCC-eeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         131 VLNEGVDIYFDCHIQANPPYK-KLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~-~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      .+.+|+.++|.|.+.+.+.+. .+.|++++..+.......   ....|.|.  +.+|+|.|+|.+.|.    ....+.|.
T Consensus         9 ~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~---~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~   79 (184)
T 3b5h_A            9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG---QKTEFKVD--SDDQWGEYSCVFLPE----PMGTANIQ   79 (184)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC---SEEEEEEC--GGGCCEEEEEEEEST----TSCEEEEE
T ss_pred             EEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC---CcEEEEEe--chhhCeEEEEEEECC----cCcEEEEE
Confidence            578999999999999876652 499999999887543221   13345555  689999999999982    22567888


Q ss_pred             EeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeC-CCceeEEEe---CCCCCCCCC--CceeEeeCCCEEE
Q psy3823         210 INKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP-QAQYFTWAF---NNSDTAPRP--LTSYSIQDGSTSV  283 (365)
Q Consensus       210 v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~W~~---~~~~~~~~~--~~~~~~~~~~~s~  283 (365)
                      |.          .+|.+....... .+..|+.+.|.|.+.+.| .+. +.|++   ++.......  .++.+..++..+.
T Consensus        80 V~----------~~P~~~~~~~~~-~~~~g~~~~l~C~~~g~p~~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (184)
T 3b5h_A           80 LH----------GPPRVKAVKSSE-HINEGETAMLVCKSESVPPVTD-WAWYKITDSEDKALMNGSESRFFVSSSQGRSE  147 (184)
T ss_dssp             EC----------CSCCCEESCSEE-EECTTSCEEEEEECCCSSCCCE-EEEEECCSSSCEECCTTGGGTEEEEEETTEEE
T ss_pred             Ee----------cCCceeecCCCc-EEcCCCcEEEEEEECCCCCCCe-EEEEEcCCCCCEEeecCCCCEEEEEecCCeeE
Confidence            88          888877655333 388999999999999999 677 99999   454332222  3344555666778


Q ss_pred             EEEcCCC-cccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         284 ARYTPTS-ELEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       284 l~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      |.|.+++ .+|+|.|+|.|.|..|.....+.|.|..
T Consensus       148 L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          148 LHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             EEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             EEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence            9999999 8999999999999999998888887753

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.89  E-value=6.1e-22  Score=159.95  Aligned_cols=162  Identities=18%  Similarity=0.250  Sum_probs=125.5

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .++....+.+|+.++|.|.+.+.|.+..+.|++++.. +..       .+.   .|.|.+++.+|+|.|+|.+.+..+  
T Consensus        12 ~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~-~~~-------~~~---~L~i~~~~~~d~G~Y~C~~~n~~~--   78 (175)
T 1fnl_A           12 LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESL-ISS-------QAS---SYFIDAATVNDSGEYRCQTNLSTL--   78 (175)
T ss_dssp             EESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEE-EES-------SCS---EEEESSCCGGGCEEEEEECSSSCC--
T ss_pred             EcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEE-ccC-------Cce---EEEEeCCCcccCEEEEEEeeCCcc--
Confidence            3444457889999999999888887735899999877 442       223   899999999999999999987433  


Q ss_pred             cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeece
Q psy3823          97 RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT  176 (365)
Q Consensus        97 ~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~  176 (365)
                      ...+.|.|         ..+|. .+..    ....+.+|+.+.|.|.+.+.+++..+.|+++|..+..      ......
T Consensus        79 s~~~~l~V---------~~~~~-~~~~----~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~------~~~~~~  138 (175)
T 1fnl_A           79 SDPVQLEV---------HIGWL-LLQA----PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------FHHNSD  138 (175)
T ss_dssp             CCCEEEEE---------ECSSE-EEEC----SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------EEECCC
T ss_pred             cccEEEEE---------eCCCc-eeeC----CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC------CCCCCE
Confidence            46788888         33343 3333    2235789999999999998777655999999998853      234678


Q ss_pred             EEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         177 LVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       177 l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      |.|.+++.+|+|.|+|.|.|..+...+..+.|.|.
T Consensus       139 L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          139 FHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence            99999999999999999999877655577778776

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.89  E-value=8e-23  Score=170.09  Aligned_cols=191  Identities=16%  Similarity=0.292  Sum_probs=136.3

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-----eeEecCCeEE--EEEEccCCCCCCe
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-----SYSIQDGSTS--VARYTPTSELEYG   83 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-----~~~~~~~~~~--~l~i~~~~~~d~G   83 (365)
                      +|.+ ...+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +.....     .....++...  .|.|.+++.+|+|
T Consensus         9 pp~i-~~~p~~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   85 (212)
T 2v9r_A            9 PPRI-VEHPSDLIVSKGEPATLNCKAEGRPTP-TIEWYKGGER-VETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (212)
T ss_dssp             EEEE-EECCCCEEECTTCCEEECCEEEEESCC-EEEEEETTEE-CCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred             Ccce-ecCCCceEEeCCCcEEEEEEcCCCCCC-EEEEEECCEE-eeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence            3443 344556778999999999998788999 9999999887 543321     1222333322  3455678999999


Q ss_pred             EEEEEEEeCCCCC-cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE-EecCCCCeeEEEeCCeE
Q psy3823          84 TLLCWARNEQGNQ-RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-QANPPYKKLIWTHNGIT  161 (365)
Q Consensus        84 ~Y~C~a~~~~~~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~i~W~~~~~~  161 (365)
                      .|+|.+.+..+.. ...+.|.|..        .+|.+...+    ....+.+|+.+.|.|.+ .+.|.+. +.|++++..
T Consensus        86 ~Y~C~~~n~~g~~~~~~~~l~V~~--------~~~~~~~~~----~~~~~~~g~~~~l~C~~~~~~p~~~-v~W~~~~~~  152 (212)
T 2v9r_A           86 VYVCVARNYLGEAVSHDASLEVAI--------LRDDFRQNP----SDVMVAVGEPAVMECQPPRGHPEPT-ISWKKDGSP  152 (212)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECE--------ECSSCSBCC----CCEEEETTSCEEEECBCCCEESCCE-EEEEETTEE
T ss_pred             EEEEEEECCCCceeecceEEEEEe--------ccccceeCC----CceEecCCCcEEEEEecCCCCCCCE-EEEEECCcc
Confidence            9999999987765 3667777721        122222211    23467899999999998 7888876 999999999


Q ss_pred             EeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceec
Q psy3823         162 ISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQ  228 (365)
Q Consensus       162 l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~  228 (365)
                      +.... ......++.|.|.++...|+|.|+|.+.|..|...+..+.|.|.          .+|.+..
T Consensus       153 l~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~----------~~P~~~~  208 (212)
T 2v9r_A          153 LDDKD-ERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL----------ERPSFVK  208 (212)
T ss_dssp             ECTTS-TTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE----------C------
T ss_pred             CCCCc-ceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE----------eCchHhh
Confidence            87533 23455678999999999999999999999998766566889998          7887654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.88  E-value=5.7e-23  Score=169.83  Aligned_cols=167  Identities=16%  Similarity=0.144  Sum_probs=119.5

Q ss_pred             cceecCCcEEEEEEE---EecCCCCeeEEEeCCeEEee------CC---------CCce--EE--eeceEEEeeecCCCC
Q psy3823         130 SVLNEGVDIYFDCHI---QANPPYKKLIWTHNGITISN------NA---------SAGR--II--TNQTLVLQSVTRHSG  187 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~---~~~p~~~~i~W~~~~~~l~~------~~---------~~~~--~~--~~~~l~i~~~~~~d~  187 (365)
                      +.+..|+.++|.|..   .+.|.+. +.|+++|..+..      ..         ....  ..  ....|.|.+++..|+
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~-V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIE-VSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSE-EEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcE-EEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            367899999999964   4667776 999997642210      00         0001  11  135799999999999


Q ss_pred             eEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCC
Q psy3823         188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA  267 (365)
Q Consensus       188 G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~  267 (365)
                      |.|+|.+.|..|... ..+.|.|.          .+|.+...+.. ..+.+|+.+.|.|.+.|.|.|. +.|+++++...
T Consensus        82 G~Y~C~a~n~~g~~~-~~~~l~V~----------~p~~~~~~~~~-~~v~~g~~~~l~C~~~G~P~P~-v~W~~~~~~~~  148 (203)
T 4fa8_A           82 GNYLCRMKLGETEVT-KQEHLSVV----------KPLTLSVHSER-SQFPDFSVLTVTCTVNAFPHPH-VQWLMPEGVEP  148 (203)
T ss_dssp             EEEEEEEEETTEEEE-EEEEEEEE----------EEEEEEEEEEE-CCSSCSCCEEEEEEEEEESCCE-EEECCC-----
T ss_pred             eEEEEEEEcCCCcEE-EEEEEEec----------CCceeeeccee-EEEcCCCEEEEEEEcCCCCCCE-EEEEECCeeec
Confidence            999999999887655 56778887          55555443333 3378999999999999999998 99998765443


Q ss_pred             CC---CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823         268 PR---PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT  310 (365)
Q Consensus       268 ~~---~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~  310 (365)
                      ..   ..+.....++....+.|.++..+|+|.|+|.|.|.+|.++.
T Consensus       149 ~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          149 APTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             -------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             CcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            22   12234456777777888899999999999999999998864

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.88  E-value=1.1e-22  Score=170.00  Aligned_cols=189  Identities=18%  Similarity=0.309  Sum_probs=133.5

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC---ceeEecCC-eEEEEEEccCCCCCCe
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL---TSYSIQDG-STSVARYTPTSELEYG   83 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~---~~~~~~~~-~~~~l~i~~~~~~d~G   83 (365)
                      +.+.|......+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +....   ......++ ....|.|.+++.+|+|
T Consensus         5 ~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~-~v~W~~~g~~-~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G   82 (217)
T 2vr9_A            5 GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEP-TIEWFKDGEP-VSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGG   82 (217)
T ss_dssp             -CCCCCEEEECCCCEEECTTSCEEECCEEECSSCC-EEEEEETTEE-CCCSSSSSSEEECTTSCEEESSCCBSSSCBCCE
T ss_pred             cccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCC-eEEEEECCcC-ccCCCccceeEEecCCceEEEEEeccCCcccCc
Confidence            44544444445566778999999999998788988 9999999987 65432   11222233 2223478899999999


Q ss_pred             EEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE-EecCCCCeeEEEeCCeE
Q psy3823          84 TLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-QANPPYKKLIWTHNGIT  161 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~i~W~~~~~~  161 (365)
                      .|+|.+.+..+... ..+.|.|..        .+|.+...+    ....+.+|+.+.|.|.+ .+.|.+. +.|++++..
T Consensus        83 ~Y~C~~~n~~g~~~~~~~~l~v~~--------~~~~~~~~~----~~~~~~~g~~v~l~C~~~~g~p~~~-v~W~~~g~~  149 (217)
T 2vr9_A           83 EYWCVAKNRVGQAVSRHASLQIAV--------LRDDFRVEP----KDTRVAKGETALLECGPPKGIPEPT-LIWIKDGVP  149 (217)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECE--------ECCSCSBCC----CCEEECTTSCEEECCBCCCEESCCE-EEEEETTEE
T ss_pred             eEEEEEecCCCccccccceEEEEE--------eCCCcEECC----CccEEcCCCeEEEEEECCCCCCCCe-EEEEECCcC
Confidence            99999999877653 566676621        133322222    23457889999999998 7888877 999999998


Q ss_pred             EeeCC-------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         162 ISNNA-------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       162 l~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      +....       .......+++|.|.+++.+|+|.|+|.|.|..|...+....|.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          150 LDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             ECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence            87322       111223456899999999999999999999999766444444443

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.88  E-value=3.3e-22  Score=171.52  Aligned_cols=207  Identities=14%  Similarity=0.107  Sum_probs=115.5

Q ss_pred             CCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC-----CC
Q psy3823          77 TSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP-----YK  151 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-----~~  151 (365)
                      ++.+|+|.|+|.|.   |.....+.+.+         ..+|.+...+    ....+.+|++++|.|.+.+.++     +.
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~---------~~~~~~~~~p----~~~~v~~G~~v~L~C~~~~~~~~~~~~~~   74 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNW---------LRELVMTQSP----LTLSVTIGQPASISCKSSQSLLYSNGKTY   74 (254)
T ss_dssp             ---------------------------------------CCCEEEEC----SEEEECTTSCEEEEEEESSCCBCSSSCBC
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhhe---------eeceeEEeCC----ceEEecCCCcEEEEeeccCcccccCCCCc
Confidence            57789999999998   33333444444         2345544433    3357889999999999988773     45


Q ss_pred             eeEEEeC--CeEEe----------eCCCCceEEe----eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeee
Q psy3823         152 KLIWTHN--GITIS----------NNASAGRIIT----NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVN  215 (365)
Q Consensus       152 ~i~W~~~--~~~l~----------~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~  215 (365)
                       +.|+++  +..+.          .....+....    ..+|.|.+++..|+|.|+|.+.|..+........+.|..   
T Consensus        75 -v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~---  150 (254)
T 2c1o_A           75 -LNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR---  150 (254)
T ss_dssp             -EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECC---
T ss_pred             -eEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECC---
Confidence             999973  33221          0001122221    338999999999999999999987654333344566651   


Q ss_pred             cccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeCCCCCCCC-CCceeE--eeCCC---EEEEEEcC
Q psy3823         216 LIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSDTAPR-PLTSYS--IQDGS---TSVARYTP  288 (365)
Q Consensus       216 ~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~-~~~~~~--~~~~~---~s~l~i~~  288 (365)
                          ...+|.+........ ...|+.++|.|.+.+.+++ ..+.|+++|...... ......  ..++.   .+.|.|.+
T Consensus       151 ----~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~  225 (254)
T 2c1o_A          151 ----ADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK  225 (254)
T ss_dssp             ----CCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEH
T ss_pred             ----CCCCCeeEeecCChh-hccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEecc
Confidence                012565543222212 3467899999999885433 249999998754322 011111  11222   46799999


Q ss_pred             CCcccCeEEEEEEEcCCccc
Q psy3823         289 TSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       289 v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      +..+|+|.|+|.|.|.....
T Consensus       226 ~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          226 DEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             HHHHTCCEEEEEEECTTCSS
T ss_pred             ccccCCCeEEEEEEcCCCCC
Confidence            99999999999999987654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.88  E-value=4e-22  Score=165.94  Aligned_cols=180  Identities=13%  Similarity=0.192  Sum_probs=128.3

Q ss_pred             ecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEE
Q psy3823          25 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFH  103 (365)
Q Consensus        25 ~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~  103 (365)
                      -+|+.+.|.|.+.+. |.+ .++|++++.. +...........+....|.|.+++.+|+|.|+|.+.+..+.....+.|.
T Consensus        15 c~~~~~~l~C~~~~~~p~~-~i~W~~~g~~-i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~   92 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDL-KVNWSHNGSA-IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS   92 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSC-EEEEEETTEE-CCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             EcCceEEEEEEEeccCCCc-eEEEEECCEE-ccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEE
Confidence            367888888886654 567 9999999988 7665554444445556799999999999999999999776655556665


Q ss_pred             EEecccc-----------CCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE
Q psy3823         104 VVKAGEC-----------EHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII  172 (365)
Q Consensus       104 V~~~~~~-----------~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~  172 (365)
                      |......           ......|.+.....   ....+.+|+.+.|.|.+.|.|.+. +.|++++..+..........
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~v~~g~~~~l~C~~~g~p~p~-v~W~~~~~~~~~~~~~~~~~  168 (212)
T 2r15_A           93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP---DVVTIQEGKALNLTCNVWGDPPPE-VSWLKNEKALAQTDHCNLKF  168 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCC---SEEEEETTCCEEEEEEEECSSCCE-EEEEETTEEECCCSSEEEEE
T ss_pred             EeeccchhhhccccCcccccccCCCcccccCC---CcEEEccCCeEEEEEEEcCCCCce-EEEEECCeECccCCCEEEEE
Confidence            4100000           00001333333221   234688999999999999998888 99999999987644322222


Q ss_pred             e---eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         173 T---NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       173 ~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      .   ...|.|.++...|+|.|+|.|.|..|... ..+.|.|.
T Consensus       169 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~  209 (212)
T 2r15_A          169 EAGRTAYFTINGVSTADSGKYGLVVKNKYGSET-SDFTVSVF  209 (212)
T ss_dssp             ETTTEEEEEESSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             cCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEE-EEEEEEEE
Confidence            2   23899999999999999999999998654 56677766

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.4e-21  Score=163.62  Aligned_cols=172  Identities=16%  Similarity=0.265  Sum_probs=133.5

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      ..+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +....      .   ..|.|.+++.+|+|.|+|.+.+..+..
T Consensus        23 ~~p~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~-~~~~~------~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~   91 (218)
T 3k0w_A           23 VNPESKAVLAGQFVKLCCRATGHPFV-QYQWFKMNKE-IPNGN------T---SELIFNAVHVKDAGFYVCRVNNNFTFE   91 (218)
T ss_dssp             ECCCCEEEETTSBEEEECEETTTTSS-EEEEEETTEE-CTTCC------S---SEEEETTCCGGGCEEEEEEEECTTCCE
T ss_pred             ECCCCeEEeCCCcEEEEeeecCCCCC-EEEEEECCEE-CCCCC------C---CEEEEccCChhhCeEeEEEEEcCCCCc
Confidence            34566778999999999998889998 9999999987 54321      2   279999999999999999999987754


Q ss_pred             -cccEEEEEEeccccC------CCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc
Q psy3823          97 -RTPCTFHVVKAGECE------HPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG  169 (365)
Q Consensus        97 -~~~~~l~V~~~~~~~------~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~  169 (365)
                       ...+.|.|.......      .+..+|.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+....   
T Consensus        92 ~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~v~~G~~v~L~C~~~g~p~~~-v~W~~~~~~~~~~~---  163 (218)
T 3k0w_A           92 FSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP----TSQKLMPGSTLVLQCVAVGSPIPH-YQWFKNELPLTHET---  163 (218)
T ss_dssp             ECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECC----CCEEECTTCCEEEECEEEBSSCCE-EEEEETTEECTTCC---
T ss_pred             eeeEEEEEEEccCcccccccccccCCCceEEECC----CceeecCCCcEEEEEEecccCCCe-EEEEECCEECCCCC---
Confidence             366788874321100      001225554443    334678999999999999988887 99999998886432   


Q ss_pred             eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         170 RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       170 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                          ...|.|.+++..|+|.|+|.+.|..|...+..+.|.|.
T Consensus       164 ----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          164 ----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             ----SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             ----CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence                35899999999999999999999988766678888887

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.88  E-value=9.3e-21  Score=178.93  Aligned_cols=280  Identities=12%  Similarity=0.098  Sum_probs=164.4

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCC----cceEEEEeCC--CcCCC------C----------CCceeEec--CCeEEEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQ----AQYFTWAFNN--SGTAP------R----------PLTSYSIQ--DGSTSVAR   73 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~----~~~v~W~~~~--~~~l~------~----------~~~~~~~~--~~~~~~l~   73 (365)
                      ++..+.+.+|+.++|.|...+.+.    . .+.|||..  .. +.      .          ..+.....  ......|.
T Consensus         6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~-~v~W~rq~~g~~-~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (512)
T 1zvo_C            6 ESGPGLVKPSETLSLTCIVSGGPIRRTGY-YWGWIRQPPGKG-LEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLN   83 (512)
T ss_pred             CCCCEEEcCCCCEEEEEEEcccccCCCCe-eEEEEEeCCCCC-cEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEE
Confidence            345677899999999999655432    4 89999863  21 10      0          01111111  22346899


Q ss_pred             EccCCCCCCeEEEEEEEeCCC-----------C--CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEE
Q psy3823          74 YTPTSELEYGTLLCWARNEQG-----------N--QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF  140 (365)
Q Consensus        74 i~~~~~~d~G~Y~C~a~~~~~-----------~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l  140 (365)
                      |.+++.+|+|.|.|.+.+..+           .  ......|+|...     +..+|.+......   ......|+.++|
T Consensus        84 I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~-----~~~~P~i~~~~~~---~~~~~~~~~v~L  155 (512)
T 1zvo_C           84 LRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSA-----PTKAPDVFPIISG---CRHPKDNSPVVL  155 (512)
T ss_pred             ECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEeccc-----CCcCCeEEeccCC---cccccCCCeEEE
Confidence            999999999999999987642           1  114467777311     1134554422111   010224689999


Q ss_pred             EEEEEec-CCCCeeEEEeCCeEEeeCCC------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCccc--------
Q psy3823         141 DCHIQAN-PPYKKLIWTHNGITISNNAS------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTP--------  205 (365)
Q Consensus       141 ~C~~~~~-p~~~~i~W~~~~~~l~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~--------  205 (365)
                      .|.+.+. |.+..+.|++++........      .+.....+.|.|.....+ .|.|+|.+.|..+......        
T Consensus       156 ~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~  234 (512)
T 1zvo_C          156 ACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPK  234 (512)
T ss_pred             EEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCC
Confidence            9999986 55545999996543210000      111122346888877777 9999999999887543111        


Q ss_pred             --EEEEEeeeee---cc---------------------------------------cccCCCCceecCccceeeeecCce
Q psy3823         206 --FDLNINKMVN---LI---------------------------------------FNSIDEPVCKQSQQRIYGALRNEQ  241 (365)
Q Consensus       206 --~~l~v~~~~~---~~---------------------------------------~~~~~~p~~~~~~~~~~~~~~g~~  241 (365)
                        +.+.+..+..   .+                                       .....+|.+....+....+..|+.
T Consensus       235 ~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~  314 (512)
T 1zvo_C          235 AQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDK  314 (512)
T ss_pred             cCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCc
Confidence              1223320000   00                                       000123333222211112567999


Q ss_pred             EEEEEEEeeeCC-CceeEEEeCCCCCCCCCC--ceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         242 VLVSCTVDANPQ-AQYFTWAFNNSDTAPRPL--TSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       242 ~~l~C~~~~~p~-~~~~~W~~~~~~~~~~~~--~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ++|.|.+.+.++ ...+.|+++|........  ......++.   .+.|.|..+..+|.|.|+|.|.|..+..
T Consensus       315 ~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~  387 (512)
T 1zvo_C          315 ATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP  387 (512)
T ss_pred             eEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence            999999988643 335999999875321111  111122332   3569999999999999999999998764

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.88  E-value=6.8e-22  Score=162.73  Aligned_cols=185  Identities=15%  Similarity=0.192  Sum_probs=127.9

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc-eEEeeceEEEeeecCCCCeEEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG-RIITNQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C  192 (365)
                      ..+|.+...+..     .+.+|++++|.|.+.+ +.+. +.|++++..+....... .......|.|.+++..|+|.|+|
T Consensus         3 ~~~P~i~~~p~~-----~v~~G~~v~L~C~~~~-~~~~-~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   75 (196)
T 3p2t_A            3 LPKPTLWAEPGS-----VISWGNSVTIWCQGTL-EARE-YRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRC   75 (196)
T ss_dssp             BCCCEEEEESCS-----EEETTCCEEEEEECCT-TCCE-EEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCEEEccCCC-----cCCCCCcEEEEeeCCC-CCCE-EEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEE
Confidence            447777766532     6889999999999887 5454 99999988764311110 11235789999999999999999


Q ss_pred             EEEcCCC-CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC
Q psy3823         193 SAINSQG-EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL  271 (365)
Q Consensus       193 ~~~~~~~-~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~  271 (365)
                      .+.|..+ ...+..+.|.|..       ...+|.+...+..  .+.+|+.++|.|.+.+. ++. +.|+++|........
T Consensus        76 ~a~n~~g~~~~s~~~~l~V~~-------~~~~p~~~~~~~~--~v~~G~~v~L~C~~~~~-~~~-~~w~k~g~~~~~~~~  144 (196)
T 3p2t_A           76 YYRSPVGWSQPSDPLELVMTG-------AYSKPTLSALPSP--LVTSGKSVTLLCQSRSP-MDT-FLLCKERAAHPLLCL  144 (196)
T ss_dssp             EEEETTEEBCCCCCEEEEEEC-------SSCCCEEEEESCS--EECTTCCEEEEEEEEEE-EEE-EEEEETTCCCGGGSE
T ss_pred             EEeCCCcccCCCccEEEEecC-------CCCCCEEEeCCcc--eecCCCeEEEEEecCCC-CCE-EEEEeCCCcccceee
Confidence            9999987 3445677888861       0124444433322  37899999999999874 455 999998864432221


Q ss_pred             ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc-----cceecEEEEE
Q psy3823         272 TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG-----SQRTPCTFHV  316 (365)
Q Consensus       272 ~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v  316 (365)
                      ............|.|.+++.+|+|.|+|.|.|..+     ..+..+.|.|
T Consensus       145 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  194 (196)
T 3p2t_A          145 RSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV  194 (196)
T ss_dssp             EEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred             cccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence            11111222345699999999999999999999986     2344555554

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.88  E-value=2.2e-21  Score=159.62  Aligned_cols=172  Identities=15%  Similarity=0.197  Sum_probs=124.9

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC--CcccE
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN--QRTPC  100 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~--~~~~~  100 (365)
                      .+.+|++++|.|.+.+ |.+ .+.|+|++.. +..... ..........|.|.+++.+|+|.|+|.|.|..+.  ....+
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~-~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~   90 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAR-EYRLDKEESP-APWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPL   90 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCC-EEEEEETTSC-SCSEEE-CCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCE
T ss_pred             cCCCCCcEEEEeeCCC-CCC-EEEEEECCCC-Cccccc-ccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccE
Confidence            6789999999999876 667 9999999987 543211 1112234568999999999999999999998873  34677


Q ss_pred             EEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc---eEEeeceE
Q psy3823         101 TFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG---RIITNQTL  177 (365)
Q Consensus       101 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~---~~~~~~~l  177 (365)
                      .|.|...      ..+|.+...+.     ..+.+|+.++|.|.+.+.+ +. +.|+++|..+.......   .......|
T Consensus        91 ~l~V~~~------~~~p~~~~~~~-----~~v~~G~~v~L~C~~~~~~-~~-~~w~k~g~~~~~~~~~~~~~~~~~~~~L  157 (196)
T 3p2t_A           91 ELVMTGA------YSKPTLSALPS-----PLVTSGKSVTLLCQSRSPM-DT-FLLCKERAAHPLLCLRSEHGAQQHQAEF  157 (196)
T ss_dssp             EEEEECS------SCCCEEEEESC-----SEECTTCCEEEEEEEEEEE-EE-EEEEETTCCCGGGSEEEEEEEEEEEEEE
T ss_pred             EEEecCC------CCCCEEEeCCc-----ceecCCCeEEEEEecCCCC-CE-EEEEeCCCcccceeecccccccCcceEE
Confidence            8887311      23566655442     2578999999999998743 34 99999998664322111   12236789


Q ss_pred             EEeeecCCCCeEEEEEEEcCCC----CCCcccEEEEEe
Q psy3823         178 VLQSVTRHSGGLYACSAINSQG----EGGSTPFDLNIN  211 (365)
Q Consensus       178 ~i~~~~~~d~G~Y~C~~~~~~~----~~~s~~~~l~v~  211 (365)
                      .|.+++.+|+|.|+|.|.|..+    ...+..+.|.|.
T Consensus       158 ~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          158 PMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             EECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             EeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            9999999999999999999876    344556666653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.88  E-value=8.8e-22  Score=163.09  Aligned_cols=168  Identities=15%  Similarity=0.198  Sum_probs=128.4

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEE
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSA  194 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  194 (365)
                      .+|.+.+.+..    ..+.+|+.+.|.|.+.+.|.+..+.|+++|..+...        ...|.|.+++.+|+|.|+|.+
T Consensus         6 p~p~i~~~p~~----~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~--------~~~L~i~~v~~~D~G~Y~C~a   73 (204)
T 3sgj_C            6 PKAVVFLEPQW----YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ--------ASSYFIDAATVDDSGEYRCQT   73 (204)
T ss_dssp             CBCEEEEESCC----SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC--------SSEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEEcCCC----eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC--------ccEEEEecccccCCEEEEEEe
Confidence            46677776632    468899999999999998877669999999988642        278999999999999999999


Q ss_pred             EcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCce
Q psy3823         195 INSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTS  273 (365)
Q Consensus       195 ~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~  273 (365)
                      .|..   .+..+.|.|.          ..|.+...+.  ..+.+|+.++|.|.+.+. |.+. +.|+++|....      
T Consensus        74 ~n~~---~s~~~~l~V~----------~~p~~~~~~~--~~v~~G~~v~L~C~~~~~~p~~~-v~W~k~g~~~~------  131 (204)
T 3sgj_C           74 QLST---LSDPVQLEVH----------IGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHK-VTYLQNGKGRK------  131 (204)
T ss_dssp             TTSB---CCCCEEEEEE----------CSSEEEECSC--SEEETTCCEEEEEEEGGGCCCEE-EEEEETTEEEE------
T ss_pred             CCCc---ccccEEEEEe----------cCceEecCCc--eeEeCCCcEEEEEEecCCCCCce-EEEEECCcEee------
Confidence            8742   3356788888          7776554433  237899999999999766 4566 99999876421      


Q ss_pred             eEeeCCCEEEEEEcCCCcccCeEEEEEEEc-CCccceecEEEEEEcC
Q psy3823         274 YSIQDGSTSVARYTPTSELEYGTLLCWARN-EQGSQRTPCTFHVVKA  319 (365)
Q Consensus       274 ~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~v~~~  319 (365)
                       .  ......|.|.+++.+|+|.|+|.|.| ..+..+..+.|.|..+
T Consensus       132 -~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (204)
T 3sgj_C          132 -Y--FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQG  175 (204)
T ss_dssp             -E--EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             -c--ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCc
Confidence             1  11123599999999999999999999 4456677788888644

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.88  E-value=3.6e-22  Score=166.08  Aligned_cols=177  Identities=16%  Similarity=0.305  Sum_probs=129.7

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEe----------eCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITIS----------NNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~----------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      ..+.+|+.+.|.|.+.+.|.+. +.|++++..+.          .....+.......|.|.+++..|+|.|+|.+.+..|
T Consensus        11 ~~v~~G~~v~L~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~g   89 (212)
T 1f97_A           11 VQVPENESIKLTCTYSGFSSPR-VEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGG   89 (212)
T ss_dssp             EEEETTCCEEEECEEESCSSEE-EEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTS
T ss_pred             eEEEcCCCEEEEeEeCCCCCcE-EEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEccCC
Confidence            4678999999999999877766 99999765531          112233445568999999999999999999999876


Q ss_pred             CC-CcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEE-EeeeCCCceeEEEeCCC-CCCCCCCc----
Q psy3823         200 EG-GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNS-DTAPRPLT----  272 (365)
Q Consensus       200 ~~-~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~~~~W~~~~~-~~~~~~~~----  272 (365)
                      .. .+..+.|.|.          .+|.+....... .+..|+.+.|.|. +.+.|.+. +.|++++. ........    
T Consensus        90 ~~~~~~~~~l~V~----------~~p~~~~~~~~~-~~~~g~~~~l~C~~~~~~p~~~-i~W~~~~~~~l~~~~~~~~~~  157 (212)
T 1f97_A           90 QNYGEVSIHLTVL----------VPPSKPTISVPS-SVTIGNRAVLTCSEHDGSPPSE-YSWFKDGISMLTADAKKTRAF  157 (212)
T ss_dssp             SSEEEEEEEEEEE----------BCCCCCEEECCS-EEETTSCEEEEEECSCCBSCCE-EEEEETTEESBC-----CBSC
T ss_pred             CcccEEEEEEEEE----------cCCCCcccCCcc-ccCCCCeEEEEEEcccCcCCCE-EEEEeCCcccccccccccccc
Confidence            32 2356778887          666654333222 3789999999999 68899998 99999987 54332211    


Q ss_pred             --eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc--eecEEEEEEcC
Q psy3823         273 --SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ--RTPCTFHVVKA  319 (365)
Q Consensus       273 --~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~  319 (365)
                        ..+........|.|.++..+|+|.|+|.|.|..|..  +..+.|.|...
T Consensus       158 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~~  208 (212)
T 1f97_A          158 MNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL  208 (212)
T ss_dssp             SSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEESS
T ss_pred             cCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEEe
Confidence              111222333469999999999999999999999988  66677777643

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.88  E-value=1.2e-21  Score=166.41  Aligned_cols=182  Identities=21%  Similarity=0.289  Sum_probs=131.5

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCC---ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASA---GRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF  206 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~  206 (365)
                      ..+.+|+.+.|.|.+.+.|.+. +.|++++..+......   .......+|.|.+++..|+|.|+|.+.+..+... ..+
T Consensus        25 ~~v~~G~~v~L~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~-~~~  102 (241)
T 3grw_A           25 LAVPAANTVRFRCPAAGNPTPS-ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR-QTY  102 (241)
T ss_dssp             EEEETTSEEEEECCEECSSCCE-EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE-EEE
T ss_pred             eEEcCCCeEEEEEEecCCCCce-eEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceE-EEE
Confidence            4678999999999999988776 9999999988654332   1222356899999999999999999999877544 556


Q ss_pred             EEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEe----CCCCCCCCCCceeE-------
Q psy3823         207 DLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF----NNSDTAPRPLTSYS-------  275 (365)
Q Consensus       207 ~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~----~~~~~~~~~~~~~~-------  275 (365)
                      .+.|...      ....|.+.........+..|+.+.|.|.+.+.|.+. +.|++    ++............       
T Consensus       103 ~l~V~~~------~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~-v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~  175 (241)
T 3grw_A          103 TLDVLER------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKSWIS  175 (241)
T ss_dssp             EEEEECC------CCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCE-EEEEEECCSSSCSSCTTTCCCEEEEEEEEC
T ss_pred             EEEEecc------CCCCceeecCCCccceecCCCEEEEEEEEecCCCCE-EEEEEcccCCCcccCCCCceeeeeeeEeee
Confidence            7777610      001233333222333378899999999999999997 99999    66544332221111       


Q ss_pred             eeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCc
Q psy3823         276 IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       276 ~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  320 (365)
                      ......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..++
T Consensus       176 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p  220 (241)
T 3grw_A          176 ESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR  220 (241)
T ss_dssp             SBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----
T ss_pred             eecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCC
Confidence            111235679999999999999999999999999999999887554

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.88  E-value=8.9e-22  Score=163.37  Aligned_cols=177  Identities=12%  Similarity=0.122  Sum_probs=124.1

Q ss_pred             cceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCCceEEe----eceEEEeeecCCCCeEEEEEEEcCCCCCCcc
Q psy3823         130 SVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASAGRIIT----NQTLVLQSVTRHSGGLYACSAINSQGEGGST  204 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~  204 (365)
                      ..+.+|+.+.|.|.+.+ .|.+. ++|++||.++.......+...    ..+|.|.+++.+|+|.|+|.+.|  |... .
T Consensus        12 ~~v~eg~~v~l~c~~~~~~P~p~-i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~-~   87 (207)
T 3rbs_A           12 VEILEKGQVRFWMQAEKLSGNAK-VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKAT-N   87 (207)
T ss_dssp             EEECGGGCEEEEEECSCCCSCCE-EEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEE-E
T ss_pred             eEEEeCCeEEEEEEEecCCCCCE-EEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeE-E
Confidence            36789999999999975 56666 999999999976544333332    12699999999999999999999  4332 2


Q ss_pred             cEEEEEeeeee-c-----ccc-----cCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc
Q psy3823         205 PFDLNINKMVN-L-----IFN-----SIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT  272 (365)
Q Consensus       205 ~~~l~v~~~~~-~-----~~~-----~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~  272 (365)
                      ...+.+..... .     ...     ...+|.+.... . ..+.+|+.+.|.|.+.|. |.|. +.|+++|...... .+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~-~~v~~g~~v~l~C~v~g~~P~p~-i~W~k~g~~l~~~-~~  163 (207)
T 3rbs_A           88 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-S-WEVTGECNVLLKCKVANIKKETH-IVWYKDEREISVD-EK  163 (207)
T ss_dssp             EEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-E-EEEETTTEEEEEEEEESCCTTCE-EEEEETTEEECCC-CC
T ss_pred             EEEEEEEccchhhhcccccccccccccCCCCceEecC-C-cEEcCCCcEEEEEEEeCCCCCCE-EEEEECCEECCCC-Cc
Confidence            22222110000 0     000     00245554333 2 348899999999999998 8898 9999998754331 11


Q ss_pred             eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         273 SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       273 ~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                        +........|.|.+++.+|+|.|+|.|.|..|..+.++.|.+
T Consensus       164 --~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          164 --HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             --CCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             --eEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence              222333456999999999999999999999999988887754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.88  E-value=2.8e-23  Score=186.64  Aligned_cols=203  Identities=15%  Similarity=0.243  Sum_probs=148.1

Q ss_pred             CCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCe
Q psy3823          81 EYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGI  160 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~  160 (365)
                      +.|.|+|.+.+..    ..+.+.+         -.+|.+...+    ....+.+|+++.|.|.+.|.|.+. +.|++++.
T Consensus       136 ~~~~~~C~~~~~l----~~l~~~~---------c~~P~i~~~~----~~~~v~~G~~v~L~C~~~g~p~p~-i~W~~~~~  197 (347)
T 2ifg_A          136 PEQKLQCHGQGPL----AHMPNAS---------CGVPTLKVQV----PNASVDVGDDVLLRCQVEGRGLEQ-AGWILTEL  197 (347)
T ss_dssp             GGGCCCCSSSSCS----SCCCCTT---------CCCCEEEEEC----CSSCCBTTCCEEEEEEEECSSCCC-CCEEESCC
T ss_pred             cccCCCCCCChHH----hcCCccc---------CCCCceeccC----CceEEeCCCcEEEEEEEecCCCCE-EEEEcCCc
Confidence            5688999866511    1222211         2467776665    334788999999999999988887 99999886


Q ss_pred             EEeeCCCCceEEeeceEEEeeecCCCCe-EEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecC
Q psy3823         161 TISNNASAGRIITNQTLVLQSVTRHSGG-LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN  239 (365)
Q Consensus       161 ~l~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g  239 (365)
                      .+............++|.|.+++..|+| .|+|.+.|..|... ..+.|.|.          .+|.+     .......|
T Consensus       198 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~-~~~~l~V~----------~~P~i-----~~~~~~~g  261 (347)
T 2ifg_A          198 EQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAE-VSVQVNVS----------FPASV-----QLHTAVEM  261 (347)
T ss_dssp             CSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECC-EEECCCCB----------EEEEE-----EECCCEES
T ss_pred             eeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCCCEE-EEEEEEEc----------CCCee-----eeccCccC
Confidence            6543222223334678999999999999 99999999988664 56666776          56654     11125678


Q ss_pred             ceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE--ee-----CCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS--IQ-----DGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       240 ~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~--~~-----~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      +.+.|.|.+.|.|.|. +.|+++|..... ......  ..     ......|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus       262 ~~v~l~C~~~g~P~p~-i~W~~~g~~l~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~  339 (347)
T 2ifg_A          262 HHWCIPFSVDGQPAPS-LRWLFNGSVLNE-TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI  339 (347)
T ss_dssp             SSEEEEEEEEEESCCE-EEEEETTEECCC-CSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEEeeecCCCc-EEEEeCCEECCC-CcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEE
Confidence            9999999999999998 999998875442 222111  11     12255699999999999999999999999999888


Q ss_pred             EEEEEcC
Q psy3823         313 TFHVVKA  319 (365)
Q Consensus       313 ~l~v~~~  319 (365)
                      .|.|..+
T Consensus       340 ~l~V~~~  346 (347)
T 2ifg_A          340 MAAFMDN  346 (347)
T ss_dssp             EECSCCC
T ss_pred             EEEecCC
Confidence            8877644

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.88  E-value=8.4e-22  Score=159.27  Aligned_cols=160  Identities=18%  Similarity=0.272  Sum_probs=120.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      +....+.+|+.++|.|.+.+.|.+..+.|++++.. +...       +.   .|.|.+++.+|+|.|+|.+.+..+  ..
T Consensus        11 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~-~~~~-------~~---~L~i~~v~~~d~G~Y~C~~~~~~~--s~   77 (176)
T 1f2q_A           11 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSL-SEET-------NS---SLNIVNAKFEDSGEYKCQHQQVNE--SE   77 (176)
T ss_dssp             SSCSEEETTCCEEEECCTTCC----CCEEEETTEE-CSCC-------SS---EEEECSCCGGGCEEEEEECTTSSC--CC
T ss_pred             CCCcceecCCcEEEEEeCCCCCCcceEEEEECCeE-CCCC-------ce---EEEEeccceecCEEEEEEcCCccc--cc
Confidence            34456899999999999777777537999999987 5532       22   899999999999999999986443  46


Q ss_pred             cEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEE
Q psy3823          99 PCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLV  178 (365)
Q Consensus        99 ~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~  178 (365)
                      .+.|.|         ..++.+ +..    ....+.+|+.+.|.|.+.+.++...+.|+++|..+...      ..+..|.
T Consensus        78 ~~~l~V---------~~~~~~-~~~----~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------~~~~~L~  137 (176)
T 1f2q_A           78 PVYLEV---------FSDWLL-LQA----SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------YENHNIS  137 (176)
T ss_dssp             CEEEEE---------ECSSEE-EEE----SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC------CCSSEEE
T ss_pred             cEEEEE---------eCccee-ecC----CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee------cCCCeEE
Confidence            677887         434433 332    22467899999999999654444459999999988532      2347899


Q ss_pred             EeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         179 LQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       179 i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      |.+++.+|+|.|+|.+.|..+...+..+.|.|.
T Consensus       138 i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  170 (176)
T 1f2q_A          138 ITNATVEDSGTYYCTGKVWQLDYESEPLNITVI  170 (176)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ECCCCcccCEEEEEEEEeCCcceEecCEEEEEe
Confidence            999999999999999999766555577889988

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.88  E-value=3.8e-22  Score=164.47  Aligned_cols=190  Identities=10%  Similarity=0.175  Sum_probs=134.6

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEE-eCCCCC-cceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCT-VDANPQ-AQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~-~~~~p~-~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      +.|.+....+....+.+|+.+.|.|. ..+.|. + .++|++++.. +................|.|.+++.+|+|.|+|
T Consensus         6 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   83 (201)
T 3s97_C            6 YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDL-SYRWLLNEFP-VFITMDKRRFVSQTNGNLYIANVEASDKGNYSC   83 (201)
T ss_dssp             EECCCCSSCCCCEEEETTCCEEECCCCCSEESSCC-EEEEEESSTT-CBCCCSSSEEECTTTCCEEESSCCGGGCEEEEE
T ss_pred             cCCccCcCCCceEEEECCCCEEEeccccccCCCce-EEEEEECCce-eeeeeCCCeEEEcCCCeEEECcCCcccCeEEEE
Confidence            33444445556788999999999999 888888 8 9999999987 542221111111111379999999999999999


Q ss_pred             EEEeCCCCCc---ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEee
Q psy3823          88 WARNEQGNQR---TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN  164 (365)
Q Consensus        88 ~a~~~~~~~~---~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~  164 (365)
                      .+.+..+...   ..+.+.+.....  ....+|.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~----~~~~~~~g~~~~l~C~~~g~p~p~-v~W~~~~~~~~~  156 (201)
T 3s97_C           84 FVSSPSITKSVFSKFIPLIPIPERT--TKPYPADIVVQF----KDVYALMGQNVTLECFALGNPVPD-IRWRKVLEPMPS  156 (201)
T ss_dssp             EEEEGGGTEEEECCCEEEEEECCSS--CCCEEEEEEEEC----CCEEEETTCCEEEEEEEEEESCCE-EEEEETTBCCCT
T ss_pred             EEEecCCCcchhhcccceeeccccc--cCCCCCceEecC----CceEEecCCcEEEEEEccCCCCCc-eEEEeCCCcCCC
Confidence            9998665443   344544422111  002345555544    234688999999999999998887 999999986653


Q ss_pred             CCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         165 NASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       165 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      .  ......+..|.|.++..+|+|.|+|.+.|..|... ..+.|.|.
T Consensus       157 ~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~  200 (201)
T 3s97_C          157 T--AEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDK-HQARIYVQ  200 (201)
T ss_dssp             T--CEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             c--eeecCCCCEEEEccCChhhCEEEEEEEEecCCcee-eeEEEEEe
Confidence            2  22333467899999999999999999999988664 56666664

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.88  E-value=1.3e-21  Score=162.67  Aligned_cols=178  Identities=20%  Similarity=0.342  Sum_probs=131.2

Q ss_pred             EeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCC------------CCceeEecCCeEEEEEEccCCCCC
Q psy3823          14 CKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPR------------PLTSYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        14 ~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~------------~~~~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      .....+..+.+.+|+.+.|.|.+.+.|.+ .+.|++++.. +..            ... .....   ..|.|.+++.+|
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~r-~~~~~---~~L~i~~v~~~D   76 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSGFSSP-RVEWKFVQGS-TTALVCYNSQITAPYADR-VTFSS---SGITFSSVTRKD   76 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSSE-EEEEEEEETT-EEEEEEETTEECGGGTTT-EEEET---TEEEESCCCGGG
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCCCCCc-EEEEEECCCc-eeeEEecCCcccccccCc-EEeec---eeEEEcccCccc
Confidence            34455677888999999999997788888 9999998865 310            111 11122   389999999999


Q ss_pred             CeEEEEEEEeCCCCC--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEE-EEecCCCCeeEEEeC
Q psy3823          82 YGTLLCWARNEQGNQ--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH-IQANPPYKKLIWTHN  158 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~-~~~~p~~~~i~W~~~  158 (365)
                      +|.|+|.+.+..+..  ...+.|.|         ..+|.+...+    ....+.+|+.+.|.|. +.+.|.+. +.|+++
T Consensus        77 ~G~Y~C~~~~~~g~~~~~~~~~l~V---------~~~p~~~~~~----~~~~~~~g~~~~l~C~~~~~~p~~~-i~W~~~  142 (212)
T 1f97_A           77 NGEYTCMVSEEGGQNYGEVSIHLTV---------LVPPSKPTIS----VPSSVTIGNRAVLTCSEHDGSPPSE-YSWFKD  142 (212)
T ss_dssp             CEEEEEEEEETTSSSEEEEEEEEEE---------EBCCCCCEEE----CCSEEETTSCEEEEEECSCCBSCCE-EEEEET
T ss_pred             CeEEEEEEEccCCCcccEEEEEEEE---------EcCCCCcccC----CccccCCCCeEEEEEEcccCcCCCE-EEEEeC
Confidence            999999999987633  36777887         4455443332    2235789999999999 67888876 999999


Q ss_pred             Ce-EEeeCCCC-------ceEE--eeceEEEeeecCCCCeEEEEEEEcCCCCC-CcccEEEEEe
Q psy3823         159 GI-TISNNASA-------GRII--TNQTLVLQSVTRHSGGLYACSAINSQGEG-GSTPFDLNIN  211 (365)
Q Consensus       159 ~~-~l~~~~~~-------~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~s~~~~l~v~  211 (365)
                      +. .+......       ....  ....|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|.
T Consensus       143 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          143 GISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             TEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             CcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence            98 77543221       1111  25689999999999999999999999977 4567777776

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.5e-21  Score=163.51  Aligned_cols=179  Identities=13%  Similarity=0.216  Sum_probs=131.4

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI  195 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  195 (365)
                      .+.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|++++..+...       ....|.|.+++..|+|.|+|.+.
T Consensus        18 ~~~i~~~p----~~~~v~~G~~v~L~C~~~~~p~~~-v~W~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~   85 (218)
T 3k0w_A           18 GSKITVNP----ESKAVLAGQFVKLCCRATGHPFVQ-YQWFKMNKEIPNG-------NTSELIFNAVHVKDAGFYVCRVN   85 (218)
T ss_dssp             -CCEEECC----CCEEEETTSBEEEECEETTTTSSE-EEEEETTEECTTC-------CSSEEEETTCCGGGCEEEEEEEE
T ss_pred             CCEEEECC----CCeEEeCCCcEEEEeeecCCCCCE-EEEEECCEECCCC-------CCCEEEEccCChhhCeEeEEEEE
Confidence            44444444    335688999999999998887776 9999999887542       24689999999999999999999


Q ss_pred             cCCCCCCcccEEEEEeeeeecccc-----cCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC
Q psy3823         196 NSQGEGGSTPFDLNINKMVNLIFN-----SIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP  270 (365)
Q Consensus       196 ~~~~~~~s~~~~l~v~~~~~~~~~-----~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~  270 (365)
                      +..+...+..+.|.|.........     ...+|.+...+.. ..+..|+.+.|.|.+.+.|.+. +.|++++...... 
T Consensus        86 n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~G~~v~L~C~~~g~p~~~-v~W~~~~~~~~~~-  162 (218)
T 3k0w_A           86 NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS-QKLMPGSTLVLQCVAVGSPIPH-YQWFKNELPLTHE-  162 (218)
T ss_dssp             CTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCC-EEECTTCCEEEECEEEBSSCCE-EEEEETTEECTTC-
T ss_pred             cCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCc-eeecCCCcEEEEEEecccCCCe-EEEEECCEECCCC-
Confidence            988765556778888721100000     0011344333333 3378999999999999999998 9999988643221 


Q ss_pred             CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc-ceecEEEEEEc
Q psy3823         271 LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS-QRTPCTFHVVK  318 (365)
Q Consensus       271 ~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~  318 (365)
                               ....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus       163 ---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          163 ---------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             ---------CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             ---------CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence                     2235999999999999999999999887 56677777654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.88  E-value=6.6e-22  Score=165.34  Aligned_cols=186  Identities=17%  Similarity=0.302  Sum_probs=133.6

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC--CceEEeeceE----EEeeecCCCC
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS--AGRIITNQTL----VLQSVTRHSG  187 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~--~~~~~~~~~l----~i~~~~~~d~  187 (365)
                      ..+|.+...+    ....+.+|+.+.|.|.+.+.|.+. +.|+++|..+.....  ......++.+    .|.+++..|+
T Consensus         7 ~~~P~i~~~p----~~~~v~~G~~v~L~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~   81 (217)
T 2vr9_A            7 YQSPRIIEHP----TDLVVKKNEPATLNCKVEGKPEPT-IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDG   81 (217)
T ss_dssp             CCCCEEEECC----CCEEECTTSCEEECCEEECSSCCE-EEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCC
T ss_pred             cCCCEEecCC----CceEEeCCCcEEEEEEcCCCCCCe-EEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccC
Confidence            4577766654    335788999999999999988776 999999998865432  1222223333    5788899999


Q ss_pred             eEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEE-eeeCCCceeEEEeCCCCC
Q psy3823         188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSDT  266 (365)
Q Consensus       188 G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~W~~~~~~~  266 (365)
                      |.|+|.+.|..|...+..+.|.|..         .+|.+...+.. ..+..|+.+.|.|.+ .+.|.+. +.|++++...
T Consensus        82 G~Y~C~~~n~~g~~~~~~~~l~v~~---------~~~~~~~~~~~-~~~~~g~~v~l~C~~~~g~p~~~-v~W~~~g~~~  150 (217)
T 2vr9_A           82 GEYWCVAKNRVGQAVSRHASLQIAV---------LRDDFRVEPKD-TRVAKGETALLECGPPKGIPEPT-LIWIKDGVPL  150 (217)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECE---------ECCSCSBCCCC-EEECTTSCEEECCBCCCEESCCE-EEEEETTEEE
T ss_pred             ceEEEEEecCCCccccccceEEEEE---------eCCCcEECCCc-cEEcCCCeEEEEEECCCCCCCCe-EEEEECCcCC
Confidence            9999999998876544566677661         13333333323 337899999999999 8999998 9999988643


Q ss_pred             CCC-------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         267 APR-------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       267 ~~~-------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      ...       ........++   .|.|.+++.+|+|.|+|.|.|..|....+..+.+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          151 DDLKAMSFGASSRVRIVDGG---NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             CCCCCC---CCCSEEEETTT---EEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CcccccccccCCcEEecCCC---cEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence            311       1112222222   599999999999999999999999987776665543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.88  E-value=6.5e-22  Score=166.78  Aligned_cols=183  Identities=19%  Similarity=0.312  Sum_probs=132.9

Q ss_pred             ccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc---eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCccc
Q psy3823         129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG---RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTP  205 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~  205 (365)
                      ...+.+|+++.|.|.+.+.|.+. +.|++++..+.......   ......+|.|.+++..|+|.|+|.+.|..+... ..
T Consensus        28 ~~~v~~G~~v~L~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~-~~  105 (231)
T 3ojm_B           28 LHAVPAANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN-HT  105 (231)
T ss_dssp             CEEEETTSCEEEECCEEEESCCE-EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE-EE
T ss_pred             eEEEccCCCEEEEEecccCCCCe-EEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCccc-cc
Confidence            34678999999999999988877 99999999886543321   222355899999999999999999999877543 56


Q ss_pred             EEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEe----CCCCCCCCCCcee-E-e---
Q psy3823         206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF----NNSDTAPRPLTSY-S-I---  276 (365)
Q Consensus       206 ~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~----~~~~~~~~~~~~~-~-~---  276 (365)
                      +.|.|....      ..+|.+.........+..|+.+.|.|.+.+.|.+. +.|++    +|........... . .   
T Consensus       106 ~~l~V~~~~------~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~g~~~~~~~~~~~~~~~~~~  178 (231)
T 3ojm_B          106 YHLDVVERS------RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH-IQWIKHVEKNGSKYGPDGLPYLKVLKHSG  178 (231)
T ss_dssp             EEEEEECCC------CCCCEECTTCSCCEEEETTCCEEEECCEECSSCCE-EEEEEECCBTTBSBCTTSCBCEEEEEECS
T ss_pred             EEEEEEcCC------CCCCceeeccCCceEEEeCCcEEEEEEEecCCCCE-EEEEECCCCCCccccCCCcceEeEecccc
Confidence            677776100      01233332223334488999999999999999997 99999    5543322221111 1 0   


Q ss_pred             -eCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCc
Q psy3823         277 -QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       277 -~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  320 (365)
                       .....+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..++
T Consensus       179 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  223 (231)
T 3ojm_B          179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ  223 (231)
T ss_dssp             TTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             cccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCC
Confidence             11123469999999999999999999999999999999987553

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.88  E-value=1.7e-21  Score=157.38  Aligned_cols=167  Identities=16%  Similarity=0.221  Sum_probs=127.2

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+|.+.+.+..    ..+.+|+.++|.|.+.+.|.+..+.|++++..+..        .+..|.|.+++.+|+|.|+|.
T Consensus         5 ~~~p~i~~~p~~----~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~   72 (175)
T 1fnl_A            5 LPKAVVFLEPQW----YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------QASSYFIDAATVNDSGEYRCQ   72 (175)
T ss_dssp             CCCCEEEEESCC----SEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------SCSEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEcCCc----eeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC--------CceEEEEeCCCcccCEEEEEE
Confidence            457777776632    46889999999999998877666889999988863        346899999999999999999


Q ss_pred             EEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeCCCCCCCCCCc
Q psy3823         194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSDTAPRPLT  272 (365)
Q Consensus       194 ~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~~~~  272 (365)
                      +.|..+   +..+.|.|.          .++.+.....  ..+..|+.+.|.|.+.+.+++ . +.|+++|....     
T Consensus        73 ~~n~~~---s~~~~l~V~----------~~~~~~~~~~--~~~~~g~~~~l~C~~~~~~~~~~-~~W~k~g~~~~-----  131 (175)
T 1fnl_A           73 TNLSTL---SDPVQLEVH----------IGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHK-VTYLQNGKDRK-----  131 (175)
T ss_dssp             CSSSCC---CCCEEEEEE----------CSSEEEECSC--SEEETTCCEEEEEEECTTCCCEE-EEEEETTEEEE-----
T ss_pred             eeCCcc---cccEEEEEe----------CCCceeeCCC--ceecCCCCEEEEEEcCCCCCceE-EEEEECCeEcc-----
Confidence            987543   356788887          5554443322  227899999999999887665 6 99999876321     


Q ss_pred             eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc-ceecEEEEEE
Q psy3823         273 SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS-QRTPCTFHVV  317 (365)
Q Consensus       273 ~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~  317 (365)
                        ..  .....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus       132 --~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          132 --YF--HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             --EE--EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             --CC--CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence              11  11235999999999999999999997664 5566777765

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.87  E-value=1.2e-20  Score=164.92  Aligned_cols=204  Identities=15%  Similarity=0.237  Sum_probs=142.7

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe-CCeEEeeCCCCceEE----eeceEEEeeecCCCCeEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGRII----TNQTLVLQSVTRHSGGLY  190 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~-~~~~l~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y  190 (365)
                      +|.+.+.+    .+..+.+|+.+.|.|.+.+.++...+.|++ +|..+..........    ....|.|.+++.+|+|.|
T Consensus         2 ~~~v~~~p----~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   77 (291)
T 1qz1_A            2 VLQVDIVP----SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIY   77 (291)
T ss_dssp             CCCEEEES----SSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcceEecC----CCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEE
Confidence            34555555    334688999999999999877544599999 787775433222221    246899999999999999


Q ss_pred             EEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC
Q psy3823         191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP  270 (365)
Q Consensus       191 ~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~  270 (365)
                      +|.+.|..|...+..+.|.|.          .+|.+...+... .+..|+.+.|.|.+.+.|.+. +.|++++.......
T Consensus        78 ~C~~~n~~g~~~~~~~~l~v~----------~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~  145 (291)
T 1qz1_A           78 KCVVTAEDGTQSEATVNVKIF----------QKLMFKNAPTPQ-EFKEGEDAVIVCDVVSSLPPT-IIWKHKGRDVILKK  145 (291)
T ss_dssp             EEEEECTTSCEEEEEEEEEEE----------CCSEEEECCSSE-EEETTSCEEECCEEECSSCCE-EEEEETTSCSSTTC
T ss_pred             EEEEEcCCCCeeEEEEEEEee----------ccccccCCCCcc-cccCCCeEEEEEEeccCCCCE-EEEEECCEEcccCC
Confidence            999999987655567788887          777766544333 388999999999999999998 99999987543322


Q ss_pred             C-ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc--eecEEEEEEcCcc-------ccccCccccEEEEEEEE
Q psy3823         271 L-TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ--RTPCTFHVVKAGE-------CEHPVAVSHRYVAKLYA  338 (365)
Q Consensus       271 ~-~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~~~-------c~~~l~~~~~~~~~~~~  338 (365)
                      . ......++   .|.|.+++.+|+|.|+|.|.|..+..  ...+.+.|..++.       -...+..|...++.|.+
T Consensus       146 ~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~  220 (291)
T 1qz1_A          146 DVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA  220 (291)
T ss_dssp             CTTEEECTTS---CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEE
T ss_pred             CceEEEccCC---cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEE
Confidence            2 22222232   49999999999999999999977543  2444555543322       12234555555555543

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.87  E-value=1.2e-21  Score=162.55  Aligned_cols=173  Identities=17%  Similarity=0.211  Sum_probs=127.7

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC-------------------CceeEecCCeEEEEEEccCCCC
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP-------------------LTSYSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-------------------~~~~~~~~~~~~~l~i~~~~~~   80 (365)
                      ....+.+|+.++|.|...+.|.+ .+.|++++.. ....                   .......++   .|.|.+++.+
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~   81 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHNLPLALG-AFAWYKGNTT-AIDKEIARFVPNSNMNFTGQAYSGREIIYSNG---SLLFQMITMK   81 (208)
T ss_dssp             ESSEEETTCCEEEEEECCCSSCS-EEEEEESSCC-CGGGEEEEEEGGGTEEEECTTCCSSEEECTTS---CEEECSCCGG
T ss_pred             ccceeecCCcEEEEEeCCCCCce-EEEeccCCCC-CccceEEEEecCCCccccCccccceeEEecCC---eEEEcccccc
Confidence            34567899999999997777888 9999998653 2211                   011111223   6999999999


Q ss_pred             CCeEEEEEEEeCCC-CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCC
Q psy3823          81 EYGTLLCWARNEQG-NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNG  159 (365)
Q Consensus        81 d~G~Y~C~a~~~~~-~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~  159 (365)
                      |+|.|+|.+.+..+ .....+.|.|...      ...|.+....      ..+.+|+.+.|.|.+.+.| +. +.|++++
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~------~~~p~i~~~~------~~~~~g~~v~l~C~~~~~p-p~-i~W~~~g  147 (208)
T 3r4d_A           82 DMGVYTLDMTDENYRRTQATVRFHVHQP------VTQPFLQVTN------TTVKELDSVTLTCLSNDIG-AN-IQWLFNS  147 (208)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEEECC------CCCCEEEESC------SSCCTTCCEEEEEECSCTT-CE-EEEEETT
T ss_pred             CCeEEEEEEEcccCceeEEEEEEEeccC------CCCCEEecCC------ceEeeCCCEEEEEECCCCC-Cc-eEEEECC
Confidence            99999999998753 3347777887311      2234443321      1278899999999998865 54 9999999


Q ss_pred             eEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         160 ITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       160 ~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      ..+...........+.+|.|.++...|+|.|+|.|.|..|...+..+.|.|.
T Consensus       148 ~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          148 QSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             EECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             EeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            9887543322222357899999999999999999999999988888999888

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.87  E-value=7.5e-21  Score=157.22  Aligned_cols=171  Identities=17%  Similarity=0.238  Sum_probs=122.8

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEE
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCT  101 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~  101 (365)
                      ..+.+|+.++|.|.+.+.|.+ .+.|++.....+.  .  .....+....|.|.+++.+|+|.|+|.|.|..+.....+.
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p-~i~W~~~~~~~~~--~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~   85 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLN--G--KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSC-EEEEEETTCCCCS--S--EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCC-eEEEECCCCCCcc--c--eEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEE
Confidence            445699999999998889999 8999984322021  1  1112233447999999999999999999998776667888


Q ss_pred             EEEEeccccCCCCCCCe-EEEEcCCccCccceecCCcEEEEEEEEecCCC--CeeEEEeCCeEEeeCCCCc------eEE
Q psy3823         102 FHVVKAGECEHPVDKPS-VQIKLGRNLNASVLNEGVDIYFDCHIQANPPY--KKLIWTHNGITISNNASAG------RII  172 (365)
Q Consensus       102 l~V~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~--~~i~W~~~~~~l~~~~~~~------~~~  172 (365)
                      |.|         ..+|. +.+.+.     ..+.+|+.++|.|.+.+.+++  ..+.|++++..+.......      ...
T Consensus        86 l~V---------~~~p~~~~~~~~-----~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~  151 (202)
T 1vca_A           86 VEI---------YSFPKDPEIHLS-----GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLET  151 (202)
T ss_dssp             EEE---------EBCCSCCEEEES-----SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEE
T ss_pred             EEE---------EeCCCCCEeCCc-----eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceE
Confidence            888         43442 333332     357899999999999986443  2489999999885422111      122


Q ss_pred             eeceEEEeeecCCCCeEEEEEEEcCCCCC------CcccEEEEEe
Q psy3823         173 TNQTLVLQSVTRHSGGLYACSAINSQGEG------GSTPFDLNIN  211 (365)
Q Consensus       173 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~------~s~~~~l~v~  211 (365)
                      ....|.|.....+|+|.|+|+|.|..+..      .+..+.|.|.
T Consensus       152 ~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~  196 (202)
T 1vca_A          152 KSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY  196 (202)
T ss_dssp             EEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEE
T ss_pred             EEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEe
Confidence            24567788888899999999999987753      2356778888

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.87  E-value=8.2e-22  Score=167.46  Aligned_cols=190  Identities=19%  Similarity=0.316  Sum_probs=136.0

Q ss_pred             cCCeEeeC---CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeEE
Q psy3823          10 DEPVCKQS---QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        10 ~~p~~~~~---~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      .+|.+...   .+..+.+.+|+.+.|.|.+.+.|.+ .+.|++++.. +...... ..........|.|.+++.+|+|.|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y   87 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP-SISWLKNGRE-FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNY   87 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCC-EEEEEETTEE-CCGGGSTTCCEEEGGGTEEEECSCCGGGCEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCc-eeEEEECCcc-cCCCCcccceeeeccceEEEEEeCCcccCEEE
Confidence            35655432   2457889999999999998788998 9999999987 5433221 111111222799999999999999


Q ss_pred             EEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe----CCeE
Q psy3823          86 LCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH----NGIT  161 (365)
Q Consensus        86 ~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~----~~~~  161 (365)
                      +|.+.+..+.....+.|.|...     +..+|.+.....   ....+.+|+.+.|.|.+.+.|.+. +.|++    ++..
T Consensus        88 ~C~~~~~~~~~~~~~~l~V~~~-----~~~~~~~~~~~~---~~~~~~~g~~v~L~C~~~~~p~p~-v~W~~~~~~~g~~  158 (241)
T 3grw_A           88 TCVVENKFGSIRQTYTLDVLER-----SPHRPILQAGLP---ANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSK  158 (241)
T ss_dssp             EEEEEETTEEEEEEEEEEEECC-----CCCCCEEEECTT---CSEECCTTCCEEEEEEEECSSCCE-EEEEEECCSSSCS
T ss_pred             EEEEeecCCceEEEEEEEEecc-----CCCCceeecCCC---ccceecCCCEEEEEEEEecCCCCE-EEEEEcccCCCcc
Confidence            9999998887777788887321     012333333222   234677899999999999988886 99999    7776


Q ss_pred             EeeCCCCceE----------EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         162 ISNNASAGRI----------ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       162 l~~~~~~~~~----------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      +.........          .....|.|.++...|+|.|+|.+.|..|... ..+.|.|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~  217 (241)
T 3grw_A          159 VGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE-KAFWLSVH  217 (241)
T ss_dssp             SCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEE-EEEEEEC-
T ss_pred             cCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEE-EEEEEEec
Confidence            6543332211          1245799999999999999999999998765 67788887

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.87  E-value=1.2e-21  Score=163.02  Aligned_cols=186  Identities=17%  Similarity=0.308  Sum_probs=131.6

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC----CceEEeece-----EEEeeecCC
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS----AGRIITNQT-----LVLQSVTRH  185 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~----~~~~~~~~~-----l~i~~~~~~  185 (365)
                      .+|.+...+    ....+.+|+++.|.|.+.+.|.+. +.|++++..+.....    ......++.     |.|.+++..
T Consensus         8 ~pp~i~~~p----~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   82 (212)
T 2v9r_A            8 FPPRIVEHP----SDLIVSKGEPATLNCKAEGRPTPT-IEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP   82 (212)
T ss_dssp             EEEEEEECC----CCEEECTTCCEEECCEEEEESCCE-EEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCC
T ss_pred             CCcceecCC----CceEEeCCCcEEEEEEcCCCCCCE-EEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcc
Confidence            356655544    335688999999999999888876 999999998864332    112222333     344566899


Q ss_pred             CCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEE-eeeCCCceeEEEeCCC
Q psy3823         186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNS  264 (365)
Q Consensus       186 d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~W~~~~~  264 (365)
                      |+|.|+|.+.|..|...+..+.|.|..         .++.+...... ..+..|+.+.|.|.+ .+.|.+. +.|++++.
T Consensus        83 d~G~Y~C~~~n~~g~~~~~~~~l~V~~---------~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~-v~W~~~~~  151 (212)
T 2v9r_A           83 DEGVYVCVARNYLGEAVSHDASLEVAI---------LRDDFRQNPSD-VMVAVGEPAVMECQPPRGHPEPT-ISWKKDGS  151 (212)
T ss_dssp             SCEEEEEEEEETTEEEECCCEEEEECE---------ECSSCSBCCCC-EEEETTSCEEEECBCCCEESCCE-EEEEETTE
T ss_pred             cCeEEEEEEECCCCceeecceEEEEEe---------ccccceeCCCc-eEecCCCcEEEEEecCCCCCCCE-EEEEECCc
Confidence            999999999998876544567777762         12223222222 338899999999999 8899998 99999887


Q ss_pred             CCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcccee-cEEEEEEcCc
Q psy3823         265 DTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT-PCTFHVVKAG  320 (365)
Q Consensus       265 ~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~  320 (365)
                      .......... ..++   .|.|.++..+|+|.|+|.|.|..|.... .+.|.|..++
T Consensus       152 ~l~~~~~~~~-~~~~---~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P  204 (212)
T 2v9r_A          152 PLDDKDERIT-IRGG---KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP  204 (212)
T ss_dssp             EECTTSTTEE-EETT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             cCCCCcceEE-ccCC---eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCc
Confidence            5433222222 2222   5999999999999999999999998654 4788887553

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.87  E-value=2e-21  Score=160.14  Aligned_cols=186  Identities=17%  Similarity=0.238  Sum_probs=125.6

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCC-ceEEeeceEEEeeecCCCCeEEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASA-GRIITNQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C  192 (365)
                      +.+|.+...+.     ..+.+|++++|.|.+.+.|. . +.|+++|..+...... ........|.|.+++..|+|.|+|
T Consensus         3 ~~~P~i~~~p~-----~~v~~G~~v~L~C~~~~~~~-~-~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   75 (198)
T 1ugn_A            3 LPKPTLWAEPG-----SVITQGSPVTLRCQGGQETQ-E-YRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRC   75 (198)
T ss_dssp             CCCCEEEEESC-----SEEETTCCEEEEEECCTTCC-C-EEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEE
T ss_pred             CCCCeEeccCC-----CcccCCCcEEEEEEecCCCc-E-EEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEE
Confidence            45787776653     26889999999999988665 4 9999999876421111 112235789999999999999999


Q ss_pred             EEEcCC-C-CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC
Q psy3823         193 SAINSQ-G-EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP  270 (365)
Q Consensus       193 ~~~~~~-~-~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~  270 (365)
                      .+.|.. + ...+..+.|.|..       ....|.+...+.  ..+.+|+.++|.|.+.+. .+. +.|+++|.......
T Consensus        76 ~a~n~~~g~~~~s~~~~l~V~~-------~~~~p~i~~~~~--~~v~~G~~v~L~C~~~~~-~~~-v~W~k~g~~~~~~~  144 (198)
T 1ugn_A           76 YYGSDTAGRSESSDPLELVVTG-------AYIKPTLSAQPS--PVVNSGGNVTLQCDSQVA-FDG-FILCKEGEDEHPQC  144 (198)
T ss_dssp             EEEETTTEECCCCCCEEEEEEC-------SSCCCEEEEESC--SEEETTCCEEEEEECSSC-CSE-EEEEEC------CE
T ss_pred             EEECCCCCcccCCccEEEEEcc-------cccCCccccCCc--cccCCCCcEEEEEecCCC-CcE-EEEEECCCccCCcc
Confidence            999987 5 2334678888871       001455443321  237899999999999887 666 99999987432211


Q ss_pred             CceeEe-eCCCEEEEEEcCCCcccCeEEEEEEEcCCcc-----ceecEEEEEE
Q psy3823         271 LTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGS-----QRTPCTFHVV  317 (365)
Q Consensus       271 ~~~~~~-~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~-----~~~~~~l~v~  317 (365)
                      ...... ..+....|.|.+++.+|+|.|+|.|.|..+.     .+..+.|.|.
T Consensus       145 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          145 LNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             ccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            111111 1224567999999999999999999998763     2455566553

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.87  E-value=7.7e-22  Score=162.40  Aligned_cols=175  Identities=15%  Similarity=0.219  Sum_probs=114.2

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC-CceEEeeceEEEeeecCCCCeEEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS-AGRIITNQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C  192 (365)
                      ..+|.+...+.     ..+.+|++++|.|.+.+.+.  .+.|++++..+..... .........|.|.+++..|+|.|+|
T Consensus         3 ~~~P~i~~~p~-----~~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   75 (196)
T 2d3v_A            3 LSKATLWAEPG-----SVISRGNSVTIRCQGTLEAQ--EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRC   75 (196)
T ss_dssp             CCBCEEEEESC-----SEEETTCCEEEEEECCTTCC--EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCEEEeCCC-----CcccCCCeEEEEEeCCCCCc--EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEE
Confidence            45777777653     26889999999999887654  5999999876642110 0011235689999999999999999


Q ss_pred             EEEcCCCCC-CcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC
Q psy3823         193 SAINSQGEG-GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL  271 (365)
Q Consensus       193 ~~~~~~~~~-~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~  271 (365)
                      .+.|..+.. .+..+.|.|...       ..+|.+...+.  ..+.+|+.++|.|.+.+.| +. +.|+++|........
T Consensus        76 ~a~n~~g~~~~s~~~~l~V~~~-------~~~p~i~~~~~--~~v~~G~~v~L~C~~~~~p-~~-~~W~k~g~~~~~~~~  144 (196)
T 2d3v_A           76 YYYSPAGWSEPSDPLELVVTGF-------YNKPTLSALPS--PVVTSGENVTLQCGSRLRF-DR-FILTEEGDHKLSWTL  144 (196)
T ss_dssp             EEEETTEECBCCCCEEEEEECS-------SCCCEEEC-------------CEEEEEESSCC-SE-EEEEEC---CCEEEE
T ss_pred             EEeCCCCcCCcCccEEEEecCC-------CCCCeEEccCC--ccccCCCcEEEEEEcCCCC-CE-EEEEccCCccccccc
Confidence            999887643 346678888710       01455543322  2378999999999999888 77 999999864321111


Q ss_pred             ceeEee-CCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         272 TSYSIQ-DGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       272 ~~~~~~-~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      ...... ......|.|.+++.+|+|.|+|.|.|..+
T Consensus       145 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          145 DSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             ECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             ccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            111111 22346799999999999999999999875

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.87  E-value=3.3e-21  Score=168.52  Aligned_cols=190  Identities=16%  Similarity=0.177  Sum_probs=136.7

Q ss_pred             EeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCC-cceEEEE-eCCCcCCCCCCceeEecCCeEEEEEEccCCCCCC
Q psy3823           5 IFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ-AQYFTWA-FNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus         5 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~-~~~v~W~-~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      .+.+.++|... .......+.+|+.+.|.|.+.+ |. + .++|+ +++.. +..........+.   .|.|.+++.+|.
T Consensus        85 ~l~V~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~-p~~~-~v~W~~~~g~~-l~~~~~~~~~~~~---~L~i~~v~~~d~  157 (290)
T 2o26_X           85 YVFVRDPAKLF-LVGLPLFGKEDSDALVRCPLTD-PQVS-QYSLIECDGKS-LPTDLTFVPNPKA---GITIKNVKRAYH  157 (290)
T ss_dssp             EEEEECSSCCB-CCCCCEEEETTSCEEECCCBSC-CSCE-EEEEEETTSCC-CCTTCEEEEETTT---EEEEESCCGGGT
T ss_pred             EEEEeCCCccc-ccccceEEecCCeEEEeCcCCC-CCCc-eEEEEeCCCcC-CCCCCceeeCCCC---CEEEecccHHHC
Confidence            34455555444 3445566789999999999774 77 7 99995 67766 6654443333444   799999999999


Q ss_pred             e-EEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCe
Q psy3823          83 G-TLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGI  160 (365)
Q Consensus        83 G-~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~  160 (365)
                      | .|+|.|.|..+... ..+.|.|...     +..+|.+...+.    ...+.+|+.+.|.|.+.+.|.+..+.|++++.
T Consensus       158 G~~Y~C~a~n~~~~~~s~~~~l~V~~~-----~~~~P~i~~~~~----~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~  228 (290)
T 2o26_X          158 RLCVRCAAQRDGTWLHSDKFTLKVREA-----IKAIPVVSVPET----SHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNP  228 (290)
T ss_dssp             TCEEEEEEEETTEEEECCCEEEEEECC-----CCSCCEEECSCS----BCCCCTTCCEEEEEEEEESSTTCEEEEEEESS
T ss_pred             CCEEEEEEEECCceEEeEEEEEEEEeC-----CCCCCccccCCC----cceEecCCcEEEEEEEecCCcceeEEEecCCC
Confidence            9 99999999855433 5688887310     125777655442    34688999999999999998886799999887


Q ss_pred             EE----eeCCCCc-----eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         161 TI----SNNASAG-----RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       161 ~l----~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      .+    .......     .......|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~  287 (290)
T 2o26_X          229 QPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSAN-VTTTLKVV  287 (290)
T ss_dssp             SEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEE-EEEEECC-
T ss_pred             CCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEE-EEEEEEEE
Confidence            63    2211111     223367899999999999999999999998764 56667665

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.87  E-value=2.5e-21  Score=171.25  Aligned_cols=187  Identities=15%  Similarity=0.235  Sum_probs=138.3

Q ss_pred             EeecccCCeEeeCCceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCC---eEEEEEEccCCCC
Q psy3823           5 IFNSTDEPVCKQSQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSEL   80 (365)
Q Consensus         5 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~   80 (365)
                      .+.+...|..... .....+..|+.+.|.|. ..+.|.+ .+.|++++.. +..........++   ..+.|.|.+...+
T Consensus       111 ~l~v~~~P~~~~~-~~~~~~~~~~~~~~~C~~~~~~P~~-~i~W~~~~~~-~~~~~~~~~~~~~~~~~~s~l~i~~~~~~  187 (313)
T 4fqp_A          111 WLRVLAKPQNTAE-VQKVQLTGEPVPMARCVSTGGRPPA-QITWHSDLGG-MPNTSQVPGFLSGTVTVTSLWILVPSSQV  187 (313)
T ss_dssp             EECCBBCCEEEEE-ECCBCCCSSCEEEEEEEEEEEBSCC-EEEEEETTCC-EEEEEEEECSSTTCEEEEEEEEECCCGGG
T ss_pred             eeeeccCCcceec-ccceEeecCceEEEEEEccCccCCc-EEEeecCCcc-ccccceeeeecccccccceeeeecccccc
Confidence            3445555544332 22234567899999998 5678999 9999999887 5433222222222   2346899999999


Q ss_pred             CCeEEEEEEEeCCCCCc--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeC
Q psy3823          81 EYGTLLCWARNEQGNQR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHN  158 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~  158 (365)
                      |+|.|+|.|.|..+...  ..+.|.|         ..+|.+.+.+..   ...+.+|+.++|.|.+.|+|.|..|.|+++
T Consensus       188 d~g~Y~C~a~n~~~~~~~~~~~~l~V---------~~~P~v~~~~~~---~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~  255 (313)
T 4fqp_A          188 DGKNVTCKVEHESFEKPQLLTVNLTV---------YYPPEVSISGYD---NNWYLGQNEATLTCDARSNPEPTGYNWSTT  255 (313)
T ss_dssp             TTCEEEEEEECTTSSSCEEEEEECCB---------CEEEEEEEECCC---SCEETTCCCEEEEEEEEEESCCCEEEEEET
T ss_pred             cCeeEEEEEEccCcCccceeeeeccc---------ccCCcccccccc---ceeecCCCeEEEEEEecCCCCCcEEEEEEC
Confidence            99999999999877665  4455666         567877766543   235667899999999999998866999999


Q ss_pred             CeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         159 GITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       159 ~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      |.++..    .....+.+|.|.+++..|+|.|+|.|.|..|... ..+.|.|.
T Consensus       256 ~~~l~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~  303 (313)
T 4fqp_A          256 MGPLPP----FAVAQGAQLLIRPVDKPINTTLICNVTNALGARQ-AELTVQVK  303 (313)
T ss_dssp             TBSCCT----TEEEETTEEEECCCSSCCEEEEEEEEECSSCEEE-EEEEEEEE
T ss_pred             CEECCC----ceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEE-EEEEEEEE
Confidence            987753    2344567899999999999999999999999655 67888888

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.87  E-value=8.3e-21  Score=165.69  Aligned_cols=194  Identities=11%  Similarity=0.161  Sum_probs=138.7

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +.+.+.+.|......+....+.+|+.+.|.|.+.+.|.+..+.|++.+...+..........++   .|.|.+++.+|.|
T Consensus        81 ~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G  157 (289)
T 3ejj_X           81 IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR---GFIIRKAKVLDSN  157 (289)
T ss_dssp             EEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTT---EEEESSCCGGGCE
T ss_pred             EEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCC---CEEEeecccccCE
Confidence            3455555554344445677789999999999977766662499987443315544444444455   6999999999999


Q ss_pred             EEEEEEEe-CCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeE
Q psy3823          84 TLLCWARN-EQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGIT  161 (365)
Q Consensus        84 ~Y~C~a~~-~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~  161 (365)
                      .|+|.+.+ ..+.....+.|.|...     +..+|.+...+..    ..+.+|+.+.|.|.+.+ .|.+. +.|++++..
T Consensus       158 ~Y~C~a~~~~~~~~~~~~~l~V~~~-----~~~~p~i~~~~~~----~~~~~g~~~~l~C~~~~~~p~~~-i~W~~~~~~  227 (289)
T 3ejj_X          158 TYVCKTMVNGRESTSTGIWLKVNRV-----HPEPPQIKLEPSK----LVRIRGEAAQIVCSATNAEVGFN-VILKRGDTK  227 (289)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEESS-----CCCCCEEEEESSS----EECCSSSCEEEEEEEEESSSCCE-EEEEETTEE
T ss_pred             EEEEEEEeCCCccccccEEEEEEEC-----CCCCCeEEecCCc----eEEEeCCcEEEEEEeCCCCCceE-EEEEECCEE
Confidence            99999994 4444457888888310     0157777766532    35678999999999998 56665 999999988


Q ss_pred             EeeCCC----CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         162 ISNNAS----AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       162 l~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      +.....    .........|.|.+++.+|+|.|+|.|.|..|... .++.|.+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~s~~L~~~  280 (289)
T 3ejj_X          228 LEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRT-ATMNFQVV  280 (289)
T ss_dssp             CCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEE-EEEEEECC
T ss_pred             eeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCcc-ccEEEEEE
Confidence            754211    12233367899999999999999999999999766 56666655

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.87  E-value=2.6e-21  Score=161.46  Aligned_cols=180  Identities=11%  Similarity=0.098  Sum_probs=122.0

Q ss_pred             cceecC--CcEEEEEEEEecCCCCeeEEEeC---CeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcc
Q psy3823         130 SVLNEG--VDIYFDCHIQANPPYKKLIWTHN---GITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGST  204 (365)
Q Consensus       130 ~~~~~g--~~v~l~C~~~~~p~~~~i~W~~~---~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~  204 (365)
                      ..+.+|  +++.|.|.+.+ |.+. +.|+++   +..+... ..........|.|.+++..|+|.|+|.+.|..+...+.
T Consensus        17 v~v~eG~~~~v~L~C~~~~-p~~~-v~w~~~~~~g~~~~~~-~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~   93 (213)
T 2x1w_L           17 VYITENKNKTVVIPCLGSI-SNLN-VSLCARYPEKRFVPDG-NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSI   93 (213)
T ss_dssp             EEECCSTTCEEEECCCBSS-TTCC-EEEEEETTTEEECCCS-SSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECC
T ss_pred             EEEecCCCccEEEeeccCC-CCcE-EEEEhhcCCCccccCC-CcccccCCccEEEccCChhcCceEEEEEEECCeeEEEE
Confidence            467899  99999999876 6665 999884   5555432 22222335689999999999999999999865544444


Q ss_pred             cEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCC-ceeEe--e---
Q psy3823         205 PFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPL-TSYSI--Q---  277 (365)
Q Consensus       205 ~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~-~~~~~--~---  277 (365)
                      .+.|.|...        ..|.+...+.....+..|+.++|.|.+.+.|.+. .+.|+++|........ .....  .   
T Consensus        94 ~~~l~v~~~--------~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~  165 (213)
T 2x1w_L           94 MYIVVVVGY--------RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE  165 (213)
T ss_dssp             CEEEEECBC--------CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCS
T ss_pred             EEEEEEeCC--------cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCcc
Confidence            467776510        1233333233332488999999999999866432 3999998874322100 00110  0   


Q ss_pred             -CCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCc
Q psy3823         278 -DGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       278 -~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  320 (365)
                       ....+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..++
T Consensus       166 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          166 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             CEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             ceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence             1224579999999999999999999999999999999987653

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.87  E-value=5.7e-21  Score=159.34  Aligned_cols=177  Identities=14%  Similarity=0.125  Sum_probs=123.7

Q ss_pred             CceEEEEecC--CcEEEEEEeCCCCCcceEEEEeC---CCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeC
Q psy3823          18 QQRIYGALRN--EQVLVSCTVDANPQAQYFTWAFN---NSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE   92 (365)
Q Consensus        18 ~~~~~~v~~G--~~~~l~C~~~~~p~~~~v~W~~~---~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~   92 (365)
                      ++..+.+.+|  ++++|.|.+.+ |.+ .++|+++   +.. +............   .|.|.+++.+|+|.|+|.|.+.
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~-~v~w~~~~~~g~~-~~~~~~~~~~~~~---~l~I~~v~~~D~G~Y~C~a~n~   86 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNL-NVSLCARYPEKRF-VPDGNRISWDSKK---GFTIPSYMISYAGMVFCEAKIN   86 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTC-CEEEEEETTTEEE-CCCSSSCEEETTT---EEEEEGGGTTTCSEEEEEEC--
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCc-EEEEEhhcCCCcc-ccCCCcccccCCc---cEEEccCChhcCceEEEEEEEC
Confidence            4577888999  99999999765 777 9999885   544 5544333333444   6999999999999999999885


Q ss_pred             CCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC-CCeeEEEeCCeEEeeC-----
Q psy3823          93 QGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP-YKKLIWTHNGITISNN-----  165 (365)
Q Consensus        93 ~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~~i~W~~~~~~l~~~-----  165 (365)
                      .+... ..+.|.|..       ..+|.+.+.+..   ...+.+|++++|.|.+.+.|. +..+.|++++..+...     
T Consensus        87 ~~~~~s~~~~l~v~~-------~~~p~~~~~~~~---~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~  156 (213)
T 2x1w_L           87 DESYQSIMYIVVVVG-------YRIYDVVLSPSH---GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR  156 (213)
T ss_dssp             --CEECCCEEEEECB-------CCEEEEEEESCS---CEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEE
T ss_pred             CeeEEEEEEEEEEeC-------CcccceEEcCCC---CeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEecc
Confidence            44333 447777721       123445555432   236889999999999998654 3349999988653210     


Q ss_pred             --CCCc---eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         166 --ASAG---RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       166 --~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                        ....   ......+|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       157 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~  206 (213)
T 2x1w_L          157 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK-NSTFVRVH  206 (213)
T ss_dssp             EECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEE-EEEEEEEE
T ss_pred             ccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEE-EEEEEEEe
Confidence              0000   022345799999999999999999999998664 77888888

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.86  E-value=1.9e-21  Score=160.08  Aligned_cols=160  Identities=14%  Similarity=0.183  Sum_probs=105.5

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC--cccE
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ--RTPC  100 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~--~~~~  100 (365)
                      .+.+|++++|.|.+.+.| . .+.|+|++.. +..... ..........|.|.+++.+|+|.|+|.+.+..+..  ...+
T Consensus        15 ~v~~G~~v~L~C~~~~~~-~-~~~W~k~g~~-~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~   90 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEA-Q-EYRLVKEGSP-EPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPL   90 (196)
T ss_dssp             EEETTCCEEEEEECCTTC-C-EEEEEETTCS-SCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCE
T ss_pred             cccCCCeEEEEEeCCCCC-c-EEEEEECCCC-CCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccE
Confidence            678999999999987654 4 8999999987 542211 01122345589999999999999999999876643  3667


Q ss_pred             EEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceE----Eeece
Q psy3823         101 TFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI----ITNQT  176 (365)
Q Consensus       101 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~----~~~~~  176 (365)
                      .|.|...      ..+|.+...+     ...+.+|+.++|.|.+.+.| +. +.|+++|..+.........    .....
T Consensus        91 ~l~V~~~------~~~p~i~~~~-----~~~v~~G~~v~L~C~~~~~p-~~-~~W~k~g~~~~~~~~~~~~~~~~~~~~~  157 (196)
T 2d3v_A           91 ELVVTGF------YNKPTLSALP-----SPVVTSGENVTLQCGSRLRF-DR-FILTEEGDHKLSWTLDSQLTPSGQFQAL  157 (196)
T ss_dssp             EEEEECS------SCCCEEEC----------------CEEEEEESSCC-SE-EEEEEC---CCEEEEECEECTTSCEEEE
T ss_pred             EEEecCC------CCCCeEEccC-----CccccCCCcEEEEEEcCCCC-CE-EEEEccCCcccccccccccccCCCceeE
Confidence            8888321      1245554322     13578999999999999877 54 9999999876421110011    12368


Q ss_pred             EEEeeecCCCCeEEEEEEEcCCC
Q psy3823         177 LVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       177 l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      |.|.+++.+|+|.|+|.|.|..+
T Consensus       158 L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          158 FPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EECCCCBTTBCEEEEEEEEETTE
T ss_pred             EEeeecCcccCeeEEEEEEccCC
Confidence            99999999999999999998754

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.86  E-value=6.9e-21  Score=156.92  Aligned_cols=170  Identities=16%  Similarity=0.204  Sum_probs=116.8

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce--eEecCCeEEEEEEccCCCCCCeEEEEEEEeCC-C--CCc
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS--YSIQDGSTSVARYTPTSELEYGTLLCWARNEQ-G--NQR   97 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~-~--~~~   97 (365)
                      .+.+|++++|.|.+.+.|.  .+.|+|++.. +......  ......   .|.|.+++.+|+|.|+|.+.|.. +  ...
T Consensus        15 ~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~-~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s   88 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ--EYRLYREKKT-APWITRIPQELVKKG---QFPIPSITWEHTGRYRCYYGSDTAGRSESS   88 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC--CEEEEESSSC-CHHHHTSCHHHHTTT---EEEESSCCGGGCEEEEEEEEETTTEECCCC
T ss_pred             cccCCCcEEEEEEecCCCc--EEEEEECCcc-ccccccccccCCccc---EEEECCCCHHHCeEEEEEEECCCCCcccCC
Confidence            6789999999999877664  6999999987 5311110  111233   79999999999999999999976 4  334


Q ss_pred             ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc-eEE---e
Q psy3823          98 TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG-RII---T  173 (365)
Q Consensus        98 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~-~~~---~  173 (365)
                      ..+.|.|...      ..+|.+...+     ...+.+|++++|.|.+.+. .+. +.|+++|..+....... ...   .
T Consensus        89 ~~~~l~V~~~------~~~p~i~~~~-----~~~v~~G~~v~L~C~~~~~-~~~-v~W~k~g~~~~~~~~~~~~~~~~~~  155 (198)
T 1ugn_A           89 DPLELVVTGA------YIKPTLSAQP-----SPVVNSGGNVTLQCDSQVA-FDG-FILCKEGEDEHPQCLNSQPHARGSS  155 (198)
T ss_dssp             CCEEEEEECS------SCCCEEEEES-----CSEEETTCCEEEEEECSSC-CSE-EEEEEC------CEEEC------CC
T ss_pred             ccEEEEEccc------ccCCccccCC-----ccccCCCCcEEEEEecCCC-CcE-EEEEECCCccCCccccccccCCCcc
Confidence            7788888311      1245554432     2367899999999999887 444 99999998774211110 111   1


Q ss_pred             eceEEEeeecCCCCeEEEEEEEcCCCC----CCcccEEEEEe
Q psy3823         174 NQTLVLQSVTRHSGGLYACSAINSQGE----GGSTPFDLNIN  211 (365)
Q Consensus       174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~----~~s~~~~l~v~  211 (365)
                      ...|.|.+++.+|+|.|+|.|.|..+.    ..+..+.|.|.
T Consensus       156 ~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          156 RAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             eeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            478999999999999999999998653    23566777664

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=6.9e-21  Score=163.09  Aligned_cols=212  Identities=14%  Similarity=0.128  Sum_probs=121.3

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC-----C
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQG-----N   95 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~-----~   95 (365)
                      ..+.+|++++|.|.+.. +.+ .|.|+|++.. +...... ..........|.|.+++.+|+|.|+|.+.+...     .
T Consensus        16 ~~V~~G~~VtL~C~~~~-~~~-~~~W~k~g~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~   92 (257)
T 1b6u_A           16 PLVKSEETVILQCWSDV-RFQ-HFLLHREGKF-KDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSA   92 (257)
T ss_dssp             SEEESSCCEEEEEEESS-CCS-EEEEEEESTT-CEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCC
T ss_pred             CEecCCCCEEEEEecCC-CCc-EEEEEECCCC-CCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccc
Confidence            55789999999999764 456 9999999876 4311100 001223455899999999999999999986432     2


Q ss_pred             CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceE---E
Q psy3823          96 QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI---I  172 (365)
Q Consensus        96 ~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~---~  172 (365)
                      ....+.|.|...      ..+|.+...+.     ..+.+|++|+|.|.+.+.+ + .+.|+++|..+.........   .
T Consensus        93 ~S~~~~L~V~~~------~~~P~l~~~p~-----~~V~~G~~vtL~C~~~~~~-~-~~~w~k~g~~~~~~~~~~~~~~~~  159 (257)
T 1b6u_A           93 PSDPLDIVITGL------YEKPSLSAQPG-----PTVLAGESVTLSCSSRSSY-D-MYHLSREGEAHERRFSAGPKVNGT  159 (257)
T ss_dssp             CCCCEEEEEECS------SCCCEEECSSC-----TTCBTTCEEEEEEECSSCC-S-EEEEEETTSSCEECCBCBCCSSSC
T ss_pred             cCCCEEEecccC------CCCcceEccCC-----CccCCCCEEEEEEeCCCCC-c-EEEEEECCcccCcccccccccCCc
Confidence            236678888321      33566554432     2578999999999987653 3 49999999876542211111   1


Q ss_pred             eeceEEEeeecCCCCeEEEEEEEcCCC----CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEE
Q psy3823         173 TNQTLVLQSVTRHSGGLYACSAINSQG----EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV  248 (365)
Q Consensus       173 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~  248 (365)
                      .+..|.|.+++  |+|.|+|.+.+...    ...+..+.|.|.          ..|....+.........|..+.|.|.+
T Consensus       160 ~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~----------g~p~~~~p~~~~~~~~~g~~~~l~~~~  227 (257)
T 1b6u_A          160 FQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVT----------GNPSNSWPSPTEPSSETGNPRHLHAAA  227 (257)
T ss_dssp             CBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCB----------CCC------------------------
T ss_pred             eeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEe----------ccCCCCCCCCcccCccCCCeEEEEEEE
Confidence            25689999998  99999999997532    344577888888          777655333322235678889999877


Q ss_pred             eeeCCCceeEEEeCC
Q psy3823         249 DANPQAQYFTWAFNN  263 (365)
Q Consensus       249 ~~~p~~~~~~W~~~~  263 (365)
                       |.+-+. +.|...+
T Consensus       228 -~~~~~~-~~~~~~~  240 (257)
T 1b6u_A          228 -EQKLIS-EEDLNLD  240 (257)
T ss_dssp             ---------------
T ss_pred             -cchHHH-HHHhhhh
Confidence             455565 8998754

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.86  E-value=2.4e-20  Score=151.87  Aligned_cols=172  Identities=15%  Similarity=0.175  Sum_probs=123.0

Q ss_pred             ccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823           9 TDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus         9 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      ...|.+... +.. .+.+|++++|.|.+.+ |.+ .+.|+|++.. .       .....   .|.|.+++.+|+|.|+|.
T Consensus         6 ~~~P~i~~~-p~~-~v~~G~~v~L~C~~~~-~~~-~~~W~k~g~~-~-------~~~~~---~L~i~~v~~~D~G~Y~C~   70 (184)
T 2gi7_A            6 LPKPSLQAL-PSS-LVPLEKPVTLRCQGPP-GVD-LYRLEKLSSS-R-------YQDQA---VLFIPAMKRSLAGRYRCS   70 (184)
T ss_dssp             BCCCEEEEE-SCS-EEETTCCEEEEEECST-TCS-EEEEEETTTC-C-------EESSS---EEEESSCCGGGCEEEEEE
T ss_pred             CCCCeEEeC-CCc-cccCCCcEEEEEeCCC-CCC-EEEEEECCcc-c-------cCccc---EEEECcCChhhCceEEEE
Confidence            344544332 222 6889999999999766 777 9999999865 1       12333   799999999999999999


Q ss_pred             EEeCCCC--CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCC
Q psy3823          89 ARNEQGN--QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNA  166 (365)
Q Consensus        89 a~~~~~~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~  166 (365)
                      +.+..+.  ....+.|.|...      ..+|.+...+.     ..+.+|+.++|.|.+.+.+ + .+.|+++|..+... 
T Consensus        71 a~n~~g~~~~s~~~~l~V~~~------~~~p~i~~~p~-----~~v~~G~~v~l~C~~~~~~-~-~~~w~k~g~~~~~~-  136 (184)
T 2gi7_A           71 YQNGSLWSLPSDQLELVATGV------FAKPSLSAQPG-----PAVSSGGDVTLQCQTRYGF-D-QFALYKEGDPAPYK-  136 (184)
T ss_dssp             EEETTEEBCCCCCEEEEEESS------SCCCEEEEECC-----CSSCCTTCEEEEEECSSCC-C-EEEEEECCCCTTSC-
T ss_pred             EEcCCCccCCCCCEEEEecCc------CCCCEEEeCCC-----ceecCCCcEEEEEEcCCCC-c-EEEEEECCCcCcce-
Confidence            9997753  236677877311      23566665542     3577999999999976644 4 49999999876532 


Q ss_pred             CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC----CCcccEEEEE
Q psy3823         167 SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE----GGSTPFDLNI  210 (365)
Q Consensus       167 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~----~~s~~~~l~v  210 (365)
                       .........|.|.+++.+|+|.|+|.+.|..+.    ..+..+.|.|
T Consensus       137 -~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          137 -NPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             -CCCEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             -ecCCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence             123344678999999999999999999997543    2344555543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.86  E-value=2.9e-21  Score=156.06  Aligned_cols=169  Identities=17%  Similarity=0.205  Sum_probs=124.4

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEE
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSA  194 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  194 (365)
                      .+|.+...+..    ..+.+|++++|.|.+.+.+.+..+.|++++..+..        .+..|.|.+++.+|+|.|+|.+
T Consensus         3 ~~P~i~~~p~~----~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~   70 (176)
T 1f2q_A            3 QKPKVSLNPPW----NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TNSSLNIVNAKFEDSGEYKCQH   70 (176)
T ss_dssp             -CCCCEEESSC----SEEETTCCEEEECCTTCC----CCEEEETTEECSC--------CSSEEEECSCCGGGCEEEEEEC
T ss_pred             CCCEEEcCCCC----cceecCCcEEEEEeCCCCCCcceEEEEECCeECCC--------CceEEEEeccceecCEEEEEEc
Confidence            46777776533    46889999999999988877655999999988753        2478999999999999999999


Q ss_pred             EcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEe-eeCCCceeEEEeCCCCCCCCCCce
Q psy3823         195 INSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSDTAPRPLTS  273 (365)
Q Consensus       195 ~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~~W~~~~~~~~~~~~~~  273 (365)
                      .|..+   +..+.|.|.          .++.+......  .+..|+.+.|.|.+. +.|.+. +.|+++|.....     
T Consensus        71 ~~~~~---s~~~~l~V~----------~~~~~~~~~~~--~~~~g~~~~l~C~~~~~~p~~~-~~W~~~g~~~~~-----  129 (176)
T 1f2q_A           71 QQVNE---SEPVYLEVF----------SDWLLLQASAE--VVMEGQPLFLRCHGWRNWDVYK-VIYYKDGEALKY-----  129 (176)
T ss_dssp             TTSSC---CCCEEEEEE----------CSSEEEEESCS--EEETTSCEEEEEEEGGGCCEEE-EEEEETTEECCS-----
T ss_pred             CCccc---cccEEEEEe----------CcceeecCCcc--eeeCCCCEEEEEEecCCCCceE-EEEEECCEEEee-----
Confidence            87553   345778877          55544433222  278999999999995 455666 999998864421     


Q ss_pred             eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc-cceecEEEEEEcCc
Q psy3823         274 YSIQDGSTSVARYTPTSELEYGTLLCWARNEQG-SQRTPCTFHVVKAG  320 (365)
Q Consensus       274 ~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~~  320 (365)
                          ......|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|..++
T Consensus       130 ----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p  173 (176)
T 1f2q_A          130 ----WYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP  173 (176)
T ss_dssp             ----CCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             ----ecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCC
Confidence                11224699999999999999999999754 45566888887554

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.86  E-value=1e-21  Score=162.91  Aligned_cols=176  Identities=18%  Similarity=0.308  Sum_probs=127.7

Q ss_pred             CccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEe----------eCCCCceEEeeceEEEeeecCCCCeEEEEEEEcC
Q psy3823         128 NASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITIS----------NNASAGRIITNQTLVLQSVTRHSGGLYACSAINS  197 (365)
Q Consensus       128 ~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~----------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  197 (365)
                      ....+.+|+++.|.|.+.+.|.+. +.|++++..+.          .....+.......|.|.+++.+|+|.|+|.+.+.
T Consensus        12 ~~~~v~~G~~v~L~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   90 (209)
T 1nbq_A           12 PEVRIPENNPVKLSCAYSGFSSPR-VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE   90 (209)
T ss_dssp             SBCCEETTCCCEEECEEESCSSEE-EEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred             CceEEEcCCCEEEEEEEeCCCCcE-EEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEecC
Confidence            334688999999999999887666 99999765531          1112234444588999999999999999999998


Q ss_pred             CCCC-CcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCc---
Q psy3823         198 QGEG-GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLT---  272 (365)
Q Consensus       198 ~~~~-~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~---  272 (365)
                      .+.. .+..+.|.|.          .+|.+........ +..|+.+.|.|.+ .+.|.+. +.|++++.........   
T Consensus        91 ~g~~~~~~~~~l~V~----------~~p~~~~~~~~~~-~~~g~~~~l~C~~~~~~p~~~-v~W~~~~~~~~~~~~~~~~  158 (209)
T 1nbq_A           91 GGNSYGEVKVKLIVL----------VPPSKPTVNIPSS-ATIGNRAVLTCSEQDGSPPSE-YTWFKDGIVMPTNPKSTRA  158 (209)
T ss_dssp             TSSCEECCEEECCEE----------BCCCCCCCCCBSE-EETTSCEEECCCCCSCBSCCE-EEEEETTCCCCSCSSSSSS
T ss_pred             CCCccceEEEEEEEe----------cCCcCCCcccccc-eecCCEEEEEEeCCCCCCCce-eEEEECCeeCCCcccccee
Confidence            6632 2356677777          6666554333322 7899999999997 8899997 9999998754332211   


Q ss_pred             ---eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc--eecEEEEE
Q psy3823         273 ---SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ--RTPCTFHV  316 (365)
Q Consensus       273 ---~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~v  316 (365)
                         ..+......+.|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|
T Consensus       159 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          159 FSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             CTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             eeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence               111112233469999999999999999999999998  44455544

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.86  E-value=8.1e-21  Score=152.41  Aligned_cols=158  Identities=17%  Similarity=0.268  Sum_probs=119.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC-CcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP-QAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p-~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      +....+.+|+.+.|.|.+.+.| .+ .+.|++++.. +.....          .+.+.+++.+|+|.|+|.+.+..  ..
T Consensus        11 p~~~~v~~G~~v~l~C~~~~~p~~~-~~~W~~~g~~-~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~~~--~s   76 (170)
T 3ry4_A           11 PPWINVLQEDSVTLTCQGARSPESD-SIQWFHNGNL-IPTHTQ----------PSYRFKANNNDSGEYTCQTGQTS--LS   76 (170)
T ss_dssp             SCCSEEETTCEEEEEEESCCCSSSS-CEEEEETTEE-CTTCCS----------SEEEEECCGGGCEEEEEEETTSB--CC
T ss_pred             CCCeEEECCCcEEEEEEecCCCCcc-eEEEEECCeE-cccCcc----------ceEEEecccccCeEEEEEEeCCC--ce
Confidence            3445678999999999977776 45 9999999987 654321          35567899999999999998643  33


Q ss_pred             ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceE
Q psy3823          98 TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTL  177 (365)
Q Consensus        98 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l  177 (365)
                      ..+.|.|         ..+|.+.. .    ....+.+|+.+.|.|.+.+.++...+.|+++|..+....      .+..|
T Consensus        77 ~~~~l~v---------~~~~~~~~-~----~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~------~~~~L  136 (170)
T 3ry4_A           77 DPVHLTV---------LFEWLVLQ-T----PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH------LDPTF  136 (170)
T ss_dssp             CCEEEEE---------ECCSEEEE-C----SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES------SCCEE
T ss_pred             EeEEEEE---------ECCceEec-C----CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC------CCCeE
Confidence            5678888         44554332 2    223678899999999996554434599999999876322      24689


Q ss_pred             EEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         178 VLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       178 ~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      .|.+++.+|+|.|+|.+.|..|...+..+.|.|
T Consensus       137 ~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          137 SIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            999999999999999999998865556677765

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.86  E-value=2.1e-20  Score=163.24  Aligned_cols=183  Identities=17%  Similarity=0.283  Sum_probs=129.6

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe-CCeEEeeCCCCceEEe--eceEEEeeecCCCCeEEEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~-~~~~l~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C  192 (365)
                      +|.+.+.+    .+..+.+|+.+.|.|.+.+.|.  .+.|++ +|..+...........  ..+|.|.+++.+|+|.|+|
T Consensus         4 ~p~v~~~~----~~~~v~~G~~v~l~C~~~~~p~--~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   77 (291)
T 2wim_A            4 LLQVTISL----SKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC   77 (291)
T ss_dssp             CCEEEESC----SEEEEETTCCEEEEEEEESCCS--EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CceEEEec----cceEecCCCcEEEEEEEeCCCC--ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEE
Confidence            55555544    3457889999999999998764  499999 6766654332212211  3489999999999999999


Q ss_pred             EEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-CC
Q psy3823         193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-PL  271 (365)
Q Consensus       193 ~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-~~  271 (365)
                      .+.|..|...+..+.|.|.          .+|.+....... .+..|+.+.|.|.+.+.|.+. +.|++++...... ..
T Consensus        78 ~~~n~~g~~~~~~~~l~v~----------~~~~~~~~~~~~-~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~  145 (291)
T 2wim_A           78 QATDAKGQTQEATVVLEIY----------QKLTFREVVSPQ-EFKQGEDAEVVCRVSSSPAPA-VSWLYHNEEVTTISDN  145 (291)
T ss_dssp             EEECSSSCEEEEEEEEEEE----------CCCBCCSCCCSE-EEETTSCEEECCCCBCSSCCE-EEEECC----CBCCCS
T ss_pred             EEecccCceEEEEEEEEec----------CCcceEeCCCCh-hhcCCCCEEEEEEEccCCCCE-EEEEECCccccccCCc
Confidence            9999888765567778887          667655443333 388999999999999999998 9999988644321 22


Q ss_pred             ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce--ecEEEEEEcC
Q psy3823         272 TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR--TPCTFHVVKA  319 (365)
Q Consensus       272 ~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~  319 (365)
                      ......++   .|.|.+++.+|+|.|+|.|.|..+...  ..+.+.|..+
T Consensus       146 ~~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~  192 (291)
T 2wim_A          146 RFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP  192 (291)
T ss_dssp             SEEECTTS---CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBC
T ss_pred             eEEEccCC---CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccC
Confidence            22222233   399999999999999999999886533  4445555433

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.86  E-value=2.4e-21  Score=163.21  Aligned_cols=191  Identities=18%  Similarity=0.263  Sum_probs=135.5

Q ss_pred             ccCCeEeeC---CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeE
Q psy3823           9 TDEPVCKQS---QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus         9 ~~~p~~~~~---~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      ..+|.+...   ......+.+|+.+.|.|.+.+.|.+ .+.|++++.. +...... ..........|.|.+++.+|+|.
T Consensus        13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~   90 (231)
T 3ojm_B           13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKE-FKQEHRIGGYKVRNQHWSLIMESVVPSDKGN   90 (231)
T ss_dssp             CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCC-EEEEEETTEE-CCGGGSTTCCEEEGGGTEEEECSCCGGGCEE
T ss_pred             ccCCccccccccCceeEEEccCCCEEEEEecccCCCC-eEEEEECCcc-ccccccccceeeecCcceEEEecCCcccCEE
Confidence            345555432   2367788999999999998788998 9999999987 5433221 00111112379999999999999


Q ss_pred             EEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe----CCe
Q psy3823          85 LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH----NGI  160 (365)
Q Consensus        85 Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~----~~~  160 (365)
                      |+|.+.+..+.....+.|.|...     +..+|.+.....   ....+.+|+.+.|.|.+.+.|.+. +.|++    +|.
T Consensus        91 Y~C~~~n~~~~~~~~~~l~V~~~-----~~~~p~~~~~~~---~~~~~~~g~~~~l~C~~~~~p~p~-v~W~~~~~~~g~  161 (231)
T 3ojm_B           91 YTCVVENEYGSINHTYHLDVVER-----SRHRPILQAGLP---ANASTVVGGDVEFVCKVYSDAQPH-IQWIKHVEKNGS  161 (231)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECC-----CCCCCEECTTCS---CCEEEETTCCEEEECCEECSSCCE-EEEEEECCBTTB
T ss_pred             EEEEEecccCcccccEEEEEEcC-----CCCCCceeeccC---CceEEEeCCcEEEEEEEecCCCCE-EEEEECCCCCCc
Confidence            99999998887777788887321     011232211111   334678899999999999988886 99999    777


Q ss_pred             EEeeCCCCceE---------EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         161 TISNNASAGRI---------ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       161 ~l~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      .+.........         .....|.|.++...|+|.|+|.+.|..|... ..+.|.|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~  220 (231)
T 3ojm_B          162 KYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQAN-QSAWLTVL  220 (231)
T ss_dssp             SBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             cccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEe-eEEEEEEe
Confidence            66433221111         1134699999999999999999999998764 67888888

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.85  E-value=5.2e-20  Score=153.33  Aligned_cols=171  Identities=15%  Similarity=0.194  Sum_probs=120.6

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|.+.+.|.+ .+.|+|++... +            ...........+....|.|.+++.+|+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   86 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGN-NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CccEEEeCCCcEEEEEECCCCCCC-CEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEE
Confidence            456778999999999998888888 89999864320 1            001121222234455899999999999999


Q ss_pred             EEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEe
Q psy3823          86 LCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITIS  163 (365)
Q Consensus        86 ~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~  163 (365)
                      +|.+.+..+... ....|.|...      ..+|.+.+....    ....+|+.++|.|.+.+ .|++..+.|+++|..+.
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~------~~~p~v~~~~~~----~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  156 (213)
T 3d9a_L           87 FCQQSNSWPYTFGGGTKLEIKRA------DAAPTVSIFPPS----SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  156 (213)
T ss_dssp             EEEECSSSSCEECCCEEEEECCC------CBCCEEEEECCC----HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             EEeeecCCcceeCCCEEEEEecC------CCCceeEeECCC----hhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCc
Confidence            999998766433 4457777211      236776665432    23447999999999997 55554699999999886


Q ss_pred             eC-C--------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         164 NN-A--------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       164 ~~-~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .. .        ..+.......|.|.++..+|+|.|+|.|.|....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          157 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  202 (213)
T ss_dssp             TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             ceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence            43 0        0111122458999999999999999999997654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.85  E-value=9.8e-20  Score=151.37  Aligned_cols=171  Identities=14%  Similarity=0.204  Sum_probs=119.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc-CC------------CCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-TA------------PRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~-~l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +....+.+|+.++|.|.+.+.|.+ .+.|+++... .+            ...........+....|.|.+++.+|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTS-RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY   85 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCC-CEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEE
Confidence            566788999999999998888888 9999995421 01            001111222233445899999999999999


Q ss_pred             EEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEe
Q psy3823          86 LCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITIS  163 (365)
Q Consensus        86 ~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~  163 (365)
                      +|.+.+..+... ....|.|...      ..+|.+.+.+..    ....+|+.++|.|.+.| .|++..+.|+++|..+.
T Consensus        86 ~C~~~~~~~~~~~~~~~l~V~~~------~~~P~v~~~~~~----~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~  155 (210)
T 1lk3_L           86 FCQQSWNGPLTFGAGTKLELKRA------DAAPTVSIFPPS----TEQLATGGASVVCLMNNFYPRDISVKWKIDGTERR  155 (210)
T ss_dssp             EEEECSSSSCEECCCEEEEECCC------CBCCEEEEECCC----HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             EEEEEcCCCceeCCCEEEEEcCC------CcCCeEEEECCc----hhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCC
Confidence            999998765432 4457777211      236776665432    23448999999999997 45544699999999875


Q ss_pred             eC-C--------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         164 NN-A--------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       164 ~~-~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .. .        ..+.......|.|.++..+|+|.|+|.|.|....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          156 DGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            43 0        0111122347999999999999999999997653

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=3.8e-20  Score=151.21  Aligned_cols=180  Identities=13%  Similarity=0.169  Sum_probs=125.3

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCC-CceEEeeceEEEeeecCCCCeEEEEE
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNAS-AGRIITNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      .+|.+...+..     .+.+|++|+|.|.+.+.  +..+.|+++|..+..... ......+..|.|.+++..|+|.|+|.
T Consensus         3 ~~P~i~~~p~~-----~v~~G~~v~L~C~~~~~--~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   75 (188)
T 1oll_A            3 PKPFIWAEPHF-----MVPKEKQVTICCQGNYG--AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI   75 (188)
T ss_dssp             CCCEEEEESCS-----EEETTCCEEEEEECCTT--CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeecCC-----cCCCCCCEEEEEecCCC--CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEE
Confidence            46777776532     58899999999998653  334999999988753211 11122357899999999999999999


Q ss_pred             EEcCCCC-CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCc
Q psy3823         194 AINSQGE-GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLT  272 (365)
Q Consensus       194 ~~~~~~~-~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~  272 (365)
                      +.+..+. ..+..+.|.|..       ...+|.+...+ .. .+.+|+.++|.|.+.+ +++. +.|+++|.....    
T Consensus        76 ~~~~~~~~~~s~~~~l~V~~-------~~~~p~i~~~p-~~-~v~~G~~v~L~C~~~~-~~~~-~~w~k~g~~~~~----  140 (188)
T 1oll_A           76 YRVGELWSEPSNLLDLVVTE-------MYDTPTLSVHP-GP-EVISGEKVTFYCRLDT-ATSM-FLLLKEGRSSHV----  140 (188)
T ss_dssp             EEETTEECCCCCCEEEEEES-------CSCCCEEEEES-CS-EEETTCEEEEEEECSS-SCSE-EEEEEESSSCEE----
T ss_pred             ecCCCCCCCCCCceEEEecc-------cCCCCeEEECC-CC-ccccCCEEEEEEEcCC-CCCE-EEEEECCccccc----
Confidence            9887542 334667788761       01255554333 22 2789999999999865 4566 999998864321    


Q ss_pred             eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC---ccceecEEEEEE
Q psy3823         273 SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ---GSQRTPCTFHVV  317 (365)
Q Consensus       273 ~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~---g~~~~~~~l~v~  317 (365)
                       ..........|.|.+++.+|+|.|+|.|.|..   ...+..+.|.|.
T Consensus       141 -~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          141 -QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             -EEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             -cccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence             11123445679999999999999999999865   234556666653

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=155.58  Aligned_cols=178  Identities=17%  Similarity=0.171  Sum_probs=126.7

Q ss_pred             ccceecCCcEEEEEE-EEecCC-CCeeEEEeCCeEEeeCCCCceEE--eeceEEEeeecCCCCeEEEEEEEcCCCCCC--
Q psy3823         129 ASVLNEGVDIYFDCH-IQANPP-YKKLIWTHNGITISNNASAGRII--TNQTLVLQSVTRHSGGLYACSAINSQGEGG--  202 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~-~~~~p~-~~~i~W~~~~~~l~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--  202 (365)
                      ...+.+|+.+.|.|. +.+.|. +. +.|++++..+..........  .+.+|.|.+++.+|+|.|+|.+.+..+...  
T Consensus        17 ~~~v~~G~~v~L~C~~~~~~p~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   95 (201)
T 3s97_C           17 EVRVKEGKGMVLLCDPPYHFPDDLS-YRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVF   95 (201)
T ss_dssp             CEEEETTCCEEECCCCCSEESSCCE-EEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEE
T ss_pred             eEEEECCCCEEEeccccccCCCceE-EEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchh
Confidence            346889999999999 778877 55 99999987775322222222  367899999999999999999998765432  


Q ss_pred             cccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEE
Q psy3823         203 STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTS  282 (365)
Q Consensus       203 s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s  282 (365)
                      ...+.+.+....   .....+|.+..... ...+..|+.+.|.|.+.+.|.+. +.|++++......   ......+  .
T Consensus        96 ~~~~~~~~~~~~---~~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p~-v~W~~~~~~~~~~---~~~~~~~--~  165 (201)
T 3s97_C           96 SKFIPLIPIPER---TTKPYPADIVVQFK-DVYALMGQNVTLECFALGNPVPD-IRWRKVLEPMPST---AEISTSG--A  165 (201)
T ss_dssp             CCCEEEEEECCS---SCCCEEEEEEEECC-CEEEETTCCEEEEEEEEEESCCE-EEEEETTBCCCTT---CEEETTT--T
T ss_pred             hcccceeecccc---ccCCCCCceEecCC-ceEEecCCcEEEEEEccCCCCCc-eEEEeCCCcCCCc---eeecCCC--C
Confidence            133444443100   00012333333333 33488999999999999999998 9999988743221   2222222  3


Q ss_pred             EEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         283 VARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       283 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      .|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       166 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          166 VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            59999999999999999999999999998888875

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.85  E-value=1.9e-20  Score=150.17  Aligned_cols=164  Identities=16%  Similarity=0.220  Sum_probs=122.3

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI  195 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  195 (365)
                      +|.+.+.+.    ...+.+|+.+.|.|.+.+.|.+..+.|+++|..+...        ...+.+.+++..|+|.|+|.+.
T Consensus         4 ~p~i~~~p~----~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~--------~~~~~~~~~~~~d~G~Y~C~~~   71 (170)
T 3ry4_A            4 KAVLKLEPP----WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH--------TQPSYRFKANNNDSGEYTCQTG   71 (170)
T ss_dssp             BCEEEEESC----CSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC--------CSSEEEEECCGGGCEEEEEEET
T ss_pred             CCEEEeCCC----CeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC--------ccceEEEecccccCeEEEEEEe
Confidence            556666653    2468899999999999988744459999999988642        3456778999999999999998


Q ss_pred             cCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCCceeEEEeCCCCCCCCCCcee
Q psy3823         196 NSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTSY  274 (365)
Q Consensus       196 ~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~~  274 (365)
                      +...   +..+.|.|.          ..|.+...+..  .+..|+.+.|.|.+.+ .|.+. +.|+++|....       
T Consensus        72 ~~~~---s~~~~l~v~----------~~~~~~~~~~~--~~~~g~~~~l~C~~~~~~p~~~-~~W~~~g~~~~-------  128 (170)
T 3ry4_A           72 QTSL---SDPVHLTVL----------FEWLVLQTPHL--EFQEGETIMLRCHSWKDKPLVK-VTFFQNGKSQK-------  128 (170)
T ss_dssp             TSBC---CCCEEEEEE----------CCSEEEECSCS--EECTTCCEEEEEEEGGGCCEEE-EEEEETTEEEE-------
T ss_pred             CCCc---eEeEEEEEE----------CCceEecCCCc--eeecCCeEEEEEECCCCCCCce-EEEEECCeEcc-------
Confidence            6433   345788888          66654433322  2778999999999954 45576 99999876321       


Q ss_pred             EeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc-ceecEEEEE
Q psy3823         275 SIQDGSTSVARYTPTSELEYGTLLCWARNEQGS-QRTPCTFHV  316 (365)
Q Consensus       275 ~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v  316 (365)
                        .......|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus       129 --~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          129 --FSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             --EESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             --ccCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence              1112345999999999999999999999997 556666665

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.85  E-value=4.6e-21  Score=159.46  Aligned_cols=174  Identities=16%  Similarity=0.211  Sum_probs=126.7

Q ss_pred             cceecCCcEEEEEEEEecCCC---CeeEEEe----------------CCeEEee---CCCCceEE-------eeceEEEe
Q psy3823         130 SVLNEGVDIYFDCHIQANPPY---KKLIWTH----------------NGITISN---NASAGRII-------TNQTLVLQ  180 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~---~~i~W~~----------------~~~~l~~---~~~~~~~~-------~~~~l~i~  180 (365)
                      ..+.+|+++.|.|.+.+.+..   ..+.|++                ++..+..   ....+...       .+.+|.|.
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~   89 (214)
T 3jz7_A           10 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVT   89 (214)
T ss_dssp             EEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEEC
T ss_pred             EEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEc
Confidence            357899999999999876632   3499988                3433321   00112222       24679999


Q ss_pred             eecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEE-eeeCCCceeEE
Q psy3823         181 SVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTW  259 (365)
Q Consensus       181 ~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~W  259 (365)
                      +++.+|+|.|+|.+.+..+... ..+.|.|.          .+|.+........ +..|+.+.|.|.+ .+.|.+. +.|
T Consensus        90 ~v~~~D~G~Y~C~~~~~~~~~~-~~~~l~V~----------~~p~~~~~~~~~~-~~~g~~v~l~C~~~~g~p~~~-v~W  156 (214)
T 3jz7_A           90 NLQLSDIGTYQCKVKKAPGVAN-KKFLLTVL----------VKPSGTRCFVDGS-EEIGNDFKLKCEPKEGSLPLQ-FEW  156 (214)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEE-EEEEEEEE----------CCCBSCEEEEESC-CBTTCCEEEEEECSBCCSSCE-EEE
T ss_pred             cCChhhCeEEEEEEEeCCCccc-cEEEEEEE----------cCCCCceeeeecc-eecCCcEEEEecCCCCCCCCE-EEE
Confidence            9999999999999999877553 67888888          7776554332222 7889999999999 8899998 999


Q ss_pred             EeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         260 AFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      ++++........... ..  ....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       157 ~~~~~~~~~~~~~~~-~~--~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          157 QKLSDSQTMPTPWLA-EM--TSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             EECSTTCCCCGGGGG-GT--TSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             EECCCCCccCcccee-cc--CCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            997653332221111 11  1226999999999999999999999999999888888743

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.85  E-value=7e-20  Score=157.38  Aligned_cols=165  Identities=15%  Similarity=0.145  Sum_probs=127.0

Q ss_pred             CeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEc
Q psy3823         117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAIN  196 (365)
Q Consensus       117 p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  196 (365)
                      |.+.+.+    ....+.+|+.+.|.|.+.+.|.+..+.|+++|..+...        +..|.|.+++.+|+|.|+|.+.+
T Consensus         2 P~i~~~p----~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~--------~~~l~i~~~~~~d~G~Y~C~~~~   69 (262)
T 3rjd_A            2 AVITLQP----PWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS--------TPSYRITSASVNDSGEYRCQRGL   69 (262)
T ss_dssp             CEEEESS----CCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC--------SSEEEESSCCGGGCEEEEEEESS
T ss_pred             CeEecCC----CcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc--------CCeEEEecCCcccCeEEEEEEec
Confidence            5555544    33468899999999999988877459999999987542        46799999999999999999987


Q ss_pred             CCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCceeE
Q psy3823         197 SQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYS  275 (365)
Q Consensus       197 ~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~~~~  275 (365)
                      ..+   +..+.|.|.          .++.......  ..+.+|+.+.|.|.+ .+.|.+. +.|+++|....        
T Consensus        70 ~~~---s~~~~l~v~----------~~~~~~~~~~--~~~~~g~~v~l~C~~~~~~p~~~-v~W~~~g~~~~--------  125 (262)
T 3rjd_A           70 SGR---SDPIQLEIH----------RGWLLLQVSS--RVFTEGEPLALRCHAWKDKLVYN-VLYYRNGKAFK--------  125 (262)
T ss_dssp             SCC---CCCEEEEEE----------CSSEEEEESC--SEEETTSCEEEEEEEGGGCCCEE-EEEEETTEEEE--------
T ss_pred             CCc---cccEEEEEe----------ccceEecCCC--eEEecCCeEEEEEEccCCCCCce-EEEEECCcccc--------
Confidence            554   345778887          5554433322  227799999999999 5677777 99999875321        


Q ss_pred             eeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         276 IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       276 ~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                       .......|.|.+++.+|+|.|+|.|.|..+..+..+.|.|..
T Consensus       126 -~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~  167 (262)
T 3rjd_A          126 -FFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE  167 (262)
T ss_dssp             -EEEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEEC
T ss_pred             -ccCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEecc
Confidence             111123499999999999999999999999888888888875

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.85  E-value=4.6e-20  Score=153.65  Aligned_cols=169  Identities=14%  Similarity=0.252  Sum_probs=120.3

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CC------------CCCceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-AP------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      .+.+.+|+.++|.|.+.+.|.+ .+.|+|..... ..            ...............|.|.+++.+|+|.|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   87 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDV-YVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYC   87 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTS-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCc-eEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEE
Confidence            6788999999999998788888 99999932110 10            1111111123445589999999999999999


Q ss_pred             EEEeCCC---CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEEeCCeEEe
Q psy3823          88 WARNEQG---NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWTHNGITIS  163 (365)
Q Consensus        88 ~a~~~~~---~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~~~~l~  163 (365)
                      .+.+..+   .....+.|.|..     .+..+|.+.+.+..    ..+.+|+.++|.|.+.+. |++..+.|+++|..+.
T Consensus        88 ~~~~~~~~~~~~~~~~~l~V~~-----~~~~~P~i~~~~~~----~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  158 (213)
T 3mj8_L           88 QSWDGTNSAWVFGSGTKVTVLG-----QPNAAPSVTLFPPS----SEELKTNQATLVCMINGFYPADVAVTWEADGTPIT  158 (213)
T ss_dssp             EEEETTTTEEEEBCCEEEEEEC-----SCCBCCEEEEECCC----HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             EeccCCcceeEEcCceEEEEeC-----CCCCCCeEEccCCC----cccccCCcEEEEEEeeceeCCCeEEEEEcCCcccC
Confidence            9999887   233667888831     11257777765532    345589999999999985 4444599999999885


Q ss_pred             eCC-------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         164 NNA-------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       164 ~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      ...       ..........|.|.++..+|+|.|+|.|.|..+
T Consensus       159 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  201 (213)
T 3mj8_L          159 QGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGN  201 (213)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTE
T ss_pred             CCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCc
Confidence            311       111222245689999999999999999999875

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.85  E-value=9.8e-21  Score=154.15  Aligned_cols=163  Identities=15%  Similarity=0.139  Sum_probs=118.0

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+|.+...+.     ..+.+|++++|.|.+.+ +.+. +.|+++|..        .......|.|.+++..|+|.|+|.
T Consensus         6 ~~~P~i~~~p~-----~~v~~G~~v~L~C~~~~-~~~~-~~W~k~g~~--------~~~~~~~L~i~~v~~~D~G~Y~C~   70 (184)
T 2gi7_A            6 LPKPSLQALPS-----SLVPLEKPVTLRCQGPP-GVDL-YRLEKLSSS--------RYQDQAVLFIPAMKRSLAGRYRCS   70 (184)
T ss_dssp             BCCCEEEEESC-----SEEETTCCEEEEEECST-TCSE-EEEEETTTC--------CEESSSEEEESSCCGGGCEEEEEE
T ss_pred             CCCCeEEeCCC-----ccccCCCcEEEEEeCCC-CCCE-EEEEECCcc--------ccCcccEEEECcCChhhCceEEEE
Confidence            45777777653     26889999999999877 5554 999998865        123457899999999999999999


Q ss_pred             EEcCCCC-CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCc
Q psy3823         194 AINSQGE-GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLT  272 (365)
Q Consensus       194 ~~~~~~~-~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~  272 (365)
                      +.|..|. ..+..+.|.|..       ...+|.+...+ . ..+..|+.++|.|.+.+.| +. +.|+++|.......  
T Consensus        71 a~n~~g~~~~s~~~~l~V~~-------~~~~p~i~~~p-~-~~v~~G~~v~l~C~~~~~~-~~-~~w~k~g~~~~~~~--  137 (184)
T 2gi7_A           71 YQNGSLWSLPSDQLELVATG-------VFAKPSLSAQP-G-PAVSSGGDVTLQCQTRYGF-DQ-FALYKEGDPAPYKN--  137 (184)
T ss_dssp             EEETTEEBCCCCCEEEEEES-------SSCCCEEEEEC-C-CSSCCTTCEEEEEECSSCC-CE-EEEEECCCCTTSCC--
T ss_pred             EEcCCCccCCCCCEEEEecC-------cCCCCEEEeCC-C-ceecCCCcEEEEEEcCCCC-cE-EEEEECCCcCccee--
Confidence            9998763 344667787751       01345554333 2 2377999999999987554 56 99999987543311  


Q ss_pred             eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         273 SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       273 ~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      ..   ......|.|.+++.+|+|.|+|.|.|..+.
T Consensus       138 ~~---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~  169 (184)
T 2gi7_A          138 PE---RWYRASFPIITVTAAHSGTYRCYSFSSRDP  169 (184)
T ss_dssp             CC---EEEEESSSEEEETTCCSEEEEEEEECTTST
T ss_pred             cC---CCceEEEEEccCCccCCeEEEEEEEeCCCC
Confidence            11   112334889999999999999999998653

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.85  E-value=2.2e-21  Score=161.42  Aligned_cols=176  Identities=15%  Similarity=0.251  Sum_probs=123.1

Q ss_pred             CceEEEEecCCcEEEEEEeCCCC----CcceEEEEeCCCcC---------------CCC-----CCceeEec---CCeEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANP----QAQYFTWAFNNSGT---------------APR-----PLTSYSIQ---DGSTS   70 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p----~~~~v~W~~~~~~~---------------l~~-----~~~~~~~~---~~~~~   70 (365)
                      .+..+.+.+|+.++|.|...+.|    .+ .+.|++++...               +..     ........   .....
T Consensus         6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   84 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKFTLSPEDQGPL-DIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDA   84 (214)
T ss_dssp             CEEEEEEETTSCEEECCBCCCCTTCCSCC-EEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBC
T ss_pred             CCceEEEecCCCEEEEEEEecCCCCCCcE-EEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcc
Confidence            34667889999999999977666    35 99999854220               110     01111111   11234


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE-EecCC
Q psy3823          71 VARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-QANPP  149 (365)
Q Consensus        71 ~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~  149 (365)
                      +|.|.+++.+|+|.|+|.+.+..+.....+.|.|         ..+|.+...+    ....+.+|+.+.|.|.+ .+.|.
T Consensus        85 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V---------~~~p~~~~~~----~~~~~~~g~~v~l~C~~~~g~p~  151 (214)
T 3jz7_A           85 SINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV---------LVKPSGTRCF----VDGSEEIGNDFKLKCEPKEGSLP  151 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE---------ECCCBSCEEE----EESCCBTTCCEEEEEECSBCCSS
T ss_pred             cEEEccCChhhCeEEEEEEEeCCCccccEEEEEE---------EcCCCCceee----eecceecCCcEEEEecCCCCCCC
Confidence            7999999999999999999998877778888888         4445432222    11246789999999999 68887


Q ss_pred             CCeeEEEeCC--eEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         150 YKKLIWTHNG--ITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       150 ~~~i~W~~~~--~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      +. +.|++++  ..+..  .......++.|.|.++..+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       152 ~~-v~W~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~  211 (214)
T 3jz7_A          152 LQ-FEWQKLSDSQTMPT--PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQ-CMLRLDVV  211 (214)
T ss_dssp             CE-EEEEECSTTCCCCG--GGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEE-EEEEECCB
T ss_pred             CE-EEEEECCCCCccCc--cceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEE-EEEEEEEe
Confidence            77 9999954  33321  111222356899999999999999999999998664 56666665

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.85  E-value=1.1e-20  Score=158.18  Aligned_cols=183  Identities=13%  Similarity=0.095  Sum_probs=125.1

Q ss_pred             ccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEE--EEEEccCCCCCCeEEE
Q psy3823           9 TDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS--VARYTPTSELEYGTLL   86 (365)
Q Consensus         9 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~   86 (365)
                      ...|.+.....  ..+.+|++++|.|.+.+ +.+ .|.|+|++.. +....... .......  .|.|.+++.+|+|.|+
T Consensus         7 ~~~P~i~~~p~--~~v~~G~~vtL~C~~~~-~~~-~~~W~k~g~~-~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~   80 (218)
T 1uct_A            7 FPMPFISAKSS--PVIPLDGSVKIQCQAIR-EAY-LTQLMIIKNS-TYREIGRR-LKFWNETDPEFVIDHMDANKAGRYQ   80 (218)
T ss_dssp             SCCCCEEESSC--SEEETTCCEEEEECCCT-TCS-EEEEEEEETT-EEEECSEE-CC----CCCEEEECSCCGGGCEEEE
T ss_pred             CCCCEEEecCC--CccCCCCCEEEEEEcCC-CCC-EEEEEECCCc-cccccccc-CCCCcceeeEEEEcccccccCEEEE
Confidence            34555544322  36789999999999765 666 9999999877 53221111 1112223  7999999999999999


Q ss_pred             EEEEeCCCCC--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEee
Q psy3823          87 CWARNEQGNQ--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN  164 (365)
Q Consensus        87 C~a~~~~~~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~  164 (365)
                      |.+.+..+..  ...+.|.|...      ..+|.+...+     ...+.+|++++|.|...+.+.+. +.|+++|..+..
T Consensus        81 C~a~n~~~~~~~s~~~~l~V~~~------~~~P~i~~~p-----~~~v~~G~~v~L~C~~~~~~~~~-~~W~k~g~~~~~  148 (218)
T 1uct_A           81 CQYRIGHYRFRYSDTLELVVTGL------YGKPFLSADR-----GLVLMPGENISLTCSSAHIPFDR-FSLAKEGELSLP  148 (218)
T ss_dssp             EEEEETTTEEEECCCEEEEEECS------SCCCEEEESS-----CSEECTTCCCEEEEECSSSCCSE-EEEEETTCSSCC
T ss_pred             EEEEcCCCceeecCCEEEEEcCc------ccCCEEEeCC-----CCccCCCCCEEEEEeCCCCCCCE-EEEEECCCcccc
Confidence            9999976532  35677877311      2356655433     23678999999999766656554 999999986643


Q ss_pred             CCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCC----CCCcccEEEEEe
Q psy3823         165 NASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG----EGGSTPFDLNIN  211 (365)
Q Consensus       165 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~s~~~~l~v~  211 (365)
                      .  .........|.|.+++.+|+|.|+|.+.+...    ...+..+.|.|.
T Consensus       149 ~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (218)
T 1uct_A          149 Q--HQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVT  197 (218)
T ss_dssp             S--EEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC
T ss_pred             c--ccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEe
Confidence            1  11112357899999999999999999997632    244567777776

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.85  E-value=1.7e-21  Score=161.58  Aligned_cols=181  Identities=20%  Similarity=0.319  Sum_probs=129.8

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCC----------CC-CceeEecCCeEEEEEEccCCCC
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAP----------RP-LTSYSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~----------~~-~~~~~~~~~~~~~l~i~~~~~~   80 (365)
                      +......+..+.+.+|+.+.|.|.+.+.|.+ .+.|++++.. +.          .. ........   ..|.|.+++.+
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~---~~L~i~~~~~~   78 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSP-RVEWKFDQGD-TTRLVCYNNKITASYEDRVTFLP---TGITFKSVTRE   78 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSE-EEEEEEEETT-EEEESEETTEECTTTTTTCEEET---TEEECSCCCTT
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCc-EEEEEEcCCc-eeEEEEecCccCccccCceEeec---cEEEEeeCCHH
Confidence            3344455667778999999999997788888 9999998765 21          00 11111122   38999999999


Q ss_pred             CCeEEEEEEEeCCCCC--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE-EecCCCCeeEEEe
Q psy3823          81 EYGTLLCWARNEQGNQ--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-QANPPYKKLIWTH  157 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~i~W~~  157 (365)
                      |+|.|+|.+.+..+..  ...+.|.|         ..+|.+....    ....+.+|+.+.|.|.+ .+.|.+. +.|++
T Consensus        79 d~G~Y~C~~~~~~g~~~~~~~~~l~V---------~~~p~~~~~~----~~~~~~~g~~~~l~C~~~~~~p~~~-v~W~~  144 (209)
T 1nbq_A           79 DTGTYTCMVSEEGGNSYGEVKVKLIV---------LVPPSKPTVN----IPSSATIGNRAVLTCSEQDGSPPSE-YTWFK  144 (209)
T ss_dssp             SCSEEEEEEEETTSSCEECCEEECCE---------EBCCCCCCCC----CBSEEETTSCEEECCCCCSCBSCCE-EEEEE
T ss_pred             HCcEEEEEEecCCCCccceEEEEEEE---------ecCCcCCCcc----cccceecCCEEEEEEeCCCCCCCce-eEEEE
Confidence            9999999999986633  36677777         3444432221    22357889999999997 7888886 99999


Q ss_pred             CCeEEeeCCCC---------ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC-CcccEEEEEe
Q psy3823         158 NGITISNNASA---------GRIITNQTLVLQSVTRHSGGLYACSAINSQGEG-GSTPFDLNIN  211 (365)
Q Consensus       158 ~~~~l~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~s~~~~l~v~  211 (365)
                      ++..+......         ........|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          145 DGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             TTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             CCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            99887643321         011135689999999999999999999999977 4455555554

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.85  E-value=4.2e-20  Score=164.62  Aligned_cols=170  Identities=16%  Similarity=0.111  Sum_probs=123.4

Q ss_pred             EEEecCCcEEEEEEeCCCC-CcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeC--CCCCcc
Q psy3823          22 YGALRNEQVLVSCTVDANP-QAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE--QGNQRT   98 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p-~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~--~~~~~~   98 (365)
                      ..+.+|+.+.|.|.+.+.| .+ .++|++++.. +..........+.   .|.|.+++.+|+|.|+|.|.|.  .+....
T Consensus       138 ~~~~~G~~v~L~C~~~g~p~~~-~i~W~k~~~~-l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~  212 (329)
T 3oq3_B          138 LGTHDKYGIDLYCGILYAKHYN-NITWYKNNQE-LIIDGTKYSQSGQ---NLIIHNPELEDSGRYDCYVHYDDVRIKNDI  212 (329)
T ss_dssp             TTSSTTTCEEEECCCCSCCCCC-EEEEEETTEE-CCCSSSSEEEETT---EEEECSCCGGGCEEEEEEEEECCTTSSSCE
T ss_pred             eEEeCCCcEEEEeccCCCCCCc-eEEEEECCcc-CCCCCceEecCCC---EEEEeecChhhCEEEEEEEEecccCCCcee
Confidence            3467899999999988899 78 9999999988 6433322222344   8999999999999999999987  655443


Q ss_pred             ----cEEEEEEeccccCCCCCCCe---EEEEcCCccCccceecCCcEEEEEEEEecC---CCCeeEEEeCCeEEeeCCCC
Q psy3823          99 ----PCTFHVVKAGECEHPVDKPS---VQIKLGRNLNASVLNEGVDIYFDCHIQANP---PYKKLIWTHNGITISNNASA  168 (365)
Q Consensus        99 ----~~~l~V~~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p---~~~~i~W~~~~~~l~~~~~~  168 (365)
                          .+.|.|         ..+|.   ..+.+    ....+.+|+.+.|.|.+.+.|   .+..+.|+++|..+......
T Consensus       213 ~~s~~~~l~V---------~~~~~~~~~~~~~----~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~  279 (329)
T 3oq3_B          213 VVSRCKILTV---------IPSQDHRFKLILD----PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFG  279 (329)
T ss_dssp             EEEEEEEEEE---------ECCCCCCEEEECC----SEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSS
T ss_pred             EEEeeEEEEE---------ECCCCCCCceecC----CeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCc
Confidence                366777         33331   11222    335688999999999999988   44258999999875332222


Q ss_pred             ceEE-------eeceEEEeeecCCCCe-EEEEEEEcCCCCCCcccEEEEE
Q psy3823         169 GRII-------TNQTLVLQSVTRHSGG-LYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       169 ~~~~-------~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      ....       ....|.|.+++.+|+| .|+|.|.|..|... ..+.|.|
T Consensus       280 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~-~~~~l~v  328 (329)
T 3oq3_B          280 VYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT-LTTTVVL  328 (329)
T ss_dssp             EEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEE-EEEEEEE
T ss_pred             eeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceE-EEEEEEe
Confidence            1111       3578999999999999 99999999988654 3444443

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.84  E-value=2.1e-20  Score=156.37  Aligned_cols=184  Identities=12%  Similarity=0.177  Sum_probs=125.1

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc-eEEeec--eEEEeeecCCCCeEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG-RIITNQ--TLVLQSVTRHSGGLY  190 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~-~~~~~~--~l~i~~~~~~d~G~Y  190 (365)
                      ..+|.+...+.     ..+.+|++|+|.|.+.+ +.+. +.|+++|..+....... ......  .|.|.+++..|+|.|
T Consensus         7 ~~~P~i~~~p~-----~~v~~G~~vtL~C~~~~-~~~~-~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   79 (218)
T 1uct_A            7 FPMPFISAKSS-----PVIPLDGSVKIQCQAIR-EAYL-TQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRY   79 (218)
T ss_dssp             SCCCCEEESSC-----SEEETTCCEEEEECCCT-TCSE-EEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEE
T ss_pred             CCCCEEEecCC-----CccCCCCCEEEEEEcCC-CCCE-EEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEE
Confidence            45777766543     36889999999999876 4444 99999887664322100 112244  899999999999999


Q ss_pred             EEEEEcCCCC-CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC
Q psy3823         191 ACSAINSQGE-GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR  269 (365)
Q Consensus       191 ~C~~~~~~~~-~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~  269 (365)
                      +|.+.|..+. ..+..+.|.|..       ...+|.+...+ .. .+.+|+.++|.|...+.|.+. +.|+++|..... 
T Consensus        80 ~C~a~n~~~~~~~s~~~~l~V~~-------~~~~P~i~~~p-~~-~v~~G~~v~L~C~~~~~~~~~-~~W~k~g~~~~~-  148 (218)
T 1uct_A           80 QCQYRIGHYRFRYSDTLELVVTG-------LYGKPFLSADR-GL-VLMPGENISLTCSSAHIPFDR-FSLAKEGELSLP-  148 (218)
T ss_dssp             EEEEEETTTEEEECCCEEEEEEC-------SSCCCEEEESS-CS-EECTTCCCEEEEECSSSCCSE-EEEEETTCSSCC-
T ss_pred             EEEEEcCCCceeecCCEEEEEcC-------cccCCEEEeCC-CC-ccCCCCCEEEEEeCCCCCCCE-EEEEECCCcccc-
Confidence            9999997652 234567777761       01245554333 22 378999999999776677777 999999875432 


Q ss_pred             CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc-----cceecEEEEEEcC
Q psy3823         270 PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG-----SQRTPCTFHVVKA  319 (365)
Q Consensus       270 ~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~  319 (365)
                       . ..  .......|.|.+++.+|+|.|+|.|.|..+     ..+..+.|.|...
T Consensus       149 -~-~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          149 -Q-HQ--SGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             -S-EE--ECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             -c-cc--CCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence             1 11  223345799999999999999999998642     2345666666543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.84  E-value=3.5e-20  Score=163.45  Aligned_cols=190  Identities=13%  Similarity=0.112  Sum_probs=129.8

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCceeEe--cCCeEEEEEEccCCCCCCeEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSYSI--QDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      .|......+....+.+|+.+.|.|.+. +.|.+ .+.|++++.. +.........  .......|.|.+++.+|+|.|+|
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~~~~-i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  183 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKE-IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTF  183 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSC-EEEEEETTEE-ECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEE
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCC-EEEEEECCEE-CeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEE
Confidence            444333233477789999999999977 88998 9999999988 6654433222  22445679999999999999999


Q ss_pred             EEEeCCCCCcccEEEEEEecc--------c----cCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEE
Q psy3823          88 WARNEQGNQRTPCTFHVVKAG--------E----CEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIW  155 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V~~~~--------~----~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W  155 (365)
                      .+.+..  ......+.+....        .    ......+|.+....     ...+.+|+.+.|.|.+.+.|.+..+.|
T Consensus       184 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~~~v~~G~~~~l~C~~~~~p~~~~v~W  256 (312)
T 2y23_A          184 QLQDGK--ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-----SWEVTGECNVLLKCKVANIKKETHIVW  256 (312)
T ss_dssp             EEESSS--CEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-----EEEEETTTEEEEEEEEESCCSSCEEEE
T ss_pred             EEEeCC--ceEEEEEEEcchhhhhhcccccccccchhhccCCceeecc-----eEEEeCCCEEEEEEEEcCCCCCCEEEE
Confidence            997533  2233333331000        0    00001135433211     136789999999999999888845999


Q ss_pred             EeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         156 THNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       156 ~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      ++++..+..............|.|.+++.+|+|.|+|.|.|..|... ..+.|.+
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~i  310 (312)
T 2y23_A          257 YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDK-SRLKLVD  310 (312)
T ss_dssp             EETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEE-EEEEECS
T ss_pred             eeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCcee-eeeEEEe
Confidence            99999997544433333357999999999999999999999999765 4455543

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.84  E-value=1.1e-19  Score=150.04  Aligned_cols=171  Identities=16%  Similarity=0.183  Sum_probs=116.1

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC-----C
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQG-----N   95 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~-----~   95 (365)
                      ..+.+|++++|.|.+. .|.+ .+.|+|++.. +...... ..........|.|.+++.+|+|.|+|.+.+...     .
T Consensus        17 ~~v~~G~~v~L~C~~~-~~~~-~~~w~k~g~~-~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~   93 (201)
T 1nkr_A           17 PLVKSEETVILQCWSD-VMFE-HFLLHREGMF-NDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSA   93 (201)
T ss_dssp             SEEETTCCEEEEEEES-SCCS-EEEEEEESSS-CEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCC
T ss_pred             CccCCCCcEEEEEecc-CCCC-EEEEEECCCc-CCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccC
Confidence            5578999999999976 4677 9999999886 4321110 111223445899999999999999999986432     2


Q ss_pred             CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE---
Q psy3823          96 QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII---  172 (365)
Q Consensus        96 ~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~---  172 (365)
                      ....+.|.|...      ..+|.+...+.     ..+.+|+.++|.|.+.+ +.+. +.|+++|..+..........   
T Consensus        94 ~s~~~~l~V~~~------~~~p~i~~~p~-----~~v~~G~~v~L~C~~~~-~~~~-~~w~k~g~~~~~~~~~~~~~~~~  160 (201)
T 1nkr_A           94 PSDPLDIVIIGL------YEKPSLSAQPG-----PTVLAGENVTLSCSSRS-SYDM-YHLSREGEAHERRLPAGPKVNGT  160 (201)
T ss_dssp             CCCCEEEEEECS------SCCCEEEEESC-----SEECTTCEEEEEEEESS-CCSE-EEEEETTCSSCEEEECEEEETTE
T ss_pred             CCCCEEEEeecc------CCCCceecCCC-----CccCCCCeEEEEEeCCC-CCce-EEEEECCcccCcccccccccCCc
Confidence            236677887321      23577666542     25789999999999876 4444 99999987654311111111   


Q ss_pred             eeceEEEeeecCCCCeEEEEEEEcCC----CCCCcccEEEEE
Q psy3823         173 TNQTLVLQSVTRHSGGLYACSAINSQ----GEGGSTPFDLNI  210 (365)
Q Consensus       173 ~~~~l~i~~~~~~d~G~Y~C~~~~~~----~~~~s~~~~l~v  210 (365)
                      ....|.|.+++  |+|.|+|.+.+..    ....+..+.|.|
T Consensus       161 ~~~~L~i~~v~--d~G~Y~C~a~~~~~~~~~s~~S~~~~l~V  200 (201)
T 1nkr_A          161 FQADFPLGPAT--HGGTYRCFGSFHDSPYEWSKSSDPLLVSV  200 (201)
T ss_dssp             EEEEEEEEECC--SCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             eEEEEEeCCcC--CCeeEEEEEEcCCCCCcCCCCCCCEEEEe
Confidence            25689999998  9999999998653    223345555554

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.84  E-value=1.3e-20  Score=160.88  Aligned_cols=175  Identities=15%  Similarity=0.213  Sum_probs=121.0

Q ss_pred             CceEEEEecCCcEEEEEEeCC---CCCcceEEEEeCCCcCCC-----C------------------------CCceeEec
Q psy3823          18 QQRIYGALRNEQVLVSCTVDA---NPQAQYFTWAFNNSGTAP-----R------------------------PLTSYSIQ   65 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~---~p~~~~v~W~~~~~~~l~-----~------------------------~~~~~~~~   65 (365)
                      .+..+.+.+|+.++|.|.+.+   .|.+ .+.|++++.. ..     .                        ........
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   85 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPP-VISWLKGASP-DRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA   85 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCC-EEEEEEEEET-TEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECS
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCce-EEEEEeCCCC-CccEEEEeeccccccccccccccccccccCCCcCceEEec
Confidence            445678899999999999655   6777 9999998754 21     0                        00000001


Q ss_pred             CCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-----ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEE
Q psy3823          66 DGSTSVARYTPTSELEYGTLLCWARNEQGNQR-----TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYF  140 (365)
Q Consensus        66 ~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-----~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l  140 (365)
                      ......|.|.+++.+|+|.|+|.+.+..+...     ..+.|.|...      ..+|.+.+...   ....+.+|+.+.|
T Consensus        86 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~------~~~~~~~~~~~---~~~~v~~g~~v~L  156 (250)
T 2fbo_J           86 NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH------TPSNNVHVSTA---EVVQVDEGNDITM  156 (250)
T ss_dssp             CTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT------SCCSCCEECCC---SEEECCTTCCEEE
T ss_pred             cCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc------CCCCeEEEecC---ceEEecCCCcEEE
Confidence            10123799999999999999999998777543     3777888211      11344444332   2345678999999


Q ss_pred             EEEEEecCCCCeeEEEeCCeEEeeCCC----------------------CceEE-eeceEEEeeecCCCCeEEEEEEEcC
Q psy3823         141 DCHIQANPPYKKLIWTHNGITISNNAS----------------------AGRII-TNQTLVLQSVTRHSGGLYACSAINS  197 (365)
Q Consensus       141 ~C~~~~~p~~~~i~W~~~~~~l~~~~~----------------------~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~  197 (365)
                      .|.+.+.|.|. +.|++++..+.....                      ..... ....|.|.+++.+|+|.|+|.|.|.
T Consensus       157 ~C~~~g~p~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~  235 (250)
T 2fbo_J          157 TCPCTDCANAN-VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATG  235 (250)
T ss_dssp             CCCEESCTTCE-EEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESS
T ss_pred             EEEecCCCCCe-eEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCC
Confidence            99999988885 999999876643211                      11111 2368999999999999999999998


Q ss_pred             CCCCCcc
Q psy3823         198 QGEGGST  204 (365)
Q Consensus       198 ~~~~~s~  204 (365)
                      .|...+.
T Consensus       236 ~g~~g~~  242 (250)
T 2fbo_J          236 QGELDAD  242 (250)
T ss_dssp             SSGGGEE
T ss_pred             ccccCcc
Confidence            7754433

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.84  E-value=2.9e-20  Score=162.43  Aligned_cols=193  Identities=15%  Similarity=0.105  Sum_probs=135.6

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCC--cceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCC
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ--AQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~--~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      +.+.+...|......+....+.+|+.+.|.|.+.+ |.  + .++|++++...+..........++   .|.|.+++.+|
T Consensus        81 ~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d  155 (292)
T 4dkd_C           81 IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEA-GVSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAKFIQ  155 (292)
T ss_dssp             ECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGS-SEEEEEGGGCCCCSSCCEECCSSS---CCEETTCCGGG
T ss_pred             EEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcce-eEEEEecCCCccccCCcccccCCc---eEEECCCCHHH
Confidence            34445555543333445677899999999999766 55  5 899999854425444333333333   49999999999


Q ss_pred             CeEEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCe
Q psy3823          82 YGTLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGI  160 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~  160 (365)
                      +|.|+|.+.+..+... ..+.|.|...     +..+|.+...+..    ..+.+|+.+.|.|.+.+.|++..+.|++++.
T Consensus       156 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~-----~~~~p~i~~~~~~----~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~  226 (292)
T 4dkd_C          156 SQDYQCSALMGGRKVMSISIRLKVQKV-----IPGPPALTLVPAE----LVRIRGEAAQIVCSASSVDVNFDVFLQHNNT  226 (292)
T ss_dssp             CSEEEEEECSTTSCEECCCEEEEEECC-----CCSSCEEEEESSC----BCCCSSSCEEEEEEEEESSSCCEEECCBSSC
T ss_pred             CeEEEEEEEeCCCceeEEEEEEEEeCC-----CCCCCeEEccCCc----eeEecCCCEEEEEEecCCCCceEEEEeCCCc
Confidence            9999999998766554 5888888310     0127777766533    3467999999999999888766688888887


Q ss_pred             EEeeCCC----CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         161 TISNNAS----AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       161 ~l~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      .+.....    .........|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~  280 (292)
T 4dkd_C          227 KLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHS-TSMFFRVV  280 (292)
T ss_dssp             CCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEE-EEEEECC-
T ss_pred             ccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCce-eEEEEEEe
Confidence            6542211    11122346899999999999999999999998754 56667666

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=4e-20  Score=151.06  Aligned_cols=170  Identities=15%  Similarity=0.153  Sum_probs=119.2

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC--cccE
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ--RTPC  100 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~--~~~~  100 (365)
                      .+.+|++++|.|.+.+ +.. .+.|+|++.. +....... ........|.|.+++.+|+|.|+|.+.+..+..  ...+
T Consensus        14 ~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~-~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~   89 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY-GAV-EYQLHFEGSL-FAVDRPKP-PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL   89 (188)
T ss_dssp             EEETTCCEEEEEECCT-TCC-EEEEEETTEE-EEEECCSS-CTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCE
T ss_pred             cCCCCCCEEEEEecCC-CCC-EEEEEECCCc-cccccccc-CCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCce
Confidence            6789999999999764 345 8999999876 43110000 122344589999999999999999998865432  3667


Q ss_pred             EEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEe
Q psy3823         101 TFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQ  180 (365)
Q Consensus       101 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~  180 (365)
                      .|.|...      ..+|.+...+     ...+.+|+.++|.|.+.+. ++ .+.|+++|..+...  ......+..|.|.
T Consensus        90 ~l~V~~~------~~~p~i~~~p-----~~~v~~G~~v~L~C~~~~~-~~-~~~w~k~g~~~~~~--~~~~~~~~~L~I~  154 (188)
T 1oll_A           90 DLVVTEM------YDTPTLSVHP-----GPEVISGEKVTFYCRLDTA-TS-MFLLLKEGRSSHVQ--RGYGKVQAEFPLG  154 (188)
T ss_dssp             EEEEESC------SCCCEEEEES-----CSEEETTCEEEEEEECSSS-CS-EEEEEEESSSCEEE--EEECSSEEEEEEE
T ss_pred             EEEeccc------CCCCeEEECC-----CCccccCCEEEEEEEcCCC-CC-EEEEEECCcccccc--ccCCCceeEEEEC
Confidence            8887311      2366665543     2357899999999997653 34 49999998766431  0111235789999


Q ss_pred             eecCCCCeEEEEEEEcCCC--CCCcccEEEEEe
Q psy3823         181 SVTRHSGGLYACSAINSQG--EGGSTPFDLNIN  211 (365)
Q Consensus       181 ~~~~~d~G~Y~C~~~~~~~--~~~s~~~~l~v~  211 (365)
                      +++.+|+|.|+|.+.|...  ...+..+.|.|.
T Consensus       155 ~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          155 PVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             ECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             CCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            9999999999999997642  344566777764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=166.25  Aligned_cols=180  Identities=13%  Similarity=0.218  Sum_probs=130.7

Q ss_pred             ecCCcEEEEEEeCC----------CCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          25 LRNEQVLVSCTVDA----------NPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        25 ~~G~~~~l~C~~~~----------~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      .+|+.+.|.|...+          .|.+ .++|++++.. +...........+....|.|.+++.+|.|.|+|.|.|..+
T Consensus       111 ~~g~~~~l~c~~~~~~l~c~~~~~~p~~-~i~W~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  188 (317)
T 2y25_A          111 LSATDLKIQSTAEGIQLYSFVTYYVEDL-KVNWSHNGSA-IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKT  188 (317)
T ss_dssp             TCBCCCEEEECSSEEEEEEEBSSCCSSC-EEEEEESSSB-CCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred             ccCCCeEEEeeccccEEEEEeccCCCCc-EEEEEECCEE-CCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCc
Confidence            46788888887655          6888 9999999998 7665554444555566899999999999999999999887


Q ss_pred             CCcccEEEEEEeccc-----------cCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEe
Q psy3823          95 NQRTPCTFHVVKAGE-----------CEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITIS  163 (365)
Q Consensus        95 ~~~~~~~l~V~~~~~-----------~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~  163 (365)
                      .....+.|.|.....           ...+..+|.+...+.   ....+.+|+.+.|.|.+.|+|.+. +.|+++|..+.
T Consensus       189 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~v~~g~~~~l~C~~~g~p~p~-i~W~~~g~~~~  264 (317)
T 2y25_A          189 GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP---DVVTIQEGKALNLTCNVWGDPPPE-VSWLKNEKALA  264 (317)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCC---SEEEEETTSBBCEEEEEECSSCCE-EEEEESSSEEC
T ss_pred             eEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCC---ccEEEEcCCEEEEEEEEecCCCCE-EEEEECCEeCC
Confidence            766666665420000           000012344333222   234678999999999999999887 99999999986


Q ss_pred             eCCCCceEEe---eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         164 NNASAGRIIT---NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       164 ~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      ..........   ...|.|.+++..|+|.|+|.|.|..|... ..+.|.|.
T Consensus       265 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~  314 (317)
T 2y25_A          265 SDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSET-SDFTVSVF  314 (317)
T ss_dssp             CCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEE-EEEEEEEE
Confidence            5433222212   13899999999999999999999998764 66777776

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.84  E-value=4.7e-20  Score=163.04  Aligned_cols=177  Identities=14%  Similarity=0.159  Sum_probs=129.1

Q ss_pred             EEEEecCCcEEEEEEe------CCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEE-eCC
Q psy3823          21 IYGALRNEQVLVSCTV------DANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR-NEQ   93 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~------~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-~~~   93 (365)
                      ...+.+|+.+.|.|.+      .++|.+ .++|++++.. +..........++   .|.|.+++.+|+|.|+|.|. +..
T Consensus       112 ~~~~~~g~~v~l~C~~~~~~~~~g~p~~-~i~W~k~~~~-l~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~n~~  186 (315)
T 1itb_B          112 KQKLPVAGDGGLVCPYMEFFKNENNELP-KLQWYKDCKP-LLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYL  186 (315)
T ss_dssp             EEEEETTSCEEEECSSCTTTCTTTTCCC-CCEEEETTEE-CCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEET
T ss_pred             ceEEecCCCeEEEEecccccccCCCCCC-EEEEEECCEE-CCCccceEeecCc---eEEEEeceehhCcEEEEEEEcCCC
Confidence            4567899999999997      889999 9999999988 6543333333444   79999999999999999999 677


Q ss_pred             CCCc---ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCce
Q psy3823          94 GNQR---TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR  170 (365)
Q Consensus        94 ~~~~---~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~  170 (365)
                      +...   ..+.+.+.....    ..+|.+...+.   ....+.+|+.+.|.|.+.|.|.+. +.|+++|..+........
T Consensus       187 g~~~~~~~~~~~~~~~~~~----~~~P~~~~~~~---~~~~~~~g~~v~l~C~~~g~P~p~-i~W~~~g~~i~~~~~~~~  258 (315)
T 1itb_B          187 GKQYPITRVIEFITLEENK----PTRPVIVSPAN---ETMEVDLGSQIQLICNVTGQLSDI-AYWKWNGSVIDEDDPVLG  258 (315)
T ss_dssp             TEEEEEEEEEEEEEECCCC----CCCCEECSCCS---EEEECCSSSCEEEEEEEEECTTSE-EEEEETTEECCTTCSSEE
T ss_pred             CcEEEEEEEEEEEEecCCC----CCCCEEecCCC---CcEEEeCCCcEEEEEEEecCCCCe-eEEEECCEECCccccccc
Confidence            7652   444454421111    24555432221   113578999999999999988886 999999998875432111


Q ss_pred             --------------EEeeceEEEeeecCCC-CeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         171 --------------IITNQTLVLQSVTRHS-GGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       171 --------------~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                                    ......|.|.++..+| +|.|+|.|.|..|... ..+.|.|.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~-~~~~l~v~  313 (315)
T 1itb_B          259 EDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDA-AYIQLIYP  313 (315)
T ss_dssp             EEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEE-EEEEEECC
T ss_pred             ccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCcee-EEEEEEec
Confidence                          1123489999999999 9999999999999765 55555553

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.83  E-value=1.4e-19  Score=150.58  Aligned_cols=177  Identities=11%  Similarity=0.163  Sum_probs=120.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcc--eEEEEeCCCcCCCCCCcee----------------E-----ecCCeEEEEEEc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQ--YFTWAFNNSGTAPRPLTSY----------------S-----IQDGSTSVARYT   75 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~--~v~W~~~~~~~l~~~~~~~----------------~-----~~~~~~~~l~i~   75 (365)
                      +..+.+.+|++++|.|.+.+.|.+.  .++|+|++.. +.......                .     .......+|.|.
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAG-EGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSS-SCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCC-CCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            4567889999999999987777652  5899998865 43211000                0     001122369999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeE
Q psy3823          76 PTSELEYGTLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLI  154 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~  154 (365)
                      +++.+|+|.|.|.+.+..+... ....+.+         ..++.......   ....+.+|+.+.+.|.+.+.|++. |.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~---~~~~~~~~~~~~~~c~~~g~p~p~-i~  151 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRV---------LVPPLPSLNPG---PALEEGQGLTLAASCTAEGSPAPS-VT  151 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEE---------EBCCCCEEEEC---SCEETTCCSEEEEEEEEEEBSCCE-EE
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEE---------eeeccceeeee---eeeeeeeccccceeeeccCCcCce-EE
Confidence            9999999999999987665444 3344444         22222222222   223566789999999999998887 99


Q ss_pred             EEeCCeEEeeCCC---CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         155 WTHNGITISNNAS---AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       155 W~~~~~~l~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      |++++..+.....   .......+.|.|.++..+|+|.|+|.|.|+.|... ..+.+.+
T Consensus       152 W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~-~~~t~~v  209 (218)
T 4frw_A          152 WDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQD-QRITHIL  209 (218)
T ss_dssp             EEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC-EEEEEEC
T ss_pred             EEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeE-EEEEEEE
Confidence            9999877653221   11222345799999999999999999999988654 3344443

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.83  E-value=2.2e-19  Score=145.93  Aligned_cols=166  Identities=15%  Similarity=0.273  Sum_probs=118.5

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcc-eEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~-~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      ...+.+|+.++|.|.+.+.|.+. .+.|++++.. +......     .....|.|.  +.+|+|.|+|.+.+   .....
T Consensus         7 ~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~-l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n---~~~~~   75 (184)
T 3b5h_A            7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVV-LKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLP---EPMGT   75 (184)
T ss_dssp             EEEEEETTEEEEEEEEESCSSCCCEEEEESSSEE-EECTTCC-----CSEEEEEEC--GGGCCEEEEEEEES---TTSCE
T ss_pred             EEEEecCCCEEEEEECCCCCCCceEEEEEeCCEE-eeccccc-----CCcEEEEEe--chhhCeEEEEEEEC---CcCcE
Confidence            35578999999999965555442 8999999987 6543321     112356665  68899999999997   23367


Q ss_pred             EEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe---CCeEEeeCC--CCceEEe-
Q psy3823         100 CTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH---NGITISNNA--SAGRIIT-  173 (365)
Q Consensus       100 ~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~---~~~~l~~~~--~~~~~~~-  173 (365)
                      +.|.|         ..+|.+...+    ....+.+|+.+.|.|.+.+.|++..+.|++   ++..+....  ....... 
T Consensus        76 ~~l~V---------~~~P~~~~~~----~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  142 (184)
T 3b5h_A           76 ANIQL---------HGPPRVKAVK----SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS  142 (184)
T ss_dssp             EEEEE---------CCSCCCEESC----SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE
T ss_pred             EEEEE---------ecCCceeecC----CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEec
Confidence            88888         6778766544    234578899999999999988434499999   555443211  1112222 


Q ss_pred             --eceEEEeeec-CCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         174 --NQTLVLQSVT-RHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       174 --~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                        ...|.|.+++ ..|+|.|+|.|.|..|... ..+.|.|.
T Consensus       143 ~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~  182 (184)
T 3b5h_A          143 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQ-AIITLRVR  182 (184)
T ss_dssp             TTEEEEEECSCCTTTSSEEEEEEEEETTEEEE-EEEEEEEC
T ss_pred             CCeeEEEEeeccccccCceEEEEEEeCCCcce-EEEEEEEe
Confidence              2489999999 9999999999999998755 45666664

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.83  E-value=2.8e-20  Score=165.60  Aligned_cols=188  Identities=22%  Similarity=0.369  Sum_probs=140.3

Q ss_pred             EEeecccCCeEee-CCceEEEEecC---CcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCC---eEEEEEEc
Q psy3823           4 LIFNSTDEPVCKQ-SQQRIYGALRN---EQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYT   75 (365)
Q Consensus         4 ~~~~~~~~p~~~~-~~~~~~~v~~G---~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~---~~~~l~i~   75 (365)
                      +.+.+...|.... .....+.+.+|   +.+.|.|. ..+.|.+ .++|++++.. ...... ....++   ..+.|.|.
T Consensus       123 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~-~i~W~~~~~~-~~~~~~-~~~~~~~~~~~~~L~i~  199 (331)
T 3u83_A          123 LNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPS-VVSWETRLKG-EAEYQE-IRNPNGTVTVISRYRLV  199 (331)
T ss_dssp             EEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCC-EEEEEESSCC-EEEEEE-EECTTSCEEEEEEEEEC
T ss_pred             EEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCc-eEEEEcCCCC-ccccce-eECCCCcEEEEEEEEEE
Confidence            3455556665533 23455667888   88999998 8889999 9999997443 211110 111222   22468999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEE
Q psy3823          76 PTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIW  155 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W  155 (365)
                      ++..+|.|.|+|.|.|..+.....+.|.|         ..+|.+.+.+..   ...+.+|+.+.|.|.+.++|.+..+.|
T Consensus       200 ~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V---------~~~P~~~~~~~~---~~~~~~g~~~~l~C~~~g~p~p~~i~W  267 (331)
T 3u83_A          200 PSREAHQQSLACIVNYHMDRFKESLTLNV---------QYEPEVTIEGFD---GNWYLQRMDVKLTCKADANPPATEYHW  267 (331)
T ss_dssp             CCGGGTTCEEEEEEEETTEEEEEEEECCE---------EEEEEEEEECCC---SCCBTTCCCEEEEEEEEEESCCCEEEE
T ss_pred             eccccCCCEEEEEEecCCCcceeeEEEEE---------ecCCeEEEecCC---CceEeCCCeEEEEEeCcCCCCCCEEEE
Confidence            99999999999999999887778888888         567776655432   235788999999999999998877999


Q ss_pred             EeCCeEEeeCCCCceEEeeceEEEe-eecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         156 THNGITISNNASAGRIITNQTLVLQ-SVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       156 ~~~~~~l~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      ++++..+..    .....+.+|.|. ++..+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       268 ~~~~~~~~~----~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~  319 (331)
T 3u83_A          268 TTLNGSLPK----GVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRS-GQVEVNIT  319 (331)
T ss_dssp             EETTBSCCT----TEEEETTEEEECSCCCGGGCEEEEEEEEETTEEEE-EEEEECCB
T ss_pred             EECCCcccc----cceecCcEEEEeCCCccccCeEEEEEEEeccccce-EEEEEEEe
Confidence            999887743    234456789999 9999999999999999998764 67777776

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.83  E-value=5.7e-20  Score=154.65  Aligned_cols=173  Identities=15%  Similarity=0.224  Sum_probs=112.6

Q ss_pred             cceecCCcEEEEEEEEecCCC--CeeEEEeCCeEE-----------eeCC----CCceEE-------eeceEEEeeecCC
Q psy3823         130 SVLNEGVDIYFDCHIQANPPY--KKLIWTHNGITI-----------SNNA----SAGRII-------TNQTLVLQSVTRH  185 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~--~~i~W~~~~~~l-----------~~~~----~~~~~~-------~~~~l~i~~~~~~  185 (365)
                      ..+.+|++++|.|.+.+.+.+  ..|.|++++...           ....    ..+...       .+.+|.|.+++..
T Consensus        14 V~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~   93 (226)
T 4f80_A           14 ILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTAS   93 (226)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchH
Confidence            457899999999999865543  358999865321           1100    011111       1457999999999


Q ss_pred             CCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCCceeEEEeCCC
Q psy3823         186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNS  264 (365)
Q Consensus       186 d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~  264 (365)
                      |+|.|+|.+.|..+... ..+.+.+.            +....... ...+..|+.+.|.|.+.+ .|.|. +.|+++++
T Consensus        94 D~G~Y~C~a~n~~~~~~-~~v~~~~~------------~~~~~~~~-~~~~~~g~~v~l~c~~~g~~P~p~-i~W~k~~~  158 (226)
T 4f80_A           94 DSGKYLCYFQDGDFYEK-ALVELKVA------------ALGSDLHV-DVKGYKDGGIHLECRSTGWYPQPQ-IQWSNNKG  158 (226)
T ss_dssp             GCEEEEEEEEETTEEEE-EEEEEEEE------------BCCCCCEE-EEEEEETTEEEEEEEEEEEBSCCE-EEEECTTS
T ss_pred             HCeeEEEEEECCCcEEE-EEEEEeec------------cceecccc-eeeeccCCceeeEEEeccCCCCCE-EEEEECCc
Confidence            99999999999776443 33333333            21111122 223778999999999988 58888 99998765


Q ss_pred             CCCCCCCce-eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         265 DTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       265 ~~~~~~~~~-~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      ......... ....++....+.+..++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       159 ~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          159 ENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             CBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred             eEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence            333222222 22345555556666778899999999999999999888888764

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.83  E-value=1.9e-20  Score=162.32  Aligned_cols=259  Identities=15%  Similarity=0.166  Sum_probs=108.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      +....|.+|+++.|.|.+. .+.+..+.|.-.-......      ..+.....|.+.+++.+  |.|+|.+.........
T Consensus         6 P~~~~V~~G~sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~------~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~   76 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELL------LPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTA   76 (291)
T ss_dssp             CSEEEECTTCEEEEEEEEC-CSSCSEEEEECSSCCCCCC------CSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEE
T ss_pred             CCccEEcCCCeEEEEEeCC-CCCCccceEEecCCCcccc------cCCCceEEEEEEecccC--CeEEEEEEcCCccEEE
Confidence            3456789999999999975 4555258886421110110      01222235788888753  4699999754433347


Q ss_pred             cEEEEEEeccccCCCCCCCe-EEEEcCCccCccceecCCcEEEEEEEEecCCCC--eeEEEeCCeEEeeCCCCceEEeec
Q psy3823          99 PCTFHVVKAGECEHPVDKPS-VQIKLGRNLNASVLNEGVDIYFDCHIQANPPYK--KLIWTHNGITISNNASAGRIITNQ  175 (365)
Q Consensus        99 ~~~l~V~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~--~i~W~~~~~~l~~~~~~~~~~~~~  175 (365)
                      .+.|.|         +.+|. +.+.+.    ...+.+|+.++|.|.+.+.++..  .|+|++++..+...... ......
T Consensus        77 ~v~l~V---------~~~P~~v~I~~~----~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~-~~~~~~  142 (291)
T 1mq8_A           77 KTFLTV---------YWTPERVELAPL----PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-GEPAEV  142 (291)
T ss_dssp             ECEEEE---------CBCCSCCCBCCC----CSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC-BTTEEE
T ss_pred             EEEEEE---------ecCCCCCEEecC----CccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC-CCCceE
Confidence            778888         55554 223221    13478999999999999755443  48999999888643211 111234


Q ss_pred             eEEEeeecCCCCeEEEEEEEcCCCC-------CCcccEEEEEeeeeecccccCCCCceecC-ccceeeeecCceEEEEEE
Q psy3823         176 TLVLQSVTRHSGGLYACSAINSQGE-------GGSTPFDLNINKMVNLIFNSIDEPVCKQS-QQRIYGALRNEQVLVSCT  247 (365)
Q Consensus       176 ~l~i~~~~~~d~G~Y~C~~~~~~~~-------~~s~~~~l~v~~~~~~~~~~~~~p~~~~~-~~~~~~~~~g~~~~l~C~  247 (365)
                      ++.+.....++.+.|+|+|.+..+.       ..+....|.|.          ++|..... .... .+.+|+.++|.|.
T Consensus       143 ~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~----------~~P~~~~~~~~p~-~l~eG~~v~l~C~  211 (291)
T 1mq8_A          143 TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTF----------VLPATPPQLVSPR-VLEVDTQGTVVCS  211 (291)
T ss_dssp             EEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------------------------
T ss_pred             EEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEE----------ecCCCCceecCCc-CccCCCeEEEEEE
Confidence            6777777778888999999987542       23456677887          66533211 1111 3789999999999


Q ss_pred             EeeeCCC-c-eeEEEeCCCCCCCCCCceeEeeCCCE--EEEEEcCCCc--ccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         248 VDANPQA-Q-YFTWAFNNSDTAPRPLTSYSIQDGST--SVARYTPTSE--LEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       248 ~~~~p~~-~-~~~W~~~~~~~~~~~~~~~~~~~~~~--s~l~i~~v~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      +.|.|++ . .+.|+++|.......     ..++..  +.+.+ .+..  ++.+.|+|.|.|.....+....|.|.
T Consensus       212 ~~g~~P~~~~~v~w~~~g~~l~~~~-----~~~g~~~~~~~~~-~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~  281 (291)
T 1mq8_A          212 LDGLFPVSEAQVHLALGDQRLNPTV-----TYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIY  281 (291)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             cCCCCCCcccEEEEEECCEecCcee-----eecCCeEEEEEec-ceeEcCCCCEEEEEEEEeCCcceEEEEEEEEE
Confidence            9997554 2 499999887543211     112221  11211 1223  33677889998865555566566654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.83  E-value=1.6e-21  Score=172.08  Aligned_cols=172  Identities=18%  Similarity=0.238  Sum_probs=126.6

Q ss_pred             EEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEe-cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc--
Q psy3823          22 YGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGNQR--   97 (365)
Q Consensus        22 ~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~--   97 (365)
                      ....+|+.+.|.|. ..+.|.+ .++|++++.. +......... .....+.|.|.++..+|.|.|+|.|.|..+...  
T Consensus       124 ~~~~~~~~~~l~C~~~~g~P~~-~i~W~~~~~~-~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  201 (308)
T 4fom_A          124 LIDGGNETVAAICIAATGKPVA-HIDWEGDLGE-MESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIR  201 (308)
T ss_dssp             CCTTCSCEEEEEEEEEEEBSCC-EEEECCCSSB-CCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEE
T ss_pred             eEEcCCceEEEEEEecCCcCCc-eEEEEECCcc-cccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceE
Confidence            34457899999998 6788999 9999999987 5432211111 112345799999999999999999999887765  


Q ss_pred             ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceE
Q psy3823          98 TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTL  177 (365)
Q Consensus        98 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l  177 (365)
                      ..+.|.|         ..+|.+.+.+.   ....+.+|+.++|.|.+.|+|+|..+.|++++..+....   ....+..|
T Consensus       202 ~~~~l~V---------~~~P~~~~~~~---~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~---~~~~~~~l  266 (308)
T 4fom_A          202 YSFILDI---------QYAPEVSVTGY---DGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGL---LASDNTLH  266 (308)
T ss_dssp             EEEECCC---------CEEEEECCBCC---CSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSC---BCSTTEEE
T ss_pred             EeEEEEE---------ecCCeeEEccc---ceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcE---EEcCCeEE
Confidence            4455555         55666544433   223566789999999999999886699999988775321   12223456


Q ss_pred             EEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         178 VLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       178 ~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      .|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       267 ~i~~v~~~d~G~Y~C~A~N~~G~~~-~~~~l~V~  299 (308)
T 4fom_A          267 FVHPLTFNYSGVYICKVTNSLGQRS-DQKVIYIS  299 (308)
T ss_dssp             CCSCCCSCCCSEEEEEEEETTEEEE-EEEECCEE
T ss_pred             EECCCChhhCEEEEEEEEeCCCcEE-EEEEEEEE
Confidence            6788999999999999999999765 67788888

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.83  E-value=8.7e-20  Score=155.70  Aligned_cols=173  Identities=14%  Similarity=0.196  Sum_probs=117.3

Q ss_pred             cceecCCcEEEEEEEEe---cCCCCeeEEEeCCeEE-----ee-----------------------CCCCceEEe---ec
Q psy3823         130 SVLNEGVDIYFDCHIQA---NPPYKKLIWTHNGITI-----SN-----------------------NASAGRIIT---NQ  175 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~---~p~~~~i~W~~~~~~l-----~~-----------------------~~~~~~~~~---~~  175 (365)
                      ..+.+|+++.|.|.+.+   .+.+. +.|++++...     ..                       ....+....   +.
T Consensus        12 v~v~~G~~v~L~C~~~~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   90 (250)
T 2fbo_J           12 VEVHAGGTVELPCSYQLANDTQPPV-ISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAP   90 (250)
T ss_dssp             EEECTTSCEEECCEEEECSCCSCCE-EEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSC
T ss_pred             eEEecCCeEEEEEEeEcCCCCCceE-EEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcc
Confidence            46789999999999987   66666 9999976432     00                       001111111   24


Q ss_pred             eEEEeeecCCCCeEEEEEEEcCCCCCC----cccEEEEEeeeeecccccCCC---CceecCccceeeeecCceEEEEEEE
Q psy3823         176 TLVLQSVTRHSGGLYACSAINSQGEGG----STPFDLNINKMVNLIFNSIDE---PVCKQSQQRIYGALRNEQVLVSCTV  248 (365)
Q Consensus       176 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~----s~~~~l~v~~~~~~~~~~~~~---p~~~~~~~~~~~~~~g~~~~l~C~~  248 (365)
                      +|.|.+++.+|+|.|+|.+.+..+...    +..+.|.|.          ..   |.+.........+.+|+.+.|.|.+
T Consensus        91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~----------~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~  160 (250)
T 2fbo_J           91 TLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT----------GHTPSNNVHVSTAEVVQVDEGNDITMTCPC  160 (250)
T ss_dssp             CEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEET----------TTSCCSCCEECCCSEEECCTTCCEEECCCE
T ss_pred             eEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEe----------ccCCCCeEEEecCceEEecCCCcEEEEEEe
Confidence            899999999999999999998876542    236777777          33   3333333333447789999999999


Q ss_pred             eeeCCCceeEEEeCCCCCCCCCCc---------------------eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         249 DANPQAQYFTWAFNNSDTAPRPLT---------------------SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       249 ~~~p~~~~~~W~~~~~~~~~~~~~---------------------~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .+.|.|. +.|++++.........                     ...... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus       161 ~g~p~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          161 TDCANAN-VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS-GARNLVIRAAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             ESCTTCE-EEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE-TTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred             cCCCCCe-eEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC-CccEEEEecCCcccCEEEEEEecCCccc
Confidence            9999997 9999987644321100                     000000 1146999999999999999999996664


Q ss_pred             ---ceecEEEE
Q psy3823         308 ---QRTPCTFH  315 (365)
Q Consensus       308 ---~~~~~~l~  315 (365)
                         ...++.|.
T Consensus       239 ~g~~~~~~~l~  249 (250)
T 2fbo_J          239 LDADRSSTILK  249 (250)
T ss_dssp             GGEEEEEEEEE
T ss_pred             cCccceeEEEe
Confidence               44444443

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.83  E-value=6.1e-20  Score=148.28  Aligned_cols=150  Identities=9%  Similarity=0.105  Sum_probs=109.4

Q ss_pred             eEEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCcCCC----------CCCceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823          20 RIYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSGTAP----------RPLTSYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~~l~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      ..+.+.+|++++|.|....  .|.+ .+.|+|++.. +.          ...+.....++   .|.|.+++.+|+|.|+|
T Consensus         4 ~~v~~~~G~~v~L~c~~~~~~~~~~-~i~W~k~~~~-i~~~~~~~~~~~~~~r~~~~~~g---sL~I~~v~~~D~G~Y~C   78 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQMTDDID-EVRWERGSTL-VAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNV   78 (176)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEE-EEEEEETTEE-EEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEE
T ss_pred             eEEEEEcCCcEEEcCCCCCcccccc-cEEEEeCCce-eEEEcCCCeecCCCCeEEECCCC---cEEEcccccccCEEEEE
Confidence            3567899999999995322  4566 9999999854 31          11121222344   59999999999999999


Q ss_pred             EEEeCCCCC--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeC
Q psy3823          88 WARNEQGNQ--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNN  165 (365)
Q Consensus        88 ~a~~~~~~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~  165 (365)
                      .+.+..+..  ...+.|.|...      ...|.+.            ..+..+.|.|.+.+.|++. +.|+++|..+...
T Consensus        79 ~~~n~~g~~~~~~~~~l~V~~~------~~~p~i~------------~~~~~v~L~C~~~g~p~p~-i~W~~~g~~l~~~  139 (176)
T 1hng_A           79 TVYSTNGTRILNKALDLRILEM------VSKPMIY------------WECSNATLTCEVLEGTDVE-LKLYQGKEHLRSL  139 (176)
T ss_dssp             EEEETTCCEEEEEEEEEEEECC------CCCCEEE------------EETTTTEEEEECSSCSSCE-EEEEETTEEEEEE
T ss_pred             EEEeCCCCEEEEEEEEEEEeCC------CCCCEEE------------ecCCcEEEEEEecCCCCcE-EEEEECCEECCCC
Confidence            999988876  46778888311      1223322            2345689999999988876 9999999988643


Q ss_pred             CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC
Q psy3823         166 ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG  202 (365)
Q Consensus       166 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  202 (365)
                      .         .+.|..+..+|+|.|+|.|.|..|...
T Consensus       140 ~---------~~~i~~~~~~d~G~Y~C~a~N~~g~~~  167 (176)
T 1hng_A          140 R---------QKTMSYQWTNLRAPFKCKAVNRVSQES  167 (176)
T ss_dssp             S---------SSEEEEECSCCSSCEEEEEEETTEEEE
T ss_pred             C---------cEEEEEEEccCCeEEEEEEEecCCCce
Confidence            2         245567889999999999999988544

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.83  E-value=9.5e-20  Score=151.04  Aligned_cols=174  Identities=14%  Similarity=0.242  Sum_probs=121.1

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEee------------------CCCCceEEeeceEEEeeecCCCCeEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN------------------NASAGRIITNQTLVLQSVTRHSGGLYA  191 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~------------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~  191 (365)
                      ..+.+|+++.|.|...+.+.+. +.|++++.....                  .........+.+|.|.+++..|+|.|+
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~-v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~   87 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLALGA-FAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT   87 (208)
T ss_dssp             SEEETTCCEEEEEECCCSSCSE-EEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEE
T ss_pred             ceeecCCcEEEEEeCCCCCceE-EEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEE
Confidence            3578999999999977766665 999987432110                  011112223568999999999999999


Q ss_pred             EEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC
Q psy3823         192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL  271 (365)
Q Consensus       192 C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~  271 (365)
                      |.+.+..+...+..+.|.|..+       ...|.+......   +..|+.+.|.|.+.+.| +. +.|+++|..... ..
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~-------~~~p~i~~~~~~---~~~g~~v~l~C~~~~~p-p~-i~W~~~g~~l~~-~~  154 (208)
T 3r4d_A           88 LDMTDENYRRTQATVRFHVHQP-------VTQPFLQVTNTT---VKELDSVTLTCLSNDIG-AN-IQWLFNSQSLQL-TE  154 (208)
T ss_dssp             EEEECSSCEEEEEEEEEEEECC-------CCCCEEEESCSS---CCTTCCEEEEEECSCTT-CE-EEEEETTEECCC-CS
T ss_pred             EEEEcccCceeEEEEEEEeccC-------CCCCEEecCCce---EeeCCCEEEEEECCCCC-Cc-eEEEECCEeCCC-CC
Confidence            9999986544446677777711       122444433332   78899999999998865 66 999998864432 23


Q ss_pred             ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc-eecEEEEEEcC
Q psy3823         272 TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ-RTPCTFHVVKA  319 (365)
Q Consensus       272 ~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~  319 (365)
                      ......++  ..|.|.++..+|+|.|+|.|.|..|.. +.++.|.|..+
T Consensus       155 ~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~  201 (208)
T 3r4d_A          155 RMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD  201 (208)
T ss_dssp             SEEEETTT--TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC--
T ss_pred             CeEEcCCC--CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeC
Confidence            33333332  459999999999999999999999975 45666666544

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.82  E-value=2.4e-20  Score=155.34  Aligned_cols=174  Identities=14%  Similarity=0.195  Sum_probs=119.1

Q ss_pred             cceecCCcEEEEEEEEecCCCC--eeEEEeCCeEEeeC------CC----------CceE-------EeeceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYK--KLIWTHNGITISNN------AS----------AGRI-------ITNQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~--~i~W~~~~~~l~~~------~~----------~~~~-------~~~~~l~i~~~~~  184 (365)
                      +.+.+|++++|.|.+.+.|.+.  .|.|++++..+...      ..          .+..       ..+.+|.|.+++.
T Consensus         9 vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   88 (218)
T 4frw_A            9 VTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQ   88 (218)
T ss_dssp             EEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCG
T ss_pred             EEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccH
Confidence            4578999999999999876653  38899966432110      00          0011       1135799999999


Q ss_pred             CCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCC
Q psy3823         185 HSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS  264 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~  264 (365)
                      +|+|.|.|.+.+..+........+.+.          ..+...........+..|+.+.+.|.+.+.|+|. +.|++++.
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~-i~W~~~~~  157 (218)
T 4frw_A           89 ADEGEYECRVSTFPAGSFQARLRLRVL----------VPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPS-VTWDTEVK  157 (218)
T ss_dssp             GGCEEEEEEEEEETTEEEEEEEEEEEE----------BCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCE-EEEEESSC
T ss_pred             HHCCceeEEEEeccCceeeeEEEEEEe----------eeccceeeeeeeeeeeeccccceeeeccCCcCce-EEEEECCc
Confidence            999999999988766544334444444          3332222222223367889999999999999998 99999876


Q ss_pred             CCCCCCCceeEeeCC---CEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         265 DTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       265 ~~~~~~~~~~~~~~~---~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      ....   ......++   ..+.|.|.++..+|+|.|+|.|.|..|.....+++.|.
T Consensus       158 ~~~~---~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          158 GTTS---SRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             CEEE---EEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             cccc---CceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            4321   11111222   24579999999999999999999999988776666553

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=9.6e-21  Score=168.94  Aligned_cols=180  Identities=19%  Similarity=0.281  Sum_probs=130.8

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      ....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +...... ..........|.|.+++.+|+|.|+|.|.|..+....
T Consensus       131 ~~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  208 (334)
T 1ry7_B          131 KLLAVPAANTVRFRCPAAGNPTP-SISWLKNGRE-FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ  208 (334)
T ss_dssp             CEEEEETTCCEEEECCCCCSSCC-EEECCBTTBC-CCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEE
T ss_pred             eeEEecCCCcEEEEEEccCCCCC-eEEEEECCEE-CcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEE
Confidence            35678899999999998889999 9999999987 6543321 1111122237999999999999999999999887777


Q ss_pred             cEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe----CCeEEeeCCCCce-EEe
Q psy3823          99 PCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH----NGITISNNASAGR-IIT  173 (365)
Q Consensus        99 ~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~----~~~~l~~~~~~~~-~~~  173 (365)
                      .+.|.|....     ..+|.+.....   ....+.+|+.+.|.|.+.+.|.+. +.|++    +|..+........ ...
T Consensus       209 ~~~l~V~~~~-----~~~p~~~~~~~---~~~~~~~G~~v~l~C~~~g~p~p~-v~W~~~~~~~g~~~~~~~~~~~~~~~  279 (334)
T 1ry7_B          209 TYTLDVLERS-----PHRPILQAGLP---ANQTAVLGSDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLK  279 (334)
T ss_dssp             EEEEEEECCC-----CSSCBCCTTCS---CCEEEESSCCEEECCCCBCSSCEE-EEEEECCCGGGCSBCTTSSBCCCCCC
T ss_pred             EEEEEEecCC-----CCCCceEecCC---CceEEeCCCCEEEEEEEecCCCCe-EEEEECCcCCCccccCCCCeeEEEee
Confidence            8888884210     11232221111   234678999999999999988886 99999    6666643222110 111


Q ss_pred             ----------eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         174 ----------NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       174 ----------~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                                ...|.|.+++..|+|.|+|.|.|..|... ..+.|.|.
T Consensus       280 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~  326 (334)
T 1ry7_B          280 TAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSH-HSAWLVVL  326 (334)
T ss_dssp             CSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEE-EEEEEEEE
T ss_pred             cCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEE-EEEEEEEE
Confidence                      23799999999999999999999999766 57788887

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.82  E-value=1.2e-19  Score=150.00  Aligned_cols=173  Identities=13%  Similarity=0.116  Sum_probs=118.1

Q ss_pred             ceecCCcEEEEEEEEecCCCCeeEEEeCC-eEEeeCCCCceEE--eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEE
Q psy3823         131 VLNEGVDIYFDCHIQANPPYKKLIWTHNG-ITISNNASAGRII--TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFD  207 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~~-~~l~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~  207 (365)
                      .+.+|+.+.|.|.+.|.|.+. +.|+++. .++.    .....  ....|.|.+++..|+|.|.|.+.|..+.. +..+.
T Consensus        12 ~~~~G~~v~L~C~~~g~P~p~-i~W~~~~~~~~~----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~~~   85 (202)
T 1vca_A           12 LAQIGDSVSLTCSTTGCESPF-FSWRTQIDSPLN----GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQ   85 (202)
T ss_dssp             EEETTSCEEEEEEEESCSSCE-EEEEETTCCCCS----SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEE
T ss_pred             EEcCCCcEEEEEeecCCCCCe-EEEECCCCCCcc----ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceE-eeEEE
Confidence            345999999999999988887 9999842 2111    11111  24579999999999999999999987654 36788


Q ss_pred             EEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-c-eeEEEeCCCCCCCCCCceeE---eeCCCEE
Q psy3823         208 LNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-Q-YFTWAFNNSDTAPRPLTSYS---IQDGSTS  282 (365)
Q Consensus       208 l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~-~~~W~~~~~~~~~~~~~~~~---~~~~~~s  282 (365)
                      |.|.          .+|........ ..+.+|+.++|.|.+.+.+++ . .+.|++++............   ......+
T Consensus        86 l~V~----------~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~  154 (202)
T 1vca_A           86 VEIY----------SFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSL  154 (202)
T ss_dssp             EEEE----------BCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEE
T ss_pred             EEEE----------eCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEE
Confidence            8888          55543322222 338899999999999986543 2 48999987532111000000   0011234


Q ss_pred             EEEEcCCCcccCeEEEEEEEcCCccc-------eecEEEEEEcCc
Q psy3823         283 VARYTPTSELEYGTLLCWARNEQGSQ-------RTPCTFHVVKAG  320 (365)
Q Consensus       283 ~l~i~~v~~~d~G~Y~C~a~n~~g~~-------~~~~~l~v~~~~  320 (365)
                      .|.|..+..+|.|.|+|.|.|..|..       +.++.|.|..++
T Consensus       155 ~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P  199 (202)
T 1vca_A          155 EVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  199 (202)
T ss_dssp             EEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             EEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCC
Confidence            57888888889999999999998863       456677776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.82  E-value=9.5e-21  Score=170.08  Aligned_cols=170  Identities=16%  Similarity=0.187  Sum_probs=130.8

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCe-EEEEEEEeCCCCCc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG-TLLCWARNEQGNQR   97 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~~~~~~~~   97 (365)
                      +....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +......  ........|.|.+++.+|+| .|+|.|.+..+...
T Consensus       165 ~~~~~v~~G~~v~L~C~~~g~p~p-~i~W~~~~~~-~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~  240 (347)
T 2ifg_A          165 VPNASVDVGDDVLLRCQVEGRGLE-QAGWILTELE-QSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAE  240 (347)
T ss_dssp             CCSSCCBTTCCEEEEEEEECSSCC-CCCEEESCCC-SSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECC
T ss_pred             CCceEEeCCCcEEEEEEEecCCCC-EEEEEcCCce-eeccccc--ceecccceEEEeeCChHHCCCeEEEEEEcCCCCEE
Confidence            344567899999999998889999 9999999876 4321110  12334558999999999999 99999999988877


Q ss_pred             ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceE------
Q psy3823          98 TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRI------  171 (365)
Q Consensus        98 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~------  171 (365)
                      ..+.|.|         ..+|.+ ..       ..+.+|+.++|.|.+.|.|.|. +.|+++|..+.........      
T Consensus       241 ~~~~l~V---------~~~P~i-~~-------~~~~~g~~v~l~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~  302 (347)
T 2ifg_A          241 VSVQVNV---------SFPASV-QL-------HTAVEMHHWCIPFSVDGQPAPS-LRWLFNGSVLNETSFIFTEFLEPAA  302 (347)
T ss_dssp             EEECCCC---------BEEEEE-EE-------CCCEESSSEEEEEEEEEESCCE-EEEEETTEECCCCSSEEEEECCCCT
T ss_pred             EEEEEEE---------cCCCee-ee-------ccCccCceEEEEEEeeecCCCc-EEEEeCCEECCCCcceeeEEEeecC
Confidence            7777777         556664 11       1356899999999999998886 9999999988743221111      


Q ss_pred             ---EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         172 ---ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       172 ---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                         ...++|.|.+++..|+|.|+|.|.|..|... ..+.|.|.
T Consensus       303 ~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~  344 (347)
T 2ifg_A          303 NETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS-ASIMAAFM  344 (347)
T ss_dssp             TCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEE-EEEEECSC
T ss_pred             CCcccceEEEECCCCcccCceEEEEEecCCCcee-eEEEEEec
Confidence               1256799999999999999999999998654 56666665

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.82  E-value=5.1e-19  Score=156.64  Aligned_cols=206  Identities=15%  Similarity=0.165  Sum_probs=134.9

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+|.+...+.     ..+.+|++++|.|.+.+. .+. +.|+++|..+...  .........|.|.+++..|+|.|+|.
T Consensus        22 ~~~P~i~~~p~-----~~v~~G~~v~L~C~~~~~-~~~-~~W~k~g~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~   92 (316)
T 3vh8_G           22 QDKPFLSAWPS-----AVVPRGGHVTLRCHYRHR-FNN-FMLYKEDRIHIPI--FHGRIFQESFNMSPVTTAHAGNYTCR   92 (316)
T ss_dssp             --CCEEEEESC-----SEEETTSCEEEEEEBTTB-CCS-EEEEESSCSSSCH--HHHCCBSSCEEECSCCGGGCEEEEEE
T ss_pred             CCCCEeeccCC-----CccCCCCCEEEEEEccCC-Cce-EEEEeCCCcccee--ecCCcceEEEEECCCCcccCeEEEEE
Confidence            56888877764     257899999999999887 445 9999998765321  01112357899999999999999999


Q ss_pred             EEcCCC----CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC
Q psy3823         194 AINSQG----EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR  269 (365)
Q Consensus       194 ~~~~~~----~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~  269 (365)
                      +.+..+    ...+..+.|.|..       ...+|.+...+.. . +.+|+.++|.|.+. .+++. +.|+++|......
T Consensus        93 a~~~~~~~~~~~~s~~~~l~V~~-------~~~~p~~~~~~~~-~-v~~G~~v~L~C~~~-~~~~~-~~w~k~g~~~~~~  161 (316)
T 3vh8_G           93 GSHPHSPTGWSAPSNPVVIMVTG-------NHRKPSLLAHPGP-L-VKSGERVILQCWSD-IMFEH-FFLHKEGISKDPS  161 (316)
T ss_dssp             EBCSSSSSSBCCCCCCEEEEEEC-------SSCCCEEEEESCS-E-EETTCCEEEEEEES-SCCSE-EEEEETTCCSCCE
T ss_pred             EEcCCCCcceecCCCcEEEEEec-------CCCCCeEEecCCC-c-cCCCCeEEEEEcCC-CCCcE-EEEEECCCccccc
Confidence            986432    2334567777761       1124444433322 2 78999999999995 45555 9999988744221


Q ss_pred             CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc-----eecEEEEEEcC--cc-c----cccCccccEEEEEEE
Q psy3823         270 PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ-----RTPCTFHVVKA--GE-C----EHPVAVSHRYVAKLY  337 (365)
Q Consensus       270 ~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~--~~-c----~~~l~~~~~~~~~~~  337 (365)
                      ..............|.|.+++.+|+|.|+|.|.|..|..     +..+.|.|...  .+ -    ...+.+|...++.|.
T Consensus       162 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~  241 (316)
T 3vh8_G          162 RLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCS  241 (316)
T ss_dssp             EEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEE
T ss_pred             eeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEE
Confidence            111111122344579999999999999999999998852     45566666532  11 0    113455666666665


Q ss_pred             EE
Q psy3823         338 AT  339 (365)
Q Consensus       338 ~~  339 (365)
                      +.
T Consensus       242 ~~  243 (316)
T 3vh8_G          242 SR  243 (316)
T ss_dssp             ES
T ss_pred             CC
Confidence            54

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.82  E-value=8.1e-19  Score=150.28  Aligned_cols=171  Identities=14%  Similarity=0.225  Sum_probs=117.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC-----CcceEEEEeCCCc-CCC------------CCCceeEecCCeEEEEEEccCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP-----QAQYFTWAFNNSG-TAP------------RPLTSYSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p-----~~~~v~W~~~~~~-~l~------------~~~~~~~~~~~~~~~l~i~~~~~~   80 (365)
                      +..+.+.+|++++|.|.+.+.|     .+ .+.|+|++.. .+.            ...+......+....|.|.+++.+
T Consensus        45 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  123 (254)
T 2c1o_A           45 PLTLSVTIGQPASISCKSSQSLLYSNGKT-YLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAE  123 (254)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCSSSCB-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CceEEecCCCcEEEEeeccCcccccCCCC-ceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcc
Confidence            4567889999999999987777     36 9999985421 010            011212222344558999999999


Q ss_pred             CCeEEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeC
Q psy3823          81 EYGTLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHN  158 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~  158 (365)
                      |+|.|+|.|.+..+... ....|.|..      +..+|.+.+.+..    ....+|+.++|.|.+.+ .|++..+.|+++
T Consensus       124 D~G~Y~C~a~n~~~~~~~~~~~l~V~~------~~~~P~v~~~~~~----~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~  193 (254)
T 2c1o_A          124 DLGIYYCVQGSHFPPTFGAGTKLELKR------ADAAPTVSIFPPS----SEQLTSGGASVVCFLNNFYPKDINVKWKID  193 (254)
T ss_dssp             GCSEEEEEECSSSSCEEBCCEEEEECC------CCBCCEEEEECCC----HHHHHTTEEEEEEEEEEEBSSCCEEEEEES
T ss_pred             cCEEEEEEEEcCcceEecCCEEEEECC------CCCCCeeEeecCC----hhhccCCcEEEEEEEecccCCCcEEEEEEC
Confidence            99999999998755322 345677621      1236776665432    22346889999999998 444455999999


Q ss_pred             CeEEeeC---------CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         159 GITISNN---------ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       159 ~~~l~~~---------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      |..+...         ...+.......|.|.++..+|+|.|+|.|.|....
T Consensus       194 g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          194 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  244 (254)
T ss_dssp             SSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence            9887643         01111223468999999999999999999998754

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.82  E-value=7.3e-19  Score=146.28  Aligned_cols=171  Identities=13%  Similarity=0.201  Sum_probs=116.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC---CcceEEEEeCCCc-CC------------CCCCceeEecCCeEEEEEEccCCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP---QAQYFTWAFNNSG-TA------------PRPLTSYSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p---~~~~v~W~~~~~~-~l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      +....+.+|+.++|.|.+.+.|   .+ .+.|+|++.. .+            ....+...........|.|.+++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   85 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSN-YANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDE   85 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGG-CCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCC-eEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCC
Confidence            5567789999999999987777   46 8999997421 01            011121222233445899999999999


Q ss_pred             eEEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC-CCeeEEEeCCe
Q psy3823          83 GTLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP-YKKLIWTHNGI  160 (365)
Q Consensus        83 G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~~i~W~~~~~  160 (365)
                      |.|+|.+.+..+... ....|.|...     +..+|.+.+.+..    ....+|+.++|.|.+.+.++ +..+.|+++|.
T Consensus        86 G~Y~C~~~~~~~~~~~~~~~l~V~~~-----~~~~P~v~~~~~~----~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  156 (212)
T 1q0x_L           86 AIYFCALWSNNKLVFGGGTKLTVLGQ-----PKSSPTVTLFPPS----SEELSTAKATLVCTITDFYPGVVTVDWKVDGT  156 (212)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEECCS-----CCBCCEEEEECCC----HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             EEEEEEEecCchhhcCCCeEEEEecC-----CCCCCeeEEeCCC----HHHccCCcEEEEEEEEEEeCCCeEEEEEECCE
Confidence            999999998765322 4456666210     1246776665432    23457899999999998544 33699999999


Q ss_pred             EEeeCCC--------CceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         161 TISNNAS--------AGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       161 ~l~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      .+.....        .+.......|.|.....+|+|.|+|.|.|...
T Consensus       157 ~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          157 PVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH  203 (212)
T ss_dssp             EECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             eCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence            8853211        01112234688999999999999999998764

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.82  E-value=2.8e-20  Score=151.29  Aligned_cols=160  Identities=13%  Similarity=0.164  Sum_probs=117.3

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CCCC------------CceeEec---CCeEEEEEEccCCCCCCe
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-APRP------------LTSYSIQ---DGSTSVARYTPTSELEYG   83 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~~~------------~~~~~~~---~~~~~~l~i~~~~~~d~G   83 (365)
                      ..+.+.+|++++|.|...+.|.+ .+.|++++... +...            .......   .....+|.|.+++.+|+|
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G   81 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD   81 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSSCC-CEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCE
T ss_pred             CcEEEeCCCCEEEEEEEcCCCce-EEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCE
Confidence            35678999999999998788888 99999998630 1100            0001110   111336999999999999


Q ss_pred             EEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEe
Q psy3823          84 TLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITIS  163 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~  163 (365)
                      .|+|.+.+..    ..+.|.|         ..   +.. +    ....+.+|++++|.|.+.+.|.+. +.|++++..+ 
T Consensus        82 ~Y~C~~~~~~----~~~~l~V---------~~---~~~-~----~~~~v~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~-  138 (184)
T 2ny1_B           82 TYICEVEDQK----EEVQLLV---------FG---LTA-N----SDTHLLQGQSLTLTLESPPGSSPS-VQCRSPRGKN-  138 (184)
T ss_dssp             EEEEEETTEE----EEEEEEE---------EE---EEE-S----SCSEEETTCCEEEEEECCTTCCCE-EEEECTTSCE-
T ss_pred             EEEEEEEcCC----CcEEEEE---------EE---ecC-C----CCceeecCCCEEEEEEcCCCCCCE-EEEEeCCCcc-
Confidence            9999998764    3566666         21   111 1    223678999999999999887776 9999987654 


Q ss_pred             eCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         164 NNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       164 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                             ......|.|.+++.+|+|.|+|.|.|..+... ..+.|.|.
T Consensus       139 -------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~-~~~~l~V~  178 (184)
T 2ny1_B          139 -------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE-FKIDIVVL  178 (184)
T ss_dssp             -------EEESSEEEESSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             -------ccCceEEEEecCCcCCCeEEEEEEEECCceEE-EEEEEEEE
Confidence                   23567899999999999999999998776554 56777777

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.82  E-value=1.6e-18  Score=144.65  Aligned_cols=171  Identities=18%  Similarity=0.223  Sum_probs=115.6

Q ss_pred             ceEEEEecCCcEEEEEE-eCCCC-CcceEEEEeCCCc-CCC----------C--CCceeEecCCeEEEEEEccCCCCCCe
Q psy3823          19 QRIYGALRNEQVLVSCT-VDANP-QAQYFTWAFNNSG-TAP----------R--PLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~-~~~~p-~~~~v~W~~~~~~-~l~----------~--~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +....+.+|++++|.|. ..+.+ .+ .+.|+|++.. .+.          .  ..+...........|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNN-YVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCC-eEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence            45677899999999999 45443 45 9999996531 010          0  11112222334558999999999999


Q ss_pred             EEEEEEEeCCCC--CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCe
Q psy3823          84 TLLCWARNEQGN--QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGI  160 (365)
Q Consensus        84 ~Y~C~a~~~~~~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~  160 (365)
                      .|+|.+.+..+.  ......|.|..      +..+|.+.+.+..    ....+|+.++|.|.+.+ .|++..+.|+++|.
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~~------~~~~P~v~~~~~~----~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~  155 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIKR------TVAAPSVFIFPPS----DEQLKSGTASVVCLLNNFYPREAKVQWKVDNA  155 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEECC------CCBCCEEEEECCC----HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             EEEEEEEeCCCcceECCCEEEEEcC------CCCCCceEEeCCC----hhhccCCcEEEEEEEEeEcCCceEEEEEECCe
Confidence            999999987751  12455677721      1246776654432    12346889999999998 45544699999999


Q ss_pred             EEeeC-C--------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         161 TISNN-A--------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       161 ~l~~~-~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .+... .        ..+.......|.|..+..+|+|.|+|.|.|....
T Consensus       156 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          156 LQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             ECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             ecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence            87543 0        0111122347899999999999999999998654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.82  E-value=9.6e-20  Score=162.83  Aligned_cols=184  Identities=11%  Similarity=0.120  Sum_probs=135.3

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEE-------ecCCCCeeEEEeCCeEE--eeCCCCceEEeeceEEEeeecCCC
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQ-------ANPPYKKLIWTHNGITI--SNNASAGRIITNQTLVLQSVTRHS  186 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~-------~~p~~~~i~W~~~~~~l--~~~~~~~~~~~~~~l~i~~~~~~d  186 (365)
                      .|.+...+    ....+.+|+.+.|.|.+.       +.|.+. +.|++++..+  ......+....+++|.|.+++..|
T Consensus        18 ~p~~~~~~----~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D   92 (339)
T 3o4o_C           18 CRFRGRHY----KREFRLEGEPVALRCPQVPYWLWASVSPRIN-LTWHKNDSARTVPGEEETRMWAQDGALWLLPALQED   92 (339)
T ss_dssp             CEEEEECS----CCEEEETTBCCEEECTTSCSSCCSTTSSCCB-CCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTC
T ss_pred             hHhhCcCc----eEEEEECCccEEEEeccccccccccCCCCce-EEEEECCCCcccCccccccEEeeCCeEEECCCCccc
Confidence            45554444    345788999999999997       777776 9999999874  332233455667899999999999


Q ss_pred             CeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecC-ccceeeeecCceEEEEEE-----EeeeCCCceeEEE
Q psy3823         187 GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQS-QQRIYGALRNEQVLVSCT-----VDANPQAQYFTWA  260 (365)
Q Consensus       187 ~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~-~~~~~~~~~g~~~~l~C~-----~~~~p~~~~~~W~  260 (365)
                      +|.|+|.+.|..|... ..+.|.|.          ..|..... ......+..|+.+.|.|.     +.+.|.+. +.|+
T Consensus        93 ~G~Y~C~~~n~~g~~~-~~~~l~V~----------~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~-v~W~  160 (339)
T 3o4o_C           93 SGTYVCTTRNASYCDK-MSIELRVF----------ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVK-IQWY  160 (339)
T ss_dssp             CEEEECCEEETTEEEE-EEEEEEEE----------CSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCC-BCCE
T ss_pred             CEEEEEEEECCcceEE-EEEEEEEE----------cCCCccccccccceEEECCCCEEEEecCCcccccCCCCce-EEEe
Confidence            9999999999877443 66778887          55443211 111123789999999999     78889998 9999


Q ss_pred             eCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc----ceecEEEEEEc
Q psy3823         261 FNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS----QRTPCTFHVVK  318 (365)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~v~~  318 (365)
                      ++|...............  ...|.|.+++.+|+|.|+|.|.|..|.    .+..+.|.|..
T Consensus       161 k~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~  220 (339)
T 3o4o_C          161 KDSLLLDKDNEKFLSVRG--TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKK  220 (339)
T ss_dssp             ESSCBCCTTCSSEEECTT--SSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEEC
T ss_pred             cCCeeCCCCCceeEEcCC--cceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEc
Confidence            998765443333332222  236999999999999999999999884    55677777763

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.81  E-value=1.8e-18  Score=144.01  Aligned_cols=171  Identities=15%  Similarity=0.220  Sum_probs=118.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|+.++|.|.+.+.|.+ .+.|+|..... .            ....+...........|.|.+++.+|+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   86 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDISN-YLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSY   86 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCEEEecCCCcEEEEEEeCCCcCc-eEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEE
Confidence            456778999999999998888888 99999843210 0            001111122233445899999999999999


Q ss_pred             EEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC-CCeeEEEeCCeEEe
Q psy3823          86 LCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP-YKKLIWTHNGITIS  163 (365)
Q Consensus        86 ~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~~i~W~~~~~~l~  163 (365)
                      +|.+.+..+... ....|.|..      +..+|.+.+.+..    .....|+.++|.|.+.+.++ +..+.|+++|..+.
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~------~~~~p~v~~~~~~----~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  156 (213)
T 3r06_A           87 YCQQYYNYPWTFGPGTKLEIKR------ADAKPTVSIFPPS----SEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKR  156 (213)
T ss_dssp             EEEECSSSSCEECCCEEEEECC------CCBCCEEEEECCC----HHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             EEecccCCceEEcCCceEEEec------cCCCceeeeeCCC----ceecCCCCcEEEEEEeeecCCceEEEEEECCcccC
Confidence            999988654322 556677721      1356777665532    34557888999999998654 34599999999885


Q ss_pred             eCC---------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         164 NNA---------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       164 ~~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      ...         ..+.......|.|.....+|+|.|+|.+.|....
T Consensus       157 ~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          157 DGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             CceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            321         1112222356888888889999999999998653

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.81  E-value=4.5e-19  Score=148.48  Aligned_cols=175  Identities=12%  Similarity=0.210  Sum_probs=116.2

Q ss_pred             ceecCCcEEEEEEEEecCCC----CeeEEEeCCeEEeeCCC-------------CceEEe-------eceEEEeeecCCC
Q psy3823         131 VLNEGVDIYFDCHIQANPPY----KKLIWTHNGITISNNAS-------------AGRIIT-------NQTLVLQSVTRHS  186 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~----~~i~W~~~~~~l~~~~~-------------~~~~~~-------~~~l~i~~~~~~d  186 (365)
                      .+.+|+++.|.|.+.+.|.+    ..+.|++++..+.....             .+....       +.+|.|.+++.+|
T Consensus        12 ~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D   91 (222)
T 3sbw_C           12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQD   91 (222)
T ss_dssp             EEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGGG
T ss_pred             EEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCccccc
Confidence            57789999999998766532    24999997654421100             111111       2489999999999


Q ss_pred             CeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCC
Q psy3823         187 GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDT  266 (365)
Q Consensus       187 ~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~  266 (365)
                      +|.|+|.+.+ .+. ....+.|.|.          .+|........ ..+..|+.+.|.|.+.|.|.|. +.|+++++..
T Consensus        92 ~G~Y~C~~~~-~~~-~~~~~~l~V~----------~~~~~~~~~~~-~~~~~g~~v~L~C~~~g~P~p~-i~W~~~~g~~  157 (222)
T 3sbw_C           92 AGVYRCMISY-GGA-DYKRITVKVN----------APYNKINQRIL-VVDPVTSEHELTCQAEGYPKAE-VIWTSSDHQV  157 (222)
T ss_dssp             CEEEEEEEES-SSE-EEEEEEEEEE----------BCCCCCEEEEE-EEETTTTEEEEEEEEEEBSCCE-EEEEETTCCE
T ss_pred             CeEEEEEEEe-CCC-ceeEEEEEEE----------CCCCCCCceee-eeecCCCcEEEEEEecCCCCCe-EEEEECCCce
Confidence            9999999998 333 3356778887          44432221111 1267899999999999999998 9999984433


Q ss_pred             CCCCCcee--EeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         267 APRPLTSY--SIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       267 ~~~~~~~~--~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      ........  ...++......+..+..+|.|.|+|.|.|..|.....+.|.|...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~  212 (222)
T 3sbw_C          158 LSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL  212 (222)
T ss_dssp             ECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC
T ss_pred             ecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCC
Confidence            22211111  122333333333345578999999999999999988888887643

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=4.7e-19  Score=150.49  Aligned_cols=170  Identities=15%  Similarity=0.159  Sum_probs=120.5

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC--CcccE
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN--QRTPC  100 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~--~~~~~  100 (365)
                      .+.+|++++|.|.... +.. .+.|+|++.. +....... ........|.|.+++.+|+|.|+|.+.+..+.  ....+
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~-~~~w~k~g~~-~~~~~~~~-~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~   92 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAV-EYQLHFEGSL-FAVDRPKP-PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL   92 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCC-EEEEEETTEE-EEEECCSS-CTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCE
T ss_pred             ccCCCCcEEEEEeeCC-CCc-EEEEEECCCc-cccccccc-cCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcce
Confidence            6889999999999754 345 8999999876 43110000 11233458999999999999999999875443  23667


Q ss_pred             EEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEe
Q psy3823         101 TFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQ  180 (365)
Q Consensus       101 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~  180 (365)
                      .|.|...      ..+|.+...+.     ..+.+|++|+|.|.+.+.+ + .+.|+++|..+...  ......+..|.|.
T Consensus        93 ~L~V~~~------~~~P~i~~~p~-----~~v~~G~~vtL~C~~~~~~-~-~~~w~k~g~~~~~~--~~~~~~~~~l~I~  157 (242)
T 1p6f_A           93 DLVVTEM------YDTPTLSVHPG-----PEVISGEKVTFYCRLDTAT-S-MFLLLKEGRSSHVQ--RGYGKVQAEFPLG  157 (242)
T ss_dssp             EEEEECC------SCCCEEEEESC-----SEEETTCEEEEEEECTTSC-S-EEEEEECSSSCEEE--EEECSSEEEEEEE
T ss_pred             EEEeecc------cCCCceEccCC-----CccCCCCcEEEEEecCCCC-C-EEEEEECCCccCcc--ccCCCceEEEEeC
Confidence            8887321      23677665442     3578999999999987543 3 49999998766431  0111235789999


Q ss_pred             eecCCCCeEEEEEEEcCC--CCCCcccEEEEEe
Q psy3823         181 SVTRHSGGLYACSAINSQ--GEGGSTPFDLNIN  211 (365)
Q Consensus       181 ~~~~~d~G~Y~C~~~~~~--~~~~s~~~~l~v~  211 (365)
                      +++..|+|.|+|.+.|..  ....+..+.|.|.
T Consensus       158 ~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  190 (242)
T 1p6f_A          158 PVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  190 (242)
T ss_dssp             ECCGGGCEEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             CCccccCEEEEEEEECCCCcccCCCCCEEEEEe
Confidence            999999999999999864  3345577888887

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.81  E-value=7.7e-19  Score=144.97  Aligned_cols=171  Identities=16%  Similarity=0.256  Sum_probs=114.4

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc---eEEeeceEEEeeecCCCCeEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG---RIITNQTLVLQSVTRHSGGLY  190 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y  190 (365)
                      ..+|.+...+.     ..+.+|++++|.|.+.+ +.+. +.|+++|..+.......   ....+..|.|.+++..|+|.|
T Consensus         6 ~~~P~i~~~p~-----~~v~~G~~v~L~C~~~~-~~~~-~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   78 (201)
T 1nkr_A            6 HRKPSLLAHPG-----PLVKSEETVILQCWSDV-MFEH-FLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTY   78 (201)
T ss_dssp             -CCCEEEEESC-----SEEETTCCEEEEEEESS-CCSE-EEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEE
T ss_pred             CCCCeEEEEcC-----CccCCCCcEEEEEeccC-CCCE-EEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEE
Confidence            45777766542     36789999999999864 4444 99999887653211000   012357899999999999999


Q ss_pred             EEEEEcCC----CCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCC
Q psy3823         191 ACSAINSQ----GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDT  266 (365)
Q Consensus       191 ~C~~~~~~----~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~  266 (365)
                      +|.+.+..    ....+..+.|.|..       ...+|.+...+..  .+.+|+.++|.|.+.+ +.+. +.|+++|...
T Consensus        79 ~C~a~~~~~~~~~~~~s~~~~l~V~~-------~~~~p~i~~~p~~--~v~~G~~v~L~C~~~~-~~~~-~~w~k~g~~~  147 (201)
T 1nkr_A           79 RCYGSVTHSPYQVSAPSDPLDIVIIG-------LYEKPSLSAQPGP--TVLAGENVTLSCSSRS-SYDM-YHLSREGEAH  147 (201)
T ss_dssp             EEEEEBTTBTTCCCCCCCCEEEEEEC-------SSCCCEEEEESCS--EECTTCEEEEEEEESS-CCSE-EEEEETTCSS
T ss_pred             EEeEecCCCCccccCCCCCEEEEeec-------cCCCCceecCCCC--ccCCCCeEEEEEeCCC-CCce-EEEEECCccc
Confidence            99998653    22334667788771       1124555433322  3789999999999875 5566 9999998643


Q ss_pred             CCCCCceeEeeCC-CEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         267 APRPLTSYSIQDG-STSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       267 ~~~~~~~~~~~~~-~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      .... .......+ ....|.|.+++  |+|.|+|.|.+..
T Consensus       148 ~~~~-~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          148 ERRL-PAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             CEEE-ECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             Cccc-ccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            2211 11111222 24569999998  9999999999753

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.81  E-value=1.5e-18  Score=146.79  Aligned_cols=171  Identities=15%  Similarity=0.199  Sum_probs=118.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|...+.|.+ .+.|+|.+... .            ....+..........+|.|.+++.+|+|.|
T Consensus        31 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  109 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRASQDVST-AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATY  109 (237)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCc-eEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEE
Confidence            456788999999999998777888 99999954210 0            001111222233456899999999999999


Q ss_pred             EEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC-CCeeEEEeCCeEEe
Q psy3823          86 LCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP-YKKLIWTHNGITIS  163 (365)
Q Consensus        86 ~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~~i~W~~~~~~l~  163 (365)
                      +|.+.+..+... ....|.|..      +..+|.+.+.+..    ....+|+.++|.|.+.+.++ ...+.|+++|..+.
T Consensus       110 ~C~~~~~~~~~~~~~~~l~V~~------~~~~p~v~~~~~~----~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~  179 (237)
T 3sob_L          110 YCQQSYTTPPTFGQGTKVEIKR------TVAAPSVFIFPPS----DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS  179 (237)
T ss_dssp             EEEECSSSSCEECCCEEEEEEC------CCBCCEEEEECCC----HHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             EEeeccCCceEEcCcEEEEEec------CCCCCceEEeCCC----hhhccCCceEEEEEEcccCCCceEEEEEECCCCCC
Confidence            999987665322 455666632      1446776665432    23456889999999998444 44599999998876


Q ss_pred             eCC---------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         164 NNA---------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       164 ~~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      ...         ..+.......|.|.....+|+|.|+|.|.|....
T Consensus       180 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          180 GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             CceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence            321         1112223457889999999999999999998754

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.81  E-value=5.8e-19  Score=146.78  Aligned_cols=167  Identities=14%  Similarity=0.182  Sum_probs=116.9

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CC------------CCCceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-AP------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      ...+.+|+.++|.|.+.  |.+ .+.|+|+.... ..            ...+...........|.|.+++.+|+|.|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNN-FVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYC   85 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSS-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCC-eEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEE
Confidence            67789999999999976  777 99999953110 10            1111121223345589999999999999999


Q ss_pred             EEEeCCC--CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecC-CCCeeEEEeCCeEEee
Q psy3823          88 WARNEQG--NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISN  164 (365)
Q Consensus        88 ~a~~~~~--~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~~i~W~~~~~~l~~  164 (365)
                      .+.+..+  .....+.|.|..     .+..+|.+.+.+..    ....+|+.++|.|.+.+.+ +...+.|+++|..+..
T Consensus        86 ~~~~~~~~~~~~~~~~l~V~~-----~~~~~P~v~~~~~~----~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  156 (211)
T 3tv3_L           86 GSLVGNWDVIFGGGTKLTVLG-----QPKAAPSVTLFPPS----SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA  156 (211)
T ss_dssp             EEEETTTEEEECCCEEEEECC-----SCCBCCEEEEECCC----HHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             EEecCCCceeECCCceEEEeC-----CCCcCCeeEecCCc----hhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence            9999877  334667888821     11257777766532    2344799999999999853 3445999999998853


Q ss_pred             CC--------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         165 NA--------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       165 ~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      ..        ..+.......|.|.++..+|+|.|+|.+.|..+
T Consensus       157 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~  199 (211)
T 3tv3_L          157 GVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  199 (211)
T ss_dssp             TEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred             CcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence            10        111122235688999888999999999999875

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=1.3e-18  Score=147.66  Aligned_cols=182  Identities=13%  Similarity=0.166  Sum_probs=127.3

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCC-ceEEeeceEEEeeecCCCCeEEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASA-GRIITNQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C  192 (365)
                      ..+|.+...+..     .+.+|++|+|.|.+.+.  +..+.|+++|..+...... .....+..|.|.+++..|+|.|+|
T Consensus         5 ~~kP~i~~~P~~-----~v~~G~~VtL~C~~~~~--~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   77 (242)
T 1p6f_A            5 LPKPFIWAEPHF-----MVPKEKQVTICCQGNYG--AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSC   77 (242)
T ss_dssp             CCCCEEEEESCS-----EEETTCCEEEEEECCTT--CCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEE
T ss_pred             CCCCEEEeeCCC-----ccCCCCcEEEEEeeCCC--CcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEE
Confidence            457887776632     68899999999997642  3449999999877531111 111235689999999999999999


Q ss_pred             EEEcCCCC-CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC
Q psy3823         193 SAINSQGE-GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL  271 (365)
Q Consensus       193 ~~~~~~~~-~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~  271 (365)
                      .+.+..+. ..+..+.|.|..       ...+|.+...+. . .+.+|+.++|.|.+.+. .+. +.|+++|.....   
T Consensus        78 ~~~~~~~~s~~S~~~~L~V~~-------~~~~P~i~~~p~-~-~v~~G~~vtL~C~~~~~-~~~-~~w~k~g~~~~~---  143 (242)
T 1p6f_A           78 IYRVGELWSEPSNLLDLVVTE-------MYDTPTLSVHPG-P-EVISGEKVTFYCRLDTA-TSM-FLLLKEGRSSHV---  143 (242)
T ss_dssp             EEEETTEECCCCCCEEEEEEC-------CSCCCEEEEESC-S-EEETTCEEEEEEECTTS-CSE-EEEEECSSSCEE---
T ss_pred             EEecCCccccCCcceEEEeec-------ccCCCceEccCC-C-ccCCCCcEEEEEecCCC-CCE-EEEEECCCccCc---
Confidence            99876442 345677788761       012565553332 2 27899999999998754 455 999999864321   


Q ss_pred             ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC---ccceecEEEEEEc
Q psy3823         272 TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ---GSQRTPCTFHVVK  318 (365)
Q Consensus       272 ~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~---g~~~~~~~l~v~~  318 (365)
                        ..........|.|.+++.+|+|.|+|.|.|..   ...+..+.|.|..
T Consensus       144 --~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          144 --QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             --EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             --cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence              11123445679999999999999999999864   2345677777764

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.81  E-value=1.2e-19  Score=147.55  Aligned_cols=157  Identities=10%  Similarity=0.150  Sum_probs=116.7

Q ss_pred             ceecCCcEEEEEEEEecCCCCeeEEEeCCeE--EeeCC----------CCceEEe-------eceEEEeeecCCCCeEEE
Q psy3823         131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGIT--ISNNA----------SAGRIIT-------NQTLVLQSVTRHSGGLYA  191 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~--l~~~~----------~~~~~~~-------~~~l~i~~~~~~d~G~Y~  191 (365)
                      .+.+|+++.|.|.+.+.|.+. +.|++++..  +....          ..+....       ..+|.|.+++.+|+|.|+
T Consensus         6 ~~~~G~~v~L~C~~~~~~~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   84 (184)
T 2ny1_B            6 LGKKGDTVELTCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   84 (184)
T ss_dssp             EEETTSCEEECCBCSSSSCCC-EEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCceE-EEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEE
Confidence            578999999999998877777 999998763  21100          0111111       345999999999999999


Q ss_pred             EEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC
Q psy3823         192 CSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL  271 (365)
Q Consensus       192 C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~  271 (365)
                      |.+.+..+     .+.|.|.          .   +..+. . ..+..|+.++|.|.+.+.|.+. +.|++++...     
T Consensus        85 C~~~~~~~-----~~~l~V~----------~---~~~~~-~-~~v~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~-----  138 (184)
T 2ny1_B           85 CEVEDQKE-----EVQLLVF----------G---LTANS-D-THLLQGQSLTLTLESPPGSSPS-VQCRSPRGKN-----  138 (184)
T ss_dssp             EEETTEEE-----EEEEEEE----------E---EEESS-C-SEEETTCCEEEEEECCTTCCCE-EEEECTTSCE-----
T ss_pred             EEEEcCCC-----cEEEEEE----------E---ecCCC-C-ceeecCCCEEEEEEcCCCCCCE-EEEEeCCCcc-----
Confidence            99987643     4556665          2   11111 1 1278999999999999889887 9999987532     


Q ss_pred             ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcCc
Q psy3823         272 TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       272 ~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  320 (365)
                         ..   ....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...+
T Consensus       139 ---~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          139 ---IQ---GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             ---EE---ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             ---cc---CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence               11   12359999999999999999999999999999999887553

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.81  E-value=1.8e-19  Score=151.81  Aligned_cols=164  Identities=16%  Similarity=0.288  Sum_probs=114.5

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCC-cceEEEEeCCCcCCC---------CC----Ccee----------EecCCeEEEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQ-AQYFTWAFNNSGTAP---------RP----LTSY----------SIQDGSTSVAR   73 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~-~~~v~W~~~~~~~l~---------~~----~~~~----------~~~~~~~~~l~   73 (365)
                      .+....+.+|+.+.|.|.+.+.|. + .+.|++++.. ..         ..    ....          ...++   .|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~---~L~   80 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHY-MLEWFLTDRS-GARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG---RLV   80 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEE-EEEEEEECTT-CCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC---CEE
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCce-EEEEEEeCCC-ceeEEEEeccccCCccccccccccccccccccCCCc---eEE
Confidence            355677899999999999777775 6 9999987654 22         00    0001          11223   499


Q ss_pred             EccCCCCCCeEEEEEEEeCC-CCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcE-EEEEEE-EecCCC
Q psy3823          74 YTPTSELEYGTLLCWARNEQ-GNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDI-YFDCHI-QANPPY  150 (365)
Q Consensus        74 i~~~~~~d~G~Y~C~a~~~~-~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v-~l~C~~-~~~p~~  150 (365)
                      |.+++.+|+|.|+|.+.+.. +.....+.|.|...      ...|.+...+    ....+.+|+.+ .|.|.+ .+.|.+
T Consensus        81 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~------p~~~~~~~~~----~~~~~~~g~~~~~l~C~~~~~~p~p  150 (231)
T 2pet_A           81 LAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK------PEATEVSPNK----GTLSVMEDSAQEIATCNSRNGNPAP  150 (231)
T ss_dssp             ESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBC------CCCCEEEECC----SSCCTTCCSEEEEEEEEEEEEBSCC
T ss_pred             EcccCcccCceEEEEEEecCCCceEEEEEEEEEec------CCCcEEecCC----cceeecCCCceEEEEEEeECcccCC
Confidence            99999999999999999876 55557788888311      1124433322    22346688887 999999 788887


Q ss_pred             CeeEEEeCCeEEeeCC---CCceEEe------------eceEEEeeecCCCCeEEEEEEEcC
Q psy3823         151 KKLIWTHNGITISNNA---SAGRIIT------------NQTLVLQSVTRHSGGLYACSAINS  197 (365)
Q Consensus       151 ~~i~W~~~~~~l~~~~---~~~~~~~------------~~~l~i~~~~~~d~G~Y~C~~~~~  197 (365)
                      . +.|++++..+....   .......            .+.|.|.....+|+|.|+|.|.|.
T Consensus       151 ~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          151 K-ITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             E-EEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             E-EEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            6 99999999887544   1111111            156888766666799999999994

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.81  E-value=7.5e-20  Score=151.41  Aligned_cols=165  Identities=15%  Similarity=0.226  Sum_probs=110.8

Q ss_pred             EecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEE
Q psy3823          24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFH  103 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~  103 (365)
                      +.+|+.++|.|.+   |.+ .++|+|++.. +...       ......|.|.+++.+|+|.|+|.+.+..   ...+.|.
T Consensus        15 ~~~G~~v~L~C~~---p~~-~i~W~k~g~~-l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~v~   79 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAK-NITWFKDGKM-IGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNK---SKPLQVY   79 (204)
T ss_dssp             CCSSSEEEEEECS---CSS-EEEEEETTEE-EEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSC---CCCEEEE
T ss_pred             ecCCCeEEEEEcC---CCC-EEEEEECCEE-CCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCC---CeeEEEE
Confidence            4689999999987   777 9999999887 5321       1112379999999999999999965422   2345665


Q ss_pred             EEeccccCC----------------------CCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeE
Q psy3823         104 VVKAGECEH----------------------PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGIT  161 (365)
Q Consensus       104 V~~~~~~~~----------------------~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~  161 (365)
                      +.....+..                      ...+|.+ ...    +.....+|++++|.|.  +.|.+. +.|++++..
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----p~~v~~~G~~v~L~C~--g~p~p~-i~W~k~~~~  151 (204)
T 1sy6_A           80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGI-TQT----PYKVSISGTTVILTCP--QYPGSE-ILWQHNDKN  151 (204)
T ss_dssp             EEC-------------------------------------CC----CCEEEEETTEEEEECS--CCCSSC-EEEEETTEE
T ss_pred             EEEeccccccccccccccccccccccccccccccccce-ecC----CceeeecCCcEEEEcC--CCCCCc-eEEEECCEE
Confidence            530000000                      0001111 111    1112238999999998  778777 999999998


Q ss_pred             EeeCCC-CceEEeeceEEEeee-cCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         162 ISNNAS-AGRIITNQTLVLQSV-TRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       162 l~~~~~-~~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      +..... ......+++|.|.++ +..|+|.|+|.|.|..|...+..+.|.+.
T Consensus       152 l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          152 IGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             ESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             CCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence            865322 233445789999999 99999999999999998654455666553

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.81  E-value=7.5e-19  Score=149.95  Aligned_cols=178  Identities=15%  Similarity=0.199  Sum_probs=114.5

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcc----eEEEEeCCCcCCCCCC---------------ceeE---ecCCeEEEEEEc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQ----YFTWAFNNSGTAPRPL---------------TSYS---IQDGSTSVARYT   75 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~----~v~W~~~~~~~l~~~~---------------~~~~---~~~~~~~~l~i~   75 (365)
                      .+....+.+|++++|.|.+.+.|.+.    .+.|++++.. .....               ....   .......+|.|.
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   87 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLT-FDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP   87 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSS-CCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCC-CCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence            34556788999999999976666651    4999997654 22100               0000   001122359999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeE
Q psy3823          76 PTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLI  154 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~  154 (365)
                      +++.+|+|.|+|.+.+..+.....+.|.|         ..+|.+.+.+..     ....|+.+.|.|.+.+ +|.+..+.
T Consensus        88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V---------~~~P~v~~~~~~-----~~~~~~~~~L~C~~~g~~P~pi~v~  153 (248)
T 3pv7_A           88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEV---------VASPASRLLLDQ-----VGMKENEDKYMCESSGFYPEAINIT  153 (248)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEE---------EBCCEEEEECC-------------CEEEEEEEEEBSSCCEEE
T ss_pred             CCCHHHCeEEEEEEEeCCccceeEEEEEE---------ecCCceEEecCC-----ccccCCCcEEEEEEccEECCCeEEE
Confidence            99999999999999998776667888888         567887765432     3456788889999998 77773599


Q ss_pred             EEeCCeEEee--------------CCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC-CcccEEEEE
Q psy3823         155 WTHNGITISN--------------NASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG-GSTPFDLNI  210 (365)
Q Consensus       155 W~~~~~~l~~--------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~s~~~~l~v  210 (365)
                      |+++|..+..              ....+.......|.+.....+|.|.|+|.|.|..+.. .+..+.|.|
T Consensus       154 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          154 WEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             EEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             EEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            9998853210              0111222234578888889999999999999988753 223344444

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.81  E-value=2.1e-18  Score=147.64  Aligned_cols=171  Identities=16%  Similarity=0.223  Sum_probs=116.8

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC-----CcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP-----QAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p-----~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~   80 (365)
                      +..+.+.+|++++|.|.+.+.|     .+ .+.|+|++... +            ....+......+....|.|.+++.+
T Consensus        41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  119 (252)
T 3bkj_L           41 PLSLPVNLGEQASISCRSSQSIVHSNGHT-YLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAE  119 (252)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCB-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CceEEEeCCCcEEEEEEcCCCccccCCCC-cEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcc
Confidence            4567789999999999987777     46 99999975310 1            0011112222334458999999999


Q ss_pred             CCeEEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEEeC
Q psy3823          81 EYGTLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWTHN  158 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~  158 (365)
                      |+|.|+|.+.+..+... ....|.|...      ..+|.+.+.+..    ....+|+.++|.|.+.+. |++..+.|+++
T Consensus       120 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~------~~~P~v~~~~~~----~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  189 (252)
T 3bkj_L          120 DLGVYYCFQASLVPLTFGAGTKLELKRA------DAAPTVSIFPPS----SEQLTSGGASVVCFLNNFYPKDINVKWKID  189 (252)
T ss_dssp             GCEEEEEEECSBSSCEECCCEEEEECCC------CBCCEEEEECCC----HHHHHHTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cCEEEEEEEEcCCccEECCCEEEEEeCC------CcCcEEEEeCCC----hhhcCCCcEEEEEEEeeEeCCCcEEEEEEC
Confidence            99999999988655322 4456777211      236776664432    234478999999999984 44445999999


Q ss_pred             CeEEeeC---------CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         159 GITISNN---------ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       159 ~~~l~~~---------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      |..+...         ...+.......|.|.++..+|+|.|+|.|.|....
T Consensus       190 g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          190 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             TEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            9987532         01111122356899999999999999999997653

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.80  E-value=8.6e-19  Score=146.39  Aligned_cols=169  Identities=12%  Similarity=0.171  Sum_probs=114.5

Q ss_pred             EEEEecCCcEEEEEEeCCC-CCcceEEEEeCCCcC-C--------------CCC--CceeEecCCeEEEEEEccCCCCCC
Q psy3823          21 IYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGT-A--------------PRP--LTSYSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~-l--------------~~~--~~~~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      .+.+.+|+.++|.|.+.+. |.+ .+.|+|..... .              ...  .+..........+|.|.+++.+|+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTY-TIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDE   87 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTC-CEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cEEECCCCcEEEEEECCCCCCCc-EEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccC
Confidence            6788999999999998777 788 99999943110 0              000  011111133445799999999999


Q ss_pred             eEEEEEEEeCCC-----CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEE
Q psy3823          83 GTLLCWARNEQG-----NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWT  156 (365)
Q Consensus        83 G~Y~C~a~~~~~-----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~  156 (365)
                      |.|+|.+.+..+     .....+.|.|...     +..+|.+.+.+..    .....|+.++|.|.+.+ .|.+..+.|+
T Consensus        88 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~-----~~~~P~~~~~~~~----~~~~~~~~v~L~C~~~g~~p~~~~v~W~  158 (218)
T 3s96_B           88 AIYICGVGDTIKEQFVYVFGGGTKVTVLGQ-----PKSTPTLTVFPPS----SEELKENKATLVCLISNFSPSGVTVAWK  158 (218)
T ss_dssp             EEEEEEEEEEETTEEEEEECCCEEEEEESC-----CCBCCEEEEECCC----HHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEEEEecCCCCceeEEEcCcEEEEEecC-----CCCCceEEeeCCC----cccccCCcEEEEEEECcccCCCeEEEEE
Confidence            999999998775     2235677888311     1256776665432    24556799999999998 5666469999


Q ss_pred             eCCeEEeeCCCC-------ceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         157 HNGITISNNASA-------GRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       157 ~~~~~l~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      ++|..+......       +.......|.|.....+|+|.|+|.|.|..+
T Consensus       159 k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~  208 (218)
T 3s96_B          159 ANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGD  208 (218)
T ss_dssp             ETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTE
T ss_pred             ECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCC
Confidence            999988642111       1111134577888888899999999999875

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.80  E-value=1.1e-18  Score=146.65  Aligned_cols=174  Identities=12%  Similarity=0.081  Sum_probs=108.2

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCc--ceEEEEeCCCcCCC-----CC------------CceeEe---cCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQA--QYFTWAFNNSGTAP-----RP------------LTSYSI---QDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~--~~v~W~~~~~~~l~-----~~------------~~~~~~---~~~~~~~l~i~~~   77 (365)
                      ..+.+.+|++++|.|.+.+.+.+  ..++|+|++.. ..     .+            ......   ......+|.|.++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~-~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   90 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLR-QVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV   90 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTC-CEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCC-ceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence            34668899999999996554443  37999998753 11     00            000111   1123458999999


Q ss_pred             CCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEE
Q psy3823          78 SELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWT  156 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~  156 (365)
                      +.+|+|.|+|.|.|..+.....+.+.+.         .++....      ....+.+|+.+.|.|.+.+. |.|. |.|+
T Consensus        91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~---------~~~~~~~------~~~~~~~g~~v~l~c~~~g~~P~p~-i~W~  154 (226)
T 4f80_A           91 TASDSGKYLCYFQDGDFYEKALVELKVA---------ALGSDLH------VDVKGYKDGGIHLECRSTGWYPQPQ-IQWS  154 (226)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEE---------BCCCCCE------EEEEEEETTEEEEEEEEEEEBSCCE-EEEE
T ss_pred             chHHCeeEEEEEECCCcEEEEEEEEeec---------cceeccc------ceeeeccCCceeeEEEeccCCCCCE-EEEE
Confidence            9999999999999987766666666552         1111111      12356789999999999985 6666 9999


Q ss_pred             eCCeEE-eeCCCCceEEeec---eEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         157 HNGITI-SNNASAGRIITNQ---TLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       157 ~~~~~l-~~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      +++..+ ...........++   .+.+..++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       155 k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~-~~~~v~v~  212 (226)
T 4f80_A          155 NNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLE-KTASISIA  212 (226)
T ss_dssp             CTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEE-EEEEECCC
T ss_pred             ECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeE-EEEEEEEC
Confidence            865433 3222211222222   234556788999999999999998655 45555554

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.80  E-value=2.1e-19  Score=149.52  Aligned_cols=172  Identities=16%  Similarity=0.253  Sum_probs=116.9

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc-CCC------------CCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-TAP------------RPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~-~l~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +....+.+|+.++|.|.+.+.|.+ .+.|+|+... .+.            ...+...........|.|.+++.+|+|.|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   84 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKN-FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGS-CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCC-eEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEE
Confidence            566788999999999998888888 8999986421 010            01111222233455899999999999999


Q ss_pred             EEEEEeCCCCC---cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEEeCCeE
Q psy3823          86 LCWARNEQGNQ---RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWTHNGIT  161 (365)
Q Consensus        86 ~C~a~~~~~~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~~~~  161 (365)
                      +|.+.+.....   .....|.|...     +..+|.+.+.+.    .....+|+.++|.|.+.+. |+...+.|+++|..
T Consensus        85 ~C~~~n~~~~~~~~~~~~~l~V~~~-----~~~~p~v~~~~~----~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  155 (212)
T 1nfd_E           85 YCLSSYGDNNDLVFGSGTQLTVLRG-----PKSSPKVTVFPP----SPEELRTNKATLVCLVNDFYPGSATVTWKANGAT  155 (212)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEECC-----CCBCCEEECCCC----CHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEE
T ss_pred             EEEEEcccCcccccCCceEEEEccC-----CCCCCEEEeeCC----chHhccCCceEEEEEEEeeECCccEEEEEECCeE
Confidence            99999732211   24455666211     124566554332    2235579999999999987 44245999999998


Q ss_pred             EeeCCCCc-------eEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         162 ISNNASAG-------RIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       162 l~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      +.......       .....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          156 INDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             ECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             cCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            86432110       0122456889999999999999999998764

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.79  E-value=6.5e-20  Score=148.11  Aligned_cols=156  Identities=13%  Similarity=0.167  Sum_probs=109.2

Q ss_pred             ceecCCcEEEEEE-EEecCCCCeeEEEeCCeEEee---------CCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         131 VLNEGVDIYFDCH-IQANPPYKKLIWTHNGITISN---------NASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       131 ~~~~g~~v~l~C~-~~~~p~~~~i~W~~~~~~l~~---------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      ...+|++++|.|. .....+...|.|++++..+..         .........+++|.|.+++..|+|.|+|.+.|..|.
T Consensus         7 ~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~   86 (176)
T 1hng_A            7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT   86 (176)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             EEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCCC
Confidence            4678999999994 322223334999999976631         111222234677999999999999999999999887


Q ss_pred             C-CcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCC
Q psy3823         201 G-GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDG  279 (365)
Q Consensus       201 ~-~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~  279 (365)
                      . .+..+.|.|.          .++.    .+. + ...+..+.|.|.+.+.|+|. +.|+++|....         ...
T Consensus        87 ~~~~~~~~l~V~----------~~~~----~p~-i-~~~~~~v~L~C~~~g~p~p~-i~W~~~g~~l~---------~~~  140 (176)
T 1hng_A           87 RILNKALDLRIL----------EMVS----KPM-I-YWECSNATLTCEVLEGTDVE-LKLYQGKEHLR---------SLR  140 (176)
T ss_dssp             EEEEEEEEEEEE----------CCCC----CCE-E-EEETTTTEEEEECSSCSSCE-EEEEETTEEEE---------EES
T ss_pred             EEEEEEEEEEEe----------CCCC----CCE-E-EecCCcEEEEEEecCCCCcE-EEEEECCEECC---------CCC
Confidence            5 3456777777          3321    011 1 22345699999999999998 99999875321         111


Q ss_pred             CEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         280 STSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       280 ~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      .   +.|..+..+|+|.|+|.|.|..|..+....|.
T Consensus       141 ~---~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  173 (176)
T 1hng_A          141 Q---KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN  173 (176)
T ss_dssp             S---SEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             c---EEEEEEEccCCeEEEEEEEecCCCceeccccc
Confidence            1   34446778999999999999999887766554

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.79  E-value=5.4e-19  Score=147.12  Aligned_cols=170  Identities=16%  Similarity=0.189  Sum_probs=113.6

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCC--eEE----------eeCCCCceEEe----eceEEEeeecCCCCeEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNG--ITI----------SNNASAGRIIT----NQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~--~~l----------~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+.+|+++.|.|.+.+.|.+. +.|++++  ..+          ......+....    ..+|.|.+++.+|+|.|+|.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3d9a_L           11 LSVTPGNSVSLSCRASQSIGNN-LHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (213)
T ss_dssp             EEECTTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEeCCCcEEEEEECCCCCCCC-EEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEe
Confidence            4678999999999999888776 9999742  221          00001122221    34899999999999999999


Q ss_pred             EEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCCceeEEEeCCCCCCCC-CC
Q psy3823         194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPR-PL  271 (365)
Q Consensus       194 ~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~-~~  271 (365)
                      +.+..+........|.|...       ..+|.+........ ...|+.++|.|.+.+ .|++..+.|+++|...... ..
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~-------~~~p~v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  161 (213)
T 3d9a_L           90 QSNSWPYTFGGGTKLEIKRA-------DAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  161 (213)
T ss_dssp             ECSSSSCEECCCEEEEECCC-------CBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred             eecCCcceeCCCEEEEEecC-------CCCceeEeECCChh-hcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeee
Confidence            99887654434556777610       12565554222222 347899999999988 5555249999988643322 11


Q ss_pred             ceeE--eeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         272 TSYS--IQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       272 ~~~~--~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ....  ..++.   .+.|.|.++..+|+|.|+|.|.|.....
T Consensus       162 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          162 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             cCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            1111  11222   3579999999999999999999987665

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.79  E-value=4.6e-19  Score=148.49  Aligned_cols=178  Identities=19%  Similarity=0.244  Sum_probs=119.5

Q ss_pred             cceecCCcEEEEEEEEecCC----CCeeEEEeCCeEEe-----------eCCCCceEEe-------eceEEEeeecCCCC
Q psy3823         130 SVLNEGVDIYFDCHIQANPP----YKKLIWTHNGITIS-----------NNASAGRIIT-------NQTLVLQSVTRHSG  187 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~----~~~i~W~~~~~~l~-----------~~~~~~~~~~-------~~~l~i~~~~~~d~  187 (365)
                      ..+.+|++++|.|.+.+.+.    ...+.|++++....           .....+....       +.+|.|.+++..|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            35789999999999887653    24499999764321           1111112211       56799999999999


Q ss_pred             eEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEE-eeeCCCceeEEEeCCCCC
Q psy3823         188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSDT  266 (365)
Q Consensus       188 G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~W~~~~~~~  266 (365)
                      |.|+|.+.+....  +..+.|.|..+       ...|.+......  .+..|+.+.|.|.+ .+.|.+. +.|++++...
T Consensus        85 G~Y~C~~~~~~~~--~~~~~l~V~~~-------~~~p~i~~~~~~--~v~~G~~~~l~C~~~~g~P~~~-v~W~~~~~~~  152 (222)
T 4i0k_A           85 GSYTCFVSIQDFD--SAAVSLQVAAP-------YSKPSMTLEPNK--DLRPGNMVTITCSSYQGYPEAE-VFWKDGQGVP  152 (222)
T ss_dssp             SCEEEEEEECCCC--CCCCCCCCCBC-------CCCCEEECCC-------CCSEEEEEEEEEEEBSCCE-EEEECTTSCB
T ss_pred             EEEEEEEEeCCCc--eEEEEEEEEcC-------CCCCcEEeCCCc--eecCCceEEEEEecccccCCCe-EEEEcCCCcc
Confidence            9999999986322  23445555510       123444433322  26789999999999 7889998 9999854422


Q ss_pred             CCCCCcee--EeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         267 APRPLTSY--SIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       267 ~~~~~~~~--~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      ........  ...++..+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  207 (222)
T 4i0k_A          153 LTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ  207 (222)
T ss_dssp             CCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred             CCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence            22211111  134555677899999999999999999999999998888887654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.79  E-value=1.8e-19  Score=146.97  Aligned_cols=156  Identities=15%  Similarity=0.280  Sum_probs=105.9

Q ss_pred             EecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEcc-CCCCCCeEEEEEEEeCCCCCcccEEE
Q psy3823          24 ALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTP-TSELEYGTLLCWARNEQGNQRTPCTF  102 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~a~~~~~~~~~~~~l  102 (365)
                      ..+|+.+.|.|.+.+ | + .++|+|++.. +...      .+.   .|.|.+ ++.+|+|.|+|.|.|..+.....+.+
T Consensus        11 ~~~G~~v~L~C~~~~-~-~-~i~W~k~g~~-l~~~------~~~---~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~   77 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-D-E-NLKWEKNGQE-LPQK------HDK---HLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKA   77 (186)
T ss_dssp             EEETTEEEEECSSCC-C-T-TCEEEETTEE-ECSC------CCS---EEEEESCCTTTSCEEEEEECSSCCCCCCEEECC
T ss_pred             EeCCcEEEEEEeCCC-C-C-ceEEEECCEE-CCCC------CCC---EEEECCCCccccCEEEEEEEEeCCCcEEEEEEE
Confidence            368999999999765 3 4 5999999988 6542      122   799999 99999999999999988875444444


Q ss_pred             EEEeccccC---------CCCCCCeEEEE--cCC-ccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCce
Q psy3823         103 HVVKAGECE---------HPVDKPSVQIK--LGR-NLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR  170 (365)
Q Consensus       103 ~V~~~~~~~---------~~~~~p~~~~~--~~~-~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~  170 (365)
                      .|.......         ....+|.+...  +.. ......+.+|+.+.|.|.+   |.+. +.|++||..+.....   
T Consensus        78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~-i~W~k~g~~i~~~~~---  150 (186)
T 1jbj_A           78 RVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKT-IKWLKDGSIISPLNA---  150 (186)
T ss_dssp             CCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSC-EEEEETTEECCCSSC---
T ss_pred             EEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCe-EEEEECCEECcccCC---
Confidence            442110000         00001110000  000 0000134489999999987   6666 999999999864221   


Q ss_pred             EEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         171 IITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       171 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                        ....|.|.++..+|+|.|+|.|.|..|..
T Consensus       151 --~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 --TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             --CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             --CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence              45789999999999999999999987743

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.79  E-value=1.8e-18  Score=144.87  Aligned_cols=177  Identities=13%  Similarity=0.213  Sum_probs=112.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCc----ceEEEEeCCCcC--------CCCC------CceeEec---CCeEEEEEEccC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQA----QYFTWAFNNSGT--------APRP------LTSYSIQ---DGSTSVARYTPT   77 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~----~~v~W~~~~~~~--------l~~~------~~~~~~~---~~~~~~l~i~~~   77 (365)
                      +..+.+.+|++++|.|...+.|..    ..+.|++++...        ....      .......   ......|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            455678999999999997655521    289999975210        1100      1111111   123458999999


Q ss_pred             CCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe
Q psy3823          78 SELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH  157 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~  157 (365)
                      +.+|+|.|+|.+.+ .+.....+.|.|...      ...|.....       ..+.+|+.+.|.|.+.|+|.+. +.|++
T Consensus        88 ~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~------~~~~~~~~~-------~~~~~g~~v~L~C~~~g~P~p~-i~W~~  152 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGADYKRITVKVNAP------YNKINQRIL-------VVDPVTSEHELTCQAEGYPKAE-VIWTS  152 (222)
T ss_dssp             CGGGCEEEEEEEES-SSEEEEEEEEEEEBC------CCCCEEEEE-------EEETTTTEEEEEEEEEEBSCCE-EEEEE
T ss_pred             ccccCeEEEEEEEe-CCCceeEEEEEEECC------CCCCCceee-------eeecCCCcEEEEEEecCCCCCe-EEEEE
Confidence            99999999999998 444456788888311      112222211       1456899999999999988876 99999


Q ss_pred             C-CeEEeeCCCCc-eEEeeceE---EEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         158 N-GITISNNASAG-RIITNQTL---VLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       158 ~-~~~l~~~~~~~-~~~~~~~l---~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      + +..+....... ....++.+   .+..+...|.|.|+|.|.|..|... ..+.|.|.
T Consensus       153 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~-~~~~l~v~  210 (222)
T 3sbw_C          153 SDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEEN-HTAELVIP  210 (222)
T ss_dssp             TTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEE-EEEEEECC
T ss_pred             CCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCcccee-eEEEEEec
Confidence            8 65553211100 00112222   2224567899999999999998655 56667766

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.79  E-value=4.8e-19  Score=157.56  Aligned_cols=173  Identities=13%  Similarity=0.138  Sum_probs=112.9

Q ss_pred             EEEecCCcEEEEEEeCCCCCc-ceEEEEeCCCcCCCCCCceeEe--cCC---eEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          22 YGALRNEQVLVSCTVDANPQA-QYFTWAFNNSGTAPRPLTSYSI--QDG---STSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~~~~l~~~~~~~~~--~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ..+.+|+.+.|.|.+.+.|.+ ..++|++++.. +.........  .++   ..+.|.|.....+|.|.|+|.|.|..+.
T Consensus       127 ~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~-l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          127 ARATPQHTVSFTCESHGFSPRDITLKWFKNGNE-LSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             SCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEE-CCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             cccCCCCEEEEEEEEeCccCCCcEEEEEECCEE-ccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence            456889999999997666654 38999999988 6544322111  111   2235888888888889999999998776


Q ss_pred             Cc---ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC-CeeEEEeCCeEEeeCCCCceE
Q psy3823          96 QR---TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY-KKLIWTHNGITISNNASAGRI  171 (365)
Q Consensus        96 ~~---~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~i~W~~~~~~l~~~~~~~~~  171 (365)
                      ..   ....+.+       ....+|.+.+.+.      .+.+|+.++|.|.+.|.+++ ..+.|++||..+.........
T Consensus       206 ~~~~~~~~~~~~-------~v~~~P~i~~~~~------~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~  272 (327)
T 2wng_A          206 GDPLRGTANLSE-------TIRVPPTLEVTQQ------PVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVT  272 (327)
T ss_dssp             SCCEEEEEEGGG-------TBCBCCEEEEEEE------CCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCE
T ss_pred             CCcccceEEecc-------ccCCCCEEEEecC------CcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceE
Confidence            32   2233321       0045777766542      26799999999999985444 369999999998643221111


Q ss_pred             -------EeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         172 -------ITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       172 -------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                             .....|.|..+..+|+|.|+|.|.|..+...++.+.+
T Consensus       273 ~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~  316 (327)
T 2wng_A          273 ENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDL  316 (327)
T ss_dssp             ECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEEC
T ss_pred             ECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEE
Confidence                   1124588888899999999999999998776554433

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.79  E-value=6e-18  Score=145.11  Aligned_cols=178  Identities=14%  Similarity=0.109  Sum_probs=120.8

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCC--cCCC-----------------CCCceeEe--cCCeEEEEEEc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNS--GTAP-----------------RPLTSYSI--QDGSTSVARYT   75 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~--~~l~-----------------~~~~~~~~--~~~~~~~l~i~   75 (365)
                      +....+.+|++++|.|.+.+.|  .+ .+.|+|++.  . +.                 ...+....  .......|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~-~v~W~r~~~~~~-~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSY-WMHWVKQRPGRG-LEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS   84 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGS-CEEEEEEETTTE-EEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCc-eEEEEEECCCCC-cEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence            4456789999999999987765  56 999999532  1 10                 01111111  12345689999


Q ss_pred             cCCCCCCeEEEEEEEeCCCC---C--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC
Q psy3823          76 PTSELEYGTLLCWARNEQGN---Q--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY  150 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~~---~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  150 (365)
                      +++.+|+|.|+|.+.+..+.   .  ...+.|.|         ..+|.+...+    ....+.+|++++|.|.+.+.+++
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V---------~~~~~v~~~p----~~~~v~~G~~v~L~C~~~~~~~~  151 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTV---------SSDIELTQTP----LSLPVSLGDQASISCRSSQSIVH  151 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEE---------CCCCCEEEEC----SEEEECTTCCEEEEEEESSCCBC
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeee---------cccccEEecC----cEEEEecCCcEEEEeEecCcccc
Confidence            99999999999999987653   1  14567888         4556554433    23467899999999999987765


Q ss_pred             ----CeeEEEe--CCeEEee----------CCCCceEE----eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         151 ----KKLIWTH--NGITISN----------NASAGRII----TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       151 ----~~i~W~~--~~~~l~~----------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                          ..+.|++  +|..+..          ....+...    ...+|.|.+++.+|+|.|+|.+.+...........|.|
T Consensus       152 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V  231 (256)
T 1nqb_A          152 SNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEI  231 (256)
T ss_dssp             TTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             cccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEE
Confidence                2499999  5654421          00111211    13579999999999999999999865443334556777


Q ss_pred             e
Q psy3823         211 N  211 (365)
Q Consensus       211 ~  211 (365)
                      .
T Consensus       232 ~  232 (256)
T 1nqb_A          232 K  232 (256)
T ss_dssp             C
T ss_pred             E
Confidence            6

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.79  E-value=1.2e-19  Score=147.86  Aligned_cols=154  Identities=17%  Similarity=0.298  Sum_probs=105.0

Q ss_pred             eecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEee-ecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQS-VTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      ..+|+++.|.|.+.+ ++ . +.|+++|..+...       .+.+|.|.+ ++.+|+|.|+|.|.|..|... ..+.+.|
T Consensus        11 ~~~G~~v~L~C~~~~-~~-~-i~W~k~g~~l~~~-------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~-~~~~~~v   79 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-DE-N-LKWEKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTY-LYLKARV   79 (186)
T ss_dssp             EEETTEEEEECSSCC-CT-T-CEEEETTEEECSC-------CCSEEEEESCCTTTSCEEEEEECSSCCCCCC-EEECCCC
T ss_pred             EeCCcEEEEEEeCCC-CC-c-eEEEECCEECCCC-------CCCEEEECCCCccccCEEEEEEEEeCCCcEE-EEEEEEE
Confidence            468999999999876 43 4 9999999998753       235899999 999999999999999888632 3333333


Q ss_pred             eeeeeccc--------ccCCCCceecC------ccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEe
Q psy3823         211 NKMVNLIF--------NSIDEPVCKQS------QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSI  276 (365)
Q Consensus       211 ~~~~~~~~--------~~~~~p~~~~~------~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~  276 (365)
                      .....+..        ....+|.+...      ......+..|+.+.|.|.+   |.|. +.|+++|......       
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~-i~W~k~g~~i~~~-------  148 (186)
T 1jbj_A           80 GSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKT-IKWLKDGSIISPL-------  148 (186)
T ss_dssp             CSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSC-EEEEETTEECCCS-------
T ss_pred             ecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCe-EEEEECCEECccc-------
Confidence            21000000        00001111000      0011124589999999998   7887 9999998754321       


Q ss_pred             eCCCEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         277 QDGSTSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       277 ~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                       ......|.|.++..+|+|.|+|.|.|..|..
T Consensus       149 -~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          149 -NATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             -SCCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             -CCCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence             1123358999999999999999999999876

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.79  E-value=5.8e-18  Score=144.31  Aligned_cols=186  Identities=10%  Similarity=0.059  Sum_probs=117.2

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-C-----------------CCCCceeEe--cCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-A-----------------PRPLTSYSI--QDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l-----------------~~~~~~~~~--~~~~~~~l~i~~~   77 (365)
                      ....+.+|++++|.|.+.+.|  .+ .+.|+|+.... +                 ....+....  ......+|.|.++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSY-AMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCc-eEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            456789999999999977776  56 89999953210 0                 001111111  1234568999999


Q ss_pred             CCCCCeEEEEEEEeCCCC--CcccEEEEEEeccccC------CCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC
Q psy3823          78 SELEYGTLLCWARNEQGN--QRTPCTFHVVKAGECE------HPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP  149 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~--~~~~~~l~V~~~~~~~------~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  149 (365)
                      +.+|+|.|+|.+.+..+.  ......|.|.......      ....+|.+...+    ....+.+|++++|.|.+.+.+.
T Consensus        89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~G~~v~L~C~~~~~~~  164 (247)
T 2ghw_B           89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSP----ATLSLSPGERATLSCRASQSVR  164 (247)
T ss_dssp             CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEEC----SEEEECTTSCEEEEEEESSCCT
T ss_pred             CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccC----CEEEecCCCcEEEEEEeCCCcc
Confidence            999999999999987222  1244677773210000      000123333322    2345789999999999999887


Q ss_pred             CCeeEEEe--CCeEEee----------CCCCceEE----eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         150 YKKLIWTH--NGITISN----------NASAGRII----TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       150 ~~~i~W~~--~~~~l~~----------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      +. +.|++  ++..+..          ....+...    ...+|.|.+++.+|+|.|+|.+.+...........|.|.
T Consensus       165 ~~-v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          165 SN-LAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             TC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ce-EEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            76 99999  5543311          00111211    134799999999999999999998654433344455554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.79  E-value=3.4e-19  Score=159.86  Aligned_cols=180  Identities=13%  Similarity=0.158  Sum_probs=99.6

Q ss_pred             ceEEEEecCCcEEEEEEe-----CCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          19 QRIYGALRNEQVLVSCTV-----DANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~-----~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      +....+.+|+.+.|.|..     .+.|.+ .++|++++.. +..... ......   .|.|.+++.+|+|.|+|.|.+..
T Consensus       127 ~~~~~~~~g~~~~l~C~~~~~~~~g~p~~-~v~W~k~~~~-l~~~~~-~~~~~~---~L~i~~v~~~d~G~Y~C~a~n~~  200 (349)
T 4dep_C          127 PVHKLYIEYGIQRITCPNVDGYFPSSVKP-TITWYMGCYK-IQNFNN-VIPEGM---NLSFLIALISNNGNYTCVVTYPE  200 (349)
T ss_dssp             CEEEEETTCSEEEEECCSCTTSSCTTSCC-EEEEEETTEE-CCSCSS-EEEETT---EEEEESCCGGGCEEEEEEEEEEE
T ss_pred             CcceeeecCccEEEEcCCCcccccCCCCc-eEEEeeCCEE-CCCccc-eeecCC---EEEEeeeeecCCcEEEEEEEEee
Confidence            345577899999999974     668888 9999999988 654322 222233   79999999999999999999976


Q ss_pred             -CCC---cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe----cCCCCeeEEEeCCeEEeeC
Q psy3823          94 -GNQ---RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA----NPPYKKLIWTHNGITISNN  165 (365)
Q Consensus        94 -~~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~----~p~~~~i~W~~~~~~l~~~  165 (365)
                       +..   ...+.|.|......   ..+|.+......  ....+.+|+.++|.|.+.+    .|.+. +.|+++|..+...
T Consensus       201 ~g~~~~~~~~~~l~v~~~~~~---~~~p~i~~~~~~--~~~~v~~G~~v~l~C~~~~~~~g~p~p~-v~W~~~g~~l~~~  274 (349)
T 4dep_C          201 NGRTFHLTRTLTVKVVGSPKN---AVPPVIHSPNDH--VVYEKEPGEELLIPCTVYFSFLMDSRNE-VWWTIDGKKPDDI  274 (349)
T ss_dssp             TTEEEEEEEEEEEEEECCGGG---CCSCEEC------------------CCCEEEEECCCTTCCCE-EEEESSCC-----
T ss_pred             CCEEEEEEEEEEEEEEccCCC---CCCCeEecCCCc--eeEEEecCCcEEEEEEEEEccCCCCCCE-EEEEECCEEcccc
Confidence             443   36677777321100   114544322211  1115778999999999994    46666 9999999887651


Q ss_pred             C-CCc-----------eEEeeceEEEeeecCCCC-eEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         166 A-SAG-----------RIITNQTLVLQSVTRHSG-GLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       166 ~-~~~-----------~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      . ...           ......+|.|.++..+|+ |.|+|.|.|..|... ..+.|.|.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~-~~~~l~v~  332 (349)
T 4dep_C          275 TIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVA-KAAKVKQK  332 (349)
T ss_dssp             ---CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEE-EECC----
T ss_pred             CCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEE-EEEEEeee
Confidence            1 111           112245699999999999 999999999998655 44556665

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.79  E-value=1.7e-18  Score=143.90  Aligned_cols=170  Identities=13%  Similarity=0.182  Sum_probs=112.6

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeC--CeEE---e-------eCCCCceEEe----eceEEEeeecCCCCeEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHN--GITI---S-------NNASAGRIIT----NQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~--~~~l---~-------~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+.+|++++|.|.+.+.|.+. +.|+++  |..+   .       .....+....    ..+|.|.+++.+|+|.|.|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~-v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (210)
T 1lk3_L           10 LTVSPGEKLTISCKASESVTSR-MHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (210)
T ss_dssp             EEECTTSCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEcCCCCEEEEeeCCCccCCC-EEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEE
Confidence            4678999999999999887776 999983  2221   0       0001122211    34899999999999999999


Q ss_pred             EEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEeCCCCCCCC-CC
Q psy3823         194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPR-PL  271 (365)
Q Consensus       194 ~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~-~~  271 (365)
                      +.+..+........|.|...       ..+|.+........ +..|+.++|.|.+.+. |++..+.|+++|...... ..
T Consensus        89 ~~~~~~~~~~~~~~l~V~~~-------~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  160 (210)
T 1lk3_L           89 QSWNGPLTFGAGTKLELKRA-------DAAPTVSIFPPSTE-QLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLD  160 (210)
T ss_dssp             ECSSSSCEECCCEEEEECCC-------CBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEE
T ss_pred             EEcCCCceeCCCEEEEEcCC-------CcCCeEEEECCchh-hccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceE
Confidence            99887644334456777610       02455543222212 3479999999999875 444249999998754322 11


Q ss_pred             ceeE--eeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         272 TSYS--IQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       272 ~~~~--~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ....  ..++.   .+.|.|.++..+|+|.|+|.|.|.....
T Consensus       161 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          161 SVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             ccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            1111  12222   3479999999999999999999987654

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.78  E-value=7.5e-18  Score=138.09  Aligned_cols=158  Identities=15%  Similarity=0.216  Sum_probs=107.6

Q ss_pred             CceEEEEecCCcEEEEEEeCC-CCCcceEEEEeCCCcCCC---CCC---------------ceeEecCCeEEEEEEccCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGTAP---RPL---------------TSYSIQDGSTSVARYTPTS   78 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~l~---~~~---------------~~~~~~~~~~~~l~i~~~~   78 (365)
                      .+..+.+.+|++++|.|...+ .+.+ .+.|++++.. +.   ...               +.....+   .+|.|.+++
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~v~   78 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVN-FITWLFNETS-LAFIVPHETKSPEIHVTNPKQGKRLNFTQS---YSLQLSNLK   78 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCC-EEEEEETTEE-EEEEECCSSSCCEEEECCHHHHTTEEECTT---CCEEECSCC
T ss_pred             CCeEEEEEecCeEEEeccCCCccccc-EEEEEECCEE-EEEEecccCCCCceeecCccccccEEECCC---eEEEECCCC
Confidence            456778899999999999654 4456 9999998753 31   100               0011122   379999999


Q ss_pred             CCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCC-cEEEEEEEEecCCCCeeEEEe
Q psy3823          79 ELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV-DIYFDCHIQANPPYKKLIWTH  157 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~-~v~l~C~~~~~p~~~~i~W~~  157 (365)
                      .+|+|.|+|.+.+..+.....+.|.|...      ...|.+....      .....|. .++|.|.+.+.+++..+.|++
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~------~~~p~i~~~~------~~~~~g~~~v~L~C~~~g~~p~p~i~W~~  146 (193)
T 2if7_A           79 MEDTGSYRAQISTKTSAKLSSYTLRILRQ------LRNIQVTNHS------QLFQNMTCELHLTCSVEDADDNVSFRWEA  146 (193)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEECC------CEEEEEEECC------C---CSSEEEEEEEEEESCCTTCEEEEEE
T ss_pred             cccCceEEEEEEecCCCeEEEEEEEEEcc------CCCCeEecCc------eeecCCCceEEEEEEEecCCCceEEEEEe
Confidence            99999999999988776556788888310      1123332211      1233465 899999999865444499999


Q ss_pred             CCeEEeeCCCCceEEeeceEEEeeecCC-CCeEEEEEEEcCCCCC
Q psy3823         158 NGITISNNASAGRIITNQTLVLQSVTRH-SGGLYACSAINSQGEG  201 (365)
Q Consensus       158 ~~~~l~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~  201 (365)
                      +|..+..         ...|.|.....+ |+|.|+|.|.|..|..
T Consensus       147 ~g~~l~~---------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          147 LGNTLSS---------QPNLTVSWDPRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             TTEEEES---------SSEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred             CCEEcCC---------CCeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence            9987642         235666655554 8999999999998854

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.78  E-value=3.5e-19  Score=150.46  Aligned_cols=171  Identities=15%  Similarity=0.166  Sum_probs=96.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C----------CC--CCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A----------PR--PLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l----------~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +....+.+|++++|.|.+.+.|.+ .+.|+|++... +          ..  ..+......+....|.|.+++.+|+|.|
T Consensus        30 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  108 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCITSTDIDD-DMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADY  108 (233)
T ss_dssp             CSBC-------CCEEEEEEEEESS-CEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEE
T ss_pred             CCeEEEecCCCEEEEEecCCcCCC-eEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEE
Confidence            445668899999999997777777 89999965320 1          00  0111111122344799999999999999


Q ss_pred             EEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecC-CCCeeEEEeCCeEEe
Q psy3823          86 LCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITIS  163 (365)
Q Consensus        86 ~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~~i~W~~~~~~l~  163 (365)
                      +|.+.+..+... ....|.|...      ..+|.+.+.+..    ....+|+.++|.|.+.+.+ ++..+.|+++|..+.
T Consensus       109 ~C~~~~~~~~~~~~~~~l~V~~~------~~~p~v~~~~~~----~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~  178 (233)
T 3bqu_C          109 YCLQSDNLPYTFGGGTNLEIKRA------DAAPTVSIFPPS----SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  178 (233)
T ss_dssp             EEEECSSSSCCBCCCCBC---CC------CBCCEEEEECCC----HHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----
T ss_pred             EEEEecCCceeecCCEEEEEeCC------CCCCEEEEeCCC----HHhhcCCceEEEEEEccccCCceEEEEEECCeeCC
Confidence            999987665332 3345565210      236776665432    2344799999999999854 443599999998775


Q ss_pred             eC---------CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         164 NN---------ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       164 ~~---------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      ..         ...+.......|.|.....+|+|.|+|.|.|....
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          179 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            42         01111223457889999999999999999987543

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.78  E-value=2e-17  Score=142.46  Aligned_cols=157  Identities=17%  Similarity=0.196  Sum_probs=113.7

Q ss_pred             ceecCCcEEEEEEEEe-cCCC-CeeEEEeCCeEEeeCCCCceEEeeceEEEeee---cCCCCeE--EEEEEEcCCCCCCc
Q psy3823         131 VLNEGVDIYFDCHIQA-NPPY-KKLIWTHNGITISNNASAGRIITNQTLVLQSV---TRHSGGL--YACSAINSQGEGGS  203 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~-~p~~-~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~---~~~d~G~--Y~C~~~~~~~~~~s  203 (365)
                      .+.+|+.++|.|.+.+ .|.+ ..+.|+++|..+..    ........+.+...   +..|+|.  |+|.+.|..+... 
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~-   88 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE-   88 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEE-
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcE-
Confidence            6789999999999998 6654 24999999988753    23333456666655   7788875  9999999887644 


Q ss_pred             ccEEEEEeeeeecccccCC--CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCE
Q psy3823         204 TPFDLNINKMVNLIFNSID--EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGST  281 (365)
Q Consensus       204 ~~~~l~v~~~~~~~~~~~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~  281 (365)
                      ..+.|.|.          .  +|.+....   ..+.+|+.+.|.|.+.  |.+. +.|  +|....         ..+..
T Consensus        89 ~~~~l~V~----------~~p~p~~~~~~---~~v~~G~~v~l~C~~~--p~~~-i~W--~g~~~~---------~~~~~  141 (265)
T 2oz4_A           89 TLQTVTIY----------SFPAPNVILTK---PEVSEGTEVTVKCEAH--PRAK-VTL--NGVPAQ---------PLGPR  141 (265)
T ss_dssp             EEEEEEEE----------CCCCCEEEESC---SEEETTCEEEEEEECC--TTSE-EEE--SSCSSS---------CCSSE
T ss_pred             EEEEEEEe----------CCCCceeecCC---ceecCCCcEEEEEEcc--CCCE-EEE--CCEEcc---------CCCCc
Confidence            66788887          4  33333222   2277899999999998  8887 999  665431         12344


Q ss_pred             EEEEEcCCCcccCeEEEEEEEcCC-ccce---ecEEEEEEcC
Q psy3823         282 SVARYTPTSELEYGTLLCWARNEQ-GSQR---TPCTFHVVKA  319 (365)
Q Consensus       282 s~l~i~~v~~~d~G~Y~C~a~n~~-g~~~---~~~~l~v~~~  319 (365)
                      +.|.|..+..+|+|.|+|.|.|.. |...   ..+.|.|..+
T Consensus       142 ~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~  183 (265)
T 2oz4_A          142 AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG  183 (265)
T ss_dssp             ECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEE
T ss_pred             EEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeC
Confidence            568899999999999999998544 7654   6667776533

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.78  E-value=1.1e-18  Score=146.16  Aligned_cols=175  Identities=15%  Similarity=0.314  Sum_probs=114.5

Q ss_pred             EEEEecCCcEEEEEEeCCCCC-----cceEEEEeCCCcCCC-------------CCCceeEec---CCeEEEEEEccCCC
Q psy3823          21 IYGALRNEQVLVSCTVDANPQ-----AQYFTWAFNNSGTAP-------------RPLTSYSIQ---DGSTSVARYTPTSE   79 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~-----~~~v~W~~~~~~~l~-------------~~~~~~~~~---~~~~~~l~i~~~~~   79 (365)
                      .+.+.+|++++|.|...+.|.     + .+.|++++.. ..             .........   .....+|.|.+++.
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~-~v~W~~~~~~-~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   81 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQL-NLIWQLTDTK-QLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRV   81 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTE-EEEEEETTTC-CEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCce-EEEEEECCCc-cEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccc
Confidence            355789999999999766653     5 9999998755 31             001111111   01134799999999


Q ss_pred             CCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE-EecCCCCeeEEEe-
Q psy3823          80 LEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI-QANPPYKKLIWTH-  157 (365)
Q Consensus        80 ~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~i~W~~-  157 (365)
                      +|+|.|+|.+.+.. .....+.|.|..      +..+|.+...+     ...+.+|+.+.|.|.+ .+.|.+. +.|++ 
T Consensus        82 ~D~G~Y~C~~~~~~-~~~~~~~l~V~~------~~~~p~i~~~~-----~~~v~~G~~~~l~C~~~~g~P~~~-v~W~~~  148 (222)
T 4i0k_A           82 TDEGSYTCFVSIQD-FDSAAVSLQVAA------PYSKPSMTLEP-----NKDLRPGNMVTITCSSYQGYPEAE-VFWKDG  148 (222)
T ss_dssp             GGCSCEEEEEEECC-CCCCCCCCCCCB------CCCCCEEECCC----------CCSEEEEEEEEEEEBSCCE-EEEECT
T ss_pred             ccCEEEEEEEEeCC-CceEEEEEEEEc------CCCCCcEEeCC-----CceecCCceEEEEEecccccCCCe-EEEEcC
Confidence            99999999999853 344566666621      12235544322     2356789999999999 6778776 99998 


Q ss_pred             CCeEEeeCCCCceEE-ee---ceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         158 NGITISNNASAGRII-TN---QTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       158 ~~~~l~~~~~~~~~~-~~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      ++..+.......... .+   ..|.|.++...|+|.|+|.+.|..|... ..+.|.|.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~  205 (222)
T 4i0k_A          149 QGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQD-AHGSVTIT  205 (222)
T ss_dssp             TSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEE-EEEEEECC
T ss_pred             CCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCc-eEEEEEEe
Confidence            454443211100111 11   2378999999999999999999998665 66777777

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.78  E-value=3.1e-17  Score=161.52  Aligned_cols=242  Identities=11%  Similarity=0.060  Sum_probs=154.7

Q ss_pred             cCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCC-CCeEEEEEEEeCCCCCc-ccEEEE
Q psy3823          26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSEL-EYGTLLCWARNEQGNQR-TPCTFH  103 (365)
Q Consensus        26 ~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~~~~~~~~-~~~~l~  103 (365)
                      .++.+.|.|.+.+.|.+ .+.|.+++.. +...         ....+.|..+... ..+.|+|.+.+..|... ..+.+.
T Consensus        90 ~~g~l~v~c~~~g~P~p-~i~W~k~g~~-~~~~---------~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~  158 (731)
T 2v5y_A           90 PPGLLNVYVKVNNGPLG-NPIWNISGDP-TRTW---------NRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVL  158 (731)
T ss_dssp             CSEEEEEEEEETTCCCC-SEEEEECCCC-CSSC---------EEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEE
T ss_pred             CcceEEEEEecCCCCcc-ceeEEEeCCc-CCce---------eEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEee
Confidence            35689999999999999 9999999987 4321         1123445443222 34778887666665433 223322


Q ss_pred             EEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeE-EE--eCCeEEeeCCCCc--eEEeeceEE
Q psy3823         104 VVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLI-WT--HNGITISNNASAG--RIITNQTLV  178 (365)
Q Consensus       104 V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~-W~--~~~~~l~~~~~~~--~~~~~~~l~  178 (365)
                      +   ..|   ..+|.+. .+    .+..+.+|+++.|.|.+.|.|.+. +. |+  ++|..+.......  .....++|.
T Consensus       159 ~---~~~---~~~p~~~-~~----~~~~v~~G~~v~l~C~~~g~P~p~-i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~  226 (731)
T 2v5y_A          159 G---HPC---TRTPHFL-RI----QNVEVNAGQFATFQCSAIGRTVAG-DRLWLQGIDVRDAPLKEIKVTSSRRFIASFN  226 (731)
T ss_dssp             S---SCC---SSSCEEC-CC----CCEEEETTSCEEEEEEEESCCCTT-CEEEEEESSSCCEEEEEEEECCSSEEEEEEE
T ss_pred             e---ccc---ccccccc-cc----cceEEeCCCcEEEEEEeCCCCCCc-eeEEEecCCCccccccceEEeccccceEEEE
Confidence            2   011   2345543 22    345788999999999999999887 87 88  6787765321100  001246899


Q ss_pred             EeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee---CCCc
Q psy3823         179 LQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN---PQAQ  255 (365)
Q Consensus       179 i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~  255 (365)
                      |.++...|+|.|+|.|.|..|...+..+.|.|.          .+|.....+.. . ......+.|.|.....   .+..
T Consensus       227 I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~----------~~P~~~~~p~~-~-~~~~~~v~l~w~~~~~~g~~~i~  294 (731)
T 2v5y_A          227 VVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK----------EPPVPIAPPQL-A-SVGATYLWIQLNANSINGDGPIV  294 (731)
T ss_dssp             ECSCCTTTCEEEEEEEEETTEEEECCCEEEEEE----------CCCCBSSCCEE-E-EECSSCEEEECCCSSBSSCSCCC
T ss_pred             EcccccccCeEEEEEEECCCCCcceeeEEEEEe----------cCCCCCCCcce-e-ccCCceEEEEeCCcccCCCCccE
Confidence            999999999999999999998744466788888          66654332222 1 2345678888876422   1111


Q ss_pred             --eeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE--cCCccce
Q psy3823         256 --YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR--NEQGSQR  309 (365)
Q Consensus       256 --~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~--n~~g~~~  309 (365)
                        .+.|...+...      ..... .....+.|.++...+...|+|.|.  |..|...
T Consensus       295 ~Y~v~~~~~~~~~------~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~  345 (731)
T 2v5y_A          295 AREVEYCTASGSW------NDRQP-VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGS  345 (731)
T ss_dssp             EEEEEEEESSSSC------EEEEE-CCSSEEEECSCCTTCEEEEEEEEECSSTTCSCC
T ss_pred             EEEEEEEECCCCc------eEEec-cCcceEEEeCCCCCCEEEEEEEEEecCCCcccc
Confidence              46666543211      11111 122458889998888889999999  9988654

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.78  E-value=1.8e-18  Score=143.08  Aligned_cols=164  Identities=13%  Similarity=0.252  Sum_probs=104.1

Q ss_pred             eecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      +.+|++++|.|.+   |.+. +.|+++|..+...     ...+.+|.|.+++.+|+|.|+|.+.+..    +..+.|.+.
T Consensus        15 ~~~G~~v~L~C~~---p~~~-i~W~k~g~~l~~~-----~~~~~~L~i~~v~~~DsG~Y~C~~~~~~----s~~~~v~v~   81 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKN-ITWFKDGKMIGFL-----TEDKKKWNLGSNAKDPRGMYQCKGSQNK----SKPLQVYYR   81 (204)
T ss_dssp             CCSSSEEEEEECS---CSSE-EEEEETTEEEEEE-----ESSCCCEEEEEGGGCCEEEEEEESSSSC----CCCEEEEEE
T ss_pred             ecCCCeEEEEEcC---CCCE-EEEEECCEECCCC-----CCCCCeEEeCCCCcCCCEEEEEEecCCC----CeeEEEEEE
Confidence            4689999999987   5555 9999999988642     1135689999999999999999964322    233445443


Q ss_pred             eeee----ccc----------------c-cCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC
Q psy3823         212 KMVN----LIF----------------N-SIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP  270 (365)
Q Consensus       212 ~~~~----~~~----------------~-~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~  270 (365)
                      ....    ..+                . ....+.+...+.. . ..+|+.++|.|.  +.|.+. +.|++++.......
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-v-~~~G~~v~L~C~--g~p~p~-i~W~k~~~~l~~~~  156 (204)
T 1sy6_A           82 MGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK-V-SISGTTVILTCP--QYPGSE-ILWQHNDKNIGGDE  156 (204)
T ss_dssp             C------------------------------------CCCCE-E-EEETTEEEEECS--CCCSSC-EEEEETTEEESCCT
T ss_pred             EeccccccccccccccccccccccccccccccccceecCCce-e-eecCCcEEEEcC--CCCCCc-eEEEECCEECCCcc
Confidence            0000    000                0 0001112111111 1 238999999999  788888 99999986443221


Q ss_pred             CceeEeeCCCEEEEEEcCC-CcccCeEEEEEEEcCCccc-eecEEEE
Q psy3823         271 LTSYSIQDGSTSVARYTPT-SELEYGTLLCWARNEQGSQ-RTPCTFH  315 (365)
Q Consensus       271 ~~~~~~~~~~~s~l~i~~v-~~~d~G~Y~C~a~n~~g~~-~~~~~l~  315 (365)
                      ....+...  ...|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.
T Consensus       157 ~~~~~~~~--~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~  201 (204)
T 1sy6_A          157 DDKNIGSD--EDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR  201 (204)
T ss_dssp             TCTTEEEE--TTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred             CCceEecC--CCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence            11111111  225999999 9999999999999999963 3444443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.77  E-value=1.3e-18  Score=143.42  Aligned_cols=168  Identities=11%  Similarity=0.208  Sum_probs=113.4

Q ss_pred             cceecCCcEEEEEEEEe----cCCCCeeEEEeCCeEEeeCCC----------CceEE---eeceEEEeeecCCCCeEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQA----NPPYKKLIWTHNGITISNNAS----------AGRII---TNQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~----~p~~~~i~W~~~~~~l~~~~~----------~~~~~---~~~~l~i~~~~~~d~G~Y~C  192 (365)
                      ..+.+|+++.|.|.+.+    .+.+. +.|++++..+.....          .+...   .+.+|.|.+++..|+|.|+|
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~-~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTR-IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCE-EEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccE-EEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            35789999999999853    34444 999999987731110          11111   24689999999999999999


Q ss_pred             EEEcCCCCCC----cccEEEEEeeeeecccccCCC---CceecCccceeeeecCceEEEEEEEe-eeCCCceeEEEeCCC
Q psy3823         193 SAINSQGEGG----STPFDLNINKMVNLIFNSIDE---PVCKQSQQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNS  264 (365)
Q Consensus       193 ~~~~~~~~~~----s~~~~l~v~~~~~~~~~~~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~~W~~~~~  264 (365)
                      .+.+..|...    ...+.|.|.          ..   |.+..     .....|+.+.|.|.+. +.|.|. +.|+++|.
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~----------~~~~~p~~~~-----~~~~~g~~~~l~C~~~~g~P~p~-i~W~k~g~  146 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVK----------ADFPTPSISD-----FEIPTSNIRRIICSTSGGFPEPH-LSWLENGE  146 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEE----------CCCCCCEEEE-----EECSSTTEEEEEEEEEEESSCEE-EEEEESSC
T ss_pred             EEEcCCCCccccccccEEEEEEc----------CCCCCCceEe-----ccCCCCCeEEEEEecCCccCCCE-EEEEECCE
Confidence            9999877554    245667776          33   32221     1124588999999995 899998 99999876


Q ss_pred             CCCCCCCceeEeeC-CCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         265 DTAPRPLTSYSIQD-GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       265 ~~~~~~~~~~~~~~-~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      .............+ +......+..+..+|.|.|+|.|.|..|..+..+.+
T Consensus       147 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          147 ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             EECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             ECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            44322111112222 333333344556689999999999999988765544

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.77  E-value=9.4e-18  Score=143.87  Aligned_cols=193  Identities=14%  Similarity=0.104  Sum_probs=117.8

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEeCCC--CCcceEEEEeCCCcC-CC-------C----------CCceeEe--cCCeE
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGT-AP-------R----------PLTSYSI--QDGST   69 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~-l~-------~----------~~~~~~~--~~~~~   69 (365)
                      |......+..+.+.+|++++|.|...+.  |.+ .+.|+|..... +.       .          ..+....  .....
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHF-TVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCc-eEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            3334445667788999999999996553  566 99999853210 00       0          0111111  23445


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeC------------CCCCcccEEEEEEeccccCCC------CCCCeEEEEcCCccCccc
Q psy3823          70 SVARYTPTSELEYGTLLCWARNE------------QGNQRTPCTFHVVKAGECEHP------VDKPSVQIKLGRNLNASV  131 (365)
Q Consensus        70 ~~l~i~~~~~~d~G~Y~C~a~~~------------~~~~~~~~~l~V~~~~~~~~~------~~~p~~~~~~~~~~~~~~  131 (365)
                      .+|.|.+++.+|+|.|.|.+.+.            .........|.|........+      ..+|.+...+    ....
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  160 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAP----GTLS  160 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEEC----SEEE
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecC----CeEE
Confidence            67999999999999999999886            111225567787321000000      0033344433    3356


Q ss_pred             eecCCcEEEEEEEEecCC-CCeeEEEeC--CeEEe---eC-------CCCceEE--e--eceEEEeeecCCCCeEEEEEE
Q psy3823         132 LNEGVDIYFDCHIQANPP-YKKLIWTHN--GITIS---NN-------ASAGRII--T--NQTLVLQSVTRHSGGLYACSA  194 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~~p~-~~~i~W~~~--~~~l~---~~-------~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~~  194 (365)
                      +.+|++++|.|.+.+.+. +. +.|++.  +..+.   ..       ...+...  .  ..+|.|.+++.+|+|.|.|.+
T Consensus       161 v~~G~~v~L~C~~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~  239 (256)
T 3juy_B          161 LSPGERATFSCRSSHSIRSRR-VAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQV  239 (256)
T ss_dssp             ECTTSCEEEEEEESSCCTTCC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE
T ss_pred             EeCCCCEEEEEEECCCcCCee-EEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEE
Confidence            889999999999998775 55 999982  22211   00       0111111  1  346999999999999999999


Q ss_pred             EcCCCCCCcccEEEEE
Q psy3823         195 INSQGEGGSTPFDLNI  210 (365)
Q Consensus       195 ~~~~~~~~s~~~~l~v  210 (365)
                      .+...........|.|
T Consensus       240 ~~~~~~~~g~gt~l~V  255 (256)
T 3juy_B          240 YGASSYTFGQGTKLER  255 (256)
T ss_dssp             CCSSCCEECCCEEEEE
T ss_pred             eeCCCceEcCCEEEEE
Confidence            9865443334444544

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.77  E-value=1.9e-18  Score=143.80  Aligned_cols=174  Identities=13%  Similarity=0.117  Sum_probs=114.7

Q ss_pred             ceecCCcEEEEEEEEecCCCCeeEEEe--CCeEEe---eC-------CCCceE----EeeceEEEeeecCCCCeEEEEEE
Q psy3823         131 VLNEGVDIYFDCHIQANPPYKKLIWTH--NGITIS---NN-------ASAGRI----ITNQTLVLQSVTRHSGGLYACSA  194 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~--~~~~l~---~~-------~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~  194 (365)
                      .+.+|++++|.|.+.+.+.+. +.|++  ++....   ..       ...+..    ..+.+|.|.+++..|+|.|+|.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   89 (213)
T 3mj8_L           11 SVALGQKATITCSGDKLSDVY-VHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQS   89 (213)
T ss_dssp             EEETTSCEEEEEECSSTTTSC-EEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEeCCCCEEEEEEcCCCCCce-EEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEEe
Confidence            577999999999999877777 99998  222111   00       011121    12457999999999999999999


Q ss_pred             EcCCC--CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeCCCCCCCCCC
Q psy3823         195 INSQG--EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSDTAPRPL  271 (365)
Q Consensus       195 ~~~~~--~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~~~  271 (365)
                      .+..+  ......+.|.|...      ...+|.+........ +..|+.++|.|.+.+.+++ ..+.|+++|........
T Consensus        90 ~~~~~~~~~~~~~~~l~V~~~------~~~~P~i~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~  162 (213)
T 3mj8_L           90 WDGTNSAWVFGSGTKVTVLGQ------PNAAPSVTLFPPSSE-ELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVK  162 (213)
T ss_dssp             EETTTTEEEEBCCEEEEEECS------CCBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             ccCCcceeEEcCceEEEEeCC------CCCCCeEEccCCCcc-cccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcc
Confidence            99887  23335567777610      002344433222222 4479999999999986433 24999998875432111


Q ss_pred             cee-EeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         272 TSY-SIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       272 ~~~-~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      ... ...++.   .+.|.|.++..+|+|.|+|.|.|..+....++
T Consensus       163 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          163 TTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             ECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             cCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            100 112222   24589999999999999999999987766544

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.77  E-value=7.2e-18  Score=144.29  Aligned_cols=186  Identities=14%  Similarity=0.230  Sum_probs=120.9

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCC---CCceEEeeceEEEeeecCCCCeEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNA---SAGRIITNQTLVLQSVTRHSGGLY  190 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y  190 (365)
                      ..+|.+...+.     ..+.+|++|+|.|.+.+ +.+ .+.|+|+|..+....   .......+..|.|.+++.+|+|.|
T Consensus         5 ~~kP~i~~~P~-----~~V~~G~~VtL~C~~~~-~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y   77 (257)
T 1b6u_A            5 HRKPSLLAHPG-----PLVKSEETVILQCWSDV-RFQ-HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTY   77 (257)
T ss_dssp             CCCCEECCBSC-----SEEESSCCEEEEEEESS-CCS-EEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEE
T ss_pred             CCCCEEEEcCC-----CEecCCCCEEEEEecCC-CCc-EEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEE
Confidence            45676655432     36789999999999864 334 499999886543110   000112356899999999999999


Q ss_pred             EEEEEcCCC----CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCC
Q psy3823         191 ACSAINSQG----EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDT  266 (365)
Q Consensus       191 ~C~~~~~~~----~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~  266 (365)
                      +|.+.+...    ...+..+.|.|..       ...+|.+...+..  .+.+|+.++|.|.+.+.+ +. +.|+++|...
T Consensus        78 ~C~a~~~~~~~~~s~~S~~~~L~V~~-------~~~~P~l~~~p~~--~V~~G~~vtL~C~~~~~~-~~-~~w~k~g~~~  146 (257)
T 1b6u_A           78 RCYGSVTHSPYQLSAPSDPLDIVITG-------LYEKPSLSAQPGP--TVLAGESVTLSCSSRSSY-DM-YHLSREGEAH  146 (257)
T ss_dssp             EEEEECSSCTTSCCCCCCCEEEEEEC-------SSCCCEEECSSCT--TCBTTCEEEEEEECSSCC-SE-EEEEETTSSC
T ss_pred             EEeEeccCCCccccccCCCEEEeccc-------CCCCcceEccCCC--ccCCCCEEEEEEeCCCCC-cE-EEEEECCccc
Confidence            999986432    2345677888871       1134555543322  278999999999987653 55 9999998744


Q ss_pred             CCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc-----cceecEEEEEEcC
Q psy3823         267 APRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG-----SQRTPCTFHVVKA  319 (365)
Q Consensus       267 ~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~  319 (365)
                      .................|.|.+++  |+|.|+|.|.|..+     ..+..+.|.|...
T Consensus       147 ~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~  202 (257)
T 1b6u_A          147 ERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGN  202 (257)
T ss_dssp             EECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCC
T ss_pred             CcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEecc
Confidence            221111111111234569999998  99999999997632     2345566666543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.77  E-value=2.2e-17  Score=143.22  Aligned_cols=189  Identities=11%  Similarity=0.157  Sum_probs=117.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC----CC---------CCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT----AP---------RPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~----l~---------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|.+.+.|.+ .+.|+|++...    +.         ...+.....++....|.|.+++.+|+|.|
T Consensus        19 p~~~~v~~G~~v~L~C~~~~~p~~-~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   97 (276)
T 3auv_A           19 PSSLSASVGDRVTITCRASQDVST-AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATY   97 (276)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCeEEEcCCCCEEEEeEcCCCCCC-cEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEE
Confidence            456778999999999998888888 99999975320    10         01111222233445899999999999999


Q ss_pred             EEEEEeCCCCCc-ccEEEEEEeccccC----CCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC-CCeeEEEeCC
Q psy3823          86 LCWARNEQGNQR-TPCTFHVVKAGECE----HPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP-YKKLIWTHNG  159 (365)
Q Consensus        86 ~C~a~~~~~~~~-~~~~l~V~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~~i~W~~~~  159 (365)
                      +|.+.+..+... ....|.|.......    ....+|.+.+...   ....+.+|++++|.|.+.+.++ ...+.|++++
T Consensus        98 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p---~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~  174 (276)
T 3auv_A           98 YCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVES---GGGLVQPGGSLRLSCAASGFTISDYWIHWVRQA  174 (276)
T ss_dssp             EEEECSSSSCCCCCCEEEEC-----------------CCEEEEE---CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             EEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECC---CceEecCCCeEEEEEEecCccCCCCEEEEEEcC
Confidence            999998755422 44677773210000    0001222222221   2346889999999999998763 3449999852


Q ss_pred             --eEE---e------------eCCCCceEEe------eceEEEeeecCCCCeEEEEEEEcCC----CCCCcccEEEEEe
Q psy3823         160 --ITI---S------------NNASAGRIIT------NQTLVLQSVTRHSGGLYACSAINSQ----GEGGSTPFDLNIN  211 (365)
Q Consensus       160 --~~l---~------------~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~----~~~~s~~~~l~v~  211 (365)
                        ..+   .            .....+....      ..+|.|.+++.+|+|.|+|.+.|..    .........|.|.
T Consensus       175 ~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~  253 (276)
T 3auv_A          175 PGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVS  253 (276)
T ss_dssp             TTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC
T ss_pred             CCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEc
Confidence              221   0            0011122222      2379999999999999999999973    2223234566665

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.77  E-value=3.5e-18  Score=147.39  Aligned_cols=172  Identities=17%  Similarity=0.260  Sum_probs=115.5

Q ss_pred             CceEEEEecCCcEEEEEEeC---CCCCcceEEEEeCCCcCCCCCCc------------------eeEe--cCCeEEEEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVD---ANPQAQYFTWAFNNSGTAPRPLT------------------SYSI--QDGSTSVARY   74 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~---~~p~~~~v~W~~~~~~~l~~~~~------------------~~~~--~~~~~~~l~i   74 (365)
                      .+..+.+.+|+.++|.|...   +.|.+ .+.|++++.. ......                  ....  ......+|.|
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   88 (268)
T 3mj6_A           11 SSPQLRVHVGESVLMGCVVQRTEEKHVD-RVDWLFSKDK-DDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLL   88 (268)
T ss_dssp             -CCEEEEETTCCEEECCBCCCSSCCCEE-EEEEEEESSS-TTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEE
T ss_pred             CCCceEEecCCcEEEEEEeecCCCCceE-EEEEEEeCCC-CCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEE
Confidence            34557789999999999965   56667 9999997654 322211                  0100  0111247999


Q ss_pred             ccCCCCCCeEEEEEEEeCCCCCc--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE---EecCC
Q psy3823          75 TPTSELEYGTLLCWARNEQGNQR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI---QANPP  149 (365)
Q Consensus        75 ~~~~~~d~G~Y~C~a~~~~~~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~---~~~p~  149 (365)
                      .+++.+|+|.|+|.+.+..+...  ..+.|.|.        ...|          ....+.+|+.++|.|.+   .+.|.
T Consensus        89 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--------~~~p----------~~~~v~~G~~v~L~C~~~~~~~~p~  150 (268)
T 3mj6_A           89 QDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--------PEEP----------RDLRVRVGDTTQMRCSIQSTEEKRV  150 (268)
T ss_dssp             CSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--------CCCC----------SEEEEETTCCEEECCBCEESSSSCC
T ss_pred             CCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--------ccCC----------CccccccCCcEEEEEEecCCCCCCc
Confidence            99999999999999998765543  55666662        1111          22357899999999999   45566


Q ss_pred             CCeeEEEeC-CeE------Eee-----------CCC--CceE------EeeceEEEeeecCCCCeEEEEEEEcCCCCCCc
Q psy3823         150 YKKLIWTHN-GIT------ISN-----------NAS--AGRI------ITNQTLVLQSVTRHSGGLYACSAINSQGEGGS  203 (365)
Q Consensus       150 ~~~i~W~~~-~~~------l~~-----------~~~--~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s  203 (365)
                      +. +.|+++ +..      +..           ...  .+..      ..+.+|.|.+++.+|+|.|+|.|.|..+... 
T Consensus       151 ~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~-  228 (268)
T 3mj6_A          151 TK-VNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESR-  228 (268)
T ss_dssp             CE-EEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEE-
T ss_pred             cc-eEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEE-
Confidence            66 999983 321      100           000  0111      1256899999999999999999999777544 


Q ss_pred             ccEEEEEe
Q psy3823         204 TPFDLNIN  211 (365)
Q Consensus       204 ~~~~l~v~  211 (365)
                      ..+.|.|.
T Consensus       229 ~~~~l~V~  236 (268)
T 3mj6_A          229 KTIVLHVV  236 (268)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            66778875

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.77  E-value=3.2e-18  Score=143.04  Aligned_cols=172  Identities=15%  Similarity=0.209  Sum_probs=113.2

Q ss_pred             ceecCCcEEEEEEEEecCCCC--eeEEEeCCeEEeeC--C------------CCc-----------eEEeeceEEEeeec
Q psy3823         131 VLNEGVDIYFDCHIQANPPYK--KLIWTHNGITISNN--A------------SAG-----------RIITNQTLVLQSVT  183 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~--~i~W~~~~~~l~~~--~------------~~~-----------~~~~~~~l~i~~~~  183 (365)
                      ....|++|+|.|.+.+.+.+.  .+.|++++..+...  .            ..+           ....+.+|.|.+++
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~   91 (225)
T 4fmk_A           12 RGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLR   91 (225)
T ss_dssp             EEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCC
T ss_pred             EEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCC
Confidence            457899999999998766553  37899976443210  0            000           01124579999999


Q ss_pred             CCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEe-eeCCCceeEEEeC
Q psy3823         184 RHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFN  262 (365)
Q Consensus       184 ~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~~W~~~  262 (365)
                      .+|+|.|.|.+.+..+........+.+.          .+|.......... ...++...+.|.+. +.|++. +.|+++
T Consensus        92 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~c~~~~~~P~~~-~~w~~~  159 (225)
T 4fmk_A           92 VEDEGNYTCEFATFPNGTRRGVTWLRVI----------AQPENHAEAQEVT-IGPQSVAVARCVSTGGRPPAR-ITWISS  159 (225)
T ss_dssp             GGGCEEEEEEEEEETTEEEEEEEEEEEE----------BCCEEEEEECCBC-CSSSCEEEEEEEEEEEBSCCE-EEEECS
T ss_pred             HHHCcceEEEEEeCCCcceeeeeeeeee----------cCCceeeccccee-ecceeeeeeeeeecCCCCCCE-EEEEEC
Confidence            9999999999998877555444555555          4554443332222 55677777777775 467776 999987


Q ss_pred             CCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         263 NSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +..... ........++.   .+.|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus       160 ~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~  214 (225)
T 4fmk_A          160 LGGEAK-DTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVT  214 (225)
T ss_dssp             SCCEEE-EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred             CccccC-CcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEE
Confidence            653221 11111122333   35799999999999999999999998765444443

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.77  E-value=3.5e-17  Score=140.29  Aligned_cols=177  Identities=12%  Similarity=0.247  Sum_probs=118.3

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--CeEEe---e-C-----------CCCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GITIS---N-N-----------ASAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~l~---~-~-----------~~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++++|.|.+.+.+  .+. +.|+++  +..+.   . .           ...+....      ..+|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~g~~~~~~~-v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (256)
T 1nqb_A           10 ELVKPGASVKLSCKASGYTFTSYW-MHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS   88 (256)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSC-EEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeecCCCcEEEEEEeccccCCCce-EEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCCh
Confidence            3678999999999998765  445 999983  32221   0 0           01122221      34799999999


Q ss_pred             CCCeEEEEEEEcCCCC----CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-----c
Q psy3823         185 HSGGLYACSAINSQGE----GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-----Q  255 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~----~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~  255 (365)
                      +|+|.|.|.+.+..|.    .....+.|.|.          ..|.+...+.. ..+.+|+.++|.|.+.+.|++     .
T Consensus        89 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~----------~~~~v~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~~~~  157 (256)
T 1nqb_A           89 EDSAVYYCARYDYYGSSYFDYWGQGTTVTVS----------SDIELTQTPLS-LPVSLGDQASISCRSSQSIVHSNGNTY  157 (256)
T ss_dssp             GGCEEEEEEECCTTSSSSCSEECCCEEEEEC----------CCCCEEEECSE-EEECTTCCEEEEEEESSCCBCTTSCBC
T ss_pred             hhCEEEEEEEeeccCccceeEEcCceeeeec----------ccccEEecCcE-EEEecCCcEEEEeEecCcccccccceE
Confidence            9999999999988652    12234677777          66655443333 338899999999999988765     6


Q ss_pred             eeEEEe--CCCCCC-----------CCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc-ceecEEEEEEcC
Q psy3823         256 YFTWAF--NNSDTA-----------PRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS-QRTPCTFHVVKA  319 (365)
Q Consensus       256 ~~~W~~--~~~~~~-----------~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~  319 (365)
                       +.|++  +|....           ....++..........|.|.+++.+|+|.|+|.|.|..+. ......|.|..+
T Consensus       158 -v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  234 (256)
T 1nqb_A          158 -LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA  234 (256)
T ss_dssp             -EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred             -EEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence             99999  443210           0012222233445667999999999999999999985432 223445666544

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.77  E-value=2.3e-18  Score=142.01  Aligned_cols=164  Identities=12%  Similarity=0.049  Sum_probs=109.0

Q ss_pred             EEEEecCCcEEEEEEeCC----CCCcceEEEEeCCCcCCCC---C---------CceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          21 IYGALRNEQVLVSCTVDA----NPQAQYFTWAFNNSGTAPR---P---------LTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~----~p~~~~v~W~~~~~~~l~~---~---------~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      .+.+.+|++++|.|.+..    .|.+ .+.|++++.. +..   .         ....... .....|.|.+++.+|+|.
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~-~~~W~~~~~~-i~~~~~~~~~~~~~~~~r~~~~~-~~~~~L~I~~v~~~D~G~   79 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQT-RIYWQKEKKM-VLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGT   79 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHC-EEEEEETTEE-EEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEE
T ss_pred             eEEEEeCCCEEEecccCCCccccccc-EEEEEeCCcE-EEEEeCCceeecCcccceeEEcc-CCCcEEEEecccchhCeE
Confidence            466889999999999643    3556 9999999876 420   0         0001111 112379999999999999


Q ss_pred             EEEEEEeCCCCCc-----ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEE-ecCCCCeeEEEeC
Q psy3823          85 LLCWARNEQGNQR-----TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQ-ANPPYKKLIWTHN  158 (365)
Q Consensus        85 Y~C~a~~~~~~~~-----~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~i~W~~~  158 (365)
                      |+|.+.+..+...     ..+.|.|...      ...|.+.+..        ...|+.+.|.|.+. |.|.|. +.|+++
T Consensus        80 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~------~~~p~~~~~~--------~~~g~~~~l~C~~~~g~P~p~-i~W~k~  144 (201)
T 1dr9_A           80 YECVVLKYEKDAFKREHLAEVTLSVKAD------FPTPSISDFE--------IPTSNIRRIICSTSGGFPEPH-LSWLEN  144 (201)
T ss_dssp             EEEEEEECCTTSCEEEEEEEEEEEEECC------CCCCEEEEEE--------CSSTTEEEEEEEEEEESSCEE-EEEEES
T ss_pred             EEEEEEcCCCCccccccccEEEEEEcCC------CCCCceEecc--------CCCCCeEEEEEecCCccCCCE-EEEEEC
Confidence            9999999776543     4677777321      1235544321        23588999999996 888886 999999


Q ss_pred             CeEEeeCCCCceEEee-ceE---EEeeecCCCCeEEEEEEEcCCCCCC
Q psy3823         159 GITISNNASAGRIITN-QTL---VLQSVTRHSGGLYACSAINSQGEGG  202 (365)
Q Consensus       159 ~~~l~~~~~~~~~~~~-~~l---~i~~~~~~d~G~Y~C~~~~~~~~~~  202 (365)
                      |..+............ +.+   .+..+...|.|.|+|.|.|..+...
T Consensus       145 g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s  192 (201)
T 1dr9_A          145 GEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVN  192 (201)
T ss_dssp             SCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEE
T ss_pred             CEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceee
Confidence            9988643211111111 111   2345567899999999999987543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.77  E-value=5.4e-18  Score=141.73  Aligned_cols=170  Identities=11%  Similarity=0.130  Sum_probs=110.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCC--CcCCC------C-----------CCceeEe--cCCeEEEEEEc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNN--SGTAP------R-----------PLTSYSI--QDGSTSVARYT   75 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~--~~~l~------~-----------~~~~~~~--~~~~~~~l~i~   75 (365)
                      +....+.+|++++|.|.+.+.|  .+ .+.|+|++  .. +.      .           ..+....  .......|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~k~~~g~~-~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNY-GMNWVKQAPGKA-LKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN   84 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGS-EEEEEEECTTSC-EEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccc-eEEEEEeCCCCC-cEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence            3445789999999999976665  56 99999974  22 11      0           0111111  11234589999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCC----cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCC
Q psy3823          76 PTSELEYGTLLCWARNEQGNQ----RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPY  150 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~~~----~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~  150 (365)
                      +++.+|+|.|+|.+.+..+..    ...+.|.|...     +..+|.+......    ..+.+|+.++|.|.+.+ +|.+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-----~~~~P~i~~~~~~----~~~~~g~~v~L~C~~~g~~P~p  155 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSA-----KTTPPSVYPLAPG----SAAQTNSMVTLGCLVKGYFPEP  155 (219)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCC-----CCBCCEEEEECCC----SSSCCSSEEEEEEEEEEEBSSC
T ss_pred             CCCcccCEEEEEEEeccCcccceeecCceEEEEecC-----CCCCCeEEEecCc----cccccCCeEEEEEEcccccCCC
Confidence            999999999999999876321    14567777310     1224665544322    24568999999999998 7877


Q ss_pred             CeeEEEeCCeEEeeCCCC-----ceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         151 KKLIWTHNGITISNNASA-----GRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       151 ~~i~W~~~~~~l~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      ..+.|+++|..+......     +.......|.|.. ...|.|.|+|.|.|..+.
T Consensus       156 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~-~~~d~g~Y~C~a~n~~~~  209 (219)
T 1c1e_H          156 VTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPS-SPRPSETVTCNVAHPASS  209 (219)
T ss_dssp             CEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEES-SSTTTSCCEEEEEEGGGT
T ss_pred             eEEEEEeCCcccceEecCCcccCCeEEEEEEEEEec-ccCCCCEEEEEEEeCCCC
Confidence            459999998764211111     1112234688844 444569999999998764

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.77  E-value=1.1e-17  Score=143.46  Aligned_cols=185  Identities=13%  Similarity=0.101  Sum_probs=116.8

Q ss_pred             EEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-CC-----------------CCCceeEe--cCCeEEEEEEccCC
Q psy3823          21 IYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-AP-----------------RPLTSYSI--QDGSTSVARYTPTS   78 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l~-----------------~~~~~~~~--~~~~~~~l~i~~~~   78 (365)
                      ...+.+|++++|.|.+.+.+  .+ .+.|+|..... +.                 ...+....  .......|.|.+++
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           11 LELVKPGASVKISCKTSGYTFTEY-TMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceEEcCCCCEEEEEEEeccccccc-EEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            35589999999999976655  56 99999853210 10                 00111111  22345579999999


Q ss_pred             CCCCeEEEEEEEeCCC----CCcccEEEEEEecccc-------CCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec
Q psy3823          79 ELEYGTLLCWARNEQG----NQRTPCTFHVVKAGEC-------EHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN  147 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~~----~~~~~~~l~V~~~~~~-------~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  147 (365)
                      .+|+|.|.|.+.+...    .......|.|......       .....+|.+...+    ....+.+|++++|.|.+.+.
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~v~~G~~v~L~C~~~~~  165 (256)
T 3umt_A           90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSP----SSLSASLGERVSITCRASQD  165 (256)
T ss_dssp             GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEEC----SEEEECTTCCEEEEEEESSC
T ss_pred             cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCC----CeEEEECCCCEEEEEEEecC
Confidence            9999999999988622    1225577887311000       0000144544443    23468899999999999988


Q ss_pred             CCCCeeEEEeC--CeEEe---eC-------CCCceEEe----eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         148 PPYKKLIWTHN--GITIS---NN-------ASAGRIIT----NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       148 p~~~~i~W~~~--~~~l~---~~-------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      +.+. +.|+++  +..+.   ..       ...+....    ..+|.|.+++.+|+|.|+|.+.+...........|.|.
T Consensus       166 ~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~  244 (256)
T 3umt_A          166 IGSN-LNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK  244 (256)
T ss_dssp             CTTC-EEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CCcE-EEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence            7775 999983  22221   00       01111111    34699999999999999999998655444455677776

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.77  E-value=1.1e-17  Score=142.45  Aligned_cols=175  Identities=12%  Similarity=0.086  Sum_probs=116.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeC----------------CCcCCCCC---Ccee-EecCCeEEEEEEccCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFN----------------NSGTAPRP---LTSY-SIQDGSTSVARYTPTS   78 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~----------------~~~~l~~~---~~~~-~~~~~~~~~l~i~~~~   78 (365)
                      +..+.+.+|+.++|.|...+.|.+ .+.|+|.                +.. ....   .+.. ........+|.|.+++
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~L~I~~v~   85 (246)
T 4dzb_B            8 PSWVISKSGTSVKIECRSLDFQAT-TMFWYRQFPKQSLMLMATSNEGSKAT-YEQGVEKDKFLINHASLTLSTLTVTSAH   85 (246)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCCC-SEEEEEECTTSCCEEEEEECTTSCCE-ECTTCCGGGEEEEEEETTEEEEEECSCC
T ss_pred             CcEEEEeCCCcEEEEeEecCCCce-EEEEEEECCCCCcEEEEEEccCCCce-ecCcccCCcEEEEecCCCEEEEEECCCC
Confidence            456778999999999997778888 9999993                211 1111   1111 1112335589999999


Q ss_pred             CCCCeEEEEEEEeCCCC----CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC-Cee
Q psy3823          79 ELEYGTLLCWARNEQGN----QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY-KKL  153 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~~~----~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~i  153 (365)
                      .+|+|.|+|.+.+..+.    ......|.|.....   +..+|.+.+....   ...+.+|+.++|.|.+.+.+++ ..+
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~---~~~~P~i~~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v  159 (246)
T 4dzb_B           86 PEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLK---NVFPPEVAVFEPS---EAEISHTQKATLVCLATGFYPDHVEL  159 (246)
T ss_dssp             GGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGG---GCBCCEEEEECCC---HHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             HHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCC---cccCCceEeecCC---chhccCCCcEEEEEEEccCcCCceEE
Confidence            99999999999875431    11556777732100   0246666554322   2345679999999999986654 259


Q ss_pred             EEEeCCeEEeeCCC-------------CceEEeeceEEEeeecCCC-CeEEEEEEEcCCCCC
Q psy3823         154 IWTHNGITISNNAS-------------AGRIITNQTLVLQSVTRHS-GGLYACSAINSQGEG  201 (365)
Q Consensus       154 ~W~~~~~~l~~~~~-------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~  201 (365)
                      .|+++|..+.....             .+.......|.|.....+| +|.|+|.|.|.....
T Consensus       160 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~  221 (246)
T 4dzb_B          160 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  221 (246)
T ss_dssp             EEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             EEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCC
Confidence            99999998853211             1112223458888888888 999999999976543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.76  E-value=4.7e-17  Score=137.78  Aligned_cols=162  Identities=15%  Similarity=0.253  Sum_probs=106.6

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeC--CeEEe-------------eCCCCceEE-----eeceEEEeeecCCCCeE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHN--GITIS-------------NNASAGRII-----TNQTLVLQSVTRHSGGL  189 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~--~~~l~-------------~~~~~~~~~-----~~~~l~i~~~~~~d~G~  189 (365)
                      ..+.+|++|+|.|. .+.+.+. +.|+++  +..+.             .....+...     ...+|.|.+++.+|+|.
T Consensus        10 ~~v~~G~~v~L~C~-~~~~~~~-i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~   87 (238)
T 2p1y_A           10 KVAVTGGKVTLSCN-QTNNHNN-MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSV   87 (238)
T ss_dssp             EEEETTCCEEEEEE-ECSCCSE-EEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEE
T ss_pred             eEEeCCCEEEEEee-cCCCCcc-EEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCee
Confidence            46789999999999 6666665 999984  22211             000111211     13479999999999999


Q ss_pred             EEEEEEcCCCCC----CcccEEEEEeeeeecccccCCCC------------ceecCccceeeeecCceEEEEEEEeeeCC
Q psy3823         190 YACSAINSQGEG----GSTPFDLNINKMVNLIFNSIDEP------------VCKQSQQRIYGALRNEQVLVSCTVDANPQ  253 (365)
Q Consensus       190 Y~C~~~~~~~~~----~s~~~~l~v~~~~~~~~~~~~~p------------~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  253 (365)
                      |.|.+.+..+..    ......|.|.          ..+            .+...+ ....+.+|+.++|.|.+.+.|.
T Consensus        88 Y~C~~~~~~g~~~~~~~~~~~~l~V~----------~~~~~~~p~~~~~~~~v~~~p-~~~~v~~G~~v~L~C~~~~~p~  156 (238)
T 2p1y_A           88 YFCASGDLGQTNERLFFGHGTKLSVL----------GSADDAKKDAAKKDGQVRQSP-QSLTVWEGETAILNCSYENSAF  156 (238)
T ss_dssp             EEEEEEC------CEEECCCEEEEEE----------CCCHHHHHHHHHHHTCCEEEC-SEEEEETTSCEEEEEECCCTTC
T ss_pred             EEEEEEeCCCccccceeCCCeEEEEe----------ccCCCCcCCcccceeeEEccC-ceEEEeCCCeEEEEEEEecCCC
Confidence            999999876521    1134567776          333            222222 2233889999999999999988


Q ss_pred             CceeEEEeCCCCCCCC-------------CCceeEe--eCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         254 AQYFTWAFNNSDTAPR-------------PLTSYSI--QDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       254 ~~~~~W~~~~~~~~~~-------------~~~~~~~--~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      +. +.|++++......             ..+....  .......|.|.+++.+|+|.|+|.|.|..
T Consensus       157 ~~-i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          157 DY-FPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CE-EEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             Cc-EEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            87 9999965311110             1111111  23445689999999999999999999984

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.76  E-value=3e-18  Score=142.51  Aligned_cols=174  Identities=11%  Similarity=0.130  Sum_probs=112.1

Q ss_pred             cceecCCcEEEEEEEEecCC---CCeeEEEeC--CeEEee----------CCCCceEEe----eceEEEeeecCCCCeEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPP---YKKLIWTHN--GITISN----------NASAGRIIT----NQTLVLQSVTRHSGGLY  190 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~---~~~i~W~~~--~~~l~~----------~~~~~~~~~----~~~l~i~~~~~~d~G~Y  190 (365)
                      ..+.+|++++|.|.+.+.+.   +. +.|+++  +..+..          ....+....    ..+|.|.+++..|+|.|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (212)
T 1q0x_L           10 LTTSPGETVTLTCRSSTGAVTTSNY-ANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIY   88 (212)
T ss_dssp             EEECTTCCEEEEEEESSSCCCGGGC-CEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EeecCCCCEEEEEEecccccCCCCe-EEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEE
Confidence            46789999999999988763   44 999985  333210          011122211    34899999999999999


Q ss_pred             EEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeCCCCCCCC
Q psy3823         191 ACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSDTAPR  269 (365)
Q Consensus       191 ~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~  269 (365)
                      .|.+.+..+........|.|...      ...+|.+........ +..|+.++|.|.+.+.+++ ..+.|+++|......
T Consensus        89 ~C~~~~~~~~~~~~~~~l~V~~~------~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~  161 (212)
T 1q0x_L           89 FCALWSNNKLVFGGGTKLTVLGQ------PKSSPTVTLFPPSSE-ELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAG  161 (212)
T ss_dssp             EEEEECSSCEEECCCEEEEECCS------CCBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             EEEEecCchhhcCCCeEEEEecC------CCCCCeeEEeCCCHH-HccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCC
Confidence            99999876643334456666410      003455443222211 4468999999999986544 249999988643322


Q ss_pred             CCc--eeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         270 PLT--SYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       270 ~~~--~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                      ...  .....++.   .+.|.|..+..+|+|.|+|.|.|.......+
T Consensus       162 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          162 METTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             eecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence            110  11122222   3568899999999999999999987665443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.76  E-value=2.4e-17  Score=141.06  Aligned_cols=188  Identities=13%  Similarity=0.086  Sum_probs=119.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc-CCC-----------------CCCceeEe--cCCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG-TAP-----------------RPLTSYSI--QDGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~-~l~-----------------~~~~~~~~--~~~~~~~l~i~~   76 (365)
                      +....+.+|++++|.|.+.+.+  .+ .+.|+|.... .+.                 ...+....  ......+|.|.+
T Consensus         8 p~~~~v~~G~~v~L~C~~~g~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   86 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTASGFNIKDT-YMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSS   86 (253)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGS-CEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeeecCCCcEEEEEEeeCCcccCc-eEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCC
Confidence            3456789999999999977644  56 9999993211 010                 00111111  223455799999


Q ss_pred             CCCCCCeEEEEEEEeCCCCCc-ccEEEEEEeccccC------CCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCC
Q psy3823          77 TSELEYGTLLCWARNEQGNQR-TPCTFHVVKAGECE------HPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP  149 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~------~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  149 (365)
                      ++.+|+|.|+|.+.+..+... ....|.|.......      .+..+|.+...+    ....+.+|++++|.|.+.+.+.
T Consensus        87 v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p----~~~~v~~G~~v~L~C~~~~~~~  162 (253)
T 3uzq_A           87 LTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTP----ASLAVSLGQRATISCRASENVD  162 (253)
T ss_dssp             CCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEEC----SEEEECTTSCEEEEEEESSCCE
T ss_pred             CCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcC----CeEEEeCCCCEEEEEEecCccc
Confidence            999999999999998554432 56777773210000      001234444433    2346889999999999998776


Q ss_pred             C---CeeEEEeC--CeEEe---eC-------CCCceEEe----eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEE
Q psy3823         150 Y---KKLIWTHN--GITIS---NN-------ASAGRIIT----NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       150 ~---~~i~W~~~--~~~l~---~~-------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v  210 (365)
                      +   ..+.|+++  +..+.   ..       ...+....    ..+|.|.+++.+|+|.|.|.+.|..+.....-..|.|
T Consensus       163 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v  242 (253)
T 3uzq_A          163 RYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEI  242 (253)
T ss_dssp             ETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred             cCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEE
Confidence            5   23999983  22211   00       00111111    3469999999999999999999977666556677887


Q ss_pred             e
Q psy3823         211 N  211 (365)
Q Consensus       211 ~  211 (365)
                      .
T Consensus       243 ~  243 (253)
T 3uzq_A          243 K  243 (253)
T ss_dssp             C
T ss_pred             c
Confidence            7

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.76  E-value=2.3e-17  Score=137.77  Aligned_cols=177  Identities=13%  Similarity=0.131  Sum_probs=113.9

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcc--eEEEEeCCCcCCCC----------------CCcee-------EecCCeEEEEEEc
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQ--YFTWAFNNSGTAPR----------------PLTSY-------SIQDGSTSVARYT   75 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~--~v~W~~~~~~~l~~----------------~~~~~-------~~~~~~~~~l~i~   75 (365)
                      .+.+..|++++|.|.+.+.|.+.  .++|+|++.. +..                .....       ........+|.|.
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGT-VVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSC-EEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCc-ceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            45678999999999977666551  5899998754 210                00000       0011223479999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCCc-ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeE
Q psy3823          76 PTSELEYGTLLCWARNEQGNQR-TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLI  154 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~  154 (365)
                      +++.+|+|.|+|.+.+..+... ....+.+         ..+|.....+.    .....+++.+.+.|.+.+.+++..+.
T Consensus        89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~~~~c~~~~~~P~~~~~  155 (225)
T 4fmk_A           89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRV---------IAQPENHAEAQ----EVTIGPQSVAVARCVSTGGRPPARIT  155 (225)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEE---------EBCCEEEEEEC----CBCCSSSCEEEEEEEEEEEBSCCEEE
T ss_pred             cCCHHHCcceEEEEEeCCCcceeeeeeeee---------ecCCceeeccc----ceeecceeeeeeeeeecCCCCCCEEE
Confidence            9999999999999988766554 4444454         34555444332    23455677788888776544444499


Q ss_pred             EEeCCeEEeeC-----CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC-cccEEEEEe
Q psy3823         155 WTHNGITISNN-----ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG-STPFDLNIN  211 (365)
Q Consensus       155 W~~~~~~l~~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-s~~~~l~v~  211 (365)
                      |++++..+...     ...+.....+.|.|.++..+|+|.|+|.|.|..+... +..+.|.|.
T Consensus       156 w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~  218 (225)
T 4fmk_A          156 WISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVR  218 (225)
T ss_dssp             EECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBT
T ss_pred             EEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEE
Confidence            99876554321     1111222245799999999999999999999887543 344555554

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=5.7e-17  Score=138.11  Aligned_cols=185  Identities=13%  Similarity=0.163  Sum_probs=114.8

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--CeEEe---------------eCCCCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GITIS---------------NNASAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~l~---------------~~~~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++++|.|.+.+.|  .+. +.|+++  +..+.               .....+....      ..+|.|.+++.
T Consensus        12 ~~v~~G~~v~L~C~~~g~p~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (247)
T 2ghw_B           12 GVVQPGKSLRLSCAASGFAFSSYA-MHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   90 (247)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSC-EEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEEecCCcEEEEEEeccccCCCce-EEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence            4678999999999999876  455 999983  21110               0011122221      24799999999


Q ss_pred             CCCeEEEEEEEcCCCC-CCcccEEEEEeeeeec-----ccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeE
Q psy3823         185 HSGGLYACSAINSQGE-GGSTPFDLNINKMVNL-----IFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT  258 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~-~~s~~~~l~v~~~~~~-----~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~  258 (365)
                      +|+|.|.|.+.|..+. .......|.|......     ......++.+...+ ....+.+|+.++|.|.+.+.|++. +.
T Consensus        91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~-v~  168 (247)
T 2ghw_B           91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSP-ATLSLSPGERATLSCRASQSVRSN-LA  168 (247)
T ss_dssp             GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEEC-SEEEECTTSCEEEEEEESSCCTTC-EE
T ss_pred             HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccC-CEEEecCCCcEEEEEEeCCCccce-EE
Confidence            9999999999987321 1223456777610000     00000122232222 223378999999999999998887 99


Q ss_pred             EEe--CCCCCC-----------CCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc-eecEEEEEE
Q psy3823         259 WAF--NNSDTA-----------PRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ-RTPCTFHVV  317 (365)
Q Consensus       259 W~~--~~~~~~-----------~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~  317 (365)
                      |++  ++....           ....++.....+....|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus       169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            999  443220           01122333334556779999999999999999999864322 233455554

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.76  E-value=2.3e-18  Score=145.53  Aligned_cols=173  Identities=15%  Similarity=0.228  Sum_probs=113.6

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCc-ceEEEEeCCCc-CC----------C--CCCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSG-TA----------P--RPLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~~~-~l----------~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      +....+.+|++++|.|.+.+.+.. ..+.|+|++.. .+          .  ...+...........|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            556778999999999997665433 26999997421 01          0  0111112223344589999999999999


Q ss_pred             EEEEEEeCCCC---CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC-CeeEEEeCCe
Q psy3823          85 LLCWARNEQGN---QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY-KKLIWTHNGI  160 (365)
Q Consensus        85 Y~C~a~~~~~~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~i~W~~~~~  160 (365)
                      |+|.+.+..+.   ....+.|.|..     .+..+|.+.+.+..    ....+|+.++|.|.+.+.+++ ..+.|++||.
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~-----~~~~~p~v~~~~~~----~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  176 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLG-----QPKAAPSVTLFPPS----SEELQANKATLVCLISDFFPGAVTVAWKADGA  176 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCC-----CCCCCCCCCEECCC----HHHHTTSCCCEEECCCBCSSCCCEEEEEETTE
T ss_pred             EEEEEEcCCcceeEecCCEEEEEec-----CCCCCCcccccCCC----hhHhcCCceEEEEEEEEEcCCceEEEEEECCE
Confidence            99999988762   11344555511     11235655554322    233468899999999985443 4699999999


Q ss_pred             EEeeCCC--------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         161 TISNNAS--------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       161 ~l~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .+.....        .+.......|.|.++..+|+|.|+|.|.|....
T Consensus       177 ~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  224 (234)
T 2j6e_L          177 PVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  224 (234)
T ss_dssp             ECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred             ECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence            8753210        001112346889999999999999999998764

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=1.9e-17  Score=142.02  Aligned_cols=163  Identities=14%  Similarity=0.219  Sum_probs=109.4

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--CeE---Eee-C----------CCCceEEe------eceEEEeeecCC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GIT---ISN-N----------ASAGRIIT------NQTLVLQSVTRH  185 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~---l~~-~----------~~~~~~~~------~~~l~i~~~~~~  185 (365)
                      ..+.+|++|+|.|.+.+.|  .+. +.|+++  +..   +.. .          ...+....      ..+|.|.+++.+
T Consensus        10 ~~v~~G~~v~L~C~~~g~p~~~~~-v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (257)
T 1f3r_B           10 GLVRPSETLSLTCTVSGFSLTSFS-VSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (257)
T ss_dssp             SEECTTSEEEEEEEEESSCTTTSC-CEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred             ccccCCceEEEEEEEecccCCCcc-EEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence            3678999999999999875  455 999985  221   110 0          01122221      348999999999


Q ss_pred             CCeEEEEEEEcCCCC--------CCcccEEEEEeeeeecccccCCCC---------------ceecCccceeeeecCceE
Q psy3823         186 SGGLYACSAINSQGE--------GGSTPFDLNINKMVNLIFNSIDEP---------------VCKQSQQRIYGALRNEQV  242 (365)
Q Consensus       186 d~G~Y~C~~~~~~~~--------~~s~~~~l~v~~~~~~~~~~~~~p---------------~~~~~~~~~~~~~~g~~~  242 (365)
                      |+|.|.|.+.+..|.        .......|.|.          ..|               .+... .....+.+|+.+
T Consensus        89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~----------~~~~~~~~~~~~~~~~~~~~~~~-p~~~~v~~G~~v  157 (257)
T 1f3r_B           89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVS----------SGGGGSGGGGSGGGGSDIKLTQS-PSLLSASVGDRV  157 (257)
T ss_dssp             CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEEC----------SSCCSSCCSSSCCCCCEECSCEE-TSEECCCTTCCE
T ss_pred             cCEEEEEEEcccccCccccccccccCCceEEEEE----------eCCccccccccCCCccceEEEcc-CCEEEEcCCCCE
Confidence            999999999988541        11234567776          332               11111 223347899999


Q ss_pred             EEEEEEeeeCCCceeEEEe--CCCCCCC-----------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         243 LVSCTVDANPQAQYFTWAF--NNSDTAP-----------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       243 ~l~C~~~~~p~~~~~~W~~--~~~~~~~-----------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      +|.|.+.+.|.+. +.|++  +|.....           ...++....++....|.|.+++.+|+|.|.|.|.|..
T Consensus       158 ~L~C~~~~~~~~~-v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          158 TLSCKGSQNINNY-LAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             EEEEECSSCCBTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             EEEEEECCcCCCc-EEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            9999999888887 99999  4432100           0122222223455679999999999999999999975

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.76  E-value=1.4e-17  Score=138.44  Aligned_cols=170  Identities=12%  Similarity=0.136  Sum_probs=111.7

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCC---eE--EeeC-------CCCceEE----eeceEEEeeecCCCCeEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNG---IT--ISNN-------ASAGRII----TNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~---~~--l~~~-------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+.+|++++|.|.+.+.|.+. +.|++..   ..  +...       ...+...    .+.+|.|.+++..|+|.|.|.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3r06_A           11 LPASLGDRVTINCQASQDISNY-LNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQ   89 (213)
T ss_dssp             EEECTTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEecCCCcEEEEEEeCCCcCce-EEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEe
Confidence            4678999999999999887666 9999821   11  1110       0111211    134899999999999999999


Q ss_pred             EEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeCCCCCCCCC-C
Q psy3823         194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSDTAPRP-L  271 (365)
Q Consensus       194 ~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~~-~  271 (365)
                      +.+..+........|.|..       ...+|.+........ +..|+.++|.|.+.+.+++ ..+.|+++|....... .
T Consensus        90 ~~~~~~~~~~~~~~l~V~~-------~~~~p~v~~~~~~~~-~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  161 (213)
T 3r06_A           90 QYYNYPWTFGPGTKLEIKR-------ADAKPTVSIFPPSSE-QLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQ  161 (213)
T ss_dssp             ECSSSSCEECCCEEEEECC-------CCBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred             cccCCceEEcCCceEEEec-------cCCCceeeeeCCCce-ecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEe
Confidence            9987654444556677731       115565554332222 4568889999999987653 2499999986543221 1


Q ss_pred             ceeE--eeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         272 TSYS--IQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       272 ~~~~--~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ....  ..++.   .+.|.|.....+|+|.|+|.|.|.....
T Consensus       162 ~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          162 SVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             ccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence            1111  12232   3467788888889999999999986543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.76  E-value=6.2e-18  Score=136.87  Aligned_cols=151  Identities=9%  Similarity=0.124  Sum_probs=107.5

Q ss_pred             ceEEEEecCCcEEEEEEeC--CCCCcceEEEEe--CCCcCCC----------CCCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          19 QRIYGALRNEQVLVSCTVD--ANPQAQYFTWAF--NNSGTAP----------RPLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~--~~p~~~~v~W~~--~~~~~l~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      ...+.+.+|++++|.|...  +.+.+ .|.|++  ++.. +.          ...+.....++   +|.|.+++.+|+|.
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~-~i~W~k~~~~~~-i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~   80 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDID-DIKWEKTSDKKK-IAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDI   80 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEE-EEEEEEGGGCCE-EEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCC-EEEEEECCCCcE-EEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEE
Confidence            3456678999999999532  34556 999999  8765 41          22222333555   79999999999999


Q ss_pred             EEEEEEeCCCCCc--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEE
Q psy3823          85 LLCWARNEQGNQR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITI  162 (365)
Q Consensus        85 Y~C~a~~~~~~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l  162 (365)
                      |+|.+.+..+...  ..+.|.|...      ..+|.+..            .+..+.|.|.+.+.|.+. +.|+++|..+
T Consensus        81 Y~c~~~n~~g~~~~~~~~~L~V~~~------~~~P~i~~------------~~~~v~L~C~~~~~p~~~-~~W~~~g~~l  141 (182)
T 1hnf_A           81 YKVSIYDTKGKNVLEKIFDLKIQER------VSKPKISW------------TCINTTLTCEVMNGTDPE-LNLYQDGKHL  141 (182)
T ss_dssp             EEEEEEETTSCEEEEEEEEEEEECC------CCCCEEEE------------ETTTTEEEEECSSCSSCE-EEEEESSCEE
T ss_pred             EEEEEEeCCCceeEEEEEEEEEcCc------CCCCEEEE------------ccCcEEEEeEccCCCCCE-EEEEECCEEC
Confidence            9999999877653  5677888311      23454433            233689999999888666 9999999888


Q ss_pred             eeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC
Q psy3823         163 SNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG  202 (365)
Q Consensus       163 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  202 (365)
                      ..        ....+.+.. ..+|+|.|+|.|.|..+...
T Consensus       142 ~~--------~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~  172 (182)
T 1hnf_A          142 KL--------SQRVITHKW-TTSLSAKFKCTAGNKVSKES  172 (182)
T ss_dssp             EE--------ESSCEEEEC-CSCEEEEEEEEEECSSCEEE
T ss_pred             CC--------CCcEEEEec-ccCCCcEEEEEEEeCCCCcE
Confidence            21        223344433 47899999999999998654

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.76  E-value=1.2e-16  Score=131.13  Aligned_cols=164  Identities=14%  Similarity=0.143  Sum_probs=116.1

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEeCCCCCcc-eEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~-~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      |.........+.+.+|++++|.|.+ +.|.+. .+.|++.+.. +.   ....  ......|.|.+++.+|+|.|.|.|.
T Consensus         7 ~~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~-l~---~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~   79 (210)
T 1gsm_A            7 PLQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTS-LG---AVQS--DTGRSVLTVRNASLSAAGTRVCVGS   79 (210)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTT-TC---CEEE--ESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CEEEeCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeecccc-cC---cEEe--cCCccEEEECccCcccCceEEEEEE
Confidence            4444433344788999999999998 776654 8999997766 51   1111  2334589999999999999999999


Q ss_pred             eCCCCCcccEEEEEEeccccCCCCCCCeEE-EEcCCccCccceecCCcEEEEEEEEec-CCC---CeeEEEeCCeEEeeC
Q psy3823          91 NEQGNQRTPCTFHVVKAGECEHPVDKPSVQ-IKLGRNLNASVLNEGVDIYFDCHIQAN-PPY---KKLIWTHNGITISNN  165 (365)
Q Consensus        91 ~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~---~~i~W~~~~~~l~~~  165 (365)
                      +..+.....+.|+|         +.+|... +.+      ..+.+|+.+ |.|.+.+. |.+   ..|.|++|+.+|...
T Consensus        80 n~~~~~~~~~~ltV---------~~~P~~~~i~~------~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~  143 (210)
T 1gsm_A           80 CGGRTFQHTVQLLV---------YAFPNQLTVSP------AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGA  143 (210)
T ss_dssp             ETTEEEEEEEEEEE---------EBCCSEEEEES------SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTC
T ss_pred             eCCCceEEEEEEEE---------EecCCCcEEcc------ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccc
Confidence            98877668899999         6777533 332      146678888 99999985 543   249999999998432


Q ss_pred             CCCc----------------eEEeeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823         166 ASAG----------------RIITNQTLVLQSVTRHSGGLYACSAINSQ  198 (365)
Q Consensus       166 ~~~~----------------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  198 (365)
                      ....                .....+++.+.....++.+.|+|+|.+..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L  192 (210)
T 1gsm_A          144 QALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRL  192 (210)
T ss_dssp             EECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEE
T ss_pred             cccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeC
Confidence            1000                11113345555777788899999999775

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.76  E-value=1.9e-17  Score=144.45  Aligned_cols=165  Identities=15%  Similarity=0.208  Sum_probs=115.6

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-ccE
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-TPC  100 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~~  100 (365)
                      ..+.+|+.+.|.|.+. .|.+ .++|++++.. .....  .......  .+     ...|+|.|+|.|.+..+... ..+
T Consensus       105 ~~v~~G~~v~l~C~~~-~p~~-~v~w~~~~~~-~~~~~--~~~~~~~--~~-----~~~d~G~Y~C~a~n~~~~~~s~~~  172 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT-DPQL-VVTLHEKKGD-VALPV--PYDHQRG--FS-----GIFEDRSYICKTTIGDREVDSDAY  172 (289)
T ss_dssp             EEESSCCCEEECCCBS-CTTS-CEEEEESSCC-SCCCC--CEETTTE--EE-----ECCCSSEEEEEEEETTEEEECCCE
T ss_pred             EEeecCCeEEEEeEcC-CCCc-eEEEEeCCCC-Cccce--eecCCcC--ee-----eeccCcEEEEEEEeCCceeeeeeE
Confidence            6688999999999976 6888 8999987633 22211  1111111  11     25699999999997666544 556


Q ss_pred             EEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCce-------EEe
Q psy3823         101 TFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR-------IIT  173 (365)
Q Consensus       101 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~-------~~~  173 (365)
                      .|.|..       ..+|.+.+.+..    ..+.+|+.+.|.|.+.+.|.+. +.|++++...........       ...
T Consensus       173 ~l~v~~-------~~~p~i~~~~~~----~~v~~G~~v~L~C~~~g~p~p~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~  240 (289)
T 3mjg_X          173 YVYRLQ-------VSSINVSVNAVQ----TVVRQGENITLMCIVIGNEVVN-FEWTYPRKESGRLVEPVTDFLLDMPYHI  240 (289)
T ss_dssp             EEEECC-------CCCCCCEEEESC----SEEETTSCEEEEEEEESCSSBE-EEEECTTSSSSCCCCCEEEESCTTTTEE
T ss_pred             EEEecC-------CCCCCcEEeCCc----ceeEcCCCEEEEEEECCCCCcc-eEEEcCCccCCCcccccccccCCcceEE
Confidence            777721       136666665532    4688999999999999988776 999987654322111111       123


Q ss_pred             eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         174 NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       174 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      ..+|.|.++..+|+|.|+|.|.|..|... ..+.|+|.
T Consensus       241 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~v~  277 (289)
T 3mjg_X          241 RSILHIPSAELEDSGTYTCNVTESVNDHQ-DEKAINIT  277 (289)
T ss_dssp             EEEEEESSCCSSCCEEEEEEEEETTTTEE-EEEEEEEE
T ss_pred             EEEEEEcccChhhCcEEEEEeecCCCCce-eEEEEEEE
Confidence            46899999999999999999999999766 67777777

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.76  E-value=4.3e-18  Score=139.57  Aligned_cols=155  Identities=11%  Similarity=0.134  Sum_probs=105.4

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeC---CC-------------CceE-EeeceEEEeeecCCCCeEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNN---AS-------------AGRI-ITNQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~---~~-------------~~~~-~~~~~l~i~~~~~~d~G~Y~C  192 (365)
                      ..+.+|++|+|.|.+.+.++...+.|++++..+...   ..             .+.. ..+.+|.|.+++..|+|.|.|
T Consensus         8 v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C   87 (193)
T 2if7_A            8 VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRA   87 (193)
T ss_dssp             EEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEEEEE
T ss_pred             EEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCceEEE
Confidence            357799999999998753333349999998765311   00             0111 135789999999999999999


Q ss_pred             EEEcCCCCCCcccEEEEEeeeeecccccCCCCc---eecCccceeeeecCc-eEEEEEEEeee-CCCceeEEEeCCCCCC
Q psy3823         193 SAINSQGEGGSTPFDLNINKMVNLIFNSIDEPV---CKQSQQRIYGALRNE-QVLVSCTVDAN-PQAQYFTWAFNNSDTA  267 (365)
Q Consensus       193 ~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~---~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~~~~W~~~~~~~~  267 (365)
                      .+.+..+... ..+.|.|.          .+|.   +.... .  ....|. .++|.|.+.+. |.+. +.|+++|... 
T Consensus        88 ~~~~~~~~~~-~~~~L~V~----------~~~~~p~i~~~~-~--~~~~g~~~v~L~C~~~g~~p~p~-i~W~~~g~~l-  151 (193)
T 2if7_A           88 QISTKTSAKL-SSYTLRIL----------RQLRNIQVTNHS-Q--LFQNMTCELHLTCSVEDADDNVS-FRWEALGNTL-  151 (193)
T ss_dssp             EEECSSCEEE-EEEEEEEE----------CCCEEEEEEECC-C-----CSSEEEEEEEEEESCCTTCE-EEEEETTEEE-
T ss_pred             EEEecCCCeE-EEEEEEEE----------ccCCCCeEecCc-e--eecCCCceEEEEEEEecCCCceE-EEEEeCCEEc-
Confidence            9998877544 46778887          4432   22211 1  133455 89999999985 4676 9999987521 


Q ss_pred             CCCCceeEeeCCCEEEEEEcCCCcc-cCeEEEEEEEcCCccceec
Q psy3823         268 PRPLTSYSIQDGSTSVARYTPTSEL-EYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       268 ~~~~~~~~~~~~~~s~l~i~~v~~~-d~G~Y~C~a~n~~g~~~~~  311 (365)
                               ..+.  .|.|.....+ |+|.|+|.|.|..|..+.+
T Consensus       152 ---------~~~~--~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          152 ---------SSQP--NLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             ---------ESSS--EEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             ---------CCCC--eEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence                     1222  3666544444 8999999999999988654

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.76  E-value=4.6e-17  Score=139.30  Aligned_cols=187  Identities=14%  Similarity=0.147  Sum_probs=115.5

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEe--CCeEEee---------------CCCCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTH--NGITISN---------------NASAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~--~~~~l~~---------------~~~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++|+|.|.+.+.+  .+. +.|++  .+..+..               ....+....      ..+|.|.+++.
T Consensus        11 ~~v~~G~~v~L~C~~~g~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   89 (253)
T 3uzq_A           11 ELVKPGASVRLSCTASGFNIKDTY-MSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTS   89 (253)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSC-EEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeecCCCcEEEEEEeeCCcccCce-EEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCc
Confidence            4678999999999998743  455 99998  2221110               001112221      22499999999


Q ss_pred             CCCeEEEEEEEcCCCCCCcccEEEEEeeeeec-----ccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC----c
Q psy3823         185 HSGGLYACSAINSQGEGGSTPFDLNINKMVNL-----IFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA----Q  255 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~-----~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~----~  255 (365)
                      +|+|.|.|.+.+..+........|.|......     .......|.+...+.. ..+.+|+.++|.|.+.+.|.+    .
T Consensus        90 ~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~~~  168 (253)
T 3uzq_A           90 GDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPAS-LAVSLGQRATISCRASENVDRYGNSF  168 (253)
T ss_dssp             GGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSE-EEECTTSCEEEEEEESSCCEETTEEC
T ss_pred             ccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCe-EEEeCCCCEEEEEEecCccccCCCcE
Confidence            99999999999866544334566777610000     0000012333333322 338899999999999988776    6


Q ss_pred             eeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc-eecEEEEEEcC
Q psy3823         256 YFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ-RTPCTFHVVKA  319 (365)
Q Consensus       256 ~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~  319 (365)
                       +.|++++......             ..+......+....|.|.+++.+|+|.|.|.|.|..+.. ..-..|.|...
T Consensus       169 -v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~  245 (253)
T 3uzq_A          169 -MHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRP  245 (253)
T ss_dssp             -EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred             -EEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCC
Confidence             9999853211111             122222334556679999999999999999999976432 23345555433

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=1.6e-16  Score=134.69  Aligned_cols=170  Identities=15%  Similarity=0.249  Sum_probs=110.9

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC----CcceEEEEeCCCcC-CC------------CCCceeEecCCeEEEEEEccCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP----QAQYFTWAFNNSGT-AP------------RPLTSYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p----~~~~v~W~~~~~~~-l~------------~~~~~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      +....+.+|+.++|.|.+.+.|    .+ .+.|+|+.... +.            ...+......+...+|.|.+++.+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   86 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRAGESVDIFGVG-FLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADD   86 (240)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEE-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEecCCCCEEEEEeCCCccccCCCc-eEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhh
Confidence            4567789999999999988887    66 99999964210 10            0111112223344589999999999


Q ss_pred             CeEEEEEEEeCCCC-CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC-CeeEEEeC-
Q psy3823          82 YGTLLCWARNEQGN-QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY-KKLIWTHN-  158 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~-~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~i~W~~~-  158 (365)
                      +|.|+|.+.+..+. ......|.|.....    ..+|.+.+...   ....+.+|++++|.|.+.+.|.+ ..+.|+++ 
T Consensus        87 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~----~~~~~~~~~~~---~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~  159 (240)
T 1moe_A           87 VATYYCQQTNEDPYTFGGGTKLEIKGGGS----GGGGEVQLQQS---GAELVEPGASVKLSCTASGFNIKDTYMHWVKQR  159 (240)
T ss_dssp             CEEEEEEECSSSSCCBCCCEEEEECCCSC----CCCCCCEEEEC---CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CEEEEEEEccCCceeecCCEEEEEecCCC----CCCceEEEeCC---CceEEeCCCcEEEEEEEcCccCCCCEEEEEEEC
Confidence            99999999987654 23567788732100    00222222222   23468899999999999987642 34999995 


Q ss_pred             -CeEEe----eC-----------CCCceEEe------eceEEEeeecCCCCeEEEEEEEc
Q psy3823         159 -GITIS----NN-----------ASAGRIIT------NQTLVLQSVTRHSGGLYACSAIN  196 (365)
Q Consensus       159 -~~~l~----~~-----------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~  196 (365)
                       +..+.    ..           ...+....      ..+|.|.+++.+|+|.|+|.+.+
T Consensus       160 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          160 PEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             TTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence             22211    00           01122221      24799999999999999999985

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.75  E-value=5e-17  Score=138.74  Aligned_cols=174  Identities=13%  Similarity=0.203  Sum_probs=109.8

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-------------CCCCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-------------APRPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-------------l~~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      ..+..+.+.+|+.++|.|.+.+.|.+ .+.|+|+....             .................|.|.+++.+|+|
T Consensus         9 ~~p~~~~v~~G~~v~L~C~~~~~~~~-~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   87 (250)
T 3esu_F            9 QSTSSLSASLGDRVTISCRASQDIRN-YLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIG   87 (250)
T ss_dssp             CSCSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ecCCEEEeeCCCcEEEEEEecccCCc-eEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCE
Confidence            34566778999999999998888999 99999964210             00011112223334458999999999999


Q ss_pred             EEEEEEEeCCCCCc-ccEEEEEEeccccC----------CCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecC--CC
Q psy3823          84 TLLCWARNEQGNQR-TPCTFHVVKAGECE----------HPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP--PY  150 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~-~~~~l~V~~~~~~~----------~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~  150 (365)
                      .|.|.+.+..+... ....|.|.......          ....++.....+    ....+.+|++++|.|.+.+.+  .+
T Consensus        88 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~G~~v~L~C~~~~~~~~~~  163 (250)
T 3esu_F           88 TYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQS----GPELVKPGASVKISCKDSGYAFSSS  163 (250)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC------------------------CEEC----CCEEECTTCCEEEEEECCSTTGGGS
T ss_pred             EEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecC----CceEEcCCceEEEEEEecCCcccCC
Confidence            99999988655432 44567772110000          000111112222    234678999999999998765  44


Q ss_pred             CeeEEEeC--CeEEeeC---------------CCCceEEe------eceEEEeeecCCCCeEEEEEEEc
Q psy3823         151 KKLIWTHN--GITISNN---------------ASAGRIIT------NQTLVLQSVTRHSGGLYACSAIN  196 (365)
Q Consensus       151 ~~i~W~~~--~~~l~~~---------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~  196 (365)
                      . +.|+++  +..+...               ...+....      ..+|.|.+++.+|+|.|.|.+.+
T Consensus       164 ~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          164 W-MNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             E-EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             E-EEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            4 999986  4332110               00112221      22699999999999999999997

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.75  E-value=1.7e-17  Score=140.24  Aligned_cols=170  Identities=12%  Similarity=0.145  Sum_probs=112.2

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCC--eE---Eee-------CCCCceEE----eeceEEEeeecCCCCeEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNG--IT---ISN-------NASAGRII----TNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~--~~---l~~-------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+.+|++++|.|.+.+.+.+. +.|+++.  ..   +..       ....+...    .+.+|.|.+++..|+|.|.|.
T Consensus        34 ~~v~~G~~v~L~C~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  112 (237)
T 3sob_L           34 LSASVGDRVTITCRASQDVSTA-VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQ  112 (237)
T ss_dssp             EEEETTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEeCCCcEEEEEecCCCCCce-EEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEe
Confidence            4678999999999999877666 9999832  11   110       00111111    245799999999999999999


Q ss_pred             EEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC--CceeEEEeCCCCCCCCC-
Q psy3823         194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ--AQYFTWAFNNSDTAPRP-  270 (365)
Q Consensus       194 ~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~~W~~~~~~~~~~~-  270 (365)
                      +.+..+........+.|..       ...+|.+........ +..|+.++|.|.+.+.++  +. +.|+++|....... 
T Consensus       113 ~~~~~~~~~~~~~~l~V~~-------~~~~p~v~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~~-v~W~k~g~~~~~~~~  183 (237)
T 3sob_L          113 QSYTTPPTFGQGTKVEIKR-------TVAAPSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAK-VQWKVDNALQSGNSQ  183 (237)
T ss_dssp             ECSSSSCEECCCEEEEEEC-------CCBCCEEEEECCCHH-HHHHTEEEEEEEEEEEBSSCCE-EEEEETTEECCSSEE
T ss_pred             eccCCceEEcCcEEEEEec-------CCCCCceEEeCCChh-hccCCceEEEEEEcccCCCceE-EEEEECCCCCCCcee
Confidence            9887754333455677751       114555543222211 446888999999988543  65 99999887543211 


Q ss_pred             CceeE--eeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823         271 LTSYS--IQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQR  309 (365)
Q Consensus       271 ~~~~~--~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~  309 (365)
                      .....  ..++.   .+.|.|..+..+|+|.|+|.|.|......
T Consensus       184 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  227 (237)
T 3sob_L          184 ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  227 (237)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             ecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCc
Confidence            11111  12232   35688999999999999999999876553

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.75  E-value=6.4e-17  Score=138.63  Aligned_cols=186  Identities=14%  Similarity=0.223  Sum_probs=115.0

Q ss_pred             ceecCCcEEEEEEEEecC--CCCeeEEEeC--CeEEee---------------CCCCceEEe------eceEEEeeecCC
Q psy3823         131 VLNEGVDIYFDCHIQANP--PYKKLIWTHN--GITISN---------------NASAGRIIT------NQTLVLQSVTRH  185 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~l~~---------------~~~~~~~~~------~~~l~i~~~~~~  185 (365)
                      .+.+|++|+|.|.+.+.+  .+. +.|++.  +..+..               ....+....      ..+|.|.+++..
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   91 (256)
T 3umt_A           13 LVKPGASVKISCKTSGYTFTEYT-MHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSE   91 (256)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSC-EEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEEecccccccE-EEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcc
Confidence            578999999999998755  455 999972  221110               001112211      234999999999


Q ss_pred             CCeEEEEEEEcCCC---CCCcccEEEEEeeeee-----ccccc-CCCCceecCccceeeeecCceEEEEEEEeeeCCCce
Q psy3823         186 SGGLYACSAINSQG---EGGSTPFDLNINKMVN-----LIFNS-IDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQY  256 (365)
Q Consensus       186 d~G~Y~C~~~~~~~---~~~s~~~~l~v~~~~~-----~~~~~-~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~  256 (365)
                      |+|.|.|.+.+..+   ........|.|.....     ..... ..+|.+...+.. ..+.+|+.++|.|.+.+.|.+. 
T Consensus        92 DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~v~~G~~v~L~C~~~~~~~~~-  169 (256)
T 3umt_A           92 DSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSS-LSASLGERVSITCRASQDIGSN-  169 (256)
T ss_dssp             GCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSE-EEECTTCCEEEEEEESSCCTTC-
T ss_pred             cCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCe-EEEECCCCEEEEEEEecCCCcE-
Confidence            99999999998722   1122446677761000     00000 013444433332 3388999999999999988887 


Q ss_pred             eEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc-eecEEEEEEcC
Q psy3823         257 FTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ-RTPCTFHVVKA  319 (365)
Q Consensus       257 ~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~  319 (365)
                      +.|++.+.....             ...+......+....|.|.+++.+|+|.|.|.|.|..+.. .....|.|..+
T Consensus       170 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~  246 (256)
T 3umt_A          170 LNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRA  246 (256)
T ss_dssp             EEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             EEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence            999985321111             0122333344556779999999999999999999865432 23456666544

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.75  E-value=8.4e-18  Score=144.99  Aligned_cols=173  Identities=15%  Similarity=0.280  Sum_probs=116.1

Q ss_pred             cceecCCcEEEEEEEE---ecCCCCeeEEEeCCeEEee-------CC---------CCceEE------eeceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQ---ANPPYKKLIWTHNGITISN-------NA---------SAGRII------TNQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~---~~p~~~~i~W~~~~~~l~~-------~~---------~~~~~~------~~~~l~i~~~~~  184 (365)
                      ..+.+|+++.|.|.+.   +.+.+. +.|++++.....       ..         ..+...      .+.+|.|.+++.
T Consensus        15 ~~v~~G~~v~L~C~~~~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   93 (268)
T 3mj6_A           15 LRVHVGESVLMGCVVQRTEEKHVDR-VDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQK   93 (268)
T ss_dssp             EEEETTCCEEECCBCCCSSCCCEEE-EEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCG
T ss_pred             eEEecCCcEEEEEEeecCCCCceEE-EEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCH
Confidence            4678999999999987   555544 999985431100       00         011222      136899999999


Q ss_pred             CCCeEEEEEEEcCCCCC-CcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEE---eeeCCCceeEEE
Q psy3823         185 HSGGLYACSAINSQGEG-GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV---DANPQAQYFTWA  260 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~~-~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~~~~W~  260 (365)
                      +|+|.|+|.+.+..+.. .+..+.|.|..         ..|       ....+..|+.++|.|.+   .+.|.+. +.|+
T Consensus        94 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~---------~~p-------~~~~v~~G~~v~L~C~~~~~~~~p~~~-v~W~  156 (268)
T 3mj6_A           94 ADEGIYTCEIRLKNESMVMKKPVELWVLP---------EEP-------RDLRVRVGDTTQMRCSIQSTEEKRVTK-VNWM  156 (268)
T ss_dssp             GGCEEEEEEEEETTCCCEEEEEEEEEEEC---------CCC-------SEEEEETTCCEEECCBCEESSSSCCCE-EEEE
T ss_pred             hHCEEEEEEEEecCCcceEEEEEEEEEec---------cCC-------CccccccCCcEEEEEEecCCCCCCccc-eEEE
Confidence            99999999999876543 23344555540         112       12338899999999999   4568887 9999


Q ss_pred             eCCCCCCCCCC---------------------ceeEe--eCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         261 FNNSDTAPRPL---------------------TSYSI--QDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       261 ~~~~~~~~~~~---------------------~~~~~--~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      +++........                     +..+.  .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  236 (268)
T 3mj6_A          157 FSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV  236 (268)
T ss_dssp             EECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence            95432211100                     00000  01224469999999999999999999999999999999886


Q ss_pred             cCc
Q psy3823         318 KAG  320 (365)
Q Consensus       318 ~~~  320 (365)
                      ..+
T Consensus       237 ~~~  239 (268)
T 3mj6_A          237 QDE  239 (268)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.75  E-value=1e-16  Score=136.20  Aligned_cols=173  Identities=13%  Similarity=0.143  Sum_probs=108.9

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CC------------CCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-AP------------RPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +....+.+|++++|.|.+.+.|.+ .+.|+|+.... ..            ...+...........|.|.+++.+|+|.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   86 (242)
T 2znx_A            8 PATLSVTPGNSVSLSCRASQSIGN-NLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (242)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCCc-eEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEE
Confidence            456778999999999998888888 99999964210 10            01111122233455899999999999999


Q ss_pred             EEEEEeCCCCCc-ccEEEEEEeccccCC----CCCCCeEEEEcCCccCccceecCCcEEEEEEEEecC--CCCeeEEEeC
Q psy3823          86 LCWARNEQGNQR-TPCTFHVVKAGECEH----PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP--PYKKLIWTHN  158 (365)
Q Consensus        86 ~C~a~~~~~~~~-~~~~l~V~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~  158 (365)
                      .|.+.+..+... ....|.|........    ...++.....+    ....+.+|++++|.|.+.+.+  .+. +.|+++
T Consensus        87 ~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~G~~v~L~C~~~g~~~~~~~-v~W~k~  161 (242)
T 2znx_A           87 FCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQES----GPSLVKPSQTLSLTCSVTGDSITSDY-XSXIRK  161 (242)
T ss_dssp             EEEECSSSSCEECCCEEEEEC---------------CCEEEEE----CCSEECTTSCEEEEEEEESSCGGGSC-EEEEEE
T ss_pred             EEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecC----CcceecCCCeEEEEEEEEccccCCcc-eeeEee
Confidence            999998754321 456777721100000    00011122222    223578999999999999865  344 999984


Q ss_pred             --CeEEe----e--C--------CCCceEEe------eceEEEeeecCCCCeEEEEEEEcC
Q psy3823         159 --GITIS----N--N--------ASAGRIIT------NQTLVLQSVTRHSGGLYACSAINS  197 (365)
Q Consensus       159 --~~~l~----~--~--------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~  197 (365)
                        +..+.    .  .        ...+....      ..+|.|.+++.+|+|.|.|.+.|.
T Consensus       162 ~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          162 FPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             CTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence              33221    0  0        01122221      248999999999999999999874

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.75  E-value=1.4e-16  Score=138.15  Aligned_cols=188  Identities=9%  Similarity=-0.013  Sum_probs=113.8

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCe-----EEeeC-------CCCceEEe----eceEEEeeecCCCCeEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGI-----TISNN-------ASAGRIIT----NQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~-----~l~~~-------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+.+|++++|.|.+.+.|.+. +.|++++.     .+...       ...+....    ..+|.|.+++..|+|.|.|.
T Consensus        22 ~~v~~G~~v~L~C~~~~~p~~~-i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  100 (276)
T 3auv_A           22 LSASVGDRVTITCRASQDVSTA-VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQ  100 (276)
T ss_dssp             EECCTTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEcCCCCEEEEeEcCCCCCCc-EEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEEE
Confidence            4688999999999999887766 99998531     22110       01122221    23899999999999999999


Q ss_pred             EEcCCCCCCcccEEEEEeeeeecc---cccCCCCceecCccceeeeecCceEEEEEEEeeeC--CCceeEEEeCCCCCCC
Q psy3823         194 AINSQGEGGSTPFDLNINKMVNLI---FNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSDTAP  268 (365)
Q Consensus       194 ~~~~~~~~~s~~~~l~v~~~~~~~---~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~~W~~~~~~~~~  268 (365)
                      +.|..+...+....|.|.......   ......|.+.........+.+|+.++|.|.+.+.|  .+. +.|++++.....
T Consensus       101 ~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~-v~W~k~~~g~~~  179 (276)
T 3auv_A          101 QHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYW-IHWVRQAPGKCL  179 (276)
T ss_dssp             ECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSE-EEEEEECTTCCE
T ss_pred             EecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCE-EEEEEcCCCCCc
Confidence            998766434345667776110000   00000122211111223488999999999999876  365 999996421110


Q ss_pred             ------------------CCCceeEee--CCCEEEEEEcCCCcccCeEEEEEEEcCC---cc--ceecEEEEEEcC
Q psy3823         269 ------------------RPLTSYSIQ--DGSTSVARYTPTSELEYGTLLCWARNEQ---GS--QRTPCTFHVVKA  319 (365)
Q Consensus       269 ------------------~~~~~~~~~--~~~~s~l~i~~v~~~d~G~Y~C~a~n~~---g~--~~~~~~l~v~~~  319 (365)
                                        ...++....  ......|.|.+++.+|+|.|.|.|.|..   +.  -.....|.|.+.
T Consensus       180 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~  255 (276)
T 3auv_A          180 EWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSA  255 (276)
T ss_dssp             EEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC--
T ss_pred             EEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEccc
Confidence                              111222222  2345579999999999999999999983   21  123345666544

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.75  E-value=1.4e-17  Score=139.52  Aligned_cols=172  Identities=12%  Similarity=0.126  Sum_probs=113.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-CC-------C------------CCceeEe--cCCeEEEEEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-AP-------R------------PLTSYSI--QDGSTSVARY   74 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l~-------~------------~~~~~~~--~~~~~~~l~i   74 (365)
                      +....+.+|+.++|.|.+.+.|  .+ .+.|+|+.... ..       .            ..+....  .......|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDY-YMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM   85 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCC-cEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence            3445788999999999976655  55 99999864210 10       0            0111111  1123458999


Q ss_pred             ccCCCCCCeEEEEEEEeCCC-----CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-C
Q psy3823          75 TPTSELEYGTLLCWARNEQG-----NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-P  148 (365)
Q Consensus        75 ~~~~~~d~G~Y~C~a~~~~~-----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p  148 (365)
                      .+++.+|+|.|.|.+.+..+     .......|.|..     .+..+|.+.+....    ..+.+|+.++|.|.+.|. |
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~-----~~~~~P~i~~~~~~----~~~~~g~~v~L~C~~~g~~P  156 (222)
T 1q9r_B           86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSA-----AKTTPPSVYPLAPG----SAAQTNSMVTLGCLVKGYFP  156 (222)
T ss_dssp             CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECS-----SCCBCCEEEEECCC----SCCCCSSEEEEEEEEEEEBS
T ss_pred             CcCCcccCeEEEEEEeccCCcccceEeCCceEEEecc-----CCCCCCeEEEcccc----ccccCCCcEEEEEEEccEEC
Confidence            99999999999999998654     112456777731     01235666554322    235689999999999985 7


Q ss_pred             CCCeeEEEeCCeEEeeCC-----CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         149 PYKKLIWTHNGITISNNA-----SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       149 ~~~~i~W~~~~~~l~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      .+..+.|+++|..+....     ..+.....+.|.|.++...| |.|+|.|.|..+..
T Consensus       157 ~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~  213 (222)
T 1q9r_B          157 EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  213 (222)
T ss_dssp             SCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             CCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCC
Confidence            763599999886542210     01111223578898888889 99999999988743

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.75  E-value=1.4e-17  Score=142.10  Aligned_cols=172  Identities=16%  Similarity=0.273  Sum_probs=110.0

Q ss_pred             ceecCCcEEEEEEEEecCCCC----eeEEEeCCeEEe------e---------CCCCceE-----EeeceEEEeeecCCC
Q psy3823         131 VLNEGVDIYFDCHIQANPPYK----KLIWTHNGITIS------N---------NASAGRI-----ITNQTLVLQSVTRHS  186 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~----~i~W~~~~~~l~------~---------~~~~~~~-----~~~~~l~i~~~~~~d  186 (365)
                      .+.+|++++|.|.+.+.|.+.    .+.|++++....      .         .......     ..+.+|.|.+++..|
T Consensus        14 ~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D   93 (248)
T 3pv7_A           14 ITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEE   93 (248)
T ss_dssp             EEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGG
T ss_pred             EEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHH
Confidence            577999999999999876654    599998532110      0         0000000     013459999999999


Q ss_pred             CeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCC-ceeEEEeCCC
Q psy3823         187 GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQA-QYFTWAFNNS  264 (365)
Q Consensus       187 ~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~~W~~~~~  264 (365)
                      +|.|+|.+.+..+... ..+.|.|.          .+|.+.......  +..|+.+.|.|.+.+ .|.+ . +.|+++|.
T Consensus        94 ~G~Y~C~~~~~~~~~~-~~~~L~V~----------~~P~v~~~~~~~--~~~~~~~~L~C~~~g~~P~pi~-v~W~k~g~  159 (248)
T 3pv7_A           94 AGEYRCEVVVTPLKAQ-GTVQLEVV----------ASPASRLLLDQV--GMKENEDKYMCESSGFYPEAIN-ITWEKQTQ  159 (248)
T ss_dssp             CEEEEEEEEETTEEEE-EEEEEEEE----------BCCEEEEECC----------CEEEEEEEEEBSSCCE-EEEEEECS
T ss_pred             CeEEEEEEEeCCccce-eEEEEEEe----------cCCceEEecCCc--cccCCCcEEEEEEccEECCCeE-EEEEECCc
Confidence            9999999998776443 56788888          777765433321  456788889999998 7888 6 99999986


Q ss_pred             CCCCCC----C----ceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc--eecEEEEE
Q psy3823         265 DTAPRP----L----TSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ--RTPCTFHV  316 (365)
Q Consensus       265 ~~~~~~----~----~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~v  316 (365)
                      ......    .    ......++.   .+.|.|.....+|.|.|+|.|.|..+..  +..+.|.|
T Consensus       160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          160 KFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             SSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             cCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            432110    0    011122232   3568888999999999999999999874  44555555

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.75  E-value=5.8e-18  Score=140.39  Aligned_cols=166  Identities=16%  Similarity=0.146  Sum_probs=107.9

Q ss_pred             EecCCcEEEEEEeCCCC---CcceEEEEeCCCcCCCCCCce--eEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          24 ALRNEQVLVSCTVDANP---QAQYFTWAFNNSGTAPRPLTS--YSIQDG---STSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~p---~~~~v~W~~~~~~~l~~~~~~--~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      +.+|++++|.|.+.+.|   ....+.|+|++.. +......  ....++   ....|.|.+++.+|+|.|+|.|.+..+.
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~   93 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVE-VHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP   93 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEE-ECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCcc-ccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCC
Confidence            67899999999966663   3238999999976 4422110  001111   2347999999999999999999998775


Q ss_pred             CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEEeCCeEEeeCCCCc-eEEe
Q psy3823          96 QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWTHNGITISNNASAG-RIIT  173 (365)
Q Consensus        96 ~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~~~~-~~~~  173 (365)
                      ......+.+.     .....+|.+.+.+...    ...+|+.+.|.|.+.|. |++..+.|++||..+....... ....
T Consensus        94 ~~~~~~v~~~-----~~~~~~P~v~~~~~~~----~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~  164 (207)
T 2vol_A           94 APIEKTISKT-----KGRPKAPQVYTLPPPK----EQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDT  164 (207)
T ss_dssp             SCEEEEECCC-----CCCCBCCEEEEECCCT----GGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECT
T ss_pred             CceEEEeccC-----CCCCcCCeEEEeCCCH----HHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECC
Confidence            4322222110     0014578777665431    23369999999999985 4444699999999874321111 1111


Q ss_pred             ------eceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         174 ------NQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       174 ------~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                            ...|.+.....+|.|.|+|.|.|...
T Consensus       165 ~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          165 DGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             TSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             CCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence                  23456666666789999999999865

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.75  E-value=2e-18  Score=145.42  Aligned_cols=175  Identities=15%  Similarity=0.256  Sum_probs=116.1

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeE-----Eee----CC--CCce-----------EEeeceEEEeeecCCCC
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGIT-----ISN----NA--SAGR-----------IITNQTLVLQSVTRHSG  187 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~-----l~~----~~--~~~~-----------~~~~~~l~i~~~~~~d~  187 (365)
                      ..+.+|+++.|.|.+.+.+.+..+.|++++..     +..    ..  ..+.           ...++.|.|.+++..|+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~~D~   89 (231)
T 2pet_A           10 VEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDE   89 (231)
T ss_dssp             EEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCGGGC
T ss_pred             EEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCcccC
Confidence            35789999999999988775234999974332     210    00  0011           22245699999999999


Q ss_pred             eEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCC---ceecCccceeeeecCceE-EEEEEE-eeeCCCceeEEEeC
Q psy3823         188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEP---VCKQSQQRIYGALRNEQV-LVSCTV-DANPQAQYFTWAFN  262 (365)
Q Consensus       188 G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p---~~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~~~~W~~~  262 (365)
                      |.|+|.+.+..+...+..+.|.|.          .+|   .+...... ..+..|+.+ .|.|.+ .+.|.+. +.|+++
T Consensus        90 G~Y~C~~~~~~~~~~~~~~~l~V~----------~~p~~~~~~~~~~~-~~~~~g~~~~~l~C~~~~~~p~p~-i~W~~~  157 (231)
T 2pet_A           90 RDYVCVVRAGAAGTAEATARLNVF----------AKPEATEVSPNKGT-LSVMEDSAQEIATCNSRNGNPAPK-ITWYRN  157 (231)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEEE----------BCCCCCEEEECCSS-CCTTCCSEEEEEEEEEEEEBSCCE-EEEEET
T ss_pred             ceEEEEEEecCCCceEEEEEEEEE----------ecCCCcEEecCCcc-eeecCCCceEEEEEEeECcccCCE-EEEEEC
Confidence            999999998873333467788887          443   33333322 226688887 999999 8899998 999999


Q ss_pred             CCCCCCCC---CceeEe------eCCC---EEEEEEcCCCcccCeEEEEEEEc-----CCcc-ceecEEEEE
Q psy3823         263 NSDTAPRP---LTSYSI------QDGS---TSVARYTPTSELEYGTLLCWARN-----EQGS-QRTPCTFHV  316 (365)
Q Consensus       263 ~~~~~~~~---~~~~~~------~~~~---~s~l~i~~v~~~d~G~Y~C~a~n-----~~g~-~~~~~~l~v  316 (365)
                      |.......   ....+.      .++.   .+.|.|.....+|.|.|+|.|.|     ..|. .+..+.|.|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          158 GQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             TEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             CccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            87554433   122221      1111   25688876666679999999999     4555 555555544

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.75  E-value=2.7e-17  Score=139.26  Aligned_cols=173  Identities=13%  Similarity=0.165  Sum_probs=107.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C---------------CCCCceeEe-cCCeEEEEEEccCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A---------------PRPLTSYSI-QDGSTSVARYTPTSELE   81 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l---------------~~~~~~~~~-~~~~~~~l~i~~~~~~d   81 (365)
                      +..+.+.+|++++|.|. .+.|.+ .+.|+|+.... +               ....+.... ......+|.|.+++.+|
T Consensus         7 p~~~~v~~G~~v~L~C~-~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D   84 (238)
T 2p1y_A            7 PRNKVAVTGGKVTLSCN-QTNNHN-NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQ   84 (238)
T ss_dssp             CSEEEEETTCCEEEEEE-ECSCCS-EEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGG
T ss_pred             ccceEEeCCCEEEEEee-cCCCCc-cEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCccc
Confidence            45677899999999999 567888 99999962110 0               001111111 12234479999999999


Q ss_pred             CeEEEEEEEeCCCCCc-----ccEEEEEEeccccCCC---CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCee
Q psy3823          82 YGTLLCWARNEQGNQR-----TPCTFHVVKAGECEHP---VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKL  153 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~~~-----~~~~l~V~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i  153 (365)
                      +|.|+|.+.+..+...     ....|.|........|   ...+.+...+    ....+.+|++++|.|.+.+.|.+. +
T Consensus        85 sG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p----~~~~v~~G~~v~L~C~~~~~p~~~-i  159 (238)
T 2p1y_A           85 TSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSP----QSLTVWEGETAILNCSYENSAFDY-F  159 (238)
T ss_dssp             CEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEEC----SEEEEETTSCEEEEEECCCTTCCE-E
T ss_pred             CeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccC----ceEEEeCCCeEEEEEEEecCCCCc-E
Confidence            9999999998755211     3456777311000000   0001333333    234688999999999999888776 9


Q ss_pred             EEEeCC--e---EEee-C------CCCceEEe------eceEEEeeecCCCCeEEEEEEEcCC
Q psy3823         154 IWTHNG--I---TISN-N------ASAGRIIT------NQTLVLQSVTRHSGGLYACSAINSQ  198 (365)
Q Consensus       154 ~W~~~~--~---~l~~-~------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~  198 (365)
                      .|++++  .   .+.. .      ...+....      ..+|.|.+++.+|+|.|+|.+.|..
T Consensus       160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            999853  1   1110 0      00112211      3589999999999999999999873

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.75  E-value=4.4e-18  Score=142.34  Aligned_cols=166  Identities=16%  Similarity=0.170  Sum_probs=107.6

Q ss_pred             EecCCcEEEEEEeCCC---CC-cceEEEEeCCCcCCCCCCceeE-e-cCC---eEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          24 ALRNEQVLVSCTVDAN---PQ-AQYFTWAFNNSGTAPRPLTSYS-I-QDG---STSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~---p~-~~~v~W~~~~~~~l~~~~~~~~-~-~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      +.+|++++|.|.+.+.   |. + .++|+|++.. +........ . .++   ..+.|.|.+++.+|+|.|+|.|.+..+
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~  100 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDV-QISWFVNNVE-VHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDL  100 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCE-EEEEEETTEE-ECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTC
T ss_pred             hccCCCeeEEEEEcCCccCCCce-EEEEEECCcc-ccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcC
Confidence            6789999999996555   34 5 9999999976 543221111 1 111   234799999999999999999999866


Q ss_pred             CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCCce-EE
Q psy3823          95 NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASAGR-II  172 (365)
Q Consensus        95 ~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~~~-~~  172 (365)
                      .......+.. ..    ....+|.+.+.+...    ...+|+.++|.|.+.| +|.+..+.|++||..+........ ..
T Consensus       101 ~~~~~~~v~~-~~----~~~~~P~v~~~~~~~----~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~  171 (218)
T 2rgs_A          101 PSPIERTISK-IK----GLVRAPQVYILPPPA----EQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLD  171 (218)
T ss_dssp             SSCEEEEECC-CC----CCCBCCEEEEECCCG----GGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEEC
T ss_pred             CCcceEEEee-cC----CCCCCCEEEEECCCh----HHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEEC
Confidence            4421112110 00    014578777655331    2236999999999998 566546999999998743211111 11


Q ss_pred             ee------ceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         173 TN------QTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       173 ~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .+      ..|.+.....+|.|.|+|.|.|....
T Consensus       172 ~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          172 SDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             TTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             CCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            12      33555555556799999999997653

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.74  E-value=1.5e-17  Score=138.15  Aligned_cols=171  Identities=11%  Similarity=0.153  Sum_probs=112.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-CC----------------CCCceeEe--cCCeEEEEEEccC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-AP----------------RPLTSYSI--QDGSTSVARYTPT   77 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l~----------------~~~~~~~~--~~~~~~~l~i~~~   77 (365)
                      +....+.+|++++|.|.+.+.|  .+ .+.|+|++... ..                ...+....  .......|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   85 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSD-YWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV   85 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGS-CEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCC-cEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence            3445688999999999976665  35 99999863210 10                01111111  1223458999999


Q ss_pred             CCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEE
Q psy3823          78 SELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWT  156 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~  156 (365)
                      +.+|+|.|+|.+.+.. .......|.|..     .+..+|.+...+..    ..+.+|+.++|.|.+.+. |.+..+.|+
T Consensus        86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~-----~~~~~P~v~~~~~~----~~~~~g~~v~L~C~~~g~~P~p~~v~W~  155 (210)
T 3d9a_H           86 TTEDTATYYCANWDGD-YWGQGTLVTVSA-----AKTTPPSVYPLAPG----SAAQTNSMVTLGCLVKGYFPEPVTVTWN  155 (210)
T ss_dssp             CGGGCEEEEEEETTSS-CBCCCEEEEECC-----CCCBCCEEEEECCT----TSCCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CcccCEEEEEEEecCc-ccccceEEEecc-----CCCCCCEEEEecCC----cccccCCcEEEEEEEeeEecCCcEEEEe
Confidence            9999999999998763 222446777731     01235665544322    246789999999999986 766359999


Q ss_pred             eCCeEEeeCCCC-----ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         157 HNGITISNNASA-----GRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       157 ~~~~~l~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      +++..+......     +.......|.|.+...+| |.|+|.|.|..+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  204 (210)
T 3d9a_H          156 SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  204 (210)
T ss_dssp             GGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTE
T ss_pred             eCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            988753211111     112224578898888877 99999999988743

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.74  E-value=2.8e-16  Score=134.71  Aligned_cols=175  Identities=15%  Similarity=0.214  Sum_probs=108.6

Q ss_pred             cceecCCcEEEEEEEEecC-CCCeeEEEeC--CeE--Ee--e----------CCCCceEEe------eceEEEeeecCCC
Q psy3823         130 SVLNEGVDIYFDCHIQANP-PYKKLIWTHN--GIT--IS--N----------NASAGRIIT------NQTLVLQSVTRHS  186 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p-~~~~i~W~~~--~~~--l~--~----------~~~~~~~~~------~~~l~i~~~~~~d  186 (365)
                      ..+.+|++|+|.|.+.+.+ +...+.|++.  +..  +.  .          ....+....      ..+|.|.+++.+|
T Consensus        18 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   97 (257)
T 3gkz_A           18 SLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSED   97 (257)
T ss_dssp             SEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhh
Confidence            4688999999999999843 2334999982  111  11  0          001112221      2269999999999


Q ss_pred             CeEEEEEEEcCCCCC---CcccEEEEEeeeee----cccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeE
Q psy3823         187 GGLYACSAINSQGEG---GSTPFDLNINKMVN----LIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFT  258 (365)
Q Consensus       187 ~G~Y~C~~~~~~~~~---~s~~~~l~v~~~~~----~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~  258 (365)
                      +|.|.|.+.+..+..   ......|.|..+..    +.......|.+...+.. ..+.+|+.++|.|.+.+.+.+ . +.
T Consensus        98 sG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~-v~  175 (257)
T 3gkz_A           98 TATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAI-MSASPGEKVTLTCSASSSVSSSH-LY  175 (257)
T ss_dssp             CEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSE-EEECTTCCEEEEEEESSCCCGGG-EE
T ss_pred             CEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCce-EEEeCCCcEEEEEEEccCccceE-EE
Confidence            999999999873221   22345677762100    00000012333333332 348899999999999988777 6 99


Q ss_pred             EEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         259 WAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       259 W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      |++.+......             ..+......+....|.|.+++.+|+|.|.|.|.|...
T Consensus       176 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  236 (257)
T 3gkz_A          176 WYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFP  236 (257)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             EEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCc
Confidence            99853211111             1222223344566799999999999999999988543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.74  E-value=8.7e-18  Score=139.82  Aligned_cols=163  Identities=15%  Similarity=0.275  Sum_probs=109.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCC-------CCcceEEEEeCCCcC-----CC-----------CCCceeEecC--CeEEEEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDAN-------PQAQYFTWAFNNSGT-----AP-----------RPLTSYSIQD--GSTSVAR   73 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~-------p~~~~v~W~~~~~~~-----l~-----------~~~~~~~~~~--~~~~~l~   73 (365)
                      +..+.+.+|+.++|.|.....       +.+ .+.|+|++...     +.           ...+.....+  ....+|.
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPL-YVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCE-EEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCce-EEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            456788999999999995432       456 99999987530     10           0011111111  1233799


Q ss_pred             EccCCCCCCeEEEEEEEeCCCCC----cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec--
Q psy3823          74 YTPTSELEYGTLLCWARNEQGNQ----RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN--  147 (365)
Q Consensus        74 i~~~~~~d~G~Y~C~a~~~~~~~----~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~--  147 (365)
                      |.+++.+|+|.|.|.+.+..+..    ...+.|.|...      ..+|.+..  .     ..+.+|+.++|.|.+.+.  
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~------~~~p~i~~--~-----~~~~~G~~v~L~C~~~~~~~  152 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL------IEKPDIHF--L-----EPLESGRPTRLSCSLPGSCE  152 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECC------CCCCEEC---------CCCCTTCCEEEEEECTTCCS
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecC------CCCCceec--C-----ccccCCCeEEEEEEeccCCC
Confidence            99999999999999999875321    25678888321      22455433  1     136789999999999764  


Q ss_pred             --CCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         148 --PPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       148 --p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                        |.+. +.|++++..+...    .....+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       153 ~~p~p~-v~W~~~~~~~~~~----~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~  202 (214)
T 2zg1_A          153 AGPPLT-FSWTGNALSPLDP----ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQ  202 (214)
T ss_dssp             CSSCCE-EEEESSTTSSSCS----SCCCSSEEEECCCTTCCSCEEEEEEECC---
T ss_pred             CCCCce-EEEeCCCCccCCC----CceeEEEEEEecccHHcCcEEEEEEEeCCCC
Confidence              5555 9999988643211    1134578999999999999999999997643

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.74  E-value=1.5e-17  Score=139.00  Aligned_cols=174  Identities=13%  Similarity=0.190  Sum_probs=109.5

Q ss_pred             cceecCCcEEEEEEEEecC-CCCeeEEEeC--CeEEee----C-----------CCCceEEe------eceEEEeeecCC
Q psy3823         130 SVLNEGVDIYFDCHIQANP-PYKKLIWTHN--GITISN----N-----------ASAGRIIT------NQTLVLQSVTRH  185 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p-~~~~i~W~~~--~~~l~~----~-----------~~~~~~~~------~~~l~i~~~~~~  185 (365)
                      ..+.+|++++|.|.+.+.+ ....+.|+++  +..+..    .           ...+....      ..+|.|.+++..
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (219)
T 1c1e_H           10 ELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNE   89 (219)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcc
Confidence            3578999999999999765 2334999986  332210    0           01122221      358999999999


Q ss_pred             CCeEEEEEEEcCCCC---CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCC-ceeEEE
Q psy3823         186 SGGLYACSAINSQGE---GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQA-QYFTWA  260 (365)
Q Consensus       186 d~G~Y~C~~~~~~~~---~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~~W~  260 (365)
                      |+|.|.|.+.+..+.   .....+.|.|...      ...+|.+....... .+..|+.+.|.|.+.+ .|.| . +.|+
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~------~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~-v~W~  161 (219)
T 1c1e_H           90 DMATYFCARGTTIVRAMDYWGQGTSLTVSSA------KTTPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVT-VTWN  161 (219)
T ss_dssp             GCEEEEEEEEETTTTEEEEECCCEEEEECCC------CCBCCEEEEECCCS-SSCCSSEEEEEEEEEEEBSSCCE-EEEG
T ss_pred             cCEEEEEEEeccCcccceeecCceEEEEecC------CCCCCeEEEecCcc-ccccCCeEEEEEEcccccCCCeE-EEEE
Confidence            999999999987632   1223466777610      00124443222111 2568999999999998 7888 6 9999


Q ss_pred             eCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         261 FNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      ++|........... ...+.   .+.|.|.... .|.|.|+|.|.|..|.......
T Consensus       162 ~~g~~~~~~~~~~~-~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~~  215 (219)
T 1c1e_H          162 SGSLSSGVHTFPAV-LQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDKK  215 (219)
T ss_dssp             GGTBCTTEEECCCE-ESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEEE
T ss_pred             eCCcccceEecCCc-ccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEEe
Confidence            98764211100011 11122   3468885544 4669999999999887654433

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.74  E-value=7.7e-17  Score=140.23  Aligned_cols=187  Identities=13%  Similarity=0.134  Sum_probs=117.4

Q ss_pred             CceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-CC-----------------CCCceeEe--cCCeEEEEEEc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-AP-----------------RPLTSYSI--QDGSTSVARYT   75 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l~-----------------~~~~~~~~--~~~~~~~l~i~   75 (365)
                      ++....+.+|++++|.|...+.|  .+ .+.|+|++... +.                 ...+....  .......|.|.
T Consensus        32 ~p~~~~v~~G~~v~L~C~~~g~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  110 (282)
T 1qok_A           32 QSGAELVRSGTSVKLSCTASGFNIKDS-YMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS  110 (282)
T ss_dssp             ECCCEEEETTCCEEEEEEEESSCGGGS-CEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEeCCCeEEEEEeccCCCCCCc-eEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence            34567789999999999976665  46 99999965210 10                 00111111  12345689999


Q ss_pred             cCCCCCCeEEEEEEEeCCCC---C--cccEEEEEEeccccC------CCCCCCeEEEEcCCccCccceecCCcEEEEEEE
Q psy3823          76 PTSELEYGTLLCWARNEQGN---Q--RTPCTFHVVKAGECE------HPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI  144 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~~---~--~~~~~l~V~~~~~~~------~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~  144 (365)
                      +++.+|+|.|.|.+.+..+.   .  ...+.|.|.......      ....++.+...+    ....+.+|++++|.|.+
T Consensus       111 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~v~~G~~v~L~C~~  186 (282)
T 1qok_A          111 SLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSP----AIMSASPGEKVTITCSA  186 (282)
T ss_dssp             SCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEEC----SEEEECTTCCEEEEEEE
T ss_pred             cCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCC----CEEEEcCCCcEEEEEEe
Confidence            99999999999999987651   1  134577773211000      000122333322    23467899999999999


Q ss_pred             EecCCCCeeEEEe--CCeEEee---C-------CCCceEE----eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         145 QANPPYKKLIWTH--NGITISN---N-------ASAGRII----TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       145 ~~~p~~~~i~W~~--~~~~l~~---~-------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      .+.+ +. +.|++  +|..+..   .       ...+...    ...+|.|.+++.+|+|.|+|.+.+...........|
T Consensus       187 ~~~~-~~-v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l  264 (282)
T 1qok_A          187 SSSV-SY-MHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKL  264 (282)
T ss_dssp             SSCC-SC-CEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEE
T ss_pred             cCCC-ce-EEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEE
Confidence            9887 55 99999  5554321   0       0111211    145799999999999999999987544333344566


Q ss_pred             EEe
Q psy3823         209 NIN  211 (365)
Q Consensus       209 ~v~  211 (365)
                      .|.
T Consensus       265 ~V~  267 (282)
T 1qok_A          265 ELK  267 (282)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            665

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.74  E-value=2.4e-17  Score=141.41  Aligned_cols=172  Identities=15%  Similarity=0.119  Sum_probs=109.3

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCC--CcCCC----------------CCCceeEec--CCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNN--SGTAP----------------RPLTSYSIQ--DGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~--~~~l~----------------~~~~~~~~~--~~~~~~l~i~~~   77 (365)
                      ....+.+|+.++|.|.+.+.|  .+ .+.|+|++  .. +.                ...+.....  .....+|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~p~~~~-~v~W~k~~~g~~-~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (257)
T 1f3r_B            8 GPGLVRPSETLSLTCTVSGFSLTSF-SVSWVRHPSGKG-PEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL   85 (257)
T ss_dssp             CCSEECTTSEEEEEEEEESSCTTTS-CCEEEEEETTSC-CEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred             CCccccCCceEEEEEEEecccCCCc-cEEEEEeCCCCC-cEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence            345689999999999977665  56 99999963  21 10                011111111  234568999999


Q ss_pred             CCCCCeEEEEEEEeCCCC-------C--cccEEEEEEecccc--CCC----CCCCeEEEEcCCccCccceecCCcEEEEE
Q psy3823          78 SELEYGTLLCWARNEQGN-------Q--RTPCTFHVVKAGEC--EHP----VDKPSVQIKLGRNLNASVLNEGVDIYFDC  142 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~-------~--~~~~~l~V~~~~~~--~~~----~~~p~~~~~~~~~~~~~~~~~g~~v~l~C  142 (365)
                      +.+|+|.|+|.|.+..+.       .  .....|.|......  ..+    ..++.+...+    ....+.+|++++|.|
T Consensus        86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~v~~G~~v~L~C  161 (257)
T 1f3r_B           86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSP----SLLSASVGDRVTLSC  161 (257)
T ss_dssp             CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEET----SEECCCTTCCEEEEE
T ss_pred             CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccC----CEEEEcCCCCEEEEE
Confidence            999999999999987541       1  14457777311000  000    0011111212    234578999999999


Q ss_pred             EEEecCCCCeeEEEe--CCeEEee---C-------CCCceEE----eeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823         143 HIQANPPYKKLIWTH--NGITISN---N-------ASAGRII----TNQTLVLQSVTRHSGGLYACSAINSQ  198 (365)
Q Consensus       143 ~~~~~p~~~~i~W~~--~~~~l~~---~-------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~  198 (365)
                      .+.+.+.+. +.|++  +|..+..   .       ...+...    ...+|.|.+++.+|+|.|+|.+.|..
T Consensus       162 ~~~~~~~~~-v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          162 KGSQNINNY-LAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             ECSSCCBTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             EECCcCCCc-EEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            999887776 99999  5543311   0       0111211    13479999999999999999999864

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.74  E-value=1.6e-17  Score=137.71  Aligned_cols=165  Identities=12%  Similarity=0.142  Sum_probs=107.4

Q ss_pred             eecCCcEEEEEEEEecC---CCCeeEEEeCCeEEeeCC-------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         132 LNEGVDIYFDCHIQANP---PYKKLIWTHNGITISNNA-------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~~p---~~~~i~W~~~~~~l~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      +.+|++++|.|.+.+.+   .+..+.|++++..+....       ..+.......|.|.+++.+|+|.|+|.+.|..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            78999999999999874   344599999997764211       01112234579999999999999999999987753


Q ss_pred             C-cccEEE--EEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC-ceeEe
Q psy3823         202 G-STPFDL--NINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL-TSYSI  276 (365)
Q Consensus       202 ~-s~~~~l--~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~-~~~~~  276 (365)
                      . ...+.+  .+.          .+|.+........ ...|+.+.|.|.+.|. |++..+.|+++|........ .....
T Consensus        95 ~~~~~v~~~~~~~----------~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~  163 (207)
T 2vol_A           95 PIEKTISKTKGRP----------KAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMD  163 (207)
T ss_dssp             CEEEEECCCCCCC----------BCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEEC
T ss_pred             ceEEEeccCCCCC----------cCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceEC
Confidence            2 122222  222          5666543222211 2358999999999985 44324999999874321110 11123


Q ss_pred             eCCCE---EEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         277 QDGST---SVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       277 ~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .++..   +.|.|.....+|.|.|+|.|.|....
T Consensus       164 ~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          164 TDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             TTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             CCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            34433   34666666667899999999998654

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.74  E-value=2.9e-17  Score=138.22  Aligned_cols=172  Identities=13%  Similarity=0.147  Sum_probs=107.8

Q ss_pred             CceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc-CCC-----C------------CCceeEe--cCCeEEEEEEc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG-TAP-----R------------PLTSYSI--QDGSTSVARYT   75 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~-~l~-----~------------~~~~~~~--~~~~~~~l~i~   75 (365)
                      ++....+.+|++++|.|...+.+  .+ .+.|+|++.. .+.     .            ..+....  .......|.|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFTNY-WINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccccc-eEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence            34566789999999999976666  56 9999997521 010     0            0111111  12345589999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCC-cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCee
Q psy3823          76 PTSELEYGTLLCWARNEQGNQ-RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKL  153 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i  153 (365)
                      +++.+|+|.|.|.+.+..... .....|.|...     +..+|.+.+....    ..+.+|+.++|.|.+.+. |.+..+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~-----~~~~P~v~~~~~~----~~~~~g~~v~L~C~~~g~~P~p~~v  155 (227)
T 1mju_H           85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAA-----KTTAPSVYPLAPV----CGDTSGSSVTLGCLVKGYFPEPVTL  155 (227)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEECSS-----CCBCCEEEEECCC----C------CEEEEEEEEEEBSSCCEE
T ss_pred             CCCcccCEEEEEEECCCCceEEcCcEEEEEcCC-----CCCCCEEEEecCC----ccccCCCcEEEEEEeecEeCCCeEE
Confidence            999999999999998753211 13457887310     1235655543321    235689999999999985 666469


Q ss_pred             EEEeCCeEEeeCCCC-----ceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         154 IWTHNGITISNNASA-----GRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       154 ~W~~~~~~l~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .|++++..+......     +.......|.|.....+| |.|+|.|.|..+.
T Consensus       156 ~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  206 (227)
T 1mju_H          156 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  206 (227)
T ss_dssp             EEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGT
T ss_pred             EEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCC
Confidence            999988754211011     112234578888888878 9999999996653

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.74  E-value=1.8e-16  Score=135.85  Aligned_cols=173  Identities=14%  Similarity=0.262  Sum_probs=107.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCC--CCcceEEEEeCCCcC-CC------------CCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823          19 QRIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGT-AP------------RPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~-l~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +....+.+|++++|.|.+.+.  |.+ .+.|+|..... ..            ...+......+....|.|.+++.+|+|
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG   87 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSN-YVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEA   87 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTS-CCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCc-eEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCE
Confidence            345778999999999997665  677 99999953210 10            111112222334558999999999999


Q ss_pred             EEEEEEEeCCCCC---cccEEEEEEeccccCCC------------CCCCeEEEEcCCccCccceecCCcEEEEEEEEecC
Q psy3823          84 TLLCWARNEQGNQ---RTPCTFHVVKAGECEHP------------VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP  148 (365)
Q Consensus        84 ~Y~C~a~~~~~~~---~~~~~l~V~~~~~~~~~------------~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  148 (365)
                      .|+|.+.+..+..   .....|.|........+            ...+.+.. +    ....+.+|++++|.|.+.+.+
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~v~~G~~v~L~C~~~~~~  162 (256)
T 3ux9_B           88 DYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-S----GGGLVQPGGSLRLSCAASGFT  162 (256)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-E----CCEEECTTCCEEEEEEEESSC
T ss_pred             EEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-C----CCeEEcCCCeEEEEEEEeCCc
Confidence            9999999865422   25567777321100000            00112222 2    223578999999999999865


Q ss_pred             --CCCeeEEEeC--CeEEee------CC---------CCceEEe------eceEEEeeecCCCCeEEEEEEEcCC
Q psy3823         149 --PYKKLIWTHN--GITISN------NA---------SAGRIIT------NQTLVLQSVTRHSGGLYACSAINSQ  198 (365)
Q Consensus       149 --~~~~i~W~~~--~~~l~~------~~---------~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~  198 (365)
                        .+. +.|+++  +..+..      ..         ..+....      ..+|.|.+++.+|+|.|+|.+.|..
T Consensus       163 ~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          163 FSSYA-MSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             GGGSE-EEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ccccE-EEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence              444 999985  332210      00         0112111      2359999999999999999999863

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.74  E-value=1.6e-17  Score=138.59  Aligned_cols=173  Identities=11%  Similarity=0.184  Sum_probs=108.8

Q ss_pred             ceecCCcEEEEEEEEec-CCCCeeEEEeC---CeE--Ee-eCC----------CCceEE----eeceEEEeeecCCCCeE
Q psy3823         131 VLNEGVDIYFDCHIQAN-PPYKKLIWTHN---GIT--IS-NNA----------SAGRII----TNQTLVLQSVTRHSGGL  189 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~-p~~~~i~W~~~---~~~--l~-~~~----------~~~~~~----~~~~l~i~~~~~~d~G~  189 (365)
                      .+.+|++++|.|.+.+. +.+. +.|++.   ...  +. ...          ..+...    .+.+|.|.+++..|+|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   89 (218)
T 3s96_B           11 SFSLGASAKLTCTLNSQHSTYT-IEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEAI   89 (218)
T ss_dssp             EEETTSCEEEEEEECGGGTTCC-EEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EECCCCcEEEEEECCCCCCCcE-EEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCEE
Confidence            57899999999999987 7776 999982   111  10 000          012221    14579999999999999


Q ss_pred             EEEEEEcCCC----CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCCceeEEEeCCC
Q psy3823         190 YACSAINSQG----EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNS  264 (365)
Q Consensus       190 Y~C~~~~~~~----~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~  264 (365)
                      |.|.+.+..+    ......+.|.|...      ...+|.+........ ...|+.++|.|.+.+ .|.+..+.|+++|.
T Consensus        90 Y~C~~~~~~~~~~~~~~~~~~~l~V~~~------~~~~P~~~~~~~~~~-~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~  162 (218)
T 3s96_B           90 YICGVGDTIKEQFVYVFGGGTKVTVLGQ------PKSTPTLTVFPPSSE-ELKENKATLVCLISNFSPSGVTVAWKANGT  162 (218)
T ss_dssp             EEEEEEEEETTEEEEEECCCEEEEEESC------CCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             EEEEEecCCCCceeEEEcCcEEEEEecC------CCCCceEEeeCCCcc-cccCCcEEEEEEECcccCCCeEEEEEECCE
Confidence            9999998775    12234567777610      002344433222211 456789999999998 46662499999887


Q ss_pred             CCCCCCCcee-EeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         265 DTAPRPLTSY-SIQDGST---SVARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       265 ~~~~~~~~~~-~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                      .......... ...++..   +.|.|.....+|+|.|+|.|.|..+....+
T Consensus       163 ~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          163 PITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             EC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             ECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            5433211111 1113332   348888888888999999999998876544

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.74  E-value=3.2e-17  Score=136.42  Aligned_cols=167  Identities=17%  Similarity=0.278  Sum_probs=108.9

Q ss_pred             cceecCCcEEEEEEEEec------CCCCeeEEEeCCeE------EeeC---------CCCceEEe------eceEEEeee
Q psy3823         130 SVLNEGVDIYFDCHIQAN------PPYKKLIWTHNGIT------ISNN---------ASAGRIIT------NQTLVLQSV  182 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~------p~~~~i~W~~~~~~------l~~~---------~~~~~~~~------~~~l~i~~~  182 (365)
                      ..+.+|++|+|.|.+.+.      .+...+.|++++..      +...         ...+....      +.+|.|.++
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   89 (214)
T 2zg1_A           10 VTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDA   89 (214)
T ss_dssp             EEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             EEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccC
Confidence            357899999999998853      13344999997642      1100         01122221      347999999


Q ss_pred             cCCCCeEEEEEEEcCCCCC---CcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee----CCCc
Q psy3823         183 TRHSGGLYACSAINSQGEG---GSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN----PQAQ  255 (365)
Q Consensus       183 ~~~d~G~Y~C~~~~~~~~~---~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~  255 (365)
                      +..|+|.|.|.+.+..+..   .+..+.|.|..+       ...|.+..+ ..   +.+|+.++|.|.+.+.    |.|.
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-------~~~p~i~~~-~~---~~~G~~v~L~C~~~~~~~~~p~p~  158 (214)
T 2zg1_A           90 RMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL-------IEKPDIHFL-EP---LESGRPTRLSCSLPGSCEAGPPLT  158 (214)
T ss_dssp             CGGGCEEEEEEEEETTTEEEECCSSCEEEEEECC-------CCCCEEC---CC---CCTTCCEEEEEECTTCCSCSSCCE
T ss_pred             CHhhCceEEEEEEcCCCceeeecCCceEEEEecC-------CCCCceecC-cc---ccCCCeEEEEEEeccCCCCCCCce
Confidence            9999999999999875321   224677888711       124444321 11   6789999999999764    7787


Q ss_pred             eeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         256 YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       256 ~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                       +.|++++.....  ..     ....+.|.|..+..+|+|.|+|.|.|..+.......+.
T Consensus       159 -v~W~~~~~~~~~--~~-----~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          159 -FSWTGNALSPLD--PE-----TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             -EEEESSTTSSSC--SS-----CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             -EEEeCCCCccCC--CC-----ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence             999998764211  11     12345699999999999999999999876544333433

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.73  E-value=1.4e-16  Score=135.11  Aligned_cols=163  Identities=14%  Similarity=0.119  Sum_probs=109.1

Q ss_pred             cceecCCcEEEEEEEEecC----CCCeeEEEeC--CeE---EeeC-------CCCceEEe----eceEEEeeecCCCCeE
Q psy3823         130 SVLNEGVDIYFDCHIQANP----PYKKLIWTHN--GIT---ISNN-------ASAGRIIT----NQTLVLQSVTRHSGGL  189 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p----~~~~i~W~~~--~~~---l~~~-------~~~~~~~~----~~~l~i~~~~~~d~G~  189 (365)
                      ..+.+|++|+|.|.+.+.+    .+. +.|+++  +..   +...       ...+....    ..+|.|.+++..|+|.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~~~~-i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   89 (240)
T 1moe_A           11 LAVSLGQRATMSCRAGESVDIFGVGF-LHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT   89 (240)
T ss_dssp             EEECTTSCEEEEEEESSCCEETTEEC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEecCCCCEEEEEeCCCccccCCCce-EEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEE
Confidence            4678999999999999877    455 999984  221   1110       01122221    2379999999999999


Q ss_pred             EEEEEEcCCCCCCcccEEEEEeeeeecccccCCC-----CceecCccceeeeecCceEEEEEEEeeeCC--CceeEEEeC
Q psy3823         190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDE-----PVCKQSQQRIYGALRNEQVLVSCTVDANPQ--AQYFTWAFN  262 (365)
Q Consensus       190 Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~-----p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~~W~~~  262 (365)
                      |+|.+.|..+...+....|.|.          ..     |.+.........+.+|+.++|.|.+.+.|.  +. +.|+++
T Consensus        90 Y~C~~~n~~~~~~~~~~~l~V~----------~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~-v~W~k~  158 (240)
T 1moe_A           90 YYCQQTNEDPYTFGGGTKLEIK----------GGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTY-MHWVKQ  158 (240)
T ss_dssp             EEEEECSSSSCCBCCCEEEEEC----------CCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSC-EEEEEE
T ss_pred             EEEEEccCCceeecCCEEEEEe----------cCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCE-EEEEEE
Confidence            9999999876544456678877          32     222211122233889999999999998774  45 999996


Q ss_pred             CCCCCC------------------CCCceeEee--CCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         263 NSDTAP------------------RPLTSYSIQ--DGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       263 ~~~~~~------------------~~~~~~~~~--~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      +.....                  ...+.....  ......|.|.+++.+|+|.|+|.|.+.
T Consensus       159 ~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          159 RPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             CTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             CCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            321111                  011222221  245567999999999999999999853

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.73  E-value=1.7e-16  Score=132.77  Aligned_cols=173  Identities=13%  Similarity=0.146  Sum_probs=114.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-C---C--------------CCCceeEec--CCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-A---P--------------RPLTSYSIQ--DGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l---~--------------~~~~~~~~~--~~~~~~l~i~~   76 (365)
                      +....+.+|++++|.|...+.+  .+ .+.|||..... +   .              ...+.....  ......|.|.+
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKY-WMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCc-eEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence            3457789999999999976655  45 89999864210 0   0              011111111  23456899999


Q ss_pred             CCCCCCeEEEEEEEeCCCC---CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CC-CC
Q psy3823          77 TSELEYGTLLCWARNEQGN---QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PP-YK  151 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~~~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~  151 (365)
                      ++.+|+|.|.|.+.+..+.   ......|.|...     +..+|.+.+.+ .    ..+.+|+.++|.|.+.+. |. +.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~-----~~~~P~v~~~~-~----~~~~~g~~v~L~C~~~g~~P~~~~  155 (220)
T 2fbj_H           86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAE-----SARNPTIYPLT-L----PPALSSDPVIIGCLIHDYFPSGTM  155 (220)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSS-----CCBCCEEEEEC-C----CSSSCCSSEEEEEEEEEEBSCCCE
T ss_pred             CChhhCEEEEEEEeccccccceecCCEEEEecCC-----CCCCCEEEEee-c----ccccCCCcEEEEEEEEeEECCCcE
Confidence            9999999999999986542   124467887311     12356665543 1    235789999999999986 55 34


Q ss_pred             eeEEEeCCeEEeeCCC------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC
Q psy3823         152 KLIWTHNGITISNNAS------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG  202 (365)
Q Consensus       152 ~i~W~~~~~~l~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  202 (365)
                      .+.|++++..+.....      .+.......|.|......|+|.|+|.+.|..+...
T Consensus       156 ~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          156 NVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            5999999876521111      11111234688888888999999999999987644

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.73  E-value=8.6e-19  Score=145.83  Aligned_cols=173  Identities=14%  Similarity=0.163  Sum_probs=110.8

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeC--CeEEee----------CCCCceEEe----eceEEEeeecCCCCeEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHN--GITISN----------NASAGRIIT----NQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~--~~~l~~----------~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+.+|++++|.|.+.+.+.+. +.|+++  +..+..          ....+....    ..+|.|.+++..|+|.|+|.
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~-v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   87 (212)
T 1nfd_E            9 ASVTVGETVKITCSGDQLPKNF-AYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL   87 (212)
T ss_dssp             EEEETTSCCCEEEEETTGGGSC-CEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred             EEEeCCCcEEEEEecCCCCCCe-EEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEE
Confidence            3578999999999988777666 999984  333210          001122211    34899999999999999999


Q ss_pred             EEcCCCC--CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CC-CceeEEEeCCCCCCCC
Q psy3823         194 AINSQGE--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQ-AQYFTWAFNNSDTAPR  269 (365)
Q Consensus       194 ~~~~~~~--~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~~W~~~~~~~~~~  269 (365)
                      +.|..+.  .......|.|...      ...+|.+........ +..|+.++|.|.+.+. |+ +. +.|+++|......
T Consensus        88 ~~n~~~~~~~~~~~~~l~V~~~------~~~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~-v~W~k~g~~~~~~  159 (212)
T 1nfd_E           88 SSYGDNNDLVFGSGTQLTVLRG------PKSSPKVTVFPPSPE-ELRTNKATLVCLVNDFYPGSAT-VTWKANGATINDG  159 (212)
T ss_dssp             EEETTTTEEEECCCEEEEEECC------CCBCCEEECCCCCHH-HHHTTEECCCEEEEEEBSSCCE-EEEEETTEEECSS
T ss_pred             EEcccCcccccCCceEEEEccC------CCCCCEEEeeCCchH-hccCCceEEEEEEEeeECCccE-EEEEECCeEcCCC
Confidence            9973221  1123355666410      003454443222212 4579999999999987 44 56 9999998644322


Q ss_pred             CCceeE--eeCC--CEEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         270 PLTSYS--IQDG--STSVARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       270 ~~~~~~--~~~~--~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                      ......  ..++  ..+.|.|.++..+|+|.|+|.|.|..+..+.+
T Consensus       160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  205 (212)
T 1nfd_E          160 VKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKS  205 (212)
T ss_dssp             CBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCCC
T ss_pred             eecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEEE
Confidence            111111  1111  12458899999999999999999998876544

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.73  E-value=4.4e-17  Score=136.32  Aligned_cols=171  Identities=12%  Similarity=0.148  Sum_probs=112.6

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC----C-C-----C----------CCceeEe--cCCeEEEEEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT----A-P-----R----------PLTSYSI--QDGSTSVARY   74 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~----l-~-----~----------~~~~~~~--~~~~~~~l~i   74 (365)
                      +....+.+|++++|.|...+.|  .+ .+.|+|++...    + .     .          ..+....  .......|.|
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNY-WMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGS-EEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCc-cEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            4456789999999999976655  56 99999964210    0 0     0          0111111  1223458999


Q ss_pred             ccCCCCCCeEEEEEEEeCCCCC-c--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCC
Q psy3823          75 TPTSELEYGTLLCWARNEQGNQ-R--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPY  150 (365)
Q Consensus        75 ~~~~~~d~G~Y~C~a~~~~~~~-~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~  150 (365)
                      .+++.+|+|.|.|.+.+..+.. .  ....|.|..     .+..+|.+...+..    ..+.+|+.++|.|.+.+. |.+
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~-----~~~~~P~i~~~~~~----~~~~~g~~v~L~C~~~g~~P~p  156 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSS-----ATTTAPSVYPLVPG----CSDTSGSSVTLGCLVKGYFPEP  156 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS-----SCCBCCEEEEECCC----SCCSCSSSEEEEEEEEEEBSSC
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEcc-----CCCCCCeEEEcccc----cccCCCCcEEEEEEEEEEeCCC
Confidence            9999999999999999865321 1  456777721     01235665554322    235789999999999987 777


Q ss_pred             CeeEEEeCCeEE--eeCCC---CceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         151 KKLIWTHNGITI--SNNAS---AGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       151 ~~i~W~~~~~~l--~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      ..+.|++++...  .....   .+.....+.|.|.+...++ |.|+|.|.|..+.
T Consensus       157 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  210 (220)
T 1pz5_B          157 VTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASK  210 (220)
T ss_dssp             CEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGT
T ss_pred             eEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCcc
Confidence            359999987631  00000   0222335678898888867 9999999999874

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.73  E-value=8.9e-18  Score=139.54  Aligned_cols=171  Identities=12%  Similarity=0.134  Sum_probs=111.5

Q ss_pred             ceecCCcEEEEEEEEecCCCCeeEEEeC--CeEEe---eC-------CCCceEE----eeceEEEeeecCCCCeEEEEEE
Q psy3823         131 VLNEGVDIYFDCHIQANPPYKKLIWTHN--GITIS---NN-------ASAGRII----TNQTLVLQSVTRHSGGLYACSA  194 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~--~~~l~---~~-------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~  194 (365)
                      .+.+|++++|.|.+.  +.+. +.|+++  +..+.   ..       ...+...    .+.+|.|.+++..|+|.|.|.+
T Consensus        11 ~v~~G~~v~L~C~~~--~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   87 (211)
T 3tv3_L           11 SGSPGQSITISCTGT--SNNF-VSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGS   87 (211)
T ss_dssp             EECTTCEEEEEEECC--CSSC-EEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEE
T ss_pred             EEcCCCCEEEEEEEC--CCCe-EEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEEE
Confidence            577999999999987  5555 999983  22211   00       0111221    1457999999999999999999


Q ss_pred             EcCCC-CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC--CceeEEEeCCCCCCCCCC
Q psy3823         195 INSQG-EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ--AQYFTWAFNNSDTAPRPL  271 (365)
Q Consensus       195 ~~~~~-~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~~W~~~~~~~~~~~~  271 (365)
                      .+..+ ......+.|.|...      ...+|.+........ +..|+.++|.|.+.+.++  +. +.|+++|........
T Consensus        88 ~~~~~~~~~~~~~~l~V~~~------~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~-v~W~k~g~~l~~~~~  159 (211)
T 3tv3_L           88 LVGNWDVIFGGGTKLTVLGQ------PKAAPSVTLFPPSSE-ELQANKATLVCLISDFYPGAVT-VAWKADSSPVKAGVE  159 (211)
T ss_dssp             EETTTEEEECCCEEEEECCS------CCBCCEEEEECCCHH-HHHTTCEEEEEEEEEEBSSCCE-EEEEETTEEECTTEE
T ss_pred             ecCCCceeECCCceEEEeCC------CCcCCeeEecCCchh-hhcCCCeEEEEEeeeecCCCeE-EEEEECCeecCCCcc
Confidence            99877 23335566777610      002444443222222 347999999999998643  55 999998864432111


Q ss_pred             ce--eEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         272 TS--YSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       272 ~~--~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      ..  ....++.   .+.|.|.++..+|+|.|+|.|.|..+....++
T Consensus       160 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          160 TTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             ECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             cCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            11  1112222   25689999988999999999999987765543

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.73  E-value=1.3e-16  Score=136.75  Aligned_cols=175  Identities=13%  Similarity=0.216  Sum_probs=110.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CC-------------CCCceeE--ecCCeEEEEEEccCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-AP-------------RPLTSYS--IQDGSTSVARYTPTSELE   81 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~-------------~~~~~~~--~~~~~~~~l~i~~~~~~d   81 (365)
                      .+..+.+.+|++++|.|...+.|.+ .+.|+|..... ..             ...+...  .......+|.|.+++.+|
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   87 (256)
T 3tf7_C            9 PDARVTVSEGASLQLRCKYSYSATP-YLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSD   87 (256)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGG
T ss_pred             cCceEEecCCCeEEEEEEeCCCCCc-eEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCccc
Confidence            4567788999999999997777888 99999843210 00             0011111  233445689999999999


Q ss_pred             CeEEEEEEEeCCCCCc----ccEEEEEEeccc-----------cCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe
Q psy3823          82 YGTLLCWARNEQGNQR----TPCTFHVVKAGE-----------CEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA  146 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~~~----~~~~l~V~~~~~-----------~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  146 (365)
                      +|.|.|.+.+..+...    ....|.|...+.           ......+|.+...+    ....+.+|++++|.|.+.+
T Consensus        88 sG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p----~~~~v~~G~~v~L~C~~~~  163 (256)
T 3tf7_C           88 SAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSP----RNKVTVTGENVTLSCRQTN  163 (256)
T ss_dssp             CSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESC----SEEEEETTCCEEECEEECS
T ss_pred             CEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecC----CEEEEeCCCcEEEEEEcCC
Confidence            9999999998765322    456777742100           00001234443332    2345779999999999987


Q ss_pred             cCCCCeeEEEeC--CeEE---ee--CC--------CCceEE-----eeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         147 NPPYKKLIWTHN--GITI---SN--NA--------SAGRII-----TNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       147 ~p~~~~i~W~~~--~~~l---~~--~~--------~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      . .+. +.|++.  +..+   ..  ..        ..+...     ...+|.|.+++.+|+|.|+|.+.|..|
T Consensus       164 ~-~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          164 S-HNY-MYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG  234 (256)
T ss_dssp             C-CSE-EEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred             C-ceE-EEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence            5 444 999983  2111   10  00        011111     134799999999999999999998765

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.73  E-value=1e-16  Score=138.35  Aligned_cols=176  Identities=13%  Similarity=0.145  Sum_probs=114.0

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CC------------CC----CceeEe-cCCeEEEEEEccCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-AP------------RP----LTSYSI-QDGSTSVARYTPTSE   79 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~------------~~----~~~~~~-~~~~~~~l~i~~~~~   79 (365)
                      .+..+.+.+|++++|.|... .+.+ .+.|+|..... ..            ..    .+.... .......|.|.+++.
T Consensus        32 ~p~~v~v~~G~~v~L~C~~~-~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~  109 (268)
T 3pl6_D           32 TPSNKVTEKGKYVELRCDPI-SGHT-ALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTER  109 (268)
T ss_dssp             CCSEEEEETTCCEEEEEBCB-TTCC-EEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCG
T ss_pred             CCCEEEecCCCCEEEEEEeC-CCCc-eEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCc
Confidence            34567889999999999965 5677 99999932110 10            00    111111 223345899999999


Q ss_pred             CCCeEEEEEEEeCCC--CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC-CeeEEE
Q psy3823          80 LEYGTLLCWARNEQG--NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY-KKLIWT  156 (365)
Q Consensus        80 ~d~G~Y~C~a~~~~~--~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~i~W~  156 (365)
                      +|+|.|+|.+.+...  .......|.|.....   ...+|.+.+...   ....+.+|+.++|.|.+.+.+++ ..+.|+
T Consensus       110 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~---~~~~P~v~~~~~---~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  183 (268)
T 3pl6_D          110 GDSAVYLCATSALGDTQYFGPGTRLTVLEDLK---NVFPPEVAVFEP---SEAEISHTQKATLVCLATGFYPDHVELSWW  183 (268)
T ss_dssp             GGCEEEEEEEESSSSSCEECCCEEEEEESCGG---GCBCCEEEEECC---CHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             ccCEEEEEEEecCCCceeeCCcEEEEEecCcc---cccCCceEEeCC---CcccccCCCceEEEEEECcccCCCeEEEEE
Confidence            999999999997422  222556777732100   022666555432   22345679999999999986554 359999


Q ss_pred             eCCeEEeeCC-------------CCceEEeeceEEEeeecCCC-CeEEEEEEEcCCCCC
Q psy3823         157 HNGITISNNA-------------SAGRIITNQTLVLQSVTRHS-GGLYACSAINSQGEG  201 (365)
Q Consensus       157 ~~~~~l~~~~-------------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~  201 (365)
                      ++|..+....             ..+.......|.+.....+| +|.|+|.+.|.....
T Consensus       184 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          184 VNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             ESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             ECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence            9999885321             11122223567788777777 999999999886543

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.73  E-value=2.4e-16  Score=134.24  Aligned_cols=174  Identities=12%  Similarity=0.237  Sum_probs=108.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC-----CcceEEEEeCCCcC-CC------------CCCceeEecCCeEEEEEEccCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP-----QAQYFTWAFNNSGT-AP------------RPLTSYSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p-----~~~~v~W~~~~~~~-l~------------~~~~~~~~~~~~~~~l~i~~~~~~   80 (365)
                      +..+.+.+|++++|.|.+.+.|     .+ .+.|+|+.... +.            ...+...........|.|.+++.+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   86 (247)
T 1svz_A            8 PLYLPVSLGDQASISCRSSQTIVHNNGNT-YLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   86 (247)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCB-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCeEEecCCCCEEEEEeCCCcccccCCCc-eEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHH
Confidence            4567789999999999987777     56 99999954210 10            011112222334458999999999


Q ss_pred             CCeEEEEEEEeCCCCC-cccEEEEEEecccc---CCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecC--CCCeeE
Q psy3823          81 EYGTLLCWARNEQGNQ-RTPCTFHVVKAGEC---EHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP--PYKKLI  154 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~-~~~~~l~V~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~~i~  154 (365)
                      |+|.|.|.+.+..+.. .....|.|......   ......|.+.+...   ....+.+|++++|.|.+.+.+  .+. +.
T Consensus        87 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~G~~v~L~C~~~~~~~~~~~-v~  162 (247)
T 1svz_A           87 DLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQS---GPELKKPGETVKISCKATNYAFTDYS-MH  162 (247)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEC---CCEEECTTCCEEEEEEEESSCGGGSC-EE
T ss_pred             HCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCC---CceeecCCCcEEEEEEEcCcccCCcE-EE
Confidence            9999999998865432 24467777311000   00000022222222   123588999999999999875  344 99


Q ss_pred             EEeCC--eEEe----eC-----------CCCceEEe------eceEEEeeecCCCCeEEEEEEEcC
Q psy3823         155 WTHNG--ITIS----NN-----------ASAGRIIT------NQTLVLQSVTRHSGGLYACSAINS  197 (365)
Q Consensus       155 W~~~~--~~l~----~~-----------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~  197 (365)
                      |++++  ..+.    ..           ...+....      ..+|.|.+++.+|+|.|.|.+.|.
T Consensus       163 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          163 WVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            99852  2111    00           01122221      248999999999999999999985

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.73  E-value=8.1e-18  Score=142.04  Aligned_cols=170  Identities=11%  Similarity=0.113  Sum_probs=92.2

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCC--eEE---ee---------CCCCc--eEEeeceEEEeeecCCCCeEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNG--ITI---SN---------NASAG--RIITNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~--~~l---~~---------~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+.+|++++|.|.+.+.+.+. +.|++++  ..+   ..         .....  ....+.+|.|.+++.+|+|.|.|.
T Consensus        33 ~~v~~G~~v~L~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  111 (233)
T 3bqu_C           33 LSMSIGEKVTIRCITSTDIDDD-MNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCL  111 (233)
T ss_dssp             C-------CCEEEEEEEEESSC-EEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEEE
T ss_pred             EEEecCCCEEEEEecCCcCCCe-EEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEEE
Confidence            4678999999999999877666 9999842  211   00         00111  111234799999999999999999


Q ss_pred             EEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeCCCCCCCC-CC
Q psy3823         194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSDTAPR-PL  271 (365)
Q Consensus       194 ~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~-~~  271 (365)
                      +.+..+........|.|...       ..+|.+........ ...|+.++|.|.+.+.+++ ..+.|+++|...... ..
T Consensus       112 ~~~~~~~~~~~~~~l~V~~~-------~~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  183 (233)
T 3bqu_C          112 QSDNLPYTFGGGTNLEIKRA-------DAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  183 (233)
T ss_dssp             ECSSSSCCBCCCCBC---CC-------CBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEE
T ss_pred             EecCCceeecCCEEEEEeCC-------CCCCEEEEeCCCHH-hhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceE
Confidence            99876543333334555510       02555543222211 3469999999999986544 249999988744322 01


Q ss_pred             ceeE--eeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         272 TSYS--IQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       272 ~~~~--~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ....  ..++.   .+.|.|..+..+|+|.|+|.|.|.....
T Consensus       184 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  225 (233)
T 3bqu_C          184 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  225 (233)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---C
T ss_pred             ecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCCc
Confidence            0111  12222   3568899998999999999999986553

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.73  E-value=4.4e-16  Score=132.26  Aligned_cols=162  Identities=12%  Similarity=0.063  Sum_probs=106.8

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCC--e---EEeeC-------CCCceEEe----eceEEEeeecCCCCeEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNG--I---TISNN-------ASAGRIIT----NQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~--~---~l~~~-------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+.+|++++|.|.+.+.+.+. +.|+++.  .   .+...       ...+....    ..+|.|.+++.+|+|.|.|.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (242)
T 2znx_A           11 LSVTPGNSVSLSCRASQSIGNN-LHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (242)
T ss_dssp             EEECTTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEcCCCcEEEEEEeCCCCCce-EEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEe
Confidence            4678999999999999887666 9999842  1   11100       01122221    34799999999999999999


Q ss_pred             EEcCCCCCCcccEEEEEeeeeecccccCCCCc-------------eecCccceeeeecCceEEEEEEEeeeC--CCceeE
Q psy3823         194 AINSQGEGGSTPFDLNINKMVNLIFNSIDEPV-------------CKQSQQRIYGALRNEQVLVSCTVDANP--QAQYFT  258 (365)
Q Consensus       194 ~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~~  258 (365)
                      +.+..+...+....|.|.          .+|.             ....+... .+.+|+.++|.|.+.+.|  .+. +.
T Consensus        90 ~~n~~~~~~~~~~~L~V~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~~g~~~~~~~-v~  157 (242)
T 2znx_A           90 QSNSXPYTFGGGTKLEIT----------GGGGSGGGGSGGGGSDIQLQESGPS-LVKPSQTLSLTCSVTGDSITSDY-XS  157 (242)
T ss_dssp             ECSSSSCEECCCEEEEEC-------------------------CCEEEEECCS-EECTTSCEEEEEEEESSCGGGSC-EE
T ss_pred             EecCCceEECCCEEEEEc----------CCCCCCcccccccccceeeecCCcc-eecCCCeEEEEEEEEccccCCcc-ee
Confidence            998755333345667776          3331             11111222 388999999999999875  466 99


Q ss_pred             EEeCCCCCCC-----------------CCCceeEe--eCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         259 WAFNNSDTAP-----------------RPLTSYSI--QDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       259 W~~~~~~~~~-----------------~~~~~~~~--~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      |++++.....                 ...+....  ..+....|.|.+++.+|+|.|.|.|.|.
T Consensus       158 W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          158 XIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            9985321111                 01122222  1344567999999999999999999984

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.73  E-value=9.6e-17  Score=137.60  Aligned_cols=189  Identities=12%  Similarity=0.148  Sum_probs=114.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCC--CCcceEEEEeCCCc----CC-------------CCCCceeEe--cCCeEEEEEEcc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSG----TA-------------PRPLTSYSI--QDGSTSVARYTP   76 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~----~l-------------~~~~~~~~~--~~~~~~~l~i~~   76 (365)
                      ++....+.+|++++|.|.+.+.  +.+ .+.|+|....    .+             ....+....  ......+|.|.+
T Consensus        14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   92 (257)
T 3gkz_A           14 ESGPSLVKPSQTLSLTCSVTGDSVTSG-YWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS   92 (257)
T ss_dssp             EECCSEECTTCCEEEEEEEEESCCSSC-EEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCeEEcCCCcEEEEEEEEcccccce-EEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence            3445568999999999996553  466 9999994321    00             000111111  223455899999


Q ss_pred             CCCCCCeEEEEEEEeCCCCC----cccEEEEEEeccc-----cCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec
Q psy3823          77 TSELEYGTLLCWARNEQGNQ----RTPCTFHVVKAGE-----CEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN  147 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~~~~----~~~~~l~V~~~~~-----~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  147 (365)
                      ++.+|+|.|+|.+.+..+..    .....|.|.....     ......+|.+...+    ....+.+|++++|.|.+.+.
T Consensus        93 v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p----~~~~v~~G~~v~L~C~~~~~  168 (257)
T 3gkz_A           93 VSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSP----AIMSASPGEKVTLTCSASSS  168 (257)
T ss_dssp             CCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSC----SEEEECTTCCEEEEEEESSC
T ss_pred             CChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCC----ceEEEeCCCcEEEEEEEccC
Confidence            99999999999999863222    2456777732100     00000123332222    23467899999999999987


Q ss_pred             CCCCeeEEEeC--CeEEe---eCC-------CCceEEe----eceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         148 PPYKKLIWTHN--GITIS---NNA-------SAGRIIT----NQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       148 p~~~~i~W~~~--~~~l~---~~~-------~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      +.+..+.|+++  +..+.   ...       ..+....    ..+|.|.+++.+|+|.|.|.+.+........-..|.|.
T Consensus       169 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~  248 (257)
T 3gkz_A          169 VSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIK  248 (257)
T ss_dssp             CCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEE
Confidence            77634999983  32221   000       0111111    34699999999999999999987654433344556665

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.73  E-value=1.6e-16  Score=134.72  Aligned_cols=174  Identities=13%  Similarity=0.143  Sum_probs=112.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------------C---CCCce-eEecCCeEEEEEEccCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------------P---RPLTS-YSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------------~---~~~~~-~~~~~~~~~~l~i~~~~~~d   81 (365)
                      +..+.+.+|+.++|.|...+ +.+ .+.|+|..... .            .   ...+. ..........|.|.+++.+|
T Consensus         9 p~~v~v~~G~~v~L~C~~~~-~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   86 (240)
T 3q5y_A            9 PRHIIKEKGGRSVLTCIPIS-GHS-NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   86 (240)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCC-EEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred             cceeeecCCCcEEEEEEeCC-CCc-eEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhH
Confidence            45677899999999999754 777 99999932210 0            0   00111 11122345589999999999


Q ss_pred             CeEEEEEEEeCCCC---CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEe
Q psy3823          82 YGTLLCWARNEQGN---QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTH  157 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~  157 (365)
                      +|.|+|.+.+....   ......|.|.....   ...+|.+.+....   ...+.+|+.++|.|.+.+ .|.+..+.|++
T Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~---~~~~p~~~~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  160 (240)
T 3q5y_A           87 SAMYFCASSLRWGDEQYFGPGTRLTVLEDLR---NVTPPKVSLFEPS---KAEIANKQKATLVCLARGFFPDHVELSWWV  160 (240)
T ss_dssp             CEEEEEEEESSTTBCCEECCCEEEEEESCGG---GCBCCEEEEECCC---HHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CEEEEEEEccCCCcceEEcCCEEEEEecccc---CCCCCeeEEeCCc---hhhcccCCceEEEEEEeeEECCCeEEEEEE
Confidence            99999999843221   12556677732100   0246666554332   234567999999999998 55554589999


Q ss_pred             CCeEEeeCCCC---------ceEEeeceEEEeeecCCC-CeEEEEEEEcCCCC
Q psy3823         158 NGITISNNASA---------GRIITNQTLVLQSVTRHS-GGLYACSAINSQGE  200 (365)
Q Consensus       158 ~~~~l~~~~~~---------~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  200 (365)
                      +|..+......         +.......|.|.....+| .|.|+|.+.|....
T Consensus       161 ~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          161 NGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             TTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            99988532111         111113458888888888 77999999987653

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.73  E-value=3.6e-16  Score=134.64  Aligned_cols=175  Identities=13%  Similarity=0.213  Sum_probs=109.6

Q ss_pred             CceEEEEecCCcEEEEEEeCCCC------CcceEEEEeCC--CcCCC------------CCCceeEecCCeEEEEEEccC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANP------QAQYFTWAFNN--SGTAP------------RPLTSYSIQDGSTSVARYTPT   77 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p------~~~~v~W~~~~--~~~l~------------~~~~~~~~~~~~~~~l~i~~~   77 (365)
                      .+..+.+.+|+.++|.|...+.|      .+ .+.|+|..  .. +.            ...+...........|.|.++
T Consensus        11 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~-~v~W~k~~~g~~-~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v   88 (264)
T 2gjj_A           11 TPSSLPVSVGEKVTMTCKSSQTLLYSNNQKN-YLAWYQQKPGQS-PKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSV   88 (264)
T ss_dssp             ECSEEEEETTCCEEEEEEESSCCEETTTTEE-CEEEEEECTTSC-CEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             cCCeEEecCCCcEEEEeEcCCcccccccCCc-eEEEEEECCCCC-cEEEEEecccCCCCCCccEEEecCCCEEEEEECCC
Confidence            35567889999999999987777      56 99999963  21 10            011112222334558999999


Q ss_pred             CCCCCeEEEEEEEeCCCCC-cccEEEEEEecccc---------CCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec
Q psy3823          78 SELEYGTLLCWARNEQGNQ-RTPCTFHVVKAGEC---------EHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN  147 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~~-~~~~~l~V~~~~~~---------~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  147 (365)
                      +.+|+|.|.|.+.+..+.. ...+.|.|......         .....+|.+.+...   ....+.+|++++|.|.+.+.
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~G~~v~L~C~~~~~  165 (264)
T 2gjj_A           89 KAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQS---GPEVVKTGASVKISCKASGY  165 (264)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEEC---CCEEECTTCCEEEEEEEESS
T ss_pred             CHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCC---CCEEEcCCCcEEEEEEEeCC
Confidence            9999999999998765422 24467777321000         00000122333222   12357899999999999987


Q ss_pred             CC-CCeeEEEeC--CeE---Eee--CC----------CCceEEe------eceEEEeeecCCCCeEEEEEEEcC
Q psy3823         148 PP-YKKLIWTHN--GIT---ISN--NA----------SAGRIIT------NQTLVLQSVTRHSGGLYACSAINS  197 (365)
Q Consensus       148 p~-~~~i~W~~~--~~~---l~~--~~----------~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~  197 (365)
                      +. ...+.|+++  +..   +..  ..          ..+....      ..+|.|.+++.+|+|.|.|.+.|.
T Consensus       166 ~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          166 SFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             CGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            64 234999985  221   210  00          1112111      458999999999999999999985

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.73  E-value=2.6e-16  Score=131.95  Aligned_cols=173  Identities=13%  Similarity=0.114  Sum_probs=112.5

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-CC------C-----------CCceeEe--cCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-AP------R-----------PLTSYSI--QDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l~------~-----------~~~~~~~--~~~~~~~l~i~~~   77 (365)
                      ....+.+|+.++|.|...+.+  .+ .+.|+|..... ..      .           ..+....  .......|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGY-GMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCc-eEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            456789999999999966555  35 89999864210 10      0           0111111  1223458999999


Q ss_pred             CCCCCeEEEEEEEeCCC---C---CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCC
Q psy3823          78 SELEYGTLLCWARNEQG---N---QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPY  150 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~---~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~  150 (365)
                      +.+|+|.|.|.+.+..+   .   ....+.|.|..     .+..+|.+......    ..+.+|+.++|.|.+.+. |.+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~-----~~~~~P~i~~~~~~----~~~~~g~~v~L~C~~~g~~P~p  157 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSS-----GSASAPTLFPLVSC----ENSNPSSTVAVGCLAQDFLPDS  157 (223)
T ss_dssp             CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECS-----SCCBCCEEEEEECT----TCCCSSSEEEEEEEEEEEBSSC
T ss_pred             CHHHCEEEEEEEeccccCcccceeecCcEEEEEcc-----CCCCCCEEEEecCC----cccCCCCcEEEEEEEEEEeCCC
Confidence            99999999999988653   1   11345788831     01235665543211    235689999999999986 666


Q ss_pred             CeeEEEe-CCeEEeeC---CC---CceEEeeceEEEeeecC--CCCeEEEEEEEcCCCCCC
Q psy3823         151 KKLIWTH-NGITISNN---AS---AGRIITNQTLVLQSVTR--HSGGLYACSAINSQGEGG  202 (365)
Q Consensus       151 ~~i~W~~-~~~~l~~~---~~---~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~~  202 (365)
                      ..+.|++ +|..+...   ..   .+.......|.|.....  +|.|.|+|.+.|..+...
T Consensus       158 ~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~  218 (223)
T 1dee_B          158 ITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKE  218 (223)
T ss_dssp             CEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEE
T ss_pred             eEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCc
Confidence            4699999 88876420   00   11122245678877766  789999999999887543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.72  E-value=9.2e-17  Score=136.65  Aligned_cols=174  Identities=14%  Similarity=0.115  Sum_probs=112.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCC--------------CcCCCCC---CceeE-ecCCeEEEEEEccCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNN--------------SGTAPRP---LTSYS-IQDGSTSVARYTPTSEL   80 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~--------------~~~l~~~---~~~~~-~~~~~~~~l~i~~~~~~   80 (365)
                      +..+.+.+|+.++|.| ..+.+.+ .+.|+|..              .......   .+... ........|.|.+++.+
T Consensus         9 p~~v~v~~G~~v~L~C-~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~   86 (245)
T 4ei6_B            9 PSHQIIDMGQMVTLNC-DPVSNHL-YFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALE   86 (245)
T ss_dssp             CSEEEEETTCCEEEEE-ECCTTCC-EEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGG
T ss_pred             CceEEecCCCCEEEEE-EcCCCCC-EEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHh
Confidence            4557789999999999 5567888 99999921              1100000   11111 12234458999999999


Q ss_pred             CCeEEEEEEEeCCC----CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEE
Q psy3823          81 EYGTLLCWARNEQG----NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIW  155 (365)
Q Consensus        81 d~G~Y~C~a~~~~~----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W  155 (365)
                      |+|.|+|.+.+...    .......|.|.....   ...+|.+.+....   ...+.+|+.++|.|.+.+. |.+..+.|
T Consensus        87 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~---~~~~p~~~~~~~~---~~~~~~g~~v~l~C~~~g~~p~~~~v~W  160 (245)
T 4ei6_B           87 DSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLK---NVFPPEVAVFEPS---EAEISHTQKATLVCLATGFYPDHVELSW  160 (245)
T ss_dssp             GCEEEEEEEECSSTTCCCEECCCEEEEEESCGG---GCBCCEEEEECCC---HHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             HCEEEEEEEccCCCcceEEEcCCcEEEEecccC---CCCCceEEEeCCC---cccccCCCceEEEEEEeeEeCCCeEEEE
Confidence            99999999986432    122556777732100   0146665554322   2345679999999999984 44435999


Q ss_pred             EeCCeEEeeCCC-------------CceEEeeceEEEeeecCCC-CeEEEEEEEcCCCC
Q psy3823         156 THNGITISNNAS-------------AGRIITNQTLVLQSVTRHS-GGLYACSAINSQGE  200 (365)
Q Consensus       156 ~~~~~~l~~~~~-------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~  200 (365)
                      +++|..+.....             .+.......|.|.....+| +|.|+|.+.|....
T Consensus       161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            999998863211             1112223458888887778 99999999987543

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.72  E-value=5.3e-17  Score=138.84  Aligned_cols=178  Identities=13%  Similarity=0.126  Sum_probs=113.1

Q ss_pred             cceecCCcEEEEEEEEecC-----CCCeeEEEeCC--eE---Eee-------CCCCceEEe----eceEEEeeecCCCCe
Q psy3823         130 SVLNEGVDIYFDCHIQANP-----PYKKLIWTHNG--IT---ISN-------NASAGRIIT----NQTLVLQSVTRHSGG  188 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p-----~~~~i~W~~~~--~~---l~~-------~~~~~~~~~----~~~l~i~~~~~~d~G  188 (365)
                      ..+.+|++|+|.|.+.+.+     .+. +.|++++  ..   +..       ....+....    +.+|.|.+++.+|+|
T Consensus        44 ~~v~~G~~v~L~C~~~~~~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  122 (252)
T 3bkj_L           44 LPVNLGEQASISCRSSQSIVHSNGHTY-LEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLG  122 (252)
T ss_dssp             EEECTTSCEEEEEEESSCCBCTTSCBC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEEeCCCcEEEEEEcCCCccccCCCCc-EEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCE
Confidence            4578999999999998876     344 9999853  11   110       001122211    238999999999999


Q ss_pred             EEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeC-CCceeEEEeCCCCCC
Q psy3823         189 LYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP-QAQYFTWAFNNSDTA  267 (365)
Q Consensus       189 ~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~W~~~~~~~~  267 (365)
                      .|.|.+.+..+........|.|...       ..+|.+........ +..|+.++|.|.+.+.+ ++..+.|+++|....
T Consensus       123 ~Y~C~~~~~~~~~~~~~~~l~V~~~-------~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~  194 (252)
T 3bkj_L          123 VYYCFQASLVPLTFGAGTKLELKRA-------DAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  194 (252)
T ss_dssp             EEEEEECSBSSCEECCCEEEEECCC-------CBCCEEEEECCCHH-HHHHTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             EEEEEEEcCCccEECCCEEEEEeCC-------CcCcEEEEeCCChh-hcCCCcEEEEEEEeeEeCCCcEEEEEECCeecC
Confidence            9999999876543333456776510       12455543222211 34789999999999854 432499999886432


Q ss_pred             CC-CCceeE--eeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEc
Q psy3823         268 PR-PLTSYS--IQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       268 ~~-~~~~~~--~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  318 (365)
                      .. ......  ..++.   .+.|.|.++..+|+|.|+|.|.|.....  ++...+.+
T Consensus       195 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~--p~~~~~~~  249 (252)
T 3bkj_L          195 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS--PIVKSFNR  249 (252)
T ss_dssp             SSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS--CEEEEEET
T ss_pred             CCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC--CeeEeecc
Confidence            22 000111  12222   3569999999999999999999986654  44444443

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.72  E-value=3.9e-16  Score=133.71  Aligned_cols=176  Identities=14%  Similarity=0.182  Sum_probs=109.7

Q ss_pred             CccceecCCcEEEEEEEEec--CCCCeeEEEeC--CeE---Ee-eC-----------CCCceEEe------eceEEEeee
Q psy3823         128 NASVLNEGVDIYFDCHIQAN--PPYKKLIWTHN--GIT---IS-NN-----------ASAGRIIT------NQTLVLQSV  182 (365)
Q Consensus       128 ~~~~~~~g~~v~l~C~~~~~--p~~~~i~W~~~--~~~---l~-~~-----------~~~~~~~~------~~~l~i~~~  182 (365)
                      ....+.+|++|+|.|.+.+.  +.+. +.|++.  +..   +. ..           ...+....      ..+|.|.++
T Consensus        14 ~~~~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   92 (256)
T 3juy_B           14 GAEVKKPGASVKVSCQASGYRFSHFT-VHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   92 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSC-EEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceecCCCeEEEEEEeecccccCce-EEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCC
Confidence            44578899999999999873  4455 999972  211   10 00           01122222      236999999


Q ss_pred             cCCCCeEEEEEEEcC-----------CCCCCcccEEEEEeeeeecc-----cccCCCCceecCccceeeeecCceEEEEE
Q psy3823         183 TRHSGGLYACSAINS-----------QGEGGSTPFDLNINKMVNLI-----FNSIDEPVCKQSQQRIYGALRNEQVLVSC  246 (365)
Q Consensus       183 ~~~d~G~Y~C~~~~~-----------~~~~~s~~~~l~v~~~~~~~-----~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  246 (365)
                      +.+|+|.|.|.+.+.           ..........|.|.......     .....+|.+...+.. ..+.+|+.++|.|
T Consensus        93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~G~~v~L~C  171 (256)
T 3juy_B           93 RSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGT-LSLSPGERATFSC  171 (256)
T ss_dssp             CGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSE-EEECTTSCEEEEE
T ss_pred             CcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCe-EEEeCCCCEEEEE
Confidence            999999999999986           11122244567776210000     000002333333333 3388999999999


Q ss_pred             EEeeeCC-CceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         247 TVDANPQ-AQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       247 ~~~~~p~-~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      .+.+.|. +. +.|++.......             ...+.....++....|.|.+++.+|+|.|.|.|.|..+
T Consensus       172 ~~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          172 RSSHSIRSRR-VAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             EESSCCTTCC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             EECCCcCCee-EEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            9998776 66 999984211111             11223333445567799999999999999999998654

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.72  E-value=3e-17  Score=145.74  Aligned_cols=170  Identities=15%  Similarity=0.211  Sum_probs=112.2

Q ss_pred             EEEecCCcEEEEEEeCCC-CCc--ceEEEEeCCCcCCCCCCceeE-ecCC---eEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          22 YGALRNEQVLVSCTVDAN-PQA--QYFTWAFNNSGTAPRPLTSYS-IQDG---STSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~-p~~--~~v~W~~~~~~~l~~~~~~~~-~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ..+.+|+.++|.|.+.+. |.+  ..++|++++...+........ ..++   ..+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       123 ~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~  202 (323)
T 2wqr_A          123 FDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL  202 (323)
T ss_dssp             HHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             HHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCC
Confidence            346789999999996554 433  389999976431433222111 1122   344799999999999999999998764


Q ss_pred             CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC------
Q psy3823          95 NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS------  167 (365)
Q Consensus        95 ~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~------  167 (365)
                      ..  ...+.|....   ....+|.+.+.+...    ....|+.++|.|.+.| .|++..+.|++||..+.....      
T Consensus       203 ~~--~~~~~v~~~~---~~~~~P~v~~~~~~~----~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  273 (323)
T 2wqr_A          203 PR--ALMRSTTKTS---GPRAAPEVYAFATPE----WPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPR  273 (323)
T ss_dssp             SS--CEEEEECCCC---SCCBCCEEEEEECCC----CTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCE
T ss_pred             CC--CeeeEEEccC---CCCCCCEEEEeCCCh----HHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcc
Confidence            33  3344441100   013577766654331    1223999999999998 444446999999998854210      


Q ss_pred             ---CceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         168 ---AGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       168 ---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                         .+.....+.|.|..+..+|+|.|+|.|.|....
T Consensus       274 ~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          274 KTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             ECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             cCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence               111122457899999999999999999998765

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.72  E-value=1.2e-16  Score=134.26  Aligned_cols=170  Identities=13%  Similarity=0.107  Sum_probs=110.9

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc-CCC-----------------CCCceeEec--CCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG-TAP-----------------RPLTSYSIQ--DGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~-~l~-----------------~~~~~~~~~--~~~~~~l~i~~   76 (365)
                      +....+.+|++++|.|...+.|  .+ .+.|+|.... .+.                 ...+.....  ......|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAH-TMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK   85 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCc-eEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence            3446789999999999976665  56 8999986421 010                 011111111  13345899999


Q ss_pred             CCCCCCeEEEEEEEeCCC-----C---CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-
Q psy3823          77 TSELEYGTLLCWARNEQG-----N---QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-  147 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~~-----~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-  147 (365)
                      ++.+|+|.|.|.+.+..+     .   ....+.|.|...     +..+|.+......    ..+.+|+.++|.|.+.+. 
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~-----~~~~P~v~~~~~~----~~~~~g~~v~L~C~~~g~~  156 (225)
T 1op3_H           86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPA-----STKGPSVFPLAPS----SKSTSGGTAALGCLVKDYF  156 (225)
T ss_dssp             CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESC-----SCBCCEEEEECCC----TTCCCCCEEEEEEEEEEEB
T ss_pred             CChhhCEEEEEEEecCCCccccccceeecCCEEEecccC-----CCcCCeEEEeccc----ccccCCCcEEEEEEEEeEE
Confidence            999999999999998754     1   113567887321     1234655543322    135689999999999986 


Q ss_pred             CCCCeeEEEeCCeEEee--CC----CCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         148 PPYKKLIWTHNGITISN--NA----SAGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       148 p~~~~i~W~~~~~~l~~--~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      |.+..+.|++++..+..  ..    ..+.......|.|.+...+| |.|+|.|.|..+
T Consensus       157 P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  213 (225)
T 1op3_H          157 PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  213 (225)
T ss_dssp             SSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGG
T ss_pred             CCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCC
Confidence            66545999998865311  00    11111223568898888888 999999999654

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.72  E-value=1.3e-16  Score=133.67  Aligned_cols=173  Identities=13%  Similarity=0.191  Sum_probs=111.3

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--CeE---Eee---C-----------CCCceEEe------eceEEEeee
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GIT---ISN---N-----------ASAGRIIT------NQTLVLQSV  182 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~---l~~---~-----------~~~~~~~~------~~~l~i~~~  182 (365)
                      ..+.+|++++|.|.+.+.+  .+. +.|+++  +..   +..   .           ...+....      +.+|.|.++
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (222)
T 1q9r_B           10 GLVQSGGSLRLSCATSGFTFTDYY-MSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (222)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSC-EEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             eeEcCCCEEEEEEEecCccCCCCc-EEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence            3578999999999998764  445 999984  221   100   0           01122221      348999999


Q ss_pred             cCCCCeEEEEEEEcCCCC----CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCC-ce
Q psy3823         183 TRHSGGLYACSAINSQGE----GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQA-QY  256 (365)
Q Consensus       183 ~~~d~G~Y~C~~~~~~~~----~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~  256 (365)
                      +..|+|.|.|.+.+..+.    .......|.|...      ...+|.+........ +..|+.++|.|.+.+. |.| . 
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~------~~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~~-  160 (222)
T 1q9r_B           89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAA------KTTPPSVYPLAPGSA-AQTNSMVTLGCLVKGYFPEPVT-  160 (222)
T ss_dssp             CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSS------CCBCCEEEEECCCSC-CCCSSEEEEEEEEEEEBSSCCE-
T ss_pred             CcccCeEEEEEEeccCCcccceEeCCceEEEeccC------CCCCCeEEEcccccc-ccCCCcEEEEEEEccEECCCCE-
Confidence            999999999999987641    2223456777610      012344433221111 5679999999999986 877 6 


Q ss_pred             eEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         257 FTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       257 ~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      +.|+++|...... .......++.   .+.|.|.++..+| |.|+|.|.|..|.......
T Consensus       161 v~W~~~g~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~  218 (222)
T 1q9r_B          161 VTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK  218 (222)
T ss_dssp             EEEGGGTBCTTEE-EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EEEecCCeEcceE-eccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEe
Confidence            9999987642211 0111112222   3468999999889 9999999999987654433

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.72  E-value=1e-16  Score=133.00  Aligned_cols=168  Identities=16%  Similarity=0.246  Sum_probs=108.5

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--CeEEe----eC----------CCCceEEe------eceEEEeeecCC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GITIS----NN----------ASAGRIIT------NQTLVLQSVTRH  185 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~l~----~~----------~~~~~~~~------~~~l~i~~~~~~  185 (365)
                      ..+.+|++++|.|.+.+.+  .+. +.|+++  +..+.    ..          ...+....      +.+|.|.+++..
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   88 (210)
T 3d9a_H           10 SLVKPSQTLSLTCSVTGDSITSDY-WSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE   88 (210)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSC-EEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEecCCCcEEEEEEEecccCCCCc-EEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence            3678999999999999865  244 999984  32221    00          01122221      238999999999


Q ss_pred             CCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCC-ceeEEEeCC
Q psy3823         186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQA-QYFTWAFNN  263 (365)
Q Consensus       186 d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~~W~~~~  263 (365)
                      |+|.|.|.+.+..  .......|.|..      ....+|.+....... .+..|+.++|.|.+.+. |.| . +.|++++
T Consensus        89 D~G~Y~C~~~~~~--~~~~~~~l~V~~------~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~-v~W~~~~  158 (210)
T 3d9a_H           89 DTATYYCANWDGD--YWGQGTLVTVSA------AKTTPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVT-VTWNSGS  158 (210)
T ss_dssp             GCEEEEEEETTSS--CBCCCEEEEECC------CCCBCCEEEEECCTT-SCCCSSEEEEEEEEEEEBSSCCE-EEEGGGT
T ss_pred             cCEEEEEEEecCc--ccccceEEEecc------CCCCCCEEEEecCCc-ccccCCcEEEEEEEeeEecCCcE-EEEeeCC
Confidence            9999999999864  222345666651      001244444222111 26789999999999987 777 6 9999987


Q ss_pred             CCCCCCCCceeEeeCC---CEEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823         264 SDTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGSQRT  310 (365)
Q Consensus       264 ~~~~~~~~~~~~~~~~---~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~  310 (365)
                      .......... ...++   ..+.|.|..+..+| |.|+|.|.|..|....
T Consensus       159 ~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          159 LSSGVHTFPA-VLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             BCTTEEECCC-EEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             cccceEEcCC-ccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            6421111111 11122   23568999888767 9999999999887643

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.72  E-value=3.6e-16  Score=133.41  Aligned_cols=171  Identities=12%  Similarity=0.110  Sum_probs=106.4

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCC-----eEEeeC-------CCCceEEe----eceEEEeeecCCCCeEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNG-----ITISNN-------ASAGRIIT----NQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~-----~~l~~~-------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+.+|++|+|.|.+.+.|.+. +.|+++.     ..+...       ...+....    ..+|.|.+++.+|+|.|.|.
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~~~-i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   92 (250)
T 3esu_F           14 LSASLGDRVTISCRASQDIRNY-LNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQ   92 (250)
T ss_dssp             EEECTTCCEEEEEEESSCCTTC-EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEeeCCCcEEEEEEecccCCce-EEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEE
Confidence            3578999999999999888886 9999842     111100       01112111    23799999999999999999


Q ss_pred             EEcCCCCCCcccEEEEEeeeeecc------c---ccCCCCceecCccceeeeecCceEEEEEEEeeeC--CCceeEEEeC
Q psy3823         194 AINSQGEGGSTPFDLNINKMVNLI------F---NSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP--QAQYFTWAFN  262 (365)
Q Consensus       194 ~~~~~~~~~s~~~~l~v~~~~~~~------~---~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~~W~~~  262 (365)
                      +.|..+........|.|..+....      .   .....+.....+.. ..+.+|+.++|.|.+.+.|  .+. +.|+++
T Consensus        93 ~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~-v~W~k~  170 (250)
T 3esu_F           93 QGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGP-ELVKPGASVKISCKDSGYAFSSSW-MNWVKQ  170 (250)
T ss_dssp             ECSSSSCEECCCEEEEEC------------------------CEECCC-EEECTTCCEEEEEECCSTTGGGSE-EEEEEE
T ss_pred             EeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCc-eEEcCCceEEEEEEecCCcccCCE-EEEEEE
Confidence            998766544345567776110000      0   00001111122222 3388999999999998866  566 999997


Q ss_pred             CCCCCCC------------------CCceeEe--eCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         263 NSDTAPR------------------PLTSYSI--QDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       263 ~~~~~~~------------------~~~~~~~--~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      .......                  ..+....  .......|.|.+++.+|+|.|.|.|.|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          171 RPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             CTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            3211110                  0122221  124456799999999999999999997

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.72  E-value=3.8e-17  Score=137.87  Aligned_cols=172  Identities=13%  Similarity=0.187  Sum_probs=112.3

Q ss_pred             ceEEEEecCCcEEEEEEeCC-CCC-cceEEEEeCCCcCC-CCCCcee-EecCC---eEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          19 QRIYGALRNEQVLVSCTVDA-NPQ-AQYFTWAFNNSGTA-PRPLTSY-SIQDG---STSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~-~p~-~~~v~W~~~~~~~l-~~~~~~~-~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      +....+.+|+.++|.|.+.+ .|. +..++|++++.. + ....... ...++   ..+.|.|.+++.+|.|.|+|.+.+
T Consensus        20 p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~-~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~   98 (231)
T 2w59_A           20 PSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSG-NLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQH   98 (231)
T ss_dssp             CCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSS-CCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             cChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCee-ccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEc
Confidence            33344678999999999655 463 239999999987 5 3322211 11222   234799999999999999999998


Q ss_pred             CCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEEeCCeEEeeCCC---
Q psy3823          92 EQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWTHNGITISNNAS---  167 (365)
Q Consensus        92 ~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~~---  167 (365)
                      ..+.  ..+.+.|....   ....+|.+.+.....   .. ..|+.++|.|.+.|. |+...|.|++||..+.....   
T Consensus        99 ~~~~--~~~~~~v~~~~---~~~~~P~v~v~~~~~---~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~  169 (231)
T 2w59_A           99 EELP--LPLSKSVYRNT---GPTTPPLIYPFAPHP---EE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTT  169 (231)
T ss_dssp             TTCS--SCEEEEECCCC---SCCBCCEEEEECCCG---GG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEEC
T ss_pred             CCCC--CceEEEEecCC---CCCcCCEEEEeCCCH---HH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccC
Confidence            7654  34445541100   012467766554321   12 235679999999985 43355999999998854320   


Q ss_pred             --------------C-ceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         168 --------------A-GRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       168 --------------~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                                    . +.....+.|.|.....+|.|.|+|.|.|....
T Consensus       170 ~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          170 AVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             CCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             ccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence                          0 11112346778888888899999999998754

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.72  E-value=3.6e-16  Score=130.86  Aligned_cols=171  Identities=14%  Similarity=0.144  Sum_probs=111.3

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-CC------C-------------CCceeEe--cCCeEEEEEEc
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-AP------R-------------PLTSYSI--QDGSTSVARYT   75 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l~------~-------------~~~~~~~--~~~~~~~l~i~   75 (365)
                      ....+.+|++++|.|...+.+  .. .+.|||..... ..      .             ..+....  .......|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (221)
T 3m8o_H            8 GGGLVQPGGSLKLSCAASGFTLSGS-NVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN   86 (221)
T ss_dssp             SCEEECTTCCEEEEEEEESSCGGGS-EEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred             CCEEEcCCCCEEEEEEccccccccc-EEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence            346689999999999965533  45 99999853210 00      0             0111111  12344579999


Q ss_pred             cCCCCCCeEEEEEEEeCCC--CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCC-CC
Q psy3823          76 PTSELEYGTLLCWARNEQG--NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPP-YK  151 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~--~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~-~~  151 (365)
                      +++.+|+|.|.|.+.+...  .......|.|..     .+..+|.+......    .. .+|+.++|.|.+.+ .|. +.
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~-----~~~~~p~v~~~~~~----~~-~~g~~v~L~C~~~~~~P~~~~  156 (221)
T 3m8o_H           87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSS-----ASPTSPKVFPLSLC----ST-QPDGNVVIACLVQGFFPQEPL  156 (221)
T ss_dssp             SCCGGGCEEEEEEEESCTTCCCBBCCEEEEECS-----CCCBCCEEEEEECC----SC-CCTTEEEEEEEEEEEBSSCSE
T ss_pred             CCCHHHCEEEEEEEECCChhheECCCEEEEEec-----CCCCCCeEEEecCc----cc-ccCCCEEEEEEEEeeECCCCE
Confidence            9999999999999988642  222556777731     11235655422211    12 68999999999998 665 44


Q ss_pred             eeEEEeCCeEEeeCC-------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         152 KLIWTHNGITISNNA-------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       152 ~i~W~~~~~~l~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      .+.|+++|..+....       ..+.......|.|.....+|+|.|+|.+.|..+..
T Consensus       157 ~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          157 SVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             EEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            599999987663211       11112223468899999999999999999987643

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.72  E-value=3.7e-17  Score=132.30  Aligned_cols=152  Identities=14%  Similarity=0.187  Sum_probs=101.7

Q ss_pred             ceEEEEecCCcEEEEEEeCC-CCCcceEEEEeCC-CcCCC---C--------CC-ceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          19 QRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNN-SGTAP---R--------PL-TSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~-~~~l~---~--------~~-~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      ...+.+.+|++++|.|.... .+.+ .+.|+|++ .. +.   .        .. ..+...+....+|.|.+++.+|+|.
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~-~i~W~k~~~~~-i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~   83 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQ-RLTWLHTTNQK-ILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGD   83 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCS-EEEEESSSSCE-EEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEE
T ss_pred             cceEEEEeCCCEEEeCCCCCCCcee-EEEEEecCCeE-EEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeE
Confidence            45677899999999999633 3356 99999952 21 11   0        00 0011111112379999999999999


Q ss_pred             EEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEee
Q psy3823          85 LLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISN  164 (365)
Q Consensus        85 Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~  164 (365)
                      |+|.+.+.. .....+.|.|...      ...|.+..            .++.++|.|.+...|.+. +.|++++..+..
T Consensus        84 Y~C~v~~~~-~~~~~~~L~V~~~------~~~P~i~~------------~~~~v~L~C~~~~gp~p~-i~W~~~~~~l~~  143 (180)
T 2dru_A           84 YYMRMLHET-EDQWKITMEVYEM------VSKPMIYW------------ECSNATLTCEVLEGTDVE-LKLYQGKEHLRS  143 (180)
T ss_dssp             EEEEEESSS-EEEEEEEEEEECC------CCCCEEEE------------EGGGTEEEEECSSCTTCE-EEEEETTEEEEE
T ss_pred             EEEEEEcCC-eEEEEEEEEEECC------CCCCEEEe------------cCCCEEEEEEeCCCCCCE-EEEEECCeECcC
Confidence            999998765 4447778888311      22344332            345699999994337666 999999998851


Q ss_pred             CCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         165 NASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       165 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                             ..+.+|.+..  .+|+|.|+|.|.|..+..
T Consensus       144 -------~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~  171 (180)
T 2dru_A          144 -------LRQKTMSYQW--TNLRAPFKCKAVNRVSQE  171 (180)
T ss_dssp             -------ESSSEEEEEC--SCCSSCEEEEEEETTEEE
T ss_pred             -------CCCCEEEEEE--hhcCccEEEEEecCcCcc
Confidence                   2234565533  789999999999998754

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.72  E-value=4.2e-17  Score=130.80  Aligned_cols=149  Identities=11%  Similarity=0.096  Sum_probs=102.3

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC-C---------ceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP-L---------TSYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-~---------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      ..+.+.+|++++|.|... .|.+ .+.|++++.. +..- .         ..+........+|.|.+++.+|+|.|+|.+
T Consensus         3 ~~v~~~~G~~VtL~c~~~-~~~~-~i~W~~~~~~-i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~   79 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSN-VPLK-EVLWKKQKDK-VAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES   79 (171)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCS-CEEEEETTEE-EEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEEC
T ss_pred             cEEEEEcCCCEEEcCCCC-CCcc-eEEEEeCCcE-EEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEE
Confidence            346688999999999974 4777 9999998764 3110 0         001111111137999999999999999999


Q ss_pred             EeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc
Q psy3823          90 RNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG  169 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~  169 (365)
                      .+..+  ...+.|.|...      ...|.+.....            ...|.|.+.+.|.+. +.|+++|..+.....  
T Consensus        80 ~n~~~--~~~~~L~V~~~------~~~p~i~~~~~------------~~~L~C~~~~~p~p~-i~W~~~~~~l~~~~~--  136 (171)
T 1ccz_A           80 PNITD--TMKFFLYVLEM------VSKPMIYWECS------------NATLTCEVLEGTDVE-LKLYQGKEHLRSLRQ--  136 (171)
T ss_dssp             TTCCS--CEEEEEEEECC------CCCCEEEEETT------------TTEEEEECSSCSSCE-EEEEETTEEEEEESS--
T ss_pred             eCCCC--cEEEEEEEECc------CCCCEEEEecC------------CcEEEEEeCCCCCcE-EEEEECCEECcCCcc--
Confidence            88766  57778888321      22344443210            127999999888776 999999998864221  


Q ss_pred             eEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         170 RIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       170 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                           ..+.+.  ..+|.|.|+|.|.|..+..
T Consensus       137 -----~~l~~~--~~~~~g~Y~C~a~N~~~~~  161 (171)
T 1ccz_A          137 -----KTMSYQ--WTNLRAPFKCKAVNRVSQE  161 (171)
T ss_dssp             -----SEEEEE--CSCCSSCEEEEEEETTEEE
T ss_pred             -----eEEEEe--ccCCCceEEEEEEcccCcc
Confidence                 233333  4788999999999998754

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.71  E-value=4.2e-16  Score=135.34  Aligned_cols=177  Identities=12%  Similarity=0.071  Sum_probs=114.2

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C-------------CC----CCceeEe-cCCeEEEEEEccCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A-------------PR----PLTSYSI-QDGSTSVARYTPTS   78 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l-------------~~----~~~~~~~-~~~~~~~l~i~~~~   78 (365)
                      .+..+.+.+|++++|.|...+.|.+ .+.|+|++... .             ..    ..+.... .......|.|.+++
T Consensus        30 ~p~~v~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~  108 (279)
T 2wbj_D           30 HPSWVISKSGTSVKIECRSLDFQAT-TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAH  108 (279)
T ss_dssp             ECSEEEEETTSCEEEEEEESSSCEE-EEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCC
T ss_pred             CCCeEEecCCCeEEEEEEeCCCCCC-eEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCC
Confidence            3556789999999999998777777 99999975210 1             00    0111111 12345689999999


Q ss_pred             CCCCeEEEEEEEeCCCC------CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC-C
Q psy3823          79 ELEYGTLLCWARNEQGN------QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY-K  151 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~~~------~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~  151 (365)
                      .+|+|.|+|.+.+..+.      ......|+|.....   ...+|.+.+....   ...+.+|+.++|.|.+.+.+++ .
T Consensus       109 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~~~P~v~~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~  182 (279)
T 2wbj_D          109 PEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLK---NVFPPEVAVFEPS---EAEISHTQKATLVCLATGFYPDHV  182 (279)
T ss_dssp             GGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGG---GCBCCEEEEEECC---HHHHHHHSCCEEEEEEEEEBSSCE
T ss_pred             ccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCC---CCCCCEEEEECCC---cccccCCCceEEEEEEeeEcCCCc
Confidence            99999999999984321      11346677732100   0136766654322   1245579999999999986443 4


Q ss_pred             eeEEEeCCeEEeeCC-------------CCceEEeeceEEEeeecCC-CCeEEEEEEEcCCCCC
Q psy3823         152 KLIWTHNGITISNNA-------------SAGRIITNQTLVLQSVTRH-SGGLYACSAINSQGEG  201 (365)
Q Consensus       152 ~i~W~~~~~~l~~~~-------------~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~  201 (365)
                      .+.|++||.++....             ..+.......|.|...... +.|.|+|.+.|.....
T Consensus       183 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~  246 (279)
T 2wbj_D          183 ELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  246 (279)
T ss_dssp             EEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred             EEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence            599999998875321             1111122345777776664 4788999999976543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.71  E-value=7.7e-16  Score=133.88  Aligned_cols=184  Identities=15%  Similarity=0.185  Sum_probs=113.6

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeCC--eEEe---e------------CCCCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHNG--ITIS---N------------NASAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~~--~~l~---~------------~~~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++|+|.|.+.+.+  .+. +.|++++  ..+.   .            ....+....      ..+|.|.+++.
T Consensus        36 ~~v~~G~~v~L~C~~~g~~~~~~~-v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  114 (282)
T 1qok_A           36 ELVRSGTSVKLSCTASGFNIKDSY-MHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTS  114 (282)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSC-EEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEEeCCCeEEEEEeccCCCCCCce-EEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCCh
Confidence            4678999999999998865  345 9999843  2111   0            001122221      25799999999


Q ss_pred             CCCeEEEEEEEcCCCC----CCcccEEEEEeeeeec-----ccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCc
Q psy3823         185 HSGGLYACSAINSQGE----GGSTPFDLNINKMVNL-----IFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ  255 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~----~~s~~~~l~v~~~~~~-----~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  255 (365)
                      +|+|.|.|.+.|..|.    .....+.|.|......     ......++.+...+ ....+.+|+.++|.|.+.+.| +.
T Consensus       115 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~v~~G~~v~L~C~~~~~~-~~  192 (282)
T 1qok_A          115 EDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSP-AIMSASPGEKVTITCSASSSV-SY  192 (282)
T ss_dssp             GGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEEC-SEEEECTTCCEEEEEEESSCC-SC
T ss_pred             hhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCC-CEEEEcCCCcEEEEEEecCCC-ce
Confidence            9999999999998652    1123456777710000     00000012222222 223388999999999999888 77


Q ss_pred             eeEEEe--CCCCCC-----------CCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc-ceecEEEEEE
Q psy3823         256 YFTWAF--NNSDTA-----------PRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS-QRTPCTFHVV  317 (365)
Q Consensus       256 ~~~W~~--~~~~~~-----------~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~  317 (365)
                       +.|++  +|....           ....++....++....|.|.+++.+|+|.|.|.|.|..+. ......|.|.
T Consensus       193 -v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  267 (282)
T 1qok_A          193 -MHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK  267 (282)
T ss_dssp             -CEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             -EEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence             99999  443220           0012222233445667999999999999999999985432 1233455554

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.71  E-value=1e-17  Score=141.51  Aligned_cols=176  Identities=10%  Similarity=0.119  Sum_probs=110.1

Q ss_pred             cceecCCcEEEEEEEEecCC-CCeeEEEeC--CeEE---ee-------CCCCceEEe----eceEEEeeecCCCCeEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPP-YKKLIWTHN--GITI---SN-------NASAGRIIT----NQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~-~~~i~W~~~--~~~l---~~-------~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C  192 (365)
                      ..+.+|++++|.|.+.+.++ +..+.|+++  +..+   ..       ....+....    +.+|.|.+++.+|+|.|.|
T Consensus        29 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C  108 (234)
T 2j6e_L           29 ASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYC  108 (234)
T ss_dssp             CCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEEE
T ss_pred             EEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEEE
Confidence            46789999999999987543 424999985  3221   10       001122211    3489999999999999999


Q ss_pred             EEEcCCCC--CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeCCCCCCCC
Q psy3823         193 SAINSQGE--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSDTAPR  269 (365)
Q Consensus       193 ~~~~~~~~--~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~  269 (365)
                      .+.+..+.  .......|.|..      ....+|.+........ ...|+.++|.|.+.+.+++ ..+.|+++|......
T Consensus       109 ~~~~~~~~~~~~~~~~~l~V~~------~~~~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~  181 (234)
T 2j6e_L          109 ATWDDSLSAVIFGGGTKLTVLG------QPKAAPSVTLFPPSSE-ELQANKATLVCLISDFFPGAVTVAWKADGAPVKAG  181 (234)
T ss_dssp             EEEETTTTEEEECCCBCCCBCC------CCCCCCCCCEECCCHH-HHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSS
T ss_pred             EEEcCCcceeEecCCEEEEEec------CCCCCCcccccCCChh-HhcCCceEEEEEEEEEcCCceEEEEEECCEECCCC
Confidence            99988762  111233445530      0003444432221111 3468899999999986443 249999988754322


Q ss_pred             CCce--eEeeCC---CEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         270 PLTS--YSIQDG---STSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       270 ~~~~--~~~~~~---~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      ....  ....++   ..+.|.|.++..+|+|.|+|.|.|..+..+.++
T Consensus       182 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          182 VETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             EEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             ccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            1100  011122   235799999999999999999999988765543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.71  E-value=6.6e-17  Score=134.80  Aligned_cols=170  Identities=12%  Similarity=0.136  Sum_probs=107.2

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeCC--eEEe----------eCCCCceEEe----eceEEEeeecCCCCeEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHNG--ITIS----------NNASAGRIIT----NQTLVLQSVTRHSGGLYA  191 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~~--~~l~----------~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~  191 (365)
                      ..+.+|++++|.|.+.+.+  .+. +.|++++  ..+.          .....+....    ..+|.|.+++..|+|.|.
T Consensus        10 ~~v~~G~~v~L~C~v~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   88 (216)
T 2xzc_L           10 VSAAPGQKVTISCSGSSSNIGNNY-VSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY   88 (216)
T ss_dssp             EEECTTCCEEEEEECCTTTGGGSC-CEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             EEecCCCeEEEEEEeecCCCCCCe-EEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEE
Confidence            3578999999999954333  344 9999843  2211          0001122221    347999999999999999


Q ss_pred             EEEEcCCC-CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEeCCCCCCCC
Q psy3823         192 CSAINSQG-EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPR  269 (365)
Q Consensus       192 C~~~~~~~-~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~  269 (365)
                      |.+.|..+ ........|.|..       ...+|.+........ ...|+.++|.|.+.+. |++..+.|+++|......
T Consensus        89 C~~~~~~~~~~~~~~~~l~V~~-------~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~  160 (216)
T 2xzc_L           89 CGTWDSSLNPVFGGGTKLEIKR-------TVAAPSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  160 (216)
T ss_dssp             EEEECTTSCEEEBCCEEEEECC-------CCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             EEEEeCCCcceECCCEEEEEcC-------CCCCCceEEeCCChh-hccCCcEEEEEEEEeEcCCceEEEEEECCeecCCC
Confidence            99999876 2222345566651       113455443222111 3468899999999985 444249999988744322


Q ss_pred             -CCceeE--eeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         270 -PLTSYS--IQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       270 -~~~~~~--~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                       ......  ..++.   .+.|.|..+..+|+|.|+|.|.|.....
T Consensus       161 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          161 SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             eeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence             010111  12222   3479999999999999999999987654

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.71  E-value=4.3e-16  Score=134.45  Aligned_cols=175  Identities=11%  Similarity=0.207  Sum_probs=106.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC-----CcceEEEEeCCCcC-CC------------CCCceeEecCCeEEEEEEccCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP-----QAQYFTWAFNNSGT-AP------------RPLTSYSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p-----~~~~v~W~~~~~~~-l~------------~~~~~~~~~~~~~~~l~i~~~~~~   80 (365)
                      +..+.+.+|++++|.|...+.+     .+ .+.|+|..... +.            ...+...........|.|.+++.+
T Consensus        22 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~-~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  100 (268)
T 1x9q_A           22 PLSLPVSLGDQASISCRSSQSLVHSNGNT-YLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAE  100 (268)
T ss_dssp             CSEECCCTTCCEEEEEEESSCCBCTTSCB-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCeEEecCCCCEEEEeEecCCcccccCCc-eEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChh
Confidence            4567789999999999977776     36 99999864210 10            011112222334458999999999


Q ss_pred             CCeEEEEEEEeCCCCC-cccEEEEEEeccccCCCCCCCe-------------EEEEcCCccCccceecCCcEEEEEEEEe
Q psy3823          81 EYGTLLCWARNEQGNQ-RTPCTFHVVKAGECEHPVDKPS-------------VQIKLGRNLNASVLNEGVDIYFDCHIQA  146 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~-~~~~~l~V~~~~~~~~~~~~p~-------------~~~~~~~~~~~~~~~~g~~v~l~C~~~~  146 (365)
                      |+|.|.|.+.+..+.. .....|.|........|..+|.             +.+...   ....+.+|++++|.|.+.+
T Consensus       101 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~---~~~~v~~G~~v~L~C~~~~  177 (268)
T 1x9q_A          101 DLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDET---GGGLVQPGGAMKLSCVTSG  177 (268)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEE---CCEEECTTCCEEEEEEEES
T ss_pred             HCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECC---CceEecCCCcEEEEEEecC
Confidence            9999999998865422 1345666632111000111221             122211   2346889999999999988


Q ss_pred             cCC-CCeeEEEeC--CeEEe---e--------------CCCCceEEe------eceEEEeeecCCCCeEEEEEEEcC
Q psy3823         147 NPP-YKKLIWTHN--GITIS---N--------------NASAGRIIT------NQTLVLQSVTRHSGGLYACSAINS  197 (365)
Q Consensus       147 ~p~-~~~i~W~~~--~~~l~---~--------------~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~  197 (365)
                      .++ ...+.|+++  +..+.   .              ....+....      ..+|.|.+++.+|+|.|+|.+.+.
T Consensus       178 ~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          178 FTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             SCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            653 234999984  33221   0              011122221      257999999999999999999874

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.71  E-value=7.5e-16  Score=131.17  Aligned_cols=172  Identities=14%  Similarity=0.068  Sum_probs=106.7

Q ss_pred             cceecCCcEEEEEEEEecC-----CCCeeEEEeC--CeE---EeeC-------CCCceEEe----eceEEEeeecCCCCe
Q psy3823         130 SVLNEGVDIYFDCHIQANP-----PYKKLIWTHN--GIT---ISNN-------ASAGRIIT----NQTLVLQSVTRHSGG  188 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p-----~~~~i~W~~~--~~~---l~~~-------~~~~~~~~----~~~l~i~~~~~~d~G  188 (365)
                      ..+.+|++++|.|.+.+.+     .+. +.|+++  +..   +...       ...+....    ..+|.|.+++.+|+|
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   89 (247)
T 1svz_A           11 LPVSLGDQASISCRSSQTIVHNNGNTY-LEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG   89 (247)
T ss_dssp             EEECTTCCEEEEEEESSCCBCTTSCBC-EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEecCCCCEEEEEeCCCcccccCCCce-EEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCE
Confidence            4678999999999998876     344 999983  221   1110       01122211    347999999999999


Q ss_pred             EEEEEEEcCCCCCCcccEEEEEeeeeec---ccccCCCCceecCccceeeeecCceEEEEEEEeeeC--CCceeEEEeCC
Q psy3823         189 LYACSAINSQGEGGSTPFDLNINKMVNL---IFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNN  263 (365)
Q Consensus       189 ~Y~C~~~~~~~~~~s~~~~l~v~~~~~~---~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~~W~~~~  263 (365)
                      .|.|.+.+..+........|.|..+...   ......++.......... +..|+.++|.|.+.+.+  .+. +.|++++
T Consensus        90 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~~~~~~~~~~~-v~W~k~~  167 (247)
T 1svz_A           90 IYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPEL-KKPGETVKISCKATNYAFTDYS-MHWVKQA  167 (247)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEE-ECTTCCEEEEEEEESSCGGGSC-EEEEEEC
T ss_pred             EEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCcee-ecCCCcEEEEEEEcCcccCCcE-EEEEEeC
Confidence            9999999876543334466777611000   000000111222222223 88999999999998875  455 9999964


Q ss_pred             CCCCC------------------CCCceeEe--eCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         264 SDTAP------------------RPLTSYSI--QDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       264 ~~~~~------------------~~~~~~~~--~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      .....                  ...+....  .......|.|.+++.+|+|.|.|.|.|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          168 PGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             TTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             CCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            21110                  01122221  1344568999999999999999999985

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.71  E-value=5.8e-17  Score=135.48  Aligned_cols=180  Identities=18%  Similarity=0.184  Sum_probs=113.1

Q ss_pred             CCCCeEEEEcCCccCccc-eecCCcEEEEEEEEecC---CCCeeEEEeCCeEEeeCC-------CCceEEeeceEEEeee
Q psy3823         114 VDKPSVQIKLGRNLNASV-LNEGVDIYFDCHIQANP---PYKKLIWTHNGITISNNA-------SAGRIITNQTLVLQSV  182 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~p---~~~~i~W~~~~~~l~~~~-------~~~~~~~~~~l~i~~~  182 (365)
                      ..+|.+.+.+.+.   .. +.+|++++|.|.+.+.+   +...|.|++++..+....       ..........|.|.++
T Consensus         7 ~~~p~v~~~pp~~---~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   83 (218)
T 2rgs_A            7 EGGPSVFIFPPNI---KDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQ   83 (218)
T ss_dssp             --CCEEEEECCCH---HHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHH
T ss_pred             CCCCEEEEECcCH---HHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHH
Confidence            4567777765431   12 78999999999999873   334599999998764211       0111223457999999


Q ss_pred             cCCCCeEEEEEEEcCCCCCC-cccEEE--EEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCCceeE
Q psy3823         183 TRHSGGLYACSAINSQGEGG-STPFDL--NINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFT  258 (365)
Q Consensus       183 ~~~d~G~Y~C~~~~~~~~~~-s~~~~l--~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~~  258 (365)
                      +.+|+|.|+|.+.|..+... ...+.+  .+.          .+|.+........ ...|+.++|.|.+.| +|.+..+.
T Consensus        84 ~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~----------~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~  152 (218)
T 2rgs_A           84 DWMSGKEFKCKVNNKDLPSPIERTISKIKGLV----------RAPQVYILPPPAE-QLSRKDVSLTCLVVGFNPGDISVE  152 (218)
T ss_dssp             HHHTTCCEEEEEEETTCSSCEEEEECCCCCCC----------BCCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEE
T ss_pred             HcCCCCeEEEEEECCcCCCcceEEEeecCCCC----------CCCEEEEECCChH-HhcCCceEEEEEEEeeeCCCcEEE
Confidence            99999999999999876431 111111  222          5666543222211 235899999999998 56552499


Q ss_pred             EEeCCCCCCCCCCce--eEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         259 WAFNNSDTAPRPLTS--YSIQDGST---SVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       259 W~~~~~~~~~~~~~~--~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      |+++|..... ....  ....++..   +.|.|.....+|.|.|+|.|.|.....
T Consensus       153 W~k~g~~~~~-~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~  206 (218)
T 2rgs_A          153 WTSNGHTEEN-YKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN  206 (218)
T ss_dssp             EEETTEEECC-EEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred             EEECCEeccC-ceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence            9999874321 1111  11234433   335565555567999999999987653

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.71  E-value=3.1e-16  Score=134.43  Aligned_cols=174  Identities=15%  Similarity=0.180  Sum_probs=108.1

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeC--CeE---EeeC--------CCCceEE------eeceEEEeeecCCCCeEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHN--GIT---ISNN--------ASAGRII------TNQTLVLQSVTRHSGGLY  190 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~--~~~---l~~~--------~~~~~~~------~~~~l~i~~~~~~d~G~Y  190 (365)
                      ..+.+|++|+|.|.+.+.+.+. +.|++.  +..   +...        ...+...      ...+|.|.+++.+|+|.|
T Consensus        13 ~~v~~G~~v~L~C~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y   91 (256)
T 3tf7_C           13 VTVSEGASLQLRCKYSYSATPY-LFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVY   91 (256)
T ss_dssp             EEEETTSCEEECCEEECSSCCE-EEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEE
T ss_pred             EEecCCCeEEEEEEeCCCCCce-EEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEE
Confidence            4678999999999999887766 999982  111   1100        0111111      145799999999999999


Q ss_pred             EEEEEcCCCCC---CcccEEEEEeeeee----------cccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCcee
Q psy3823         191 ACSAINSQGEG---GSTPFDLNINKMVN----------LIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYF  257 (365)
Q Consensus       191 ~C~~~~~~~~~---~s~~~~l~v~~~~~----------~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~  257 (365)
                      .|.+.+..+..   ......|.|.....          .......+|.+...+.. ..+.+|+.++|.|.+.+. .+. +
T Consensus        92 ~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~-~~v~~G~~v~L~C~~~~~-~~~-v  168 (256)
T 3tf7_C           92 FCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRN-KVTVTGENVTLSCRQTNS-HNY-M  168 (256)
T ss_dssp             EEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSE-EEEETTCCEEECEEECSC-CSE-E
T ss_pred             EEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCE-EEEeCCCcEEEEEEcCCC-ceE-E
Confidence            99999876522   12345666661000          00000023444443333 337799999999999876 566 9


Q ss_pred             EEEeCCCCCCCC----------------CCceeEe-eCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         258 TWAFNNSDTAPR----------------PLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       258 ~W~~~~~~~~~~----------------~~~~~~~-~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .|++.+......                ..++... .......|.|.+++.+|+|.|+|.|.|..|.
T Consensus       169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          169 YWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             EEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             EEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            999843211110                0111111 1234457999999999999999999998764

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.70  E-value=5.9e-17  Score=136.32  Aligned_cols=179  Identities=12%  Similarity=0.191  Sum_probs=108.4

Q ss_pred             ceecCCcEEEEEEEEecC--CCCeeEEEeCC--eEEe----eC-----------CCCceEE------eeceEEEeeecCC
Q psy3823         131 VLNEGVDIYFDCHIQANP--PYKKLIWTHNG--ITIS----NN-----------ASAGRII------TNQTLVLQSVTRH  185 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p--~~~~i~W~~~~--~~l~----~~-----------~~~~~~~------~~~~l~i~~~~~~  185 (365)
                      .+.+|++|+|.|.+.+.+  .+. +.|+++.  ..+.    ..           ...+...      .+.+|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (227)
T 1mju_H           11 LVKPGASVKLSCKASGYTFTNYW-INWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSD   89 (227)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSC-EEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEecCCccccce-EEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcc
Confidence            578999999999998765  445 9999842  2211    00           0112222      1358999999999


Q ss_pred             CCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEeCCC
Q psy3823         186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNS  264 (365)
Q Consensus       186 d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~  264 (365)
                      |+|.|.|.+.+..+........|.|...      ...+|.+....... .+..|+.++|.|.+.+. |.+..+.|++++.
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~L~V~~~------~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  162 (227)
T 1mju_H           90 DSAVYYCANKLGWFPYWGQGTLVTVSAA------KTTAPSVYPLAPVC-GDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL  162 (227)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEECSS------CCBCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             cCEEEEEEECCCCceEEcCcEEEEEcCC------CCCCCEEEEecCCc-cccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence            9999999999863222223456777610      00234443222111 25679999999999986 6662399999876


Q ss_pred             CCCCCCCceeEeeCC---CEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         265 DTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       265 ~~~~~~~~~~~~~~~---~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      ........... ..+   ..+.|.|..+..+| |.|+|.|.|..+.......+.+..+
T Consensus       163 ~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~  218 (227)
T 1mju_H          163 SSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGP  218 (227)
T ss_dssp             CTTEEECCCEE-ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC
T ss_pred             cCCcEECCcee-cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCC
Confidence            42111000111 112   23569999988888 9999999998777655555554433

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.70  E-value=2.6e-16  Score=135.90  Aligned_cols=174  Identities=11%  Similarity=0.115  Sum_probs=112.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCC-------CC-----------ceeEe-cCCeEEEEEEccCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPR-------PL-----------TSYSI-QDGSTSVARYTPTSE   79 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~-------~~-----------~~~~~-~~~~~~~l~i~~~~~   79 (365)
                      +..+.+.+|++++|.|...+ +.+ .+.|+|.... ...       ..           +.... ......+|.|.+++.
T Consensus        34 p~~v~v~~G~~v~L~C~~~~-~~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~  110 (270)
T 3qib_D           34 PRYLVKGQGQKAKMRCIPEK-GHP-VVFWYQQNKN-NEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEA  110 (270)
T ss_dssp             CSEEEEETTSCEEEEEECCT-TCC-EEEEEEECTT-CCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCG
T ss_pred             CCeEEEcCCCCEEEEEEecC-CCc-eEEEEEECCC-CCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCH
Confidence            34577899999999999754 667 9999994321 100       00           11111 123345899999999


Q ss_pred             CCCeEEEEEEEeCCCC----CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeE
Q psy3823          80 LEYGTLLCWARNEQGN----QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLI  154 (365)
Q Consensus        80 ~d~G~Y~C~a~~~~~~----~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~  154 (365)
                      +|+|.|.|.+.+....    ......|.|.....   ...+|.+.+....   ...+.+|+.++|.|.+.+ .|.+..+.
T Consensus       111 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~---~~~~P~v~~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~v~  184 (270)
T 3qib_D          111 GDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLK---NVFPPEVAVFEPS---EAEISHTQKATLVCLATGFYPDHVELS  184 (270)
T ss_dssp             GGCEEEEEEEESCTTCCCCEECCCEEEEEESCST---TCBCCEEEEEECC---HHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             hHCeEEEEEEecCCCccceEECCcEEEEEccccc---cccCCceEEECCC---ccccccCCceEEEEEecceeCCCeEEE
Confidence            9999999999864322    11445677732100   1225665554322   224556999999999998 55564599


Q ss_pred             EEeCCeEEeeCC-------------CCceEEeeceEEEeeecCCC-CeEEEEEEEcCCCCC
Q psy3823         155 WTHNGITISNNA-------------SAGRIITNQTLVLQSVTRHS-GGLYACSAINSQGEG  201 (365)
Q Consensus       155 W~~~~~~l~~~~-------------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~  201 (365)
                      |+++|..+....             ..+.......|.|.....+| +|.|+|.+.|.....
T Consensus       185 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~  245 (270)
T 3qib_D          185 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  245 (270)
T ss_dssp             EEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred             EEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCC
Confidence            999999885321             01112223567788777777 999999999876543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.70  E-value=1.7e-17  Score=143.43  Aligned_cols=206  Identities=14%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             CCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEe
Q psy3823          78 SELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTH  157 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~  157 (365)
                      ++.|.+.|.|.+.+..+.......+.|         ..+|          ....+.+|++++|.|.+.+ +.+. +.|++
T Consensus         4 ~~~~~~~y~~~~~~~~g~~~~~~~~~v---------~~~p----------~~v~v~~G~~v~L~C~~~~-~~~~-v~W~k   62 (270)
T 3qib_D            4 ERADLIAYLKQATKGGGGSGGGGGMKV---------IQTP----------RYLVKGQGQKAKMRCIPEK-GHPV-VFWYQ   62 (270)
T ss_dssp             ------------------------CCC---------EEEC----------SEEEEETTSCEEEEEECCT-TCCE-EEEEE
T ss_pred             hhhhHHHHHHHHhccCCccccccceeE---------EeCC----------CeEEEcCCCCEEEEEEecC-CCce-EEEEE
Confidence            456889999999887665443333333         1122          1235789999999998755 4444 99998


Q ss_pred             --CCeEEe----eCCC---------C-ceEE-----eeceEEEeeecCCCCeEEEEEEEcCCCC---CCcccEEEEEeee
Q psy3823         158 --NGITIS----NNAS---------A-GRII-----TNQTLVLQSVTRHSGGLYACSAINSQGE---GGSTPFDLNINKM  213 (365)
Q Consensus       158 --~~~~l~----~~~~---------~-~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~s~~~~l~v~~~  213 (365)
                        .+....    ....         . +...     .+.+|.|.+++..|+|.|.|.+.+....   .......|.|...
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~  142 (270)
T 3qib_D           63 QNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLED  142 (270)
T ss_dssp             ECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESC
T ss_pred             ECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccc
Confidence              221110    0000         0 1111     1457999999999999999999964321   1223456777610


Q ss_pred             eecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCCceeEEEeCCCCCCCCCCce-------eEeeCCCE---E
Q psy3823         214 VNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTS-------YSIQDGST---S  282 (365)
Q Consensus       214 ~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~-------~~~~~~~~---s  282 (365)
                      .    ....+|.+.........+..|+.++|.|.+.+ .|.+..+.|+++|..........       ....++..   +
T Consensus       143 ~----~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s  218 (270)
T 3qib_D          143 L----KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSS  218 (270)
T ss_dssp             S----TTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEE
T ss_pred             c----ccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEE
Confidence            0    00014544332222122456999999999998 55552499999876443211000       00123332   4


Q ss_pred             EEEEcCCCccc-CeEEEEEEEcCCccc
Q psy3823         283 VARYTPTSELE-YGTLLCWARNEQGSQ  308 (365)
Q Consensus       283 ~l~i~~v~~~d-~G~Y~C~a~n~~g~~  308 (365)
                      .|.|.....+| +|.|+|.|.|.....
T Consensus       219 ~L~i~~~~~~d~~g~YtC~v~~~~l~~  245 (270)
T 3qib_D          219 RLRVSATFWQNPRNHFRCQVQFYGLSE  245 (270)
T ss_dssp             EEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred             EEEEcHHHhccCCCeEEEEEEecCCCC
Confidence            57888877777 999999999987654

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.70  E-value=1.1e-16  Score=133.91  Aligned_cols=173  Identities=13%  Similarity=0.252  Sum_probs=110.0

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeCC--eE---E-eeCC-------------CCceEEe------eceEEEeee
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHNG--IT---I-SNNA-------------SAGRIIT------NQTLVLQSV  182 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~~--~~---l-~~~~-------------~~~~~~~------~~~l~i~~~  182 (365)
                      ..+.+|++++|.|.+.+.+  .+. +.|++++  ..   + ....             ..+....      +.+|.|.++
T Consensus        10 ~~~~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (220)
T 1pz5_B           10 GLVQPGGSMKLSCVASGFTFSNYW-MEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNL   88 (220)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSE-EEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             EEEcCCCeEEEEEEEcCCccCCcc-EEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccC
Confidence            3678999999999998765  444 9999842  22   1 1100             1122221      238999999


Q ss_pred             cCCCCeEEEEEEEcCCCC--CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCC-ceeE
Q psy3823         183 TRHSGGLYACSAINSQGE--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQA-QYFT  258 (365)
Q Consensus       183 ~~~d~G~Y~C~~~~~~~~--~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~~  258 (365)
                      +..|+|.|.|.+.+..+.  .......|.|..      ....+|.+....... .+..|+.++|.|.+.+. |.| . +.
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~------~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~-v~  160 (220)
T 1pz5_B           89 RAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSS------ATTTAPSVYPLVPGC-SDTSGSSVTLGCLVKGYFPEPVT-VK  160 (220)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECS------SCCBCCEEEEECCCS-CCSCSSSEEEEEEEEEEBSSCCE-EE
T ss_pred             CHHHCEEEEEEEecCCcccceECCCEEEEEcc------CCCCCCeEEEccccc-ccCCCCcEEEEEEEEEEeCCCeE-EE
Confidence            999999999999987532  111345666651      001234443222111 15689999999999987 888 6 99


Q ss_pred             EEeCCCCCCCCCCceeEeeCC---CEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         259 WAFNNSDTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       259 W~~~~~~~~~~~~~~~~~~~~---~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      |++++............ ..+   ..+.|.|..+..++ |.|+|.|.|..|..+.++.
T Consensus       161 W~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          161 WNYGALSSGVRTVSSVL-QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             EGGGTCCTTEEECCCEE-ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EecCCcccceEEcCCcc-cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            99987631100000000 112   24568998888766 9999999999997765443

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.70  E-value=3.7e-17  Score=132.33  Aligned_cols=155  Identities=15%  Similarity=0.233  Sum_probs=106.7

Q ss_pred             cceecCCcEEEEEEEE--ecCCCCeeEEEe--CCeEEee---------CCCCceEEeeceEEEeeecCCCCeEEEEEEEc
Q psy3823         130 SVLNEGVDIYFDCHIQ--ANPPYKKLIWTH--NGITISN---------NASAGRIITNQTLVLQSVTRHSGGLYACSAIN  196 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~--~~p~~~~i~W~~--~~~~l~~---------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~  196 (365)
                      ....+|++|+|.|...  +.+.+ .|.|++  ++..+..         .........+++|.|.+++..|+|.|+|.+.|
T Consensus         9 v~g~~G~sv~L~~~~~~~~~~~~-~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n   87 (182)
T 1hnf_A            9 TWGALGQDINLDIPSFQMSDDID-DIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYD   87 (182)
T ss_dssp             EEEETTSCEEECCTTCCCCSSEE-EEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEeCCcccccCcCC-EEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEe
Confidence            3567899999999432  22334 499999  8887731         12223344578999999999999999999999


Q ss_pred             CCCCCC-cccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE
Q psy3823         197 SQGEGG-STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS  275 (365)
Q Consensus       197 ~~~~~~-s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~  275 (365)
                      ..|... ...+.|.|..+       ...|.+.         ..+..+.|.|.+.+.|.+. +.|+++|...  .      
T Consensus        88 ~~g~~~~~~~~~L~V~~~-------~~~P~i~---------~~~~~v~L~C~~~~~p~~~-~~W~~~g~~l--~------  142 (182)
T 1hnf_A           88 TKGKNVLEKIFDLKIQER-------VSKPKIS---------WTCINTTLTCEVMNGTDPE-LNLYQDGKHL--K------  142 (182)
T ss_dssp             TTSCEEEEEEEEEEEECC-------CCCCEEE---------EETTTTEEEEECSSCSSCE-EEEEESSCEE--E------
T ss_pred             CCCceeEEEEEEEEEcCc-------CCCCEEE---------EccCcEEEEeEccCCCCCE-EEEEECCEEC--C------
Confidence            887643 24566777611       0123221         1234799999999888887 9999988643  0      


Q ss_pred             eeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         276 IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       276 ~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      ....   .|.+.. ..+|+|.|+|.|.|..|..+....+
T Consensus       143 ~~~~---~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          143 LSQR---VITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             EESS---CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCc---EEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            1111   133332 4689999999999999988766554

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.70  E-value=1.4e-16  Score=135.51  Aligned_cols=174  Identities=14%  Similarity=0.158  Sum_probs=110.1

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEe----------------CCeEEeeCCC-CceEEe-----eceEEEeeecCCCC
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTH----------------NGITISNNAS-AGRIIT-----NQTLVLQSVTRHSG  187 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~----------------~~~~l~~~~~-~~~~~~-----~~~l~i~~~~~~d~  187 (365)
                      ..+.+|++++|.|.+.+.+.+. +.|++                ++........ .+....     +.+|.|.+++..|+
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   89 (246)
T 4dzb_B           11 VISKSGTSVKIECRSLDFQATT-MFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS   89 (246)
T ss_dssp             EEEETTSCEEEEEEESSSCCCS-EEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEeCCCcEEEEeEecCCCceE-EEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHC
Confidence            4678999999999999887777 99998                2222221110 112211     34799999999999


Q ss_pred             eEEEEEEEcCCC---CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCc-eeEEEeCC
Q psy3823         188 GLYACSAINSQG---EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNN  263 (365)
Q Consensus       188 G~Y~C~~~~~~~---~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~W~~~~  263 (365)
                      |.|.|.+.+..+   ........|.|....    ....+|.+.........+..|+.++|.|.+.+.|++. .+.|+++|
T Consensus        90 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~----~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g  165 (246)
T 4dzb_B           90 SFYICSARTSGDFGEQFFGPGTRLTVLEDL----KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  165 (246)
T ss_dssp             EEEEEEECCSSGGGCCEECCCEEEEEESCG----GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             EEEEEEEecCCCCcceEEcCCEEEEEecCC----CcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECC
Confidence            999999987543   122234566766100    0012454433222222255699999999999876652 49999987


Q ss_pred             CCCCCCCCceeE-e-------eCCCE---EEEEEcCCCccc-CeEEEEEEEcCCccce
Q psy3823         264 SDTAPRPLTSYS-I-------QDGST---SVARYTPTSELE-YGTLLCWARNEQGSQR  309 (365)
Q Consensus       264 ~~~~~~~~~~~~-~-------~~~~~---s~l~i~~v~~~d-~G~Y~C~a~n~~g~~~  309 (365)
                      ....... .... .       .++..   +.|.|.....+| +|.|+|.|.|......
T Consensus       166 ~~l~~~~-~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          166 KEVHSGV-CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEECTTE-EECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EECCCCc-ccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            6433211 1100 0       13332   348888887788 9999999999876654

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.70  E-value=8.4e-15  Score=121.37  Aligned_cols=240  Identities=12%  Similarity=0.170  Sum_probs=149.4

Q ss_pred             EEEecCCcEEEEEE-eCCCC---CcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          22 YGALRNEQVLVSCT-VDANP---QAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        22 ~~v~~G~~~~l~C~-~~~~p---~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      -.+..|+.++|.|. ..+.|   .. .|+|+|++.. +....       .   .|.+......|+|.|+|.+.+..+...
T Consensus        12 ~~i~~GdsVTLTatVaGGkP~pspy-TYqWyKDG~~-IsGaT-------~---tLti~s~t~sdSG~YqCvVTDa~Gcs~   79 (304)
T 3shs_A           12 RCFLAGDGFTLTATVAGDEPLPSNL-TYTWTKDDQP-HENNT-------A---TLTVADATSENAGSYKVTVQDTDTMTS   79 (304)
T ss_dssp             SSBCTTCCEEEEEEEEESSSCCCCE-EEEEEETTEE-CSCCS-------S---EEEESSCCGGGCEEEEEEEEETTTCCE
T ss_pred             ccccCCCCEEEEEEecCCCCCCCCc-eEEEEECCcc-ccCCc-------c---eEEeeeccccCCeEEEEEEEECCCCee
Confidence            34678999999999 56666   44 9999999977 54322       2   688888899999999999999887665


Q ss_pred             ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEE--Ee-cCC----CCeeEEEeCCeEEeeCCCCce
Q psy3823          98 TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHI--QA-NPP----YKKLIWTHNGITISNNASAGR  170 (365)
Q Consensus        98 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~--~~-~p~----~~~i~W~~~~~~l~~~~~~~~  170 (365)
                      ..-.+.|..       ...+.+.+..+   ....+..|..+.|.+.+  .| .++    ...++|++|+..+...     
T Consensus        80 tSs~VtVT~-------~a~l~i~it~P---~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA-----  144 (304)
T 3shs_A           80 VESEVFLME-------EAELIVNITEP---QHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT-----  144 (304)
T ss_dssp             EECCCEEEC-------BCCEEEEESSC---SEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS-----
T ss_pred             eeeeEEEec-------cCceeEEecCC---CceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc-----
Confidence            222333311       11223222221   12234567889999988  43 332    2459999999877532     


Q ss_pred             EEeeceEEEeeecCCCCeEEEEEEEcCCC-CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEe
Q psy3823         171 IITNQTLVLQSVTRHSGGLYACSAINSQG-EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVD  249 (365)
Q Consensus       171 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  249 (365)
                          ..|++...+..++|.|+|++.+..+ ...+..+.+.+..+.           +.........+..|+.+.|...+.
T Consensus       145 ----q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~-----------v~~~~~~~~~~~~~~~~~~~~~~~  209 (304)
T 3shs_A          145 ----QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMN-----------VDQDVVESKTVALGNEISLNYVVS  209 (304)
T ss_dssp             ----SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEE-----------EEECCCSEEEEETTSCEEECCEEE
T ss_pred             ----cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccc-----------cchhheEeehhhcCcEEEEEEEEe
Confidence                3566777788999999999999866 455556666555211           111112223377888888876653


Q ss_pred             e--------eCCCc-eeEEEeCCCCCCCC----------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         250 A--------NPQAQ-YFTWAFNNSDTAPR----------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       250 ~--------~p~~~-~~~W~~~~~~~~~~----------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      .        +|.-. .+.|+........+          ...+.+..++   +|.-....-+|...|.|.+.--..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  282 (304)
T 3shs_A          210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG---HLFKESATYDDTAKFWCVAKLYQQ  282 (304)
T ss_dssp             EECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTS---CEEESSCCGGGCEEEEEEEEEEEE
T ss_pred             eccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCc---ceeecccccccchheeeHHHHHHh
Confidence            2        22222 68898643221111          0112223334   255566778889999999975433

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.70  E-value=3.9e-17  Score=138.43  Aligned_cols=166  Identities=16%  Similarity=0.169  Sum_probs=106.8

Q ss_pred             EecCCcEEEEEEeCCC---CCcceEEEEeCCCcCCCCCCce--eEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          24 ALRNEQVLVSCTVDAN---PQAQYFTWAFNNSGTAPRPLTS--YSIQDG---STSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~---p~~~~v~W~~~~~~~l~~~~~~--~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      +.+|+.++|.|.+.+.   |.+..++|++++.. +......  ....++   ....|.|.+++.+|+|.|+|.+.+..+.
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  107 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVE-VHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFP  107 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCE-ECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCcc-ccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCC
Confidence            5689999999996554   65448999999866 4322110  011111   3357999999999999999999988775


Q ss_pred             CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCCc-eEEe
Q psy3823          96 QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASAG-RIIT  173 (365)
Q Consensus        96 ~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~~-~~~~  173 (365)
                      ......+...     .....+|.+.+.+...    ....|+.++|.|.+.| +|++..+.|++||..+....... ....
T Consensus       108 ~~~~~~v~~~-----~~~~~~P~v~v~~~~~----~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~  178 (239)
T 1i1c_A          108 APIEKSISKP-----EGTPRGPQVYTMAPPK----EEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDT  178 (239)
T ss_dssp             SCEEEEECCC-----SSCCBCCEEEEECCCG----GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECT
T ss_pred             CCcEEEEecC-----CCCCcCCEEEEECCCh----HHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECC
Confidence            4322222110     0014578777665331    2235889999999998 45545699999999875321111 1111


Q ss_pred             e------ceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         174 N------QTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       174 ~------~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      +      ..|.+.....+|.|.|+|.+.|...
T Consensus       179 dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          179 DGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             TSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence            2      2344555555679999999999764

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.4e-16  Score=132.71  Aligned_cols=174  Identities=14%  Similarity=0.149  Sum_probs=119.8

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe----eceEEEeeecCCCCeEEEEEEEcCCCCCCccc
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT----NQTLVLQSVTRHSGGLYACSAINSQGEGGSTP  205 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~  205 (365)
                      ..+.+|+.+.|.|.+.|.|.+. +.|+++|..+......+....    ...|.|.++...|+|.|+|.+.|..|... ..
T Consensus        28 ~~~~~G~~v~l~C~~~g~p~p~-i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~  105 (215)
T 3mtr_A           28 VYTWEGNQVNITCEVFAYPSAT-ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQES-LE  105 (215)
T ss_dssp             EEECTTCCEEEEEEEEEESCCE-EEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEE-EE
T ss_pred             EEEECCCCEEEEEEEeecCCCE-EEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceE-EE
Confidence            5678999999999999999886 999999998875433232222    57899999999999999999999998764 56


Q ss_pred             EEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee----eCCCc-eeEEEeCCCCCCCCCCceeEeeCCC
Q psy3823         206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA----NPQAQ-YFTWAFNNSDTAPRPLTSYSIQDGS  280 (365)
Q Consensus       206 ~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~----~p~~~-~~~W~~~~~~~~~~~~~~~~~~~~~  280 (365)
                      +.|.+.          ..|...... . . ...+..+.|.|....    .|... .+.|..++... .............
T Consensus       106 ~~l~v~----------~~P~~p~~~-~-~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~-w~~~~~~~~~~~~  171 (215)
T 3mtr_A          106 FILVQA----------DTPSSPSID-Q-V-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV-WHSKWYDAKEASM  171 (215)
T ss_dssp             EEEEEC----------CCCCCCEEE-E-E-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCC-CEEEEEEHHHHHH
T ss_pred             EEEEEC----------CCCCCCcce-E-E-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCc-ccccccccccccc
Confidence            777777          555432111 1 1 234677889987432    12221 47788766421 1000000011111


Q ss_pred             EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         281 TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       281 ~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      ...|.|.++...+.|.|+|.|.|..|....+..+.+..+
T Consensus       172 ~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~  210 (215)
T 3mtr_A          172 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ  210 (215)
T ss_dssp             HTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECC
T ss_pred             cccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEec
Confidence            135889999999999999999999998877777766544

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.70  E-value=9.8e-17  Score=135.05  Aligned_cols=172  Identities=14%  Similarity=0.151  Sum_probs=109.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCC----cceEEEEeCCCc-CCC----------------CCCceeEe--cCCeEEEEEEc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQ----AQYFTWAFNNSG-TAP----------------RPLTSYSI--QDGSTSVARYT   75 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~----~~~v~W~~~~~~-~l~----------------~~~~~~~~--~~~~~~~l~i~   75 (365)
                      +....+.+|++++|.|...+.|.    + .+.|+|.... .+.                ...+....  .......|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKV-GVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT   85 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCC-EEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCce-eEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence            34467899999999999776664    6 8999986421 010                00111111  12234689999


Q ss_pred             cCCCCCCeEEEEEEEeCCC------C--C-cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe
Q psy3823          76 PTSELEYGTLLCWARNEQG------N--Q-RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA  146 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~------~--~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  146 (365)
                      +++.+|+|.|.|.+.+..+      .  . ...+.|.|...     +..+|.+......    ..+.+|+.++|.|.+.+
T Consensus        86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~-----~~~~P~i~~~~~~----~~~~~g~~~~l~C~~~g  156 (228)
T 3bae_H           86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSA-----KTTAPSVYPLAPV----CGDTTGSSVTLGCLVKG  156 (228)
T ss_dssp             SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSC-----CCBCCEEEEECC---------CCSEEEEEEEEEE
T ss_pred             CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCC-----CCCCCEEEEeccc----ccccCCCCEEEEEEEcc
Confidence            9999999999999998654      1  1 13467887310     1235665543321    23568999999999998


Q ss_pred             c-CCCCeeEEEeCCeEEeeCCCC-----ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         147 N-PPYKKLIWTHNGITISNNASA-----GRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       147 ~-p~~~~i~W~~~~~~l~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      . |.+..+.|++++..+......     +.......|.|.....++ |.|+|.+.|..+..
T Consensus       157 ~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~  216 (228)
T 3bae_H          157 YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASST  216 (228)
T ss_dssp             EBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             EeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCC
Confidence            6 666459999987643110000     111224568888887766 99999999987643

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.69  E-value=7.9e-16  Score=132.48  Aligned_cols=162  Identities=15%  Similarity=0.174  Sum_probs=107.5

Q ss_pred             cceecCCcEEEEEEEEecC------CCCeeEEEeC--CeE---EeeC-------CCCceEEe----eceEEEeeecCCCC
Q psy3823         130 SVLNEGVDIYFDCHIQANP------PYKKLIWTHN--GIT---ISNN-------ASAGRIIT----NQTLVLQSVTRHSG  187 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p------~~~~i~W~~~--~~~---l~~~-------~~~~~~~~----~~~l~i~~~~~~d~  187 (365)
                      ..+.+|++|+|.|.+.+.+      .+. +.|+++  +..   +...       ...+....    ..+|.|.+++.+|+
T Consensus        15 v~v~~G~~v~L~C~~~~~~~~~~~~~~~-v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   93 (264)
T 2gjj_A           15 LPVSVGEKVTMTCKSSQTLLYSNNQKNY-LAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDL   93 (264)
T ss_dssp             EEEETTCCEEEEEEESSCCEETTTTEEC-EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEecCCCcEEEEeEcCCcccccccCCce-EEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHC
Confidence            4688999999999998766      344 999984  321   1110       01122221    34899999999999


Q ss_pred             eEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCC------------------cee-cCccceeeeecCceEEEEEEE
Q psy3823         188 GLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEP------------------VCK-QSQQRIYGALRNEQVLVSCTV  248 (365)
Q Consensus       188 G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p------------------~~~-~~~~~~~~~~~g~~~~l~C~~  248 (365)
                      |.|.|.+.+..+........|.|.          .+|                  .+. ...... .+.+|+.++|.|.+
T Consensus        94 G~Y~C~~~~~~~~~~~~~~~L~V~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~  162 (264)
T 2gjj_A           94 AVYYCQQYSNYPWTFGGGTRLEIK----------RGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE-VVKTGASVKISCKA  162 (264)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEE----------CC-------------------CCEEEECCCE-EECTTCCEEEEEEE
T ss_pred             EEEEEEEecCCccEecCCEEEEEE----------cCCcccccccccccccccccCcEEEeCCCCE-EEcCCCcEEEEEEE
Confidence            999999998754323344577777          332                  221 112222 38899999999999


Q ss_pred             eeeCC--CceeEEEeCCCCCCCC------------------CCceeEe--eCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         249 DANPQ--AQYFTWAFNNSDTAPR------------------PLTSYSI--QDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       249 ~~~p~--~~~~~W~~~~~~~~~~------------------~~~~~~~--~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      .+.+.  +. +.|++++......                  ..+..+.  .......|.|.+++.+|+|.|.|.|.|.
T Consensus       163 ~~~~~~~~~-v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          163 SGYSFTGYF-INWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             ESSCGGGSE-EEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             eCCccCCeE-EEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            88764  55 9999874211110                  1112221  2334668999999999999999999995

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.69  E-value=6.2e-16  Score=129.35  Aligned_cols=170  Identities=16%  Similarity=0.262  Sum_probs=110.1

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--CeE---Ee-eC-----------CCCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GIT---IS-NN-----------ASAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~---l~-~~-----------~~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++|+|.|.+.+.+  .+. +.|++.  +..   +. ..           ...+....      +.+|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (220)
T 2fbj_H           10 GLVQPGGSLKLSCAASGFDFSKYW-MSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (220)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSC-EEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             eEecCCCcEEEEEEecCccCCCce-EEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence            3678999999999998765  344 999983  221   11 00           01122222      34899999999


Q ss_pred             CCCeEEEEEEEcCCCC--CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CC--CceeEE
Q psy3823         185 HSGGLYACSAINSQGE--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQ--AQYFTW  259 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~--~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~~~~W  259 (365)
                      .|+|.|.|.+.+..+.  .....+.|.|...      ...+|.+.... . ..+..|+.++|.|.+.+. |.  +. +.|
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~------~~~~P~v~~~~-~-~~~~~g~~v~L~C~~~g~~P~~~~~-v~W  159 (220)
T 2fbj_H           89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAE------SARNPTIYPLT-L-PPALSSDPVIIGCLIHDYFPSGTMN-VTW  159 (220)
T ss_dssp             GGCEEEEEEEEETTTEEEEECCCEEEEECSS------CCBCCEEEEEC-C-CSSSCCSSEEEEEEEEEEBSCCCEE-EEE
T ss_pred             hhCEEEEEEEeccccccceecCCEEEEecCC------CCCCCEEEEee-c-ccccCCCcEEEEEEEEeEECCCcEE-EEE
Confidence            9999999999987542  1223456777610      00234443322 1 125689999999999887 65  45 999


Q ss_pred             EeCCCCCCCCCCceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823         260 AFNNSDTAPRPLTSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQGSQR  309 (365)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~~~  309 (365)
                      ++++..............++..   +.|.|.....+|.|.|+|.|.|..|...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          160 GKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             SCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            9987643110011111233332   3589998888999999999999998865

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.69  E-value=1.1e-15  Score=128.91  Aligned_cols=173  Identities=13%  Similarity=0.172  Sum_probs=107.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc-CCC----------------CCCceeEe--cCCeEEEEEEccC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG-TAP----------------RPLTSYSI--QDGSTSVARYTPT   77 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~-~l~----------------~~~~~~~~--~~~~~~~l~i~~~   77 (365)
                      +....+.+|++++|.|...+.+  .. .+.|||.... ...                ...+....  .......|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSFSDY-YWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSC-CEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEeCCCcEEEEEEEccccCCCc-eEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence            3446789999999999965554  45 8999986421 010                01111111  1234558999999


Q ss_pred             CCCCCeEEEEEEEeCCC--C----CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecC-CcEEEEEEEEec-CC
Q psy3823          78 SELEYGTLLCWARNEQG--N----QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEG-VDIYFDCHIQAN-PP  149 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~--~----~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g-~~v~l~C~~~~~-p~  149 (365)
                      +.+|+|.|.|.+.+..+  .    ......|.|...     +..+|.+......    ..+.+| +.++|.|.+.+. |.
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~-----~~~~P~v~~~~p~----~~~~~g~~~v~L~C~~~g~~P~  156 (232)
T 1dn0_B           86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSG-----SASAPTLFPLVSC----ENSPSDTSSVAVGCLAQDFLPD  156 (232)
T ss_dssp             CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSS-----CCBCCEEEEEECC----------CCSEEEEEEEEEEBSS
T ss_pred             CcccCEEEEEEEecCCcCCchhhhcccceEEEEccC-----CCCCCceEEeccc----cccCCCCCcEEEEEEEEEEeCC
Confidence            99999999999984221  1    114467888310     1234655433211    134578 999999999985 66


Q ss_pred             CCeeEEEe-CCeEEeeCC---C---CceEEeeceEEEeeecC--CCCeEEEEEEEcCCCCC
Q psy3823         150 YKKLIWTH-NGITISNNA---S---AGRIITNQTLVLQSVTR--HSGGLYACSAINSQGEG  201 (365)
Q Consensus       150 ~~~i~W~~-~~~~l~~~~---~---~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~  201 (365)
                      +..+.|++ ||..+....   .   .+.....+.|.|.....  +|.|.|+|.+.|..+..
T Consensus       157 p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~  217 (232)
T 1dn0_B          157 SITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK  217 (232)
T ss_dssp             CCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             CeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCc
Confidence            64699999 998874300   0   01122245688887776  78999999999988753

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.69  E-value=3.3e-16  Score=136.83  Aligned_cols=188  Identities=13%  Similarity=0.124  Sum_probs=112.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-CC-----------------CCCceeEe--cCCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-AP-----------------RPLTSYSI--QDGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l~-----------------~~~~~~~~--~~~~~~~l~i~~   76 (365)
                      +....+.+|++++|.|...+.|  .+ .+.|+|..... +.                 ...+....  .......|.|.+
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTFTSY-VMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             CCcEEecCCCCEEEEEeccCCccccc-EEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            3467789999999999976666  46 89999964210 10                 00111111  122346899999


Q ss_pred             CCCCCCeEEEEEEEeCC-CCC----cccEEEEEEec-----cccCC-CC-CCCeEEEEcCCccCccceecCCcEEEEEEE
Q psy3823          77 TSELEYGTLLCWARNEQ-GNQ----RTPCTFHVVKA-----GECEH-PV-DKPSVQIKLGRNLNASVLNEGVDIYFDCHI  144 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~-~~~----~~~~~l~V~~~-----~~~~~-~~-~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~  144 (365)
                      ++.+|+|.|.|.+.+.. +..    .....|.|..+     +.... +. .++.+...+    ....+.+|++++|.|.+
T Consensus       108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p----~~~~v~~G~~v~L~C~~  183 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSP----SSLAVSAGEKVTMSCKS  183 (291)
T ss_dssp             CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSC----SEEEEETTSCEEEEEEE
T ss_pred             CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCC----CEEEEcCCCcEEEEEEc
Confidence            99999999999999864 211    13457777320     00000 00 022222111    23467899999999999


Q ss_pred             EecCCC-----CeeEEEeC--CeE---EeeCC-------CCceEE--e--eceEEEeeecCCCCeEEEEEEEcCCCCCCc
Q psy3823         145 QANPPY-----KKLIWTHN--GIT---ISNNA-------SAGRII--T--NQTLVLQSVTRHSGGLYACSAINSQGEGGS  203 (365)
Q Consensus       145 ~~~p~~-----~~i~W~~~--~~~---l~~~~-------~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s  203 (365)
                      .+.+.+     ..+.|+++  +..   +....       ..+...  .  ..+|.|.+++.+|+|.|+|.+.+.......
T Consensus       184 ~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg  263 (291)
T 2gki_A          184 SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFG  263 (291)
T ss_dssp             SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEc
Confidence            887655     14999985  221   11100       112211  1  347999999999999999999985432222


Q ss_pred             ccEEEEEe
Q psy3823         204 TPFDLNIN  211 (365)
Q Consensus       204 ~~~~l~v~  211 (365)
                      .-..|.|.
T Consensus       264 ~gt~l~v~  271 (291)
T 2gki_A          264 SGTKLEIK  271 (291)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEEEE
Confidence            23445555

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.69  E-value=4.6e-16  Score=130.65  Aligned_cols=170  Identities=12%  Similarity=0.204  Sum_probs=107.9

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--CeEEe----e-----------CCCCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GITIS----N-----------NASAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~l~----~-----------~~~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++++|.|.+.+.+  .+. +.|+++  +..+.    .           ....+....      +.+|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (225)
T 1op3_H           10 GLVKAGGSLILSCGVSNFRISAHT-MNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (225)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSC-EEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eEecCCCCEEEEEEecCcccCCce-EEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            3578999999999998765  455 999984  22111    0           011122222      35899999999


Q ss_pred             CCCeEEEEEEEcCCC-----C--CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCce
Q psy3823         185 HSGGLYACSAINSQG-----E--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQY  256 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~-----~--~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~  256 (365)
                      .|+|.|.|.+.+..+     .  .....+.|.|...      ...+|.+........ +..|+.++|.|.+.+. |.+..
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~------~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~~  161 (225)
T 1op3_H           89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPA------STKGPSVFPLAPSSK-STSGGTAALGCLVKDYFPEPVT  161 (225)
T ss_dssp             GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESC------SCBCCEEEEECCCTT-CCCCCEEEEEEEEEEEBSSCCE
T ss_pred             hhCEEEEEEEecCCCccccccceeecCCEEEecccC------CCcCCeEEEeccccc-ccCCCcEEEEEEEEeEECCCeE
Confidence            999999999998764     1  1123457777610      002344432211111 5679999999999986 66623


Q ss_pred             eEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         257 FTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       257 ~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      +.|++++..............++.   .+.|.|..+..+| |.|+|.|.|..+..
T Consensus       162 v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  215 (225)
T 1op3_H          162 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  215 (225)
T ss_dssp             EECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred             EEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence            999998764211100111122332   3468999988888 99999999976654

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.69  E-value=1.1e-15  Score=129.35  Aligned_cols=173  Identities=16%  Similarity=0.187  Sum_probs=108.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CC---------------CCCceeEe-cCCeEEEEEEccCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-AP---------------RPLTSYSI-QDGSTSVARYTPTSELE   81 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~---------------~~~~~~~~-~~~~~~~l~i~~~~~~d   81 (365)
                      +..+.+.+|+.++|.|... .+.+ .+.|+|++... ..               ...+.... .......|.|.+++.+|
T Consensus         6 p~~v~v~~G~~v~L~C~~~-~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D   83 (238)
T 1bec_A            6 PRNKVAVTGGKVTLSCQQT-NNHN-NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQ   83 (238)
T ss_dssp             CSEEEEETTCCEEEEEEES-SCCS-EEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGG
T ss_pred             CCeeEEeCCCcEEEEEEeC-CCCc-eEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCccc
Confidence            4567789999999999974 4566 99999975210 10               01111111 12345689999999999


Q ss_pred             CeEEEEEEEeCCC---CC--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEE
Q psy3823          82 YGTLLCWARNEQG---NQ--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIW  155 (365)
Q Consensus        82 ~G~Y~C~a~~~~~---~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W  155 (365)
                      +|.|.|.+.+..+   ..  .....|.|.....   ...+|.+.+....   ...+.+|+.++|.|.+.+. |.+..+.|
T Consensus        84 ~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~~~P~v~~~~~~---~~~~~~g~~~~L~C~~~g~~P~~~~v~W  157 (238)
T 1bec_A           84 TSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLR---QVTPPKVSLFEPS---KAEIANKQKATLVCLARGFFPDHVELSW  157 (238)
T ss_dssp             CEEEEEEEESCTTCGGGCEECCCEEEEEESCGG---GCBCCEEEEECCC---STTCSSSCSCSEEEEEEEEBSCCEEEEE
T ss_pred             CEEEEEEEecCCCCccccccCCCEEEEEeccCC---CCCCCceEEECCC---hHHcccCCceEEEEEEeeEeCCCcEEEE
Confidence            9999999998642   11  1345677732100   0136766655332   2346689999999999986 55545999


Q ss_pred             EeCCeEEeeCCC---CceEEeece------EEEeeecCC-CCeEEEEEEEcCCC
Q psy3823         156 THNGITISNNAS---AGRIITNQT------LVLQSVTRH-SGGLYACSAINSQG  199 (365)
Q Consensus       156 ~~~~~~l~~~~~---~~~~~~~~~------l~i~~~~~~-d~G~Y~C~~~~~~~  199 (365)
                      ++||..+.....   ......+++      |.|...... +.|.|+|.+.|...
T Consensus       158 ~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          158 WVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             EETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             EECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            999998854211   011122233      334433333 46889999999753

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.69  E-value=5.5e-16  Score=132.76  Aligned_cols=171  Identities=9%  Similarity=0.064  Sum_probs=105.2

Q ss_pred             ceecCCcEEEEEEEEec--CCCCeeEEEeC--CeE---EeeC-------CCCceEEe----eceEEEeeecCCCCeEEEE
Q psy3823         131 VLNEGVDIYFDCHIQAN--PPYKKLIWTHN--GIT---ISNN-------ASAGRIIT----NQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~--p~~~~i~W~~~--~~~---l~~~-------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C  192 (365)
                      .+.+|++|+|.|.+.+.  +.+. +.|+++  +..   +...       ...+....    ..+|.|.+++.+|+|.|.|
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C   91 (256)
T 3ux9_B           13 SGAPGQRVTISCSGSSSNIGSNY-VSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYYC   91 (256)
T ss_dssp             EECTTCCEEEEEECCTTTTTTSC-CEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEcCCCcEEEEEecCCCCCCCce-EEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEEE
Confidence            57899999999999875  5555 999983  211   1100       01112211    3379999999999999999


Q ss_pred             EEEcCCCC--CCcccEEEEEeeeeeccc-----------ccCCCCceecCccceeeeecCceEEEEEEEeeeC--CCcee
Q psy3823         193 SAINSQGE--GGSTPFDLNINKMVNLIF-----------NSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANP--QAQYF  257 (365)
Q Consensus       193 ~~~~~~~~--~~s~~~~l~v~~~~~~~~-----------~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~  257 (365)
                      .+.+..+.  .......|.|..+.....           .....+.+... ... .+.+|+.++|.|.+.+.+  .+. +
T Consensus        92 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~G~~v~L~C~~~~~~~~~~~-v  168 (256)
T 3ux9_B           92 QVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVES-GGG-LVQPGGSLRLSCAASGFTFSSYA-M  168 (256)
T ss_dssp             EEEETTTTEEEECCCEEEEEC----------------------CCEEEEE-CCE-EECTTCCEEEEEEEESSCGGGSE-E
T ss_pred             EEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcC-CCe-EEcCCCeEEEEEEEeCCcccccE-E
Confidence            99986542  222345677762100000           00001122222 222 278999999999998866  565 9


Q ss_pred             EEEeCCCCCCCC------------------CCceeEee--CCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         258 TWAFNNSDTAPR------------------PLTSYSIQ--DGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       258 ~W~~~~~~~~~~------------------~~~~~~~~--~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      .|++++......                  ..+.....  ......|.|.+++.+|+|.|+|.|.|..
T Consensus       169 ~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          169 SWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            999864221110                  01222221  2446679999999999999999999963

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.69  E-value=2.4e-16  Score=131.26  Aligned_cols=172  Identities=19%  Similarity=0.203  Sum_probs=119.8

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC--ceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      ..++|.+.  .+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +....  ............|.|.+++.+|.|.|
T Consensus        16 ~~~~P~~~--~p~~~~~~~G~~v~l~C~~~g~p~p-~i~W~~~g~~-l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   91 (215)
T 3mtr_A           16 HMYAPKLQ--GPVAVYTWEGNQVNITCEVFAYPSA-TISWFRDGQL-LPSSNYSNIKIYNTPSASYLEVTPDSENDFGNY   91 (215)
T ss_dssp             CCEEEEEE--CCSEEEECTTCCEEEEEEEEEESCC-EEEEEETTEE-SSCSSSCSEEEEEETTEEEEEECCCSGGGCEEE
T ss_pred             eecCCccc--CCceEEEECCCCEEEEEEEeecCCC-EEEEEECCeE-CCCCCCccEEEecCCCeeEEEEecCChhhCeEE
Confidence            34567663  3444778999999999998899999 9999999988 66543  22233334456899999999999999


Q ss_pred             EEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe---c-CCC-CeeEEEeCCe
Q psy3823          86 LCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA---N-PPY-KKLIWTHNGI  160 (365)
Q Consensus        86 ~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~---~-p~~-~~i~W~~~~~  160 (365)
                      +|.|.|..|.....+.|.|         ..+|......      .....+..+.|.|....   . |.. ..+.|.+++.
T Consensus        92 ~C~a~n~~g~~~~~~~l~v---------~~~P~~p~~~------~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~  156 (215)
T 3mtr_A           92 NCTAVNRIGQESLEFILVQ---------ADTPSSPSID------QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE  156 (215)
T ss_dssp             EEEEECSSCEEEEEEEEEE---------CCCCCCCEEE------EEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTC
T ss_pred             EEEEEECCCceEEEEEEEE---------CCCCCCCcce------EEEEecceEEEEEecCCccCCCceEEEEEEEEECCC
Confidence            9999999998888888888         3333211100      01234577899987442   1 211 1266777664


Q ss_pred             EEeeCCCCceEE------eeceEEEeeecCCCCeEEEEEEEcCCCCCC
Q psy3823         161 TISNNASAGRII------TNQTLVLQSVTRHSGGLYACSAINSQGEGG  202 (365)
Q Consensus       161 ~l~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~  202 (365)
                      ....    ....      ....+.|.++...+.|.|+|.|.|..|...
T Consensus       157 ~~w~----~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~  200 (215)
T 3mtr_A          157 EVWH----SKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGE  200 (215)
T ss_dssp             CCCE----EEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCC
T ss_pred             Cccc----ccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccC
Confidence            3211    0111      126899999999999999999999998654

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.68  E-value=1.1e-15  Score=133.61  Aligned_cols=173  Identities=14%  Similarity=0.210  Sum_probs=107.3

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeCC--eE---Eee--------------CCCCceEEe----eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHNG--IT---ISN--------------NASAGRIIT----NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~~--~~---l~~--------------~~~~~~~~~----~~~l~i~~~~~  184 (365)
                      ..+.+|++++|.|.+.+.+  .+. +.|+++.  ..   +..              ..+......    ..+|.|.+++.
T Consensus        32 ~~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  110 (291)
T 2gki_A           32 ELVKPGASVKMSCKASGYTFTSYV-MHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTS  110 (291)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSC-EEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCG
T ss_pred             EEecCCCCEEEEEeccCCcccccE-EEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCH
Confidence            4678999999999998765  344 9999842  11   110              011111211    35799999999


Q ss_pred             CCCeEEEEEEEcCC-CCC---CcccEEEEEeeee-----eccc-ccCCCCceecCccceeeeecCceEEEEEEEeeeCCC
Q psy3823         185 HSGGLYACSAINSQ-GEG---GSTPFDLNINKMV-----NLIF-NSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA  254 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~-~~~---~s~~~~l~v~~~~-----~~~~-~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  254 (365)
                      +|+|.|.|.+.+.. +..   ......|.|..+.     .... .....+.+...+. ...+.+|+.++|.|.+.+.|.+
T Consensus       111 ~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~-~~~v~~G~~v~L~C~~~~~~~~  189 (291)
T 2gki_A          111 EDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPS-SLAVSAGEKVTMSCKSSQSLFN  189 (291)
T ss_dssp             GGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCS-EEEEETTSCEEEEEEESSCCEE
T ss_pred             HHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCC-EEEEcCCCcEEEEEEcCCcccc
Confidence            99999999999874 211   1123467776100     0000 0000222332222 2348899999999999887765


Q ss_pred             ------ceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         255 ------QYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       255 ------~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                            . +.|++++......             ..++....++....|.|.+++.+|+|.|.|.|.|..
T Consensus       190 ~~~~~~~-v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          190 SRTRKNY-LAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             TTTTEEC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cccccee-EEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence                  6 9999964211110             112222234456689999999999999999999854

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.68  E-value=1.1e-15  Score=131.17  Aligned_cols=174  Identities=9%  Similarity=0.109  Sum_probs=101.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CC-----C--C-----------Ccee-EecCCeEEEEEEccCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-AP-----R--P-----------LTSY-SIQDGSTSVARYTPTS   78 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~-----~--~-----------~~~~-~~~~~~~~~l~i~~~~   78 (365)
                      +..+.+.+|++++|.|...+.|.+ .+.|+|..... ..     .  .           .... .........|.|.+++
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   87 (259)
T 3omz_A            9 TKSVIRQTGSSAEITCDLAEGSTG-YIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLI   87 (259)
T ss_dssp             --CEEEETTCCEEEECCC-----C-EEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCC
T ss_pred             CceeEecCCCcEEEEEEEccCCCc-EEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCC
Confidence            456778999999999998778888 99999942110 10     0  0           0000 0112233479999999


Q ss_pred             CCCCeEEEEEEEeCCCC---CcccEEEEEEeccccCC--------CCCCCeEEEEcCCccCccceecCCcEEEEEEEEec
Q psy3823          79 ELEYGTLLCWARNEQGN---QRTPCTFHVVKAGECEH--------PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN  147 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~~~---~~~~~~l~V~~~~~~~~--------~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  147 (365)
                      .+|+|.|.|.+.+..+.   ......|.|........        ....|.+...+    ....+.+|++++|.|.+.+.
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p----~~~~v~~G~~v~L~C~~~~~  163 (259)
T 3omz_A           88 ENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQ----SSVSMPVRKAVTLNCLYETS  163 (259)
T ss_dssp             GGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCC----CCEEEETTCCEEECCEEECC
T ss_pred             cccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeC----CEEEEcCCCCEEEEEECCCc
Confidence            99999999999987652   22556777742110000        00022322222    33568899999999988875


Q ss_pred             CCCCeeEEEeCC--eEEee----CC------CCceEEe------eceEEEeeecCCCCeEEEEEEEcC
Q psy3823         148 PPYKKLIWTHNG--ITISN----NA------SAGRIIT------NQTLVLQSVTRHSGGLYACSAINS  197 (365)
Q Consensus       148 p~~~~i~W~~~~--~~l~~----~~------~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~  197 (365)
                      .+...+.|+++.  ..+..    ..      ..+....      ...|.|.+++.+|+|.|.|.+.+.
T Consensus       164 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          164 WWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             CSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             cCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            334449999832  21110    00      0111111      346999999999999999999853

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.67  E-value=4e-16  Score=129.22  Aligned_cols=164  Identities=15%  Similarity=0.187  Sum_probs=100.0

Q ss_pred             ecCCcEEEEEEeCCCC----CcceEEEEeCCCcCCCCCCc--eeEecCCeE---EEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          25 LRNEQVLVSCTVDANP----QAQYFTWAFNNSGTAPRPLT--SYSIQDGST---SVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        25 ~~G~~~~l~C~~~~~p----~~~~v~W~~~~~~~l~~~~~--~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      .+|++++|.|.+.+.+    .. .++|+|++.. +.....  .....++..   +.|.|.....+|+|.|+|.|.+..+.
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~-~v~W~k~~~~-~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~   93 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEV-KFNWYVDGVE-VHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCC-EEEEEETTEE-ECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             ecCCceEEEEEEecccCCCCCe-EEEEEECCcc-ccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCC
Confidence            6899999999965654    34 9999999976 543211  011122321   23444444455699999999987765


Q ss_pred             CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEEeCCeEEeeCCCCce-EEe
Q psy3823          96 QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWTHNGITISNNASAGR-IIT  173 (365)
Q Consensus        96 ~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~~~~~-~~~  173 (365)
                      ......+... .    ....+|.+.+.+...    ....|+.++|.|.+.|. |++..+.|++||..+........ ...
T Consensus        94 ~~~~~~v~~~-~----~~~~~P~v~~~~~~~----~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~  164 (207)
T 1l6x_A           94 APIEKTISKA-K----GQPREPQVYTLPPSR----DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDS  164 (207)
T ss_dssp             SCEEEEECCC-C----SCCBCCEEEEECCCG----GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECT
T ss_pred             cceEEEeccC-C----CCCcCCEEEEECCCh----HHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECC
Confidence            4322223110 0    014577776654331    12356669999999985 54446999999998753211111 111


Q ss_pred             e------ceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         174 N------QTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       174 ~------~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      +      ..|.+.....+|.|.|+|.|.|...
T Consensus       165 ~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          165 DGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             TSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence            2      3345555555789999999999764

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.67  E-value=8e-16  Score=131.56  Aligned_cols=172  Identities=15%  Similarity=0.185  Sum_probs=110.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCC--------CCC----------ceeEecCCeEEEEEEccCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAP--------RPL----------TSYSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~--------~~~----------~~~~~~~~~~~~l~i~~~~~~   80 (365)
                      +..+.+.+|+.++|.|...+.+.+ .+.|||.... ..        ...          +.....+.... |.|.+++.+
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~   84 (253)
T 3to4_D            8 PRWRLVPRGQAVNLRCILKNSQYP-WMSWYQQDLQ-KQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMS   84 (253)
T ss_dssp             CSEEEEESSCCEEEEEECSCTTCC-CEEEEEEETT-CCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCS
T ss_pred             CCeEEEeCCCcEEEEEEeCCCCcc-eEEEEEECCC-CCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChh
Confidence            346778999999999997677777 9999984221 00        000          11111111111 999999999


Q ss_pred             CCeEEEEEEEeCCCC---C---cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCee
Q psy3823          81 EYGTLLCWARNEQGN---Q---RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKL  153 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~---~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i  153 (365)
                      |+|.|.|.+.+..+.   .   .....|.|.....   ...+|.+.+....   ...+.+|+.++|.|.+.+ .|++..+
T Consensus        85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~---~~~~P~v~~~~~~---~~~~~~g~~~~L~C~~~g~~P~~i~v  158 (253)
T 3to4_D           85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLK---NVFPPEVAVFEPS---EAEISHTQKATLVCLATGFYPDHVEL  158 (253)
T ss_dssp             SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCST---TCBCCEEEEEECC---HHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             hCeEEEEEEecCCCCcccceEECCCEEEEEecCCC---CCCCCeEEEeCCC---hhhcccCCceEEEEEEceEECCcEEE
Confidence            999999999876441   1   1445677632100   1246766654322   123446789999999998 5555359


Q ss_pred             EEEeCCeEEeeCC-------------CCceEEeeceEEEeeecCCC-CeEEEEEEEcCCC
Q psy3823         154 IWTHNGITISNNA-------------SAGRIITNQTLVLQSVTRHS-GGLYACSAINSQG  199 (365)
Q Consensus       154 ~W~~~~~~l~~~~-------------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~  199 (365)
                      .|++||..+....             ..+.......|.|.....+| .|.|+|.+.|...
T Consensus       159 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l  218 (253)
T 3to4_D          159 SWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (253)
T ss_dssp             EEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             EEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence            9999999885311             11122223467777777777 7899999998754

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.67  E-value=2.1e-15  Score=130.95  Aligned_cols=184  Identities=13%  Similarity=0.145  Sum_probs=110.3

Q ss_pred             cceecCCcEEEEEEEEec--CCCCeeEEEeCC--eEE----eeC-C----------CCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQAN--PPYKKLIWTHNG--ITI----SNN-A----------SAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~--p~~~~i~W~~~~--~~l----~~~-~----------~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++|+|.|.+.+.  +.+. +.|++..  ..+    ... .          ..+....      ..+|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (280)
T 3fku_X           10 EVKKPGSSVKVSCTSSEVTFSSFA-ISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRS   88 (280)
T ss_dssp             CEECTTCCEEEEEEECCSCCTTSC-EEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCS
T ss_pred             EEECCCCcEEEEEEeeccCCCCeE-EEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence            467899999999999874  3344 9999732  111    000 0          0111111      13799999999


Q ss_pred             CCCeEEEEEEEcC--------CCCCCcccEEEEEee-eee----cccccCCCCceecCccceeeeecCceEEEEEEEee-
Q psy3823         185 HSGGLYACSAINS--------QGEGGSTPFDLNINK-MVN----LIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-  250 (365)
Q Consensus       185 ~d~G~Y~C~~~~~--------~~~~~s~~~~l~v~~-~~~----~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-  250 (365)
                      .|+|.|.|.+.+.        ..........|.|.. +..    .......++.+...+.  ..+.+|+.++|.|.+.+ 
T Consensus        89 ~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~--~~v~~G~~v~L~C~~~~~  166 (280)
T 3fku_X           89 EDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS--VSKGLRQTATLTCTGNSN  166 (280)
T ss_dssp             TTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE--EEECTTCCEEEEEECCCC
T ss_pred             hhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc--EEEecCCCEEEEEEecCC
Confidence            9999999999986        111122344566651 000    0000001333333333  44889999999999987 


Q ss_pred             eC-CCceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc---ceecEE
Q psy3823         251 NP-QAQYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS---QRTPCT  313 (365)
Q Consensus       251 ~p-~~~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~---~~~~~~  313 (365)
                      .+ .+. +.|++........             ..++....++....|.|.+++.+|+|.|.|.+.|..+.   ......
T Consensus       167 ~~~~~~-v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~t~  245 (280)
T 3fku_X          167 NVGNQG-AAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTK  245 (280)
T ss_dssp             CCCTTC-CEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBCCCE
T ss_pred             CCCCce-EEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECCCEE
Confidence            44 355 9998743211110             12233334455677999999999999999999997632   223345


Q ss_pred             EEEE
Q psy3823         314 FHVV  317 (365)
Q Consensus       314 l~v~  317 (365)
                      |.|.
T Consensus       246 l~V~  249 (280)
T 3fku_X          246 LTVL  249 (280)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            5554

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.67  E-value=1.2e-15  Score=131.07  Aligned_cols=170  Identities=14%  Similarity=0.144  Sum_probs=109.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc-CCC--------C---------CCceeEec--CCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG-TAP--------R---------PLTSYSIQ--DGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~-~l~--------~---------~~~~~~~~--~~~~~~l~i~~   76 (365)
                      +....+.+|++++|.|...+.|  .+ .+.|+|+... .+.        .         ..+.....  ......|.|.+
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSY-WMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCc-eEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            4566789999999999976666  45 9999997421 010        0         01111111  12345899999


Q ss_pred             CCCCCCeEEEEEEEeCCCCC---cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCe
Q psy3823          77 TSELEYGTLLCWARNEQGNQ---RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKK  152 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~~~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~  152 (365)
                      ++.+|+|.|.|.+.+..+..   ...+.|.|...     +..+|.+.+....    ..+.+|+.++|.|.+.+. |.+..
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~-----~~~~P~v~~~~p~----~~v~~g~~v~L~C~~~g~~P~~i~  162 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSA-----KTTAPSVYPLAPV----CGDTTGSSVTLGCLVKGYFPEPVT  162 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSS-----CCBCCEEEEECCC----CC--CCSEEEEEEEEEEEBSSCCE
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEccC-----CCCCCeEEEeCCC----ccccCCCcEEEEEEEEeEeCCCCE
Confidence            99999999999999854211   14467887310     1235665543322    235689999999999975 66646


Q ss_pred             eEEEeCCeEEeeCCCC-----ceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         153 LIWTHNGITISNNASA-----GRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       153 i~W~~~~~~l~~~~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      +.|++++..+......     ........|.|.....+| |.|+|.+.|...
T Consensus       163 v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~  213 (261)
T 2xqy_G          163 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS  213 (261)
T ss_dssp             EEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             EEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCC
Confidence            9999988754211111     112224578888888778 999999998654

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.66  E-value=7.8e-16  Score=133.69  Aligned_cols=174  Identities=13%  Similarity=0.080  Sum_probs=105.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCC--CCcceEEEEeCCCcC-CC-------CC----------CceeEe--cCCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGT-AP-------RP----------LTSYSI--QDGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~-l~-------~~----------~~~~~~--~~~~~~~l~i~~   76 (365)
                      +....+.+|++++|.|...+.  +.+ .+.|+|..... ..       ..          .+....  .......|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSF-AISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS   85 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTS-CEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCe-EEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            456778999999999996554  456 99999854210 10       00          011111  234456899999


Q ss_pred             CCCCCCeEEEEEEEeCC-------CC--CcccEEEEEEe-ccc---cC--CCCCCCeEEEEcCCccCccceecCCcEEEE
Q psy3823          77 TSELEYGTLLCWARNEQ-------GN--QRTPCTFHVVK-AGE---CE--HPVDKPSVQIKLGRNLNASVLNEGVDIYFD  141 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~-------~~--~~~~~~l~V~~-~~~---~~--~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~  141 (365)
                      ++.+|+|.|.|.+.+..       ..  ......|.|.. ...   ..  ....+|.+...     +...+.+|++|+|.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~-----p~~~v~~G~~v~L~  160 (280)
T 3fku_X           86 LRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQP-----PSVSKGLRQTATLT  160 (280)
T ss_dssp             CCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCC-----SEEEECTTCCEEEE
T ss_pred             CChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeC-----CcEEEecCCCEEEE
Confidence            99999999999998761       11  11456677732 000   00  00012222211     11467899999999


Q ss_pred             EEEEe-cCCCCeeEEEe--CCeEEee---C-------CCCceEEe----eceEEEeeecCCCCeEEEEEEEcCC
Q psy3823         142 CHIQA-NPPYKKLIWTH--NGITISN---N-------ASAGRIIT----NQTLVLQSVTRHSGGLYACSAINSQ  198 (365)
Q Consensus       142 C~~~~-~p~~~~i~W~~--~~~~l~~---~-------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~  198 (365)
                      |.+.+ .+....+.|++  .+..+..   .       ...+....    ..+|.|.+++.+|+|.|.|.+.+..
T Consensus       161 C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          161 CTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             EECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            99987 44323499997  2322210   0       00111111    3359999999999999999999876

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.66  E-value=2.5e-15  Score=125.19  Aligned_cols=169  Identities=11%  Similarity=0.127  Sum_probs=105.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-CC----------------CCCceeEe--cCCeEEEEEEccC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-AP----------------RPLTSYSI--QDGSTSVARYTPT   77 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l~----------------~~~~~~~~--~~~~~~~l~i~~~   77 (365)
                      +....+.+|++++|.|...+.+  .+ .+.|+|+.... ..                ...+....  .......|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTN-GVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSC-CEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCC-eEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            3446789999999999976654  45 89999864210 10                00111111  1233458999999


Q ss_pred             CCCCCeEEEEEEEeCCCC---CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCee
Q psy3823          78 SELEYGTLLCWARNEQGN---QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKL  153 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i  153 (365)
                      +.+|+|.|.|.+.+..+.   ....+.|.|..     .+..+|.+.+....    ..+.+|+.++|.|.+.+. |.+..+
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~-----~~~~~P~i~~~~~~----~~~~~g~~v~L~C~~~g~~P~p~~v  156 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSS-----AQTTAPSVYPLAPG----CGDTTSSTVTLGCLVKGYFPEPVTV  156 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEECS-----SCCBCCCEEEECCC----SSCCCCSSEEEEEEEEEEBSSCCEE
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEecC-----CCCCCCeEEeccCC----hhhccCCcEEEEEEEeeeEcCCcEE
Confidence            999999999999876422   11446788831     01235665544322    235689999999999986 766459


Q ss_pred             EEEeCCeEEeeCCCCceEE-----eeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         154 IWTHNGITISNNASAGRII-----TNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       154 ~W~~~~~~l~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .|++++..+..........     ....|.  ....++ |.|+|.+.|..+.
T Consensus       157 ~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~  205 (215)
T 1c5d_H          157 TWNSGALSSDVHTFPAVLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASS  205 (215)
T ss_dssp             EEGGGTTCCSCCBCCCEEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGT
T ss_pred             EEccCCccCceEecCcccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCC
Confidence            9999886543211111111     112233  333356 9999999998764

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=2.4e-15  Score=127.75  Aligned_cols=176  Identities=13%  Similarity=0.079  Sum_probs=107.9

Q ss_pred             CceEEEEecCCcEEEEEEeCCC--CCcceEEEEeCCCc-CCC-----------------CCCceeEe--cCCeEEEEEEc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSG-TAP-----------------RPLTSYSI--QDGSTSVARYT   75 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~-~l~-----------------~~~~~~~~--~~~~~~~l~i~   75 (365)
                      .+..+.+.+|++++|.|...+.  +.. .+.|+|.... .+.                 ...+....  .......|.|.
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (242)
T 1hxm_B            7 PQISSTKTLSKTARLECVVSGITISAT-SVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIH   85 (242)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTS-CEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEEC
T ss_pred             CCceEEecCCCcEEEEEEeCCccccCc-eEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEEC
Confidence            3566788999999999996543  556 9999995421 010                 01111111  11135689999


Q ss_pred             cCCCCCCeEEEEEEEeCCC-C------CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-
Q psy3823          76 PTSELEYGTLLCWARNEQG-N------QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-  147 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~~~~-~------~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-  147 (365)
                      +++.+|+|.|.|.+.+... .      ......|.|.......  ..+|.+.+...   ....+.+|+.++|.|.+.+. 
T Consensus        86 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~--~~~p~~~v~~p---~~~~~~~g~~v~L~C~~~g~~  160 (242)
T 1hxm_B           86 NVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDA--DVSPKPTIFLP---SIAETKLQKAGTYLCLLEKFF  160 (242)
T ss_dssp             SCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCS--CCSCBCCCCCC---CGGGGGSSSCEEEEEEEEEES
T ss_pred             CCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCC--CcCCCceEECC---ChhhcccCCCceEEEEEeeEE
Confidence            9999999999999987631 1      1135677874211000  01233222211   12345679999999999986 


Q ss_pred             CCCCeeEEEeCCe-EEeeCC-C-----CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         148 PPYKKLIWTHNGI-TISNNA-S-----AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       148 p~~~~i~W~~~~~-~l~~~~-~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      |.+..+.|++++. .+.... .     .+.......|.|..... + |.|+|.+.|..+..
T Consensus       161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~  219 (242)
T 1hxm_B          161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKN  219 (242)
T ss_dssp             SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGG
T ss_pred             CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCC
Confidence            5444599999886 553211 0     11111234678877664 4 99999999988754

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.66  E-value=3.3e-15  Score=127.65  Aligned_cols=176  Identities=13%  Similarity=0.114  Sum_probs=111.4

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C-------C--------CCCceeEe-cCCeEEEEEEccCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A-------P--------RPLTSYSI-QDGSTSVARYTPTSEL   80 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l-------~--------~~~~~~~~-~~~~~~~l~i~~~~~~   80 (365)
                      .+..+.+.+|++++|.|... .+.+ .+.|+|..... .       .        ...+.... .......|.|.+++.+
T Consensus         9 ~p~~v~v~~G~~v~L~C~~~-~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~   86 (252)
T 1oga_E            9 SPKYLFRKEGQNVTLSCEQN-LNHD-AMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKN   86 (252)
T ss_dssp             SCSEEEEETTCCEEECCEEC-SCCS-EEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSC
T ss_pred             cCCeEEEcCCCcEEEEEEeC-CCCC-EEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChh
Confidence            35667899999999999974 4566 99999964210 0       0        00111111 1123347999999999


Q ss_pred             CCeEEEEEEEeCCCC---CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEE
Q psy3823          81 EYGTLLCWARNEQGN---QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWT  156 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~  156 (365)
                      |+|.|.|.+.+....   ......|.|...-.   ...+|.+.+....   ...+.+|+.++|.|.+.+. |.+..+.|+
T Consensus        87 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~---~~~~P~v~~~~~~---~~~~~~g~~~~L~C~~~g~~P~~~~v~W~  160 (252)
T 1oga_E           87 PTAFYLCASSSRSSYEQYFGPGTRLTVTEDLK---NVFPPEVAVFEPS---EAEISHTQKATLVCLATGFYPDHVELSWW  160 (252)
T ss_dssp             CCEEEEEEEESSTTSCCEECCCEEEEEESCGG---GCBCCEEEEECCC---HHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             hCEEEEEEEecCCccceeECCCEEEEEecccC---CCCCCeEEEECCC---hhhhccCCceEEEEEEeeEcCCCcEEEEE
Confidence            999999999875211   11345677732100   0246776654321   1245579999999999985 555459999


Q ss_pred             eCCeEEeeCCC-------------CceEEeeceEEEeeecC-CCCeEEEEEEEcCCCCC
Q psy3823         157 HNGITISNNAS-------------AGRIITNQTLVLQSVTR-HSGGLYACSAINSQGEG  201 (365)
Q Consensus       157 ~~~~~l~~~~~-------------~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~  201 (365)
                      +||..+.....             .+.......|.|..... ++.|.|+|.+.|.....
T Consensus       161 ~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~  219 (252)
T 1oga_E          161 VNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  219 (252)
T ss_dssp             ETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            99988753211             11112234577776655 36789999999986543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.66  E-value=2.1e-16  Score=126.78  Aligned_cols=150  Identities=11%  Similarity=0.120  Sum_probs=102.7

Q ss_pred             ceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCC----------CCceEE--eeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823         131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNA----------SAGRII--TNQTLVLQSVTRHSGGLYACSAINSQ  198 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~----------~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~  198 (365)
                      .+.+|++|+|.|.+. .|.+. |.|++++..+....          ..+...  .+++|.|.+++..|+|.|.|.+.+..
T Consensus         6 ~~~~G~~VtL~c~~~-~~~~~-i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~   83 (171)
T 1ccz_A            6 YGVVYGNVTFHVPSN-VPLKE-VLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (171)
T ss_dssp             EEETTCCEEECCCCS-SCCSC-EEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEcCCCEEEcCCCC-CCcce-EEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCC
Confidence            567899999999884 35555 99999887553211          112222  35789999999999999999998877


Q ss_pred             CCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeC
Q psy3823         199 GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQD  278 (365)
Q Consensus       199 ~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~  278 (365)
                      +   ...+.|.|..+       ...|.+..        ... ...|.|.+.+.|.|. +.|+++|.....          
T Consensus        84 ~---~~~~~L~V~~~-------~~~p~i~~--------~~~-~~~L~C~~~~~p~p~-i~W~~~~~~l~~----------  133 (171)
T 1ccz_A           84 D---TMKFFLYVLEM-------VSKPMIYW--------ECS-NATLTCEVLEGTDVE-LKLYQGKEHLRS----------  133 (171)
T ss_dssp             S---CEEEEEEEECC-------CCCCEEEE--------ETT-TTEEEEECSSCSSCE-EEEEETTEEEEE----------
T ss_pred             C---cEEEEEEEECc-------CCCCEEEE--------ecC-CcEEEEEeCCCCCcE-EEEEECCEECcC----------
Confidence            6   46778888711       01233221        111 137999999888887 999998753211          


Q ss_pred             CCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         279 GSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       279 ~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      .....|.+.+  ..|.|.|+|.|.|..|..+....|
T Consensus       134 ~~~~~l~~~~--~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          134 LRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             ESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             CcceEEEEec--cCCCceEEEEEEcccCcccceeEE
Confidence            0111243433  678999999999999987765544

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.66  E-value=1.5e-15  Score=124.50  Aligned_cols=161  Identities=13%  Similarity=0.135  Sum_probs=110.7

Q ss_pred             cceecCCcEEEEEEEEecCCCC-eeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYK-KLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~-~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      ..+..|++++|.|.+ +.|.|. .|.|++.+..+   ...........|.|.+++.+|+|.|.|.+.+..+.. ++.+.|
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~~~~~l   91 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF-QHTVQL   91 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEecCCccEEEECccCcccCceEEEEEEeCCCce-EEEEEE
Confidence            468899999999999 887772 49999854333   111112235689999999999999999999987654 367899


Q ss_pred             EEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCC---ceeEEEeCCCCCCCCCC-ceeE------e-
Q psy3823         209 NINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQA---QYFTWAFNNSDTAPRPL-TSYS------I-  276 (365)
Q Consensus       209 ~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~---~~~~W~~~~~~~~~~~~-~~~~------~-  276 (365)
                      +|.          .+|........  ....|+.. |.|.+.+. |.+   ..+.|++++........ ....      . 
T Consensus        92 tV~----------~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~  158 (210)
T 1gsm_A           92 LVY----------AFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQ  158 (210)
T ss_dssp             EEE----------BCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCS
T ss_pred             EEE----------ecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceeccccccc
Confidence            998          77865443222  36678888 99999985 644   14999999875532211 1011      0 


Q ss_pred             --eCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         277 --QDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       277 --~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                        ....   .+.|.+.....+|.+.|+|.|.+..-..
T Consensus       159 ~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~  195 (210)
T 1gsm_A          159 GDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGL  195 (210)
T ss_dssp             SCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTE
T ss_pred             CCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCC
Confidence              1111   3456666777777899999999876443

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.66  E-value=8.2e-15  Score=122.78  Aligned_cols=174  Identities=16%  Similarity=0.276  Sum_probs=109.6

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--CeE---Eee-C-----------CCCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GIT---ISN-N-----------ASAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~---l~~-~-----------~~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++|+|.|.+.+.+  .+. +.|++.  +..   +.. .           ...+....      +.+|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (223)
T 1dee_B           10 GVVQPGKSLRLSCAASGFTFSGYG-MHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   88 (223)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSC-EEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEEcCCCcEEEEEEecCcccCCce-EEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence            4678999999999998765  244 999983  221   110 0           01122222      34799999999


Q ss_pred             CCCeEEEEEEEcCCCC-----CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeE
Q psy3823         185 HSGGLYACSAINSQGE-----GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFT  258 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~-----~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~  258 (365)
                      .|+|.|.|.+.+..+.     .....+.|.|..      ....+|.+....... .+..|+.++|.|.+.+. |.+..+.
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~------~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~  161 (223)
T 1dee_B           89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSS------GSASAPTLFPLVSCE-NSNPSSTVAVGCLAQDFLPDSITFS  161 (223)
T ss_dssp             GGCEEEEEEEESSSSTTCCEEEECCCEEEEECS------SCCBCCEEEEEECTT-CCCSSSEEEEEEEEEEEBSSCCEEE
T ss_pred             HHCEEEEEEEeccccCcccceeecCcEEEEEcc------CCCCCCEEEEecCCc-ccCCCCcEEEEEEEEEEeCCCeEEE
Confidence            9999999999987531     111335677761      000244443211111 15689999999999987 7662399


Q ss_pred             EEe-CCCCCCCCCCce-eEeeCCC---EEEEEEcCCCc--ccCeEEEEEEEcCCccceecE
Q psy3823         259 WAF-NNSDTAPRPLTS-YSIQDGS---TSVARYTPTSE--LEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       259 W~~-~~~~~~~~~~~~-~~~~~~~---~s~l~i~~v~~--~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      |++ +|..... .... ....++.   .+.|.|.....  +|.|.|+|.|.|..+.....+
T Consensus       162 W~~~~g~~l~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          162 WKYKNNSDISS-TRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             EEETTSCBCSC-EEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             eEccCCCccce-eEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            999 7764432 1000 0011222   35688888776  789999999999998765543

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.66  E-value=6.9e-16  Score=127.78  Aligned_cols=167  Identities=16%  Similarity=0.134  Sum_probs=97.5

Q ss_pred             ecCCcEEEEEEEEecCC---CCeeEEEeCCeEEeeCCC-CceEEeeceEEE------eeecCCCCeEEEEEEEcCCCCCC
Q psy3823         133 NEGVDIYFDCHIQANPP---YKKLIWTHNGITISNNAS-AGRIITNQTLVL------QSVTRHSGGLYACSAINSQGEGG  202 (365)
Q Consensus       133 ~~g~~v~l~C~~~~~p~---~~~i~W~~~~~~l~~~~~-~~~~~~~~~l~i------~~~~~~d~G~Y~C~~~~~~~~~~  202 (365)
                      .+|+++.|.|.+.+.++   ...+.|++++.++..... ......++.+.+      ...+.+|+|.|+|.+.|..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            78999999999998753   235999999987753211 111112233333      33344569999999999876432


Q ss_pred             cccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCC-CceeEeeCCC
Q psy3823         203 STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRP-LTSYSIQDGS  280 (365)
Q Consensus       203 s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~-~~~~~~~~~~  280 (365)
                       ....+...      .....+|.+........ ...|..+.|.|.+.|. |++..+.|+++|....... .......++.
T Consensus        96 -~~~~v~~~------~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt  167 (207)
T 1l6x_A           96 -IEKTISKA------KGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGS  167 (207)
T ss_dssp             -EEEEECCC------CSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSC
T ss_pred             -eEEEeccC------CCCCcCCEEEEECCChH-HhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCC
Confidence             11122110      00114565543222211 2345669999999986 4432499999986432110 0111133443


Q ss_pred             E---EEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         281 T---SVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       281 ~---s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .   +.|.|.....+|.|.|+|.|.|....
T Consensus       168 ~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          168 FFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            3   33556555556799999999998654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.65  E-value=6.4e-15  Score=125.05  Aligned_cols=180  Identities=13%  Similarity=0.123  Sum_probs=109.3

Q ss_pred             cceecCCcEEEEEEEEec--CCCCeeEEEeC--CeE---Ee-eC-----------CCCceEE------eeceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQAN--PPYKKLIWTHN--GIT---IS-NN-----------ASAGRII------TNQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~--p~~~~i~W~~~--~~~---l~-~~-----------~~~~~~~------~~~~l~i~~~~~  184 (365)
                      ..+.+|++++|.|.+.+.  +.+. +.|+++  +..   +. ..           ...+...      .+.+|.|.+++.
T Consensus        11 v~~~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   89 (242)
T 1hxm_B           11 STKTLSKTARLECVVSGITISATS-VYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (242)
T ss_dssp             EEEETTCCEEEEEEEESSCTTTSC-EEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             EEecCCCcEEEEEEeCCccccCce-EEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCc
Confidence            357899999999999875  4444 999983  221   11 00           1122222      135799999999


Q ss_pred             CCCeEEEEEEEcCCC-C-----CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CC-Cce
Q psy3823         185 HSGGLYACSAINSQG-E-----GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQ-AQY  256 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~-~-----~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~  256 (365)
                      .|+|.|.|.+.+... .     .......|.|.....   ....+|...........+..|+.++|.|.+.+. |. +. 
T Consensus        90 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~---~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~-  165 (242)
T 1hxm_B           90 QDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQL---DADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIK-  165 (242)
T ss_dssp             GGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCC---CSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEE-
T ss_pred             ccCEEEEEeeecCCccccccceeEcCcEEEEEccccc---CCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeE-
Confidence            999999999987631 1     112345677761000   000023222111111225679999999999986 54 45 


Q ss_pred             eEEEeCCC-CCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         257 FTWAFNNS-DTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       257 ~~W~~~~~-~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      +.|++++. .............++.   .+.|.|..+.. + |.|+|.|.|..+.......+.+
T Consensus       166 v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          166 IHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             EEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            99999986 3321110111122332   25688887764 5 9999999999998766666655

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.65  E-value=3.1e-16  Score=132.67  Aligned_cols=200  Identities=18%  Similarity=0.160  Sum_probs=106.6

Q ss_pred             eEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccc-eecCCcEEEEEEEEecC---CCCeeEEEeC
Q psy3823          83 GTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASV-LNEGVDIYFDCHIQANP---PYKKLIWTHN  158 (365)
Q Consensus        83 G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~p---~~~~i~W~~~  158 (365)
                      |.|.|...+..+.......            ..+|.+.+.+.+.   .. +..|+.++|.|.+.|..   .+..|.|++|
T Consensus         1 ~~~~~~~~~~~~~c~~~~~------------~~~P~v~i~~ps~---~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~   65 (240)
T 4acp_A            1 GTKSCDKTHTCPPCPAPEL------------LGGPSVFLFPPKP---KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVD   65 (240)
T ss_dssp             ----------------------------------CEEEEECCCH---HHHHSSSSCCEEEEEEESCCC--CCCEEEEEET
T ss_pred             CceeeeeeecCCCCCcccc------------CCCCEEEEECcCh---HHhcccCCCcEEEEEEeccccCCCccEEEEEEC
Confidence            6899998876553111100            2356666655431   23 55799999999999864   3546999999


Q ss_pred             CeEEeeCCC-------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC-CcccEEEEEeeeeecccccCCCCceecCc
Q psy3823         159 GITISNNAS-------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG-GSTPFDLNINKMVNLIFNSIDEPVCKQSQ  230 (365)
Q Consensus       159 ~~~l~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~s~~~~l~v~~~~~~~~~~~~~p~~~~~~  230 (365)
                      |..+.....       .+.....+.|.|.....+|.|.|+|.+.+..+.. ....+.+.+        ....+|.+....
T Consensus        66 g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~--------~~~~~P~V~v~~  137 (240)
T 4acp_A           66 GVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK--------GQPREPQVYTLP  137 (240)
T ss_dssp             TEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCC--------SCCBCCEEEEEC
T ss_pred             CcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccC--------CCCCCCEEEEEC
Confidence            998843211       1111123467777777788999999999987632 212221101        111456554332


Q ss_pred             cceeeeecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCC-CceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         231 QRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRP-LTSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       231 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      .... ...|+.++|.|.+.++ |.+..+.|+++|....... .......+++.   +.|.+.....++.|.|+|.|.|..
T Consensus       138 ~~~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          138 PSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             CCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CChH-HhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence            2211 2348899999999985 5543599999987532110 00111334443   456666655567899999999975


Q ss_pred             c
Q psy3823         306 G  306 (365)
Q Consensus       306 g  306 (365)
                      -
T Consensus       217 l  217 (240)
T 4acp_A          217 L  217 (240)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.65  E-value=1.3e-15  Score=130.63  Aligned_cols=172  Identities=9%  Similarity=0.082  Sum_probs=102.0

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEe---CCe-E-EeeCC----------C---CceE-----EeeceEEEeeecCCC
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTH---NGI-T-ISNNA----------S---AGRI-----ITNQTLVLQSVTRHS  186 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~---~~~-~-l~~~~----------~---~~~~-----~~~~~l~i~~~~~~d  186 (365)
                      ..+.+|++|+|.|.+.+.+.+. +.|++   +.. . +....          .   ....     ....+|.|.+++.+|
T Consensus        12 ~~v~~G~~v~L~C~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   90 (259)
T 3omz_A           12 VIRQTGSSAEITCDLAEGSTGY-IHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIEND   90 (259)
T ss_dssp             EEEETTCCEEEECCC-----CE-EEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGG
T ss_pred             eEecCCCcEEEEEEEccCCCcE-EEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCccc
Confidence            4678999999999999877665 99998   211 1 11000          0   1111     113469999999999


Q ss_pred             CeEEEEEEEcCCCC--CCcccEEEEEeeeeecc-------cccCCCCceecCccceeeeecCceEEEEEEEeee-CCCce
Q psy3823         187 GGLYACSAINSQGE--GGSTPFDLNINKMVNLI-------FNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQY  256 (365)
Q Consensus       187 ~G~Y~C~~~~~~~~--~~s~~~~l~v~~~~~~~-------~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~  256 (365)
                      +|.|.|.+.+..+.  .......|.|.......       ......|.+...+.. ..+.+|+.++|.|.+.+. |.+. 
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~-  168 (259)
T 3omz_A           91 SGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSS-VSMPVRKAVTLNCLYETSWWSYY-  168 (259)
T ss_dssp             CEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCC-EEEETTCCEEECCEEECCCSSCE-
T ss_pred             CEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCE-EEEcCCCCEEEEEECCCccCCce-
Confidence            99999999987652  22244567776210000       000002334433333 338899999999988774 6676 


Q ss_pred             eEEEeCCCCCCCC-------------CCceeEe--eCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         257 FTWAFNNSDTAPR-------------PLTSYSI--QDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       257 ~~W~~~~~~~~~~-------------~~~~~~~--~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      +.|++.+......             ..++...  .......|.|.+++.+|+|.|.|.+.+.
T Consensus       169 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          169 IFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             EEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             EEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            9999854311110             0111111  1233456999999999999999999854

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.65  E-value=2.6e-15  Score=128.39  Aligned_cols=171  Identities=10%  Similarity=0.083  Sum_probs=107.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCC--CCcceEEEEeCCCc----CC-----C---------CCCceeEe--cCCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSG----TA-----P---------RPLTSYSI--QDGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~----~l-----~---------~~~~~~~~--~~~~~~~l~i~~   76 (365)
                      +....+.+|++++|.|...+.  +.. .+.|||....    .+     .         ...+....  ......+|.|.+
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            7 SGGGLVQPGGSLKLSCAASGFTFSSF-AMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             CCCEEECCCCcEEEEEEeeCccccCc-eEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            345678999999999996442  344 8999985321    00     0         00111111  223455799999


Q ss_pred             CCCCCCeEEEEEEEeCCCC----CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCC
Q psy3823          77 TSELEYGTLLCWARNEQGN----QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYK  151 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~~~----~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~  151 (365)
                      ++.+|+|.|.|.+.+....    ......|.|..     ....+|.+.....    ...+.+|+.++|.|.+.+ .|.+.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~-----~~~~~P~i~~~~~----~~~~~~g~~v~L~C~~~g~~P~~~  156 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSA-----AKTTPPSVYPLAP----GSAAQTNSMVTLGCLVKGYFPEPV  156 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECS-----SCCBCCEEEEECC----------CCEEEEEEEEEEEBSSCC
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEec-----cCCCCCeEEEecC----CcccCCCCcEEEEEEEeeEeCCCe
Confidence            9999999999999875311    12446777721     1124666554332    124567999999999998 66664


Q ss_pred             eeEEEeCCeEEeeCCC-----CceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         152 KLIWTHNGITISNNAS-----AGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       152 ~i~W~~~~~~l~~~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .+.|++++..+.....     .+.....+.|.|.....+| |.|+|.+.|..+.
T Consensus       157 ~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~  209 (253)
T 3liz_H          157 TVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS  209 (253)
T ss_dssp             EEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGT
T ss_pred             EEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCC
Confidence            6999998863210000     0222234678899998889 9999999998764

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.65  E-value=1.1e-15  Score=136.87  Aligned_cols=168  Identities=14%  Similarity=0.237  Sum_probs=107.7

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--CeEEee---------------CCCCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GITISN---------------NASAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~l~~---------------~~~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++++|.|.+.+.+  .+. +.|+++  +..+..               ....+....      ..+|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~-v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (344)
T 1za6_B           10 EVVKPGASVKISCKASGYTFTDHA-IHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRS   88 (344)
T ss_dssp             EEECTTCCEEEEEEEESSCTTSSC-EEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEeCCCcEEEEEEcCCccccccE-EEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCc
Confidence            3578999999999999863  344 999985  332210               001122221      24899999999


Q ss_pred             CCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CC-CceeEEEeC
Q psy3823         185 HSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQ-AQYFTWAFN  262 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~~W~~~  262 (365)
                      +|+|.|.|.+.|..+... ....|.|...      ...+|.+....... .+..|+.++|.|.+.|. |. +. +.|+++
T Consensus        89 ~D~G~Y~C~~~n~~~~~~-~~~~l~V~~~------~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~~~~-v~W~k~  159 (344)
T 1za6_B           89 EDTAVYFCTRSLNMAYWG-QGTLVTVSSA------STKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVT-VSWNSG  159 (344)
T ss_dssp             GGCEEEEEEETTTTCEEC-CCEEEEECSS------CCBCCEEEEECCSC-TTTSSSEEEEEEEEEEEBSSCCC-EEETTT
T ss_pred             ccCEEEEEEEecCcceec-CcEEEEEecC------CCCCCeEEEccccc-cccCCCcEEEEEEEeeEECCCeE-EEEecC
Confidence            999999999998543222 3456777610      00234443222111 25789999999999987 54 56 999998


Q ss_pred             CCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         263 NSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      |..............++.   .+.|.|..+..+| |.|+|.|.|..|..
T Consensus       160 g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~  207 (344)
T 1za6_B          160 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  207 (344)
T ss_dssp             TBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTE
T ss_pred             CccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            764211100001112222   3468999998888 99999999998864

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.65  E-value=1.6e-15  Score=128.38  Aligned_cols=181  Identities=15%  Similarity=0.171  Sum_probs=109.4

Q ss_pred             CCeEEEEcCCccCccc-eecCCcEEEEEEEEec---CCCCeeEEEeCCeEEeeCC-------CCceEEeeceEEEeeecC
Q psy3823         116 KPSVQIKLGRNLNASV-LNEGVDIYFDCHIQAN---PPYKKLIWTHNGITISNNA-------SAGRIITNQTLVLQSVTR  184 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~---p~~~~i~W~~~~~~l~~~~-------~~~~~~~~~~l~i~~~~~  184 (365)
                      +|.+.+.+..   ... +.+|++++|.|.+.+.   |.+..|.|++++..+....       ..+.......|.|.+++.
T Consensus        15 ~P~v~~~pp~---~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~   91 (239)
T 1i1c_A           15 VSSVFIFPPK---TKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDW   91 (239)
T ss_dssp             --CEEEECCC---HHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHH
T ss_pred             CCEEEEECCC---hHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHc
Confidence            4555554432   123 6799999999999986   6664599999887664211       011122345799999999


Q ss_pred             CCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEeCC
Q psy3823         185 HSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNN  263 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~  263 (365)
                      +|+|.|+|.+.+..+... ....+...      .....+|.+........ ...|+.++|.|.+.|. |++..+.|+++|
T Consensus        92 ~D~g~Y~C~~~~~~~~~~-~~~~v~~~------~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g  163 (239)
T 1i1c_A           92 LNGKTFKCKVNSGAFPAP-IEKSISKP------EGTPRGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKMNG  163 (239)
T ss_dssp             HTTCCEEEEEECSSSSSC-EEEEECCC------SSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             cCCCeEEEEEecccCCCC-cEEEEecC------CCCCcCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEECC
Confidence            999999999999877542 11111110      01114565543222211 2357889999999985 443349999998


Q ss_pred             CCCCCCCC-ceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         264 SDTAPRPL-TSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       264 ~~~~~~~~-~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      ........ ......++..   +.|.|.....+|.|.|+|.|.|....
T Consensus       164 ~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          164 QPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            74321110 1112334443   33555555455799999999998654

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.65  E-value=3.2e-15  Score=128.95  Aligned_cols=173  Identities=12%  Similarity=0.068  Sum_probs=102.9

Q ss_pred             cceecCCcEEEEEEEEecCC----CCeeEEEeC--CeE---EeeC-------CCCceEEe----eceEEEeeecCCCCeE
Q psy3823         130 SVLNEGVDIYFDCHIQANPP----YKKLIWTHN--GIT---ISNN-------ASAGRIIT----NQTLVLQSVTRHSGGL  189 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~----~~~i~W~~~--~~~---l~~~-------~~~~~~~~----~~~l~i~~~~~~d~G~  189 (365)
                      ..+.+|++++|.|.+.+.+.    ...+.|+++  +..   +...       ...+....    ..+|.|.+++.+|+|.
T Consensus        25 ~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~  104 (268)
T 1x9q_A           25 LPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGV  104 (268)
T ss_dssp             ECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHCEE
Confidence            46889999999999987662    234999984  221   1110       01122221    3479999999999999


Q ss_pred             EEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCc-------------eecCccceeeeecCceEEEEEEEeeeCC--C
Q psy3823         190 YACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPV-------------CKQSQQRIYGALRNEQVLVSCTVDANPQ--A  254 (365)
Q Consensus       190 Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~  254 (365)
                      |.|.+.+..+........|.|....... ....+|.             +.........+.+|+.++|.|.+.+.++  +
T Consensus       105 Y~C~~~~~~~~~~~~~~~L~V~~~~~~~-~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  183 (268)
T 1x9q_A          105 YFCSQSTHVPWTFGGGTKLEIKSSADDA-KKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHY  183 (268)
T ss_dssp             EEEEECSSSSCEECCCEEEC-------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGC
T ss_pred             EEEEEecCCCceEcCCEEEEEccCccCC-CccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCcccccc
Confidence            9999998754322234556665110000 0000110             0111111234889999999999988764  5


Q ss_pred             ceeEEEeCCCCCC--------------------CCCCceeEee--CCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         255 QYFTWAFNNSDTA--------------------PRPLTSYSIQ--DGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       255 ~~~~W~~~~~~~~--------------------~~~~~~~~~~--~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      . +.|++++....                    ....+.....  ......|.|.+++.+|+|.|+|.|.|.
T Consensus       184 ~-v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          184 W-MNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             E-EEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             E-EEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            5 99998532110                    0112222221  223567999999999999999999875

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.64  E-value=4.5e-15  Score=124.99  Aligned_cols=177  Identities=14%  Similarity=0.141  Sum_probs=107.6

Q ss_pred             CceEEEEecCCcEEEEEEeCCC--CCcceEEEEeCCCcC-CC-------C---------CCceeEe--cCCeEEEEEEcc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGT-AP-------R---------PLTSYSI--QDGSTSVARYTP   76 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~-l~-------~---------~~~~~~~--~~~~~~~l~i~~   76 (365)
                      .+..+.+.+|++++|.|...+.  +.. .+.|||..... +.       .         ..+....  .......|.|.+
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (230)
T 1ypz_F            7 PEISISRPRDETAQISCKVFIESFRSV-TIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS   85 (230)
T ss_dssp             SCSEEEEETTSCEEEEEEECCGGGGGC-CEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred             cCCEEEEeCCCcEEEEEEeeccccCcc-EEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECc
Confidence            3566788999999999997553  455 89999864210 10       0         0111111  111445899999


Q ss_pred             CCCCCCeEEEEEEEeCC--CCC--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCC
Q psy3823          77 TSELEYGTLLCWARNEQ--GNQ--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYK  151 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~--~~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~  151 (365)
                      ++.+|+|.|.|.+.+..  ...  .....|.|........+..+|...+...   ....+.+|+.++|.|.+.+. |.+.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p---~~~~v~~g~~~~L~C~~~g~~P~~~  162 (230)
T 1ypz_F           86 LEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLP---SVAETNLHKTGTYLCLLEAFFPDVI  162 (230)
T ss_dssp             CCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECC---CHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred             CChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECC---CchhhccCCcceEEEEEeeecCCCe
Confidence            99999999999998741  111  1446788842110000001233333221   22345678999999999986 6555


Q ss_pred             eeEEEe-CCeEEeeCCCC------ceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         152 KLIWTH-NGITISNNASA------GRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       152 ~i~W~~-~~~~l~~~~~~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .+.|++ ||..+......      +.......|.|..... + |.|+|.+.|....
T Consensus       163 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          163 RVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             EEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             EEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            699999 88766421110      1111234678877765 4 9999999998764

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.64  E-value=2.8e-15  Score=126.07  Aligned_cols=172  Identities=13%  Similarity=0.186  Sum_probs=107.1

Q ss_pred             cceecCCcEEEEEEEEecCC----CCeeEEEeC--CeEE----eeC----------CCCceEEe------eceEEEeeec
Q psy3823         130 SVLNEGVDIYFDCHIQANPP----YKKLIWTHN--GITI----SNN----------ASAGRIIT------NQTLVLQSVT  183 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~----~~~i~W~~~--~~~l----~~~----------~~~~~~~~------~~~l~i~~~~  183 (365)
                      ..+.+|++++|.|.+.+.+.    +. +.|+++  +..+    ...          ...+....      +.+|.|.+++
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~~-v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   88 (228)
T 3bae_H           10 GLLKPSQTLSLTCSFSGFSIRTSKVG-VSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD   88 (228)
T ss_dssp             SEECTTCCEEEEEEEESSCHHHHCCE-EEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC
T ss_pred             eeecCCCeEEEEEEEeCcccCCCcee-EEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC
Confidence            46789999999999988663    44 999973  2211    110          01122221      3589999999


Q ss_pred             CCCCeEEEEEEEcCCCC--------CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCC
Q psy3823         184 RHSGGLYACSAINSQGE--------GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQA  254 (365)
Q Consensus       184 ~~d~G~Y~C~~~~~~~~--------~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~  254 (365)
                      ..|+|.|.|.+.+..|.        .....+.|.|..      ....+|.+........ +..|+.++|.|.+.+. |.+
T Consensus        89 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~------~~~~~P~i~~~~~~~~-~~~g~~~~l~C~~~g~~P~p  161 (228)
T 3bae_H           89 TADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSS------AKTTAPSVYPLAPVCG-DTTGSSVTLGCLVKGYFPEP  161 (228)
T ss_dssp             GGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECS------CCCBCCEEEEECC------CCSEEEEEEEEEEEBSSC
T ss_pred             cccCEEEEEEEecCCCccccccceeeeCCcEEEEecC------CCCCCCEEEEeccccc-ccCCCCEEEEEEEccEeCCC
Confidence            99999999999987541        111235677661      0012444442221111 5689999999999986 777


Q ss_pred             ceeEEEeCCCCCCCCCCceeEeeCC---CEEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         255 QYFTWAFNNSDTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       255 ~~~~W~~~~~~~~~~~~~~~~~~~~---~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                      ..+.|++++...... ........+   ..+.|.|..+..++ |.|+|.|.|..|.....
T Consensus       162 ~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          162 VTLTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             CEEEEGGGTCCTTEE-EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEEEEeeCCcccCce-EcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            239999987532111 111111122   23568999888766 99999999998876443

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.64  E-value=9.8e-16  Score=129.15  Aligned_cols=183  Identities=13%  Similarity=0.136  Sum_probs=112.0

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEec-CC-CCeeEEEeCCeEE-eeCCC------CceEEeeceEEEeeecCC
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PP-YKKLIWTHNGITI-SNNAS------AGRIITNQTLVLQSVTRH  185 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~i~W~~~~~~l-~~~~~------~~~~~~~~~l~i~~~~~~  185 (365)
                      .+|.+.+...   ....+.+|+.++|.|.+.+. |. +..+.|+++|..+ .....      .+.......|.|.++..+
T Consensus        11 ~~P~v~~~~p---~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~   87 (231)
T 2w59_A           11 SPIQLYAIPP---SPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWL   87 (231)
T ss_dssp             -CCEEEEECC---CHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHH
T ss_pred             CCCEEEEeCc---ChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhcc
Confidence            3566554432   22356799999999999985 53 4359999998776 22111      111122457999999999


Q ss_pred             CCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeCCC
Q psy3823         186 SGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNS  264 (365)
Q Consensus       186 d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~~~  264 (365)
                      |+|.|+|.+.|..+.   ..+.+.+....    ....+|.+........ ...+..++|.|.+.+++++ ..+.|+++|.
T Consensus        88 D~g~Y~C~~~~~~~~---~~~~~~v~~~~----~~~~~P~v~v~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~  159 (231)
T 2w59_A           88 SGERFTCTVQHEELP---LPLSKSVYRNT----GPTTPPLIYPFAPHPE-ELSLSRVTLSCLVRGFRPRDIEIRWLRDHR  159 (231)
T ss_dssp             TTCCEEEEEECTTCS---SCEEEEECCCC----SCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             CCCEEEEEEEcCCCC---CceEEEEecCC----CCCcCCEEEEeCCCHH-HhccCceEEEEEEEeccCCCcEEEEEECCE
Confidence            999999999987753   23445553100    0002454432211111 1234579999999986432 2499999987


Q ss_pred             CCCCCCC-c--eeEe--------eC-CC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         265 DTAPRPL-T--SYSI--------QD-GS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       265 ~~~~~~~-~--~~~~--------~~-~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ....... .  ....        .+ +.   .+.|.|.....+|.|.|+|.|.|.....
T Consensus       160 ~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          160 AVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             ECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             ECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence            5432210 0  0111        23 43   2568888877888999999999987653

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.64  E-value=5.1e-16  Score=125.56  Aligned_cols=152  Identities=13%  Similarity=0.160  Sum_probs=101.0

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeC-CeEEee---------C-CC--CceEE--eeceEEEeeecCCCCeEEEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHN-GITISN---------N-AS--AGRII--TNQTLVLQSVTRHSGGLYACSA  194 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~-~~~l~~---------~-~~--~~~~~--~~~~l~i~~~~~~d~G~Y~C~~  194 (365)
                      ..+.+|++|+|.|...+..+...|.|+++ +..+..         . ..  .+...  .+++|.|.+++..|+|.|.|.+
T Consensus         9 v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v   88 (180)
T 2dru_A            9 VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRM   88 (180)
T ss_dssp             EEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEEE
T ss_pred             EEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEEE
Confidence            46789999999998754222344999994 433321         0 11  22333  3678999999999999999999


Q ss_pred             EcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCce
Q psy3823         195 INSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTS  273 (365)
Q Consensus       195 ~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~~  273 (365)
                      .+..  .....+.|.|.          .++.    .+..  ...+..++|.|.+ .+ |.|. +.|++++....      
T Consensus        89 ~~~~--~~~~~~~L~V~----------~~~~----~P~i--~~~~~~v~L~C~~~~g-p~p~-i~W~~~~~~l~------  142 (180)
T 2dru_A           89 LHET--EDQWKITMEVY----------EMVS----KPMI--YWECSNATLTCEVLEG-TDVE-LKLYQGKEHLR------  142 (180)
T ss_dssp             ESSS--EEEEEEEEEEE----------CCCC----CCEE--EEEGGGTEEEEECSSC-TTCE-EEEEETTEEEE------
T ss_pred             EcCC--eEEEEEEEEEE----------CCCC----CCEE--EecCCCEEEEEEeCCC-CCCE-EEEEECCeECc------
Confidence            8765  33356777777          3221    0111  1234669999999 55 8887 99999876421      


Q ss_pred             eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         274 YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       274 ~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                        ....  ..|.+..  .+|+|.|+|.|.|..|..+....
T Consensus       143 --~~~~--~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          143 --SLRQ--KTMSYQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             --EESS--SEEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             --CCCC--CEEEEEE--hhcCccEEEEEecCcCcccccee
Confidence              0111  2355533  68999999999999998765443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.64  E-value=3.9e-15  Score=126.14  Aligned_cols=173  Identities=11%  Similarity=0.158  Sum_probs=105.7

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEe--------------CCeEEeeCC-CCceEEe-----eceEEEeeecCCCCeE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTH--------------NGITISNNA-SAGRIIT-----NQTLVLQSVTRHSGGL  189 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~--------------~~~~l~~~~-~~~~~~~-----~~~l~i~~~~~~d~G~  189 (365)
                      ..+.+|+++.|.|.+.+ +.+. +.|++              ++....... ..+....     +.+|.|.+++..|+|.
T Consensus        12 v~v~~G~~v~L~C~~~~-~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~   89 (240)
T 3q5y_A           12 IIKEKGGRSVLTCIPIS-GHSN-VVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM   89 (240)
T ss_dssp             EEEETTCCEEEEEECCT-TCCE-EEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred             eeecCCCcEEEEEEeCC-CCce-EEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEE
Confidence            46789999999999865 5554 99998              222221111 1122211     3479999999999999


Q ss_pred             EEEEEEcC--CCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCCceeEEEeCCCCC
Q psy3823         190 YACSAINS--QGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDT  266 (365)
Q Consensus       190 Y~C~~~~~--~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~  266 (365)
                      |.|.+.+.  ..........|.|....    ....+|.+.........+..|+.++|.|.+.+ .|.+..+.|+++|...
T Consensus        90 Y~C~~~~~~~~~~~~~~~~~l~V~~~~----~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l  165 (240)
T 3q5y_A           90 YFCASSLRWGDEQYFGPGTRLTVLEDL----RNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEV  165 (240)
T ss_dssp             EEEEEESSTTBCCEECCCEEEEEESCG----GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             EEEEEccCCCcceEEcCCEEEEEeccc----cCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEEC
Confidence            99999843  22222244566665100    01134444322222222556899999999998 4555248999988644


Q ss_pred             CCCCCc---eeEeeCCCE---EEEEEcCCCccc-CeEEEEEEEcCCccc
Q psy3823         267 APRPLT---SYSIQDGST---SVARYTPTSELE-YGTLLCWARNEQGSQ  308 (365)
Q Consensus       267 ~~~~~~---~~~~~~~~~---s~l~i~~v~~~d-~G~Y~C~a~n~~g~~  308 (365)
                      ......   .....++..   +.|.|.....+| .|.|+|.|.|.....
T Consensus       166 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~  214 (240)
T 3q5y_A          166 HSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  214 (240)
T ss_dssp             CTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             cCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            321110   111223332   348898888888 779999999987543

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.63  E-value=1e-14  Score=122.94  Aligned_cols=178  Identities=19%  Similarity=0.284  Sum_probs=106.9

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--Ce---EEe-eC----------CCCceEEe------eceEEEeeecCC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GI---TIS-NN----------ASAGRIIT------NQTLVLQSVTRH  185 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~---~l~-~~----------~~~~~~~~------~~~l~i~~~~~~  185 (365)
                      ..+.+|++++|.|.+.+.+  .+. +.||+.  +.   .+. ..          ...+....      +.+|.|.+++..
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (232)
T 1dn0_B           10 GLLKPSETLSLTCAVYGGSFSDYY-WSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (232)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCC-EEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEEeCCCcEEEEEEEccccCCCce-EEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence            3678999999999998764  344 999983  22   111 00          01222221      238999999999


Q ss_pred             CCeEEEEEEEcCC--CC---CCcccEEEEEeeeeecccccCCCCceecCccceeeeecC-ceEEEEEEEeee-CCCceeE
Q psy3823         186 SGGLYACSAINSQ--GE---GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRN-EQVLVSCTVDAN-PQAQYFT  258 (365)
Q Consensus       186 d~G~Y~C~~~~~~--~~---~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~~~~~  258 (365)
                      |+|.|.|.+.+..  +.   .......|.|...      ...+|.+........ +..| +.++|.|.+.+. |.+..+.
T Consensus        89 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~------~~~~P~v~~~~p~~~-~~~g~~~v~L~C~~~g~~P~p~~v~  161 (232)
T 1dn0_B           89 DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSG------SASAPTLFPLVSCEN-SPSDTSSVAVGCLAQDFLPDSITFS  161 (232)
T ss_dssp             GCEEEEEEECSSTTSCSCCSEECCCEEEEECSS------CCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEE
T ss_pred             cCEEEEEEEecCCcCCchhhhcccceEEEEccC------CCCCCceEEeccccc-cCCCCCcEEEEEEEEEEeCCCeEEE
Confidence            9999999998422  11   1123457777610      002344432111111 4577 899999999886 7662399


Q ss_pred             EEe-CCCCCCCCCCce-eEeeCCC---EEEEEEcCCCc--ccCeEEEEEEEcCCccceecEEEEE
Q psy3823         259 WAF-NNSDTAPRPLTS-YSIQDGS---TSVARYTPTSE--LEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       259 W~~-~~~~~~~~~~~~-~~~~~~~---~s~l~i~~v~~--~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      |++ +|..... .... .....+.   .+.|.|.....  +|.|.|+|.|.|..+.......+.|
T Consensus       162 W~~~~g~~l~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~  225 (232)
T 1dn0_B          162 WKYKNNSDISS-TRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV  225 (232)
T ss_dssp             EEETTSCEECC-EEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred             EEcCCCCceee-EEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence            999 7764322 1000 0011222   34688988876  7899999999999998765555544

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.63  E-value=4.1e-16  Score=149.54  Aligned_cols=167  Identities=18%  Similarity=0.322  Sum_probs=114.1

Q ss_pred             cceecCCcEEEEEEE-EecCCCCeeEEEeCCeEEeeC-----------CCCceEEeeceEEEeeecCCCCeEEEEEEEcC
Q psy3823         130 SVLNEGVDIYFDCHI-QANPPYKKLIWTHNGITISNN-----------ASAGRIITNQTLVLQSVTRHSGGLYACSAINS  197 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~-~~~p~~~~i~W~~~~~~l~~~-----------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~  197 (365)
                      ..+.+|++++|.|.+ .+.|.+. +.|++++..+...           ........+++|.|.+++..|+|.|+|.+.|.
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~  454 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKPPQR-LEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNR  454 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSSSCE-EEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECT
T ss_pred             cceecCCcEEEeeeecCCCCCce-EEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcC
Confidence            356789999999998 5766666 9999976522110           11223334568999999999999999999998


Q ss_pred             CCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCce-EEEEEEEee-eCCCceeEEEeCCCCCCCCCCceeE
Q psy3823         198 QGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQ-VLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYS  275 (365)
Q Consensus       198 ~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~-~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~~~  275 (365)
                      .+......+.|.|..+       +..|.+......   +..++. +.|.|.+.+ .|.+. +.|+++|...........+
T Consensus       455 ~~~~~~~~~~l~V~~~-------~~~p~i~~~~~~---~~~~~~~~~l~C~~~~~~P~~~-i~W~~~g~~l~~~~~~~~~  523 (581)
T 3o3u_N          455 NGKETKSNYRVRVYQI-------PGKPEIVDSASE---LTAGVPNKVGTCVSEGSYPAGT-LSWHLDGKPLVPNEKGVSV  523 (581)
T ss_dssp             TSCEEEEEEEEEEEBC-------CCCCEEESCCSE---ECTTSCEEEEEEEEEEEBSCCE-EEEEETTEECCTTSTTEEE
T ss_pred             CCceeEEEEEEEEEcC-------CCCCEEEcCCcc---cccCCceeEEEEECCCCCCCCe-EEEEECCEECCCCCCeEEE
Confidence            8876446788888711       123444333222   444544 567999988 58887 9999998755443332221


Q ss_pred             -----e--eCCC---EEEEEEcCCC-cccCeEEEEEEEcCCccc
Q psy3823         276 -----I--QDGS---TSVARYTPTS-ELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       276 -----~--~~~~---~s~l~i~~v~-~~d~G~Y~C~a~n~~g~~  308 (365)
                           .  ..+.   .+.|.|.+++ .++.|.|+|.|.|..+..
T Consensus       524 ~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          524 KEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             EEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             EeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence                 1  2222   3679999988 444889999999997543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.63  E-value=1.2e-14  Score=121.42  Aligned_cols=172  Identities=13%  Similarity=0.212  Sum_probs=106.4

Q ss_pred             cceecCCcEEEEEEEEecC-CCCeeEEEeC--CeEEe----eCC-------------CCceEEe------eceEEEeeec
Q psy3823         130 SVLNEGVDIYFDCHIQANP-PYKKLIWTHN--GITIS----NNA-------------SAGRIIT------NQTLVLQSVT  183 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p-~~~~i~W~~~--~~~l~----~~~-------------~~~~~~~------~~~l~i~~~~  183 (365)
                      ..+.+|++|+|.|.+.+.+ ....+.|++.  +..+.    ...             ..+....      ..+|.|.+++
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   89 (221)
T 3m8o_H           10 GLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLK   89 (221)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCC
T ss_pred             EEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCC
Confidence            3578999999999998643 2234999972  21110    000             1122221      2269999999


Q ss_pred             CCCCeEEEEEEEcCCC-CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCC-CceeEEE
Q psy3823         184 RHSGGLYACSAINSQG-EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQ-AQYFTWA  260 (365)
Q Consensus       184 ~~d~G~Y~C~~~~~~~-~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~~~~W~  260 (365)
                      ..|+|.|.|.+.+... ........|.|..      .....|.+.......  ...|+.++|.|.+.+ .|. +..+.|+
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~------~~~~~p~v~~~~~~~--~~~g~~v~L~C~~~~~~P~~~~~v~W~  161 (221)
T 3m8o_H           90 SDDTAMYYCVIRGDVYNRQWGQGTLVTVSS------ASPTSPKVFPLSLCS--TQPDGNVVIACLVQGFFPQEPLSVTWS  161 (221)
T ss_dssp             GGGCEEEEEEEESCTTCCCBBCCEEEEECS------CCCBCCEEEEEECCS--CCCTTEEEEEEEEEEEBSSCSEEEEES
T ss_pred             HHHCEEEEEEEECCChhheECCCEEEEEec------CCCCCCeEEEecCcc--cccCCCEEEEEEEEeeECCCCEEEEEE
Confidence            9999999999998642 2333445677651      000234443111111  157899999999998 565 4249999


Q ss_pred             eCCCCCCCCCCceeE-eeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823         261 FNNSDTAPRPLTSYS-IQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQR  309 (365)
Q Consensus       261 ~~~~~~~~~~~~~~~-~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~  309 (365)
                      ++|............ ..++.   .+.|.|.++..+|+|.|+|.|.|..+...
T Consensus       162 ~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          162 ESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             CCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            987644211000011 12232   23589999999999999999999886643

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.63  E-value=8.7e-16  Score=131.43  Aligned_cols=170  Identities=13%  Similarity=0.122  Sum_probs=94.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCcC-CC---------C--------CCceeEe--cCCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSGT-AP---------R--------PLTSYSI--QDGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~~-l~---------~--------~~~~~~~--~~~~~~~l~i~~   76 (365)
                      +....+.+|++++|.|...+.+  .+ .+.|||..... +.         .        ..+....  .......|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTFSSY-AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS   85 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGC-CEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred             cCCEEEcCCCcEEEEEEeccccCCCc-eEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence            3446789999999999976655  45 89999864210 10         0        0111111  113445899999


Q ss_pred             CCCCCCeEEEEEEEeCCCC---------C--c--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEE
Q psy3823          77 TSELEYGTLLCWARNEQGN---------Q--R--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCH  143 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~~~---------~--~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~  143 (365)
                      ++.+|+|.|.|.+.+..+.         .  .  ....|.|...     +..+|.+.+...    ...+.+|+.++|.|.
T Consensus        86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~-----~~~~P~v~~~~p----~~~~~~g~~v~L~C~  156 (257)
T 3bn9_D           86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSA-----STKGPSVFPLAP----SSKSTSGGTAALGCL  156 (257)
T ss_dssp             CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSS-----CCBCCEECCCCC---------------CCCE
T ss_pred             CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCC-----CCcCCcEEEecC----cccccCCCcEEEEEE
Confidence            9999999999999986541         1  1  3457887310     112455433221    123567999999999


Q ss_pred             EEec-CCCCeeEEEeCCeEEeeCC------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         144 IQAN-PPYKKLIWTHNGITISNNA------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       144 ~~~~-p~~~~i~W~~~~~~l~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      +.+. |.+..+.|++++..+....      ..+.......|.|.+...+| |.|+|.+.|...
T Consensus       157 ~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~  218 (257)
T 3bn9_D          157 VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  218 (257)
T ss_dssp             EEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred             EeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence            9985 6664699999887632110      11111123467777777777 999999999653

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.63  E-value=5.8e-15  Score=141.54  Aligned_cols=164  Identities=18%  Similarity=0.274  Sum_probs=114.8

Q ss_pred             ceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCC------------CceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRP------------LTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      .....+.+|++++|.|.. .+.|.+ .++|++++.. +...            .......++   +|.|.+++.+|+|.|
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D~G~Y  447 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAPKKPPQ-RLEWKLNTGR-TEAWKVLSPQGGGPWDSVARVLPNG---SLFLPAVGIQDEGIF  447 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCCSSSSC-EEEEEEEETT-SSSCEECCSCCSSGGGGTSEECTTS---CEEESSCCGGGCEEE
T ss_pred             hcccceecCCcEEEeeeecCCCCCc-eEEEEEcCCe-eEEEEecccCCCCCcCCcEEEcCCc---eEEEeccccccCeEE
Confidence            356778999999999996 788888 9999998764 2111            111222334   799999999999999


Q ss_pred             EEEEEeCCCCC-cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCc-EEEEEEEEe-cCCCCeeEEEeCCeEE
Q psy3823          86 LCWARNEQGNQ-RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVD-IYFDCHIQA-NPPYKKLIWTHNGITI  162 (365)
Q Consensus        86 ~C~a~~~~~~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~-v~l~C~~~~-~p~~~~i~W~~~~~~l  162 (365)
                      +|.+.+..+.. ...+.|.|...      ...|.  +....    ..+.+|+. +.|.|.+.+ +|.+. +.|++||..+
T Consensus       448 ~C~~~n~~~~~~~~~~~l~V~~~------~~~p~--i~~~~----~~~~~~~~~~~l~C~~~~~~P~~~-i~W~~~g~~l  514 (581)
T 3o3u_N          448 RCQAMNRNGKETKSNYRVRVYQI------PGKPE--IVDSA----SELTAGVPNKVGTCVSEGSYPAGT-LSWHLDGKPL  514 (581)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEBC------CCCCE--EESCC----SEECTTSCEEEEEEEEEEEBSCCE-EEEEETTEEC
T ss_pred             EEEEEcCCCceeEEEEEEEEEcC------CCCCE--EEcCC----cccccCCceeEEEEECCCCCCCCe-EEEEECCEEC
Confidence            99999988876 57788888311      11333  32221    23555544 567999998 57776 9999999988


Q ss_pred             eeCCCCceE-------------EeeceEEEeeec-CCCCeEEEEEEEcCCCC
Q psy3823         163 SNNASAGRI-------------ITNQTLVLQSVT-RHSGGLYACSAINSQGE  200 (365)
Q Consensus       163 ~~~~~~~~~-------------~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~  200 (365)
                      .........             ...++|.|..+. .++.|.|+|.++|....
T Consensus       515 ~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          515 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             CTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             CCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            643322111             113568999888 55689999999998653

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.62  E-value=5.6e-15  Score=125.54  Aligned_cols=172  Identities=12%  Similarity=0.125  Sum_probs=104.7

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEe--------------CCeEEeeCC-C-CceEEe-----eceEEEeeecCCCCe
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTH--------------NGITISNNA-S-AGRIIT-----NQTLVLQSVTRHSGG  188 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~--------------~~~~l~~~~-~-~~~~~~-----~~~l~i~~~~~~d~G  188 (365)
                      ..+.+|++++|.| ..+.+.+. +.|++              ++....... . .+....     +.+|.|.+++..|+|
T Consensus        12 v~v~~G~~v~L~C-~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   89 (245)
T 4ei6_B           12 QIIDMGQMVTLNC-DPVSNHLY-FYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSA   89 (245)
T ss_dssp             EEEETTCCEEEEE-ECCTTCCE-EEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCE
T ss_pred             EEecCCCCEEEEE-EcCCCCCE-EEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCE
Confidence            4678999999999 55666665 99998              222222211 0 122222     337999999999999


Q ss_pred             EEEEEEEcCC---CCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC-CceeEEEeCCC
Q psy3823         189 LYACSAINSQ---GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ-AQYFTWAFNNS  264 (365)
Q Consensus       189 ~Y~C~~~~~~---~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~~W~~~~~  264 (365)
                      .|.|.+.+..   .........|.|....    ....+|.+.........+..|+.++|.|.+.+.++ +..+.|+++|.
T Consensus        90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~----~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~  165 (245)
T 4ei6_B           90 VYFCASSFWGAYAEQFFGPGTRLTVLEDL----KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK  165 (245)
T ss_dssp             EEEEEEECSSTTCCCEECCCEEEEEESCG----GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             EEEEEEccCCCcceEEEcCCcEEEEeccc----CCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCE
Confidence            9999999642   1222244566666100    00024444322212122556999999999998544 42499999876


Q ss_pred             CCCCCCCceeE-e-------eCCCE---EEEEEcCCCccc-CeEEEEEEEcCCccc
Q psy3823         265 DTAPRPLTSYS-I-------QDGST---SVARYTPTSELE-YGTLLCWARNEQGSQ  308 (365)
Q Consensus       265 ~~~~~~~~~~~-~-------~~~~~---s~l~i~~v~~~d-~G~Y~C~a~n~~g~~  308 (365)
                      ...... .... .       .++..   +.|.|.....+| .|.|+|.|.|.....
T Consensus       166 ~l~~~~-~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~  220 (245)
T 4ei6_B          166 EVHSGV-CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  220 (245)
T ss_dssp             EECTTE-EECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             ECCCCc-ccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCC
Confidence            433211 1000 0       13332   348888887778 999999999976554

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.62  E-value=2.2e-15  Score=129.93  Aligned_cols=173  Identities=14%  Similarity=0.141  Sum_probs=105.1

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEe--CCeEE------------eeCC-C-CceEEe-----eceEEEeeecCCCCe
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTH--NGITI------------SNNA-S-AGRIIT-----NQTLVLQSVTRHSGG  188 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~--~~~~l------------~~~~-~-~~~~~~-----~~~l~i~~~~~~d~G  188 (365)
                      ..+.+|++++|.|.+. .+.+. +.|++  .+..+            .... . .+....     +.+|.|.+++..|+|
T Consensus        36 v~v~~G~~v~L~C~~~-~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G  113 (268)
T 3pl6_D           36 KVTEKGKYVELRCDPI-SGHTA-LYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSA  113 (268)
T ss_dssp             EEEETTCCEEEEEBCB-TTCCE-EEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCE
T ss_pred             EEecCCCCEEEEEEeC-CCCce-EEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCE
Confidence            3578999999999876 34454 99998  22211            1100 0 122221     457999999999999


Q ss_pred             EEEEEEEcCC-CCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCc-eeEEEeCCCCC
Q psy3823         189 LYACSAINSQ-GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDT  266 (365)
Q Consensus       189 ~Y~C~~~~~~-~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~  266 (365)
                      .|.|.+.+.. .........|.|....    ....+|.+.........+..|+.++|.|.+.+.+++. .+.|+++|...
T Consensus       114 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~----~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l  189 (268)
T 3pl6_D          114 VYLCATSALGDTQYFGPGTRLTVLEDL----KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  189 (268)
T ss_dssp             EEEEEEESSSSSCEECCCEEEEEESCG----GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEE
T ss_pred             EEEEEEecCCCceeeCCcEEEEEecCc----ccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEEC
Confidence            9999999742 2222244567776100    0012454443222222255699999999999866552 49999988644


Q ss_pred             CCCCCce-------eEeeCCCE---EEEEEcCCCccc-CeEEEEEEEcCCccc
Q psy3823         267 APRPLTS-------YSIQDGST---SVARYTPTSELE-YGTLLCWARNEQGSQ  308 (365)
Q Consensus       267 ~~~~~~~-------~~~~~~~~---s~l~i~~v~~~d-~G~Y~C~a~n~~g~~  308 (365)
                      .......       ....++..   +.|.|.....+| +|.|+|.|.|.....
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          190 HSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             CTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             CCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence            3211000       00123322   457787777777 999999999987653

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.62  E-value=2.1e-16  Score=131.64  Aligned_cols=169  Identities=15%  Similarity=0.165  Sum_probs=106.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCC---cceEEEEeCCCcCCCCCCcee-E-ecC---CeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQ---AQYFTWAFNNSGTAPRPLTSY-S-IQD---GSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~---~~~v~W~~~~~~~l~~~~~~~-~-~~~---~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      +....+.+|+.++|.|.+.+.+.   + .+.| ++ .. +....... . ..+   .....|.|.+++.+|.|.|+|.+.
T Consensus        11 P~~~~v~~G~~v~L~C~~~g~~p~~~~-~v~W-~~-~~-~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~   86 (214)
T 1ow0_A           11 PALEDLLLGSEANLTCTLTGLRDASGV-TFTW-TP-SS-GKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAA   86 (214)
T ss_dssp             CCHHHHHHCSSCCCEEEETTCCSCCCC-CCCB-SS-CS-SCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEEC
T ss_pred             cChHHhccCCCcEEEEEEeeeECCCCe-EEEE-cC-CC-CCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEe
Confidence            44455789999999999777654   5 8999 44 33 32211000 0 011   134578899999999999999999


Q ss_pred             eCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEEeCCeEEeeCCC--
Q psy3823          91 NEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWTHNGITISNNAS--  167 (365)
Q Consensus        91 ~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~~--  167 (365)
                      +..+.......+.+  ..    ...+|.+.+.+..   ...+.+|+.++|.|.+.|. |++..|.|++||..+.....  
T Consensus        87 ~~~~~~~~~~~i~~--~~----~~~~P~v~~~~~~---~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  157 (214)
T 1ow0_A           87 YPESKTPLTATLSK--SG----NTFRPEVHLLPPP---SEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT  157 (214)
T ss_dssp             CSSCSSCEEEEEEC--CS----SCCCCEEEEECCC---TTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE
T ss_pred             cCCCCCceeEeecc--CC----CCCCCEEEecCCC---HHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee
Confidence            87664433333321  00    1457777665432   1236689999999999985 54446999999988754310  


Q ss_pred             -CceEE---eec------eEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         168 -AGRII---TNQ------TLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       168 -~~~~~---~~~------~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                       .....   .++      .|.+.....++.|.|+|.|.|....
T Consensus       158 ~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          158 WASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             CCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             cCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence             01122   233      3344444445689999999998653

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-14  Score=131.67  Aligned_cols=166  Identities=14%  Similarity=0.138  Sum_probs=109.6

Q ss_pred             EecCCcEEEEEEeCCC---CCcceEEEEeCCCcCCCCCCce--eEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          24 ALRNEQVLVSCTVDAN---PQAQYFTWAFNNSGTAPRPLTS--YSIQDG---STSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~---p~~~~v~W~~~~~~~l~~~~~~--~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      +.+|+.++|.|.+.+.   |....|+|++++.. +......  ....++   ..+.|.|..++.+|.|.|+|.+.+..+.
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  258 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVE-VHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP  258 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCcc-ccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCC
Confidence            6789999999996666   44347999999866 4322111  001111   3347999999999999999999987664


Q ss_pred             CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCeeEEEeCCeEEeeCCCCc-----
Q psy3823          96 QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKKLIWTHNGITISNNASAG-----  169 (365)
Q Consensus        96 ~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~~~~l~~~~~~~-----  169 (365)
                      ......+.+. .    ....+|.+.+.+..    ....+|+.++|.|.+.|. |+...|+|++||..+.......     
T Consensus       259 ~~~~~~v~~~-~----~~~~~P~v~v~~~~----~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~  329 (376)
T 2aty_A          259 APIEKTISKT-K----GRPKAPQLYTIPPP----KEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNT  329 (376)
T ss_pred             CceEEEEcCC-C----CCCcCCeEEeeCCC----HHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECC
Confidence            4332233210 0    01457777766533    234468999999999984 4455699999998874321111     


Q ss_pred             --eEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         170 --RIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       170 --~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                        .......|.+.....+|.|.|+|.|.|...
T Consensus       330 dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          330 NESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             CCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence              111234577777777889999999998765

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.61  E-value=4.7e-15  Score=108.80  Aligned_cols=94  Identities=17%  Similarity=0.256  Sum_probs=76.5

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +|.|...+.. ..+.+|+.+.|.|.+.|.|.|. +.|+++|.... ...+..+..++..+.|.|.+++.+|+|.|+|.|.
T Consensus        13 pP~f~~~p~~-~~v~~G~~~~l~C~~~G~P~p~-v~W~k~g~~l~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           13 PPCFLRFPRP-VRVVSGAEAELKCVVLGEPPPV-VVWEKGGQQLA-ASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             EEEEEECCCC-EEEETTSCEEEEEEEEEESCCE-EEEEETTEECC-CCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeCCCc-EEEeCCCcEEEEEEEEEecCCE-EEEEECccccc-ceeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence            4555544444 3388999999999999999998 99999987543 3445555566777889999999999999999999


Q ss_pred             cCCccceecEEEEEEcC
Q psy3823         303 NEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       303 n~~g~~~~~~~l~v~~~  319 (365)
                      |..|..+.++.|.|..+
T Consensus        90 N~~G~~~~~~~l~V~~p  106 (107)
T 3knb_B           90 NAAGEAYAAAAVTVLEP  106 (107)
T ss_dssp             ETTEEEEEEEEEEEEC-
T ss_pred             ECCCEEEEEEEEEEEcC
Confidence            99999999999988754

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.60  E-value=2.2e-14  Score=119.42  Aligned_cols=172  Identities=13%  Similarity=0.229  Sum_probs=103.3

Q ss_pred             cceecCCcEEEEEEEEecC-CCCeeEEEeC--CeEE----eeC----------CCCceEEe------eceEEEeeecCCC
Q psy3823         130 SVLNEGVDIYFDCHIQANP-PYKKLIWTHN--GITI----SNN----------ASAGRIIT------NQTLVLQSVTRHS  186 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p-~~~~i~W~~~--~~~l----~~~----------~~~~~~~~------~~~l~i~~~~~~d  186 (365)
                      ..+.+|++++|.|.+.+.+ ....+.|+++  +..+    ...          ...+....      +.+|.|.+++..|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (215)
T 1c5d_H           10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (215)
T ss_dssp             CEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGG
T ss_pred             eeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCccc
Confidence            4678999999999998764 2233999984  2211    100          01122221      2489999999999


Q ss_pred             CeEEEEEEEcCCCC--CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEeCC
Q psy3823         187 GGLYACSAINSQGE--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNN  263 (365)
Q Consensus       187 ~G~Y~C~~~~~~~~--~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~  263 (365)
                      +|.|.|.+.+..+.  .....+.|.|..      ....+|.+........ +..|+.++|.|.+.+. |.+..+.|++++
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~L~V~~------~~~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  162 (215)
T 1c5d_H           90 TAIYFCTREDGWNYFDYWGPGTMVTVSS------AQTTAPSVYPLAPGCG-DTTSSTVTLGCLVKGYFPEPVTVTWNSGA  162 (215)
T ss_dssp             CEEEEEEECCSSSCSCCBCCCEEEEECS------SCCBCCCEEEECCCSS-CCCCSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CEEEEEEEecCCcccceEcCCEEEEecC------CCCCCCeEEeccCChh-hccCCcEEEEEEEeeeEcCCcEEEEccCC
Confidence            99999999986532  222346777761      0012454442221111 5679999999999986 777239999987


Q ss_pred             CCCCCCCCceeEeeCCCEEE-EEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823         264 SDTAPRPLTSYSIQDGSTSV-ARYTPTSELEYGTLLCWARNEQGSQRT  310 (365)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~s~-l~i~~v~~~d~G~Y~C~a~n~~g~~~~  310 (365)
                      .......... ....+.... ..+.....+| |.|+|.|.|..|....
T Consensus       163 ~~~~~~~~~~-~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~  208 (215)
T 1c5d_H          163 LSSDVHTFPA-VLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV  208 (215)
T ss_dssp             TCCSCCBCCC-EEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred             ccCceEecCc-ccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence            6422111111 112232221 1122444456 9999999999887543

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.60  E-value=1.4e-14  Score=124.25  Aligned_cols=169  Identities=15%  Similarity=0.257  Sum_probs=105.0

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--CeEEe----eC-----------CCCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GITIS----NN-----------ASAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~l~----~~-----------~~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++|+|.|.+.+.+  .+. +.|+++  +..+.    ..           ...+....      +.+|.|.+++.
T Consensus        16 ~~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   94 (261)
T 2xqy_G           16 ELVKPGASVKMSCKASGYSFTSYW-MNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTS   94 (261)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSC-EEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EEEcCCCCEEEEEEeCCcccCCce-EEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCc
Confidence            3578999999999998765  445 999985  22211    00           01122221      35899999999


Q ss_pred             CCCeEEEEEEEcCCCC--CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEe
Q psy3823         185 HSGGLYACSAINSQGE--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAF  261 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~--~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~  261 (365)
                      .|+|.|.|.+.+..+.  .....+.|.|...      ...+|.+....... .+..|+.++|.|.+.+. |.+..+.|++
T Consensus        95 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~------~~~~P~v~~~~p~~-~v~~g~~v~L~C~~~g~~P~~i~v~W~k  167 (261)
T 2xqy_G           95 EDSAVYYCGRLGYVYGFDYWGQGTTLTVSSA------KTTAPSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNS  167 (261)
T ss_dssp             GGCEEEEEEEECTTSSEEEECCCEEEEECSS------CCBCCEEEEECCCC-C--CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             ccCeEEEEEEecCCCcceEECCCEEEEEccC------CCCCCeEEEeCCCc-cccCCCcEEEEEEEEeEeCCCCEEEEec
Confidence            9999999999986421  1113356777610      00234443222111 25679999999999885 6662499999


Q ss_pred             CCCCCCCCCCceeEeeCC---CEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         262 NNSDTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~---~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ++............ ..+   ..+.|.|..+..+| |.|+|.|.|.....
T Consensus       168 ~g~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~  215 (261)
T 2xqy_G          168 GSLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST  215 (261)
T ss_dssp             GTCCTTEEECCCEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             CCCcCceEecCcee-cCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCc
Confidence            87642111001111 112   23579999888888 99999999966543

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.60  E-value=9e-15  Score=125.11  Aligned_cols=169  Identities=13%  Similarity=0.220  Sum_probs=92.5

Q ss_pred             cceecCCcEEEEEEEEecC--CCCeeEEEeC--CeEEe----eC-----------CCCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKLIWTHN--GITIS----NN-----------ASAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i~W~~~--~~~l~----~~-----------~~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++|+|.|.+.+.+  .+. +.|++.  +..+.    ..           ...+....      ..+|.|.+++.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (257)
T 3bn9_D           10 GLVKPGGSLRLSCAASGFTFSSYA-MSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA   88 (257)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGCC-EEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred             EEEcCCCcEEEEEEeccccCCCce-EEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            3578999999999998765  344 999984  22111    00           01122221      34799999999


Q ss_pred             CCCeEEEEEEEcCCCC------------CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-
Q psy3823         185 HSGGLYACSAINSQGE------------GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-  251 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~~------------~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-  251 (365)
                      .|+|.|.|.+.+..+.            .......|.|...      ...+|.+........ +..|+.++|.|.+.+. 
T Consensus        89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~------~~~~P~v~~~~p~~~-~~~g~~v~L~C~~~g~~  161 (257)
T 3bn9_D           89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSA------STKGPSVFPLAPSSK-STSGGTAALGCLVKDYF  161 (257)
T ss_dssp             GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSS------CCBCCEECCCCC------------CCCEEEEEB
T ss_pred             hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCC------CCcCCcEEEecCccc-ccCCCcEEEEEEEeeEE
Confidence            9999999999987641            1113356777610      002354432221111 5678999999999986 


Q ss_pred             CCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         252 PQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       252 p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      |.+..+.|++++..............++.   .+.|.|.++..+| |.|+|.|.|....
T Consensus       162 P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~  219 (257)
T 3bn9_D          162 PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  219 (257)
T ss_dssp             SSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred             CCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence            76624999998764211100011122332   3457888887778 9999999996544

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.59  E-value=8.2e-15  Score=124.15  Aligned_cols=171  Identities=13%  Similarity=0.174  Sum_probs=105.9

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC----CcceEEEEeCCCcC-C------C------CC----------CceeEe--cCCeE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP----QAQYFTWAFNNSGT-A------P------RP----------LTSYSI--QDGST   69 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p----~~~~v~W~~~~~~~-l------~------~~----------~~~~~~--~~~~~   69 (365)
                      +....+.+|+.++|.|...+.+    .. .+.||+..... .      .      ..          .+....  .....
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~-~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   85 (239)
T 3tv3_H            7 SGPTLVEASETLSLTCAVSGDSTAACNS-FWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL   85 (239)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSSC-EEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCcccccce-EEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence            3456689999999999954443    34 89999853210 0      0      00          010111  12344


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCCC-------------CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCC
Q psy3823          70 SVARYTPTSELEYGTLLCWARNEQGN-------------QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV  136 (365)
Q Consensus        70 ~~l~i~~~~~~d~G~Y~C~a~~~~~~-------------~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~  136 (365)
                      ..|.|.+++.+|+|.|.|.+.+..+.             ......|.|..     .+..+|.+......    ..+.+|+
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~-----~~~~~P~v~~~~~~----~~~~~g~  156 (239)
T 3tv3_H           86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSS-----ASTKGPSVFPLAPS----SKSTSGG  156 (239)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECC-----CCCBCCEEEEECCC----CCC--TT
T ss_pred             EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeecc-----CCCcCCEEEEECCC----hhhccCC
Confidence            57999999999999999999865320             11334666621     11235665543322    2355799


Q ss_pred             cEEEEEEEEe-cCCCCeeEEEeCCeEEeeC------CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         137 DIYFDCHIQA-NPPYKKLIWTHNGITISNN------ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       137 ~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .++|.|.+.+ .|.+..+.|++++..+...      ...+.....+.|.|.....+| |.|+|.+.|..+.
T Consensus       157 ~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~  226 (239)
T 3tv3_H          157 TAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  226 (239)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred             cEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCC
Confidence            9999999997 5555557899988633111      111122224578888888888 9999999998753

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.59  E-value=1.1e-14  Score=105.45  Aligned_cols=95  Identities=13%  Similarity=0.149  Sum_probs=75.7

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC-CceeEeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      .+|.+...+.. ..+.+|+.+.|.|.+.|.|.|. +.|+++|....... .+..+...+..+.|.|.+++.+|+|.|+|.
T Consensus         4 ~PP~i~~~p~~-~~v~~G~~~~l~C~~~g~P~p~-v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   81 (100)
T 3knb_A            4 IPPKIEALPSD-ISIDEGKVLTVACAFTGEPTPE-VTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLS   81 (100)
T ss_dssp             EEEEECCCCSE-EEEETTSEEEEEEEEEEESCCE-EEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeCCCc-EEEeCCCeEEEEEEEEEecCCE-EEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEE
Confidence            34555443333 3489999999999999999998 99999987544322 234556667778899999999999999999


Q ss_pred             EEcCCccceecEEEEEEc
Q psy3823         301 ARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       301 a~n~~g~~~~~~~l~v~~  318 (365)
                      |.|..|..+.++.|.|+.
T Consensus        82 a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           82 LGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEE
Confidence            999999999998888863

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.59  E-value=2.4e-15  Score=110.42  Aligned_cols=91  Identities=18%  Similarity=0.248  Sum_probs=75.9

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      +|.+.. .+....+.+|+.+.|.|.+.+.|.+ .++|+|++.. +..........++...+|.|.+++.+|+|.|+|.|.
T Consensus        13 pP~f~~-~p~~~~v~~G~~~~l~C~~~G~P~p-~v~W~k~g~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           13 PPCFLR-FPRPVRVVSGAEAELKCVVLGEPPP-VVVWEKGGQQ-LAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEE-CCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEe-CCCcEEEeCCCcEEEEEEEEEecCC-EEEEEECccc-ccceeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence            454433 4456778999999999998899999 9999999998 776655444455566789999999999999999999


Q ss_pred             eCCCCCcccEEEEE
Q psy3823          91 NEQGNQRTPCTFHV  104 (365)
Q Consensus        91 ~~~~~~~~~~~l~V  104 (365)
                      |..|.....+.|.|
T Consensus        90 N~~G~~~~~~~l~V  103 (107)
T 3knb_B           90 NAAGEAYAAAAVTV  103 (107)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            99998888888988

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.59  E-value=4.2e-15  Score=125.66  Aligned_cols=166  Identities=16%  Similarity=0.185  Sum_probs=103.8

Q ss_pred             EecCCcEEEEEEeCCC---CCcceEEEEeCCCcCCCCCCcee--EecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          24 ALRNEQVLVSCTVDAN---PQAQYFTWAFNNSGTAPRPLTSY--SIQDG---STSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~---p~~~~v~W~~~~~~~l~~~~~~~--~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      +..|+.++|.|.+.+.   |.+..++|++++.. +.......  ...++   ..+.|.|.....+|.|.|+|.|.+..+.
T Consensus        36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~-l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~  114 (240)
T 4acp_A           36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVE-VHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP  114 (240)
T ss_dssp             HSSSSCCEEEEEEESCCC--CCCEEEEEETTEE-ECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC---
T ss_pred             cccCCCcEEEEEEeccccCCCccEEEEEECCcc-cCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCC
Confidence            3459999999996554   43348999999987 64432111  11122   2346888888888899999999987764


Q ss_pred             CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCC-------C
Q psy3823          96 QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNA-------S  167 (365)
Q Consensus        96 ~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~-------~  167 (365)
                      ......+... .    ....+|.+.+.+...    ...+|+.++|.|.+.+ +|.+..+.|++||..+....       .
T Consensus       115 ~~~~~~i~~~-~----~~~~~P~V~v~~~~~----~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~  185 (240)
T 4acp_A          115 APIEKTISKA-K----GQPREPQVYTLPPSR----DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDS  185 (240)
T ss_dssp             -CEEEEECCC-C----SCCBCCEEEEECCCG----GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECT
T ss_pred             cccccccccc-C----CCCCCCEEEEECCCh----HHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECC
Confidence            3322222110 0    014578777765431    2335899999999998 56555699999998864211       1


Q ss_pred             CceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         168 AGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       168 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      .+.......|.+.....++.|.|+|.+.+..-
T Consensus       186 dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          186 DGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             TSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            11122234566666666789999999998764

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.58  E-value=1.6e-14  Score=121.79  Aligned_cols=171  Identities=13%  Similarity=0.136  Sum_probs=101.7

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--Cc-ceEEEEeCCCc----CC-----CCC-----------CceeEe--cCCeEEEEEE
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QA-QYFTWAFNNSG----TA-----PRP-----------LTSYSI--QDGSTSVARY   74 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~-~~v~W~~~~~~----~l-----~~~-----------~~~~~~--~~~~~~~l~i   74 (365)
                      ....+.+|++++|.|...+.+  .. ..+.|||....    .+     ...           .+....  .......|.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (232)
T 3qhz_H            8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM   87 (232)
T ss_dssp             CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred             CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence            345689999999999964422  23 13499985321    00     000           011111  1234557999


Q ss_pred             ccCCCCCCeEEEEEEEeCCC--------CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe
Q psy3823          75 TPTSELEYGTLLCWARNEQG--------NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA  146 (365)
Q Consensus        75 ~~~~~~d~G~Y~C~a~~~~~--------~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  146 (365)
                      .+++.+|+|.|.|.+.+..+        .......|.|..     .+..+|.+......    ..+..|+.++|.|.+.+
T Consensus        88 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~-----~~~~~P~v~~~~~~----~~~~~g~~v~L~C~~~~  158 (232)
T 3qhz_H           88 TNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSS-----ASTKGPSVFPLAPS----SKSTSGGTAALGCLVKD  158 (232)
T ss_dssp             CSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECS-----SCCBCCEEEEECC-----------CEEEEEEEEEE
T ss_pred             CcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEec-----CCCCCCEEEEeccc----ccccCCCcEEEEEEEee
Confidence            99999999999999986531        112445677721     11245665533321    24567999999999997


Q ss_pred             cCC-CCeeEEEeCCeEEeeC------CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         147 NPP-YKKLIWTHNGITISNN------ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       147 ~p~-~~~i~W~~~~~~l~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .++ +..+.|++++..+...      ...+.......|.|.....+| |.|+|.+.|..+.
T Consensus       159 ~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~  218 (232)
T 3qhz_H          159 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  218 (232)
T ss_dssp             EBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred             EeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCC
Confidence            543 5457799988633110      111122224578888888888 9999999998754

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.57  E-value=3.3e-14  Score=121.46  Aligned_cols=178  Identities=13%  Similarity=0.196  Sum_probs=106.9

Q ss_pred             cceecCCcEEEEEEEEec--CCCCeeEEEeC--Ce--EEe--eC-----------CCCceEEe------eceEEEeeecC
Q psy3823         130 SVLNEGVDIYFDCHIQAN--PPYKKLIWTHN--GI--TIS--NN-----------ASAGRIIT------NQTLVLQSVTR  184 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~--p~~~~i~W~~~--~~--~l~--~~-----------~~~~~~~~------~~~l~i~~~~~  184 (365)
                      ..+.+|++|+|.|.+.+.  +... +.|++.  +.  ...  ..           ...+....      +.+|.|.+++.
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (253)
T 3liz_H           10 GLVQPGGSLKLSCAASGFTFSSFA-MSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKS   88 (253)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSC-EEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCG
T ss_pred             EEECCCCcEEEEEEeeCccccCce-EEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence            467899999999999863  2344 999973  11  111  00           01112111      23599999999


Q ss_pred             CCCeEEEEEEEcCCC---CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCCceeEEE
Q psy3823         185 HSGGLYACSAINSQG---EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWA  260 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~---~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~~W~  260 (365)
                      +|+|.|.|.+.+...   ........|.|..      .....|.+....... .+..|+.++|.|.+.+ .|.+..+.|+
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~------~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~~~~v~W~  161 (253)
T 3liz_H           89 EDTAMYYCTRDPAGRAWFAYWGQGTLVTVSA------AKTTPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWN  161 (253)
T ss_dssp             GGCEEEEEEECCBTTTBCCEECCCEEEEECS------SCCBCCEEEEECC-------CCEEEEEEEEEEEBSSCCEEEEG
T ss_pred             hhCEEEEEEEecCCcceeeEECCCEEEEEec------cCCCCCeEEEecCCc-ccCCCCcEEEEEEEeeEeCCCeEEEEE
Confidence            999999999987631   1112335666641      001345444222111 1557999999999998 5656249999


Q ss_pred             eCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         261 FNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      +++........... ...+.   .+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       162 ~~~~~~~~~~~~~~-~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          162 SGSLSSGVHTFPAV-LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             GGTBCTTEEECCCE-EETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             eCCeecceEeCCcc-ccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            98753211000001 11122   2569999999999 99999999998876655555443

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=125.73  Aligned_cols=174  Identities=14%  Similarity=0.178  Sum_probs=106.7

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCC--eE---Ee--eC----------CCCceEEe-----eceEEEeeecCCCC
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNG--IT---IS--NN----------ASAGRIIT-----NQTLVLQSVTRHSG  187 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~--~~---l~--~~----------~~~~~~~~-----~~~l~i~~~~~~d~  187 (365)
                      ..+.+|++++|.|.+.+.+.+. +.|+++.  ..   +.  ..          ...+....     +.+|.|.+++.+|+
T Consensus        34 v~v~~G~~v~L~C~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~  112 (279)
T 2wbj_D           34 VISKSGTSVKIECRSLDFQATT-MFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS  112 (279)
T ss_dssp             EEEETTSCEEEEEEESSSCEEE-EEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGC
T ss_pred             EEecCCCeEEEEEEeCCCCCCe-EEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccCC
Confidence            4688999999999997766555 9999853  11   10  00          01122221     34799999999999


Q ss_pred             eEEEEEEEcCCCC-----CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC--CceeEEE
Q psy3823         188 GLYACSAINSQGE-----GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ--AQYFTWA  260 (365)
Q Consensus       188 G~Y~C~~~~~~~~-----~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~~W~  260 (365)
                      |.|.|.+.+..+.     .......|.|....    ....+|.+.........+..|+.++|.|.+.+.++  +. +.|+
T Consensus       113 G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~----~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~-v~W~  187 (279)
T 2wbj_D          113 SFYICSARDLTSGANNEQFFGPGTRLTVTEDL----KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE-LSWW  187 (279)
T ss_dssp             EEEEEEEEETTCBTSCCEEECCCEEEEEESCG----GGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE-EEEE
T ss_pred             EEEEEEEcccccCCccceeeCCCEEEEEecCC----CCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE-EEEE
Confidence            9999999984321     11233567776100    00124544332211112457899999999998744  45 9999


Q ss_pred             eCCCCCCCCCCce--eE-----eeCCC---EEEEEEcCCCccc-CeEEEEEEEcCCccce
Q psy3823         261 FNNSDTAPRPLTS--YS-----IQDGS---TSVARYTPTSELE-YGTLLCWARNEQGSQR  309 (365)
Q Consensus       261 ~~~~~~~~~~~~~--~~-----~~~~~---~s~l~i~~v~~~d-~G~Y~C~a~n~~g~~~  309 (365)
                      ++|..........  ..     ..++.   .+.|.|.+...+| .|.|+|.|.|......
T Consensus       188 k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~  247 (279)
T 2wbj_D          188 VNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  247 (279)
T ss_dssp             ETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred             ECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence            9886443221100  00     12333   2458888877664 7789999999876554

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.57  E-value=4.9e-14  Score=138.79  Aligned_cols=195  Identities=12%  Similarity=0.113  Sum_probs=129.4

Q ss_pred             cCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeee-cCCCCeEEEEEEEcCCCCCCcccEEEEEee
Q psy3823         134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSV-TRHSGGLYACSAINSQGEGGSTPFDLNINK  212 (365)
Q Consensus       134 ~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~  212 (365)
                      .+..+.|.|.+.|.|.+. +.|.++|..+..       .....+.|..+ .....+.|.|.+.+..|......+.+... 
T Consensus        90 ~~g~l~v~c~~~g~P~p~-i~W~k~g~~~~~-------~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~-  160 (731)
T 2v5y_A           90 PPGLLNVYVKVNNGPLGN-PIWNISGDPTRT-------WNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH-  160 (731)
T ss_dssp             CSEEEEEEEEETTCCCCS-EEEEECCCCCSS-------CEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESS-
T ss_pred             CcceEEEEEecCCCCccc-eeEEEeCCcCCc-------eeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeec-
Confidence            346899999999998888 999999876532       11234445443 22334778887666666432222222211 


Q ss_pred             eeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeE-EE--eCCCCCCCCCCceeEeeCCCEEEEEEcCC
Q psy3823         213 MVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFT-WA--FNNSDTAPRPLTSYSIQDGSTSVARYTPT  289 (365)
Q Consensus       213 ~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~s~l~i~~v  289 (365)
                            ....+|.+... .. ..+..|+.+.|.|.+.|.|.|. +. |+  ++|..... .....+......+.|.|.++
T Consensus       161 ------~~~~~p~~~~~-~~-~~v~~G~~v~l~C~~~g~P~p~-i~~W~~~~~g~~l~~-~~~~~~~~~~~~~~l~I~~~  230 (731)
T 2v5y_A          161 ------PCTRTPHFLRI-QN-VEVNAGQFATFQCSAIGRTVAG-DRLWLQGIDVRDAPL-KEIKVTSSRRFIASFNVVNT  230 (731)
T ss_dssp             ------CCSSSCEECCC-CC-EEEETTSCEEEEEEEESCCCTT-CEEEEEESSSCCEEE-EEEEECCSSEEEEEEEECSC
T ss_pred             ------ccccccccccc-cc-eEEeCCCcEEEEEEeCCCCCCc-eeEEEecCCCccccc-cceEEeccccceEEEEEccc
Confidence                  00134555532 22 4488999999999999999998 87 77  45542211 00011112223467999999


Q ss_pred             CcccCeEEEEEEEcCCcc-ceecEEEEEEcCcc------------------cc--------------c------------
Q psy3823         290 SELEYGTLLCWARNEQGS-QRTPCTFHVVKAGE------------------CE--------------H------------  324 (365)
Q Consensus       290 ~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~------------------c~--------------~------------  324 (365)
                      ..+|.|.|+|.|.|..|. .+..+.|.|..++.                  |.              +            
T Consensus       231 ~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~  310 (731)
T 2v5y_A          231 TKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDR  310 (731)
T ss_dssp             CTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEE
T ss_pred             ccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEE
Confidence            999999999999999997 67777777753322                  11              0            


Q ss_pred             -----------cCccccEEEEEEEEE--cCCCCCce
Q psy3823         325 -----------PVAVSHRYVAKLYAT--NAKGAGPM  347 (365)
Q Consensus       325 -----------~l~~~~~~~~~~~~~--n~~g~s~~  347 (365)
                                 +|.|+..|.++|.|.  |..|.|.+
T Consensus       311 ~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~  346 (731)
T 2v5y_A          311 QPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSP  346 (731)
T ss_dssp             EECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCB
T ss_pred             eccCcceEEEeCCCCCCEEEEEEEEEecCCCccccC
Confidence                       799999999999999  99998763

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.55  E-value=7.2e-14  Score=126.49  Aligned_cols=165  Identities=10%  Similarity=0.106  Sum_probs=107.1

Q ss_pred             eecCCcEEEEEEEEec---CCCCeeEEEeCCeEEeeCC-------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         132 LNEGVDIYFDCHIQAN---PPYKKLIWTHNGITISNNA-------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~~---p~~~~i~W~~~~~~l~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      +.+|+.++|.|.+.+.   |.+..|.|++++..+....       ..........|.|..++.+|+|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            6789999999999987   4444699999886653211       01112224579999999999999999999887643


Q ss_pred             C-cccEEE--EEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCC-ceeEEEeCCCCCCCCCC-ceeEe
Q psy3823         202 G-STPFDL--NINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSDTAPRPL-TSYSI  276 (365)
Q Consensus       202 ~-s~~~~l--~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~W~~~~~~~~~~~~-~~~~~  276 (365)
                      . ...+.+  .+.          .+|.+........ ...|+.++|.|.+.+++++ ..+.|+++|........ .....
T Consensus       260 ~~~~~v~~~~~~~----------~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~  328 (376)
T 2aty_A          260 PIEKTISKTKGRP----------KAPQLYTIPPPKE-QMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMN  328 (376)
T ss_pred             ceEEEEcCCCCCC----------cCCeEEeeCCCHH-HhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceEC
Confidence            2 111111  222          5666654333222 3458899999999986433 35999999874321111 11123


Q ss_pred             eCCC---EEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         277 QDGS---TSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       277 ~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .+++   .+.|.|.....+|.|.|+|.|.|..-.
T Consensus       329 ~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          329 TNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             CCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence            3444   345777777777899999999997643

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.54  E-value=8.5e-14  Score=117.12  Aligned_cols=181  Identities=9%  Similarity=0.033  Sum_probs=103.5

Q ss_pred             cceecCCcEEEEEEEEec--CCCCeeEEEeC--Ce---EEe-eC----------CCCceEEe------eceEEEeeecCC
Q psy3823         130 SVLNEGVDIYFDCHIQAN--PPYKKLIWTHN--GI---TIS-NN----------ASAGRIIT------NQTLVLQSVTRH  185 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~--p~~~~i~W~~~--~~---~l~-~~----------~~~~~~~~------~~~l~i~~~~~~  185 (365)
                      ..+.+|++++|.|.+.+.  +... +.|++.  +.   .+. ..          ...+....      +.+|.|.+++..
T Consensus        11 v~~~~G~~v~L~C~~~~~~~~~~~-v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (230)
T 1ypz_F           11 ISRPRDETAQISCKVFIESFRSVT-IHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE   89 (230)
T ss_dssp             EEEETTSCEEEEEEECCGGGGGCC-EEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred             EEEeCCCcEEEEEEeeccccCccE-EEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChh
Confidence            357899999999999864  3444 999973  21   111 00          11122221      237999999999


Q ss_pred             CCeEEEEEEEcC--CC-CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEe
Q psy3823         186 SGGLYACSAINS--QG-EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAF  261 (365)
Q Consensus       186 d~G~Y~C~~~~~--~~-~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~  261 (365)
                      |+|.|.|.+.+.  .. ......+.|.|..... -+....+|...........+..|+.++|.|.+.+. |.+..+.|++
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~-~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~  168 (230)
T 1ypz_F           90 DEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDK-RLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYWKE  168 (230)
T ss_dssp             GCSEEEEEECCTTTCCCCEECSCEEEEEECCCT-TCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEEEC
T ss_pred             hCEEEEEEEECCCCCcccccCCCEEEEEecccc-cCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEEEc
Confidence            999999999875  11 1112345677751000 00000012211111111114568899999999986 6542499999


Q ss_pred             -CCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         262 -NNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       262 -~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                       +|..............++.   .+.|.|..... + |.|+|.|.|..+.......+
T Consensus       169 ~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~~~~~~  223 (230)
T 1ypz_F          169 KDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGGADQAI  223 (230)
T ss_dssp             TTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTTSCEEE
T ss_pred             cCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCceeEee
Confidence             6653321111111123332   35688887765 4 99999999988765444333

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.54  E-value=6.3e-14  Score=119.71  Aligned_cols=173  Identities=13%  Similarity=0.115  Sum_probs=102.7

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEe--CCeE---EeeCCC----------C-ceEEe-ece--EEEeeecCCCCeEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTH--NGIT---ISNNAS----------A-GRIIT-NQT--LVLQSVTRHSGGLY  190 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~--~~~~---l~~~~~----------~-~~~~~-~~~--l~i~~~~~~d~G~Y  190 (365)
                      ..+.+|++++|.|.+.+.+.+. +.|++  .+..   +.....          . +.... +..  |.|.+++..|+|.|
T Consensus        11 v~v~~G~~v~L~C~~~~~~~~~-v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG~Y   89 (253)
T 3to4_D           11 RLVPRGQAVNLRCILKNSQYPW-MSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTL   89 (253)
T ss_dssp             EEEESSCCEEEEEECSCTTCCC-EEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCEEE
T ss_pred             EEEeCCCcEEEEEEeCCCCcce-EEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCeEE
Confidence            4678999999999988777766 99997  1211   110000          0 11111 111  99999999999999


Q ss_pred             EEEEEcCCCC-----CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEee-eCCCceeEEEeCCC
Q psy3823         191 ACSAINSQGE-----GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNS  264 (365)
Q Consensus       191 ~C~~~~~~~~-----~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~  264 (365)
                      .|.+.+..+.     .......|.|...    .....+|.+.........+..|+.++|.|.+.+ .|++..+.|+++|.
T Consensus        90 ~C~~~~~~~~~~~~~~~~~~t~l~V~~~----~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~  165 (253)
T 3to4_D           90 YCTSSADHWTNTGQLYFGEGSKLTVLED----LKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK  165 (253)
T ss_dssp             EEEEECSCCSTTCCEEECCCEEEEEESC----STTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             EEEEecCCCCcccceEECCCEEEEEecC----CCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCE
Confidence            9999876431     1113345666510    000133443322211111345789999999998 55552499999876


Q ss_pred             CCCCCCCcee--Ee-----eCCCE---EEEEEcCCCccc-CeEEEEEEEcCCcc
Q psy3823         265 DTAPRPLTSY--SI-----QDGST---SVARYTPTSELE-YGTLLCWARNEQGS  307 (365)
Q Consensus       265 ~~~~~~~~~~--~~-----~~~~~---s~l~i~~v~~~d-~G~Y~C~a~n~~g~  307 (365)
                      ..........  ..     .++..   +.|.|.....+| .|.|+|.|.|..-.
T Consensus       166 ~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~  219 (253)
T 3to4_D          166 EVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (253)
T ss_dssp             EECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             ECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence            4322111000  00     23433   567888777777 77999999997543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.54  E-value=1.2e-13  Score=116.74  Aligned_cols=172  Identities=15%  Similarity=0.194  Sum_probs=101.6

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCC--eE---Ee---e-------CCCCceEE-----eeceEEEeeecCCCCeE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNG--IT---IS---N-------NASAGRII-----TNQTLVLQSVTRHSGGL  189 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~--~~---l~---~-------~~~~~~~~-----~~~~l~i~~~~~~d~G~  189 (365)
                      ..+.+|++++|.|.+.. +.+. +.|++++  ..   +.   .       ....+...     .+.+|.|.+++..|+|.
T Consensus         9 v~v~~G~~v~L~C~~~~-~~~~-v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~   86 (238)
T 1bec_A            9 KVAVTGGKVTLSCQQTN-NHNN-MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSV   86 (238)
T ss_dssp             EEEETTCCEEEEEEESS-CCSE-EEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEE
T ss_pred             eEEeCCCcEEEEEEeCC-CCce-EEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEE
Confidence            46789999999999853 4444 9999842  21   10   0       00112221     13589999999999999


Q ss_pred             EEEEEEcCCCC----CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEeCCC
Q psy3823         190 YACSAINSQGE----GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNS  264 (365)
Q Consensus       190 Y~C~~~~~~~~----~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~  264 (365)
                      |.|.+.+..+.    .......|.|....    ....+|.+.........+..|+.++|.|.+.+. |.+..+.|+++|.
T Consensus        87 Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~----~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~  162 (238)
T 1bec_A           87 YFCASGGGRGSYAEQFFGPGTRLTVLEDL----RQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGK  162 (238)
T ss_dssp             EEEEEESCTTCGGGCEECCCEEEEEESCG----GGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTE
T ss_pred             EEEEEecCCCCccccccCCCEEEEEeccC----CCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCE
Confidence            99999987421    11233567776100    001245544322222225679999999999986 6552499999886


Q ss_pred             CCCCCCC---ceeEeeCCCE---EEEEEcCCCccc-CeEEEEEEEcCCcc
Q psy3823         265 DTAPRPL---TSYSIQDGST---SVARYTPTSELE-YGTLLCWARNEQGS  307 (365)
Q Consensus       265 ~~~~~~~---~~~~~~~~~~---s~l~i~~v~~~d-~G~Y~C~a~n~~g~  307 (365)
                      .......   ......++..   +.|.|......| .|.|+|.|.|....
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  212 (238)
T 1bec_A          163 EVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLS  212 (238)
T ss_dssp             EECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCC
T ss_pred             ECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCC
Confidence            4332211   0111234432   334454444434 67899999997543

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.54  E-value=4.5e-14  Score=120.21  Aligned_cols=171  Identities=13%  Similarity=0.121  Sum_probs=104.1

Q ss_pred             ceEEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCcC----C-----CC---------CCceeE--ecCCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSGT----A-----PR---------PLTSYS--IQDGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~~----l-----~~---------~~~~~~--~~~~~~~~l~i~~   76 (365)
                      +....+.+|++++|.|...+  .+.. .+.|||.....    +     ..         ..+...  ........|.|.+
T Consensus         6 ~~~v~v~~G~~v~L~C~~s~~~~~~~-~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   84 (248)
T 3u2s_H            6 SGGGVVQPGSSLRLSCAASGFDFSRQ-GMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNS   84 (248)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCEEEeCCCCEEEEEEeccccCCcc-EEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence            45577899999999999543  2344 89999853210    0     00         011111  1123455799999


Q ss_pred             CCCCCCeEEEEEEEeCC----------------------CCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceec
Q psy3823          77 TSELEYGTLLCWARNEQ----------------------GNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNE  134 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~----------------------~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  134 (365)
                      ++.+|+|.|.|.+.+..                      ........|+|..     .+..+|.+......    ..+..
T Consensus        85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~-----~~~~~P~v~~~~~~----~~~~~  155 (248)
T 3u2s_H           85 LRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSS-----ASTKGPSVFPLAPS----SKSTS  155 (248)
T ss_dssp             CCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECS-----CCCBCCEEEEECCC---------
T ss_pred             CCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcc-----cCCCCCEEEEeCCC----ccccC
Confidence            99999999999998642                      1111446677731     11245665543322    23457


Q ss_pred             CCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeC------CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         135 GVDIYFDCHIQA-NPPYKKLIWTHNGITISNN------ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       135 g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      |+.++|.|.+.+ .|.+..+.|++++..+...      ...+.....+.|.|.....++ |.|+|.+.|..+.
T Consensus       156 g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~  227 (248)
T 3u2s_H          156 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  227 (248)
T ss_dssp             -CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGT
T ss_pred             CCcEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCC
Confidence            999999999997 4545568999988532110      111222224568888888888 9999999998653

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.53  E-value=1.1e-13  Score=114.48  Aligned_cols=163  Identities=15%  Similarity=0.113  Sum_probs=101.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-CC----------CCCceeEecC---CeEEEEEEccCCCCCCeE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-AP----------RPLTSYSIQD---GSTSVARYTPTSELEYGT   84 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l~----------~~~~~~~~~~---~~~~~l~i~~~~~~d~G~   84 (365)
                      +..+.+.+|++++|.|...+.+ + .+.|+|..... +.          ...+.....+   .....|.|.+++.+|+|.
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~-~-~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~   85 (207)
T 1ypz_E            8 PSALSLHEGTDSALRCNFTTTM-R-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGT   85 (207)
T ss_dssp             CSEEEEETTCCEEEEEEESSCC-S-EEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEE
T ss_pred             CCeEEEccCCcEEEEEEEeCCC-e-EEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEE
Confidence            4567889999999999976543 5 79999964310 10          0111112222   345689999999999999


Q ss_pred             EEEEEEeCCC---------CC--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCe
Q psy3823          85 LLCWARNEQG---------NQ--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKK  152 (365)
Q Consensus        85 Y~C~a~~~~~---------~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~  152 (365)
                      |.|.+.+..+         ..  .....|+|.....   +..+|.+.+.           . ..++|.|.+.+. |.+..
T Consensus        86 Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~---~~~~P~v~~~-----------~-~~~~l~C~~~g~~P~~~~  150 (207)
T 1ypz_E           86 YFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQ---PPAKPSVFIM-----------K-NGTNVACLVKDFYPKEVT  150 (207)
T ss_dssp             EEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCC---CCCCCEEEEE-----------E-ETTEEEEEEEEESSSCCE
T ss_pred             EEEEEecCCcccccccccceeeecCccEEEEccCCC---CCCCCeEEEe-----------C-CCCeEEEEEeeEeCCCeE
Confidence            9999987642         11  1346788842100   0124443321           1 136999999975 44345


Q ss_pred             eEEEeCCeEEeeCCCCceEEeeceEEEeeecC-CCCeEEEEEEEcCCC
Q psy3823         153 LIWTHNGITISNNASAGRIITNQTLVLQSVTR-HSGGLYACSAINSQG  199 (365)
Q Consensus       153 i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~  199 (365)
                      +.|+++ ..+...........++.+.+..... ++.|.|+|.+.|..+
T Consensus       151 v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~  197 (207)
T 1ypz_E          151 ISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSE  197 (207)
T ss_dssp             EEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTE
T ss_pred             EEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCc
Confidence            999999 7775432211112345566655444 678999999998765

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.53  E-value=2.6e-15  Score=124.96  Aligned_cols=179  Identities=13%  Similarity=0.132  Sum_probs=106.1

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCC--CCeeEEEeCCeEEeeC-------CCCceEEeeceEEEeeecCCC
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPP--YKKLIWTHNGITISNN-------ASAGRIITNQTLVLQSVTRHS  186 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~~i~W~~~~~~l~~~-------~~~~~~~~~~~l~i~~~~~~d  186 (365)
                      +|.+.+...   ....+.+|++++|.|.+.+.++  +..|.| + +..+...       ...+.......|.|.++...|
T Consensus         3 ~p~v~~~~P---~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D   77 (214)
T 1ow0_A            3 HPRLSLHRP---ALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNH   77 (214)
T ss_dssp             CCCCEEECC---CHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHH
T ss_pred             CCEEEEECc---ChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCC
Confidence            444444432   2245789999999999998754  234999 4 3333210       000111134568888888899


Q ss_pred             CeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC-CceeEEEeCCCC
Q psy3823         187 GGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ-AQYFTWAFNNSD  265 (365)
Q Consensus       187 ~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~~W~~~~~~  265 (365)
                      +|.|+|.+.|..+... ....+.+.       ....+|.+.........+..|+.++|.|.+.|.++ +..+.|+++|..
T Consensus        78 ~g~Y~C~~~~~~~~~~-~~~~i~~~-------~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~  149 (214)
T 1ow0_A           78 GKTFTCTAAYPESKTP-LTATLSKS-------GNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQE  149 (214)
T ss_dssp             TCEEEEEECCSSCSSC-EEEEEECC-------SSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEE
T ss_pred             CCeEEEEEecCCCCCc-eeEeeccC-------CCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEE
Confidence            9999999998876432 12223211       11156665432222122567899999999998644 324999999864


Q ss_pred             CCCCC---CceeEe---eCCCE---EEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         266 TAPRP---LTSYSI---QDGST---SVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       266 ~~~~~---~~~~~~---~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .....   ......   .+++.   +.|.+.....++.|.|+|.|.|....
T Consensus       150 l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          150 LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             CCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             CCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            33221   011223   44543   33455554445689999999998654

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.53  E-value=3.2e-14  Score=119.89  Aligned_cols=178  Identities=10%  Similarity=0.164  Sum_probs=103.6

Q ss_pred             cceecCCcEEEEEEEEecC--CCCee--EEEeC--Ce---EEe----eCC----------CCceEEe------eceEEEe
Q psy3823         130 SVLNEGVDIYFDCHIQANP--PYKKL--IWTHN--GI---TIS----NNA----------SAGRIIT------NQTLVLQ  180 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p--~~~~i--~W~~~--~~---~l~----~~~----------~~~~~~~------~~~l~i~  180 (365)
                      ..+.+|++|+|.|.+.+.+  ... +  .|++.  +.   .+.    ...          ..+....      +.+|.|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~-i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   88 (232)
T 3qhz_H           10 ALVKPTQTLTLTCSFSGFSLSTSG-MSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMT   88 (232)
T ss_dssp             SEECTTSCEEEEEEEESCGGGCTT-CEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EEECCCCcEEEEEEEeCcccccce-eEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEEC
Confidence            3578999999999997632  233 6  99972  11   110    000          0122222      2369999


Q ss_pred             eecCCCCeEEEEEEEcCCC-------CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC
Q psy3823         181 SVTRHSGGLYACSAINSQG-------EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ  253 (365)
Q Consensus       181 ~~~~~d~G~Y~C~~~~~~~-------~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  253 (365)
                      +++..|+|.|.|.+.+..+       ........|.|..      .....|.+....... .+..|+.++|.|.+.+.++
T Consensus        89 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~------~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~~~~P  161 (232)
T 3qhz_H           89 NMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSS------ASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFP  161 (232)
T ss_dssp             SCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECS------SCCBCCEEEEECC--------CEEEEEEEEEEEBS
T ss_pred             cCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEec------CCCCCCEEEEecccc-cccCCCcEEEEEEEeeEeC
Confidence            9999999999999997631       1122334566641      001345444222111 1557999999999998654


Q ss_pred             Cc-eeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         254 AQ-YFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       254 ~~-~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      +. .+.|++++..............++.   .+.|.|.+....| |.|+|.|.|..+.......|.+
T Consensus       162 ~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          162 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             SCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             CCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            33 4789998753211111111122332   2468898888888 9999999999877655555443

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.52  E-value=4.6e-14  Score=102.16  Aligned_cols=86  Identities=12%  Similarity=0.127  Sum_probs=71.9

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc--eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT--SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ..+....+.+|+.+.|.|.+.+.|.+ .++|++++.. +.....  ......+...+|.|.+++.+|+|.|+|.|.|..|
T Consensus        10 ~~p~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~-i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   87 (100)
T 3knb_A           10 ALPSDISIDEGKVLTVACAFTGEPTP-EVTWSCGGRK-IHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFG   87 (100)
T ss_dssp             CCCSEEEEETTSEEEEEEEEEEESCC-EEEEEETTEE-CCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             eCCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECceE-eeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCC
Confidence            44567788999999999998899999 9999999988 654432  2333455567899999999999999999999999


Q ss_pred             CCcccEEEEE
Q psy3823          95 NQRTPCTFHV  104 (365)
Q Consensus        95 ~~~~~~~l~V  104 (365)
                      .....+.|.|
T Consensus        88 ~~~~~~~l~V   97 (100)
T 3knb_A           88 SDSATVNIHI   97 (100)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8888888887

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.52  E-value=3.1e-13  Score=108.39  Aligned_cols=157  Identities=14%  Similarity=0.238  Sum_probs=104.9

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeE-ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      +....|.+|+++.|.|.+.. +.+..+.|...    +..   ... ........|.|.+++. | |.|.|.+........
T Consensus         6 P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~----l~~---~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~   75 (185)
T 1iam_A            6 PSKVILPRGGSVLVTCSTSC-DQPKLLGIETP----LPK---KELLLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQST   75 (185)
T ss_dssp             SSEEEEETTEEEEEEEEECS-SSCSEEEEECS----SCE---EEECSSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEE
T ss_pred             CCCcEEeCCCCEEEEEEccC-CCCccceEEee----CCC---ccEeccCCceeEEEEEecCc-C-CEEEEEEECCCCceE
Confidence            34466899999999999754 55525777532    111   011 1122334689999984 4 899999865544445


Q ss_pred             ccEEEEEEeccccCCCCCCCe-EEEEcCCccCccceecCCcEEEEEEEEecCCCC--eeEEEeCCeEEeeCCCCceEEee
Q psy3823          98 TPCTFHVVKAGECEHPVDKPS-VQIKLGRNLNASVLNEGVDIYFDCHIQANPPYK--KLIWTHNGITISNNASAGRIITN  174 (365)
Q Consensus        98 ~~~~l~V~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~--~i~W~~~~~~l~~~~~~~~~~~~  174 (365)
                      ..+.|+|         +.+|. +.+.+.+    ..+.+|+.++|.|.+.+..++.  .|.||+++..+...... ....+
T Consensus        76 ~~~~l~V---------~~~P~~v~i~~~~----~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~-~~~~~  141 (185)
T 1iam_A           76 AKTFLTV---------YWTPERVELAPLP----SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV-GEPAE  141 (185)
T ss_dssp             EECEEEE---------EBCCSEEEECCCC----SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC-TTTEE
T ss_pred             EEEEEEE---------eCCCCCCEEccCC----ccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCC-Ccccc
Confidence            8888998         55554 4454422    2488999999999999855543  37999999988642211 01123


Q ss_pred             ceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         175 QTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       175 ~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      .+|.+.....+|...|+|+|.+..+
T Consensus       142 ~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          142 VTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             EEEEEeceeccCCCeEEEEEEecCc
Confidence            3577776666777799999998876

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.52  E-value=1.5e-13  Score=115.60  Aligned_cols=168  Identities=14%  Similarity=0.150  Sum_probs=104.7

Q ss_pred             eEEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCc----CC---CC-----------CCceeE--ecCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSG----TA---PR-----------PLTSYS--IQDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~----~l---~~-----------~~~~~~--~~~~~~~~l~i~~~   77 (365)
                      ....+.+|+.++|.|...+  .+.. .+.|||....    .+   ..           ..+...  ........|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (230)
T 3n9g_H            8 GAEVRKPGASTKVSCKASGYTFTHY-YMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL   86 (230)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEcCCCCEEEEEEeecceecCc-EEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            3467899999999999543  2334 8999985321    00   00           011111  12234557999999


Q ss_pred             CCCCCeEEEEEEEeCCC-----CC---cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-C
Q psy3823          78 SELEYGTLLCWARNEQG-----NQ---RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-P  148 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~-----~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p  148 (365)
                      +.+|+|.|.|.+.+..+     ..   .....|.|..     .+..+|.+......    ..+.+|+.++|.|.+.+. |
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~-----~~~~~P~v~~~~~~----~~~~~g~~v~L~C~~~~~~P  157 (230)
T 3n9g_H           87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSS-----ASTKGPSVFPLAPS----SKSTSGGTAALGCLVKDYFP  157 (230)
T ss_dssp             CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECS-----SCCBCCEEEEECCC----CCCCTTCEEEEEEEEEEEBS
T ss_pred             ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEe-----cCCCCCEEEecCCC----ccccCCCCEEEEEEEEeEEC
Confidence            99999999999987541     11   1445677721     11235655533321    235689999999999974 4


Q ss_pred             CCCeeEEEeCCeEEeeC--------CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         149 PYKKLIWTHNGITISNN--------ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       149 ~~~~i~W~~~~~~l~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .+..+.|  ++..+...        ...+.....+.|.|.....+| |.|+|.+.|..+.
T Consensus       158 ~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~  214 (230)
T 3n9g_H          158 EPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (230)
T ss_dssp             SCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGT
T ss_pred             CCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCC
Confidence            3556899  55443210        011122223578899888889 9999999998754

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.52  E-value=5.2e-15  Score=128.16  Aligned_cols=187  Identities=11%  Similarity=0.106  Sum_probs=65.8

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEeC-CCCCcc-eEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCC
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVD-ANPQAQ-YFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~-~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      +.+.+.+.|...........+.+|+.++|.|.+. +.|.+. .++|+|++.. +.....   ........|.+.....+|
T Consensus        78 v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~-l~~~~~---~~~~~~~~l~~~~~~~D~  153 (291)
T 1mq8_A           78 TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE-LKREPA---VGEPAEVTTTVLVRRDHH  153 (291)
T ss_dssp             CEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSE-EEEEEC---CBTTEEEEEECCCSSSCS
T ss_pred             EEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEE-eecccC---CCCCceEEEEeeeeeccC
Confidence            3455666676655544444478999999999944 455542 5899999987 543221   112233578888888888


Q ss_pred             CeEEEEEEEeCCCC--------CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCC--C
Q psy3823          82 YGTLLCWARNEQGN--------QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPY--K  151 (365)
Q Consensus        82 ~G~Y~C~a~~~~~~--------~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~--~  151 (365)
                      .+.|+|.|.+..+.        ......|.|         +++|........  + ..+.+|+.++|.|.+.|.+++  .
T Consensus       154 g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V---------~~~P~~~~~~~~--p-~~l~eG~~v~l~C~~~g~~P~~~~  221 (291)
T 1mq8_A          154 GANFSCRTELDLRPQGLELFENTSAPYQLQT---------FVLPATPPQLVS--P-RVLEVDTQGTVVCSLDGLFPVSEA  221 (291)
T ss_dssp             SCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------------------------------
T ss_pred             CceEEEEEEecCCccCCccccccccceEEEE---------EecCCCCceecC--C-cCccCCCeEEEEEEcCCCCCCccc
Confidence            89999999987552        236677777         566532222111  1 257799999999999997665  2


Q ss_pred             eeEEEeCCeEEeeCCCCceEEeeceEEEeee---cC--CCCeEEEEEEEcCCCCCCcccEEEEEe
Q psy3823         152 KLIWTHNGITISNNASAGRIITNQTLVLQSV---TR--HSGGLYACSAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       152 ~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~---~~--~d~G~Y~C~~~~~~~~~~s~~~~l~v~  211 (365)
                      .+.|+++|..+....    ......+.+...   ++  ++++.|+|.+.+...... ....|.|.
T Consensus       222 ~v~w~~~g~~l~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~-~~~~l~v~  281 (291)
T 1mq8_A          222 QVHLALGDQRLNPTV----TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE-TLQTVTIY  281 (291)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             EEEEEECCEecCcee----eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceE-EEEEEEEE
Confidence            488999998886421    112223333322   23  345777888886443333 44566665

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.51  E-value=2.1e-13  Score=101.30  Aligned_cols=89  Identities=12%  Similarity=0.035  Sum_probs=73.8

Q ss_pred             eeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          15 KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        15 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      +...+....+.+|+.+.|.|.+.+.|.+ .++|+|++.. +................|.|.+++.+|+|.|+|.|.|..|
T Consensus        10 i~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g   87 (114)
T 2cqv_A           10 IIQFPEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQ-IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   87 (114)
T ss_dssp             ESCCCCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSB-CCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             EEeCCCCeEEeCCCeEEEEEEEEcCCCC-EEEEEECCEE-CcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCC
Confidence            3345566778999999999998889999 9999999988 7655444444444466899999999999999999999999


Q ss_pred             CCcccEEEEEE
Q psy3823          95 NQRTPCTFHVV  105 (365)
Q Consensus        95 ~~~~~~~l~V~  105 (365)
                      .....+.|.|.
T Consensus        88 ~~~~~~~l~V~   98 (114)
T 2cqv_A           88 SRQAQVNLTVV   98 (114)
T ss_dssp             EEECCEEEEEE
T ss_pred             cEEEEEEEEEE
Confidence            88888999983

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.51  E-value=9.1e-14  Score=117.66  Aligned_cols=178  Identities=13%  Similarity=0.179  Sum_probs=105.4

Q ss_pred             cceecCCcEEEEEEEEecCC---CCeeEEEeC--Ce---EE-eeC----------------CCCceEEe------eceEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPP---YKKLIWTHN--GI---TI-SNN----------------ASAGRIIT------NQTLV  178 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~---~~~i~W~~~--~~---~l-~~~----------------~~~~~~~~------~~~l~  178 (365)
                      ..+.+|++|+|.|.+.+.+.   ...+.|++.  +.   .+ ...                ...+....      ..+|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   89 (239)
T 3tv3_H           10 TLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLK   89 (239)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEE
T ss_pred             EEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEE
Confidence            46789999999999987543   335999972  21   11 010                01112221      23599


Q ss_pred             EeeecCCCCeEEEEEEEcCCCC------------CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEE
Q psy3823         179 LQSVTRHSGGLYACSAINSQGE------------GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSC  246 (365)
Q Consensus       179 i~~~~~~d~G~Y~C~~~~~~~~------------~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C  246 (365)
                      |.+++..|+|.|.|.+.+..+.            .......|.|..      .....|.+........ +..|+.++|.|
T Consensus        90 I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~------~~~~~P~v~~~~~~~~-~~~g~~v~l~C  162 (239)
T 3tv3_H           90 LNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSS------ASTKGPSVFPLAPSSK-STSGGTAALGC  162 (239)
T ss_dssp             ECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECC------CCCBCCEEEEECCCCC-C--TTEEEEEE
T ss_pred             ECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeecc------CCCcCCEEEEECCChh-hccCCcEEEEE
Confidence            9999999999999999865320            111233555541      0013444442222211 45799999999


Q ss_pred             EEeee-CCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         247 TVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       247 ~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      .+.+. |.+..+.|++++..............++.   .+.|.|.....+| |.|+|.|.|..+.......|.
T Consensus       163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  234 (239)
T 3tv3_H          163 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  234 (239)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEec
Confidence            99885 43435889998753211111111122333   2468888888888 999999999887665444443

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.50  E-value=2.9e-13  Score=113.85  Aligned_cols=178  Identities=13%  Similarity=0.140  Sum_probs=105.8

Q ss_pred             cceecCCcEEEEEEEEec-CCCCeeEEEeC--Ce---EE-eeCC-----------CCceEEe------eceEEEeeecCC
Q psy3823         130 SVLNEGVDIYFDCHIQAN-PPYKKLIWTHN--GI---TI-SNNA-----------SAGRIIT------NQTLVLQSVTRH  185 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~--~~---~l-~~~~-----------~~~~~~~------~~~l~i~~~~~~  185 (365)
                      ..+.+|++|+|.|.+.+. .....+.||+.  +.   .+ ....           ..+....      ..+|.|.+++..
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (230)
T 3n9g_H           10 EVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSE   89 (230)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChh
Confidence            357899999999999752 12233999972  21   11 0000           1122221      224999999999


Q ss_pred             CCeEEEEEEEcCCC-----C--CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC-Ccee
Q psy3823         186 SGGLYACSAINSQG-----E--GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ-AQYF  257 (365)
Q Consensus       186 d~G~Y~C~~~~~~~-----~--~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~  257 (365)
                      |+|.|.|.+.+..+     .  .......|.|..      ....+|.+........ +..|+.++|.|.+.+.++ +..+
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~------~~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~~~~P~~~~v  162 (230)
T 3n9g_H           90 DTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSS------ASTKGPSVFPLAPSSK-STSGGTAALGCLVKDYFPEPVTV  162 (230)
T ss_dssp             GCEEEEEEEECCCSSSTTCCEEEECCCEEEEECS------SCCBCCEEEEECCCCC-CCTTCEEEEEEEEEEEBSSCCEE
T ss_pred             hCEEEEEEEccCCCCcccccccccCCCEEEEEEe------cCCCCCEEEecCCCcc-ccCCCCEEEEEEEEeEECCCEEE
Confidence            99999999987541     1  112334566641      0013444432121111 468999999999988543 3358


Q ss_pred             EEEeCCCCCCCCCCc--eeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         258 TWAFNNSDTAPRPLT--SYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       258 ~W~~~~~~~~~~~~~--~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      .|  ++.........  .....++.   .+.|.|.....+| |.|+|.|.|..+.......|.|.
T Consensus       163 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          163 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence            89  54433211111  11122332   3478999999999 99999999988776555555443

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.49  E-value=2.9e-13  Score=97.73  Aligned_cols=94  Identities=11%  Similarity=0.080  Sum_probs=72.5

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +|.+...... ..+..|+.+.|.|.+.|.|.+. +.|+++|...............+..+.|.|.+++.+|+|.|+|.|.
T Consensus         5 ~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p~-v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (99)
T 1g1c_A            5 APKIFERIQS-QTVGQGSDAHFRVRVVGKPDPE-CEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   82 (99)
T ss_dssp             EEEEEECCCC-EEEETTSCEEEEEEEEEESCCE-EEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCceEecCcc-eEEcCCCcEEEEEEEEEeCCCE-EEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEE
Confidence            4445443333 3388999999999999999998 9999998754433222222334556789999999999999999999


Q ss_pred             cCCccceecEEEEEEc
Q psy3823         303 NEQGSQRTPCTFHVVK  318 (365)
Q Consensus       303 n~~g~~~~~~~l~v~~  318 (365)
                      |..|.....+.|.|..
T Consensus        83 N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           83 NIAGETSSHAFLLVQA   98 (99)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCcEEEEEEEEEec
Confidence            9999999888888764

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.49  E-value=2.2e-13  Score=98.40  Aligned_cols=94  Identities=20%  Similarity=0.272  Sum_probs=73.8

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +|.+...+... .+..|+.+.|.|.+.+.|.+. +.|++++..............++..+.|.|.+++.+|+|.|+|.|.
T Consensus         5 ~P~~~~~~~~~-~v~~G~~v~l~C~~~g~p~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (99)
T 1u2h_A            5 PPTFKVSLMDQ-SVREGQDVIMSIRVQGEPKPV-VSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAV   82 (99)
T ss_dssp             EEEEEECCCCE-EEETTCCEEEEEEEEEESCCE-EEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEcCCce-EecCCCEEEEEEEEEEcCCCE-EEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEE
Confidence            44454433333 388999999999999999998 9999998755443333444455666789999999999999999999


Q ss_pred             cCCccceecEEEEEEc
Q psy3823         303 NEQGSQRTPCTFHVVK  318 (365)
Q Consensus       303 n~~g~~~~~~~l~v~~  318 (365)
                      |..|..+..+.|.|..
T Consensus        83 N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           83 NEYGARQCEARLEVRG   98 (99)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCceeEEEEEEEEC
Confidence            9999998888888763

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.48  E-value=2.4e-13  Score=98.39  Aligned_cols=96  Identities=14%  Similarity=0.229  Sum_probs=73.4

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+...+.. ..+..|+.+.|.|.+.+.|.+. +.|+++|..................+.|.|.+++.+|+|.|+|.|
T Consensus         4 ~~P~~~~~p~~-~~~~~G~~~~l~C~~~g~p~p~-v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (100)
T 2kdg_A            4 GPPRFIQVPEN-MSIDEGRFCRMDFKVSGLPAPD-VSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVA   81 (100)
T ss_dssp             EEEECCCCCCC-EEEETTCCEEEEEECEEESCCE-EEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEeCCCC-EEecCCCEEEEEEEEEeeCCCE-EEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence            34444443333 3388999999999999999998 999998865443332223334445567999999999999999999


Q ss_pred             EcCCccceecEEEEEEcC
Q psy3823         302 RNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~~~  319 (365)
                      .|..|..+.++.|.|...
T Consensus        82 ~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           82 KNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EcCCCeEEEEEEEEEEec
Confidence            999999999999988754

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.48  E-value=3e-13  Score=96.50  Aligned_cols=90  Identities=14%  Similarity=0.152  Sum_probs=69.5

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCC--CCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNN--SDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~--~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      +|.+..... ...+..|+.+.|.|.+.|.|.|. +.|++++  ......   .........+.|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~~~~~-~~~v~~G~~~~l~C~~~g~P~p~-i~W~k~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   76 (93)
T 1wit_A            2 KPKILTASR-KIKIKAGFTHNLEVDFIGAPDPT-ATWTVGDSGAALAPE---LLVDAKSSTTSIFFPSAKRADSGNYKLK   76 (93)
T ss_dssp             CCEECCCCC-EEEECTTBCCEEEEEEECCSSCE-EEEECSTTTCBCSTT---SEEEEETTEEEEECTTBCGGGCEEEEEE
T ss_pred             CCeEEcCCC-ceEEeCCCEEEEEEEEEEcCCCE-EEEEECCCCcccCCc---EEEEecCCEEEEEECCCChhcCEEEEEE
Confidence            355543333 34488999999999999999998 9999998  433221   2223334567899999999999999999


Q ss_pred             EEcCCccceecEEEEEE
Q psy3823         301 ARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       301 a~n~~g~~~~~~~l~v~  317 (365)
                      |.|..|..+..+.|.|+
T Consensus        77 a~N~~G~~~~~~~l~V~   93 (93)
T 1wit_A           77 VKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEETTEEEEEEEEEEEC
T ss_pred             EEcCCCeEEEEEEEEEC
Confidence            99999999888888763

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.48  E-value=8.5e-13  Score=97.98  Aligned_cols=95  Identities=15%  Similarity=0.096  Sum_probs=76.0

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+...+.. ..+..|+.+.|.|.+.+.|.+. +.|++++..... ..+..+........|.|.+++.+|+|.|+|.|
T Consensus         6 ~pp~i~~~~~~-~~v~~G~~v~l~C~~~g~p~p~-i~W~k~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (114)
T 2cqv_A            6 SGPQIIQFPED-QKVRAGESVELFGKVTGTQPIT-CTWMKFRKQIQE-SEHMKVENSENGSKLTILAARQEHCGCYTLLV   82 (114)
T ss_dssp             CCCEESCCCCS-EEEETTCCEEEEEEEESSSSCE-EEEEESSSBCCC-SSSEEEEECSSEEEEEETTCCTTTCEEEEEEE
T ss_pred             CCCEEEeCCCC-eEEeCCCeEEEEEEEEcCCCCE-EEEEECCEECcC-CCCEEEEEcCCEEEEEECCCChhcCEEEEEEE
Confidence            45666544433 3489999999999999999998 999999875432 33445555555778999999999999999999


Q ss_pred             EcCCccceecEEEEEEcC
Q psy3823         302 RNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~~~  319 (365)
                      .|..|..+..+.|.|...
T Consensus        83 ~N~~g~~~~~~~l~V~~~  100 (114)
T 2cqv_A           83 ENKLGSRQAQVNLTVVDK  100 (114)
T ss_dssp             ECSSCEEECCEEEEEECS
T ss_pred             EECCCcEEEEEEEEEECC
Confidence            999999999999998744

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.47  E-value=4.8e-13  Score=97.32  Aligned_cols=95  Identities=13%  Similarity=0.110  Sum_probs=75.8

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+...... ..+..|+.+.|.|.+.+.|.|. +.|++++..... ..+..+..++....|.|.+++.+|+|.|+|.|
T Consensus         7 ~~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p~-i~W~k~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   83 (103)
T 3qp3_A            7 HAPRITLRMRS-HRVPCGQNTRFILNVQSKPTAE-VKWYHNGVELQE-SSKIHYTNTSGVLTLEILDCHTDDSGTYRAVC   83 (103)
T ss_dssp             EEEEEEECCCC-EEEETTCCEEEEEEEEEESCCE-EEEEETTEECCC-CSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEeCCcc-eEEeCCCeEEEEEEEEecCCCE-EEEEECCEECCC-CCCEEEEECCCEEEEEEcCCCcccCEEEEEEE
Confidence            45555544433 3388999999999999999998 999999874433 34455555666778999999999999999999


Q ss_pred             EcCCccceecEEEEEEcC
Q psy3823         302 RNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~~~  319 (365)
                      .|..|..+..+.|.|...
T Consensus        84 ~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           84 TNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EeCCCcEEEEEEEEEECC
Confidence            999999999989888754

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.47  E-value=2.6e-13  Score=115.43  Aligned_cols=177  Identities=12%  Similarity=0.182  Sum_probs=101.7

Q ss_pred             cceecCCcEEEEEEEEec-CCCCeeEEEeC--CeEE--e--eC-----------CCCceEEe------eceEEEeeecCC
Q psy3823         130 SVLNEGVDIYFDCHIQAN-PPYKKLIWTHN--GITI--S--NN-----------ASAGRIIT------NQTLVLQSVTRH  185 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~-p~~~~i~W~~~--~~~l--~--~~-----------~~~~~~~~------~~~l~i~~~~~~  185 (365)
                      ..+.+|++|+|.|.+.+. .....+.|++.  +..+  .  ..           ...+....      ..+|.|.+++.+
T Consensus         9 v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   88 (248)
T 3u2s_H            9 GVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRVE   88 (248)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCHH
Confidence            467899999999999752 22233999972  2111  1  00           01122221      235999999999


Q ss_pred             CCeEEEEEEEcCC---------------------CCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEE
Q psy3823         186 SGGLYACSAINSQ---------------------GEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLV  244 (365)
Q Consensus       186 d~G~Y~C~~~~~~---------------------~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l  244 (365)
                      |+|.|.|.+.+..                     .........|.|..      .....|.+........ +..|+.++|
T Consensus        89 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~------~~~~~P~v~~~~~~~~-~~~g~~~~L  161 (248)
T 3u2s_H           89 DTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSS------ASTKGPSVFPLAPSSK-STSGGTAAL  161 (248)
T ss_dssp             GCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECS------CCCBCCEEEEECCC-------CEEEE
T ss_pred             HCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcc------cCCCCCEEEEeCCCcc-ccCCCcEEE
Confidence            9999999998642                     11111334556541      0113444442222211 456899999


Q ss_pred             EEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         245 SCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       245 ~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      .|.+.+. |.+..+.|++++..............++.   .+.|.|.....+| |.|+|.|.|..+.......|
T Consensus       162 ~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l  234 (248)
T 3u2s_H          162 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  234 (248)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEE
Confidence            9999885 43335999998753211111111122333   3468888888888 99999999987766544433

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.47  E-value=8.2e-13  Score=112.98  Aligned_cols=168  Identities=13%  Similarity=0.136  Sum_probs=101.5

Q ss_pred             eEEEEecCCcEEEEEEeCCC--CCcceEEEEeCCCcC-CC-----------------CCCceeE--ecCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGT-AP-----------------RPLTSYS--IQDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~-l~-----------------~~~~~~~--~~~~~~~~l~i~~~   77 (365)
                      ....+.+|++++|.|...+.  ... .+.|+|..... ..                 ...+...  ........|.|.++
T Consensus        31 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  109 (256)
T 3sob_H           31 GGGLVQPGGSLRLSCAASGFTFTNS-YIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSL  109 (256)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CcEEEcCCCCEEEEEEeeccccCCC-EEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCC
Confidence            34568999999999995432  234 89999853210 00                 0011111  12224456999999


Q ss_pred             CCCCCeEEEEEEEeCCC---------C--CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe
Q psy3823          78 SELEYGTLLCWARNEQG---------N--QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA  146 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~---------~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  146 (365)
                      +.+|+|.|.|.+.+..+         .  ......|.|..     .+..+|.+......    ..+.+|+.++|.|.+.+
T Consensus       110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~-----~~~~~P~i~~~~~~----~~~~~g~~v~L~C~~~~  180 (256)
T 3sob_H          110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSS-----ASTKGPSVFPLAPS----SKSTSGGTAALGCLVKD  180 (256)
T ss_dssp             CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECS-----SCCBCCEEEEECCC---------TTEEEEEEEEEE
T ss_pred             CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEec-----CCCCCCEEEEECCC----cccccCCcEEEEEEEEE
Confidence            99999999999986431         1  11445677731     11345665543322    23568999999999997


Q ss_pred             -cCCCCeeEEEeCCeEEeeC--------CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         147 -NPPYKKLIWTHNGITISNN--------ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       147 -~p~~~~i~W~~~~~~l~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                       .|.+..+.|  ++..+...        ...+.......|.|.....+| |.|+|.+.|..+.
T Consensus       181 ~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~  240 (256)
T 3sob_H          181 YFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  240 (256)
T ss_dssp             EBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred             EECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCC
Confidence             454556899  44433210        011122223578899888889 9999999988754

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.46  E-value=4.6e-12  Score=105.13  Aligned_cols=149  Identities=13%  Similarity=0.192  Sum_probs=102.3

Q ss_pred             cceecCCcEEEEEEEEecCC---CCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCC-ccc
Q psy3823         130 SVLNEGVDIYFDCHIQANPP---YKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGG-STP  205 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~---~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-s~~  205 (365)
                      ..+..|+.++|.|.+.+..+   +..++|++||.++..        ....|.+..+...++|.|+|.+.+..|... +..
T Consensus        12 ~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG--------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~   83 (304)
T 3shs_A           12 RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN--------NTATLTVADATSENAGSYKVTVQDTDTMTSVESE   83 (304)
T ss_dssp             SSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC--------CSSEEEESSCCGGGCEEEEEEEEETTTCCEEECC
T ss_pred             ccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC--------CcceEEeeeccccCCeEEEEEEEECCCCeeeeee
Confidence            46889999999999986533   446999999988653        224788889999999999999999877543 222


Q ss_pred             EEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEE--ee-eCC----CceeEEEeCCCCCCCCCCceeEeeC
Q psy3823         206 FDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTV--DA-NPQ----AQYFTWAFNNSDTAPRPLTSYSIQD  278 (365)
Q Consensus       206 ~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~--~~-~p~----~~~~~W~~~~~~~~~~~~~~~~~~~  278 (365)
                      +.+...          ..+.+....+..+.+..|..+.|.+.+  .| .|+    ...+.|++++...           .
T Consensus        84 VtVT~~----------a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~I-----------s  142 (304)
T 3shs_A           84 VFLMEE----------AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI-----------D  142 (304)
T ss_dssp             CEEECB----------CCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEE-----------E
T ss_pred             EEEecc----------CceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEc-----------c
Confidence            333322          222232222233335667889999887  43 342    1249999987521           1


Q ss_pred             CCEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         279 GSTSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       279 ~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      + ...|.+......++|.|+|.+.|..+..
T Consensus       143 g-Aq~lT~sS~TateaG~YtV~VTn~~~~c  171 (304)
T 3shs_A          143 T-TQDITIQEFTADKNGVYTVKVWGESEDS  171 (304)
T ss_dssp             S-SSEEEECSCCGGGCEEEEEEEESSSGGG
T ss_pred             C-ccccceeeEEecCCeEEEEEEEcCCCCc
Confidence            1 1136777888899999999999998743

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.46  E-value=6e-13  Score=111.58  Aligned_cols=168  Identities=15%  Similarity=0.169  Sum_probs=102.2

Q ss_pred             eEEEEecCCcEEEEEEeCCC--CCcceEEEEeCCCcC-C-------CC----------CCceeE--ecCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGT-A-------PR----------PLTSYS--IQDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~-l-------~~----------~~~~~~--~~~~~~~~l~i~~~   77 (365)
                      ....+.+|+.++|.|...+.  +.. .+.|||..... .       ..          ..+...  ........|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~-~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (226)
T 3mlr_H            8 GGEVKQPGQSLKISCKSSGYNFLDS-WIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL   86 (226)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred             CCEEEecCCCEEEEEEecCccccCC-EEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence            34678999999999995432  234 89999853210 0       00          011111  12224457999999


Q ss_pred             CCCCCeEEEEEEEeCCC-------CC--cccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-c
Q psy3823          78 SELEYGTLLCWARNEQG-------NQ--RTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-N  147 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~-------~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~  147 (365)
                      +.+|+|.|.|.+.+..+       ..  .....|.|..     .+..+|.+.....    ...+.+|+.++|.|.+.+ .
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~-----~~~~~P~i~~~~~----~~~~~~g~~~~l~C~~~~~~  157 (226)
T 3mlr_H           87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSS-----GTTKGPSVFPLAP----SSKSTSGGTAALGCLVKDYF  157 (226)
T ss_dssp             CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECC-----CCCBCCEEEEEEE----EECSTTSSEEEEEEEEEEEB
T ss_pred             CcccCEEEEEeEccCCCcccccchhhhhCCccEEeecc-----CCCCCCcEEEecC----cccccCCCCEEEEEEEEEEE
Confidence            99999999999976421       00  1334566621     1134566553221    123458999999999997 4


Q ss_pred             CCCCeeEEEeCCeEEee--------CCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         148 PPYKKLIWTHNGITISN--------NASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       148 p~~~~i~W~~~~~~l~~--------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      |.+..+.|  ++..+..        ....+.......|.|.....+| |.|+|.+.|..+.
T Consensus       158 p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~  215 (226)
T 3mlr_H          158 PEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  215 (226)
T ss_dssp             SSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred             CCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCC
Confidence            53556999  4332210        0011122223578898888888 9999999997753

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.46  E-value=3.7e-13  Score=114.87  Aligned_cols=174  Identities=13%  Similarity=0.191  Sum_probs=103.4

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCC--e--E-Eee-C---------CCCceEEe-----eceEEEeeecCCCCeE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNG--I--T-ISN-N---------ASAGRIIT-----NQTLVLQSVTRHSGGL  189 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~--~--~-l~~-~---------~~~~~~~~-----~~~l~i~~~~~~d~G~  189 (365)
                      ..+.+|++++|.|.+.. +.+. +.|+++.  .  . +.. .         ...+....     +.+|.|.+++.+|+|.
T Consensus        13 v~v~~G~~v~L~C~~~~-~~~~-v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~   90 (252)
T 1oga_E           13 LFRKEGQNVTLSCEQNL-NHDA-MYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF   90 (252)
T ss_dssp             EEEETTCCEEECCEECS-CCSE-EEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred             EEEcCCCcEEEEEEeCC-CCCE-EEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEE
Confidence            46789999999999853 4444 9999842  1  1 110 0         11122221     3589999999999999


Q ss_pred             EEEEEEcCCC--CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCceeEEEeCCCCC
Q psy3823         190 YACSAINSQG--EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDT  266 (365)
Q Consensus       190 Y~C~~~~~~~--~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~  266 (365)
                      |.|.+.+..+  ........|.|....    ....+|.+.........+..|+.++|.|.+.+. |.+..+.|+++|...
T Consensus        91 Y~C~~~~~~~~~~~~~~~~~l~V~~~~----~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l  166 (252)
T 1oga_E           91 YLCASSSRSSYEQYFGPGTRLTVTEDL----KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  166 (252)
T ss_dssp             EEEEEESSTTSCCEECCCEEEEEESCG----GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             EEEEEecCCccceeECCCEEEEEeccc----CCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEEC
Confidence            9999998621  111123456665100    001345544322121124578999999999986 654249999987643


Q ss_pred             CCCCCce--eE-----eeCCC---EEEEEEcCCCcc-cCeEEEEEEEcCCccce
Q psy3823         267 APRPLTS--YS-----IQDGS---TSVARYTPTSEL-EYGTLLCWARNEQGSQR  309 (365)
Q Consensus       267 ~~~~~~~--~~-----~~~~~---~s~l~i~~v~~~-d~G~Y~C~a~n~~g~~~  309 (365)
                      .......  ..     ..++.   .+.|.|.+.... +.|.|+|.|.|......
T Consensus       167 ~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          167 HSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             CSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             CCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            2211100  00     12333   245777766554 57899999999876543

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.46  E-value=7.8e-13  Score=106.87  Aligned_cols=163  Identities=12%  Similarity=0.126  Sum_probs=106.3

Q ss_pred             eeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          15 KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        15 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ....+....|.+|+++.|.|.+.. +.+..+.|.-.    +..  . ..........+.+.+++ +|.+.|.|.+.....
T Consensus         5 v~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~----l~~--~-~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~   75 (196)
T 3bn3_B            5 ADLQPRVAFVERGGSLWLNCSTNC-PRPERGGLETS----LRR--N-GTQRGLRWLARQLVDIR-EPETQPVCFFRCARR   75 (196)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECC-SSCSEEEEECS----SEE--E-EEEEETTEEEEEEEEEC-SSEECCEEEEEETTE
T ss_pred             EEEcCCCcEEcCCCeEEEEEeCCC-CCCCccEEEEc----cCC--e-eEccccCceEEEEEEEc-cCCCceEEEEECCCC
Confidence            334455567899999999999753 44436777432    111  1 11112222358899998 777779999776544


Q ss_pred             CCcccEEEEEEeccccCCCCCCCe-EEEEcCCccCccceecCCcEEEEEEEEecCCCCe--eEEEeCCeEEeeCCCC---
Q psy3823          95 NQRTPCTFHVVKAGECEHPVDKPS-VQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKK--LIWTHNGITISNNASA---  168 (365)
Q Consensus        95 ~~~~~~~l~V~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~--i~W~~~~~~l~~~~~~---  168 (365)
                      .....+.|+|         +.+|. +.+.+.+    ..+.+|+.++|.|.+.+..+..+  |.|++++..+......   
T Consensus        76 ~~~~~v~l~V---------y~~P~~v~i~~~~----~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~  142 (196)
T 3bn3_B           76 TLQARGLIRT---------FQRPDRVELMPLP----PWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEP  142 (196)
T ss_dssp             EEEEECEEEE---------EBCCCCCEECCCC----SSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSC
T ss_pred             ceEEEEEEEE---------ecCCCcCEEccCC----ccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeecccccccc
Confidence            4458888998         55554 3444322    24789999999999997555544  6999999988632210   


Q ss_pred             -ceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         169 -GRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       169 -~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                       .......++.+.....++...|+|+|.+..+
T Consensus       143 ~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          143 PRARGAVLTATVLARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             TTCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred             ccccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence             1111124566666666777799999998765

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=7.9e-13  Score=95.61  Aligned_cols=93  Identities=15%  Similarity=0.247  Sum_probs=72.8

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+...+... .+..|+.+.|.|.+.+.|.+. +.|++++..............++   .|.|.+++.+|+|.|+|.|
T Consensus         7 ~~P~i~~~p~~~-~v~~G~~~~l~C~~~g~p~p~-v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a   81 (100)
T 2edj_A            7 GPPIILQGPANQ-TLAVDGTALLKCKATGDPLPV-ISWLKEGFTFPGRDPRATIQEQG---TLQIKNLRISDTGTYTCVA   81 (100)
T ss_dssp             SSCEEEECCCCE-EEESSSEEEECCEEECSSCCE-EEEEESSSEESSSCSSCEECTTC---CEEEESCCTTTCCEEEEEE
T ss_pred             CCCEEEeCcCCE-EEcCCCcEEEEEEEEEcCCCE-EEEEECCEECCCCCCCEEEcCCC---EEEEccCCcccCEEEEEEE
Confidence            456665544343 388999999999999999998 99999887544333333333333   4999999999999999999


Q ss_pred             EcCCccceecEEEEEEcC
Q psy3823         302 RNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~~~  319 (365)
                      .|..|..+..+.|.|..+
T Consensus        82 ~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           82 TSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             ECSSCCCBCCEEEEEESC
T ss_pred             EcCCCCEEEEEEEEEecC
Confidence            999999999999998765

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.44  E-value=3e-13  Score=98.39  Aligned_cols=94  Identities=14%  Similarity=0.096  Sum_probs=75.9

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      +..+|.+.. .+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +................|.|.+++.+|+|.|+|
T Consensus         5 ~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   81 (103)
T 3qp3_A            5 LDHAPRITL-RMRSHRVPCGQNTRFILNVQSKPTA-EVKWYHNGVE-LQESSKIHYTNTSGVLTLEILDCHTDDSGTYRA   81 (103)
T ss_dssp             TCEEEEEEE-CCCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEE-CCCCSSEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCCCEEEe-CCcceEEeCCCeEEEEEEEEecCCC-EEEEEECCEE-CCCCCCEEEEECCCEEEEEEcCCCcccCEEEEE
Confidence            445565544 3355678999999999998889999 9999999988 765555444444555689999999999999999


Q ss_pred             EEEeCCCCCcccEEEEE
Q psy3823          88 WARNEQGNQRTPCTFHV  104 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V  104 (365)
                      .|.|..|.....+.|.|
T Consensus        82 ~a~N~~G~~~~~~~l~V   98 (103)
T 3qp3_A           82 VCTNYKGEASDYATLDV   98 (103)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEEEE
Confidence            99999998888888887

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.2e-12  Score=96.56  Aligned_cols=96  Identities=19%  Similarity=0.274  Sum_probs=75.7

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeC-CCEEEEEEcCCCcccCeEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQD-GSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      .+|.+...+.. ..+..|+.+.|.|.+.+.|.+. +.|++++...........+..+ ...+.|.|.+++.+|+|.|+|.
T Consensus         7 ~~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p~-v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm2_A            7 GAPFFEMKLKH-YKIFEGMPVTFTCRVAGNPKPK-IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIM   84 (110)
T ss_dssp             CCCCBSSCCCC-EEEETTCCEEEEEEBCCSSCCE-EEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEE
T ss_pred             CCCEEEecCcC-eEEeCCCeEEEEEEEEecCCCE-EEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEE
Confidence            45666544433 3389999999999999999998 9999998765544444444332 4456799999999999999999


Q ss_pred             EEcCCccceecEEEEEEcC
Q psy3823         301 ARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       301 a~n~~g~~~~~~~l~v~~~  319 (365)
                      |.|..|..+..+.|.|...
T Consensus        85 a~N~~g~~~~~~~l~V~~~  103 (110)
T 2dm2_A           85 AANPQGRISCTGRLMVQAV  103 (110)
T ss_dssp             EECTTCCEEECCCEEEECC
T ss_pred             EEECCCeEEEEEEEEEECC
Confidence            9999999999889988754

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=5.7e-13  Score=99.57  Aligned_cols=94  Identities=11%  Similarity=0.096  Sum_probs=75.0

Q ss_pred             cccCCeEeeC--CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823           8 STDEPVCKQS--QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus         8 ~~~~p~~~~~--~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+|.+...  ....+.+.+|+.+.|.|.+.+.|.+ .+.|++++.. +..... ..........|.|.+++.+|+|.|
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~-l~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y   94 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRP-QVVWTKGGAP-LDTSRV-HVRTSDFDTVFFVRQAARSDSGEY   94 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCC-EEEEEETTEE-CCCSSC-EEEECSSEEEEEESSCCTTTCEEE
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCC-EEEEEECCEE-CCCCcE-EEEECCCeEEEEECCCChhcCEEE
Confidence            4456666422  3466788999999999998899999 9999999988 763322 333444456799999999999999


Q ss_pred             EEEEEeCCCCCcccEEEEE
Q psy3823          86 LCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        86 ~C~a~~~~~~~~~~~~l~V  104 (365)
                      +|.|.|..|.....+.|.|
T Consensus        95 ~C~a~N~~G~~~~~~~l~V  113 (118)
T 2e7c_A           95 ELSVQIENMKDTATIRIRV  113 (118)
T ss_dssp             EEEEECSSCEECCEEEEEE
T ss_pred             EEEEEeCCCeEEEEEEEEE
Confidence            9999999998888899988

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=5.1e-13  Score=96.57  Aligned_cols=82  Identities=12%  Similarity=0.106  Sum_probs=68.0

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .......+.+|+.+.|.|.+  .|.+ .++|+|++.. +..........++....|.|.+++.+|+|.|+|.|.|.  ..
T Consensus        12 ~~~~~~~v~~G~~v~l~C~v--~p~p-~v~W~k~g~~-l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~   85 (100)
T 2yuz_A           12 TPLTDQTVNLGKEICLKCEI--SENI-PGKWTKNGLP-VQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NV   85 (100)
T ss_dssp             BCCCCEEEETTSCCCEEEEC--SSCC-CEEEEETTEE-CCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CC
T ss_pred             ccCCceEEcCCCCEEEEEEe--CCCC-eEEEEECCEE-CCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--Ce
Confidence            34456778999999999999  7888 9999999998 76655555555666778999999999999999999987  44


Q ss_pred             cccEEEEE
Q psy3823          97 RTPCTFHV  104 (365)
Q Consensus        97 ~~~~~l~V  104 (365)
                      ..++.|.|
T Consensus        86 ~~~a~L~V   93 (100)
T 2yuz_A           86 TLPAKVHV   93 (100)
T ss_dssp             CEEEEEEE
T ss_pred             eEEEEEEE
Confidence            57788888

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=4.7e-13  Score=98.67  Aligned_cols=97  Identities=14%  Similarity=0.283  Sum_probs=76.2

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+...+.. ..+..|+.+.|.|.+.+.|.+. +.|++++..................+.|.|.+++.+|+|.|+|.|
T Consensus         8 ~~P~i~~~~~~-~~v~~G~~v~l~C~~~g~p~p~-v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm3_A            8 FRPHFLQAPGD-LTVQEGKLCRMDCKVSGLPTPD-LSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA   85 (110)
T ss_dssp             CCCEEEECCCE-EEEESSSCBCCEEEEECSSCCE-EECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEE
T ss_pred             CCCcEEeCCCc-EEEeCCCEEEEEEEEEEcCCCE-EEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEE
Confidence            56766655444 3488999999999999999998 999998875544333333333444567999999999999999999


Q ss_pred             EcCCccceecEEEEEEcCc
Q psy3823         302 RNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~~~~  320 (365)
                      .|..|..+..+.|.|..++
T Consensus        86 ~n~~g~~~~~~~l~V~~~p  104 (110)
T 2dm3_A           86 TNRAGQNSFSLELVVAAKE  104 (110)
T ss_dssp             ECSSCEEEECCEEEEECCC
T ss_pred             ECCCCEEEEEEEEEEeCCC
Confidence            9999999999999987553

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.43  E-value=4.1e-12  Score=106.56  Aligned_cols=164  Identities=13%  Similarity=0.127  Sum_probs=101.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCC--c--CCC-C--------CCceeEe--cCCeEEEEEEccCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNS--G--TAP-R--------PLTSYSI--QDGSTSVARYTPTSELE   81 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~--~--~l~-~--------~~~~~~~--~~~~~~~l~i~~~~~~d   81 (365)
                      +..+.+.+|++++|.|...+.+  .. .+.|||...  .  .+. .        ..+....  .......|.|.+++.+|
T Consensus         8 p~~v~v~~G~~vtL~C~~s~~~~~~~-~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   86 (229)
T 1hxm_A            8 HQTVPVSIGVPATLRCSMKGEAIGNY-YINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD   86 (229)
T ss_dssp             CSEEEEETTCCEEEEEEECSSCGGGS-EEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             CCEEEEcCCCCEEEEeEecCCccCcc-eEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhH
Confidence            4567789999999999976443  34 899998532  1  010 0        1111111  12345589999999999


Q ss_pred             CeEEEEEEEeCCC------CCc--ccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEec-CCCCe
Q psy3823          82 YGTLLCWARNEQG------NQR--TPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PPYKK  152 (365)
Q Consensus        82 ~G~Y~C~a~~~~~------~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~  152 (365)
                      +|.|.|.+.+...      ...  ....|.|.....   +..+|.+.+..            ..++|.|.+.+. |.+..
T Consensus        87 sg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~---~~~~P~v~~~~------------~~~~L~C~~~g~~P~~i~  151 (229)
T 1hxm_A           87 EGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQ---PHTKPSVFVMK------------NGTNVACLVKEFYPKDIR  151 (229)
T ss_dssp             CEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSC---CCBCCEEEEEE------------ETTEEEEEEESCBSSCCE
T ss_pred             CeEEEEEEecCCCcccccchhhcCccEEEEEeccCC---CCcCCcEEEcC------------CCCeEEEEEEEEeCCCEE
Confidence            9999999987531      111  345777732110   01245544311            124899999975 55546


Q ss_pred             eEEEeCCeEEeeCCCCceEEeeceEEEeeecC-CCCeEEEEEEEcCCC
Q psy3823         153 LIWTHNGITISNNASAGRIITNQTLVLQSVTR-HSGGLYACSAINSQG  199 (365)
Q Consensus       153 i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~  199 (365)
                      +.|+++ ..+...........++++.+..... ++.|.|+|.+.|..+
T Consensus       152 v~W~~~-~~~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~  198 (229)
T 1hxm_A          152 INLVSS-KKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNK  198 (229)
T ss_dssp             EEEECS-SEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETTE
T ss_pred             EEEecC-CEEecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCCC
Confidence            999999 7775432211112245666655444 788999999998764

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.43  E-value=5.9e-13  Score=92.72  Aligned_cols=78  Identities=14%  Similarity=0.118  Sum_probs=64.0

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      ..+.+.+|+.+.|.|.+.+ |.+ .++|+|++.. +...........+...+|.|.+++.+|+|.|+|.|.    .....
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p-~v~W~k~g~~-l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~----n~~~~   76 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGG-PVRWYKDGER-LASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAP----QDSRI   76 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CST-TCEEEETTEE-CCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECT----TTCEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCc-EEEEEECCEE-ccccccEEEeecCCeEEEEecCCCCcccEEEEEEEC----CEEEE
Confidence            4567889999999999854 888 9999999999 776666555556666789999999999999999874    34577


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      +.|+|
T Consensus        77 a~l~V   81 (84)
T 2lu7_A           77 FLVSV   81 (84)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88887

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.43  E-value=6.3e-13  Score=94.76  Aligned_cols=89  Identities=15%  Similarity=0.146  Sum_probs=70.4

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCC--CcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNN--SGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~--~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      +|.+. ..+..+.+.+|+.+.|.|.+.+.|.+ .++|++++  .. +.....  .........|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~~~~~~-~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~   76 (93)
T 1wit_A            2 KPKIL-TASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAA-LAPELL--VDAKSSTTSIFFPSAKRADSGNYKLK   76 (93)
T ss_dssp             CCEEC-CCCCEEEECTTBCCEEEEEEECCSSC-EEEEECSTTTCB-CSTTSE--EEEETTEEEEECTTBCGGGCEEEEEE
T ss_pred             CCeEE-cCCCceEEeCCCEEEEEEEEEEcCCC-EEEEEECCCCcc-cCCcEE--EEecCCEEEEEECCCChhcCEEEEEE
Confidence            35553 23457779999999999998899999 99999999  66 654432  22223446899999999999999999


Q ss_pred             EEeCCCCCcccEEEEE
Q psy3823          89 ARNEQGNQRTPCTFHV  104 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V  104 (365)
                      |.|..|.....+.|.|
T Consensus        77 a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           77 VKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEcCCCeEEEEEEEEE
Confidence            9999998777777776

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.43  E-value=1.5e-12  Score=93.87  Aligned_cols=93  Identities=14%  Similarity=0.215  Sum_probs=73.4

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +|.+...+... .+..|+.+.|.|.+.+.|.+. +.|++++.... ...+..+..++..+.|.|.+++.+|+|.|+|.|.
T Consensus         6 ~P~i~~~~~~~-~v~~G~~~~l~C~~~g~p~p~-v~W~~~g~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   82 (99)
T 3puc_A            6 KPVIVTGLQDT-TVSSDSVAKFAVKATGEPRPT-AIWTKDGKAIT-QGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK   82 (99)
T ss_dssp             EEEEEECCCCE-EEESSSCEEEEEEEEEESCCE-EEEEETTEECC-SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCccE-EEeCCCcEEEEEEEEecCCCE-EEEEECCEECc-CCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEE
Confidence            44444443333 388999999999999999998 99999886443 2344555556666789999999999999999999


Q ss_pred             cCCccceecEEEEEEc
Q psy3823         303 NEQGSQRTPCTFHVVK  318 (365)
Q Consensus       303 n~~g~~~~~~~l~v~~  318 (365)
                      |..|..+..+.|.|..
T Consensus        83 n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           83 NSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCcEeEEEEEEEEe
Confidence            9999998888888763

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.2e-12  Score=94.58  Aligned_cols=92  Identities=20%  Similarity=0.338  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+|.+...+    ....+.+|+.+.|.|.+.|.|.+. +.|++++..+...........+++|.|.+++..|+|.|+|.
T Consensus         6 ~~~P~i~~~p----~~~~v~~G~~~~l~C~~~g~p~p~-v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (100)
T 2edj_A            6 SGPPIILQGP----ANQTLAVDGTALLKCKATGDPLPV-ISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCV   80 (100)
T ss_dssp             CSSCEEEECC----CCEEEESSSEEEECCEEECSSCCE-EEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEE
T ss_pred             CCCCEEEeCc----CCEEEcCCCcEEEEEEEEEcCCCE-EEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEE
Confidence            3466665544    335688999999999999998887 99999999887444333444567899999999999999999


Q ss_pred             EEcCCCCCCcccEEEEEe
Q psy3823         194 AINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       194 ~~~~~~~~~s~~~~l~v~  211 (365)
                      +.|..|... ..+.|.|.
T Consensus        81 a~n~~g~~~-~~~~l~V~   97 (100)
T 2edj_A           81 ATSSSGETS-WSAVLDVT   97 (100)
T ss_dssp             EECSSCCCB-CCEEEEEE
T ss_pred             EEcCCCCEE-EEEEEEEe
Confidence            999998765 67888887

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.8e-12  Score=96.84  Aligned_cols=86  Identities=13%  Similarity=0.109  Sum_probs=71.3

Q ss_pred             ceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         232 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       232 ~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                      ....+..|+.+.|.|.+.|.|.|. +.|+++|....  .....+......+.|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus        32 ~~~~v~~G~~~~l~C~~~g~P~p~-i~W~k~g~~l~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~  108 (118)
T 2e7c_A           32 QTYIRKVGEQLNLVVPFQGKPRPQ-VVWTKGGAPLD--TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTAT  108 (118)
T ss_dssp             SCEEEESSSCEEEEEEEEEESCCE-EEEEETTEECC--CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCE
T ss_pred             CCEEEECCCEEEEEEEEccCCCCE-EEEEECCEECC--CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEE
Confidence            334588999999999999999998 99999987543  233444455666789999999999999999999999999999


Q ss_pred             EEEEEEcCc
Q psy3823         312 CTFHVVKAG  320 (365)
Q Consensus       312 ~~l~v~~~~  320 (365)
                      +.|.|..++
T Consensus       109 ~~l~V~~~P  117 (118)
T 2e7c_A          109 IRIRVVEKA  117 (118)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999887653

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=97.07  Aligned_cols=97  Identities=19%  Similarity=0.190  Sum_probs=75.7

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCC-CEEEEEEcCCCcccCeEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDG-STSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      .+|.+...+... .+..|+.+.|.|.+.+.|.+. +.|++++........+..+..++ ..+.|.|.+++.+|+|.|+|.
T Consensus        14 ~~p~f~~~p~~~-~v~~G~~v~L~C~~~g~p~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (116)
T 2kkq_A           14 RAPMFIYKPQSK-KVLEGDSVKLECQISAIPPPK-LFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS   91 (116)
T ss_dssp             BCCCBSSCCCCE-EEETTEEEEEEEEBCCBSCCE-EEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCCeEEeCCCcE-EEeCCCcEEEEEEEeccCCCE-EEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEE
Confidence            455565544443 389999999999999999997 99999987554433444443333 355799999999999999999


Q ss_pred             EEcCCccceecEEEEEEcCc
Q psy3823         301 ARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       301 a~n~~g~~~~~~~l~v~~~~  320 (365)
                      |.|..|..+..+.|.|..++
T Consensus        92 a~N~~G~~~~~~~l~V~~~p  111 (116)
T 2kkq_A           92 AVNEAGVTTCNTRLDVTARP  111 (116)
T ss_dssp             EEETTEEEEEEEEEEEECCS
T ss_pred             EEcCCCeEEEEEEEEEeCCC
Confidence            99999999999999887654

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.41  E-value=1.9e-12  Score=115.47  Aligned_cols=179  Identities=13%  Similarity=0.125  Sum_probs=107.9

Q ss_pred             CceEEEEecCCcEEEEEEeCCCC-------------CcceEEEEeCCCc----CC--CCC--------C-c-eeEe----
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANP-------------QAQYFTWAFNNSG----TA--PRP--------L-T-SYSI----   64 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p-------------~~~~v~W~~~~~~----~l--~~~--------~-~-~~~~----   64 (365)
                      ++..+.+.+|++++|.|.....|             ....+.||+....    .+  ..+        . . ....    
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            44567789999999999843222             1237999874210    00  000        0 0 1110    


Q ss_pred             -----cCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCC-cE
Q psy3823          65 -----QDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGV-DI  138 (365)
Q Consensus        65 -----~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~-~v  138 (365)
                           .......|.|.+++.+|.|.|.|.+.+..+.....+.|.|         ..+|.+.+.+...   ..+..|+ .+
T Consensus       244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V---------~~pP~V~v~p~~~---~~~~~G~~~v  311 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAV---------YKPPKVSLMPATL---ARAAPGEAPP  311 (401)
T ss_dssp             CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEE---------EBCCEEEEESSSC---CCCCTTCCCC
T ss_pred             cccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEee---------ccCCeEeeccCcc---eeecCCCccE
Confidence                 1123468999999999999999999987766667788888         5688877764321   1135676 89


Q ss_pred             EEEEEEEecCCC--CeeEEE-eCC---eEEeeCC----------CCceEEeeceEEEeeecC-CCCeEEEEEEEcCCCCC
Q psy3823         139 YFDCHIQANPPY--KKLIWT-HNG---ITISNNA----------SAGRIITNQTLVLQSVTR-HSGGLYACSAINSQGEG  201 (365)
Q Consensus       139 ~l~C~~~~~p~~--~~i~W~-~~~---~~l~~~~----------~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~  201 (365)
                      +|.|.+.+..+.  ..+.|. +|+   ..+....          ..+.......|.+..... ++.+.|+|.+.|..-..
T Consensus       312 tL~C~a~GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~  391 (401)
T 3f8u_B          312 ELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPA  391 (401)
T ss_dssp             CEEEEEEEEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCT
T ss_pred             EEEEEecCCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCC
Confidence            999999985433  459995 765   2221110          011111123455554432 34569999999987544


Q ss_pred             CcccEEE
Q psy3823         202 GSTPFDL  208 (365)
Q Consensus       202 ~s~~~~l  208 (365)
                      .++...+
T Consensus       392 g~rs~sV  398 (401)
T 3f8u_B          392 SGRSAEV  398 (401)
T ss_dssp             TCEEEEE
T ss_pred             CcceEEE
Confidence            3333333

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.41  E-value=4e-13  Score=98.34  Aligned_cols=86  Identities=16%  Similarity=0.230  Sum_probs=71.9

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      ..+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +................|.|.+++.+|+|.|+|.|.|..|..
T Consensus        19 ~~p~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~g~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   96 (106)
T 1nct_A           19 TKPRSMTVYEGESARFSCDTDGEPVP-TVTWLRKGQV-LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   96 (106)
T ss_dssp             ECCCCEEESSSSCEECCEEEECSSCC-BCCBCSSSSC-CTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBC
T ss_pred             ECCCCEEEeCCCcEEEEEEEEEcCCC-EEEEEECCEE-CCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeE
Confidence            34556778999999999998889999 9999999988 765554444444455689999999999999999999999998


Q ss_pred             cccEEEEE
Q psy3823          97 RTPCTFHV  104 (365)
Q Consensus        97 ~~~~~l~V  104 (365)
                      ...+.|.|
T Consensus        97 ~~~~~l~V  104 (106)
T 1nct_A           97 EAEFTLTI  104 (106)
T ss_dssp             CEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888887

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.41  E-value=1.4e-12  Score=93.67  Aligned_cols=86  Identities=15%  Similarity=0.194  Sum_probs=70.8

Q ss_pred             CCceEEEEecCCcEEEEEEeCCC-CCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ..+....+.+|+.+.|.|.+.+. |.+ .+.|++++.. +................|.|.+++.+|.|.|+|.|.|..|.
T Consensus         6 ~~~~~~~v~~G~~v~l~C~~~g~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (97)
T 2bk8_A            6 GQIMHAVGEEGGHVKYVCKIENYDQST-QVTWYFGVRQ-LENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE   83 (97)
T ss_dssp             CCCCCEEECTTCCEEEEEEEESCCTTC-EEEEEETTEE-CCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             ccCcCEEEcCCCcEEEEEEEeccCCCC-EEEEEECCEE-CcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence            44566788999999999998786 888 9999999988 66554443333444568999999999999999999999998


Q ss_pred             CcccEEEEE
Q psy3823          96 QRTPCTFHV  104 (365)
Q Consensus        96 ~~~~~~l~V  104 (365)
                      ....+.|.|
T Consensus        84 ~~~~~~l~V   92 (97)
T 2bk8_A           84 DSSYAELFV   92 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EeEEEEEEE
Confidence            888888887

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.41  E-value=7.3e-13  Score=97.24  Aligned_cols=94  Identities=18%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+....... .+..|+.+.|.|.+.+.|.+. +.|++++...... ........  ...|.|.+++.+|+|.|+|.|
T Consensus         9 ~~P~~~~~~~~~-~v~~G~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~-~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a   83 (108)
T 3kvq_A            9 VAPTITGNLENQ-TTSIGESIEVSCTASGNPPPQ-IMWFKDNETLVED-SGIVLKDG--NRNLTIRRVRKEDEGLYTCQA   83 (108)
T ss_dssp             --CCCBSCCCCE-EEETTCCEEEECBCC----CC-EEEEESSSBCCCB-TTEEEETT--TTEEEECSCCGGGCEEEEEEE
T ss_pred             CCCceecCCCCe-EEeCCCeEEEEEECcCcCCCe-EEEEECCeEcccC-CCeEEeCC--CcEEEEeecCcccCEEEEEEE
Confidence            677776555443 388999999999999999998 9999988754322 22222222  245999999999999999999


Q ss_pred             EcCCccceecEEEEEEcCc
Q psy3823         302 RNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~~~~  320 (365)
                      .|..|.....+.|.|..++
T Consensus        84 ~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           84 CSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             C----CEEEEEEEEEEC--
T ss_pred             EeCCCceEEEEEEEEeCCC
Confidence            9999999999999887653

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.40  E-value=8.5e-13  Score=95.41  Aligned_cols=92  Identities=13%  Similarity=0.168  Sum_probs=72.0

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      ++|.+.. .+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +...... ..........|.|.+++.+|+|.|+|.
T Consensus         4 ~~P~~~~-~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~g~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   80 (100)
T 2kdg_A            4 GPPRFIQ-VPENMSIDEGRFCRMDFKVSGLPAP-DVSWYLNGRT-VQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACV   80 (100)
T ss_dssp             EEEECCC-CCCCEEEETTCCEEEEEECEEESCC-EEEEEETTEE-ECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEe-CCCCEEecCCCEEEEEEEEEeeCCC-EEEEEECCEE-CcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEE
Confidence            3444432 3456778999999999998789999 9999999987 6554332 222334446899999999999999999


Q ss_pred             EEeCCCCCcccEEEEE
Q psy3823          89 ARNEQGNQRTPCTFHV  104 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V  104 (365)
                      |.|..|.....+.|.|
T Consensus        81 a~n~~g~~~~~~~l~V   96 (100)
T 2kdg_A           81 AKNRAGEATFTVQLDV   96 (100)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEcCCCeEEEEEEEEE
Confidence            9999998888888888

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.40  E-value=2.7e-12  Score=107.62  Aligned_cols=171  Identities=13%  Similarity=0.160  Sum_probs=99.8

Q ss_pred             cceecCCcEEEEEEEEecC-CCCeeEEEeC--Ce---EEe-e-C----------CCCceEEe------eceEEEeeecCC
Q psy3823         130 SVLNEGVDIYFDCHIQANP-PYKKLIWTHN--GI---TIS-N-N----------ASAGRIIT------NQTLVLQSVTRH  185 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p-~~~~i~W~~~--~~---~l~-~-~----------~~~~~~~~------~~~l~i~~~~~~  185 (365)
                      ..+.+|++|+|.|.+.+.. ....+.|++.  +.   .+. . .          ...+....      +.+|.|.+++..
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (226)
T 3mlr_H           10 EVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQAS   89 (226)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGG
T ss_pred             EEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcc
Confidence            3578999999999997532 2233999972  21   110 0 0          00122211      235999999999


Q ss_pred             CCeEEEEEEEcCCC--------CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC-Cce
Q psy3823         186 SGGLYACSAINSQG--------EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ-AQY  256 (365)
Q Consensus       186 d~G~Y~C~~~~~~~--------~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~  256 (365)
                      |+|.|.|.+.+..+        ........|.|..      ....+|.+....... .+..|+.+.|.|.+.+.++ +..
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~------~~~~~P~i~~~~~~~-~~~~g~~~~l~C~~~~~~p~~~~  162 (226)
T 3mlr_H           90 DTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSS------GTTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVT  162 (226)
T ss_dssp             GCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECC------CCCBCCEEEEEEEEE-CSTTSSEEEEEEEEEEEBSSCCE
T ss_pred             cCEEEEEeEccCCCcccccchhhhhCCccEEeecc------CCCCCCcEEEecCcc-cccCCCCEEEEEEEEEEECCCeE
Confidence            99999999976421        0111233566641      001344443222111 1457899999999988543 335


Q ss_pred             eEEEeCCCCCCCCCCc--eeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823         257 FTWAFNNSDTAPRPLT--SYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRT  310 (365)
Q Consensus       257 ~~W~~~~~~~~~~~~~--~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~  310 (365)
                      +.|  ++.........  .....++.   .+.|.|.+...+| |.|+|.|.|..+....
T Consensus       163 v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~  218 (226)
T 3mlr_H          163 VSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  218 (226)
T ss_dssp             EEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEE
T ss_pred             EEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCe
Confidence            899  44332221111  11122332   3468899888888 9999999998776543

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.40  E-value=9.7e-13  Score=94.90  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc-eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT-SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      +....+.+|+.++|.|.+.+.|.+ .+.|++++.. +..... .....++...+|.|.+++.+|+|.|+|.|.|..|...
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~   89 (99)
T 1u2h_A           12 LMDQSVREGQDVIMSIRVQGEPKP-VVSWLRNRQP-VRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQ   89 (99)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEE-CCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCceEecCCCEEEEEEEEEEcCCC-EEEEEECCEE-CCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCcee
Confidence            445578999999999998889999 9999999988 654433 2333455556899999999999999999999998887


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      ..+.|.|
T Consensus        90 ~~~~l~V   96 (99)
T 1u2h_A           90 CEARLEV   96 (99)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7788877

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.40  E-value=1.4e-12  Score=92.28  Aligned_cols=79  Identities=18%  Similarity=0.235  Sum_probs=61.9

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      ...+.+.+|+.+.|.|.+.+ |.+ .++|+|||.. +..........++...+|.|.+++.+|+|.|+|.|.|    ...
T Consensus        13 ~~~v~~~~g~~v~l~C~v~~-p~~-~v~W~k~g~~-i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~   85 (91)
T 2lvc_A           13 HVFVHAITSECVMLACEVDR-EDA-PVRWYKDGQE-VEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD----ECA   85 (91)
T ss_dssp             CEEEECCTTCCEEEEEECSC-TTS-CCEEEETTSC-CCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS----CEE
T ss_pred             CeEEEEECCCcEEEEEEECC-CCc-EEEEEECCEE-eeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc----eEE
Confidence            34566779999999999854 888 8999999998 7766655555566667899999999999999999854    345


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      ++.|+|
T Consensus        86 ~~~ltV   91 (91)
T 2lvc_A           86 YFTVTI   91 (91)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            555543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.40  E-value=1.2e-12  Score=95.87  Aligned_cols=93  Identities=14%  Similarity=0.177  Sum_probs=74.0

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      ..|.+...+... .+..|+.+.|.|.+.|.|.|. +.|+++|.... ...............|.|.+++.+|+|.|+|.|
T Consensus        13 ~~~~i~~~p~~~-~v~~G~~v~L~C~~~g~p~p~-v~W~k~g~~l~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   89 (106)
T 1nct_A           13 LAARILTKPRSM-TVYEGESARFSCDTDGEPVPT-VTWLRKGQVLS-TSARHQVTTTKYKSTFEISSVQASDEGNYSVVV   89 (106)
T ss_dssp             CCCEEEECCCCE-EESSSSCEECCEEEECSSCCB-CCBCSSSSCCT-TCSSEEEEECSSEEEEEECCCCSSCCSEEEECC
T ss_pred             CCCEEEECCCCE-EEeCCCcEEEEEEEEEcCCCE-EEEEECCEECC-CCCCEEEEECCCEEEEEECcCCchhCEEEEEEE
Confidence            456665544443 388999999999999999998 99999886443 334444444555678999999999999999999


Q ss_pred             EcCCccceecEEEEEE
Q psy3823         302 RNEQGSQRTPCTFHVV  317 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~  317 (365)
                      .|..|..+.++.|.|.
T Consensus        90 ~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           90 ENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             BCSSCBCCEEEEEEEC
T ss_pred             EeCCCeEEEEEEEEEE
Confidence            9999999888888774

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.39  E-value=3.3e-12  Score=109.19  Aligned_cols=177  Identities=13%  Similarity=0.200  Sum_probs=102.2

Q ss_pred             cceecCCcEEEEEEEEecC-CCCeeEEEeC--Ce---EEe-e-----------CCCCceEEe------eceEEEeeecCC
Q psy3823         130 SVLNEGVDIYFDCHIQANP-PYKKLIWTHN--GI---TIS-N-----------NASAGRIIT------NQTLVLQSVTRH  185 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p-~~~~i~W~~~--~~---~l~-~-----------~~~~~~~~~------~~~l~i~~~~~~  185 (365)
                      ..+.+|++|+|.|...+.+ ....+.|++.  +.   .+. .           ....+....      +.+|.|.+++.+
T Consensus        33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  112 (256)
T 3sob_H           33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAE  112 (256)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcc
Confidence            3578999999999997532 2234999972  21   110 0           001122221      224999999999


Q ss_pred             CCeEEEEEEEcCCC----------CCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCC
Q psy3823         186 SGGLYACSAINSQG----------EGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQA  254 (365)
Q Consensus       186 d~G~Y~C~~~~~~~----------~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~  254 (365)
                      |+|.|.|.+.+..+          ........|.|..      ....+|.+....... .+..|+.++|.|.+.+. |.+
T Consensus       113 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~------~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~~~~p~~  185 (256)
T 3sob_H          113 DTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSS------ASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEP  185 (256)
T ss_dssp             GCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECS------SCCBCCEEEEECCC------TTEEEEEEEEEEEBSSC
T ss_pred             cCEEEEEEEecCCCccccccccceeEECCCEEEEEec------CCCCCCEEEEECCCc-ccccCCcEEEEEEEEEEECCC
Confidence            99999999987531          0112334566641      011334443211111 15689999999999884 433


Q ss_pred             ceeEEEeCCCCCCCCCCc--eeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEEEEE
Q psy3823         255 QYFTWAFNNSDTAPRPLT--SYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFHV  316 (365)
Q Consensus       255 ~~~~W~~~~~~~~~~~~~--~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v  316 (365)
                      ..+.|  ++.........  .....++.   .+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus       186 ~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          186 VTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             CEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             eEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence            35899  44433211111  11122332   3468899988889 9999999998877655555443

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.39  E-value=2.9e-12  Score=105.84  Aligned_cols=161  Identities=12%  Similarity=0.138  Sum_probs=94.3

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCC--e---EEeeC-----CCCceEEe-------eceEEEeeecCCCCeEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNG--I---TISNN-----ASAGRIIT-------NQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~--~---~l~~~-----~~~~~~~~-------~~~l~i~~~~~~d~G~Y~C  192 (365)
                      ..+.+|++++|.|.+.+.. + .+.|++..  .   .+...     ...+....       ..+|.|.+++..|+|.|.|
T Consensus        11 v~v~~G~~v~L~C~~~~~~-~-~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   88 (207)
T 1ypz_E           11 LSLHEGTDSALRCNFTTTM-R-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFC   88 (207)
T ss_dssp             EEEETTCCEEEEEEESSCC-S-EEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEE
T ss_pred             EEEccCCcEEEEEEEeCCC-e-EEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEE
Confidence            3678999999999998643 3 49999832  1   11100     01112211       2479999999999999999


Q ss_pred             EEEcCCCC----------CCcccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCC--CceeEEE
Q psy3823         193 SAINSQGE----------GGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQ--AQYFTWA  260 (365)
Q Consensus       193 ~~~~~~~~----------~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~~W~  260 (365)
                      .+.+..+.          .......|.|.          ..+.... .+... +..+ .+.|.|.+.+.++  +. +.|+
T Consensus        89 ~~~~~~~~~p~~~~~~~~~~~~~t~L~V~----------~~~~~~~-~P~v~-~~~~-~~~l~C~~~g~~P~~~~-v~W~  154 (207)
T 1ypz_E           89 AADTWHISEGYELGTDKLVFGQGTQVTVE----------PKSQPPA-KPSVF-IMKN-GTNVACLVKDFYPKEVT-ISLR  154 (207)
T ss_dssp             EEECBCCCTTCCCCCCCCEECCCEEEEEE----------CCCCCCC-CCEEE-EEEE-TTEEEEEEEEESSSCCE-EEEE
T ss_pred             EEecCCcccccccccceeeecCccEEEEc----------cCCCCCC-CCeEE-EeCC-CCeEEEEEeeEeCCCeE-EEEe
Confidence            99986421          11234567776          2211111 11111 2222 3799999988644  45 9999


Q ss_pred             eCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce
Q psy3823         261 FNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR  309 (365)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~  309 (365)
                      ++ ..............++.....  .....+|.|.|+|.|.|..+..+
T Consensus       155 ~~-~~l~~~~~~~~~~~~g~y~~~--~~~~~~~~~~ytC~v~~~~~~~~  200 (207)
T 1ypz_E          155 SS-KKIVEFDPAIVISPSGKYSAV--KLGQYGDSNSVTCSVQHNSETVH  200 (207)
T ss_dssp             CS-SEEEECCCEEEECTTSSEEEE--ECEEESSTTTCEEEEEETTEEEE
T ss_pred             cC-CcccCCccceEEcCCCcEEEE--EeecccCCCcEEEEEEECCccEe
Confidence            98 532211111122334543322  22333678999999999887654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.38  E-value=1.3e-12  Score=94.30  Aligned_cols=91  Identities=12%  Similarity=0.093  Sum_probs=71.8

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeE-ecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      +|.+.. .+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +........ ........|.|.+++.+|+|.|+|.|
T Consensus         5 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (99)
T 1g1c_A            5 APKIFE-RIQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVK-IERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA   81 (99)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEE-CCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCceEe-cCcceEEcCCCcEEEEEEEEEeCCC-EEEEEECCEE-CCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEE
Confidence            344433 3445678999999999998889999 9999999988 665444322 22344568999999999999999999


Q ss_pred             EeCCCCCcccEEEEE
Q psy3823          90 RNEQGNQRTPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V  104 (365)
                      .|..|.....+.|.|
T Consensus        82 ~N~~g~~~~~~~l~V   96 (99)
T 1g1c_A           82 INIAGETSSHAFLLV   96 (99)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCcEEEEEEEEE
Confidence            999988888888887

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.2e-12  Score=97.71  Aligned_cols=88  Identities=15%  Similarity=0.217  Sum_probs=70.0

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCC-CCceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPR-PLTSYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      +|.+ ...+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +.. ........++   .|.|.+++.+|+|.|+|.|
T Consensus         8 pP~i-~~~p~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~g~~-~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a   81 (118)
T 2eo9_A            8 PPVI-RQGPVNQTVAVDGTFVLSCVATGSPVP-TILWRKDGVL-VSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIA   81 (118)
T ss_dssp             SCCC-SBCCCCEEEETTCEEEEECBCCCSSCC-EEEEEESSSB-CCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEE
T ss_pred             CCEE-EcCCCCEEEcCCCeEEEEEEEEecCCC-EEEEEECCEE-CcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEE
Confidence            3443 334556778999999999998899999 9999999988 653 2333333444   7999999999999999999


Q ss_pred             EeCCCCCcccEEEEE
Q psy3823          90 RNEQGNQRTPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V  104 (365)
                      .|..|.....+.|.|
T Consensus        82 ~n~~g~~~~~~~l~V   96 (118)
T 2eo9_A           82 STPSGEATWSAYIEV   96 (118)
T ss_dssp             ECSSCEEEEECCEEE
T ss_pred             EcCCCcEEEEEEEEE
Confidence            999998777777888

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.38  E-value=1.6e-12  Score=93.67  Aligned_cols=84  Identities=11%  Similarity=0.171  Sum_probs=69.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      +....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +..........+.....|.|.+++.+|+|.|+|.|.|..|....
T Consensus        13 ~~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~g~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~   90 (99)
T 3puc_A           13 LQDTTVSSDSVAKFAVKATGEPRP-TAIWTKDGKA-ITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS   90 (99)
T ss_dssp             CCCEEEESSSCEEEEEEEEEESCC-EEEEEETTEE-CCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CccEEEeCCCcEEEEEEEEecCCC-EEEEEECCEE-CcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeE
Confidence            445678999999999998888999 9999999988 66555444444455568999999999999999999999888777


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      .+.|.|
T Consensus        91 ~~~l~V   96 (99)
T 3puc_A           91 SCKLTI   96 (99)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777777

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2.1e-12  Score=93.14  Aligned_cols=89  Identities=17%  Similarity=0.293  Sum_probs=68.9

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+...+... .+..|+.+.|.|.+.+.|.|. +.|++++.......  .  ........|.|.+++.+|+|.|+|.|
T Consensus        10 ~~P~~~~~~~~~-~v~~G~~v~l~C~~~g~p~p~-v~W~~~g~~~~~~~--~--~~~~~~~~L~i~~v~~~D~G~Y~C~a   83 (99)
T 2yr3_A           10 VAPSFSSVLKDC-AVIEGQDFVLQCSVRGTPVPR-ITWLLNGQPIQYAR--S--TCEAGVAELHIQDALPEDHGTYTCLA   83 (99)
T ss_dssp             EEEEEEECCCCE-EECTTCCEEEECEEEEESCCC-CEEEESSSBCSSCC--C--EEETTEEEEEECSCCTTCCBCEEEEE
T ss_pred             cCCceeecCCCC-EEeCCCeEEEEEEEeeeCCCe-EEEEECCEECcccc--e--EeeCCeEEEEECCCChhhCEEEEEEE
Confidence            455555444333 388999999999999999998 99999887543221  1  12234567999999999999999999


Q ss_pred             EcCCccceecEEEEE
Q psy3823         302 RNEQGSQRTPCTFHV  316 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v  316 (365)
                      .|..|..+..+.|.|
T Consensus        84 ~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           84 ENALGQVSCSAWVTV   98 (99)
T ss_dssp             ECSSCEEEEECCEEE
T ss_pred             EECCCeEEEEEEEEE
Confidence            999999888877776

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=3.6e-12  Score=92.10  Aligned_cols=91  Identities=10%  Similarity=0.088  Sum_probs=70.7

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +|.+...... ..+..|+.+.|.|.+  .|.+. +.|+++|.... ...+..+..++..+.|.|.++..+|+|.|+|.|.
T Consensus         7 p~~~~~~~~~-~~v~~G~~v~l~C~v--~p~p~-v~W~k~g~~l~-~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (100)
T 2yuz_A            7 GLKILTPLTD-QTVNLGKEICLKCEI--SENIP-GKWTKNGLPVQ-ESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPD   81 (100)
T ss_dssp             CCCCSBCCCC-EEEETTSCCCEEEEC--SSCCC-EEEEETTEECC-CCSSEEEEECSSEEEEEESSCCGGGCSEEEEEES
T ss_pred             CCEEeccCCc-eEEcCCCCEEEEEEe--CCCCe-EEEEECCEECC-CCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEc
Confidence            4455444433 338999999999999  78888 99999987543 3445566667777889999999999999999999


Q ss_pred             cCCccceecEEEEEEcCc
Q psy3823         303 NEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       303 n~~g~~~~~~~l~v~~~~  320 (365)
                      |.  ..+.++.|.|..++
T Consensus        82 N~--~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           82 AY--NVTLPAKVHVISGP   97 (100)
T ss_dssp             SS--CCCEEEEEEEECCS
T ss_pred             CC--CeeEEEEEEEeCCC
Confidence            98  55667788887654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.37  E-value=7.7e-12  Score=89.78  Aligned_cols=83  Identities=16%  Similarity=0.234  Sum_probs=67.8

Q ss_pred             eeecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         235 GALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      .+..|+.+.|.|.+.+. |.+. +.|++++.... ......+...+..+.|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus        12 ~v~~G~~v~l~C~~~g~~p~~~-v~W~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   89 (97)
T 2bk8_A           12 VGEEGGHVKYVCKIENYDQSTQ-VTWYFGVRQLE-NSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAE   89 (97)
T ss_dssp             EECTTCCEEEEEEEESCCTTCE-EEEEETTEECC-SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEcCCCcEEEEEEEeccCCCCE-EEEEECCEECc-CCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEE
Confidence            38899999999999997 8887 99999886433 233444444555678999999999999999999999999988888


Q ss_pred             EEEEcC
Q psy3823         314 FHVVKA  319 (365)
Q Consensus       314 l~v~~~  319 (365)
                      |.|...
T Consensus        90 l~V~~~   95 (97)
T 2bk8_A           90 LFVKGV   95 (97)
T ss_dssp             EEETTT
T ss_pred             EEEEec
Confidence            887643

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.37  E-value=1.8e-12  Score=95.04  Aligned_cols=96  Identities=17%  Similarity=0.162  Sum_probs=63.5

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      |.+.+..+|.+.. .+....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +............  ..|.|.+++.+|+|
T Consensus         3 ~~v~~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~~~~~~-~~~~~~~~~~~~~--~~L~i~~v~~~D~G   77 (108)
T 3kvq_A            3 LTVLERVAPTITG-NLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNET-LVEDSGIVLKDGN--RNLTIRRVRKEDEG   77 (108)
T ss_dssp             --------CCCBS-CCCCEEEETTCCEEEECBCC----C-CEEEEESSSB-CCCBTTEEEETTT--TEEEECSCCGGGCE
T ss_pred             eeECccCCCceec-CCCCeEEeCCCeEEEEEECcCcCCC-eEEEEECCeE-cccCCCeEEeCCC--cEEEEeecCcccCE
Confidence            3455666776644 3455678999999999998889999 9999999988 6554443332222  27999999999999


Q ss_pred             EEEEEEEeCCCCCcccEEEEE
Q psy3823          84 TLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      .|+|.|.|..|.....+.|.|
T Consensus        78 ~Y~C~a~n~~g~~~~~~~l~V   98 (108)
T 3kvq_A           78 LYTCQACSVLGCAKVEAFFII   98 (108)
T ss_dssp             EEEEEEC----CEEEEEEEEE
T ss_pred             EEEEEEEeCCCceEEEEEEEE
Confidence            999999999998888888888

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.36  E-value=2.4e-12  Score=101.00  Aligned_cols=96  Identities=11%  Similarity=0.180  Sum_probs=74.0

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEe-eCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      .+|.+...... ..+..|+.+.|.|.+.+.|.+. +.|++++..... .....+. .......|.|.+++.+|+|.|+|.
T Consensus        40 ~~P~~~~~~~~-~~v~~G~~v~L~C~~~g~P~p~-v~W~k~g~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  116 (154)
T 1fhg_A           40 VKPYFTKTILD-MEVVEGSAARFDCKVEGYPDPE-VMWFKDDNPVKE-SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK  116 (154)
T ss_dssp             EEEEEEECCCC-EEEETTSCEEEEEEEEEESCCE-EEEEETTEECCC-SSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEccCCc-EEEeCCCeEEEEEEEEEecCCE-EEEEECCEECCC-CCcEEEEECCCCeEEEEECCCChhcCEEEEEE
Confidence            45555554444 3489999999999999999998 999999874432 2333332 223456799999999999999999


Q ss_pred             EEcCCccceecEEEEEEcCc
Q psy3823         301 ARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       301 a~n~~g~~~~~~~l~v~~~~  320 (365)
                      |.|..|.....+.|.|...+
T Consensus       117 a~N~~G~~~~~~~l~V~~~p  136 (154)
T 1fhg_A          117 AVNSLGEATCTAELLVETMG  136 (154)
T ss_dssp             EEETTEEEEEEEEEEEECC-
T ss_pred             EEECCCeEEEEEEEEEeCcC
Confidence            99999999998999887654

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.36  E-value=3.2e-12  Score=95.13  Aligned_cols=86  Identities=16%  Similarity=0.154  Sum_probs=69.5

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCC-CCceeEe-cCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPR-PLTSYSI-QDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~-~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ..+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +.. ....... ......+|.|.+++.+|+|.|+|.|.|..|
T Consensus        20 ~~p~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   97 (116)
T 2kkq_A           20 YKPQSKKVLEGDSVKLECQISAIPPP-KLFWKRNNEM-VQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAG   97 (116)
T ss_dssp             SCCCCEEEETTEEEEEEEEBCCBSCC-EEEEEETTEE-CCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTE
T ss_pred             eCCCcEEEeCCCcEEEEEEEeccCCC-EEEEEECCEE-CcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence            34556788999999999998899999 9999999987 653 2232222 223445899999999999999999999999


Q ss_pred             CCcccEEEEE
Q psy3823          95 NQRTPCTFHV  104 (365)
Q Consensus        95 ~~~~~~~l~V  104 (365)
                      .....+.|.|
T Consensus        98 ~~~~~~~l~V  107 (116)
T 2kkq_A           98 VTTCNTRLDV  107 (116)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEEEE
Confidence            8888888888

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=3.2e-12  Score=95.44  Aligned_cols=94  Identities=16%  Similarity=0.262  Sum_probs=74.0

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+...+.. ..+..|+.+.|.|.+.|.|.+. +.|+++|..............++   .|.|.+++.+|+|.|+|.|
T Consensus         7 ~pP~i~~~p~~-~~v~~G~~v~l~C~~~g~p~p~-i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a   81 (118)
T 2eo9_A            7 GPPVIRQGPVN-QTVAVDGTFVLSCVATGSPVPT-ILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIA   81 (118)
T ss_dssp             CSCCCSBCCCC-EEEETTCEEEEECBCCCSSCCE-EEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEE
T ss_pred             CCCEEEcCCCC-EEEcCCCeEEEEEEEEecCCCE-EEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEE
Confidence            45666544434 3388999999999999999998 99999987654434444444444   5999999999999999999


Q ss_pred             EcCCccceecEEEEEEcCc
Q psy3823         302 RNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~~~~  320 (365)
                      .|..|.....+.|.|...+
T Consensus        82 ~n~~g~~~~~~~l~V~~~~  100 (118)
T 2eo9_A           82 STPSGEATWSAYIEVQEFG  100 (118)
T ss_dssp             ECSSCEEEEECCEEEECCS
T ss_pred             EcCCCcEEEEEEEEEEeCC
Confidence            9999999888888887554

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.36  E-value=6.2e-12  Score=90.88  Aligned_cols=88  Identities=10%  Similarity=0.124  Sum_probs=69.0

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      .+|.+.......+.+.+|+.+.|.|.+. .|.+ .+.|++++.. +..........++....|.|.+++.+|+|.|+|.|
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~-~v~W~k~g~~-i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKL-EVKWYKNGQE-IRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTS-CEEEEESSCB-CCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCc-eEEEEECCEE-CCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE
Confidence            3566655444446788999999999987 6888 9999999988 76555544445556668999999999999999998


Q ss_pred             EeCCCCCcccEEEEE
Q psy3823          90 RNEQGNQRTPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V  104 (365)
                          +.....+.|.|
T Consensus        83 ----g~~~~~~~l~V   93 (100)
T 2yuv_A           83 ----GDEKCSTELFV   93 (100)
T ss_dssp             ----TTEEEEEEEEE
T ss_pred             ----CCceEEEEEEE
Confidence                45557788888

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=4.3e-12  Score=93.43  Aligned_cols=91  Identities=18%  Similarity=0.193  Sum_probs=71.0

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC-CceeEe-cCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP-LTSYSI-QDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      +|.+. ..+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +... ...... .......|.|.+++.+|.|.|+|.
T Consensus         8 ~P~~~-~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm2_A            8 APFFE-MKLKHYKIFEGMPVTFTCRVAGNPKP-KIYWFKDGKQ-ISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIM   84 (110)
T ss_dssp             CCCBS-SCCCCEEEETTCCEEEEEEBCCSSCC-EEEEECSSCB-CCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEE
T ss_pred             CCEEE-ecCcCeEEeCCCeEEEEEEEEecCCC-EEEEEECCEE-CCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEE
Confidence            44443 33456678999999999998899999 9999999988 6542 332222 223345799999999999999999


Q ss_pred             EEeCCCCCcccEEEEE
Q psy3823          89 ARNEQGNQRTPCTFHV  104 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V  104 (365)
                      |.|..|.....+.|.|
T Consensus        85 a~N~~g~~~~~~~l~V  100 (110)
T 2dm2_A           85 AANPQGRISCTGRLMV  100 (110)
T ss_dssp             EECTTCCEEECCCEEE
T ss_pred             EEECCCeEEEEEEEEE
Confidence            9999998888888888

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.35  E-value=7.2e-12  Score=88.60  Aligned_cols=87  Identities=17%  Similarity=0.219  Sum_probs=64.4

Q ss_pred             CCCceecCccc-eeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         222 DEPVCKQSQQR-IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       222 ~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      .+|.+..+... ...+..|+.+.|.|.+.+ |.+. +.|+++|.... ...+..+..++..+.|.|.+++.+|+|.|+|.
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~-v~W~k~g~~i~-~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~   79 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAP-VRWYKDGQEVE-ESDFVVLENEGPHRRLVLPATQPSDGGEFQCV   79 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSC-CEEEETTSCCC-CCSSCEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcE-EEEEECCEEee-eeeeeeEEecCCeEEEEeCCCChhhcEEEEEE
Confidence            45555544432 233568999999999865 8887 99999987543 44556666777888899999999999999999


Q ss_pred             EEcCCccceecEEEE
Q psy3823         301 ARNEQGSQRTPCTFH  315 (365)
Q Consensus       301 a~n~~g~~~~~~~l~  315 (365)
                      |.|.    +.++.|.
T Consensus        80 a~n~----~~~~~lt   90 (91)
T 2lvc_A           80 AGDE----CAYFTVT   90 (91)
T ss_dssp             CSSC----EEEEEEE
T ss_pred             Ecce----EEEEEEE
Confidence            9664    4455554

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.34  E-value=3.2e-12  Score=92.94  Aligned_cols=91  Identities=14%  Similarity=0.213  Sum_probs=69.5

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeE----ec-CCeEEEEEEccCCCCCC
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS----IQ-DGSTSVARYTPTSELEY   82 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~----~~-~~~~~~l~i~~~~~~d~   82 (365)
                      +.++|.......    ...|+.+.|.|.+.++|.+ .++|++++.. +........    .. ....+.|.|.+++.+|+
T Consensus         1 V~~pP~i~~~~~----~~~~~~~~~~c~v~G~P~P-~i~W~k~g~~-l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   74 (103)
T 1wwb_X            1 VHFAPTITFLES----PTSDHHWCIPFTVKGNPKP-ALQWFYNGAI-LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN   74 (103)
T ss_dssp             CCCCCCCCCCCC----CCCCCEEEEEEEEECSSCC-EEEEEETTEE-ECCCSSEEEEEEEECSSEEEEEEEEESCCGGGC
T ss_pred             CCCCCEEEeccC----ceECcEEEEEEEEEEeCCC-EEEEEECCEE-CCCCCcEeEEEEecCCcEEEEEEEECCCCcccC
Confidence            356666432211    2468899999999999999 9999999988 665543211    11 12345699999999999


Q ss_pred             eEEEEEEEeCCCCCcccEEEEE
Q psy3823          83 GTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        83 G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |.|+|.|.|..|....++.|.|
T Consensus        75 G~Y~C~A~N~~G~~~~~~~l~V   96 (103)
T 1wwb_X           75 GDYTLIAKNEYGKDEKQISAHF   96 (103)
T ss_dssp             EEEEEEEECSSCEEEEEEEECC
T ss_pred             EEEEEEEEeCCCcEeEEEEEEE
Confidence            9999999999999888899988

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.34  E-value=1.4e-11  Score=98.69  Aligned_cols=157  Identities=11%  Similarity=0.065  Sum_probs=100.1

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEe-CCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~-~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      ..+.+|+++.|+|.+.. +.+..+.|.. .++.......    .....|.|.+++. | |.|.|.+.. .+....+.++|
T Consensus         9 ~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~~----~~~~~l~l~~vs~-~-g~y~C~~~c-~~~~~~~~~~l   80 (185)
T 1iam_A            9 VILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPG----NNRKVYELSNVQE-D-SQPMCYSNC-PDGQSTAKTFL   80 (185)
T ss_dssp             EEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSSS----SSEEEEEEEEECS-C-BCCEEEEEC-SSCEEEEECEE
T ss_pred             cEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEeccC----CceeEEEEEecCc-C-CEEEEEEEC-CCCceEEEEEE
Confidence            35889999999999964 5555467763 1222110010    1124688999974 3 999999854 44455577888


Q ss_pred             EEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeee-CCCc-eeEEEeCCCCCCCCCCceeEeeCCCEEEEEE
Q psy3823         209 NINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDAN-PQAQ-YFTWAFNNSDTAPRPLTSYSIQDGSTSVARY  286 (365)
Q Consensus       209 ~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i  286 (365)
                      +|.          .+|...........+.+|+.++|.|.+.+. |.+. .|.|++++......    ..........|.+
T Consensus        81 ~V~----------~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~----~~~~~~~~~tl~~  146 (185)
T 1iam_A           81 TVY----------WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKRE----PAVGEPAEVTTTV  146 (185)
T ss_dssp             EEE----------BCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEE----ECCTTTEEEEEEE
T ss_pred             EEe----------CCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccc----cCCCccccEEEEE
Confidence            988          666654333222228899999999999885 5443 48999976532110    0011122335777


Q ss_pred             cCCCcccCeEEEEEEEcCCccc
Q psy3823         287 TPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       287 ~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      .....+|...|+|.|.|..+..
T Consensus       147 ~~~reD~g~~~sC~A~~~l~~~  168 (185)
T 1iam_A          147 LVRRDHHGAQFSCRTELDLRPQ  168 (185)
T ss_dssp             ECCSSCSSCEEEEEEEEECGGG
T ss_pred             eceeccCCCeEEEEEEecCccc
Confidence            7666666669999999998844

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.34  E-value=6.4e-12  Score=108.09  Aligned_cols=167  Identities=14%  Similarity=0.140  Sum_probs=101.2

Q ss_pred             eEEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCcC-C-------CCC----------CceeEe--cCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSGT-A-------PRP----------LTSYSI--QDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~~-l-------~~~----------~~~~~~--~~~~~~~l~i~~~   77 (365)
                      ....+.+|++++|.|...+  .... .+.|||..... .       ...          .+....  .......|.|.++
T Consensus        31 ~~~~~~~G~~v~L~C~~s~~~~~~~-~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  109 (267)
T 3u1s_H           31 GAEVKKPGSSVKVSCKASGNSFSNH-DVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGL  109 (267)
T ss_dssp             CCEEECTTCCEEEEEEEGGGGGGTS-EEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSC
T ss_pred             CCEEEeCCCcEEEEEEeeCCccCCC-EEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCC
Confidence            3467899999999999543  2334 89999853210 0       000          111111  1224457999999


Q ss_pred             CCCCCeEEEEEEEe-------CC------------C-C-----CcccEEEEEEeccccCCCCCCCeEEEEcCCccCccce
Q psy3823          78 SELEYGTLLCWARN-------EQ------------G-N-----QRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVL  132 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~-------~~------------~-~-----~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~  132 (365)
                      +.+|+|.|.|.+.+       ..            . .     ......|+|..     .+..+|.+......    ...
T Consensus       110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~-----~~~~~P~v~~~~~~----~~~  180 (267)
T 3u1s_H          110 TADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSS-----ASTKGPSVFPLAPS----SKS  180 (267)
T ss_dssp             CGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECC-----CCCBCCEEEEECCC----GGG
T ss_pred             ChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecC-----CCCCCCEEEEecCC----ccc
Confidence            99999999999861       11            0 0     11235666621     11345665533321    234


Q ss_pred             ecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeC--------CCCceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         133 NEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNN--------ASAGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       133 ~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      .+|+.++|.|.+.+ +|.+..+.|  ++..+...        ...+.......|.|.....+| +.|+|.+.|..+
T Consensus       181 ~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~  253 (267)
T 3u1s_H          181 TSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  253 (267)
T ss_dssp             EETTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGG
T ss_pred             CCCCcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCC
Confidence            67999999999997 454556999  55443210        111122223568888888888 999999998765

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.9e-12  Score=95.39  Aligned_cols=93  Identities=14%  Similarity=0.223  Sum_probs=74.0

Q ss_pred             ccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCcee-EecCCeEEEEEEccCCCCCCeEEEE
Q psy3823           9 TDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSY-SIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus         9 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      .++|.+.. .+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +....... .........|.|.+++.+|.|.|+|
T Consensus         7 ~~~P~i~~-~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm3_A            7 GFRPHFLQ-APGDLTVQEGKLCRMDCKVSGLPTP-DLSWQLDGKP-VRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTC   83 (110)
T ss_dssp             CCCCEEEE-CCCEEEEESSSCBCCEEEEECSSCC-EEECBBSSSB-CCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCE
T ss_pred             CCCCcEEe-CCCcEEEeCCCEEEEEEEEEEcCCC-EEEEEECCEE-CCCCCceEEEEecCCeEEEEEeeCCcccCEEEEE
Confidence            35666544 3456778999999999998889999 9999999988 65544332 2233334589999999999999999


Q ss_pred             EEEeCCCCCcccEEEEE
Q psy3823          88 WARNEQGNQRTPCTFHV  104 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V  104 (365)
                      .|.|..+.....+.|.|
T Consensus        84 ~a~n~~g~~~~~~~l~V  100 (110)
T 2dm3_A           84 IATNRAGQNSFSLELVV  100 (110)
T ss_dssp             EEECSSCEEEECCEEEE
T ss_pred             EEECCCCEEEEEEEEEE
Confidence            99999998888888888

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.34  E-value=1.3e-12  Score=97.57  Aligned_cols=88  Identities=9%  Similarity=-0.037  Sum_probs=64.9

Q ss_pred             CCceEEEEecCCcEEEEEEeCCC---CCcceEEEEeCCCcCCC--CCCceeEe------cCCeEEEEEEccCCCCCCeEE
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDAN---PQAQYFTWAFNNSGTAP--RPLTSYSI------QDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~---p~~~~v~W~~~~~~~l~--~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      .++....+.+|++++|.|...+.   |.+ .|.|||+....+.  ........      .......|.|.+++..|+|.|
T Consensus        12 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P-~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y   90 (126)
T 2dav_A           12 EKPQGGTVKVGEDITFIAKVKAEDLLRKP-TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY   90 (126)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCC-EEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred             EcCCCeEEeCCCCEEEEEEEeccCCCCCC-cEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEE
Confidence            34567778999999999996553   888 9999997522011  11221111      111346899999999999999


Q ss_pred             EEEEEeCCCCCcccEEEEEE
Q psy3823          86 LCWARNEQGNQRTPCTFHVV  105 (365)
Q Consensus        86 ~C~a~~~~~~~~~~~~l~V~  105 (365)
                      +|+|.|..+..+..+.|+|.
T Consensus        91 ~Cevsn~~g~~~~~~~L~V~  110 (126)
T 2dav_A           91 RCEVTYKDKFDSCSFDLEVH  110 (126)
T ss_dssp             EEEEECSSCEEEECCEEEEE
T ss_pred             EEEEEeCCCcEEEEEEEEEE
Confidence            99999999888899999993

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1.2e-12  Score=94.52  Aligned_cols=91  Identities=15%  Similarity=0.276  Sum_probs=70.6

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      +..+|.+... +....+.+|+.+.|.|.+.+.|.+ .+.|++++.. +.......   ......|.|.+++.+|+|.|+|
T Consensus         8 ~~~~P~~~~~-~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~-~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C   81 (99)
T 2yr3_A            8 MEVAPSFSSV-LKDCAVIEGQDFVLQCSVRGTPVP-RITWLLNGQP-IQYARSTC---EAGVAELHIQDALPEDHGTYTC   81 (99)
T ss_dssp             CCEEEEEEEC-CCCEEECTTCCEEEECEEEEESCC-CCEEEESSSB-CSSCCCEE---ETTEEEEEECSCCTTCCBCEEE
T ss_pred             cccCCceeec-CCCCEEeCCCeEEEEEEEeeeCCC-eEEEEECCEE-CcccceEe---eCCeEEEEECCCChhhCEEEEE
Confidence            4455655443 445678999999999998889999 9999999988 66444322   1224589999999999999999


Q ss_pred             EEEeCCCCCcccEEEEE
Q psy3823          88 WARNEQGNQRTPCTFHV  104 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V  104 (365)
                      .|.|..|.....+.|.|
T Consensus        82 ~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           82 LAENALGQVSCSAWVTV   98 (99)
T ss_dssp             EEECSSCEEEEECCEEE
T ss_pred             EEEECCCeEEEEEEEEE
Confidence            99999988776666665

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.34  E-value=5.1e-12  Score=94.33  Aligned_cols=77  Identities=16%  Similarity=0.245  Sum_probs=64.0

Q ss_pred             cCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeE--ec-----CCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS--IQ-----DGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        26 ~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~--~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      .+..+.|.|.+.|+|.| .++|+|||.. +........  ..     ......|.|.+++..|+|.|+|.|.|..|....
T Consensus        14 ~~~~~~l~c~v~G~P~P-~I~W~knG~~-l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~   91 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAP-SLRWLFNGSV-LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA   91 (126)
T ss_dssp             CCCEEEEEEEECCSSCC-EEEEEETTEE-CCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cCccEEEEEEEeeeCCC-eEEEEECCEE-CCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence            67889999999999999 9999999998 766544221  11     123468999999999999999999999999888


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      ++.|.|
T Consensus        92 t~~l~v   97 (126)
T 1he7_A           92 SIMAAF   97 (126)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            888887

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.34  E-value=1.3e-12  Score=94.51  Aligned_cols=83  Identities=16%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             eeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         233 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       233 ~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      ...+..|+.+.|.|.+.|.|.+. +.|+++|....................|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus        17 ~~~v~~G~~v~l~C~~~g~p~p~-v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   95 (100)
T 3caf_A           17 LHAVPAANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   95 (100)
T ss_dssp             EEEECTTCCEEEECCEEEESCCE-EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEecCCCEEEEEEEccccCCCE-EEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEE
Confidence            34488999999999999999998 99999886443221111111111223599999999999999999999999988888


Q ss_pred             EEEE
Q psy3823         313 TFHV  316 (365)
Q Consensus       313 ~l~v  316 (365)
                      .|.|
T Consensus        96 ~l~V   99 (100)
T 3caf_A           96 HLDV   99 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8876

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.33  E-value=5e-12  Score=89.93  Aligned_cols=80  Identities=13%  Similarity=0.112  Sum_probs=63.3

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      ......+.+|+.++|.|.+.+ |.+ .++|+|++.. +..........++...+|.|.+++.+|+|.|+|.|.|.    .
T Consensus        11 ~~~~~~v~~G~~v~l~C~v~~-~~~-~v~W~k~g~~-i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~   83 (93)
T 1waa_A           11 PLYGVEVFVGETAHFEIELSE-PDV-HGQWKLKGQP-LAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT----K   83 (93)
T ss_dssp             CCCCEEEETTSCEEEEEEESS-SSC-CCEEEETTEE-CCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE----E
T ss_pred             cCcceEEeCCCCEEEEEEECC-CCC-eEEEEECCEE-CcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC----c
Confidence            344567899999999999865 567 8999999998 76655545555566678999999999999999999763    3


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      .+..|.|
T Consensus        84 ~sa~L~V   90 (93)
T 1waa_A           84 SAANLKV   90 (93)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5666666

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.33  E-value=5.3e-12  Score=90.30  Aligned_cols=82  Identities=9%  Similarity=0.127  Sum_probs=66.2

Q ss_pred             eCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          16 QSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        16 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ...+....+.+|+.+.|.|.+.+.| + .+.|++++.. +........ .++   .|.|.+++.+|+|.|+|.|.|..|.
T Consensus        13 ~~~~~~~~v~~G~~v~l~C~~~g~p-p-~i~W~k~g~~-~~~~~~~~~-~~~---~L~i~~~~~~D~G~Y~C~a~n~~g~   85 (95)
T 2ckn_A           13 PVEVESLLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQ-LVESNRTRI-TGE---EVEVRDSIPADSGLYACVTSSPSGS   85 (95)
T ss_dssp             TTBBCCEEECTTSCEEEECCEESSC-C-EEEEEBTTBC-CCCCSSEEE-CSS---EEEESSCCGGGSEEEEEEEEETTEE
T ss_pred             EcCcceEEEcCCCeEEEEEECCCCC-C-ceEEEECCEe-cCCCCCEEE-eCC---EEEECCCChHHCEEEEEEeccCCCc
Confidence            3445667889999999999987777 7 9999999987 654443222 333   8999999999999999999999888


Q ss_pred             CcccEEEEE
Q psy3823          96 QRTPCTFHV  104 (365)
Q Consensus        96 ~~~~~~l~V  104 (365)
                      ....+.|.|
T Consensus        86 ~~~~~~l~V   94 (95)
T 2ckn_A           86 DTTYFSVNV   94 (95)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            777777776

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.32  E-value=7.4e-11  Score=105.29  Aligned_cols=172  Identities=17%  Similarity=0.239  Sum_probs=105.8

Q ss_pred             cceecCCcEEEEEEEEecCC-------------CCeeEEEe--CCe--EE-ee-CC--------CCc-------------
Q psy3823         130 SVLNEGVDIYFDCHIQANPP-------------YKKLIWTH--NGI--TI-SN-NA--------SAG-------------  169 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~-------------~~~i~W~~--~~~--~l-~~-~~--------~~~-------------  169 (365)
                      ..+.+|++++|.|.....+.             ...+.||+  .|.  .+ .. ..        ..+             
T Consensus       168 v~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~~~~  247 (401)
T 3f8u_B          168 PRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPW  247 (401)
T ss_dssp             CEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCCCSS
T ss_pred             EEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecccccc
Confidence            46789999999999875431             34589996  332  11 11 10        001             


Q ss_pred             -eEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEEEeeeeecccccCCCCceecCccceeeeecCc-eEEEEEE
Q psy3823         170 -RIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNE-QVLVSCT  247 (365)
Q Consensus       170 -~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~-~~~l~C~  247 (365)
                       ....+.+|.|.+++..|+|.|.|.+.+..+... ..+.|.|.          .+|.+.........+..|+ .++|.|.
T Consensus       248 g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~-~~v~L~V~----------~pP~V~v~p~~~~~~~~G~~~vtL~C~  316 (401)
T 3f8u_B          248 GPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQ-VTLELAVY----------KPPKVSLMPATLARAAPGEAPPELLCL  316 (401)
T ss_dssp             CCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEE-EEEEEEEE----------BCCEEEEESSSCCCCCTTCCCCCEEEE
T ss_pred             cccCCcEEEEECcCCHhhCceEEEEEEeccccee-EEEEEeec----------cCCeEeeccCcceeecCCCccEEEEEE
Confidence             112367899999999999999999998766443 56778888          7777654332221134676 7999999


Q ss_pred             Eeee-CC--CceeEEE-eCCC-CCCCCCC------ceeEeeCCCE---EEEEEcCCCccc-CeEEEEEEEcCC---ccce
Q psy3823         248 VDAN-PQ--AQYFTWA-FNNS-DTAPRPL------TSYSIQDGST---SVARYTPTSELE-YGTLLCWARNEQ---GSQR  309 (365)
Q Consensus       248 ~~~~-p~--~~~~~W~-~~~~-~~~~~~~------~~~~~~~~~~---s~l~i~~v~~~d-~G~Y~C~a~n~~---g~~~  309 (365)
                      +.++ |.  +. +.|. +++. .......      ......++..   +.|.+...+.++ .+.|+|.+.|..   |..+
T Consensus       317 a~GfyP~~~~~-VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs  395 (401)
T 3f8u_B          317 VSHFYPSGGLE-VEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRS  395 (401)
T ss_dssp             EEEEBSSTTCE-EEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEE
T ss_pred             ecCCcCCCCcE-EEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcce
Confidence            9986 54  45 9995 7652 1111111      1112334443   346665554334 459999999976   4444


Q ss_pred             ecEE
Q psy3823         310 TPCT  313 (365)
Q Consensus       310 ~~~~  313 (365)
                      .+++
T Consensus       396 ~sVt  399 (401)
T 3f8u_B          396 AEVT  399 (401)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.32  E-value=2e-11  Score=86.83  Aligned_cols=89  Identities=12%  Similarity=0.135  Sum_probs=66.8

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+....... .+.+|+.+.|.|.+.+ +++. +.|+++|.... ...+..+..++..+.|.|.+++.+|+|.|+|.|
T Consensus         4 ~~~~~~~~~~~~-~v~~G~~v~l~C~v~~-~~~~-v~W~k~g~~i~-~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a   79 (93)
T 1waa_A            4 ALIEVEKPLYGV-EVFVGETAHFEIELSE-PDVH-GQWKLKGQPLA-ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQA   79 (93)
T ss_dssp             CCCCEEECCCCE-EEETTSCEEEEEEESS-SSCC-CEEEETTEECC-CBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCcEeeccCcce-EEeCCCCEEEEEEECC-CCCe-EEEEECCEECc-CCCCEEEEEECCEEEEEECCCChhhCEEEEEEE
Confidence            345555544443 3899999999999975 5577 99999987543 334556666777788999999999999999999


Q ss_pred             EcCCccceecEEEEEEc
Q psy3823         302 RNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~~  318 (365)
                      .|.    ..+..|.|..
T Consensus        80 ~n~----~~sa~L~V~~   92 (93)
T 1waa_A           80 ANT----KSAANLKVKE   92 (93)
T ss_dssp             TTE----EEEEEEEEEC
T ss_pred             CCC----cEEEEEEEEc
Confidence            884    3456676653

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.32  E-value=5.1e-12  Score=87.89  Aligned_cols=78  Identities=15%  Similarity=0.150  Sum_probs=62.2

Q ss_pred             eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      +.+.+|+.+.|.|.+.+ |.|. +.|+++|.... ......+..++..+.|.|.+++.+|+|.|+|.|.|    .+.++.
T Consensus         6 v~~~~G~~v~l~C~vs~-p~p~-v~W~k~g~~l~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~   78 (84)
T 2lu7_A            6 VRSTPGGDLELVVHLSG-PGGP-VRWYKDGERLA-SQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFL   78 (84)
T ss_dssp             EEECTTSCEEEECCCSC-CSTT-CEEEETTEECC-CCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEE
T ss_pred             EEEecCCCEEEEEEECC-CCcE-EEEEECCEEcc-ccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEE
Confidence            34889999999999865 8888 99999987543 34556666677778899999999999999999844    556677


Q ss_pred             EEEEc
Q psy3823         314 FHVVK  318 (365)
Q Consensus       314 l~v~~  318 (365)
                      |.|..
T Consensus        79 l~V~e   83 (84)
T 2lu7_A           79 VSVEE   83 (84)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            77753

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.7e-12  Score=92.78  Aligned_cols=91  Identities=10%  Similarity=0.166  Sum_probs=68.0

Q ss_pred             ccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823           9 TDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus         9 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      ...|..+........+.+|+.++|.|.+.+.|.+..+.|+|++.. +..........++...+|.|.+++.+|+|.|+|.
T Consensus         5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~-i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T 2eny_A            5 SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKT-VGSSSRFQATRQGRKYILVVREAAPSDAGEVVFS   83 (104)
T ss_dssp             CCCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSB-CSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEE
T ss_pred             ccCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEE-CCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEE
Confidence            344444444556678899999999999777664327999999998 7655554444556667899999999999999998


Q ss_pred             EEeCCCCCcccEEEEE
Q psy3823          89 ARNEQGNQRTPCTFHV  104 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V  104 (365)
                      |.+    ...+..|.|
T Consensus        84 a~~----~~~~a~L~V   95 (104)
T 2eny_A           84 VRG----LTSKASLIV   95 (104)
T ss_dssp             ETT----EEEEECEEE
T ss_pred             ECC----eeEEEEEEE
Confidence            753    346677777

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.31  E-value=1.1e-11  Score=91.00  Aligned_cols=93  Identities=9%  Similarity=-0.059  Sum_probs=65.7

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCC---CceeEEEeCCCCCCCC--CCceeEe----e--CCCEEEEEEcCCCc
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQ---AQYFTWAFNNSDTAPR--PLTSYSI----Q--DGSTSVARYTPTSE  291 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~~~~W~~~~~~~~~~--~~~~~~~----~--~~~~s~l~i~~v~~  291 (365)
                      .|.+...+.. ..+..|+.++|.|.+.|.|.   |. +.|++++......  .....+.    .  ......|.|.+++.
T Consensus         4 ~p~f~~~p~~-~~v~~G~~v~L~C~~~g~p~~~~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   81 (108)
T 3cx2_A            4 IGLFVMRPQD-GEVTVGGSITFSARVAGASLLKPPV-VKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP   81 (108)
T ss_dssp             CCSCSBCCCC-EEEETTCCEEEEEEEECC-CCSCCE-EEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCG
T ss_pred             ccEEEeCCCc-EEEeCCCCEEEEEEECCCccCCCcE-EEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCC
Confidence            3444443333 33889999999999999988   87 9999976211100  1111111    0  11246799999999


Q ss_pred             ccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         292 LEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       292 ~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      +|+|.|+|.|.|..|..+..+.|.|.
T Consensus        82 ~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           82 AFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ccCEEEEEEEecCCCceEEEEEEEEe
Confidence            99999999999999999999999885

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.31  E-value=8.2e-12  Score=97.96  Aligned_cols=94  Identities=11%  Similarity=0.142  Sum_probs=74.7

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEe-cCCeEEEEEEccCCCCCCeEEE
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI-QDGSTSVARYTPTSELEYGTLL   86 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~   86 (365)
                      +..+|.+... +....+.+|+.++|.|.+.+.|.+ .+.|++++.. +......... .......|.|.+++..|.|.|+
T Consensus        38 v~~~P~~~~~-~~~~~v~~G~~v~L~C~~~g~P~p-~v~W~k~g~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  114 (154)
T 1fhg_A           38 PHVKPYFTKT-ILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNP-VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT  114 (154)
T ss_dssp             CCEEEEEEEC-CCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEE-CCCSSSEEEEECTTCEEEEEESSCCGGGCEEEE
T ss_pred             CCCCCeEEcc-CCcEEEeCCCeEEEEEEEEEecCC-EEEEEECCEE-CCCCCcEEEEECCCCeEEEEECCCChhcCEEEE
Confidence            4455665543 344678999999999998889999 9999999988 6655443332 2233468999999999999999


Q ss_pred             EEEEeCCCCCcccEEEEE
Q psy3823          87 CWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        87 C~a~~~~~~~~~~~~l~V  104 (365)
                      |.|.|..|.....+.|.|
T Consensus       115 C~a~N~~G~~~~~~~l~V  132 (154)
T 1fhg_A          115 CKAVNSLGEATCTAELLV  132 (154)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCeEEEEEEEEE
Confidence            999999998888888888

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.30  E-value=1.4e-11  Score=91.98  Aligned_cols=82  Identities=15%  Similarity=0.234  Sum_probs=63.3

Q ss_pred             ecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCcee-Eee---C--CCEEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823         237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSY-SIQ---D--GSTSVARYTPTSELEYGTLLCWARNEQGSQRT  310 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~-~~~---~--~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~  310 (365)
                      ..+..+.|.|.+.|.|.|. +.|+++|........... +..   +  .....|.|.++..+|+|.|+|.|.|.+|....
T Consensus        13 ~~~~~~~l~c~v~G~P~P~-I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~   91 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA   91 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCE-EEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ccCccEEEEEEEeeeCCCe-EEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence            3578899999999999998 999999875433222111 111   1  12457999999999999999999999999988


Q ss_pred             cEEEEEEcC
Q psy3823         311 PCTFHVVKA  319 (365)
Q Consensus       311 ~~~l~v~~~  319 (365)
                      ++.|.|...
T Consensus        92 t~~l~v~~~  100 (126)
T 1he7_A           92 SIMAAFMDN  100 (126)
T ss_dssp             EEEECCCSC
T ss_pred             EEEEEEEcC
Confidence            888877644

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-11  Score=90.99  Aligned_cols=92  Identities=17%  Similarity=0.218  Sum_probs=68.7

Q ss_pred             EeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823           5 IFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus         5 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      .+.+...|......+....+.+|+++.|.|.+.+.  + .++|+|++.. +..........++....|.|.+++.+|+|.
T Consensus        12 ~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p-~v~W~k~~~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (113)
T 2edh_A           12 MLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--A-PVEWWKGHET-LRDGDRHSLRQDGARCELQIRGLVAEDAGE   87 (113)
T ss_dssp             CCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--C-CCEEEESSSB-CCCSSSEEEEEETTEEEEEECSCCSTTCEE
T ss_pred             EEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--C-cEEEEECCEE-CCCCCcEEEEECCCEEEEEECCCChhhCEE
Confidence            34455554333333445678999999999998653  6 7999999998 765555444455566789999999999999


Q ss_pred             EEEEEEeCCCCCcccEEEEE
Q psy3823          85 LLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        85 Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |+|.|    +.....+.|.|
T Consensus        88 Y~C~a----~~~~~~~~l~V  103 (113)
T 2edh_A           88 YLCMC----GKERTSAMLTV  103 (113)
T ss_dssp             EEEEE----TTEEEEEEEEE
T ss_pred             EEEEe----CCCCEEEEEEE
Confidence            99999    45557788888

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=7e-12  Score=91.08  Aligned_cols=80  Identities=13%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+....+.+|+.++|.|.+.+ |.+ .+.|++++.. +..........++....|.|.+++.+|+|.|+|.|.|    ..
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~-~~~-~v~W~k~g~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~   86 (103)
T 2edf_A           14 PLEDQWVAPGEDVELRCELSR-AGT-PVHWLKDRKA-IRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA----SK   86 (103)
T ss_dssp             CCCCEEECTTSCEEECCEESS-SSC-CCCEEESSCB-CCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS----CE
T ss_pred             cCCccEEcCCCCEEEEEEEeC-CCC-cEEEEECCEE-ccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc----CC
Confidence            344577899999999999876 788 9999999988 7655554444555567899999999999999999988    35


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      ..+.|.|
T Consensus        87 ~~~~l~V   93 (103)
T 2edf_A           87 STASLHV   93 (103)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            7788888

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.30  E-value=7.4e-12  Score=91.00  Aligned_cols=88  Identities=13%  Similarity=0.112  Sum_probs=67.1

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC--ceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      .+|..+...+....+.+|+.++|.|.+.+ |.+ .+.|+|++.. +....  ......++....|.|.+++.+|+|.|+|
T Consensus         5 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~-~v~W~k~g~~-l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   81 (103)
T 1x44_A            5 SSGIMVTKQLEDTTAYCGERVELECEVSE-DDA-NVKWFKNGEE-IIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSV   81 (103)
T ss_dssp             CSSCCCSBCCCCEEEETTEEEEEEEECSS-SSC-CCEEEETTEE-CCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEE
T ss_pred             CCCceeeccCCCEEEECCCCEEEEEEecC-CCC-eEEEEECCEE-CCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEE
Confidence            34543444555677899999999999865 777 9999999988 66554  3244445556789999999999999999


Q ss_pred             EEEeCCCCCcccEEEEE
Q psy3823          88 WARNEQGNQRTPCTFHV  104 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V  104 (365)
                      .|.|    ....+.|.|
T Consensus        82 ~a~n----~~~~~~l~V   94 (103)
T 1x44_A           82 MTTG----GQSSAKLSV   94 (103)
T ss_dssp             EETT----EEEEEEEEE
T ss_pred             EECC----CcEEEEEEE
Confidence            9976    346677777

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.29  E-value=1.6e-11  Score=89.32  Aligned_cols=88  Identities=10%  Similarity=0.154  Sum_probs=66.2

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC-CceeEecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      .+|.+....+....+.+|+.+.|.|.+ +.|.+ .++|++++.. +... .......++....|.|.+++.+|+|.|+|.
T Consensus        14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~-~v~W~k~g~~-l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   90 (104)
T 1pd6_A           14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDA-EVKWLKNGQE-IQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV   90 (104)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEEC-SSSSS-CCEEEESSSE-ECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEE
T ss_pred             CCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCC-EEEEEECCEE-CCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEE
Confidence            345555545555788999999999998 68888 8999999998 6654 333334445566899999999999999999


Q ss_pred             EEeCCCCCcccEEEEE
Q psy3823          89 ARNEQGNQRTPCTFHV  104 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V  104 (365)
                      |.    .......|.|
T Consensus        91 a~----~~~~~~~l~V  102 (104)
T 1pd6_A           91 VG----GEKCSTELFV  102 (104)
T ss_dssp             ET----TEEECCEEEE
T ss_pred             EC----CCcEEEEEEE
Confidence            83    2335555655

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.29  E-value=8.3e-12  Score=90.73  Aligned_cols=92  Identities=14%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCce--eEee---CCCEEEEEEcCCCcccCeE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS--YSIQ---DGSTSVARYTPTSELEYGT  296 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~--~~~~---~~~~s~l~i~~v~~~d~G~  296 (365)
                      ++|.+.....    ...++.+.|.|.+.|.|.|. +.|+++|...... ...  .+..   ....+.|.|.+++.+|+|.
T Consensus         3 ~pP~i~~~~~----~~~~~~~~~~c~v~G~P~P~-i~W~k~g~~l~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   76 (103)
T 1wwb_X            3 FAPTITFLES----PTSDHHWCIPFTVKGNPKPA-LQWFYNGAILNES-KYICTKIHVTNHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCCCCCCC----CCCCCEEEEEEEEECSSCCE-EEEEETTEEECCC-SSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             CCCEEEeccC----ceECcEEEEEEEEEEeCCCE-EEEEECCEECCCC-CcEeEEEEecCCcEEEEEEEECCCCcccCEE
Confidence            5666542221    34578899999999999998 9999998754332 221  1111   1123569999999999999


Q ss_pred             EEEEEEcCCccceecEEEEEEcC
Q psy3823         297 LLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       297 Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      |+|.|.|..|..+.++.|.|...
T Consensus        77 Y~C~A~N~~G~~~~~~~l~V~~~   99 (103)
T 1wwb_X           77 YTLIAKNEYGKDEKQISAHFMGW   99 (103)
T ss_dssp             EEEEEECSSCEEEEEEEECCSCC
T ss_pred             EEEEEEeCCCcEeEEEEEEECCC
Confidence            99999999999999888887644

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=4e-12  Score=92.09  Aligned_cols=80  Identities=13%  Similarity=0.129  Sum_probs=62.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC----ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL----TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      .+....+.+|+.+.|.|.+.+.| + .++|++++.. +....    +.....++....|.|.+++.+|+|.|+|.|.+  
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~-~-~v~W~k~g~~-i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--   88 (101)
T 2edk_A           14 PLEDQQVFVGDRVEMAVEVSEEG-A-QVMWMKNGVE-LTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG--   88 (101)
T ss_dssp             CCCCEEEESSCCCBCCEEESCSS-C-CCEEEESSCB-CCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS--
T ss_pred             cCCceEEcCCCCEEEEEEEeCCC-C-EEEEEECCEE-CCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC--
Confidence            44557789999999999988878 7 9999999988 65544    22444556667899999999999999999886  


Q ss_pred             CCCcccEEEEE
Q psy3823          94 GNQRTPCTFHV  104 (365)
Q Consensus        94 ~~~~~~~~l~V  104 (365)
                        ......|.|
T Consensus        89 --~~~~~~l~V   97 (101)
T 2edk_A           89 --GQCEAELIV   97 (101)
T ss_dssp             --CEECCBEEE
T ss_pred             --CcEEEEEEE
Confidence              334556666

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.28  E-value=7.3e-12  Score=93.47  Aligned_cols=94  Identities=14%  Similarity=0.128  Sum_probs=70.2

Q ss_pred             EeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEe--c--CCeEEEEEEccCCCC
Q psy3823           5 IFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI--Q--DGSTSVARYTPTSEL   80 (365)
Q Consensus         5 ~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~--~--~~~~~~l~i~~~~~~   80 (365)
                      .+.+.++|.........    ..+...|.|.+.++|.+ .++|++++.. +.........  .  ......|.|.+++.+
T Consensus         2 ~L~V~~pP~i~~~~~~~----~~~~~~l~C~~~g~P~p-~i~W~k~g~~-l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   75 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEPE----LRLEHCIEFVVRGNPPP-TLHWLHNGQP-LRESKIIHVEYYQEGEISEGCLLFNKPTHY   75 (118)
T ss_dssp             --CCCCCCCCCCCCCCC----CCCEEEEEEEEECSSCC-EEEEEETTEE-CCCSSSEEEEEEECSSEEEEEEEEESCCGG
T ss_pred             EEEEecCCceeccCCCe----eccceEEEEEeeeeCCC-eEEEEECCEE-CCCCCceeEEEeccCccccEEEEECCCChh
Confidence            45677888765442222    22667899998899999 9999999988 6655433221  1  124558999999999


Q ss_pred             CCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          81 EYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |+|.|+|.|.|..|.....+.|.|
T Consensus        76 d~G~Y~C~a~N~~G~~~~~~~l~v   99 (118)
T 1wwc_A           76 NNGNYTLIAKNPLGTANQTINGHF   99 (118)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEECC
T ss_pred             cCEEEEEEEECCCCeEeeEEEEEE
Confidence            999999999999998888888887

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.28  E-value=1.8e-12  Score=93.72  Aligned_cols=90  Identities=16%  Similarity=0.232  Sum_probs=68.7

Q ss_pred             CCeEeeC---CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce---eEecCCeEEEEEEccCCCCCCeE
Q psy3823          11 EPVCKQS---QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        11 ~p~~~~~---~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      +|.+...   .+..+.+.+|+.+.|.|.+.+.|.+ .+.|++++.. +......   ....+  ...|.|.+++.+|+|.
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~-~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~   79 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKE-FKQEHRIGGYKVRNQ--HWSLIMESVVPSDKGN   79 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCC-EEEEEETTEE-CCGGGSTTCCEEEGG--GTEEEECSCCGGGCEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCC-EEEEEECCEE-cccccccccEEEecC--eEEEEEccCCcCCCEE
Confidence            4555432   2467888999999999998888999 9999999987 5433221   11111  1379999999999999


Q ss_pred             EEEEEEeCCCCCcccEEEEE
Q psy3823          85 LLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        85 Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |+|.|.|..|.....+.|.|
T Consensus        80 Y~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           80 YTCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEeCCCEEEEEEEEEE
Confidence            99999999988777777776

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.28  E-value=7.3e-13  Score=99.62  Aligned_cols=104  Identities=16%  Similarity=0.276  Sum_probs=77.6

Q ss_pred             ccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-CCceeE--e--eC
Q psy3823         204 TPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-PLTSYS--I--QD  278 (365)
Q Consensus       204 ~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-~~~~~~--~--~~  278 (365)
                      ..+.|.|.          .+|.+.. . ....+..|+.+.|.|.+.+.|.|..+.|++++...... ..++.+  .  .+
T Consensus         5 ~~~~l~V~----------~~P~i~~-~-~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~   72 (122)
T 2cry_A            5 SSGTLTVN----------GPPIISS-T-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE   72 (122)
T ss_dssp             CCCCCCCC----------SSCCEEE-E-CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETT
T ss_pred             eEEEEEEe----------cCCCccC-C-CeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCC
Confidence            34556666          8888776 3 33348899999999999999988559999998754331 122322  1  12


Q ss_pred             CCEEEEEEcCCCcccC-eEEEEEEEcCCccceecEEEEEEcC
Q psy3823         279 GSTSVARYTPTSELEY-GTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       279 ~~~s~l~i~~v~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      +..+.|.|.+++.+|. |.|+|.|.|..|.....+.|.|...
T Consensus        73 ~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~  114 (122)
T 2cry_A           73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS  114 (122)
T ss_dssp             EEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred             ceEEEEEEcCCChhhCCceEEEEEECCCCeEEEEEEEEECCC
Confidence            2266899999999998 9999999999999988888877643

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.28  E-value=1.4e-11  Score=92.41  Aligned_cols=92  Identities=16%  Similarity=0.182  Sum_probs=66.2

Q ss_pred             EEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCcCCCC-----CCceeEecC---CeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          21 IYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSGTAPR-----PLTSYSIQD---GSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~~l~~-----~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      .+.+.+|+.++|.|.+.+  .|.+ .+.|++++.. +..     .........   ...+.|.|.+++.+|+|.|+|.|.
T Consensus        17 ~v~v~~G~~v~L~C~~~g~p~~~~-~i~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           17 GIELSVGEKLVLNCTARTELNVGI-DFNWEYPSSK-HQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             CEEEEETCCEEEEEEEEECTTCCC-EEEEECSCTT-CCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEecCCeEEEEEEEEcCCCCcE-EEEEECCCcc-cCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            356789999999999766  4445 8999999875 431     111111111   244589999999999999999999


Q ss_pred             eCCCCCcccEEEEEEeccccCCCCCCCeEEEEc
Q psy3823          91 NEQGNQRTPCTFHVVKAGECEHPVDKPSVQIKL  123 (365)
Q Consensus        91 ~~~~~~~~~~~l~V~~~~~~~~~~~~p~~~~~~  123 (365)
                      |..|.....+.|.|         ..+|.+.+.+
T Consensus        95 n~~g~~~~~~~l~V---------~~~p~i~~~p  118 (122)
T 3s35_X           95 SGLMTKKNSTFVRV---------HEKPFVAFGS  118 (122)
T ss_dssp             CSSCEEEEEEEEEE---------EEEECC----
T ss_pred             cCCCceEEEEEEEE---------eccCeEEeec
Confidence            99998888899999         5667665543

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.28  E-value=1.7e-11  Score=87.57  Aligned_cols=80  Identities=10%  Similarity=0.136  Sum_probs=63.4

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+....+.+|+.+.|.|.+ +.|.+ .+.|++++.. +..........++....|.|.+++.+|+|.|+|.|    +...
T Consensus        14 ~~~~~~v~~G~~v~l~C~~-~~p~~-~v~W~k~~~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~   86 (95)
T 2k1m_A           14 KPRSVEVAAGSPAVFEAET-ERAGV-KVRWQRGGSD-ISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSK   86 (95)
T ss_dssp             CCCCEEEETTSCEEEEEEC-SSSSC-CCEEECSSSE-ECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEE
T ss_pred             CCCcEEEeCCCcEEEEEEe-CCCCC-eEEEEECCEE-CCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCce
Confidence            3456778999999999999 77888 9999999988 66554444445555678999999999999999998    3444


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      ..+.|.|
T Consensus        87 ~~~~l~V   93 (95)
T 2k1m_A           87 VKFDLKV   93 (95)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5667766

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.27  E-value=2.2e-11  Score=87.06  Aligned_cols=87  Identities=9%  Similarity=0.112  Sum_probs=65.6

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+...+.. ..+..|+.+.|.|.+.+.| +. +.|+++|..... ..+..+.    ...|.|.+++.+|+|.|+|.|
T Consensus         8 ~pp~~~~~~~~-~~v~~G~~v~l~C~~~g~p-p~-i~W~k~g~~~~~-~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a   79 (95)
T 2ckn_A            8 QPWGVPVEVES-LLVHPGDLLQLRCRLRDDV-QS-INWLRDGVQLVE-SNRTRIT----GEEVEVRDSIPADSGLYACVT   79 (95)
T ss_dssp             CSCCBTTBBCC-EEECTTSCEEEECCEESSC-CE-EEEEBTTBCCCC-CSSEEEC----SSEEEESSCCGGGSEEEEEEE
T ss_pred             CCCEEEcCcce-EEEcCCCeEEEEEECCCCC-Cc-eEEEECCEecCC-CCCEEEe----CCEEEECCCChHHCEEEEEEe
Confidence            44555444333 3488999999999999987 66 999998764432 2222222    235999999999999999999


Q ss_pred             EcCCccceecEEEEE
Q psy3823         302 RNEQGSQRTPCTFHV  316 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v  316 (365)
                      .|..|..+..+.|.|
T Consensus        80 ~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           80 SSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             ccCCCcEEEEEEEEE
Confidence            999999888887776

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.27  E-value=1.5e-11  Score=87.14  Aligned_cols=74  Identities=18%  Similarity=0.377  Sum_probs=62.5

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      ..+.+|+.+.|.|.+.|.|.+. +.|++++..+....       ...|.|.+++..|+|.|+|.+.|..|...+..+.|.
T Consensus        13 ~~v~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~   84 (91)
T 3bfo_A           13 QKLMPGSTLVLQCVAVGSPIPH-YQWFKNELPLTHET-------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII   84 (91)
T ss_dssp             EEECTTSCEEEECEEECSSCCE-EEEEETTEECTTCC-------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEE
T ss_pred             cEecCCCcEEEEEEeccCCCCE-EEEEcCCeeCCcCC-------CCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEE
Confidence            4578999999999999998886 99999998876432       358999999999999999999999986555667777


Q ss_pred             Ee
Q psy3823         210 IN  211 (365)
Q Consensus       210 v~  211 (365)
                      |.
T Consensus        85 V~   86 (91)
T 3bfo_A           85 ID   86 (91)
T ss_dssp             EC
T ss_pred             Ee
Confidence            65

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2e-12  Score=95.54  Aligned_cols=94  Identities=6%  Similarity=-0.069  Sum_probs=68.3

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCC---CCcceEEEEeCCCcCCCCC--CceeEe------cCCeEEEEEEccCC
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDAN---PQAQYFTWAFNNSGTAPRP--LTSYSI------QDGSTSVARYTPTS   78 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~---p~~~~v~W~~~~~~~l~~~--~~~~~~------~~~~~~~l~i~~~~   78 (365)
                      .++..+...+....+.+|++++|.|...+.   |.+ .|+|||+....+...  ......      .......|.|.+++
T Consensus        10 ~~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P-~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   88 (118)
T 2edn_A           10 EPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKP-TIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVV   88 (118)
T ss_dssp             CCSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCC-CCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCC
T ss_pred             CCcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCC-cEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCC
Confidence            334444455677889999999999996554   788 999999753212221  111111      11135689999999


Q ss_pred             CCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          79 ELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      ..|+|.|+|+|.+..+..+..+.|+|
T Consensus        89 ~~D~G~Y~Cevsn~~g~~s~~~~L~V  114 (118)
T 2edn_A           89 LGDRGYYRLEVKAKDTCDSCGFNIDV  114 (118)
T ss_dssp             TTTCSCEEEEEECSSCEEEEEECCEE
T ss_pred             hhhCEEEEEEEEEcCCcEEEEEEEEE
Confidence            99999999999999998878888888

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=3.6e-12  Score=94.74  Aligned_cols=93  Identities=14%  Similarity=0.110  Sum_probs=70.0

Q ss_pred             eecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEe-cCCeEEEEEEccCCCCCCeE
Q psy3823           6 FNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI-QDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus         6 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~   84 (365)
                      +.+...|..+...+....+.+|+.++|.|.+.+.|.+ .++|++++.. +......... .++....|.|.+++.+|+|.
T Consensus         7 l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~-l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   84 (115)
T 2cr6_A            7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYE-PVHWFLDKTP-LHANELNEIDAQPGGYHVLTLRQLALKDSGT   84 (115)
T ss_dssp             CCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCC-SCEEEESSCE-ECCSSSCCBCCBTTTBCCBEECSCCTTTCEE
T ss_pred             EEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCC-ccEEEECCEE-CCCCCcEEEEEcCCCEEEEEEcCCChhhCEE
Confidence            3455555444445567788999999999998888998 9999999988 6554432222 23444579999999999999


Q ss_pred             EEEEEEeCCCCCcccEEEEE
Q psy3823          85 LLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        85 Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |+|.+    +.....+.|.|
T Consensus        85 Y~C~~----g~~~~~~~L~V  100 (115)
T 2cr6_A           85 IYFEA----GDQRASAALRV  100 (115)
T ss_dssp             EEEEE----TTEECCEEEEE
T ss_pred             EEEEE----CCeeEEEEEEE
Confidence            99993    44557788888

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=3.8e-11  Score=88.74  Aligned_cols=78  Identities=17%  Similarity=0.250  Sum_probs=63.8

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCccc
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTP   99 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~   99 (365)
                      ....+.+|+.+.|.|.+. .|.+ .+.|+|++.. +..........++....|.|.+++.+|+|.|+|.+.|    ....
T Consensus        21 ~~~~~~~G~~v~L~C~~~-~p~~-~v~W~k~g~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~   93 (113)
T 2cpc_A           21 VYVAAVRLERVVLTCELC-RPWA-EVRWTKDGEE-VVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD----ESAS   93 (113)
T ss_dssp             EEEEEETTCCEEEEEEES-CTTC-CCEEEETTEE-CCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS----CEEE
T ss_pred             eeEEEEcCCeEEEEEEec-CCCC-eEEEEECCEE-CccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec----CcEE
Confidence            446788999999999984 7888 9999999988 7655554444555566899999999999999999987    4467


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      +.|.|
T Consensus        94 ~~l~V   98 (113)
T 2cpc_A           94 FTVTV   98 (113)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88888

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.26  E-value=1.4e-11  Score=90.40  Aligned_cols=86  Identities=8%  Similarity=-0.051  Sum_probs=64.1

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCC---cceEEEEeCCCcCCCC--CCceeEe------cCCeEEEEEEccCCCCCCeEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQ---AQYFTWAFNNSGTAPR--PLTSYSI------QDGSTSVARYTPTSELEYGTLL   86 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~---~~~v~W~~~~~~~l~~--~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~   86 (365)
                      .+....+.+|+.++|.|.+.+.|.   + .++|+|++...+..  .......      .......|.|.+++.+|+|.|+
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   88 (108)
T 3cx2_A           10 RPQDGEVTVGGSITFSARVAGASLLKPP-VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYR   88 (108)
T ss_dssp             CCCCEEEETTCCEEEEEEEECC-CCSCC-EEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEE
T ss_pred             CCCcEEEeCCCCEEEEEEECCCccCCCc-EEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEE
Confidence            455677899999999999888888   8 99999987321111  1111111      1113468999999999999999


Q ss_pred             EEEEeCCCCCcccEEEEE
Q psy3823          87 CWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        87 C~a~~~~~~~~~~~~l~V  104 (365)
                      |.|.|..|.....+.|.|
T Consensus        89 C~a~N~~G~~~~~~~L~V  106 (108)
T 3cx2_A           89 CEVSTKDKFDCSNFNLTV  106 (108)
T ss_dssp             EEEECSSCEEEEEEEEEE
T ss_pred             EEEecCCCceEEEEEEEE
Confidence            999999998888888887

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.26  E-value=1.8e-11  Score=91.44  Aligned_cols=84  Identities=10%  Similarity=-0.016  Sum_probs=63.3

Q ss_pred             eeeecCceEEEEEEEeee---CCCceeEEEeCCCCCCC--CCCceeEe--eC----CCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         234 YGALRNEQVLVSCTVDAN---PQAQYFTWAFNNSDTAP--RPLTSYSI--QD----GSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~---p~~~~~~W~~~~~~~~~--~~~~~~~~--~~----~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      ..+.+|+.++|.|.+.+.   |.|. +.|++++.....  ......+.  .+    ...+.|.|.+++..|+|.|+|.|.
T Consensus        17 v~V~eG~~v~L~C~v~g~~~~p~P~-V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevs   95 (126)
T 2dav_A           17 GTVKVGEDITFIAKVKAEDLLRKPT-IKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT   95 (126)
T ss_dssp             CEEETTCCEEEEEEEECCCSSSCCE-EEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEEeccCCCCCCc-EEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEE
Confidence            338999999999999875   7887 999996421100  01112221  11    124679999999999999999999


Q ss_pred             cCCccceecEEEEEEc
Q psy3823         303 NEQGSQRTPCTFHVVK  318 (365)
Q Consensus       303 n~~g~~~~~~~l~v~~  318 (365)
                      |..|..+..+.|.|..
T Consensus        96 n~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           96 YKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CSSCEEEECCEEEEEC
T ss_pred             eCCCcEEEEEEEEEEe
Confidence            9999999999999987

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.26  E-value=6.2e-11  Score=85.50  Aligned_cols=92  Identities=11%  Similarity=0.163  Sum_probs=71.1

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+.........+..|+.+.|.|.+. .|.+. +.|+++|..... ..+..+..++....|.|.+++.+|+|.|+|.|
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~-v~W~k~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLE-VKWYKNGQEIRP-STKYIFEHKGCQRILFINNCQMTDDSEYYVTA   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSC-EEEEESSCBCCC-BTTEEEEEETTEEEEEEEEECTTTCCEEEEEE
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCce-EEEEECCEECCC-CCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE
Confidence            4566665444434478999999999998 68887 999999875432 34555566677778999999999999999999


Q ss_pred             EcCCccceecEEEEEEcCc
Q psy3823         302 RNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~~~~  320 (365)
                          |..+.++.|.|..++
T Consensus        83 ----g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 ----GDEKCSTELFVRSGP   97 (100)
T ss_dssp             ----TTEEEEEEEEECCSC
T ss_pred             ----CCceEEEEEEEecCC
Confidence                777778888887553

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1.9e-11  Score=88.13  Aligned_cols=80  Identities=9%  Similarity=0.169  Sum_probs=65.4

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      ++..+.+.+|+.++|.|.+.+.| + .+.|+|++.. +........ ...   .|.|.+++.+|.|.|+|.|.|..+...
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p-~i~W~k~g~~-~~~~~~~~~-~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~~   81 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQ-LAESNRTRI-TGE---EVEVQDSVPADSGLYACVTSSPSGSDT   81 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-C-EEEEEESSSB-CCCCSSEEE-CSS---EEEETTCCTTTCEEEEEEEEETTEEEE
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-C-eEEEEECCEE-CCCCCcEEE-ECC---EEEEccCCHHHCEEEEEEEEeCCceEE
Confidence            45677789999999999987776 7 9999999988 655444332 233   899999999999999999999988877


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      ..+.|.|
T Consensus        82 ~~~~l~V   88 (99)
T 2cr3_A           82 TYFSVNV   88 (99)
T ss_dssp             EEEEECB
T ss_pred             EEEEEEE
Confidence            7777777

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.25  E-value=7e-10  Score=97.12  Aligned_cols=148  Identities=12%  Similarity=0.173  Sum_probs=89.3

Q ss_pred             ccceecCCcEEEEEEEEec-------CCCCeeEEEeCCeEEeeCCCCceEEe--eceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         129 ASVLNEGVDIYFDCHIQAN-------PPYKKLIWTHNGITISNNASAGRIIT--NQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~~~~~-------p~~~~i~W~~~~~~l~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      +..+..|++++|.|.+.+.       |.+. |.|++||..+....  .....  .+.|.|.++.+.+ |.|+|.+.+. |
T Consensus        13 ~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~-i~W~~~g~~i~~~~--~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~-g   87 (303)
T 1i1r_A           13 SPVVQLHSNFTAVCVLKEKCMDYFHVNANY-IVWKTNHFTIPKEQ--YTIINRTASSVTFTDIASLN-IQLTCNILTF-G   87 (303)
T ss_dssp             SCEEETTCCEEEEEEECHHHHHHHTCCGGG-EEEEETTEECCGGG--CEEEETTEEEEEECSCCCSE-EEEEEEEEET-T
T ss_pred             CceEeCCCCEEEEEEECCccccccCCChhh-eEEEECCEECChhh--eeeeCCcEEEEEEcCcCCCc-eEEEEecccC-C
Confidence            3468899999999999863       5566 99999999886431  12222  3579999998874 9999999874 3


Q ss_pred             CCC--cccEEEEEeeeeecccccCCCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEe-
Q psy3823         200 EGG--STPFDLNINKMVNLIFNSIDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSI-  276 (365)
Q Consensus       200 ~~~--s~~~~l~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~-  276 (365)
                      ...  ...+.+.+.          .+|              +....|.|...+..... +.|........  ...+.+. 
T Consensus        88 ~~~~~~~~~~l~v~----------~~P--------------~~P~~l~~~~~~~~~v~-l~W~~~~~~~~--~~~Y~v~~  140 (303)
T 1i1r_A           88 QLEQNVYGITIISG----------LPP--------------EKPKNLSCIVNEGKKMR-CEWDGGRETHL--ETNFTLKS  140 (303)
T ss_dssp             TEEEEEEEEEEEEE----------CCC--------------CCCEEEEEEEETTSCCE-EEEECCSCCSS--CCEEEEEE
T ss_pred             CcceEEEEEEEecc----------CCC--------------CCCeeeEEEECCCCcEE-EEccCCCCCCC--CcCEEEEE
Confidence            221  122333343          333              23344566655444444 67765322111  1122110 


Q ss_pred             ------------eCCCEEEEEEcCC-CcccCeEEEEEEEcCCccc
Q psy3823         277 ------------QDGSTSVARYTPT-SELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       277 ------------~~~~~s~l~i~~v-~~~d~G~Y~C~a~n~~g~~  308 (365)
                                  ..+....+.|.++ .....-.|++.|.|..|..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~  185 (303)
T 1i1r_A          141 EWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKV  185 (303)
T ss_dssp             EETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEE
T ss_pred             EecCCCCccCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCc
Confidence                        1112234667777 6666777889999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.25  E-value=1.2e-11  Score=111.19  Aligned_cols=104  Identities=11%  Similarity=0.134  Sum_probs=66.0

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC---ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL---TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      .+..+.+.+|+.+.|.|.+.+ |.+ .++|++++...+....   .... .++   +|.|.+++.+|+|.|+|.|.|..|
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~g-p~p-~i~W~~~~~~~~~~~~~~~r~~~-~~~---~L~I~~v~~~D~G~Y~C~a~N~~g  325 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTKQ-QGM-TKVWVSPSNEQVLSQGSNGSVSV-RNG---DLFFKKVQVEDGGVYTCYAMGETF  325 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCSS-TTC-EEEEECTTSCBCCSCCSSSSEEE-ETT---EEEESSCCTTSCEEEEEEEECSSC
T ss_pred             cccCceecCCCeEEEEeEeeC-CCC-eEEEEeCCCeeEeecccCCceEe-ecC---eEEEeecCcccCEEEEEEEecCCC
Confidence            344567899999999999888 888 9999998765232221   2222 344   799999999999999999999988


Q ss_pred             CCcccEEEEEEeccccCCCCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCC
Q psy3823          95 NQRTPCTFHVVKAGECEHPVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYK  151 (365)
Q Consensus        95 ~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  151 (365)
                      .....+.|.|         ...               ..+|+.++|.|.+.|.|.|.
T Consensus       326 ~~~~~~~l~V---------~~~---------------~~~g~~~~l~C~~~g~P~P~  358 (361)
T 2xot_A          326 NETLSVELKV---------YNF---------------TLHGHHDTLNAAADPWSHPQ  358 (361)
T ss_dssp             EEEEEEEEEE---------ESS---------------CCC-----------------
T ss_pred             ccEEEEEEEE---------Eee---------------eccCCceEEEEEeCCCCCCc
Confidence            8878888888         221               14788999999999998876

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.25  E-value=1.1e-12  Score=98.56  Aligned_cols=98  Identities=14%  Similarity=0.248  Sum_probs=77.3

Q ss_pred             EEeecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC--CceeE--e--cCCeEEEEEEccC
Q psy3823           4 LIFNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP--LTSYS--I--QDGSTSVARYTPT   77 (365)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~--~~~~~--~--~~~~~~~l~i~~~   77 (365)
                      +.+.+.++|.+..  +....+.+|+.+.|.|.+.+.|.+..+.|++++.. +...  .....  .  .++..+.|.|.++
T Consensus         7 ~~l~V~~~P~i~~--~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~L~I~~v   83 (122)
T 2cry_A            7 GTLTVNGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENV-LESGTSGRYTVETISTEEGVISTLTISNI   83 (122)
T ss_dssp             CCCCCCSSCCEEE--ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCE-ECSEEETTEEEEEEEETTEEEEEEECTTC
T ss_pred             EEEEEecCCCccC--CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEE-ccCCCCCCEEEEEecCCCceEEEEEEcCC
Confidence            4567888898766  56677899999999999999999823999999987 6542  22121  1  2333668999999


Q ss_pred             CCCCC-eEEEEEEEeCCCCCcccEEEEE
Q psy3823          78 SELEY-GTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        78 ~~~d~-G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +..|. |.|+|.|.|..|.....+.|.|
T Consensus        84 ~~~D~~G~Y~C~a~N~~G~~~~~~~l~V  111 (122)
T 2cry_A           84 VRADFQTIYNCTAWNSFGSDTEIIRLKE  111 (122)
T ss_dssp             CHHHHHSCEEEEEECSSCEEEEEECCCC
T ss_pred             ChhhCCceEEEEEECCCCeEEEEEEEEE
Confidence            99999 9999999999998888888877

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.25  E-value=2.4e-11  Score=90.61  Aligned_cols=92  Identities=15%  Similarity=0.175  Sum_probs=67.2

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE--eeC--CCEEEEEEcCCCcccCeEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS--IQD--GSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~--~~~--~~~s~l~i~~v~~~d~G~Y  297 (365)
                      ++|.+......    ...+...|.|.+.|.|.|. +.|+++|....... ....  ...  ...+.|.|.+++.+|+|.|
T Consensus         7 ~pP~i~~~~~~----~~~~~~~l~C~~~g~P~p~-i~W~k~g~~l~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   80 (118)
T 1wwc_A            7 YPPRVVSLEEP----ELRLEHCIEFVVRGNPPPT-LHWLHNGQPLRESK-IIHVEYYQEGEISEGCLLFNKPTHYNNGNY   80 (118)
T ss_dssp             CCCCCCCCCCC----CCCCEEEEEEEEECSSCCE-EEEEETTEECCCSS-SEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred             cCCceeccCCC----eeccceEEEEEeeeeCCCe-EEEEECCEECCCCC-ceeEEEeccCccccEEEEECCCChhcCEEE
Confidence            77776544322    1236678899999999998 99999987543322 2222  111  1345799999999999999


Q ss_pred             EEEEEcCCccceecEEEEEEcC
Q psy3823         298 LCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       298 ~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      +|.|.|..|..+.++.|.|...
T Consensus        81 ~C~a~N~~G~~~~~~~l~v~~~  102 (118)
T 1wwc_A           81 TLIAKNPLGTANQTINGHFLKE  102 (118)
T ss_dssp             EEEEEETTEEEEEEEEECCSCC
T ss_pred             EEEEECCCCeEeeEEEEEEccC
Confidence            9999999999998888876544

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.24  E-value=2.5e-11  Score=88.63  Aligned_cols=83  Identities=10%  Similarity=0.009  Sum_probs=64.6

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      ..+....+.+|+.+.|.|.+.+.|.+  +.|++++.. +..........++....|.|.+++.+|+|.|+|.|.|.  ..
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~~~~~~--v~W~k~g~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~   87 (106)
T 2dlt_A           13 QDIADLTVKAAEQAVFKCEVSDEKVT--GKWYKNGVE-VRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY--AL   87 (106)
T ss_dssp             ECCCCEEEESSCCEECCCEESCSSCE--EEEEESSCB-CCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS--CC
T ss_pred             cCCCCeEEeCCCeEEEEEEEcCCCcc--eEEEcCCEE-CcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC--Cc
Confidence            34456778999999999998776654  999999998 66555444445555678999999999999999999987  34


Q ss_pred             cccEEEEE
Q psy3823          97 RTPCTFHV  104 (365)
Q Consensus        97 ~~~~~l~V  104 (365)
                      ...+.|.|
T Consensus        88 ~~~~~l~V   95 (106)
T 2dlt_A           88 SLSAKLNF   95 (106)
T ss_dssp             CCCBCEEE
T ss_pred             eEEEEEEE
Confidence            45666666

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.24  E-value=4.8e-11  Score=85.72  Aligned_cols=86  Identities=19%  Similarity=0.250  Sum_probs=66.2

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      |......+....+.+|+.++|.|.+. +.|.+ .+.|++++.. .....  ....++   .|.|.+++.+|+|.|+|.|.
T Consensus        10 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~k~~~~-~~~~~--~~~~~~---~L~i~~v~~~D~G~Y~C~a~   82 (98)
T 1gl4_B           10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAY-TLVWTRLHNG-KLPSR--AMDFNG---ILTIRNVQPSDAGTYVCTGS   82 (98)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCC-EEEEEEGGGB-CCCTT--EEEETT---EEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEEeCCCCeEEecCCCEEEEEeCCCCCCCc-EEEEEeCCCC-CCCce--eecCCC---EEEEeCCChhhCEEEEEEec
Confidence            33333455777899999999999976 68888 9999998654 32222  222344   79999999999999999999


Q ss_pred             eCCCCCcccEEEEE
Q psy3823          91 NEQGNQRTPCTFHV  104 (365)
Q Consensus        91 ~~~~~~~~~~~l~V  104 (365)
                      |..|.....+.|.|
T Consensus        83 n~~g~~~~~~~l~V   96 (98)
T 1gl4_B           83 NMFAMDQGTATLHV   96 (98)
T ss_dssp             CSSCEEEEEEEEEE
T ss_pred             CCCCccccEEEEEE
Confidence            99888777777776

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=3.9e-11  Score=87.08  Aligned_cols=90  Identities=11%  Similarity=0.186  Sum_probs=68.4

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+|.+...... ..+..|+.+.|.|.+.+ |.+. +.|++++..... ..+..+..++..+.|.|.+++.+|+|.|+|.|
T Consensus         7 ~pp~~~~~~~~-~~v~~G~~v~l~C~~~~-~~~~-v~W~k~g~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (103)
T 2edf_A            7 GPAAIIKPLED-QWVAPGEDVELRCELSR-AGTP-VHWLKDRKAIRK-SQKYDVVCEGTMAMLVIRGASLKDAGEYTCEV   82 (103)
T ss_dssp             CCCCEEECCCC-EEECTTSCEEECCEESS-SSCC-CCEEESSCBCCC-SSSEEEEEETTEEEEEESSCCTTTCSEEEEEC
T ss_pred             CCcEEEecCCc-cEEcCCCCEEEEEEEeC-CCCc-EEEEECCEEccC-CCCEEEEECCCEEEEEECCCCcccCEEEEEEE
Confidence            34555544434 34889999999999987 7777 999999875433 34555566677788999999999999999999


Q ss_pred             EcCCccceecEEEEEEcC
Q psy3823         302 RNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~~~  319 (365)
                      .|    ...++.|.|..+
T Consensus        83 ~n----~~~~~~l~V~~~   96 (103)
T 2edf_A           83 EA----SKSTASLHVEEK   96 (103)
T ss_dssp             SS----CEEEEEEEECCC
T ss_pred             cc----CCcEEEEEEeCC
Confidence            99    356677777644

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=2.2e-11  Score=89.86  Aligned_cols=85  Identities=7%  Similarity=-0.024  Sum_probs=63.7

Q ss_pred             eeeecCceEEEEEEEeee---CCCceeEEEeCCCCCCCCC--CceeEe--eCC----CEEEEEEcCCCcccCeEEEEEEE
Q psy3823         234 YGALRNEQVLVSCTVDAN---PQAQYFTWAFNNSDTAPRP--LTSYSI--QDG----STSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~---p~~~~~~W~~~~~~~~~~~--~~~~~~--~~~----~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      ..+.+|+.++|.|.+.+.   |.|. |.|++++.......  ....+.  ...    ..+.|.|.++...|+|.|+|.|.
T Consensus        22 v~V~eG~~v~L~C~v~g~~~~p~P~-V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevs  100 (118)
T 2edn_A           22 VSVETGKDAVVVAKVNGKELPDKPT-IKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVK  100 (118)
T ss_dssp             CEEETTSCEECCEEEETTTSSSCCC-CEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEE
T ss_pred             eEEeCCCCEEEEEEEeccCCCCCCc-EEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEE
Confidence            448999999999999875   6887 99999642211111  112221  111    24679999999999999999999


Q ss_pred             cCCccceecEEEEEEcC
Q psy3823         303 NEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       303 n~~g~~~~~~~l~v~~~  319 (365)
                      |..|..+..+.|.|..+
T Consensus       101 n~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A          101 AKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             CSSCEEEEEECCEEECC
T ss_pred             EcCCcEEEEEEEEEEcC
Confidence            99999999999988764

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.23  E-value=3.9e-11  Score=84.96  Aligned_cols=76  Identities=12%  Similarity=0.212  Sum_probs=62.8

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+....+.+|+.+.|.|.+.++|.+ .+.|++++.. +....      .   ..|.|.+++.+|+|.|+|.|.|..+...
T Consensus         9 ~p~~~~v~~G~~~~l~C~~~g~p~p-~i~W~~~~~~-~~~~~------~---~~L~i~~v~~~d~G~Y~C~a~n~~g~~~   77 (91)
T 3bfo_A            9 EPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKNELP-LTHET------K---KLYMVPYVDLEHQGTYWCHVYNDRDSQD   77 (91)
T ss_dssp             CCCCEEECTTSCEEEECEEECSSCC-EEEEEETTEE-CTTCC------S---SEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CCCccEecCCCcEEEEEEeccCCCC-EEEEEcCCee-CCcCC------C---CeEEECCCCHHhCEEEEEEEEcCCCCEE
Confidence            3445668999999999998899999 9999999887 54332      1   2799999999999999999999988654


Q ss_pred             -ccEEEEE
Q psy3823          98 -TPCTFHV  104 (365)
Q Consensus        98 -~~~~l~V  104 (365)
                       ..+.|.|
T Consensus        78 s~~~~l~V   85 (91)
T 3bfo_A           78 SKKVEIII   85 (91)
T ss_dssp             CCCEEEEE
T ss_pred             eeeEEEEE
Confidence             6677777

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1e-10  Score=84.80  Aligned_cols=82  Identities=15%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             eCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          16 QSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        16 ~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ...+....+.+|++++|.|.. +.|.+ .++|++++.. +..........++....|.|.+++.+|+|.|+|.    .+.
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~-~~p~~-~v~W~k~~~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~   84 (103)
T 2dku_A           12 TEELTNLQVEEKGTAVFTCKT-EHPAA-TVTWRKGLLE-LRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQ   84 (103)
T ss_dssp             SSCCCCEEEETTSEEEEEEEC-SSCCS-CCEEEESSCB-CCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----CSS
T ss_pred             EecCCcEEEeCCCcEEEEEEe-CCCCC-eEEEEeCCEE-CCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----eCC
Confidence            344566788999999999995 78888 9999999998 7655554444456666899999999999999998    555


Q ss_pred             CcccEEEEE
Q psy3823          96 QRTPCTFHV  104 (365)
Q Consensus        96 ~~~~~~l~V  104 (365)
                      ....+.|.|
T Consensus        85 ~~~~~~l~V   93 (103)
T 2dku_A           85 AQSRAQLLV   93 (103)
T ss_dssp             CBCCEEEEE
T ss_pred             ceEEEEEEE
Confidence            667788888

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.23  E-value=6.3e-11  Score=86.00  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC-ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL-TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      ..+..|+.+.|.|.+.+ |.+. +.|++++........ ++.+..++....|.|.+++.+|+|.|+|.|.|    .+..+
T Consensus        17 ~~v~~G~~v~l~C~~~~-~~~~-v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~   90 (103)
T 1x44_A           17 TTAYCGERVELECEVSE-DDAN-VKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSSA   90 (103)
T ss_dssp             EEEETTEEEEEEEECSS-SSCC-CEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEEE
T ss_pred             EEEECCCCEEEEEEecC-CCCe-EEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----CcEEE
Confidence            34889999999999977 7787 999999875433222 44556666778899999999999999999988    45666


Q ss_pred             EEEEEcC
Q psy3823         313 TFHVVKA  319 (365)
Q Consensus       313 ~l~v~~~  319 (365)
                      .|.|..+
T Consensus        91 ~l~V~~~   97 (103)
T 1x44_A           91 KLSVDLK   97 (103)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            7777654

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=4e-11  Score=87.21  Aligned_cols=76  Identities=13%  Similarity=0.147  Sum_probs=62.0

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEE
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCT  101 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~  101 (365)
                      ..+.+|+.++|.|.+.+.|.+  +.|++++.. +..........++....|.|.+++.+|+|.|+|.+.|.    ...+.
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~--v~W~k~g~~-~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~----~~~~~   92 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP--ATWYKDGQK-VEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGV----SAFFG   92 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC--CEEEETTEE-CCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSC----CCCEE
T ss_pred             EEEeCCCcEEEEEEecCCCCc--cEEeeCCEE-CCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCc----eEEEE
Confidence            678999999999998887776  899999988 66554444444555678999999999999999999875    34677


Q ss_pred             EEE
Q psy3823         102 FHV  104 (365)
Q Consensus       102 l~V  104 (365)
                      |.|
T Consensus        93 l~V   95 (104)
T 2e6p_A           93 VTV   95 (104)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	5e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	8e-06
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	7e-05
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	8e-05
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-04
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	2e-04
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	2e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	6e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	3e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	4e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	7e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	0.001
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	0.002
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	9e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.001
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.001
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	0.001
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	0.001
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	0.002
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.002
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	0.003
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.003

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.6 bits (99), Expect = 5e-06
 Identities = 16/76 (21%), Positives = 25/76 (32%)

Query: 134 EGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS 193
               +   C  +ANPP       +         S  R++    ++   V     G Y C 
Sbjct: 21  AEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCV 80

Query: 194 AINSQGEGGSTPFDLN 209
           A N++G   S    L 
Sbjct: 81  ATNARGTVVSREASLR 96

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 8e-06
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT 176
             V ++  R+ +   +  G D+ F C  ++  P   L+WT        +     +  N  
Sbjct: 2   IMVTVEEQRSQS---VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---RAMDFNGI 55

Query: 177 LVLQSVTRHSGGLYACSAINSQGE 200
           L +++V     G Y C+  N    
Sbjct: 56  LTIRNVQPSDAGTYVCTGSNMFAM 79

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
           V+ +G D+   C +   P    ++W+HN   +S        +T+  LV++ V     G Y
Sbjct: 14  VVKQGQDVTIPCKVTGLPAPN-VVWSHNAKPLSGGR---ATVTDSGLVIKGVKNGDKGYY 69

Query: 191 ACSAINSQGEGGSTPFDLNIN 211
            C A N  G+       + +N
Sbjct: 70  GCRATNEHGD-KYFETLVQVN 89

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 1/91 (1%)

Query: 227 KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARY 286
           ++ ++R++       V   C    NP      W  N  +                     
Sbjct: 8   EKMEKRLHAVPAANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 66

Query: 287 TPTSELEYGTLLCWARNEQGSQRTPCTFHVV 317
                 + G   C   NE GS        VV
Sbjct: 67  ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 6e-05
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII---TNQTLVLQSVTRHSG 187
            +     + F C    NP    + W  NG         G       + +L+++SV     
Sbjct: 16  AVPAANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 74

Query: 188 GLYACSAINSQGE 200
           G Y C   N  G 
Sbjct: 75  GNYTCVVENEYGS 87

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 7e-05
 Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 1/91 (1%)

Query: 15  KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARY 74
           ++ ++R++       V   C    NP      W  N                        
Sbjct: 8   EKMEKRLHAVPAANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 66

Query: 75  TPTSELEYGTLLCWARNEQGNQRTPCTFHVV 105
                 + G   C   NE G+        VV
Sbjct: 67  ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 8e-05
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 6/81 (7%)

Query: 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGL 189
               EG  I   CH   + P  K+ +  NG +   +       ++    +        G 
Sbjct: 10  LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS------RSDPNFSIPQANHSHSGD 63

Query: 190 YACSAINSQGEGGSTPFDLNI 210
           Y C+         S P  + +
Sbjct: 64  YHCTGNIGYTLYSSKPVTITV 84

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 8/71 (11%), Positives = 16/71 (22%), Gaps = 1/71 (1%)

Query: 131 VLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGL 189
            +  G  +     +          +     I  S +           L + +  +   G 
Sbjct: 11  KVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGC 70

Query: 190 YACSAINSQGE 200
           Y     N  G 
Sbjct: 71  YTLLVENKLGS 81

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 6/81 (7%)

Query: 130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGL 189
            V  E   I+  CH   N    K+ +  NG              N    +   T    G 
Sbjct: 12  WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------HHNSDFHIPKATLKDSGS 65

Query: 190 YACSAINSQGEGGSTPFDLNI 210
           Y C  +       S   ++ I
Sbjct: 66  YFCRGLVGSKNVSSETVNITI 86

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 113 PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII 172
           PV +P +Q      +  + + E   +   C          + W  N  ++          
Sbjct: 2   PVTQPFLQ------VTNTTVKELDSVTLTCLSNDIGA--NIQWLFNSQSLQLTERMTLSQ 53

Query: 173 TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLNIN 211
            N  L +  + R   G Y C   N      S    L+I 
Sbjct: 54  NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 92

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 1/92 (1%)

Query: 227 KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARY 286
           ++ ++ I  +  NE  +  C ++ N      TW + +    P      S          +
Sbjct: 5   EREEKIILVSSANEIDVRPCPLNPNEHKGTITW-YKDDSKTPVSTEQASRIHQHKEKLWF 63

Query: 287 TPTSELEYGTLLCWARNEQGSQRTPCTFHVVK 318
            P    + G   C  RN     R   +   V+
Sbjct: 64  VPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE 95

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 6e-04
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 1/92 (1%)

Query: 15  KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARY 74
           ++ ++ I  +  NE  +  C ++ N      TW + +    P      S          +
Sbjct: 5   EREEKIILVSSANEIDVRPCPLNPNEHKGTITW-YKDDSKTPVSTEQASRIHQHKEKLWF 63

Query: 75  TPTSELEYGTLLCWARNEQGNQRTPCTFHVVK 106
            P    + G   C  RN     R   +   V+
Sbjct: 64  VPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 5/86 (5%)

Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITN 174
           +P   +K           EG    F C + A+  P          +  S          +
Sbjct: 1   QPRFIVKP-YGTEV---GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGND 56

Query: 175 QTLVLQSVTRHSGGLYACSAINSQGE 200
             L +  V     G Y   A NS G 
Sbjct: 57  YGLTINRVKGDDKGEYTVRAKNSYGT 82

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 3/83 (3%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITIS---NNASAGRIITNQTLVLQSVTRHSG 187
           +   G      C   +NP      + +         +  +     + + L+ ++      
Sbjct: 14  MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE 73

Query: 188 GLYACSAINSQGEGGSTPFDLNI 210
           G+Y C   N  G+       L +
Sbjct: 74  GVYTCEVDNGVGKPQKHSLKLTV 96

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQT 176
           PS++ K   +  A     G  +  +C    NP  + + W     + ++      + +   
Sbjct: 5   PSIKAKFPADTYA---LTGQMVTLECFAFGNPVPQ-IKWRKLDGSQTSK----WLSSEPL 56

Query: 177 LVLQSVTRHSGGLYACSAINSQGE 200
           L +Q+V     G Y C A N +G 
Sbjct: 57  LHIQNVDFEDEGTYECEAENIKGR 80

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 113 PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII 172
           P   P+ ++  G          G  +   C          + W        ++ S     
Sbjct: 3   PRRCPAQEVARGV----LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS-RWAG 57

Query: 173 TNQTLVLQSVTRHSGGLYACSAINSQG 199
             + L+L+SV  H  G Y+C       
Sbjct: 58  MGRRLLLRSVQLHDSGNYSCYRAGRPA 84

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 11/69 (15%), Positives = 22/69 (31%)

Query: 132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYA 191
             EG D    C + ++ P   +        I        +++N  L ++ + +   G Y 
Sbjct: 13  FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYR 72

Query: 192 CSAINSQGE 200
           C        
Sbjct: 73  CEGRILARG 81

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (83), Expect = 7e-04
 Identities = 12/77 (15%), Positives = 20/77 (25%)

Query: 240 EQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC 299
           + V + C  D  P+                      I    +S        + +    +C
Sbjct: 21  QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 80

Query: 300 WARNEQGSQRTPCTFHV 316
            A N+ G Q       V
Sbjct: 81  IAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 117 PSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT--- 173
           P+VQ +    +NA+  N G  +   C     P    + WT +G  I N            
Sbjct: 4   PTVQARQ-SIVNATA-NLGQSVTLVCDADGFPEPT-MSWTKDGEPIENEEEDDEKHIFSD 60

Query: 174 -NQTLVLQSVTRHSGGLYACSAINSQGE 200
            +  L +++V ++    Y C A N  GE
Sbjct: 61  DSSELTIRNVDKNDEAEYVCIAENKAGE 88

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 12/77 (15%), Positives = 20/77 (25%)

Query: 28  EQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLC 87
           + V + C  D  P+                      I    +S        + +    +C
Sbjct: 21  QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 80

Query: 88  WARNEQGNQRTPCTFHV 104
            A N+ G Q       V
Sbjct: 81  IAENKAGEQDASIHLKV 97

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 9e-04
 Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 3/83 (3%)

Query: 131 VLNEGVDIYFDCHIQANPP---YKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSG 187
            +++G  +  +C ++                                  L L+SV R   
Sbjct: 7   TVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDA 66

Query: 188 GLYACSAINSQGEGGSTPFDLNI 210
           G Y C   +      S P  L +
Sbjct: 67  GRYWCQVEDGGETEISQPVWLTV 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 133 NEGVDIYFDCHIQANP-PYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYA 191
            EG    F C     P P    +     ++ S            T  + SV     G Y+
Sbjct: 12  YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYS 71

Query: 192 CSAINSQGEGGSTPFDLNINK 212
               NS+G+     F L I K
Sbjct: 72  VVVENSEGK-QEAEFTLTIQK 91

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 7/80 (8%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLY 190
            +         C     P    ++W      I               VL         ++
Sbjct: 12  AVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSVLNVTGVTQSTMF 64

Query: 191 ACSAINSQGEGGSTPFDLNI 210
           +C A N +G   S    +++
Sbjct: 65  SCEAHNLKGLASSRTATVHL 84

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 17/99 (17%)

Query: 116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII--- 172
           +P +Q  L  N +      G D+ F C + ++         H     S     G      
Sbjct: 4   RPILQAGLPANAST---VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV 60

Query: 173 -----------TNQTLVLQSVTRHSGGLYACSAINSQGE 200
                        + L +++VT    G Y C A NS G 
Sbjct: 61  LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI 99

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGG 188
           A V+ EG  ++  CH   N    K+I+  +G  +           N  + + + T    G
Sbjct: 9   AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------YENHNISITNATVEDSG 62

Query: 189 LYACSAINSQGEGGSTPFDLNIN 211
            Y C+    Q +  S P ++ + 
Sbjct: 63  TYYCTGKVWQLDYESEPLNITVI 85

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 4/82 (4%)

Query: 133 NEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQ----TLVLQSVTRHSGG 188
           N G    F C           +W              ++ +++    +  + + T+   G
Sbjct: 14  NAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAG 73

Query: 189 LYACSAINSQGEGGSTPFDLNI 210
            Y C      G G S   +L +
Sbjct: 74  KYRCMIRTEGGVGISNYAELVV 95

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 3/76 (3%)

Query: 125 RNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTR 184
             +  +  + G D+ + C     P              S N      ++   L    +  
Sbjct: 6   DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN---RIEVSGGELRFSKLVL 62

Query: 185 HSGGLYACSAINSQGE 200
              G+Y C A N  G 
Sbjct: 63  EDSGMYQCVAENKHGT 78

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 16/95 (16%)

Query: 132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISN----------NASAGRIITNQTLVLQS 181
           +  G      C      P  +  W  +GI++            N+S      +  L+   
Sbjct: 14  VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 73

Query: 182 VTRHSGGLYACSAINSQGEGGSTP------FDLNI 210
           VT    G Y C A N  G    +        +LN+
Sbjct: 74  VTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNV 108

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITN-QTLVLQSVTRHSGGL 189
           +  E      +C I+ N    K  W  +G + +       +  +  +LV         G 
Sbjct: 13  LFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGH 72

Query: 190 YACSAINSQGEGGSTPFDL 208
           Y C A    G   S     
Sbjct: 73  YQCFAETPAGVASSRVISF 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.59
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.57
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.56
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.55
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.55
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.53
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.53
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.53
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.52
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.52
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.51
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.5
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.5
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.5
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.49
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.48
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.48
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.47
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.47
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.47
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.47
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.46
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.45
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.45
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.44
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.44
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.43
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.43
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.43
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.43
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.42
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.42
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.42
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.42
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.41
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.41
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.41
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.4
d2avga1	110	Cardiac myosin binding protein C, different domain	99.4
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.39
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.39
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.39
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.38
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.37
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.37
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.37
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.37
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.36
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.36
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.36
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.35
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.35
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.35
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.35
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.34
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.34
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.34
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.33
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.33
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.33
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.33
d2avga1	110	Cardiac myosin binding protein C, different domain	99.32
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.31
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.31
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.31
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.31
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.31
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.31
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.3
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.3
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.29
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.29
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.29
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.28
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.27
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.27
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.27
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.27
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.26
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.26
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.26
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.26
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.26
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.25
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.25
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.23
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.22
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.22
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.22
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.21
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.21
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.21
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.21
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.2
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.2
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.2
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.2
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.19
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.17
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.17
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.17
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.15
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.15
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.13
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.13
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.13
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.12
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.11
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.1
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.09
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.97
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.94
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.93
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.92
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.8
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.77
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.69
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.69
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.68
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.64
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.62
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.54
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.54
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.52
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.5
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.49
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.46
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.43
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.43
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.42
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.41
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.41
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.4
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.4
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.39
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.36
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.36
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.36
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.35
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.35
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.35
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.34
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.33
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.32
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.31
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.31
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.31
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.3
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.3
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.3
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.29
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.29
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.29
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.29
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.28
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.28
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.27
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.26
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.26
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.26
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.26
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.25
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.25
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.25
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.24
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.24
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.22
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.22
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.22
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.22
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.21
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.21
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.19
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.18
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.17
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.17
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.16
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.15
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.15
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.15
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.15
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.15
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.14
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.14
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.14
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.14
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.13
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.13
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.12
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.11
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.11
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.1
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.1
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.08
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.08
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.07
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.07
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.07
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.06
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.06
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.06
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.05
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.05
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.05
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.04
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.04
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.03
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.03
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.03
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.03
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.03
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.02
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.02
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.02
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.01
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.01
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.01
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.01
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.01
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.0
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.99
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.99
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.99
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.99
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.99
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.98
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.98
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.98
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.97
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.97
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.97
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.97
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.95
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.95
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.95
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.95
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.95
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.95
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.94
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.94
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.94
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.93
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.93
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.92
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.92
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.92
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.91
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.91
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.91
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.91
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.91
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.9
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.9
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.89
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.89
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.88
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.88
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.88
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.88
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.88
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.87
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.87
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.86
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.86
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.86
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.85
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.85
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.85
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.85
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.84
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.84
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.84
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.83
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.83
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.82
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.82
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.81
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.81
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.81
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.81
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.8
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.78
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.78
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.78
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.77
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.77
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.77
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.77
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.76
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.76
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.76
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.75
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.75
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.75
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.74
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.74
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.73
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.72
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.71
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.71
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.71
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.7
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.7
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.69
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.68
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.68
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.68
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.66
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.65
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.65
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.65
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.65
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.64
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.64
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.62
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.62
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.6
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.6
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.59
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.59
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.58
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.58
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.58
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.56
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.56
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.55
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.54
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.54
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.53
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.53
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.52
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.52
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.51
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.5
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.49
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.48
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.48
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.47
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.47
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.46
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.44
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.44
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.44
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.43
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.42
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.42
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.42
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.41
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.4
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.39
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.39
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.37
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.36
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.35
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.34
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.34
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.33
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.31
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.31
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.29
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.26
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.26
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.2
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.2
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.19
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.19
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.18
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.18
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.18
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.17
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.15
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.15
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.14
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.14
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.14
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.13
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.13
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.09
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.08
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.08
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.05
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.05
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.05
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.05
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.05
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.05
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.05
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.03
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.02
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.02
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.0
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.99
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.99
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.98
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.97
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.97
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.96
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.95
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.93
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.9
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.89
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.89
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.87
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	96.86
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.86
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.85
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.85
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.84
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.82
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.82
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.82
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.81
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.81
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.8
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.79
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.79
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.78
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.78
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.77
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.75
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	96.75
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.75
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.73
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.73
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.73
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.72
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.71
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.71
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.71
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.71
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.7
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.7
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.7
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.69
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.69
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	96.68
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.68
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.66
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.66
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.66
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.65
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.65
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.65
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.65
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.64
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.64
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.64
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.63
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.63
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	96.63
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.63
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.61
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.61
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.61
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.6
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.6
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.6
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.59
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.59
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.59
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.58
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.57
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.57
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.57
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.55
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.55
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.55
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.54
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.54
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.54
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.53
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.53
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.51
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.49
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.49
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.48
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.47
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.47
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.45
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	96.45
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.44
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.44
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.44
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.43
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.43
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.42
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.42
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.42
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.41
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.41
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	96.38
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.38
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.38
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.38

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.59  E-value=6.3e-15  Score=104.58  Aligned_cols=94  Identities=11%  Similarity=0.080  Sum_probs=75.3

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +|.+...... ..+.+|+.+.|.|.+.|.|.|. +.|++++...............+..+.|.|.++..+|+|.|+|.|.
T Consensus         4 aP~f~~~~~~-~~v~~g~~v~l~c~v~g~P~p~-v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   81 (98)
T d1g1ca_           4 APKIFERIQS-QTVGQGSDAHFRVRVVGKPDPE-CEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   81 (98)
T ss_dssp             EEEEEECCCC-EEEETTSCEEEEEEEEEESCCE-EEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEecCCCc-EEEcCCCcEEEEEEEEEecCCe-EEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence            4555544433 3388999999999999999998 9999998755443333333445567789999999999999999999


Q ss_pred             cCCccceecEEEEEEc
Q psy3823         303 NEQGSQRTPCTFHVVK  318 (365)
Q Consensus       303 n~~g~~~~~~~l~v~~  318 (365)
                      |..|..+..+.|.|+.
T Consensus        82 N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          82 NIAGETSSHAFLLVQA   97 (98)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCcEEEEEEEEEEEE
Confidence            9999999999998875

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.57  E-value=8.2e-15  Score=102.88  Aligned_cols=92  Identities=14%  Similarity=0.134  Sum_probs=74.7

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +|.+..+... ..+..|+.+.|.|.+.|.|.|. +.|++++..... .........+..+.|.|.+++.+|+|.|+|.|.
T Consensus         2 ~P~i~~~~~~-~~v~~G~~~~l~c~~~g~P~p~-v~W~~~~~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   78 (93)
T d1wiua_           2 KPKILTASRK-IKIKAGFTHNLEVDFIGAPDPT-ATWTVGDSGAAL-APELLVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCE-EEECSSBCCEEEEEEECCSSCE-EEEECSSSSCBC-STTSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEeCCCc-EEEeCCCeEEEEEEEEEecCCe-EEEEeeeeecee-eeeeeecccccceeeccccccccccEEEEEEEE
Confidence            4666554444 4489999999999999999998 999999875433 334445556667789999999999999999999


Q ss_pred             cCCccceecEEEEEE
Q psy3823         303 NEQGSQRTPCTFHVV  317 (365)
Q Consensus       303 n~~g~~~~~~~l~v~  317 (365)
                      |..|..+..+.|.|+
T Consensus        79 N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          79 NELGEDEAIFEVIVQ   93 (93)
T ss_dssp             ETTEEEEEEEEEEEC
T ss_pred             ECCCEEEEEEEEEEC
Confidence            999999988888774

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.56  E-value=6.2e-15  Score=104.40  Aligned_cols=94  Identities=13%  Similarity=0.146  Sum_probs=75.7

Q ss_pred             CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      |.+...+.... +.+|+.+.|.|.+.|.|.|. +.|+++|.... ...+..+..++..+.|.|.++..+|+|.|+|.|.|
T Consensus         2 P~f~~~p~~~~-v~~G~~~~l~C~~~g~P~p~-v~W~~~~~~l~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   78 (97)
T d1koaa1           2 PRFIVKPYGTE-VGEGQSANFYCRVIASSPPV-VTWHKDDRELK-QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN   78 (97)
T ss_dssp             CEEEECCCCCE-EETTSCEEEEEEEECSSCCE-EEEEETTEECC-SBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEE
T ss_pred             CEEEEeCCCEE-EeCCCcEEEEEEEEEcCCCE-EEEEEeeeccc-eeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEE
Confidence            45554443333 88999999999999999998 99999987543 33344455567778899999999999999999999


Q ss_pred             CCccceecEEEEEEcCc
Q psy3823         304 EQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       304 ~~g~~~~~~~l~v~~~~  320 (365)
                      ..|..+..+.|.|...+
T Consensus        79 ~~G~~~~~~~l~V~~~~   95 (97)
T d1koaa1          79 SYGTKEEIVFLNVTRHS   95 (97)
T ss_dssp             TTEEEEEEECCEEECSC
T ss_pred             CCCEEEEEEEEEEeecC
Confidence            99999999999887543

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.1e-14  Score=101.48  Aligned_cols=83  Identities=14%  Similarity=0.105  Sum_probs=71.9

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      .+..|+.+.|.|.+.|.|.+. +.|+++|... ....+..+......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus        11 ~v~~G~~~~l~C~v~g~p~p~-v~W~k~~~~l-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   88 (101)
T d2cqva1          11 KVRAGESVELFGKVTGTQPIT-CTWMKFRKQI-QESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL   88 (101)
T ss_dssp             EEETTCCEEEEEEEESSSSCE-EEEEESSSBC-CCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEE
T ss_pred             EEeCCCcEEEEEEEEecCCCE-EEEEeCceee-ccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            388999999999999999998 9999998754 34455556666677889999999999999999999999999999999


Q ss_pred             EEEcC
Q psy3823         315 HVVKA  319 (365)
Q Consensus       315 ~v~~~  319 (365)
                      .|...
T Consensus        89 ~V~~~   93 (101)
T d2cqva1          89 TVVDK   93 (101)
T ss_dssp             EEECS
T ss_pred             EEEec
Confidence            99754

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=6.8e-15  Score=102.79  Aligned_cols=88  Identities=17%  Similarity=0.167  Sum_probs=72.8

Q ss_pred             ccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823           9 TDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus         9 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      +|+|.+....+....+.+|+.++|.|.+.++|.+ .++|++++.. ......   ..++   .|.|.+++.+|+|.|+|.
T Consensus         2 ~~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~~~~-~~~~~~---~~~~---~L~I~~v~~~D~G~Y~C~   73 (91)
T d1cs6a3           2 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVP-QIKWRKLDGS-QTSKWL---SSEP---LLHIQNVDFEDEGTYECE   73 (91)
T ss_dssp             CEEEEEEECCCSEEEEETTCCEEEECEEEEESCC-EEEEEECCSC-CSCCCS---BSSS---EEEECSCCGGGCEEEEEE
T ss_pred             ccCCeEEeeCCCcEEEecCCcEEEEEEEEEccCC-EEEEEecccc-cceEee---eeee---EEEeCCCCccCCEEEEEE
Confidence            5788877766778889999999999998899999 9999998765 332211   1333   799999999999999999


Q ss_pred             EEeCCCCCcccEEEEE
Q psy3823          89 ARNEQGNQRTPCTFHV  104 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V  104 (365)
                      |.|..|.....+.|.|
T Consensus        74 a~N~~G~~~~~~~l~V   89 (91)
T d1cs6a3          74 AENIKGRDTYQGRIII   89 (91)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEE
Confidence            9999998877888877

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.55  E-value=2.3e-14  Score=102.40  Aligned_cols=94  Identities=11%  Similarity=0.174  Sum_probs=74.4

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      .+|.+...+.. ..+..|+.+.|.|.+.|.|.|. +.|+++|..... .....+ ......+.|.|.+++.+|.|.|+|.
T Consensus         7 ~~P~f~~~~~~-~~v~~G~~~~l~C~~~g~P~p~-v~W~k~~~~i~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   83 (102)
T d1fhga_           7 VKPYFTKTILD-MEVVEGSAARFDCKVEGYPDPE-VMWFKDDNPVKE-SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK   83 (102)
T ss_dssp             EEEEEEECCCC-EEEETTSCEEEEEEEEEESCCE-EEEEETTEECCC-SSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEcCCCc-EEEecCCcEEEEEEEEeccCCe-EEEEeeeccccc-eeeEeEEEecCceeeeEecCCCHHhCEEEEEE
Confidence            34555544444 3488999999999999999998 999999875443 334443 3344567899999999999999999


Q ss_pred             EEcCCccceecEEEEEEc
Q psy3823         301 ARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       301 a~n~~g~~~~~~~l~v~~  318 (365)
                      |.|..|..+.++.|.|+.
T Consensus        84 a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          84 AVNSLGEATCTAELLVET  101 (102)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCcEEEEEEEEEEEE
Confidence            999999999999998863

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.1e-14  Score=101.53  Aligned_cols=85  Identities=13%  Similarity=0.061  Sum_probs=73.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      +....+.+|+.+.|.|.+.+.|.+ .++|++++.. +..............++|.|.+++.+|+|.|+|.|.|..|....
T Consensus         7 p~~~~v~~G~~~~l~C~v~g~p~p-~v~W~k~~~~-l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   84 (101)
T d2cqva1           7 PEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQ-IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA   84 (101)
T ss_dssp             CCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSB-CCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEEC
T ss_pred             CCcEEEeCCCcEEEEEEEEecCCC-EEEEEeCcee-eccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEE
Confidence            455678999999999998899999 9999999998 77666655545555678999999999999999999999999989


Q ss_pred             cEEEEEE
Q psy3823          99 PCTFHVV  105 (365)
Q Consensus        99 ~~~l~V~  105 (365)
                      .+.|.|.
T Consensus        85 ~~~l~V~   91 (101)
T d2cqva1          85 QVNLTVV   91 (101)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            9999993

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.53  E-value=9e-15  Score=102.20  Aligned_cols=85  Identities=16%  Similarity=0.226  Sum_probs=72.6

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      ++..+.+.+|+++.|.|.+.+.|.+ .+.|++++.. +................|.|.+++.+|+|.|+|.|.|..|...
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~g~~-l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   82 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPVP-TVTWLRKGQV-LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQE   82 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSCC-CCEEESSSST-TCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCC
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeCC-eEEEEEeecc-cccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEE
Confidence            3456778999999999999999999 9999999998 7665554444555567899999999999999999999999988


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      ..+.|.|
T Consensus        83 ~~~~l~V   89 (91)
T d1tnna_          83 AEFTLTI   89 (91)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            8888877

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.53  E-value=1.7e-14  Score=101.18  Aligned_cols=91  Identities=16%  Similarity=0.149  Sum_probs=75.3

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      +|.+.. ....+.+.+|+++.|.|.+.++|.+ .+.|++++.. +...............+|.|.+++.+|+|.|+|.|.
T Consensus         2 ~P~i~~-~~~~~~v~~G~~~~l~c~~~g~P~p-~v~W~~~~~~-i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   78 (93)
T d1wiua_           2 KPKILT-ASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSG-AALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECC-CCCEEEECSSBCCEEEEEEECCSSC-EEEEECSSSS-CBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEe-CCCcEEEeCCCeEEEEEEEEEecCC-eEEEEeeeee-ceeeeeeeecccccceeeccccccccccEEEEEEEE
Confidence            354543 3456789999999999998899999 9999999998 766555444455556689999999999999999999


Q ss_pred             eCCCCCcccEEEEE
Q psy3823          91 NEQGNQRTPCTFHV  104 (365)
Q Consensus        91 ~~~~~~~~~~~l~V  104 (365)
                      |..|.....+.|.|
T Consensus        79 N~~G~~~~~~~l~V   92 (93)
T d1wiua_          79 NELGEDEAIFEVIV   92 (93)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            99999888888877

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=2.2e-14  Score=100.13  Aligned_cols=88  Identities=18%  Similarity=0.197  Sum_probs=68.2

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      ++|.+....+....+.+|+.+.|.|.+.|.|.|. +.|++++.......     ..+  ...|.|.+++.+|+|.|+|.|
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~-i~W~k~~~~~~~~~-----~~~--~~~L~I~~v~~~D~G~Y~C~a   74 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ-IKWRKLDGSQTSKW-----LSS--EPLLHIQNVDFEDEGTYECEA   74 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCE-EEEEECCSCCSCCC-----SBS--SSEEEECSCCGGGCEEEEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCE-EEEEecccccceEe-----eee--eeEEEeCCCCccCCEEEEEEE
Confidence            4566654433444488999999999999999998 99999765332211     111  235999999999999999999


Q ss_pred             EcCCccceecEEEEEE
Q psy3823         302 RNEQGSQRTPCTFHVV  317 (365)
Q Consensus       302 ~n~~g~~~~~~~l~v~  317 (365)
                      .|..|..+..+.|.|.
T Consensus        75 ~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          75 ENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEEE
Confidence            9999999888888875

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1e-14  Score=103.07  Aligned_cols=91  Identities=20%  Similarity=0.342  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEE
Q psy3823         113 PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       113 ~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  192 (365)
                      |..+|.+.+      .+..+.+|++++|.|.+.+ +++. +.|+++|..+.............+|.|.+++.+|+|.|+|
T Consensus         2 Pv~~P~i~~------~~~~v~~g~~v~l~C~~~~-~~~~-v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C   73 (96)
T d1l6za2           2 PVTQPFLQV------TNTTVKELDSVTLTCLSND-IGAN-IQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC   73 (96)
T ss_dssp             CCCCCCEEC------SCSEECTTSCEEEEECCCC-SSCE-EEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEE
T ss_pred             CCCCCeEEc------CceEEeCCCeEEEEEccCC-CCCC-EEEEEeeeecccccceeccCCceEEEEeccchhhceEEEE
Confidence            345676543      4457889999999998866 4444 9999999998765444334446789999999999999999


Q ss_pred             EEEcCCCCCCcccEEEEEe
Q psy3823         193 SAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       193 ~~~~~~~~~~s~~~~l~v~  211 (365)
                      .|.|..|...+..+.|+|.
T Consensus        74 ~a~N~~g~~~S~~~~L~V~   92 (96)
T d1l6za2          74 EISNPVSVRRSNSIKLDII   92 (96)
T ss_dssp             EEESSSCCEECCCCEEEEC
T ss_pred             EEEeCCCCeEEEeEEEEEE
Confidence            9999999877778899998

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.52  E-value=1.2e-14  Score=101.04  Aligned_cols=87  Identities=18%  Similarity=0.279  Sum_probs=71.5

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      +|.+....+..+.+.+|+++.|.|.+.+.|.+ .++|++++.. +..... .. .+.   .|.|.+++.+|+|.|+|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~~-i~~~~~-~~-~~~---~L~i~~v~~~d~G~Y~C~a~   74 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKP-LSGGRA-TV-TDS---GLVIKGVKNGDKGYYGCRAT   74 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCC-CCEEEETTEE-CCSSSE-EE-ETT---EEEESSCCSTTCEEEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCC-EEEEEeCCcc-CccccE-EE-eee---eEEECCCChhhCEEEEEEEE
Confidence            46666655566778999999999998899999 9999999998 765433 22 233   59999999999999999999


Q ss_pred             eCCCCCcccEEEEE
Q psy3823          91 NEQGNQRTPCTFHV  104 (365)
Q Consensus        91 ~~~~~~~~~~~l~V  104 (365)
                      |..|.....+.|.|
T Consensus        75 N~~G~~~~~~~l~V   88 (89)
T d1biha4          75 NEHGDKYFETLVQV   88 (89)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            99998877777776

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.51  E-value=1.2e-14  Score=102.95  Aligned_cols=84  Identities=13%  Similarity=0.120  Sum_probs=71.8

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      +....+.+|+.+.|.|.+.+.|.+ .++|++++.. +...........+....|.|.+++.+|+|.|+|.|.|..|....
T Consensus         8 p~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~~-l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   85 (97)
T d1koaa1           8 PYGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRE-LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEE   85 (97)
T ss_dssp             CCCCEEETTSCEEEEEEEECSSCC-EEEEEETTEE-CCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEEEEcCCC-EEEEEEeeec-cceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEE
Confidence            445678999999999998899999 9999999998 76655544445566678999999999999999999999998888


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      .+.|+|
T Consensus        86 ~~~l~V   91 (97)
T d1koaa1          86 IVFLNV   91 (97)
T ss_dssp             EECCEE
T ss_pred             EEEEEE
Confidence            888888

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.50  E-value=4e-14  Score=98.26  Aligned_cols=86  Identities=19%  Similarity=0.283  Sum_probs=67.3

Q ss_pred             CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      |.+...+.....+.+|+.+.|.|.+.|.|.|. +.|+++|....  ..+.... ++   .|.|.+++.+|+|.|+|.|.|
T Consensus         3 P~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~-v~W~~~~~~i~--~~~~~~~-~~---~L~i~~v~~~d~G~Y~C~a~N   75 (89)
T d1biha4           3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN-VVWSHNAKPLS--GGRATVT-DS---GLVIKGVKNGDKGYYGCRATN   75 (89)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEEEEESCCC-CEEEETTEECC--SSSEEEE-TT---EEEESSCCSTTCEEEEEEEEE
T ss_pred             CeEEECCCCCEEEeCCCeEEEEEEEEEeCCCE-EEEEeCCccCc--cccEEEe-ee---eEEECCCChhhCEEEEEEEEE
Confidence            44544443444488999999999999999998 99999887542  2233322 22   399999999999999999999


Q ss_pred             CCccceecEEEEE
Q psy3823         304 EQGSQRTPCTFHV  316 (365)
Q Consensus       304 ~~g~~~~~~~l~v  316 (365)
                      ..|..+..+.|.|
T Consensus        76 ~~G~~~~~~~l~V   88 (89)
T d1biha4          76 EHGDKYFETLVQV   88 (89)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9999988888876

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.50  E-value=3e-14  Score=100.97  Aligned_cols=92  Identities=12%  Similarity=0.100  Sum_probs=74.7

Q ss_pred             cCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCcee-EecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          10 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSY-SIQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        10 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      .+|.+... .....+.+|+.+.|.|.+.++|.+ .++|++++.. +....... ........+|.|.+++.+|.|.|+|.
T Consensus         3 eaP~f~~~-~~~~~v~~g~~v~l~c~v~g~P~p-~v~W~k~~~~-i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~   79 (98)
T d1g1ca_           3 EAPKIFER-IQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVK-IERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK   79 (98)
T ss_dssp             EEEEEEEC-CCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEE-CCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             cCCeEecC-CCcEEEcCCCcEEEEEEEEEecCC-eEEEEeCceE-EeeeeeeEEEeccceEEEEEeccCccccCEEEEEE
Confidence            35666544 345678999999999998899999 9999999998 76554433 33334556899999999999999999


Q ss_pred             EEeCCCCCcccEEEEE
Q psy3823          89 ARNEQGNQRTPCTFHV  104 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V  104 (365)
                      |.|..|.....+.|.|
T Consensus        80 a~N~~G~~~~~~~L~V   95 (98)
T d1g1ca_          80 AINIAGETSSHAFLLV   95 (98)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCcEEEEEEEEEE
Confidence            9999999888888888

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.50  E-value=3e-14  Score=99.50  Aligned_cols=81  Identities=16%  Similarity=0.221  Sum_probs=69.2

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      .+.+|+.+.|.|.+.|.|.|. +.|+++|... ..............+.|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus        10 ~v~~G~~~~l~C~~~g~P~p~-v~W~~~g~~l-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   87 (91)
T d1tnna_          10 TVYEGESARFSCDTDGEPVPT-VTWLRKGQVL-STSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL   87 (91)
T ss_dssp             ECSSSSCCCEEEECCCSSCCC-CEEESSSSTT-CSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEE
T ss_pred             EEeCCCcEEEEEEEEEEeCCe-EEEEEeeccc-ccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEE
Confidence            388999999999999999998 9999998744 33444555566677889999999999999999999999999888888


Q ss_pred             EEE
Q psy3823         315 HVV  317 (365)
Q Consensus       315 ~v~  317 (365)
                      .|.
T Consensus        88 ~V~   90 (91)
T d1tnna_          88 TIQ   90 (91)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            764

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.49  E-value=7.5e-14  Score=96.79  Aligned_cols=87  Identities=17%  Similarity=0.236  Sum_probs=68.0

Q ss_pred             CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      |.+...+... .+..|+.+.|.|.+.|.|.|. +.|+++|..... .....+ .++   .|.|.++..+|+|.|+|.|.|
T Consensus         2 P~f~~~~~~~-~v~~G~~~~l~C~~~g~P~p~-v~W~k~g~~i~~-~~~~~~-~~~---~L~i~~v~~~D~G~Y~C~a~N   74 (89)
T d1cs6a4           2 PDWLDVITDT-EADIGSDLRWSCVASGKPRPA-VRWLRDGQPLAS-QNRIEV-SGG---ELRFSKLVLEDSGMYQCVAEN   74 (89)
T ss_dssp             EEEEECCCCE-EEETTCCEEEECEEEEESCCE-EEEEETTEECCC-CSSEEE-ETT---EEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEECCCE-EECCCCcEEEEEEEEEEcCCE-EEEEEeeccccc-cceeee-eee---eEEEEeecccCCEEEEEEEEe
Confidence            3444434333 388999999999999999998 999999875432 233332 222   499999999999999999999


Q ss_pred             CCccceecEEEEEE
Q psy3823         304 EQGSQRTPCTFHVV  317 (365)
Q Consensus       304 ~~g~~~~~~~l~v~  317 (365)
                      ..|..+.++.|.|+
T Consensus        75 ~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          75 KHGTVYASAELTVQ   88 (89)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99999988888886

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=7.3e-14  Score=99.36  Aligned_cols=95  Identities=17%  Similarity=0.249  Sum_probs=70.1

Q ss_pred             CCceecCc-cceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCc-eeEeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         223 EPVCKQSQ-QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLT-SYSIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       223 ~p~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      +|.+.... .....+..|+.+.|.|.+.|.|.|. +.|+++|......... .........+.|.|.+++.+|+|.|+|.
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~-i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPT-MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCE-EEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCE-EEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            45554333 2223367899999999999999998 9999998754332221 1122233345799999999999999999


Q ss_pred             EEcCCccceecEEEEEEc
Q psy3823         301 ARNEQGSQRTPCTFHVVK  318 (365)
Q Consensus       301 a~n~~g~~~~~~~l~v~~  318 (365)
                      |.|..|..+..+.|.|..
T Consensus        82 a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          82 AENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEE
Confidence            999999999999988864

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.48  E-value=9.6e-15  Score=103.34  Aligned_cols=84  Identities=15%  Similarity=0.190  Sum_probs=67.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      ...+.+.+|+++.|.|.+.++|.+ .+.|++|+.. +...... .........+|.|.+++.+|+|.|+|.|.|..|...
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~P~p-~i~W~kng~~-l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (97)
T d3dara1          12 KRLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKE-FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN   89 (97)
T ss_dssp             CCEEEECTTCCEEEECCEEEESCC-EEEEEETTEE-CCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cccEEECCCCcEEEEEEEeEECCC-EEEEEECCEe-ccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEE
Confidence            456778999999999998899999 9999999988 6433221 111111223899999999999999999999999888


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      .++.|+|
T Consensus        90 ~~~~l~V   96 (97)
T d3dara1          90 HTYHLDV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888887

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.47  E-value=8.5e-14  Score=99.37  Aligned_cols=91  Identities=11%  Similarity=0.163  Sum_probs=74.2

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeE-ecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      +|.+.. .+....+.+|+.+.|.|.+.+.|.+ .++|++++.. +........ .......+|.|.+++.+|.|.|+|.|
T Consensus         8 ~P~f~~-~~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~~~~-i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (102)
T d1fhga_           8 KPYFTK-TILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNP-VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA   84 (102)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEE-CCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEc-CCCcEEEecCCcEEEEEEEEeccCC-eEEEEeeecc-ccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEE
Confidence            354433 3445678999999999998889999 9999999998 766655443 33445668999999999999999999


Q ss_pred             EeCCCCCcccEEEEE
Q psy3823          90 RNEQGNQRTPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V  104 (365)
                      .|..|....++.|.|
T Consensus        85 ~N~~G~~~~~~~L~V   99 (102)
T d1fhga_          85 VNSLGEATCTAELLV   99 (102)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCcEEEEEEEEEE
Confidence            999998888888887

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.47  E-value=3.2e-14  Score=100.60  Aligned_cols=83  Identities=17%  Similarity=0.197  Sum_probs=65.5

Q ss_pred             eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      ..+..|+.+.|.|.+.|.|.|. +.|+++|..................+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~-i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   93 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPT-MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   93 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCE-EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCE-EEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            3478899999999999999998 999999875543222222222223346999999999999999999999999999888


Q ss_pred             EEEE
Q psy3823         314 FHVV  317 (365)
Q Consensus       314 l~v~  317 (365)
                      |.|.
T Consensus        94 l~Vl   97 (97)
T d3dara1          94 LDVV   97 (97)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8873

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.47  E-value=7.7e-14  Score=96.73  Aligned_cols=80  Identities=18%  Similarity=0.402  Sum_probs=67.8

Q ss_pred             CccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEE
Q psy3823         128 NASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFD  207 (365)
Q Consensus       128 ~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~  207 (365)
                      .+..+.+|+++.|.|.+.|.|.|. +.|++||.++....  +....+..|.|.++..+|+|.|+|.|.|..|... ..+.
T Consensus         9 ~~~~v~~G~~~~l~C~~~g~P~p~-v~W~k~g~~i~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~   84 (89)
T d1cs6a4           9 TDTEADIGSDLRWSCVASGKPRPA-VRWLRDGQPLASQN--RIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVY-ASAE   84 (89)
T ss_dssp             CCEEEETTCCEEEECEEEEESCCE-EEEEETTEECCCCS--SEEEETTEEEESSCCGGGCEEEEEEEEETTEEEE-EEEE
T ss_pred             CCEEECCCCcEEEEEEEEEEcCCE-EEEEEeeccccccc--eeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEE-EEEE
Confidence            445788999999999999999887 99999999987533  4555678999999999999999999999999765 4677


Q ss_pred             EEEe
Q psy3823         208 LNIN  211 (365)
Q Consensus       208 l~v~  211 (365)
                      |.|.
T Consensus        85 l~V~   88 (89)
T d1cs6a4          85 LTVQ   88 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7775

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.5e-13  Score=94.11  Aligned_cols=76  Identities=14%  Similarity=0.297  Sum_probs=61.6

Q ss_pred             ccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEE
Q psy3823         129 ASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDL  208 (365)
Q Consensus       129 ~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l  208 (365)
                      +..+.+|+++.|.|.+.|.|.|..|.|++||..+...       ....+.|.....+|+|.|+|.|.|..|...++.+.|
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~-------~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v   82 (85)
T d1rhfa2          10 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATV   82 (85)
T ss_dssp             CEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS-------EESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEE
T ss_pred             cEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCC-------CCcceEEecCCccccEEEEEEEEcCCCcEEEEEEEE
Confidence            3468899999999999999988559999999988642       224556677778899999999999999776677777


Q ss_pred             EEe
Q psy3823         209 NIN  211 (365)
Q Consensus       209 ~v~  211 (365)
                      .|+
T Consensus        83 ~Vk   85 (85)
T d1rhfa2          83 HLQ   85 (85)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            763

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-13  Score=95.46  Aligned_cols=85  Identities=11%  Similarity=0.182  Sum_probs=69.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeE--ecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS--IQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      +|....+.+|+.+.|.|.+.+.|.+ .+.|+|++.. +........  ........|.|.+++.+|.|.|+|.|.|..|.
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p-~v~W~k~g~~-l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   79 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAV-VQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGET   79 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSC-CEEEEETTEE-CCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTC
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCc-eEEEEEeecc-cccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCC
Confidence            5677889999999999998899999 9999999988 655443222  23445568999999999999999999999887


Q ss_pred             C-cccEEEEE
Q psy3823          96 Q-RTPCTFHV  104 (365)
Q Consensus        96 ~-~~~~~l~V  104 (365)
                      . ...+.|+|
T Consensus        80 ~~S~~~~l~V   89 (91)
T d1rhfa1          80 EISQPVWLTV   89 (91)
T ss_dssp             EECCCEEEEE
T ss_pred             EEEEEEEEEE
Confidence            5 46788877

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.1e-13  Score=93.04  Aligned_cols=86  Identities=15%  Similarity=0.163  Sum_probs=68.3

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      |......+..+.+.+|+++.|.|.+ .+.|.+ .++|++++.. +..    . ......+.|.|.+++.+|+|.|+|.|.
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p-~v~W~~~~~~-~~~----~-~~~~~~~~L~i~~v~~~D~G~Y~C~As   75 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGA-SVQWRGLDTS-LGA----V-QSDTGRSVLTVRNASLSAAGTRVCVGS   75 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTC-EEEEESSTTT-TCC----E-EEESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCcc-EEEEEEeeee-eee----e-eccCceeeEEcCccChhhCCcEEEEEE
Confidence            5555555556778999999999985 478888 9999998877 532    1 123345689999999999999999999


Q ss_pred             eCCCCCcccEEEEE
Q psy3823          91 NEQGNQRTPCTFHV  104 (365)
Q Consensus        91 ~~~~~~~~~~~l~V  104 (365)
                      |..+..+.++.|.|
T Consensus        76 n~~g~~~~s~~l~V   89 (90)
T d1gsma1          76 CGGRTFQHTVQLLV   89 (90)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEE
Confidence            98888778888877

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3e-13  Score=96.30  Aligned_cols=94  Identities=15%  Similarity=0.218  Sum_probs=71.1

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-----CCceeEeeCCCEEEEEEcCCC-cccCeE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-----PLTSYSIQDGSTSVARYTPTS-ELEYGT  296 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~s~l~i~~v~-~~d~G~  296 (365)
                      +|.+...+.... +.+|+.+.|.|.+.|.|++..+.|++++......     ...+.+...+..+.|.|.++. .+|+|.
T Consensus         2 PP~i~~~~~~~~-v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           2 PPRVKAVKSSEH-INEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             SCCCEESCSEEE-ECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CceEEEcCCcEE-ECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            566655444433 8899999999999999987449999876433211     112334556677889999998 579999


Q ss_pred             EEEEEEcCCccceecEEEEEE
Q psy3823         297 LLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       297 Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      |+|.|.|..|..+..+.|.|+
T Consensus        81 Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEEEEEEC
Confidence            999999999999998888773

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.44  E-value=2.6e-13  Score=98.17  Aligned_cols=95  Identities=15%  Similarity=0.178  Sum_probs=68.9

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCC---c--ee-------EeeCCCEEEEEEcCC
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPL---T--SY-------SIQDGSTSVARYTPT  289 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~---~--~~-------~~~~~~~s~l~i~~v  289 (365)
                      .+|.+....+....+..|+++.|.|.+.|.|.|. +.|++++........   .  ..       .......+.|.|.++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   81 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH-IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV   81 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCE-EEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCe-EEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCC
Confidence            5676665433334489999999999999999998 999987643211111   0  00       022334578999999


Q ss_pred             CcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         290 SELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       290 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      ..+|.|.|+|.|.|..|....++.|.|.
T Consensus        82 ~~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          82 TFEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CHHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            9999999999999999999999998874

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.2e-13  Score=91.74  Aligned_cols=81  Identities=15%  Similarity=0.183  Sum_probs=64.1

Q ss_pred             CccceeeeecCceEEEEEEEe-eeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         229 SQQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       229 ~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .+.....+..|+++.|.|.+. +.|.+. +.|++.+....    ..  ......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         8 ~p~~~~~~~~G~~~~l~C~~~~g~p~p~-v~W~~~~~~~~----~~--~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~   80 (90)
T d1gsma1           8 PPEPVVAVALGASRQLTCRLACADRGAS-VQWRGLDTSLG----AV--QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT   80 (90)
T ss_dssp             SCCSEEEEETTCCEEEEEEECCSSTTCE-EEEESSTTTTC----CE--EEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCCeEEEEeCCcEEEEEEecCCCCccE-EEEEEeeeeee----ee--eccCceeeEEcCccChhhCCcEEEEEEeCCCc
Confidence            333334488999999999985 688887 99998765431    11  22345678999999999999999999999999


Q ss_pred             ceecEEEEE
Q psy3823         308 QRTPCTFHV  316 (365)
Q Consensus       308 ~~~~~~l~v  316 (365)
                      .+.++.|.|
T Consensus        81 ~~~s~~l~V   89 (90)
T d1gsma1          81 FQHTVQLLV   89 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            999888876

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.43  E-value=4.6e-13  Score=94.48  Aligned_cols=83  Identities=17%  Similarity=0.288  Sum_probs=67.7

Q ss_pred             CccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE----eeceEEEeeecCCCCeEEEEEEEcCCCCCCc
Q psy3823         128 NASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII----TNQTLVLQSVTRHSGGLYACSAINSQGEGGS  203 (365)
Q Consensus       128 ~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s  203 (365)
                      .+..+.+|+++.|.|.+.|.|.+. +.|+++|..+..........    ...+|.|.+++.+|+|.|+|.|.|..|...+
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~-v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGY-PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCC-CEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCE-EEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            345788999999999999999887 99999999987544433322    1457999999999999999999999998766


Q ss_pred             ccEEEEEe
Q psy3823         204 TPFDLNIN  211 (365)
Q Consensus       204 ~~~~l~v~  211 (365)
                      ..+.|+|.
T Consensus        90 ~s~~L~Vl   97 (97)
T d1biha3          90 HSLKLTVV   97 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEC
Confidence            67777763

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5e-13  Score=92.88  Aligned_cols=77  Identities=18%  Similarity=0.241  Sum_probs=63.9

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +..|+.+.|.|.+.|.|.|. +.|++++.....  ..  .......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus        13 ~~~G~~v~l~C~~~g~p~p~-i~W~~~~~~~~~--~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~   87 (90)
T d1vcaa2          13 AQIGDSVSLTCSTTGCESPF-FSWRTQIDSPLN--GK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE   87 (90)
T ss_dssp             EETTSCEEEEEEEESCSSCE-EEEEETTCCCCS--SE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             EECCCEEEEEEeccCCCCce-EEEEecCcccee--ee--eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEE
Confidence            67899999999999999998 999998764321  11  12335567899999999999999999999999999988888


Q ss_pred             EE
Q psy3823         316 VV  317 (365)
Q Consensus       316 v~  317 (365)
                      |.
T Consensus        88 V~   89 (90)
T d1vcaa2          88 IY   89 (90)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=4e-13  Score=93.21  Aligned_cols=81  Identities=20%  Similarity=0.287  Sum_probs=66.6

Q ss_pred             CCceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ..+....+.+|+++.|.|.+. +.|.+ .+.|++++.. +.....  ...++   .|.|.+++.+|+|.|+|.|.|..|.
T Consensus         7 ~~p~~~~v~~G~~~~l~C~~~~~~p~~-~v~W~k~~~~-~~~~~~--~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~   79 (89)
T d1gl4b_           7 EEQRSQSVRPGADVTFICTAKSKSPAY-TLVWTRLHNG-KLPSRA--MDFNG---ILTIRNVQPSDAGTYVCTGSNMFAM   79 (89)
T ss_dssp             CSCCEEEECTTCCEEEEEEEEESSSCC-EEEEEEGGGB-CCCTTE--EEETT---EEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             cCCCeEEEeCCCcEEEEEEccCCCCCC-EEEEecCCce-eecccc--Eeece---EEEEecCCcccCEEEEEEEEECCCE
Confidence            456678899999999999964 67888 9999999887 544432  22344   7999999999999999999999998


Q ss_pred             CcccEEEEE
Q psy3823          96 QRTPCTFHV  104 (365)
Q Consensus        96 ~~~~~~l~V  104 (365)
                      ....++|.|
T Consensus        80 ~~~~~~l~V   88 (89)
T d1gl4b_          80 DQGTATLHV   88 (89)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            888888877

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.7e-13  Score=93.81  Aligned_cols=76  Identities=22%  Similarity=0.365  Sum_probs=64.7

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      ..+.+|+.++|.|.+.+.+++.++.||+||..+....      ....|.|.+++.+|+|.|+|++.|..+...+..+.|+
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~   83 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT   83 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc------ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEE
Confidence            3688999999999998777777799999999886422      2367999999999999999999998887667889999


Q ss_pred             Ee
Q psy3823         210 IN  211 (365)
Q Consensus       210 v~  211 (365)
                      |.
T Consensus        84 V~   85 (89)
T d1f2qa2          84 VI   85 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.42  E-value=4.7e-13  Score=92.56  Aligned_cols=76  Identities=21%  Similarity=0.332  Sum_probs=63.3

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      ..+.+|++++|.|.+.+++++..+.|++||..+..      ...+..|.|.+++.+|+|.|+|.+.|..+...+..+.|+
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~it   85 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNIT   85 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccce------eccccccEECccceeccceEEEEEEeCCCCeEEeeEEEE
Confidence            35789999999999986666666999999988753      234568999999999999999999998887666778888


Q ss_pred             Ee
Q psy3823         210 IN  211 (365)
Q Consensus       210 v~  211 (365)
                      |.
T Consensus        86 V~   87 (89)
T d1fnla2          86 IT   87 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.42  E-value=3.3e-13  Score=93.18  Aligned_cols=76  Identities=18%  Similarity=0.346  Sum_probs=63.4

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEEcCCCCCCcccEEEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~l~  209 (365)
                      ..+.+|+.++|.|.+.+++++..+.|++||..+....      .+..|.|.+++.+|+|.|+|.|.|..+...+..+.|.
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~   83 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR------SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTIT   83 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES------SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc------cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEE
Confidence            3578999999999998766666699999999886422      2467999999999999999999999887666788888


Q ss_pred             Ee
Q psy3823         210 IN  211 (365)
Q Consensus       210 v~  211 (365)
                      |+
T Consensus        84 V~   85 (88)
T d2fcba2          84 VQ   85 (88)
T ss_dssp             EC
T ss_pred             Ee
Confidence            87

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.42  E-value=4.1e-13  Score=97.08  Aligned_cols=92  Identities=15%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC----c--e-------eEecCCeEEEEEEccC
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL----T--S-------YSIQDGSTSVARYTPT   77 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~----~--~-------~~~~~~~~~~l~i~~~   77 (365)
                      .|.+....+....+.+|+++.|.|.+.+.|.+ .+.|++++.. .....    .  .       ........+.|.|.++
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   81 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQWIKHVEK-NGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV   81 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCC-EEEEEEEC--------------CEEEECCEEEEETTEEEEEEEECSC
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCC-eEEEEecCcc-CCceeccCCceeEeecccceeEEecCCcEEEEECCC
Confidence            46665555677889999999999998899999 9999997654 21110    0  0       1113345568999999


Q ss_pred             CCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          78 SELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      +.+|.|.|+|.|.|..|.....+.|+|
T Consensus        82 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          82 TFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            999999999999999999888888887

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.6e-13  Score=92.20  Aligned_cols=71  Identities=8%  Similarity=0.004  Sum_probs=61.4

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEE
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCT  101 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~  101 (365)
                      ..+.+|++++|.|.+.+.|.| .+.|++++.. +       ...+.   .|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P-~i~W~~~~~~-~-------~~~~~---~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~   76 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSP-SVQCRSPRGK-N-------IQGGK---TLSVSQLELQDSGTWTCTVLQNQKKVEFKID   76 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCC-EEEEECTTCC-E-------EEESS---EEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEECCCeEEEEEEeEcCCch-heEEEeeccc-c-------eeeee---eeeeeecccccccEEEEEEEeCCCEEEEEEE
Confidence            357899999999999999999 9999998766 2       22333   7899999999999999999999998888888


Q ss_pred             EEE
Q psy3823         102 FHV  104 (365)
Q Consensus       102 l~V  104 (365)
                      |.|
T Consensus        77 v~V   79 (84)
T d2nxyb2          77 IVV   79 (84)
T ss_dssp             ECE
T ss_pred             EEE
Confidence            888

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.41  E-value=7.8e-14  Score=98.00  Aligned_cols=82  Identities=18%  Similarity=0.320  Sum_probs=65.5

Q ss_pred             CccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE-eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccE
Q psy3823         128 NASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF  206 (365)
Q Consensus       128 ~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~  206 (365)
                      .+..+.+|+.+.|.|.+.|.|.+..+.|++||..+.......... .+++|.|.++..+|+|.|+|.|.|..|...+..+
T Consensus        10 ~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~v   89 (94)
T d1biha1          10 AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVI   89 (94)
T ss_dssp             SEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEEEEEE
Confidence            335688999999999999998776699999999886544332222 3678999999999999999999999997655555


Q ss_pred             EEE
Q psy3823         207 DLN  209 (365)
Q Consensus       207 ~l~  209 (365)
                      .|.
T Consensus        90 ~l~   92 (94)
T d1biha1          90 SFR   92 (94)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.2e-13  Score=92.64  Aligned_cols=82  Identities=11%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE--eeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc-ee
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS--IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ-RT  310 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~  310 (365)
                      ..+..|+.+.|.|.+.+.|.|. +.|++++...... ....+  ......+.|.|.+++.+|+|.|+|.|.|..|.. +.
T Consensus         6 ~~v~~G~~~~l~C~v~g~p~p~-v~W~k~g~~l~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~   83 (91)
T d1rhfa1           6 LTVSQGQPVKLNCSVEGMEEPD-IQWVKDGAVVQNL-DQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ   83 (91)
T ss_dssp             EEEETTCCEEEEEEEESCSSCC-EEEEETTEECCSS-EEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECC
T ss_pred             EEEcCCCeEEEEEEEEecCCce-EEEEEeecccccc-eeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEE
Confidence            3488999999999999999998 9999998754332 22222  233445679999999999999999999999974 56


Q ss_pred             cEEEEEE
Q psy3823         311 PCTFHVV  317 (365)
Q Consensus       311 ~~~l~v~  317 (365)
                      ++.|.|.
T Consensus        84 ~~~l~V~   90 (91)
T d1rhfa1          84 PVWLTVE   90 (91)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            7888774

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=1.8e-13  Score=97.29  Aligned_cols=92  Identities=17%  Similarity=0.252  Sum_probs=69.9

Q ss_pred             CCeEeeCC-ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce--eEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823          11 EPVCKQSQ-QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS--YSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        11 ~p~~~~~~-~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      +|.+...+ .....+.+|+++.|.|.+.+.|.+ .+.|++++.. +......  ........+.|.|.+++.+|.|.|+|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p-~i~W~~~g~~-i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   80 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEP-TMSWTKDGEP-IENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC   80 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCC-EEEEEETTEE-CCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCC-EEEEEeCCcc-cccccccceeEEeecCceEEEeCCCCcccCEEEEE
Confidence            45554433 344566789999999998899999 9999999987 6543221  11122223489999999999999999


Q ss_pred             EEEeCCCCCcccEEEEE
Q psy3823          88 WARNEQGNQRTPCTFHV  104 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V  104 (365)
                      .|.|..|.....+.|+|
T Consensus        81 ~a~N~~G~~~~~~~l~V   97 (100)
T d1qz1a3          81 IAENKAGEQDASIHLKV   97 (100)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999998888888888

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.6e-13  Score=93.05  Aligned_cols=79  Identities=19%  Similarity=0.286  Sum_probs=65.4

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccE
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPC  100 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~  100 (365)
                      ...+.+|+.+.|.|.+.+.|.+ .++|++++.. +.....   ......+.|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p-~i~W~~~~~~-~~~~~~---~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~   84 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESP-FFSWRTQIDS-PLNGKV---TNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGI   84 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSC-EEEEEETTCC-CCSSEE---EEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCc-eEEEEecCcc-ceeeee---eeecCCcEEEEecccccccceEEEEEEeCCCEEEEEE
Confidence            3556789999999998899999 9999998876 433221   2334456899999999999999999999999888888


Q ss_pred             EEEE
Q psy3823         101 TFHV  104 (365)
Q Consensus       101 ~l~V  104 (365)
                      +|.|
T Consensus        85 ~v~V   88 (90)
T d1vcaa2          85 QVEI   88 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8887

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-12  Score=94.91  Aligned_cols=93  Identities=10%  Similarity=-0.016  Sum_probs=68.7

Q ss_pred             ceecCccceeeeecCceEEEEEEEeeeC---CCceeEEEeCCCCCCCCCCceeE--------eeCCCEEEEEEcCCCccc
Q psy3823         225 VCKQSQQRIYGALRNEQVLVSCTVDANP---QAQYFTWAFNNSDTAPRPLTSYS--------IQDGSTSVARYTPTSELE  293 (365)
Q Consensus       225 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~~~~~W~~~~~~~~~~~~~~~~--------~~~~~~s~l~i~~v~~~d  293 (365)
                      .+...+.. ..+..|++++|.|.+.|.|   .|. +.|++++..........++        ......+.|.|.+++.+|
T Consensus         6 ~Fv~~P~~-~~v~~G~~v~l~C~v~g~p~~~~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           6 LFVMRPQD-GEVTVGGSITFSARVAGASLLKPPV-VKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             SEEECCCC-EEEETTSEEEEEEEEECCSCSSSCE-EEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             EeEECCCe-EEEECCCCEEEEEeecCCCCCCCCE-EEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            34333333 3488999999999999988   465 9999987543322221111        111235679999999999


Q ss_pred             CeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         294 YGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       294 ~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      +|.|+|.|.|..|..+.++.|.|..+
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEec
Confidence            99999999999999999999999754

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.3e-12  Score=90.59  Aligned_cols=78  Identities=18%  Similarity=0.273  Sum_probs=61.9

Q ss_pred             eeeeecCceEEEEEEEe-eeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         233 IYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       233 ~~~~~~g~~~~l~C~~~-~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                      ...+.+|+.+.|.|.+. +.|.+. +.|++++......  . ....++   .|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus        11 ~~~v~~G~~~~l~C~~~~~~p~~~-v~W~k~~~~~~~~--~-~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~   83 (89)
T d1gl4b_          11 SQSVRPGADVTFICTAKSKSPAYT-LVWTRLHNGKLPS--R-AMDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQGT   83 (89)
T ss_dssp             EEEECTTCCEEEEEEEEESSSCCE-EEEEEGGGBCCCT--T-EEEETT---EEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             eEEEeCCCcEEEEEEccCCCCCCE-EEEecCCceeecc--c-cEeece---EEEEecCCcccCEEEEEEEEECCCEEEEE
Confidence            34488999999999997 467787 9999988754322  1 122233   49999999999999999999999999988


Q ss_pred             EEEEEE
Q psy3823         312 CTFHVV  317 (365)
Q Consensus       312 ~~l~v~  317 (365)
                      +.|.|+
T Consensus        84 ~~l~V~   89 (89)
T d1gl4b_          84 ATLHVQ   89 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888774

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.39  E-value=1.3e-12  Score=92.09  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=64.5

Q ss_pred             eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCc-eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccce-ec
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLT-SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQR-TP  311 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~-~~  311 (365)
                      ..+..|+++.|.|.+.|.|.+. +.|+++|......... .........+.|.|.+++.+|+|.|+|.|.|..|... .+
T Consensus        13 ~~~~~G~~v~l~C~~~g~P~~~-v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s   91 (97)
T d1biha3          13 MMAKAGDVTMIYCMYGSNPMGY-PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS   91 (97)
T ss_dssp             EEEETTSCEEEEEEEECSSCCC-CEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEE
T ss_pred             EEEecCCeEEEEEEEEEecCCE-EEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEE
Confidence            3488999999999999999998 9999998755433222 2222233345699999999999999999999999864 57


Q ss_pred             EEEEEE
Q psy3823         312 CTFHVV  317 (365)
Q Consensus       312 ~~l~v~  317 (365)
                      +.|.|.
T Consensus        92 ~~L~Vl   97 (97)
T d1biha3          92 LKLTVV   97 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            778774

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.8e-13  Score=92.78  Aligned_cols=73  Identities=12%  Similarity=0.115  Sum_probs=62.2

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +.+|+.++|.|.+.|.|+|. +.|++++...         ..+.  ..|.|.+++.+|+|.|+|.|.|..|..+..+.|.
T Consensus        11 v~~G~~~~L~C~~~g~p~P~-i~W~~~~~~~---------~~~~--~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~   78 (84)
T d2nxyb2          11 LLQGQSLTLTLESPPGSSPS-VQCRSPRGKN---------IQGG--KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV   78 (84)
T ss_dssp             EETTCCEEEEEECCTTCCCE-EEEECTTCCE---------EEES--SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EECCCeEEEEEEeEcCCchh-eEEEeecccc---------eeee--eeeeeeecccccccEEEEEEEeCCCEEEEEEEEE
Confidence            88999999999999999998 9999976532         1112  2489999999999999999999999999999998


Q ss_pred             EEcCc
Q psy3823         316 VVKAG  320 (365)
Q Consensus       316 v~~~~  320 (365)
                      |...+
T Consensus        79 V~~~~   83 (84)
T d2nxyb2          79 VLAFQ   83 (84)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            87654

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.5e-13  Score=99.63  Aligned_cols=94  Identities=10%  Similarity=0.139  Sum_probs=72.0

Q ss_pred             ccCCeEee----CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-----------------------
Q psy3823           9 TDEPVCKQ----SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-----------------------   61 (365)
Q Consensus         9 ~~~p~~~~----~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-----------------------   61 (365)
                      |++|.+..    ..+..+.+.+|++++|.|.+.|.|.+ .+.|++++.. +......                       
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p-~i~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAP-TVIWQKAITQ-GNKAPARPAPDAPEDTGDSDEWVFDKKLLC   79 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCC-EEEEEEECCC-SCSSCCCCCCCCCCCCCCSSCCCCSCCCCC
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCC-eEEEeeCCeE-ccCCccceeeecccccccceeeecCCceee
Confidence            45565532    24567789999999999998899999 9999998765 4322110                       


Q ss_pred             ------eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          62 ------YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        62 ------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                            ..........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus        80 ~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_          80 ETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             SCSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ccCceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEE
Confidence                  1112234568999999999999999999999999888888888

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.2e-13  Score=98.66  Aligned_cols=85  Identities=11%  Similarity=0.159  Sum_probs=66.6

Q ss_pred             ceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC----------------------------CceeEeeCCCEEE
Q psy3823         232 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP----------------------------LTSYSIQDGSTSV  283 (365)
Q Consensus       232 ~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~----------------------------~~~~~~~~~~~s~  283 (365)
                      ....+..|+.+.|.|.+.|.|.|. +.|++++.......                            .+..+......+.
T Consensus        17 ~~v~v~~G~~v~L~C~v~G~P~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   95 (130)
T d1gxea_          17 DTIVVVAGNKLRLDVPISGDPAPT-VIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI   95 (130)
T ss_dssp             CEEEESSSSCCCCEEECCSBSCCE-EEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred             CCEEEEcCCeEEEEEEEEEecCCe-EEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEE
Confidence            344588999999999999999998 99999764332110                            0112233445678


Q ss_pred             EEEcCCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         284 ARYTPTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       284 l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      |.|.++..+|+|.|+|.|.|.+|..+..+.|.|.
T Consensus        96 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          96 FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            9999999999999999999999999998888774

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.5e-12  Score=92.64  Aligned_cols=87  Identities=13%  Similarity=0.218  Sum_probs=66.8

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCC------CCceeEecCCeEEEEEEccCC-CCCCeEEEEEE
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPR------PLTSYSIQDGSTSVARYTPTS-ELEYGTLLCWA   89 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~------~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a   89 (365)
                      ..+....+.+|+.++|.|.+.+.|.+..++|++++.. ...      ............+.|.|.++. .+|+|.|+|.|
T Consensus         7 ~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A   85 (101)
T d3b5ha1           7 AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDS-EDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNG   85 (101)
T ss_dssp             ESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSS-SCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEE
T ss_pred             EcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccce-eeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEE
Confidence            3456667899999999999888987757999998654 221      111223344556789999998 57999999999


Q ss_pred             EeCCCCCcccEEEEE
Q psy3823          90 RNEQGNQRTPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V  104 (365)
                      .|..|.....+.|.|
T Consensus        86 ~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          86 TSSKGSDQAIITLRV  100 (101)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEE
Confidence            999998888888877

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.6e-14  Score=94.69  Aligned_cols=71  Identities=23%  Similarity=0.251  Sum_probs=58.6

Q ss_pred             eeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         233 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       233 ~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      ...+.+|+.+.|.|.+.|.|.|. +.|+++|......              +.+..++.+|+|.|.|.|.|..|..+..+
T Consensus        13 ~~~~~~G~~~~l~C~a~G~P~P~-v~W~k~g~~~~~~--------------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~   77 (84)
T d2oz4a3          13 NWTWPENSQQTPMCQAWGNPLPE-LKCLKDGTFPLPI--------------GESVTVTRDLEGTYLCRARSTQGEVTREV   77 (84)
T ss_dssp             EEEEETTCEECCCCCCEEESCCE-EEEEETTTEECCT--------------TSCEECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEeCCCEEEEEEEEeEcCccE-EEEEEeeccceee--------------eeeeccccCCCCEEEEEEEcCCCEEEEEE
Confidence            34488999999999999999998 9999988643211              22346778999999999999999999988


Q ss_pred             EEEEEc
Q psy3823         313 TFHVVK  318 (365)
Q Consensus       313 ~l~v~~  318 (365)
                      .|.|..
T Consensus        78 ~l~V~~   83 (84)
T d2oz4a3          78 TVNVLS   83 (84)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888864

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.37  E-value=1.9e-12  Score=90.68  Aligned_cols=88  Identities=16%  Similarity=0.289  Sum_probs=63.7

Q ss_pred             CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      |.+...+.. ..+.+|+.+.|.|.+.|.|.|..+.|+++|..............+  ...|.|.++..+|+|.|+|.|.|
T Consensus         3 P~i~~~p~~-~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           3 PVLKDQPAE-VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD--EGSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CEECCCCSE-EEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTT--SCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEecCCc-EEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeeccc--ceEEEEeccChhcCeEEEEEEEe
Confidence            444444433 348999999999999999876449999998865443333333222  23499999999999999999999


Q ss_pred             CCccce-ecEEE
Q psy3823         304 EQGSQR-TPCTF  314 (365)
Q Consensus       304 ~~g~~~-~~~~l  314 (365)
                      ..|... ..+.|
T Consensus        80 ~~G~~~s~~v~l   91 (94)
T d1biha1          80 PAGVASSRVISF   91 (94)
T ss_dssp             TTEEEECCCEEE
T ss_pred             CCCEEEEEEEEE
Confidence            999754 44443

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-13  Score=94.40  Aligned_cols=80  Identities=20%  Similarity=0.132  Sum_probs=64.8

Q ss_pred             cCCeEeeC-CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          10 DEPVCKQS-QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        10 ~~p~~~~~-~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      |+|.+... .+..+.+.+|+.+.|.|.+.|+|.+ .++|+|++.. +....             .+.+++.+|+|.|+|.
T Consensus         1 Y~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P-~v~W~k~g~~-~~~~~-------------~~~~v~~~d~G~Y~C~   65 (84)
T d2oz4a3           1 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP-ELKCLKDGTF-PLPIG-------------ESVTVTRDLEGTYLCR   65 (84)
T ss_dssp             EEEECCGGGSCSEEEEETTCEECCCCCCEEESCC-EEEEEETTTE-ECCTT-------------SCEECCGGGCEEEEEE
T ss_pred             CCCceeecCCCccEEEeCCCEEEEEEEEeEcCcc-EEEEEEeecc-ceeee-------------eeeccccCCCCEEEEE
Confidence            56776543 3567889999999999999999999 9999999876 33211             2345678899999999


Q ss_pred             EEeCCCCCcccEEEEE
Q psy3823          89 ARNEQGNQRTPCTFHV  104 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V  104 (365)
                      |.|..|.....+.|+|
T Consensus        66 A~N~~G~~~~~~~l~V   81 (84)
T d2oz4a3          66 ARSTQGEVTREVTVNV   81 (84)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEcCCCEEEEEEEEEE
Confidence            9999998888888888

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=2.2e-12  Score=90.67  Aligned_cols=79  Identities=18%  Similarity=0.256  Sum_probs=63.8

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-cc
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-TP   99 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~   99 (365)
                      ...+.+|++++|.|.+.+ +.+ .+.|++++.. +............  .+|.|.+++.+|.|.|+|.|.|..+... ..
T Consensus        12 ~~~v~~g~~v~l~C~~~~-~~~-~v~W~~~~~~-l~~~~~~~~~~~~--~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~   86 (96)
T d1l6za2          12 NTTVKELDSVTLTCLSND-IGA-NIQWLFNSQS-LQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRRSNS   86 (96)
T ss_dssp             CSEECTTSCEEEEECCCC-SSC-EEEEEETTEE-CCCCTTEEEETTT--TEEEECSCCGGGCEEEEEEEESSSCCEECCC
T ss_pred             ceEEeCCCeEEEEEccCC-CCC-CEEEEEeeee-cccccceeccCCc--eEEEEeccchhhceEEEEEEEeCCCCeEEEe
Confidence            345789999999999755 667 9999999998 7665554443332  2799999999999999999999888765 67


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      +.|+|
T Consensus        87 ~~L~V   91 (96)
T d1l6za2          87 IKLDI   91 (96)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            89999

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=2.8e-12  Score=90.36  Aligned_cols=82  Identities=20%  Similarity=0.431  Sum_probs=62.0

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEe-CCeEEeeCCCCceEEe----eceEEEeeecCCCCeEEEEEEEcCCCCCCcc
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTH-NGITISNNASAGRIIT----NQTLVLQSVTRHSGGLYACSAINSQGEGGST  204 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~-~~~~l~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~  204 (365)
                      ..+.+|+++.|.|.+.|.|++..+.|++ +|..+...........    ..+|.|.+++.+|+|.|+|.|.|..|...+.
T Consensus        10 ~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   89 (97)
T d1epfa1          10 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA   89 (97)
T ss_dssp             EEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEE
T ss_pred             EEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEE
Confidence            4678999999999999988654599998 5565544332222111    4679999999999999999999999865546


Q ss_pred             cEEEEEe
Q psy3823         205 PFDLNIN  211 (365)
Q Consensus       205 ~~~l~v~  211 (365)
                      ++.|+|.
T Consensus        90 tv~l~V~   96 (97)
T d1epfa1          90 TVNVKIF   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6777664

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.5e-12  Score=92.47  Aligned_cols=91  Identities=15%  Similarity=0.212  Sum_probs=67.2

Q ss_pred             CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE----ee-C------CCEEEEEEcCCCcc
Q psy3823         224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS----IQ-D------GSTSVARYTPTSEL  292 (365)
Q Consensus       224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~----~~-~------~~~s~l~i~~v~~~  292 (365)
                      |.+..+......+..|+++.|.|.+.+.|.|. +.|+++|............    .. .      ...+.|.|.+++.+
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~-i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDI-AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCE-EEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCe-EEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            45554444445578899999999999999998 9999988754433322211    00 0      12468999999999


Q ss_pred             cCe-EEEEEEEcCCccceecEEEE
Q psy3823         293 EYG-TLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       293 d~G-~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      |.| .|+|.|.|..|..+..+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999998877664

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.3e-13  Score=93.65  Aligned_cols=88  Identities=17%  Similarity=0.283  Sum_probs=67.1

Q ss_pred             CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCe-EEEEEEE
Q psy3823         224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYG-TLLCWAR  302 (365)
Q Consensus       224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G-~Y~C~a~  302 (365)
                      |.+....... .+.+|+.+.|.|.+.|.|.|. +.|++++.....   ............|.|.+++.+|.| .|+|.|.
T Consensus         3 P~i~~~~~~~-~v~~G~~v~l~C~~~g~P~p~-v~W~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~   77 (92)
T d2ifga1           3 PTLKVQVPNA-SVDVGDDVLLRCQVEGRGLEQ-AGWILTELEQSA---TVMKSGGLPSLGLTLANVTSDLNRKNVTCWAE   77 (92)
T ss_dssp             CEEEEECCSS-CCBTTCCEEEEEEEECSSCCC-CCEEESCCCSSE---EECCCCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             CEEEEeCCCE-EEeCCCEEEEeeeccCCCCcE-EEEEECCceeee---eeeeeeeccceeEEEccccccccceEEEEEEE
Confidence            5555433333 388999999999999999998 999998764321   112223445567999999999998 6999999


Q ss_pred             cCCccceecEEEEE
Q psy3823         303 NEQGSQRTPCTFHV  316 (365)
Q Consensus       303 n~~g~~~~~~~l~v  316 (365)
                      |..|..+.++.|.|
T Consensus        78 N~~G~~~~s~~l~V   91 (92)
T d2ifga1          78 NDVGRAEVSVQVNV   91 (92)
T ss_dssp             ETTEECCEEECCCC
T ss_pred             cCCCEEEEEEEEEE
Confidence            99999988877765

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.35  E-value=5.2e-13  Score=94.23  Aligned_cols=90  Identities=21%  Similarity=0.398  Sum_probs=67.0

Q ss_pred             CCCeEEEEcCCccCccceec---CCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe-eceEEEeeecCCCCeEE
Q psy3823         115 DKPSVQIKLGRNLNASVLNE---GVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT-NQTLVLQSVTRHSGGLY  190 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~---g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y  190 (365)
                      ++|.+...|..    ..+.+   |+++.|.|.+.|.|.+. +.|++||..+........... ...|.|..+...|+|.|
T Consensus         3 ~~P~f~~~P~~----~~~~~g~~~~~v~l~C~~~g~P~p~-v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   77 (97)
T d1cs6a1           3 YGPVFEEQPAH----TLFPEGSAEEKVTLTCRARANPPAT-YRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSY   77 (97)
T ss_dssp             EEEEEEECCCC----EEEETTCSCCEEEECCEEEEESCCE-EEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEE
T ss_pred             cCCEEEEeCCC----EEEECccCCCeEEEEEEEEEeCCCE-EEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEE
Confidence            35665554422    23444   47899999999999887 999999999976555444444 45677777888999999


Q ss_pred             EEEEEcCCCCCCcccEEEE
Q psy3823         191 ACSAINSQGEGGSTPFDLN  209 (365)
Q Consensus       191 ~C~~~~~~~~~~s~~~~l~  209 (365)
                      +|.|.|..|...++.+.|.
T Consensus        78 ~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          78 QCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEEETTEEEECCCEEEE
T ss_pred             EEEEEECCCEEEEEEEEEe
Confidence            9999999997665666664

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=1.3e-12  Score=91.04  Aligned_cols=79  Identities=13%  Similarity=0.208  Sum_probs=61.8

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTFH  315 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  315 (365)
                      +.+|+.+.|.|.+.|.|.|. +.|++++................  ..|.|.+++.+|+|.|+|.|.|..|.......+.
T Consensus        13 v~~G~~~~l~C~v~g~p~p~-v~W~~~~~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~   89 (92)
T d1epfa2          13 FKEGEDAVIVCDVVSSLPPT-IIWKHKGRDVILKKDVRFIVLSN--NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ   89 (92)
T ss_dssp             CCTTSCEEECCEEECSSCCE-EEEEETTEEGGGGCCTTEEECTT--SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEE
T ss_pred             EeCCCcEEEEEEEeecCCCe-EEEEEcCcccccccceeeeeeee--eeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEE
Confidence            88999999999999999998 99999987444333222222222  2399999999999999999999988777777776


Q ss_pred             EE
Q psy3823         316 VV  317 (365)
Q Consensus       316 v~  317 (365)
                      |.
T Consensus        90 Vi   91 (92)
T d1epfa2          90 VI   91 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=89.18  Aligned_cols=83  Identities=17%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      |.+...+.... +.+|+.+.|.|.+.|.|.|..+.|+++|.......       . .  .+.|.....+|+|.|+|.|.|
T Consensus         2 P~f~~~P~~~~-v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-------~-~--~~~l~~~~~~d~G~Y~C~A~N   70 (85)
T d1rhfa2           2 PFFTVEPKDLA-VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------P-S--PSVLNVTGVTQSTMFSCEAHN   70 (85)
T ss_dssp             CEEEECCCCEE-ECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-------E-S--SEEEEECCCSSCEEEEEEEEE
T ss_pred             CcEEEeCCcEE-EcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-------C-c--ceEEecCCccccEEEEEEEEc
Confidence            44444443333 88999999999999999873399999986442211       1 1  244555566899999999999


Q ss_pred             CCccc-eecEEEEEE
Q psy3823         304 EQGSQ-RTPCTFHVV  317 (365)
Q Consensus       304 ~~g~~-~~~~~l~v~  317 (365)
                      ..|.. ++.+.|.|+
T Consensus        71 ~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          71 LKGLASSRTATVHLQ   85 (85)
T ss_dssp             TTEEEECCCEEEEEC
T ss_pred             CCCcEEEEEEEEEEC
Confidence            99964 457777763

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.3e-12  Score=91.10  Aligned_cols=81  Identities=20%  Similarity=0.390  Sum_probs=63.8

Q ss_pred             CccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEE-eeceEEEeeecCCCCeEEEEEEEcCCCCCCcccE
Q psy3823         128 NASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRII-TNQTLVLQSVTRHSGGLYACSAINSQGEGGSTPF  206 (365)
Q Consensus       128 ~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~  206 (365)
                      .+..+.+|+.+.|.|.+.|.|.|. +.|++++..+.......... .+++|.|.++...|+|.|+|.|.|..+... ...
T Consensus         9 ~~~~v~~G~~~~l~C~v~g~p~p~-v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~-~~~   86 (92)
T d1epfa2           9 TPQEFKEGEDAVIVCDVVSSLPPT-IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI-NFK   86 (92)
T ss_dssp             SSEECCTTSCEEECCEEECSSCCE-EEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEE-EEE
T ss_pred             CCEEEeCCCcEEEEEEEeecCCCe-EEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEE-EEE
Confidence            345789999999999999998887 99999999987655544333 366899999999999999999999766433 333


Q ss_pred             EEEE
Q psy3823         207 DLNI  210 (365)
Q Consensus       207 ~l~v  210 (365)
                      .+.|
T Consensus        87 ~i~V   90 (92)
T d1epfa2          87 DIQV   90 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.2e-13  Score=95.15  Aligned_cols=88  Identities=17%  Similarity=0.307  Sum_probs=67.6

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCe-EEEEEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGG-LYACSA  194 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~  194 (365)
                      .|.+...+    .+..+.+|+++.|.|.+.|.|.|. +.|++++..+..............|.|.+++..|.| .|+|.|
T Consensus         2 ~P~i~~~~----~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a   76 (92)
T d2ifga1           2 VPTLKVQV----PNASVDVGDDVLLRCQVEGRGLEQ-AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWA   76 (92)
T ss_dssp             CCEEEEEC----CSSCCBTTCCEEEEEEEECSSCCC-CCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECC
T ss_pred             CCEEEEeC----CCEEEeCCCEEEEeeeccCCCCcE-EEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEE
Confidence            36666655    345788999999999999999987 999999877654333223334678999999999998 799999


Q ss_pred             EcCCCCCCcccEEEE
Q psy3823         195 INSQGEGGSTPFDLN  209 (365)
Q Consensus       195 ~~~~~~~~s~~~~l~  209 (365)
                      .|..|... ..+.|.
T Consensus        77 ~N~~G~~~-~s~~l~   90 (92)
T d2ifga1          77 ENDVGRAE-VSVQVN   90 (92)
T ss_dssp             EETTEECC-EEECCC
T ss_pred             EcCCCEEE-EEEEEE
Confidence            99999765 444444

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-12  Score=94.82  Aligned_cols=85  Identities=9%  Similarity=0.005  Sum_probs=64.6

Q ss_pred             eeecCceEEEEEEEeeeC---CCceeEEEeCCCCCCCCC--CceeE------eeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         235 GALRNEQVLVSCTVDANP---QAQYFTWAFNNSDTAPRP--LTSYS------IQDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p---~~~~~~W~~~~~~~~~~~--~~~~~------~~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      .+..|+.++|.|.+.|.|   .|. +.|++++.......  .....      ......+.|.|.+++.+|+|.|+|.|.|
T Consensus        11 ~v~~G~~v~l~C~v~g~p~~~~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   89 (113)
T d2dava1          11 TVKVGEDITFIAKVKAEDLLRKPT-IKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTY   89 (113)
T ss_dssp             EEETTCCEEEEEEEECCCSSSCCE-EEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEEC
T ss_pred             EEeCCCEEEEEEEEccCCCCCCCE-EEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEe
Confidence            388999999999999988   466 99999865322111  11111      1122346799999999999999999999


Q ss_pred             CCccceecEEEEEEcCc
Q psy3823         304 EQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       304 ~~g~~~~~~~l~v~~~~  320 (365)
                      ..|..+..+.|.|..+.
T Consensus        90 ~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          90 KDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             SSCEEEECCEEEEECCC
T ss_pred             CCCEEEEEEEEEEEcCC
Confidence            99999999999997553

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.6e-12  Score=89.11  Aligned_cols=87  Identities=10%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCC-CCceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPR-PLTSYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      +|.+....+..+.+.+|+.+.|.|.+. .|.+ .++|++++.. +.. .........+....|.|.++..+|+|.|+|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~-~v~W~k~g~~-i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a   81 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDA-EVKWLKNGQE-IQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV   81 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSS-CCEEEESSSE-ECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCc-eEEEEEcCcc-ceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEE
Confidence            455555445567789999999999984 5888 9999999998 654 33333444455678999999999999999998


Q ss_pred             EeCCCCCcccEEEEE
Q psy3823          90 RNEQGNQRTPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V  104 (365)
                      .|.    ..++.|.|
T Consensus        82 ~n~----~~s~~l~V   92 (94)
T d1pd6a_          82 GGE----KCSTELFV   92 (94)
T ss_dssp             TTE----EECCEEEE
T ss_pred             eeE----EEEEEEEE
Confidence            653    35566665

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.4e-12  Score=91.17  Aligned_cols=85  Identities=16%  Similarity=0.167  Sum_probs=65.9

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCC-cceEEEEeCCCcCCCCC-Cc--ee-E-ecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQ-AQYFTWAFNNSGTAPRP-LT--SY-S-IQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~-~~~v~W~~~~~~~l~~~-~~--~~-~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      .+....+.+|+++.|.|.+.+.|. | .++|+|++.. +... ..  .. . ........|.|.+++.+|+|.|+|.|.|
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   86 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRP-HVTWCKLNGT-TCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANF   86 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCC-EEEEEEECSS-CEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCC-EEEEEecCcc-cccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEc
Confidence            456678999999999999888884 7 9999999876 4321 11  11 1 1233456799999999999999999999


Q ss_pred             CCCCCc-ccEEEEE
Q psy3823          92 EQGNQR-TPCTFHV  104 (365)
Q Consensus        92 ~~~~~~-~~~~l~V  104 (365)
                      ..|... ..+.|.|
T Consensus        87 ~~G~~~s~~~~l~V  100 (104)
T d2aw2a1          87 QSNLIESHSTTLYV  100 (104)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CCCeEEEEEEEEEE
Confidence            998754 6788887

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.33  E-value=1.7e-12  Score=91.46  Aligned_cols=90  Identities=22%  Similarity=0.465  Sum_probs=64.3

Q ss_pred             CCCceecCccceeeeec---CceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEE
Q psy3823         222 DEPVCKQSQQRIYGALR---NEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      ++|.+...+.... +..   ++.+.|.|.+.|.|.|. +.|+++|..............++  ..|.|..+..+|+|.|+
T Consensus         3 ~~P~f~~~P~~~~-~~~g~~~~~v~l~C~~~g~P~p~-v~W~~ng~~i~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~   78 (97)
T d1cs6a1           3 YGPVFEEQPAHTL-FPEGSAEEKVTLTCRARANPPAT-YRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQ   78 (97)
T ss_dssp             EEEEEEECCCCEE-EETTCSCCEEEECCEEEEESCCE-EEEEETTEECCCSTTSSEEEETT--EEEEESCCHHHHCEEEE
T ss_pred             cCCEEEEeCCCEE-EECccCCCeEEEEEEEEEeCCCE-EEEEEeeeeccCCCCceEEeeee--eEEEEecccccCCEEEE
Confidence            4555554443322 333   47899999999999998 99999987654433333333333  35888889999999999


Q ss_pred             EEEEcCCccc-eecEEEE
Q psy3823         299 CWARNEQGSQ-RTPCTFH  315 (365)
Q Consensus       299 C~a~n~~g~~-~~~~~l~  315 (365)
                      |.|.|..|.. +.++.|.
T Consensus        79 C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          79 CVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEETTEEEECCCEEEE
T ss_pred             EEEEECCCEEEEEEEEEe
Confidence            9999999986 4466664

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.6e-12  Score=91.47  Aligned_cols=86  Identities=8%  Similarity=-0.047  Sum_probs=66.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCCC---CcceEEEEeCCCcCCCCCCc--ee----Ee--cCCeEEEEEEccCCCCCCeEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANP---QAQYFTWAFNNSGTAPRPLT--SY----SI--QDGSTSVARYTPTSELEYGTLL   86 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p---~~~~v~W~~~~~~~l~~~~~--~~----~~--~~~~~~~l~i~~~~~~d~G~Y~   86 (365)
                      .+....+.+|++++|.|.+.+.|   .+ .+.|++++...+.....  ..    ..  .......|.|.+++.+|+|.|+
T Consensus        10 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   88 (110)
T d2avga1          10 RPQDGEVTVGGSITFSARVAGASLLKPP-VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYR   88 (110)
T ss_dssp             CCCCEEEETTSEEEEEEEEECCSCSSSC-EEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEE
T ss_pred             CCCeEEEECCCCEEEEEeecCCCCCCCC-EEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEE
Confidence            35567789999999999988888   46 89999988652322211  11    11  2224568999999999999999


Q ss_pred             EEEEeCCCCCcccEEEEE
Q psy3823          87 CWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        87 C~a~~~~~~~~~~~~l~V  104 (365)
                      |.|.|..|.....+.|.|
T Consensus        89 C~a~N~~G~~~~~~~L~V  106 (110)
T d2avga1          89 CEVSTKDKFDCSNFNLTV  106 (110)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCeEEEEEEEEE
Confidence            999999999999999998

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=9.6e-12  Score=87.52  Aligned_cols=80  Identities=16%  Similarity=0.282  Sum_probs=61.1

Q ss_pred             eecCceEEEEEEEeeeCC-CceeEEEeCCCC-CCCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc-eec
Q psy3823         236 ALRNEQVLVSCTVDANPQ-AQYFTWAFNNSD-TAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ-RTP  311 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~-~~~~~W~~~~~~-~~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~  311 (365)
                      +..|+.+.|.|.+.|.|+ +. +.|+++++. ......+... ......+.|.|.+++.+|+|.|+|.|.|..|.. +.+
T Consensus        12 v~~G~~~~l~C~v~g~p~~~~-v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~t   90 (97)
T d1epfa1          12 ISVGESKFFLCQVAGDAKDKD-ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT   90 (97)
T ss_dssp             EETTCCEEEEEEECCCSCCCE-EEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEE
T ss_pred             EccCCcEEEEEEEEeccCCCE-EEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEE
Confidence            789999999999999885 56 999985542 2232333332 334566789999999999999999999999974 456


Q ss_pred             EEEEE
Q psy3823         312 CTFHV  316 (365)
Q Consensus       312 ~~l~v  316 (365)
                      +.|.|
T Consensus        91 v~l~V   95 (97)
T d1epfa1          91 VNVKI   95 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66665

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.5e-12  Score=87.77  Aligned_cols=89  Identities=10%  Similarity=0.161  Sum_probs=67.3

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +|.+.......+.+.+|+.+.|.|.+. .|++. +.|+++|...........+...+..+.|.|.++..+|+|.|+|.|.
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~-v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAE-VKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSC-CEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCce-EEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            444444444444588999999999984 58887 9999999866554455556666778889999999999999999996


Q ss_pred             cCCccceecEEEEEE
Q psy3823         303 NEQGSQRTPCTFHVV  317 (365)
Q Consensus       303 n~~g~~~~~~~l~v~  317 (365)
                      |.    +.++.|.|.
T Consensus        83 n~----~~s~~l~V~   93 (94)
T d1pd6a_          83 GE----KCSTELFVK   93 (94)
T ss_dssp             TE----EECCEEEEE
T ss_pred             eE----EEEEEEEEE
Confidence            64    455566664

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.2e-12  Score=91.01  Aligned_cols=91  Identities=14%  Similarity=0.209  Sum_probs=70.4

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEe-----cCCeEEEEEEccCCCCCC
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSI-----QDGSTSVARYTPTSELEY   82 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-----~~~~~~~l~i~~~~~~d~   82 (365)
                      |.++|.+...+.    ...++...|.|.+.|+|.+ .++|++++.. +.........     .....+.|.|.+++..|.
T Consensus         1 v~~pP~it~~~~----~~~~~~~~i~~~v~G~P~P-~i~W~~~g~~-l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   74 (103)
T d1wwbx_           1 VHFAPTITFLES----PTSDHHWCIPFTVKGNPKP-ALQWFYNGAI-LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN   74 (103)
T ss_dssp             CCCCCCCCCCCC----CCCCCEEEEEEEEECSSCC-EEEEEETTEE-ECCCSSEEEEEEEECSSEEEEEEEEESCCGGGC
T ss_pred             CccCCeeEEcCC----CccceeEEEEEEEEEeCCC-EEEEEECCEE-eeeeeeeeeeecccccccceEEEEECCCCHHhC
Confidence            346676533221    2367888899998899999 9999999998 7655433211     223456899999999999


Q ss_pred             eEEEEEEEeCCCCCcccEEEEE
Q psy3823          83 GTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        83 G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |.|+|.|.|..|.....+.|.|
T Consensus        75 G~Y~C~a~N~~G~~~~~~~v~V   96 (103)
T d1wwbx_          75 GDYTLIAKNEYGKDEKQISAHF   96 (103)
T ss_dssp             EEEEEEEECSSCEEEEEEEECC
T ss_pred             ceEEEEEeccCCEEEEEEEEEE
Confidence            9999999999999999999988

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.9e-12  Score=88.45  Aligned_cols=92  Identities=12%  Similarity=0.017  Sum_probs=62.7

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEE-eCCCCCCCCCCc-eeEeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWA-FNNSDTAPRPLT-SYSIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~-~~~~~~~~~~~~-~~~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      .|.+.. ... ..+..|+.+.|.|.+.|.|.|. +.|+ .+.......... ...........|.|.++..+|+|.|+|.
T Consensus         2 ~P~f~~-~~~-~~v~~G~~v~l~C~~~g~p~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           2 TPHFLR-IQN-VEVNAGQFATFQCSAIGRTVAG-DRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             SCEECC-CCC-EEECSSSCEEEEEEEESCCCSS-CEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEE
T ss_pred             cCeecc-cCC-EEEeCCCEEEEEEEEeecCCCc-EEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEE
Confidence            355543 222 3489999999999999999886 5443 332222222222 2233344456799999999999999999


Q ss_pred             EEcCCccce-ecEEEEEE
Q psy3823         301 ARNEQGSQR-TPCTFHVV  317 (365)
Q Consensus       301 a~n~~g~~~-~~~~l~v~  317 (365)
                      |.|..|... ..+.|.|+
T Consensus        79 a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          79 IRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCeEEEEEEEEEEC
Confidence            999999864 44677763

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.6e-12  Score=91.21  Aligned_cols=91  Identities=13%  Similarity=0.112  Sum_probs=68.6

Q ss_pred             cccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeE----ecCCeEEEEEEccCCCCCCe
Q psy3823           8 STDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS----IQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus         8 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~----~~~~~~~~l~i~~~~~~d~G   83 (365)
                      |.|+|.+......    ..+....|.|.+.|+|.+ .++|++++.. +........    ......+.|.|.+++.+|+|
T Consensus         2 V~~PP~i~~~~~~----~~~~~~~i~~~v~G~P~P-~v~W~~n~~~-i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   75 (105)
T d1wwca_           2 VYYPPRVVSLEEP----ELRLEHCIEFVVRGNPPP-TLHWLHNGQP-LRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG   75 (105)
T ss_dssp             CCCCCCCCCCCCC----CCCCEEEEEEEEECSSCC-EEEEEETTEE-CCCSSSEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred             EEcCCeeEEeCCC----EEEEEEEEEEEEEEeCCC-eEEEEeCccc-cCCCcceeeeEEeecccceEEEEEeecccccce
Confidence            5677776543221    234456678888899999 9999999998 765544321    12334567999999999999


Q ss_pred             EEEEEEEeCCCCCcccEEEEE
Q psy3823          84 TLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      .|+|.|.|..|....++.|.|
T Consensus        76 ~Y~C~a~N~~G~~~~~~~v~V   96 (105)
T d1wwca_          76 NYTLIAKNPLGTANQTINGHF   96 (105)
T ss_dssp             EEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEEcCCCEEEEEEEEEE
Confidence            999999999999888888888

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.7e-12  Score=88.67  Aligned_cols=74  Identities=12%  Similarity=0.073  Sum_probs=57.8

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-ccE
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-TPC  100 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~~  100 (365)
                      ..+.+|+.++|.|.+.+.+.+..+.|||++.. +.....     ..   .|.|.+++.+|+|.|.|.|.|..+... ..+
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~-~~~~~~-----~~---~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v   80 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEA-LKYWYE-----NH---NISITNATVEDSGTYYCTGKVWQLDYESEPL   80 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEE-CCSCCC-----SS---EEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeec-cccccc-----cc---eEEEeeeeeecCcEEEEEEEeCCCCeEeeeE
Confidence            44789999999999654443349999999987 543221     22   689999999999999999999776543 778


Q ss_pred             EEEE
Q psy3823         101 TFHV  104 (365)
Q Consensus       101 ~l~V  104 (365)
                      .|+|
T Consensus        81 ~i~V   84 (89)
T d1f2qa2          81 NITV   84 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8888

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.8e-12  Score=90.59  Aligned_cols=93  Identities=14%  Similarity=0.198  Sum_probs=69.3

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE--e---eCCCEEEEEEcCCCcccCeE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS--I---QDGSTSVARYTPTSELEYGT  296 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~--~---~~~~~s~l~i~~v~~~d~G~  296 (365)
                      .+|.+.....    ...++...+.|.+.|.|.|. +.|+++|..... ......  .   .....+.|.|.+++.+|+|.
T Consensus         3 ~pP~it~~~~----~~~~~~~~i~~~v~G~P~P~-i~W~~~g~~l~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (103)
T d1wwbx_           3 FAPTITFLES----PTSDHHWCIPFTVKGNPKPA-LQWFYNGAILNE-SKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCCCCCCC----CCCCCEEEEEEEEECSSCCE-EEEEETTEEECC-CSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             cCCeeEEcCC----CccceeEEEEEEEEEeCCCE-EEEEECCEEeee-eeeeeeeecccccccceEEEEECCCCHHhCce
Confidence            6676643221    34578888999999999998 999999875433 222221  1   12234679999999999999


Q ss_pred             EEEEEEcCCccceecEEEEEEcCc
Q psy3823         297 LLCWARNEQGSQRTPCTFHVVKAG  320 (365)
Q Consensus       297 Y~C~a~n~~g~~~~~~~l~v~~~~  320 (365)
                      |+|.|.|..|..+..+.|.|..++
T Consensus        77 Y~C~a~N~~G~~~~~~~v~V~~~P  100 (103)
T d1wwbx_          77 YTLIAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEEEEECSSCEEEEEEEECCSCCC
T ss_pred             EEEEEeccCCEEEEEEEEEEEeCC
Confidence            999999999999998888876543

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.9e-12  Score=91.02  Aligned_cols=93  Identities=15%  Similarity=0.188  Sum_probs=67.9

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCce-eEeeC--CCEEEEEEcCCCcccCeEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTS-YSIQD--GSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~-~~~~~--~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      ++|.+.....    ...+....|.|.+.|.|.|. +.|+++|.......... ....+  ...+.|.|.+++.+|+|.|+
T Consensus         4 ~PP~i~~~~~----~~~~~~~~i~~~v~G~P~P~-v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           4 YPPRVVSLEE----PELRLEHCIEFVVRGNPPPT-LHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCC----CCCCCEEEEEEEEECSSCCE-EEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             cCCeeEEeCC----CEEEEEEEEEEEEEEeCCCe-EEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            6777654322    22445677889999999998 99999987543332211 12222  23467999999999999999


Q ss_pred             EEEEcCCccceecEEEEEEcC
Q psy3823         299 CWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       299 C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      |.|.|..|..+.++.|.|..+
T Consensus        79 C~a~N~~G~~~~~~~v~V~~~   99 (105)
T d1wwca_          79 LIAKNPLGTANQTINGHFLKE   99 (105)
T ss_dssp             EEEEETTEEEEEEEEECCSCC
T ss_pred             EEEEcCCCEEEEEEEEEEEeC
Confidence            999999999999888887533

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.29  E-value=1.2e-12  Score=93.61  Aligned_cols=75  Identities=15%  Similarity=0.209  Sum_probs=58.3

Q ss_pred             CceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCce-eE--ecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          18 QQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTS-YS--IQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~~-~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      .+..+.+.+|+.+.|.|.+ .+.|.+ .+.|++++.. +...... ..  ..++   .|.|.+++.+|+|.|+|.|.|..
T Consensus        10 ~~~~v~v~eG~~~~l~C~~~~~~p~~-~v~W~k~g~~-~~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~   84 (105)
T d1cs6a2          10 ERDPVKITEGWGVMFTCSPPPHYPAL-SYRWLLNEFP-NFIPADGRRFVSQTTG---NLYIAKTEASDLGNYSCFATSHI   84 (105)
T ss_dssp             CCCCEEEETTSCEEECCCCCSEESCC-EEEEEESSTT-CBCCCCSSEEECTTTC---CEEESSCCGGGCEEEEEEEEEEE
T ss_pred             CCCCEEEeCCCeEEEEEEccCCCCCC-EEEEEEeecc-ccccccceeeeecCCC---EEeecccccccCcEEEEEEEECC
Confidence            3456789999999999995 788998 9999999987 5433222 21  2333   79999999999999999999987


Q ss_pred             CCCc
Q psy3823          94 GNQR   97 (365)
Q Consensus        94 ~~~~   97 (365)
                      +...
T Consensus        85 g~~~   88 (105)
T d1cs6a2          85 DFIT   88 (105)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            7644

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.9e-12  Score=88.68  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=62.8

Q ss_pred             eeeecCceEEEEEEEeeeCC-CceeEEEeCCCCCCCCCCc--eeEee--CCCEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         234 YGALRNEQVLVSCTVDANPQ-AQYFTWAFNNSDTAPRPLT--SYSIQ--DGSTSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~-~~~~~W~~~~~~~~~~~~~--~~~~~--~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ..+..|+.+.|.|.+.|.|. |. +.|++++.........  .....  ......|.|.+++.+|+|.|+|.|.|..|..
T Consensus        13 ~~v~~G~~v~L~C~v~g~p~~P~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   91 (104)
T d2aw2a1          13 HSILAGDPFELECPVKYCANRPH-VTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLI   91 (104)
T ss_dssp             EEEETTSCEEEEEEEECSSSCCE-EEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEeCCCeEEEEEEEEeeCCCCE-EEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeE
Confidence            34889999999999999984 77 9999987644322221  11222  2234579999999999999999999999975


Q ss_pred             -eecEEEEEE
Q psy3823         309 -RTPCTFHVV  317 (365)
Q Consensus       309 -~~~~~l~v~  317 (365)
                       +.++.|.|.
T Consensus        92 ~s~~~~l~V~  101 (104)
T d2aw2a1          92 ESHSTTLYVT  101 (104)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             457888775

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.29  E-value=1.8e-12  Score=89.42  Aligned_cols=73  Identities=15%  Similarity=0.134  Sum_probs=57.2

Q ss_pred             EEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-cc
Q psy3823          22 YGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-TP   99 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~   99 (365)
                      ..+.+|+.++|.|.+. +.|.+ .+.|||++.. +..        ......|.|.+++.+|+|.|+|.|.|..+... ..
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~-~~~W~k~g~~-~~~--------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~   79 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLV-KVTFFQNGKS-KKF--------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKP   79 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCE-EEEEEETTEE-EEE--------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CeEecCCeEEEEEEecCCCCCc-EEEEEeeccc-ccc--------cccccccccCccCHHHCCeEEEEEEeCCCCEEeee
Confidence            3478999999999965 44556 9999999876 431        11122799999999999999999999887654 67


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      +.|+|
T Consensus        80 v~l~V   84 (88)
T d2fcba2          80 VTITV   84 (88)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88888

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.6e-12  Score=86.67  Aligned_cols=79  Identities=10%  Similarity=0.196  Sum_probs=59.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      +..+.+.+|+.+.|.|.+.+.|.+.+|+|+|++.. +..........+.   +|.|.+++.+|+|.|+|.|.+..   ..
T Consensus        13 ~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~-l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~---~~   85 (93)
T d1n26a1          13 RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPA-AGSHPSRWAGMGR---RLLLRSVQLHDSGNYSCYRAGRP---AG   85 (93)
T ss_dssp             TTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSS-SSCCCEEEEEESS---EEEECSCCGGGCEEEEEESSSSC---SC
T ss_pred             CCCEEEeCCCcEEEEEEeecCCCCceEEEEEcccc-ccceeeEEecCCC---EEEECCCChhcCEEEEEEECCcc---cc
Confidence            45677889999999999766554328999999988 7655544433444   79999999999999999887533   24


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      ++.|.|
T Consensus        86 t~~l~V   91 (93)
T d1n26a1          86 TVHLLV   91 (93)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            556655

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.3e-12  Score=86.94  Aligned_cols=78  Identities=14%  Similarity=0.062  Sum_probs=60.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC-ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL-TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      .+...+.+|+++.|.|.+.+ |.+ .+.|++++.. +.... ......++   .|.|.+++.+|+|.|+|.|.|..+...
T Consensus         4 ~~~~~~~~G~~~~l~C~~~g-~~~-~v~W~~~g~~-l~~~~~~~~~~~~~---~L~I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1           4 YRQHFFKHGGTAELKCSQKS-NLA-RVFWKFQNGV-LKAESPKYGLMGRK---NLLIFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             EEEEEEETTSCEEECCCCSC-TTC-EEEEEESSSB-CCCCSSSBCCTTTT---CEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             hhheeEeCCCEEEEEEEeec-cCC-ceeeecCccc-ceeeeeeeecceee---EEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence            35678899999999999877 677 9999999988 54433 32333444   699999999999999999999887665


Q ss_pred             ccEEE
Q psy3823          98 TPCTF  102 (365)
Q Consensus        98 ~~~~l  102 (365)
                      ....|
T Consensus        78 ~~~~l   82 (92)
T d1olza1          78 VFQVV   82 (92)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            33333

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.6e-12  Score=92.59  Aligned_cols=88  Identities=9%  Similarity=-0.039  Sum_probs=67.0

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCC---CcceEEEEeCCCcCCCC--CCcee----Ee--cCCeEEEEEEccCCCCCCeEE
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANP---QAQYFTWAFNNSGTAPR--PLTSY----SI--QDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p---~~~~v~W~~~~~~~l~~--~~~~~----~~--~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      .++....+.+|++++|.|.+.+.|   .+ .+.|+|++...+..  .....    ..  .......|.|.+++.+|+|.|
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKP-TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY   83 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCC-EEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCC-EEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEE
Confidence            345667899999999999988888   46 99999987541211  11111    11  223456799999999999999


Q ss_pred             EEEEEeCCCCCcccEEEEEE
Q psy3823          86 LCWARNEQGNQRTPCTFHVV  105 (365)
Q Consensus        86 ~C~a~~~~~~~~~~~~l~V~  105 (365)
                      +|.|.|..|.....+.|.|.
T Consensus        84 ~C~a~N~~G~~~~~~~L~V~  103 (113)
T d2dava1          84 RCEVTYKDKFDSCSFDLEVH  103 (113)
T ss_dssp             EEEEECSSCEEEECCEEEEE
T ss_pred             EEEEEeCCCEEEEEEEEEEE
Confidence            99999999998889999983

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=4.2e-12  Score=91.74  Aligned_cols=83  Identities=13%  Similarity=0.326  Sum_probs=59.8

Q ss_pred             eecCceEEEEEEEe-eeCCCceeEEEeCCCCCCCCCCce-------eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         236 ALRNEQVLVSCTVD-ANPQAQYFTWAFNNSDTAPRPLTS-------YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       236 ~~~g~~~~l~C~~~-~~p~~~~~~W~~~~~~~~~~~~~~-------~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      +..|+.+.|.|.+. |.|.+. +.|++++..........       ........+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        14 v~~G~~v~L~C~~~~g~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          14 VTIGNRAVLTCSEHDGSPPSE-YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EETTSCEEEEEECSCCBSCCE-EEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EecCCeEEEEEEeecCCCCCE-EEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            78899999999985 789998 99999876432221111       1122233446899999999999999999999998


Q ss_pred             cee--cEEEEEEcC
Q psy3823         308 QRT--PCTFHVVKA  319 (365)
Q Consensus       308 ~~~--~~~l~v~~~  319 (365)
                      ...  .+.|+|...
T Consensus        93 ~~~s~~v~l~V~~l  106 (110)
T d1f97a2          93 AMRSEAAHMDAVEL  106 (110)
T ss_dssp             CEECCCEEEEEESS
T ss_pred             EEEEEEEEEEEEec
Confidence            754  556666543

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.27  E-value=1.1e-11  Score=84.56  Aligned_cols=82  Identities=22%  Similarity=0.319  Sum_probs=64.2

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      ..+|.+.+.|.    ...+.+|+.++|.|.+.+.+.+..+.|++++..+..        ...+|.|.++...|+|.|+|.
T Consensus         3 lPkpvi~~~P~----~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~   70 (84)
T d1fnla1           3 LPKAVVFLEPQ----WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------QASSYFIDAATVNDSGEYRCQ   70 (84)
T ss_dssp             CCCCEEEEESC----CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------SCSEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEECCC----CcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee--------cceeeEecCCcccCCEEEEEE
Confidence            45788888773    346899999999999999888875778899887753        235799999999999999999


Q ss_pred             EEcCCCCCCcccEEEEE
Q psy3823         194 AINSQGEGGSTPFDLNI  210 (365)
Q Consensus       194 ~~~~~~~~~s~~~~l~v  210 (365)
                      +.+...   |..+.|.|
T Consensus        71 a~~s~~---S~~v~L~V   84 (84)
T d1fnla1          71 TNLSTL---SDPVQLEV   84 (84)
T ss_dssp             CSSSCC---CCCEEEEE
T ss_pred             ccCCCc---cccEEEEC
Confidence            876433   45566654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.26  E-value=5.9e-12  Score=86.88  Aligned_cols=73  Identities=8%  Similarity=0.094  Sum_probs=56.6

Q ss_pred             EEEecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc-cc
Q psy3823          22 YGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR-TP   99 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~-~~   99 (365)
                      ..+.+|++++|.|.+. +.|.+ .+.||||+.. +..     ...+.   .|.|.+++.+|+|.|+|.|.|..+... ..
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~-~~~W~kng~~-~~~-----~~~~~---~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~   81 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALH-KVTYLQNGKD-RKY-----FHHNS---DFHIPKATLKDSGSYFCRGLVGSKNVSSET   81 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCE-EEEEEETTEE-EEE-----EEECC---CEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CeEccCCeEEEEEEecCCCCCc-EEEEEEcccc-cce-----ecccc---ccEECccceeccceEEEEEEeCCCCeEEee
Confidence            4478999999999965 44555 9999999876 421     11222   688999999999999999999877644 67


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      +.|+|
T Consensus        82 v~itV   86 (89)
T d1fnla2          82 VNITI   86 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88887

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.26  E-value=9.2e-12  Score=88.93  Aligned_cols=78  Identities=13%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             ceeeeecCceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcccee
Q psy3823         232 RIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRT  310 (365)
Q Consensus       232 ~~~~~~~g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~  310 (365)
                      ....+.+|+.+.|.|.+ .+.|.+. +.|+++|.............. .....|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~-v~W~k~g~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   89 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALS-YRWLLNEFPNFIPADGRRFVS-QTTGNLYIAKTEASDLGNYSCFATSHIDFITK   89 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCE-EEEEESSTTCBCCCCSSEEEC-TTTCCEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCE-EEEEEeeccccccccceeeee-cCCCEEeecccccccCcEEEEEEEECCCCEEE
Confidence            33448999999999997 6889998 999999875543332222222 11224999999999999999999999998765


Q ss_pred             c
Q psy3823         311 P  311 (365)
Q Consensus       311 ~  311 (365)
                      +
T Consensus        90 ~   90 (105)
T d1cs6a2          90 S   90 (105)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.6e-12  Score=92.95  Aligned_cols=80  Identities=21%  Similarity=0.418  Sum_probs=59.7

Q ss_pred             eecCceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCCceeE------eeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         236 ALRNEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPLTSYS------IQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       236 ~~~g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~~~~~------~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      +..|+.++|.|.+ .|.|.+. +.|++++............      ......+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus        14 v~~G~~v~l~C~~~~g~p~p~-v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~   92 (104)
T d1nbqa2          14 ATIGNRAVLTCSEQDGSPPSE-YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP   92 (104)
T ss_dssp             EETTSCEEECCCCCSCBSCCE-EEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             EecCCcEEEEEEeecCCCCCE-EEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCce
Confidence            7889999999998 4789998 9999998754332221111      112234569999999999999999999999988


Q ss_pred             eecEEEEE
Q psy3823         309 RTPCTFHV  316 (365)
Q Consensus       309 ~~~~~l~v  316 (365)
                      ..+..+.|
T Consensus        93 ~~s~~v~v  100 (104)
T d1nbqa2          93 MTSNAVRM  100 (104)
T ss_dssp             EECCCBCC
T ss_pred             EEEEEEEE
Confidence            66555444

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.7e-12  Score=86.94  Aligned_cols=80  Identities=14%  Similarity=0.133  Sum_probs=62.4

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc--eeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT--SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ......+.+|+++.|.|.+ +.|.+ .+.|++++.. +.....  .....++....|.|.+++.+|+|.|+|.|.|.   
T Consensus         6 ~l~~~~v~~G~~v~l~C~v-~~p~~-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~---   79 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEV-SEDDA-NVKWFKNGEE-IIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG---   79 (90)
T ss_dssp             CCCCEEEETTEEEEEEEEC-SSSSC-CCEEEETTEE-CCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE---
T ss_pred             CCCCEEEeCCCcEEEEEEE-CCCCc-eEEEEEeecc-cCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc---
Confidence            3456778999999999998 46888 9999999987 544332  33445566778999999999999999998653   


Q ss_pred             CcccEEEEE
Q psy3823          96 QRTPCTFHV  104 (365)
Q Consensus        96 ~~~~~~l~V  104 (365)
                       ..+.+|+|
T Consensus        80 -~~~a~l~V   87 (90)
T d1x44a1          80 -QSSAKLSV   87 (90)
T ss_dssp             -EEEEEEEE
T ss_pred             -eEEEEEEE
Confidence             45666766

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.4e-12  Score=88.36  Aligned_cols=89  Identities=11%  Similarity=0.052  Sum_probs=67.1

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEe-CCCCCcc-eEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTV-DANPQAQ-YFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~-~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      |..+...+....+.+|+.++|.|.+ +++|.+. .++|++++.. +.....   ......+.|.|..+..+|+|.|+|.|
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~-l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A   79 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE-LKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRT   79 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEE-EEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccc-cccccc---ccccceEEEEEeeehhHCCCEEEEEE
Confidence            4444444455568899999999994 5677662 6889999987 543211   13345568999999999999999999


Q ss_pred             EeCCCCCcccEEEEE
Q psy3823          90 RNEQGNQRTPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V  104 (365)
                      .|..+.......+.+
T Consensus        80 ~n~~g~~~~~~~~~~   94 (103)
T d1iama1          80 ELDLRPQGLELFENT   94 (103)
T ss_dssp             EEECGGGTSCEEEEE
T ss_pred             EeCCCCccCeEeeeE
Confidence            999988877778777

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-12  Score=91.22  Aligned_cols=79  Identities=15%  Similarity=0.233  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEE
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSA  194 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  194 (365)
                      .+|.+.+.+    ....+.+|+.+.|.|.+.+.+++..|.|++++..+... .......+.+|.|.+++.+|+|.|+|.+
T Consensus         5 ~~P~~~~~~----~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (93)
T d1n26a1           5 RCPAQEVAR----GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH-PSRWAGMGRRLLLRSVQLHDSGNYSCYR   79 (93)
T ss_dssp             CCCCCCCCT----TEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC-CEEEEEESSEEEECSCCGGGCEEEEEES
T ss_pred             CCCcEEeCC----CCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccce-eeEEecCCCEEEECCCChhcCEEEEEEE
Confidence            345544433    33567889999999999887766559999999887543 2334445788999999999999999998


Q ss_pred             EcCC
Q psy3823         195 INSQ  198 (365)
Q Consensus       195 ~~~~  198 (365)
                      .|..
T Consensus        80 ~n~~   83 (93)
T d1n26a1          80 AGRP   83 (93)
T ss_dssp             SSSC
T ss_pred             CCcc
Confidence            7654

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.7e-12  Score=91.90  Aligned_cols=83  Identities=19%  Similarity=0.268  Sum_probs=66.4

Q ss_pred             CceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCC--ce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          18 QQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPL--TS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~--~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      .+..+.+.+|+.+.|.|.+ .+.|.+ .++|+|++.. +....  .. ....++   +|.|.+++.+|+|.|+|.|.|..
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~-~i~W~k~~~~-~~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~   82 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKG-TITWYKDDSK-TPVSTEQASRIHQHKE---KLWFVPAKVEDSGHYYCVVRNSS   82 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSS-EEEEECSSTT-SBCCCCTTSSEEEETT---EEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCc-eEEEEECCcc-cccccccceEEeccCC---EEEeccceecCCEEEEEEEECCC
Confidence            4566788999999999985 467888 9999999876 43222  21 222334   79999999999999999999999


Q ss_pred             CCCcccEEEEEE
Q psy3823          94 GNQRTPCTFHVV  105 (365)
Q Consensus        94 ~~~~~~~~l~V~  105 (365)
                      |.....+.|+|.
T Consensus        83 g~~~~~~~L~V~   94 (101)
T d1iray1          83 YCLRIKISAKFV   94 (101)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CeEEEEEEEEEE
Confidence            998888999984

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=9.2e-12  Score=86.40  Aligned_cols=74  Identities=12%  Similarity=0.120  Sum_probs=60.0

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCTF  314 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  314 (365)
                      +.+|+++.|.|.+.+ |+|. +.|+++|..............++.   |.|.+++.+|+|.|+|.|.|..|..+....|
T Consensus         9 ~~~G~~~~l~C~~~g-~~~~-v~W~~~g~~l~~~~~~~~~~~~~~---L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l   82 (92)
T d1olza1           9 FKHGGTAELKCSQKS-NLAR-VFWKFQNGVLKAESPKYGLMGRKN---LLIFNLSEGDSGVYQCLSEERVKNKTVFQVV   82 (92)
T ss_dssp             EETTSCEEECCCCSC-TTCE-EEEEESSSBCCCCSSSBCCTTTTC---EEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             EeCCCEEEEEEEeec-cCCc-eeeecCcccceeeeeeeecceeeE---EEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence            889999999999988 6677 999999887655555444444443   9999999999999999999999977655444

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.22  E-value=1.3e-11  Score=84.43  Aligned_cols=81  Identities=19%  Similarity=0.306  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI  195 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  195 (365)
                      +|.+.+.+.    ...+.+|+.++|.|.+.+.+.+..+.|++||..+..        .+..|.|.++..+|+|.|+|.+.
T Consensus         4 kp~i~~~P~----~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~--------~~~~l~i~~v~~~dsG~Y~C~a~   71 (85)
T d2fcba1           4 KAVLKLEPQ----WINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT--------HTQPSYRFKANNNDSGEYTCQTG   71 (85)
T ss_dssp             BCEEEEESC----CSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT--------CCSSEEEEECCGGGCEEEEEECT
T ss_pred             CCEEEECCC----CeEEcCCCeEEEEEEEeeccceeEEEeecccccccc--------cccceEEeeccccCCcEEEEECC
Confidence            566677663    346889999999999999887776899999988753        23579999999999999999987


Q ss_pred             cCCCCCCcccEEEEEe
Q psy3823         196 NSQGEGGSTPFDLNIN  211 (365)
Q Consensus       196 ~~~~~~~s~~~~l~v~  211 (365)
                      |..+   +..+.|+|.
T Consensus        72 ns~~---S~~v~l~V~   84 (85)
T d2fcba1          72 QTSL---SDPVHLTVL   84 (85)
T ss_dssp             TSBC---CCCEEEEEE
T ss_pred             CCcc---cccEEEEEE
Confidence            6533   456677764

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5e-13  Score=97.59  Aligned_cols=96  Identities=16%  Similarity=0.241  Sum_probs=70.0

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC-CceeE----eeCCCEEEEEEcCCCccc-Ce
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP-LTSYS----IQDGSTSVARYTPTSELE-YG  295 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~-~~~~~----~~~~~~s~l~i~~v~~~d-~G  295 (365)
                      .+|.+.... . ..+..|+.+.|.|.+.+.|++..+.|++++....... .+..+    ..++..+.|.|.+++.+| +|
T Consensus         6 ~Pp~i~~~~-~-~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G   83 (115)
T d2crya1           6 GPPIISSTQ-T-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQT   83 (115)
T ss_dssp             SSCCEEEEC-C-CCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHS
T ss_pred             cCCEEecCC-C-EEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCe
Confidence            777765432 2 2378999999999999865543499999887543322 11222    233445789999999999 79


Q ss_pred             EEEEEEEcCCccceecEEEEEEcC
Q psy3823         296 TLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       296 ~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      .|+|.|.|..|.++..+.|.|...
T Consensus        84 ~Y~C~A~N~~G~~~~~~~L~V~~~  107 (115)
T d2crya1          84 IYNCTAWNSFGSDTEIIRLKEQGS  107 (115)
T ss_dssp             CEEEEEECSSCEEEEEECCCCSCS
T ss_pred             EEEEEEEECCCeEEEEEEEEEECC
Confidence            999999999999999888887643

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.22  E-value=4.2e-12  Score=87.70  Aligned_cols=79  Identities=13%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQRT   98 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~~   98 (365)
                      .....+.+|+++.|.|.. +.|.+ .+.|++|+.. +...........+...+|.|.+++.+|+|.|+|.|.|.    ..
T Consensus         8 l~d~~v~~G~~~~~~c~v-s~p~~-~v~W~k~g~~-i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~----~~   80 (89)
T d1tiua_           8 LYGVEVFVGETAHFEIEL-SEPDV-HGQWKLKGQP-LTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA----KS   80 (89)
T ss_dssp             CCCEEEETTSCCCEEEBC-SSSSC-CCBCCSSSCC-CCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC----BC
T ss_pred             CcCEEEeCCCcEEEEEEE-CCCCc-EEEEEEeeee-cccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce----EE
Confidence            356778999999999997 57888 9999999999 76665555555666779999999999999999998653    45


Q ss_pred             cEEEEE
Q psy3823          99 PCTFHV  104 (365)
Q Consensus        99 ~~~l~V  104 (365)
                      ++.|+|
T Consensus        81 sa~l~V   86 (89)
T d1tiua_          81 AANLKV   86 (89)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            677777

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=2.6e-11  Score=86.11  Aligned_cols=91  Identities=18%  Similarity=0.292  Sum_probs=62.6

Q ss_pred             ceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC-CceeE--eeCC----CEEEEEEcCCCcccCeEE
Q psy3823         225 VCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP-LTSYS--IQDG----STSVARYTPTSELEYGTL  297 (365)
Q Consensus       225 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~-~~~~~--~~~~----~~s~l~i~~v~~~d~G~Y  297 (365)
                      .+..+... ..+.+|+++.|.|.+.+.|.|. +.|++++....... .....  ....    ..+.|.|.+++.+|+|.|
T Consensus         3 sV~t~~~~-v~v~~G~~v~l~C~~~g~p~p~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y   80 (102)
T d1f97a1           3 SVYTAQSD-VQVPENESIKLTCTYSGFSSPR-VEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY   80 (102)
T ss_dssp             EEECSCSE-EEEETTCCEEEECEEESCSSEE-EEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             CEEccCCc-EEEeCCCEEEEEEEcCCCCCCe-EEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEE
Confidence            33333333 3388999999999999999998 99998654321100 00000  0000    112599999999999999


Q ss_pred             EEEEEcCCccceecEEEEEE
Q psy3823         298 LCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       298 ~C~a~n~~g~~~~~~~l~v~  317 (365)
                      .|.|.|..|.....+.++|.
T Consensus        81 ~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          81 TCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEEEEEE
Confidence            99999999998877777664

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.3e-11  Score=89.01  Aligned_cols=80  Identities=14%  Similarity=0.312  Sum_probs=60.0

Q ss_pred             EEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCce--------eEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          23 GALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTS--------YSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        23 ~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      .+.+|++++|.|.+ .+.|.+ .++|++++.. +......        ..........|.|.+++.+|+|.|+|.|.|..
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPS-EYSWFKDGIS-MLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCC-EEEEEETTEE-SBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEecCCeEEEEEEeecCCCCC-EEEEEeCCeE-ecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            57899999999995 578999 9999999876 4332211        11122233478999999999999999999999


Q ss_pred             CCCc--ccEEEEE
Q psy3823          94 GNQR--TPCTFHV  104 (365)
Q Consensus        94 ~~~~--~~~~l~V  104 (365)
                      |...  ..+.|.|
T Consensus        91 G~~~~s~~v~l~V  103 (110)
T d1f97a2          91 GTAMRSEAAHMDA  103 (110)
T ss_dssp             SCCEECCCEEEEE
T ss_pred             CcEEEEEEEEEEE
Confidence            8765  5677777

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.6e-11  Score=87.96  Aligned_cols=82  Identities=16%  Similarity=0.208  Sum_probs=63.9

Q ss_pred             EEEEecCCcEEEEE---EeCCCCCcceEEEEeCCCcCCCCCCceeEe-------cCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          21 IYGALRNEQVLVSC---TVDANPQAQYFTWAFNNSGTAPRPLTSYSI-------QDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        21 ~~~v~~G~~~~l~C---~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      .+.+.+|....+.|   .+.|+|.+ .+.|++++.. +.........       .......|.|.++...|.|.|+|.|.
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P-~v~W~~ng~~-l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSV-LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCC-EEEEEETTEE-CCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCC-eEEEEEeeeE-ccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            34455566666555   79999999 9999999998 7655433211       12245679999999999999999999


Q ss_pred             eCCCCCcccEEEEE
Q psy3823          91 NEQGNQRTPCTFHV  104 (365)
Q Consensus        91 ~~~~~~~~~~~l~V  104 (365)
                      |..|.....+.|.|
T Consensus        84 N~~G~~~~~i~v~v   97 (107)
T d1he7a_          84 NPFGQASASIMAAF   97 (107)
T ss_dssp             ETTEEEEEEEEECC
T ss_pred             eCCCEEEEEEEEEE
Confidence            99999888899988

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.5e-11  Score=87.06  Aligned_cols=90  Identities=16%  Similarity=0.233  Sum_probs=68.4

Q ss_pred             CeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeE-----e-------cCCeEEEEEEccCCC
Q psy3823          12 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYS-----I-------QDGSTSVARYTPTSE   79 (365)
Q Consensus        12 p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~-----~-------~~~~~~~l~i~~~~~   79 (365)
                      |.+.......+.+..|+++.|.|.+.++|.+ .+.|++++.. +........     .       .....+.|.|.+++.
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p-~i~W~~~g~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   79 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSV-IDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES   79 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTC-EEEEEETTEE-CCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCC-eEEEEECCcc-cccccceeeeeeeeeccceeeecccceEEEEEeecch
Confidence            4455445556778899999999998899999 9999999987 543332110     0       111345899999999


Q ss_pred             CCCe-EEEEEEEeCCCCCcccEEEE
Q psy3823          80 LEYG-TLLCWARNEQGNQRTPCTFH  103 (365)
Q Consensus        80 ~d~G-~Y~C~a~~~~~~~~~~~~l~  103 (365)
                      .|.| .|+|.|.|..|.....+.|.
T Consensus        80 ~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          80 RFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            9999 59999999999887777765

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7.6e-12  Score=84.92  Aligned_cols=81  Identities=22%  Similarity=0.355  Sum_probs=60.0

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEEEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACSAI  195 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  195 (365)
                      +|.+.+.|..    ..+.+|+.++|.|.+.+.|.+..+.|++++..+..        .+..|.|.+++.+|+|.|.|.+.
T Consensus         1 KP~It~~P~~----~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~v~~~d~G~Y~C~a~   68 (82)
T d1f2qa1           1 KPKVSLNPPW----NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TNSSLNIVNAKFEDSGEYKCQHQ   68 (82)
T ss_dssp             CCCCEEESSC----SEEETTCCEEEECCTTCC----CCEEEETTEECSC--------CSSEEEECSCCGGGCEEEEEECT
T ss_pred             CCEEEEcCCC----eEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec--------ccceeEECCCChhhCCcEEEEec
Confidence            4667777632    46889999999999999888875778899887753        23579999999999999999987


Q ss_pred             cCCCCCCcccEEEEEe
Q psy3823         196 NSQGEGGSTPFDLNIN  211 (365)
Q Consensus       196 ~~~~~~~s~~~~l~v~  211 (365)
                      |..+   +..+.|.|.
T Consensus        69 ~s~~---S~~v~l~V~   81 (82)
T d1f2qa1          69 QVNE---SEPVYLEVF   81 (82)
T ss_dssp             TSSC---CCCEEEEEE
T ss_pred             CCCC---cccEEEEEE
Confidence            6533   456777764

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.2e-11  Score=82.77  Aligned_cols=79  Identities=15%  Similarity=0.225  Sum_probs=61.9

Q ss_pred             eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC-CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      ..+..|+.+.|.|.+ +.|.+. +.|+++|....... ....+..++..+.|.|.+++.+|+|.|+|.|.|.    +.++
T Consensus        10 ~~v~~G~~v~l~C~v-~~p~~~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~a   83 (90)
T d1x44a1          10 TTAYCGERVELECEV-SEDDAN-VKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG----QSSA   83 (90)
T ss_dssp             EEEETTEEEEEEEEC-SSSSCC-CEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE----EEEE
T ss_pred             EEEeCCCcEEEEEEE-CCCCce-EEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc----eEEE
Confidence            348999999999998 468887 99999987554433 3345566777888999999999999999999774    4456


Q ss_pred             EEEEEc
Q psy3823         313 TFHVVK  318 (365)
Q Consensus       313 ~l~v~~  318 (365)
                      .|.|+.
T Consensus        84 ~l~V~~   89 (90)
T d1x44a1          84 KLSVDL   89 (90)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            777653

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.5e-11  Score=85.20  Aligned_cols=91  Identities=13%  Similarity=0.042  Sum_probs=63.5

Q ss_pred             CCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEe-CCCc-CCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          11 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAF-NNSG-TAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        11 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~-~~~~-~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      +|.+.  ......+.+|+++.|.|.+.+.|.+ .+.|++ +... ..................|.|.++..+|+|.|+|.
T Consensus         2 ~P~f~--~~~~~~v~~G~~v~l~C~~~g~p~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           2 TPHFL--RIQNVEVNAGQFATFQCSAIGRTVA-GDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             SCEEC--CCCCEEECSSSCEEEEEEEESCCCS-SCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEE
T ss_pred             cCeec--ccCCEEEeCCCEEEEEEEEeecCCC-cEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEE
Confidence            56664  3566788999999999998888887 554433 2222 02222222223344456899999999999999999


Q ss_pred             EEeCCCCCc-ccEEEEE
Q psy3823          89 ARNEQGNQR-TPCTFHV  104 (365)
Q Consensus        89 a~~~~~~~~-~~~~l~V  104 (365)
                      |.|..|... ....|.|
T Consensus        79 a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          79 IRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEEEE
Confidence            999999765 4467776

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.7e-12  Score=90.18  Aligned_cols=83  Identities=16%  Similarity=0.288  Sum_probs=60.5

Q ss_pred             eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCc-eeEee--CC----CEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLT-SYSIQ--DG----STSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~-~~~~~--~~----~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      ..+.+|+++.|.|.+.|.|.|. +.|++++......... .....  ..    ..+.|.|.+++.+|+|.|+|.|.|..|
T Consensus        14 v~v~~g~~v~L~C~~~g~p~p~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G   92 (105)
T d1nbqa1          14 VRIPENNPVKLSCAYSGFSSPR-VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG   92 (105)
T ss_dssp             CCEETTCCCEEECEEESCSSEE-EEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTS
T ss_pred             EEEeCCCeEEEEEEeCCCCCCe-eEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCC
Confidence            3388999999999999999998 9999976532111100 00000  00    013599999999999999999999999


Q ss_pred             cceecEEEEEE
Q psy3823         307 SQRTPCTFHVV  317 (365)
Q Consensus       307 ~~~~~~~l~v~  317 (365)
                      .....+.|+|.
T Consensus        93 ~~~~~~~v~v~  103 (105)
T d1nbqa1          93 NSYGEVKVKLI  103 (105)
T ss_dssp             SCEECCEEECC
T ss_pred             CEEEEEEEEEE
Confidence            99887777653

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1e-11  Score=88.85  Aligned_cols=85  Identities=15%  Similarity=0.269  Sum_probs=62.1

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce--eEec--CC----eEEEEEEccCCCCCCeEEEEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS--YSIQ--DG----STSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~--~~~~--~~----~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      .+..+.+.+|++++|.|.+.+.|.+ .+.|++++.. +......  ....  ..    ..+.|.|.+++.+|+|.|+|.|
T Consensus        10 ~~~~v~v~~g~~v~L~C~~~g~p~p-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   87 (105)
T d1nbqa1          10 SEPEVRIPENNPVKLSCAYSGFSSP-RVEWKFDQGD-TTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMV   87 (105)
T ss_dssp             SCSBCCEETTCCCEEECEEESCSSE-EEEEEEEETT-EEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEE
T ss_pred             CCCeEEEeCCCeEEEEEEeCCCCCC-eeEEEeeeec-eeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEE
Confidence            3455678999999999998899999 9999998765 3221110  0000  00    1127999999999999999999


Q ss_pred             EeCCCCCcccEEEEE
Q psy3823          90 RNEQGNQRTPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V  104 (365)
                      .|..|.....+.|+|
T Consensus        88 ~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          88 SEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EETTSSCEECCEEEC
T ss_pred             EECCCCEEEEEEEEE
Confidence            999998876555554

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.7e-11  Score=86.71  Aligned_cols=82  Identities=15%  Similarity=0.212  Sum_probs=60.8

Q ss_pred             cCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCcee-Eee-----CCCEEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         238 RNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSY-SIQ-----DGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~-~~~-----~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                      .++...+.|.+.|.|.|. +.|+++|........... ...     ....+.|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus        14 ~~~~~ci~~~v~G~P~P~-v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~   92 (107)
T d1he7a_          14 EMHHWCIPFSVDGQPAPS-LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (107)
T ss_dssp             CCCEEEEEEEECCSSCCE-EEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEEEEEEEecCCe-EEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEE
Confidence            344455666899999998 999999875443222221 111     1234679999999999999999999999999998


Q ss_pred             EEEEEEcCc
Q psy3823         312 CTFHVVKAG  320 (365)
Q Consensus       312 ~~l~v~~~~  320 (365)
                      +.|.|..++
T Consensus        93 i~v~v~~~P  101 (107)
T d1he7a_          93 IMAAFMDNP  101 (107)
T ss_dssp             EEECCCSCT
T ss_pred             EEEEEEcCC
Confidence            888876553

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8.3e-12  Score=89.14  Aligned_cols=81  Identities=21%  Similarity=0.353  Sum_probs=60.6

Q ss_pred             EEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCCCcee-------EecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          22 YGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRPLTSY-------SIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      ..+.+|+.++|.|.+ .++|.+ .+.|++++.. +.......       .......+.|.|.+++.+|.|.|+|.|.|..
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p-~v~W~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   89 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPS-EYTWFKDGIV-MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY   89 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCC-EEEEEETTCC-CCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSS
T ss_pred             CEEecCCcEEEEEEeecCCCCC-EEEEEECCEE-ccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECC
Confidence            457899999999995 589999 9999999987 54332211       1112223478999999999999999999999


Q ss_pred             CCCc--ccEEEEE
Q psy3823          94 GNQR--TPCTFHV  104 (365)
Q Consensus        94 ~~~~--~~~~l~V  104 (365)
                      |...  ..+.|.|
T Consensus        90 G~~~~s~~v~v~v  102 (104)
T d1nbqa2          90 GTPMTSNAVRMEA  102 (104)
T ss_dssp             SCCEECCCBCCEE
T ss_pred             CceEEEEEEEEEE
Confidence            9875  4455544

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.4e-11  Score=85.88  Aligned_cols=85  Identities=19%  Similarity=0.244  Sum_probs=65.9

Q ss_pred             eeeecCceEEEEEEEe-eeCCCceeEEEeCCCCCCCCC-CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         234 YGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSDTAPRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~-~~p~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                      +.+.+|+.+.|.|.+. +.|.+. +.|+++|....... ...++...+.  .|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus        12 ~~~~~~e~~~l~C~~~~~~~~~~-i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1          12 LVSSANEIDVRPCPLNPNEHKGT-ITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             EEEETTSCEEECCCCCGGGCSSE-EEEECSSTTSBCCCCTTSSEEEETT--EEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEeCCCeEEEEeeCCCCCCCce-EEEEECCcccccccccceEEeccCC--EEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            3377899999999885 567787 99999886443222 2222333332  59999999999999999999999999999


Q ss_pred             EEEEEEcCcc
Q psy3823         312 CTFHVVKAGE  321 (365)
Q Consensus       312 ~~l~v~~~~~  321 (365)
                      +.|.|....+
T Consensus        89 ~~L~V~~~~p   98 (101)
T d1iray1          89 ISAKFVENEP   98 (101)
T ss_dssp             EEEEEECCCT
T ss_pred             EEEEEEeCCC
Confidence            9999986543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6e-11  Score=84.08  Aligned_cols=91  Identities=12%  Similarity=0.177  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCC-eeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEE
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYK-KLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~-~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  192 (365)
                      .||.+.+.+..    ..+.+|+.++|.|.+.| +|.+. .+.|++++..+...... .......|.|.....+|+|.|+|
T Consensus         3 ~P~~v~i~p~~----~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~-~~~~~s~l~i~~~~~dd~g~ytC   77 (103)
T d1iama1           3 TPERVELAPLP----SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV-GEPAEVTTTVLVRRDHHGAQFSC   77 (103)
T ss_dssp             CCSEEEECCCC----SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC-TTTEEEEEEEECCSSCSSCEEEE
T ss_pred             CCCceEEeCCC----ceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc-cccceEEEEEeeehhHCCCEEEE
Confidence            46666666533    45789999999999996 45443 47899999988643221 11224579999999999999999


Q ss_pred             EEEcCCCCCCcccEEEEEe
Q psy3823         193 SAINSQGEGGSTPFDLNIN  211 (365)
Q Consensus       193 ~~~~~~~~~~s~~~~l~v~  211 (365)
                      +|.|..|... ..+.+.+.
T Consensus        78 ~A~n~~g~~~-~~~~~~~s   95 (103)
T d1iama1          78 RTELDLRPQG-LELFENTS   95 (103)
T ss_dssp             EEEEECGGGT-SCEEEEEC
T ss_pred             EEEeCCCCcc-CeEeeeEc
Confidence            9999988554 45566665

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=5.4e-11  Score=84.41  Aligned_cols=81  Identities=15%  Similarity=0.316  Sum_probs=60.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCC-----------ceeEecCCeEEEEEEccCCCCCCeEEEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPL-----------TSYSIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~-----------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      +....+.+|++++|.|...+.|.+ .+.|++++.. .....           ......+.   +|.|.+++.+|.|.|+|
T Consensus         8 ~~~v~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---tL~I~~v~~~D~G~Y~C   82 (102)
T d1f97a1           8 QSDVQVPENESIKLTCTYSGFSSP-RVEWKFVQGS-TTALVCYNSQITAPYADRVTFSSS---GITFSSVTRKDNGEYTC   82 (102)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSE-EEEEEEEETT-EEEEEEETTEECGGGTTTEEEETT---EEEESCCCGGGCEEEEE
T ss_pred             CCcEEEeCCCEEEEEEEcCCCCCC-eEEEEecccc-ceeeeccccccccceeeEEEecCC---EEEEeECCccCCEEEEE
Confidence            445778999999999998889999 9999997654 21110           00111222   69999999999999999


Q ss_pred             EEEeCCCCCcccEEEEE
Q psy3823          88 WARNEQGNQRTPCTFHV  104 (365)
Q Consensus        88 ~a~~~~~~~~~~~~l~V  104 (365)
                      .|.|..|.....+.|.|
T Consensus        83 ~a~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          83 MVSEEGGQNYGEVSIHL   99 (102)
T ss_dssp             EEEETTSSSEEEEEEEE
T ss_pred             EEEECCCCEEEEEEEEE
Confidence            99999998775555544

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.7e-11  Score=83.95  Aligned_cols=71  Identities=11%  Similarity=0.026  Sum_probs=57.5

Q ss_pred             EEEecCCcEEEEE------EeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          22 YGALRNEQVLVSC------TVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        22 ~~v~~G~~~~l~C------~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      -.+..|+...|.|      .+.++|.| .+.|++++.. +..........++   .|.|.+++.+|+|.|+|.|.|..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P-~i~W~kdg~~-l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELP-KLQWYKDCKP-LLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCC-CCEEEETTEE-CCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCC-EEEEEECCcc-ccCCCcEEEecCC---EEEEcccccccCcEEEEEEEECcCC
Confidence            3467899999999      56788999 9999999998 7655443444445   7999999999999999999987765


Q ss_pred             Cc
Q psy3823          96 QR   97 (365)
Q Consensus        96 ~~   97 (365)
                      ..
T Consensus        84 ~~   85 (103)
T d1iray2          84 KQ   85 (103)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.13  E-value=4.3e-11  Score=81.71  Aligned_cols=75  Identities=15%  Similarity=0.282  Sum_probs=57.9

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .++....+.+|+.++|.|.+.++|.+..+.|++++.. +....       .   .|.|.+++.+|+|.|+|.+.+..+  
T Consensus         9 ~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~-~~~~~-------~---~l~i~~v~~~dsG~Y~C~a~ns~~--   75 (85)
T d2fcba1           9 LEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNL-IPTHT-------Q---PSYRFKANNNDSGEYTCQTGQTSL--   75 (85)
T ss_dssp             EESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEE-CTTCC-------S---SEEEEECCGGGCEEEEEECTTSBC--
T ss_pred             ECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccc-ccccc-------c---ceEEeeccccCCcEEEEECCCCcc--
Confidence            3445567889999999999878877657999999987 54322       2   588899999999999999876533  


Q ss_pred             cccEEEEE
Q psy3823          97 RTPCTFHV  104 (365)
Q Consensus        97 ~~~~~l~V  104 (365)
                      ...+.|+|
T Consensus        76 S~~v~l~V   83 (85)
T d2fcba1          76 SDPVHLTV   83 (85)
T ss_dssp             CCCEEEEE
T ss_pred             cccEEEEE
Confidence            35677776

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.13  E-value=5.3e-11  Score=81.03  Aligned_cols=77  Identities=17%  Similarity=0.252  Sum_probs=57.1

Q ss_pred             eeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          15 KQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        15 ~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ...++....+.+|++++|.|.+.+.|.+..+.|++++.. +..       ...   .|.|.+++.+|+|.|+|.|.+.. 
T Consensus         8 i~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~-~~~-------~~~---~l~i~~~~~~d~G~Y~C~a~~s~-   75 (84)
T d1fnla1           8 VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESL-ISS-------QAS---SYFIDAATVNDSGEYRCQTNLST-   75 (84)
T ss_dssp             EEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEE-EES-------SCS---EEEESSCCGGGCEEEEEECSSSC-
T ss_pred             EEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeecee-eee-------cce---eeEecCCcccCCEEEEEEccCCC-
Confidence            334455567889999999999888888756777888776 432       222   79999999999999999987643 


Q ss_pred             CCcccEEEEE
Q psy3823          95 NQRTPCTFHV  104 (365)
Q Consensus        95 ~~~~~~~l~V  104 (365)
                       .+..+.|+|
T Consensus        76 -~S~~v~L~V   84 (84)
T d1fnla1          76 -LSDPVQLEV   84 (84)
T ss_dssp             -CCCCEEEEE
T ss_pred             -ccccEEEEC
Confidence             235566654

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.4e-11  Score=81.60  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=53.8

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      ++....+.+|+.++|.|.+.++|.+..+.|++++.. +....       .   .|.|.+++.+|+|.|+|.|.+..  ..
T Consensus         7 ~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~-~~~~~-------~---~l~i~~v~~~d~G~Y~C~a~~s~--~S   73 (82)
T d1f2qa1           7 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSL-SEETN-------S---SLNIVNAKFEDSGEYKCQHQQVN--ES   73 (82)
T ss_dssp             ESSCSEEETTCCEEEECCTTCC----CCEEEETTEE-CSCCS-------S---EEEECSCCGGGCEEEEEECTTSS--CC
T ss_pred             cCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeee-eeccc-------c---eeEECCCChhhCCcEEEEecCCC--Cc
Confidence            344456789999999999888888756777888877 54322       2   69999999999999999987643  33


Q ss_pred             ccEEEEE
Q psy3823          98 TPCTFHV  104 (365)
Q Consensus        98 ~~~~l~V  104 (365)
                      ..+.|+|
T Consensus        74 ~~v~l~V   80 (82)
T d1f2qa1          74 EPVYLEV   80 (82)
T ss_dssp             CCEEEEE
T ss_pred             ccEEEEE
Confidence            5677777

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.11  E-value=1.7e-11  Score=84.54  Aligned_cols=77  Identities=13%  Similarity=0.163  Sum_probs=61.7

Q ss_pred             eeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      ..+.+|+++.|.|.+ +.|.|. +.|+++|... ....+..+..++..+.|.|.+++.+|+|.|+|.|.|..    .++.
T Consensus        11 ~~v~~G~~~~~~c~v-s~p~~~-v~W~k~g~~i-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~----~sa~   83 (89)
T d1tiua_          11 VEVFVGETAHFEIEL-SEPDVH-GQWKLKGQPL-TASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK----SAAN   83 (89)
T ss_dssp             EEEETTSCCCEEEBC-SSSSCC-CBCCSSSCCC-CSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB----CCEE
T ss_pred             EEEeCCCcEEEEEEE-CCCCcE-EEEEEeeeec-ccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE----EEEE
Confidence            338999999999997 578887 9999998754 34455666677788899999999999999999997754    4456


Q ss_pred             EEEE
Q psy3823         314 FHVV  317 (365)
Q Consensus       314 l~v~  317 (365)
                      |.|.
T Consensus        84 l~V~   87 (89)
T d1tiua_          84 LKVK   87 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6664

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.6e-11  Score=85.80  Aligned_cols=85  Identities=11%  Similarity=-0.015  Sum_probs=60.9

Q ss_pred             ceEEEEecCCcEEEEEEeC-CCCCc-ceEEEEeCCCcCCCCCCcee--EecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVD-ANPQA-QYFTWAFNNSGTAPRPLTSY--SIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~-~~p~~-~~v~W~~~~~~~l~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      .....+.+|+.++|.|.+. ++|.+ ..++|++++.. +.......  .......+.|.+.....+|.|.|+|.|.|..+
T Consensus         9 ~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~-i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1           9 LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNET-LHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             EESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEE-EEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred             CCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEE-eeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCC
Confidence            3444578999999999954 45433 28999999987 54322211  11333456788888889999999999999988


Q ss_pred             CCcccEEEEE
Q psy3823          95 NQRTPCTFHV  104 (365)
Q Consensus        95 ~~~~~~~l~V  104 (365)
                      .....+.+.+
T Consensus        88 ~~~~~~~~~~   97 (106)
T d1zxqa1          88 SRGGNIFHKH   97 (106)
T ss_dssp             GGTCCEEEEE
T ss_pred             CCCCeeEecc
Confidence            7666677666

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.4e-12  Score=92.45  Aligned_cols=96  Identities=15%  Similarity=0.259  Sum_probs=71.7

Q ss_pred             eecccCCeEeeCCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCc--ee----EecCCeEEEEEEccCCC
Q psy3823           6 FNSTDEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLT--SY----SIQDGSTSVARYTPTSE   79 (365)
Q Consensus         6 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~--~~----~~~~~~~~~l~i~~~~~   79 (365)
                      +.|.++|.+..  .....+.+|+.+.|.|.+.+.|++..+.|++++.. +.....  ..    ...++..+.|.|.++..
T Consensus         2 L~V~~Pp~i~~--~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~-i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~   78 (115)
T d2crya1           2 LTVNGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENV-LESGTSGRYTVETISTEEGVISTLTISNIVR   78 (115)
T ss_dssp             CCCCSSCCEEE--ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCE-ECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             eEEecCCEEec--CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeee-EeeeeeeeEeeeeeccccCcEEEEEEeccch
Confidence            45667787643  33455789999999999777544338999999987 543321  11    12344556899999999


Q ss_pred             CC-CeEEEEEEEeCCCCCcccEEEEE
Q psy3823          80 LE-YGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        80 ~d-~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      .| +|.|+|.|.|..|.....+.|.|
T Consensus        79 ~D~~G~Y~C~A~N~~G~~~~~~~L~V  104 (115)
T d2crya1          79 ADFQTIYNCTAWNSFGSDTEIIRLKE  104 (115)
T ss_dssp             HHHHSCEEEEEECSSCEEEEEECCCC
T ss_pred             hcCCeEEEEEEEECCCeEEEEEEEEE
Confidence            99 69999999999999888888888

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.8e-10  Score=79.08  Aligned_cols=68  Identities=12%  Similarity=0.062  Sum_probs=53.3

Q ss_pred             eecCceEEEEE------EEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         236 ALRNEQVLVSC------TVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       236 ~~~g~~~~l~C------~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      +..|....|.|      ...+.|.|. +.|+++|...... .......++   .|.|.++..+|+|.|+|.|.|..|..
T Consensus        11 ~~~g~~~~l~Cp~~~~~~~~~~p~P~-i~W~kdg~~l~~~-~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2          11 LPVAGDGGLVCPYMEFFKNENNELPK-LQWYKDCKPLLLD-NIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EESSSCEEEECTTGGGGCBTTTBCCC-CEEEETTEECCCC-SSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EecCCCEEEEcCCccccccCCCCCCE-EEEEECCccccCC-CcEEEecCC---EEEEcccccccCcEEEEEEEECcCCE
Confidence            77899999999      567889998 9999998755432 222223333   49999999999999999999988754

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.94  E-value=3.2e-10  Score=81.38  Aligned_cols=78  Identities=17%  Similarity=0.269  Sum_probs=57.9

Q ss_pred             eecCceEEEEEEE-eeeCCCceeEEEeCCCCCCCCCC------ceeEeeCCCEEEEEEcCCCcccCe---EEEEEEEcCC
Q psy3823         236 ALRNEQVLVSCTV-DANPQAQYFTWAFNNSDTAPRPL------TSYSIQDGSTSVARYTPTSELEYG---TLLCWARNEQ  305 (365)
Q Consensus       236 ~~~g~~~~l~C~~-~~~p~~~~~~W~~~~~~~~~~~~------~~~~~~~~~~s~l~i~~v~~~d~G---~Y~C~a~n~~  305 (365)
                      +.+|+.+.|.|.+ .|.|.|. +.|++++........      ......++   .|.|.+++.+|+|   .|.|.|.|..
T Consensus        14 ~~EG~~~~L~C~v~~G~P~p~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          14 PIEGRPFQLDCVLPNAYPKPL-ITWKKRLSGADPNADVTDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             CBTTEEEEECCCCCEEESCCE-EEEEEEETTSCGGGCCCCCCTTEEECTTS---CEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             ccCCCeEEEEEEcccCCCCCE-EEEEeCCccccccccceeeeeeecccccc---ccEEeeeEeeccCCceEEEEEEEeCC
Confidence            6789999999997 8999998 999998765432111      11122233   3889999988877   7999999999


Q ss_pred             ccceecEEEEEE
Q psy3823         306 GSQRTPCTFHVV  317 (365)
Q Consensus       306 g~~~~~~~l~v~  317 (365)
                      |.....+.+.+.
T Consensus        90 g~~~~~~~~~~i  101 (111)
T d1biha2          90 VDEEVVLVEYEI  101 (111)
T ss_dssp             CSSCEEEEEEEE
T ss_pred             CCceEEEEEEEe
Confidence            998776655444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.93  E-value=3e-10  Score=81.54  Aligned_cols=80  Identities=18%  Similarity=0.233  Sum_probs=58.9

Q ss_pred             eEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcCCCCC-Cc------eeEecCCeEEEEEEccCCCCCCe---EEEEE
Q psy3823          20 RIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGTAPRP-LT------SYSIQDGSTSVARYTPTSELEYG---TLLCW   88 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~l~~~-~~------~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~   88 (365)
                      ....+.||+++.|.|.+ .+.|.+ .+.|+|++.. +... ..      .....++   +|.|.+++..|+|   .|+|.
T Consensus        10 ~~~t~~EG~~~~L~C~v~~G~P~p-~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~gd~g~Y~C~   84 (111)
T d1biha2          10 HEKTPIEGRPFQLDCVLPNAYPKP-LITWKKRLSG-ADPNADVTDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYVCT   84 (111)
T ss_dssp             EEECCBTTEEEEECCCCCEEESCC-EEEEEEEETT-SCGGGCCCCCCTTEEECTTS---CEEEEEECGGGCCSSEEEEEE
T ss_pred             ccccccCCCeEEEEEEcccCCCCC-EEEEEeCCcc-ccccccceeeeeeecccccc---ccEEeeeEeeccCCceEEEEE
Confidence            34457899999999995 799999 9999999776 3221 11      1122344   6889999888766   89999


Q ss_pred             EEeCCCCCcccEEEEE
Q psy3823          89 ARNEQGNQRTPCTFHV  104 (365)
Q Consensus        89 a~~~~~~~~~~~~l~V  104 (365)
                      |.|..|.....+.+.+
T Consensus        85 A~N~~g~~~~~~~~~~  100 (111)
T d1biha2          85 AKNAAVDEEVVLVEYE  100 (111)
T ss_dssp             EECTTCSSCEEEEEEE
T ss_pred             EEeCCCCceEEEEEEE
Confidence            9999998875554444

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.3e-10  Score=80.66  Aligned_cols=81  Identities=12%  Similarity=0.056  Sum_probs=55.6

Q ss_pred             eecCceEEEEEEEee-eCCCc-eeEEEeCCCCCCCCCCce-eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCccceecE
Q psy3823         236 ALRNEQVLVSCTVDA-NPQAQ-YFTWAFNNSDTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGSQRTPC  312 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~-~p~~~-~~~W~~~~~~~~~~~~~~-~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  312 (365)
                      +..|+.++|.|.+.| .|.|. .+.|++++.......... ........+.|.+.....+|+|.|+|.|.|..|.....+
T Consensus        14 v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~   93 (106)
T d1zxqa1          14 VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNI   93 (106)
T ss_dssp             ECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTCCE
T ss_pred             EeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCCee
Confidence            789999999999986 44443 499999876432111000 011223356788888888889999999999998776555


Q ss_pred             EEEE
Q psy3823         313 TFHV  316 (365)
Q Consensus       313 ~l~v  316 (365)
                      .+.+
T Consensus        94 ~~~~   97 (106)
T d1zxqa1          94 FHKH   97 (106)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            5544

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=7.7e-09  Score=72.16  Aligned_cols=80  Identities=6%  Similarity=0.039  Sum_probs=56.5

Q ss_pred             EEEEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCC---C-------CceeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          21 IYGALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPR---P-------LTSYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~---~-------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      .+....|++|+|.|. .........+.|++++.. +..   .       .......++   +|.|.+++.+|+|.|+|.+
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~-i~~~~~~~~~~~~~~~~~~~~ng---SL~I~nl~~~DsG~Y~c~v   79 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTL-VAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTV   79 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEE-EEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccc-eeEEccCCccccCCCeEEECCCc---cEEEeCCCHHHCEEEEEEE
Confidence            345678999999997 333333238999998765 321   1       111222344   7999999999999999999


Q ss_pred             EeCCCCCc--ccEEEEE
Q psy3823          90 RNEQGNQR--TPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~--~~~~l~V  104 (365)
                      .+..|...  .++.|.|
T Consensus        80 ~~~~g~~~~~~~~~L~V   96 (98)
T d1hnga1          80 YSTNGTRILNKALDLRI   96 (98)
T ss_dssp             EETTCCEEEEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEEEE
Confidence            99888764  6777777

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.8e-09  Score=74.80  Aligned_cols=80  Identities=8%  Similarity=-0.050  Sum_probs=54.6

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCC-Cc---------eeEecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRP-LT---------SYSIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~-~~---------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      ..+....|++++|.|.. +.|.+ .+.|++++.. +... ..         .....+....+|+|.+++.+|+|.|+|.+
T Consensus         3 ~~v~~~~G~sVtl~c~~-~~p~~-~v~W~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~   79 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPS-NVPLK-EVLWKKQKDK-VAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES   79 (93)
T ss_dssp             EEEEEETTCCEEECCCC-SSCCS-CEEEEETTEE-EEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEEC
T ss_pred             cEEEEEECCCEEEEecC-CCCCc-EEEEEEeccc-cceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEE
Confidence            34567899999999986 45888 9999998865 3210 00         01111122347999999999999999998


Q ss_pred             EeCCCCCcccEEEEE
Q psy3823          90 RNEQGNQRTPCTFHV  104 (365)
Q Consensus        90 ~~~~~~~~~~~~l~V  104 (365)
                      .+..+  ...+.|+|
T Consensus        80 ~n~~~--t~~~~l~V   92 (93)
T d1ccza1          80 PNITD--TMKFFLYV   92 (93)
T ss_dssp             TTCCS--CEEEEEEE
T ss_pred             ECCCc--EEEEEEEE
Confidence            76543  34466655

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=3.2e-08  Score=72.55  Aligned_cols=85  Identities=12%  Similarity=0.155  Sum_probs=58.0

Q ss_pred             eeecCceEEEEEEEeeeCCC--ceeEEEeCCCCCCC----------------CCCceeEe---eCCCEEEEEEcCCCccc
Q psy3823         235 GALRNEQVLVSCTVDANPQA--QYFTWAFNNSDTAP----------------RPLTSYSI---QDGSTSVARYTPTSELE  293 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~--~~~~W~~~~~~~~~----------------~~~~~~~~---~~~~~s~l~i~~v~~~d  293 (365)
                      .+..|++++|.|.+......  ..+.|++.+.....                ...+..+.   .......|.|.+++.+|
T Consensus        13 ~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   92 (126)
T d1pkoa_          13 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSD   92 (126)
T ss_dssp             EEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGG
T ss_pred             EEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhH
Confidence            37899999999998643222  25899986532100                00011111   12235679999999999


Q ss_pred             CeEEEEEEEcCCccceecEEEEEEcC
Q psy3823         294 YGTLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       294 ~G~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      +|.|.|.+.+..+..+..+.|.|..+
T Consensus        93 ~G~Y~C~v~~~~~~~~~~v~L~V~~P  118 (126)
T d1pkoa_          93 EGGYTCFFRDHSYQEEAAVELKVEDP  118 (126)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred             CeEEEEEEEECCCEEEEEEEEEEeCC
Confidence            99999999999998888888888754

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=9.4e-08  Score=69.93  Aligned_cols=85  Identities=12%  Similarity=0.167  Sum_probs=56.5

Q ss_pred             eEEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCcCC----------C----CC--CceeEe---cCCeEEEEEEccCC
Q psy3823          20 RIYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSGTA----------P----RP--LTSYSI---QDGSTSVARYTPTS   78 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~~l----------~----~~--~~~~~~---~~~~~~~l~i~~~~   78 (365)
                      ..+.+.+|++++|.|....  .+....+.|++.+....          .    ..  .+....   ......+|.|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            3467889999999998432  22223799998753200          0    00  000111   11235689999999


Q ss_pred             CCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          79 ELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      .+|+|.|.|.+.+..+.....+.|.|
T Consensus        90 ~~D~G~Y~C~v~~~~~~~~~~v~L~V  115 (126)
T d1pkoa_          90 FSDEGGYTCFFRDHSYQEEAAVELKV  115 (126)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             hhHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999988777778888888

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=1.9e-08  Score=71.26  Aligned_cols=78  Identities=14%  Similarity=0.152  Sum_probs=52.9

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCC--------C-------C---CceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAP--------R-------P---LTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~--------~-------~---~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      .+.+|++++|.|........ .+.|+|+......        .       +   .+.....++   +|.|.+++.+|+|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~-~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng---SL~I~~v~~~D~G~   85 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALG-AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG---SLLFQMITMKDMGV   85 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCS-EEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS---CEEECSCCGGGCEE
T ss_pred             cccCCCCEEEEecCCCCCce-EEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc---cEEEcCCCchhCEE
Confidence            46799999999983333344 8999996543110        0       0   011222444   79999999999999


Q ss_pred             EEEEEEeCCCC-CcccEEEEE
Q psy3823          85 LLCWARNEQGN-QRTPCTFHV  104 (365)
Q Consensus        85 Y~C~a~~~~~~-~~~~~~l~V  104 (365)
                      |+|.+.+..+. ....+.|.|
T Consensus        86 Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          86 YTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            99999876643 446777765

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.64  E-value=1.8e-08  Score=70.25  Aligned_cols=81  Identities=20%  Similarity=0.291  Sum_probs=57.5

Q ss_pred             ceecCCcEEEEEEE-EecCCCCeeEEEeCCeEEeeCC---------CCceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         131 VLNEGVDIYFDCHI-QANPPYKKLIWTHNGITISNNA---------SAGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       131 ~~~~g~~v~l~C~~-~~~p~~~~i~W~~~~~~l~~~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      ....|++|+|.|.. ........|.|++++..+....         .......+++|.|.+++..|+|.|+|++.+..|.
T Consensus         6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~   85 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT   85 (98)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCC
Confidence            45679999999953 2333334599999988774211         1112334678999999999999999999998886


Q ss_pred             C-CcccEEEEEe
Q psy3823         201 G-GSTPFDLNIN  211 (365)
Q Consensus       201 ~-~s~~~~l~v~  211 (365)
                      . ..+.+.|.|.
T Consensus        86 ~~~~~~~~L~V~   97 (98)
T d1hnga1          86 RILNKALDLRIL   97 (98)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            4 3456677764

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=9.4e-09  Score=71.08  Aligned_cols=78  Identities=9%  Similarity=0.008  Sum_probs=53.2

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-CC--------ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-PL--------TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-~~--------~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      ....|++++|.|... .|.+. +.|++++...... ..        ..+...+.....|.|.+++.+|+|.|+|.+.|..
T Consensus         6 ~~~~G~sVtl~c~~~-~p~~~-v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~   83 (93)
T d1ccza1           6 YGVVYGNVTFHVPSN-VPLKE-VLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (93)
T ss_dssp             EEETTCCEEECCCCS-SCCSC-EEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEECCCEEEEecCC-CCCcE-EEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCC
Confidence            378899999999864 57776 9999976432100 00        0011222233459999999999999999999987


Q ss_pred             ccceecEEEEE
Q psy3823         306 GSQRTPCTFHV  316 (365)
Q Consensus       306 g~~~~~~~l~v  316 (365)
                      ++.+  +.|.|
T Consensus        84 ~t~~--~~l~V   92 (93)
T d1ccza1          84 DTMK--FFLYV   92 (93)
T ss_dssp             SCEE--EEEEE
T ss_pred             cEEE--EEEEE
Confidence            7654  45554

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.2e-07  Score=62.51  Aligned_cols=90  Identities=12%  Similarity=0.141  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCC-ceEEeeceEEEeeecCCCCeEEEEE
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASA-GRIITNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      .+|.+...+..     .+..|++|+|.|...  .....+.|+++|......... ........+.|.+++..|+|.|+|.
T Consensus         3 PKPsLsa~P~~-----~V~~G~~VTL~C~~~--~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~   75 (95)
T d1olla1           3 PKPFIWAEPHF-----MVPKEKQVTICCQGN--YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI   75 (95)
T ss_dssp             CCCEEEEESCS-----EEETTCCEEEEEECC--TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeeCCC-----cccCCCcEEEEEecC--CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEE
Confidence            47888877643     578999999999864  333448889988654321111 0111234799999999999999999


Q ss_pred             EEcCCC-CCCcccEEEEEe
Q psy3823         194 AINSQG-EGGSTPFDLNIN  211 (365)
Q Consensus       194 ~~~~~~-~~~s~~~~l~v~  211 (365)
                      ..+... ...|+.+.|.|.
T Consensus        76 y~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          76 YRVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             EEETTEECCCCCCEEEEEE
T ss_pred             eCCCCCccCCCCCEEEEEe
Confidence            887644 345567777664

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.54  E-value=6.6e-07  Score=63.45  Aligned_cols=86  Identities=10%  Similarity=0.144  Sum_probs=55.1

Q ss_pred             CceEEEEecCCcEEEEEEeCC-CCCcceEEEEeCCCcC-C----C--------CCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823          18 QQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGT-A----P--------RPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~-l----~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      |+..+.+.+|++++|.|.... .... .+.||+..... .    .        .........+.....|.|.+++.+|+|
T Consensus         4 QP~svsv~~G~~vtl~C~~s~~~~~~-~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   82 (110)
T d2esvd1           4 QPPSMDCAEGRAANLPCNHSTISGNE-YVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTA   82 (110)
T ss_dssp             CCSEEEEETTSCEEEEEECTTCCTTE-EEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCE
T ss_pred             cCCEEEECCCCCEEEEEEEcCCCCCC-eEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCce
Confidence            456788999999999998433 3445 78999843210 0    0        000111223446678999999999999


Q ss_pred             EEEEEEEeCCCCCc----ccEEEEE
Q psy3823          84 TLLCWARNEQGNQR----TPCTFHV  104 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~----~~~~l~V  104 (365)
                      .|.|.+....+...    .-..|+|
T Consensus        83 ~YyCa~~~~~~~~~~~FG~GT~L~V  107 (110)
T d2esvd1          83 VYYCIVVRSSNTGKLIFGQGTTLQV  107 (110)
T ss_dssp             EEEEEEEESCSSCCCCCCCCEEEEE
T ss_pred             EEEEEEeCCCCCCccEECCCEEEEE
Confidence            99998865433222    3345666

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.5e-07  Score=68.59  Aligned_cols=84  Identities=14%  Similarity=0.233  Sum_probs=57.0

Q ss_pred             eeeecCceEEEEEEEeeeCCCc---eeEEEeCCCCCCCCC--------------------CceeEee---CCCEEEEEEc
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQ---YFTWAFNNSDTAPRP--------------------LTSYSIQ---DGSTSVARYT  287 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~---~~~W~~~~~~~~~~~--------------------~~~~~~~---~~~~s~l~i~  287 (365)
                      +.+..|++++|.|.....+...   .+.|++.+.......                    .+..+..   ......|.|.
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   93 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT   93 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence            3478999999999987544322   588987432211110                    0111111   1123459999


Q ss_pred             CCCcccCeEEEEEEEcCCccceecEEEEEE
Q psy3823         288 PTSELEYGTLLCWARNEQGSQRTPCTFHVV  317 (365)
Q Consensus       288 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  317 (365)
                      +++.+|+|.|.|.+.+..|.....+.|.|.
T Consensus        94 ~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          94 NLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            999999999999999999988888888775

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.1e-06  Score=62.16  Aligned_cols=77  Identities=12%  Similarity=0.139  Sum_probs=49.3

Q ss_pred             CceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCc-----C------CC--CCCcee--EecCCeEEEEEEccCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSG-----T------AP--RPLTSY--SIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~-----~------l~--~~~~~~--~~~~~~~~~l~i~~~~~~d   81 (365)
                      +...+.+.+|++++|.|... .......+.|+|....     +      ..  ......  .........|.|.+++.+|
T Consensus         2 ~~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~D   81 (108)
T d1hkfa_           2 KAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREED   81 (108)
T ss_dssp             CCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCC
Confidence            45678889999999999833 2222226789884211     0      00  011111  1234455689999999999


Q ss_pred             CeEEEEEEEeCCC
Q psy3823          82 YGTLLCWARNEQG   94 (365)
Q Consensus        82 ~G~Y~C~a~~~~~   94 (365)
                      +|.|.|.+.....
T Consensus        82 sG~Y~C~v~~~~~   94 (108)
T d1hkfa_          82 SGHYWCRIYRPSD   94 (108)
T ss_dssp             CEEEEEEEECTTT
T ss_pred             CEEEEEEEecCCC
Confidence            9999999875443

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.1e-07  Score=66.31  Aligned_cols=91  Identities=9%  Similarity=-0.019  Sum_probs=57.1

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      -+|.+...+.. . +..|++++|.|... .+... +.|+++|....................+.|.+++.+|+|.|+|..
T Consensus         6 pkPsLsa~P~~-~-V~~G~~VTL~C~~~-~~~~~-f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y   81 (99)
T d1ucta1           6 PMPFISAKSSP-V-IPLDGSVKIQCQAI-REAYL-TQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQY   81 (99)
T ss_dssp             CCCCEEESSCS-E-EETTCCEEEEECCC-TTCSE-EEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEecCCC-c-eeCCCeEEEEEcCC-CCCcE-EEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEE
Confidence            45666654433 2 78999999999864 33444 899987753222111111112233345889999999999999999


Q ss_pred             EcCCccc--eecEEEEE
Q psy3823         302 RNEQGSQ--RTPCTFHV  316 (365)
Q Consensus       302 ~n~~g~~--~~~~~l~v  316 (365)
                      .+..+..  +.++.|.|
T Consensus        82 ~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          82 RIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             EETTTEEEECCCEEEEE
T ss_pred             ECCCcccCCCCCEEEEe
Confidence            9987644  34444444

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.4e-07  Score=65.72  Aligned_cols=79  Identities=10%  Similarity=0.021  Sum_probs=52.1

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCcee-EecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc--cc
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSY-SIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR--TP   99 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~--~~   99 (365)
                      .|..|++|+|.|... .+.. .+.|++++.. ........ .........|.|.+++..|+|.|+|...+......  ..
T Consensus        17 ~V~~G~~VTL~C~~~-~~~~-~f~l~k~g~~-~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdp   93 (99)
T d1ucta1          17 VIPLDGSVKIQCQAI-REAY-LTQLMIIKNS-TYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDT   93 (99)
T ss_dssp             EEETTCCEEEEECCC-TTCS-EEEEEEEETT-EEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCC
T ss_pred             ceeCCCeEEEEEcCC-CCCc-EEEEEECCCc-CceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCCC
Confidence            477899999999854 4555 9999998764 22211111 11222333689999999999999999887654332  55


Q ss_pred             EEEEE
Q psy3823         100 CTFHV  104 (365)
Q Consensus       100 ~~l~V  104 (365)
                      ++|.|
T Consensus        94 l~L~V   98 (99)
T d1ucta1          94 LELVV   98 (99)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66655

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.4e-07  Score=68.61  Aligned_cols=85  Identities=12%  Similarity=0.212  Sum_probs=55.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCC---cceEEEEeCCCcCCCCCC---------------------ceeEe---cCCeEEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQ---AQYFTWAFNNSGTAPRPL---------------------TSYSI---QDGSTSV   71 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~---~~~v~W~~~~~~~l~~~~---------------------~~~~~---~~~~~~~   71 (365)
                      ...+.+.+|++++|.|.....+.   ...+.|++.... .....                     +....   .......
T Consensus        11 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~s   89 (124)
T d1eaja_          11 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPAD-NQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDAS   89 (124)
T ss_dssp             EEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETT-SSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCC
T ss_pred             CceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCC-CcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEE
Confidence            35577899999999998432222   226899874322 11100                     00110   1112247


Q ss_pred             EEEccCCCCCCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          72 ARYTPTSELEYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        72 l~i~~~~~~d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |.|.+++.+|+|.|.|.+.+..+.....+.|+|
T Consensus        90 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          90 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEcccEEccCEEEEEEEEECCCeEEeEEEEEE
Confidence            999999999999999999987766667777776

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=9e-08  Score=67.66  Aligned_cols=79  Identities=15%  Similarity=0.262  Sum_probs=51.8

Q ss_pred             ceecCCcEEEEEEEEecCCCCeeEEEeCCeE-----Eee-----------C--CCCceEEeeceEEEeeecCCCCeEEEE
Q psy3823         131 VLNEGVDIYFDCHIQANPPYKKLIWTHNGIT-----ISN-----------N--ASAGRIITNQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~-----l~~-----------~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C  192 (365)
                      .+.+|++|.|.|...... ...+.|+++...     +..           .  ..+.....+++|.|.+++.+|+|.|+|
T Consensus        10 ~v~~G~~V~L~c~~~p~~-~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c   88 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLA-LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (107)
T ss_dssp             SCCTTCCEEEEEESCCTT-CSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             cccCCCCEEEEecCCCCC-ceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEE
Confidence            366999999999743322 334899985321     110           0  011123347899999999999999999


Q ss_pred             EEEcCCCCCCcccEEEEE
Q psy3823         193 SAINSQGEGGSTPFDLNI  210 (365)
Q Consensus       193 ~~~~~~~~~~s~~~~l~v  210 (365)
                      .+.+..+......+.|.|
T Consensus        89 ~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          89 DMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEETTEEECCCCEEECC
T ss_pred             EEEECCCCEEEEEEEEEE
Confidence            998776544435555554

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=1.9e-06  Score=61.41  Aligned_cols=75  Identities=9%  Similarity=0.101  Sum_probs=49.8

Q ss_pred             CceEEEEecCCcEEEEEEeC-CCCCcceEEEEeCCCc----CC----------CCCCceeE--ecCCeEEEEEEccCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVD-ANPQAQYFTWAFNNSG----TA----------PRPLTSYS--IQDGSTSVARYTPTSEL   80 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~----~l----------~~~~~~~~--~~~~~~~~l~i~~~~~~   80 (365)
                      .+..+.+.+|++++|.|... ..... .+.||+....    .+          ....+...  ..+.....|.|.+++.+
T Consensus         5 sP~~l~v~~G~~vtl~C~~~~~~~~~-~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   83 (114)
T d3bp5a1           5 YPAWLTVSEGANATFTCSLSNWSEDL-MLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN   83 (114)
T ss_dssp             ESSEEEEETTCCEEEEEEESCCCTTC-EEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGG
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCcc-eEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcC
Confidence            45678899999999999853 33445 7899984211    00          00111111  13345567999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy3823          81 EYGTLLCWARNEQ   93 (365)
Q Consensus        81 d~G~Y~C~a~~~~   93 (365)
                      |+|.|.|.+....
T Consensus        84 Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          84 DSGIYLCGAISLH   96 (114)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             CCeEEEEEEEeCC
Confidence            9999999887544

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=2.1e-06  Score=60.29  Aligned_cols=72  Identities=14%  Similarity=0.233  Sum_probs=48.9

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc-----CC--------CCCCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-----TA--------PRPLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~-----~l--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      |+....+.+|++++|.|........ .+.|||....     ++        ................|.|.+++.+|+|.
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTS-RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAI   84 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCc-cEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCC
Confidence            4456788999999999996544555 8999985321     00        00111122233455689999999999999


Q ss_pred             EEEEEE
Q psy3823          85 LLCWAR   90 (365)
Q Consensus        85 Y~C~a~   90 (365)
                      |.|.+.
T Consensus        85 YyCa~~   90 (106)
T d1lk3l1          85 YFCQQS   90 (106)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            999654

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.2e-07  Score=62.01  Aligned_cols=78  Identities=12%  Similarity=0.012  Sum_probs=53.2

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCCc--ccE
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQR--TPC  100 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~--~~~  100 (365)
                      .|..|++|+|.|... .+.. .+.|++++.. ...... .....+....|.|.+++..|+|.|+|...+......  ..+
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~-~f~L~k~g~~-~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~l   89 (95)
T d1olla1          14 MVPKEKQVTICCQGN-YGAV-EYQLHFEGSL-FAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL   89 (95)
T ss_dssp             EEETTCCEEEEEECC-TTCC-EEEEEETTEE-EEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCE
T ss_pred             cccCCCcEEEEEecC-CCcc-EEEEEECCCC-cceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCE
Confidence            367999999999853 3455 8999998854 221111 001233445799999999999999999887654332  566


Q ss_pred             EEEE
Q psy3823         101 TFHV  104 (365)
Q Consensus       101 ~l~V  104 (365)
                      +|.|
T Consensus        90 eL~V   93 (95)
T d1olla1          90 DLVV   93 (95)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6666

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.40  E-value=1.6e-06  Score=61.73  Aligned_cols=77  Identities=13%  Similarity=0.208  Sum_probs=52.6

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------CCCC------ce--eEecCCeEEEEEEccCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------PRPL------TS--YSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------~~~~------~~--~~~~~~~~~~l~i~~~~~~d   81 (365)
                      ..+..+.+.+|+.++|.|........ .+.|||-.... .      ....      ..  ..........|.|.+++.+|
T Consensus         5 Q~P~~v~v~~G~sv~L~C~~s~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (113)
T d2bnqd1           5 QIPAALSVPEGENLVLNCSFTDSAIY-NLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGD   83 (113)
T ss_dssp             CSSSEEEEETTCCEEEEEEESCCCEE-EEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             eeCCEEEEcCCCCEEEEEEEecCccc-CCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCC
Confidence            34667889999999999996555555 89999833110 0      0000      00  12234456689999999999


Q ss_pred             CeEEEEEEEeCCC
Q psy3823          82 YGTLLCWARNEQG   94 (365)
Q Consensus        82 ~G~Y~C~a~~~~~   94 (365)
                      +|.|.|.+....+
T Consensus        84 sg~YyCa~~~~~~   96 (113)
T d2bnqd1          84 SATYLCAVRPTSG   96 (113)
T ss_dssp             CEEEEEEEEESSS
T ss_pred             CcEEeEeEecCCC
Confidence            9999999876544

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.1e-07  Score=64.82  Aligned_cols=87  Identities=10%  Similarity=0.124  Sum_probs=53.3

Q ss_pred             CceEEEEecCCcEEEEEEeCCCC-C-cceEEEEeCCCcCC-----------C--CCCce--eEecCCeEEEEEEccCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANP-Q-AQYFTWAFNNSGTA-----------P--RPLTS--YSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p-~-~~~v~W~~~~~~~l-----------~--~~~~~--~~~~~~~~~~l~i~~~~~~   80 (365)
                      ++..+.+.+|++++|.|...... . ...+.|+|......           .  .....  .........+|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            45567889999999999843221 1 12678988542200           0  00111  1223344558999999999


Q ss_pred             CCeEEEEEEEeCCCCCcccEEEEE
Q psy3823          81 EYGTLLCWARNEQGNQRTPCTFHV  104 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~~~~~~l~V  104 (365)
                      |+|.|.|.+..........+.|+|
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V  108 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEV  108 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEE
Confidence            999999988643333335577777

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.39  E-value=1.4e-06  Score=62.19  Aligned_cols=75  Identities=13%  Similarity=0.226  Sum_probs=51.9

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------C-CCCce-----e--EecCCeEEEEEEccCCCCCCe
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------P-RPLTS-----Y--SIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------~-~~~~~-----~--~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +..+.+.+|++++|.|.....+.. .+.||+-.... .      . .....     .  ........+|.|.+++.+|+|
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~-~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg   85 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFS-NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSA   85 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCS-EEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCS
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCcc-CceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCc
Confidence            567889999999999996555556 89999854210 0      0 00100     1  113345678999999999999


Q ss_pred             EEEEEEEeCCC
Q psy3823          84 TLLCWARNEQG   94 (365)
Q Consensus        84 ~Y~C~a~~~~~   94 (365)
                      .|.|.+.....
T Consensus        86 ~Y~Ca~~~~~~   96 (114)
T d2cdea1          86 SYICVVSDRGS   96 (114)
T ss_dssp             EEEEEEECSCT
T ss_pred             ccceeeecCCC
Confidence            99999987544

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=2.4e-06  Score=59.94  Aligned_cols=73  Identities=12%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      .+..+.+.+|++++|.|...+.... .+.||+..... .            ................|.|.+++.+|+|.
T Consensus         7 sP~~ltv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1           7 SSSSFSVSLGDRVTITCKASEDIYS-RLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             CCSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred             eCCEEEECCCCCEEEEEecCCCccc-ccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence            3667889999999999995544445 79999843210 0            00111122234445689999999999999


Q ss_pred             EEEEEEe
Q psy3823          85 LLCWARN   91 (365)
Q Consensus        85 Y~C~a~~   91 (365)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1ospl1          86 YFCQQYW   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEeecc
Confidence            9998653

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=2.1e-06  Score=60.17  Aligned_cols=71  Identities=14%  Similarity=0.268  Sum_probs=48.8

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc-----CC--------CCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-----TA--------PRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~-----~l--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|........ .+.|||....     ++        ................|.|.+++.+|+|.|
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~-~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   86 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISG-YLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADY   86 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCC-CEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEE
Confidence            456778999999999996555666 7999984321     00        001111222233456899999999999999


Q ss_pred             EEEEE
Q psy3823          86 LCWAR   90 (365)
Q Consensus        86 ~C~a~   90 (365)
                      .|.+.
T Consensus        87 yCa~~   91 (107)
T d1c5cl1          87 YCLQY   91 (107)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99765

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.36  E-value=1.2e-06  Score=61.17  Aligned_cols=73  Identities=18%  Similarity=0.277  Sum_probs=49.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      |+..+.+.+|++++|.|........ .+.|||-.... .            ..........+.....|.|.+++.+|+|.
T Consensus         4 Qp~sl~~~~G~svtl~C~~~~~~~~-~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   82 (103)
T d8faba1           4 QPPSVSVSPGQTARITCSANALPNQ-YAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEAD   82 (103)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCC-CEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCce
Confidence            4557888999999999996544445 78999853210 0            00111122334455689999999999999


Q ss_pred             EEEEEEe
Q psy3823          85 LLCWARN   91 (365)
Q Consensus        85 Y~C~a~~   91 (365)
                      |.|.+..
T Consensus        83 YyCA~~~   89 (103)
T d8faba1          83 YYCQAWD   89 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeeecC
Confidence            9997653

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.35  E-value=1.6e-06  Score=60.76  Aligned_cols=72  Identities=17%  Similarity=0.240  Sum_probs=48.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C----------C--CCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A----------P--RPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l----------~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      |..+.+.+|++++|.|........ .+.||+..... .          .  ..........+....|.|.+++.+|+|.|
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDD-DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDY   86 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCc-cEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEE
Confidence            567788999999999996555555 79999742210 0          0  01111122233456899999999999999


Q ss_pred             EEEEEe
Q psy3823          86 LCWARN   91 (365)
Q Consensus        86 ~C~a~~   91 (365)
                      .|.+..
T Consensus        87 yCa~~~   92 (106)
T d1i8ka_          87 YCLQSF   92 (106)
T ss_dssp             EEEECS
T ss_pred             eEecCc
Confidence            997653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.35  E-value=1.7e-06  Score=61.72  Aligned_cols=77  Identities=12%  Similarity=0.120  Sum_probs=50.7

Q ss_pred             CCceEEEEecCCcEEEEEE-eCCCCCcceEEEEeCC--Cc--CC----CCCCce--------eEecCCeEEEEEEccCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCT-VDANPQAQYFTWAFNN--SG--TA----PRPLTS--------YSIQDGSTSVARYTPTSE   79 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~--~~--~l----~~~~~~--------~~~~~~~~~~l~i~~~~~   79 (365)
                      ..+..+.+.+|++|+|.|. ....... .+.||+-.  ..  .+    ......        ..........|.|.+++.
T Consensus         5 Q~~~~v~v~~G~~VtL~C~~~~~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           5 QAQTEISVVEKEDVTLDCVYETRDTTY-YLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             CCCCEEEEETTCCEEECCEEECSCSSC-EEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             ecCCeEEEeCCCCEEEEEEEcCCCcCc-cEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            3466778999999999998 4344445 78899832  21  00    000110        122334566899999999


Q ss_pred             CCCeEEEEEEEeCCC
Q psy3823          80 LEYGTLLCWARNEQG   94 (365)
Q Consensus        80 ~d~G~Y~C~a~~~~~   94 (365)
                      +|+|.|.|.+....+
T Consensus        84 ~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          84 VDSAVYFCALSGFYN   98 (114)
T ss_dssp             GGCEEEEEEEECSBT
T ss_pred             ccCCCceEeCCCCCC
Confidence            999999998765444

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.3e-07  Score=65.59  Aligned_cols=70  Identities=16%  Similarity=0.234  Sum_probs=45.8

Q ss_pred             EEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCC-C--------CC--CceeE-----ecCCeEEEEEEccCCCCCCeE
Q psy3823          21 IYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTA-P--------RP--LTSYS-----IQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l-~--------~~--~~~~~-----~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      .+...+|++++|+|........ .+.|++...... .        ..  ...+.     .......+|.|.+++.+|+|.
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~   81 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   81 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCc-eEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEE
Confidence            4567899999999996555555 899998654200 0        00  00010     011122369999999999999


Q ss_pred             EEEEEEe
Q psy3823          85 LLCWARN   91 (365)
Q Consensus        85 Y~C~a~~   91 (365)
                      |.|.+.+
T Consensus        82 Y~C~v~~   88 (97)
T d2nxyb1          82 YICEVED   88 (97)
T ss_dssp             EEEEETT
T ss_pred             EEEEEec
Confidence            9999853

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=3.4e-06  Score=59.26  Aligned_cols=72  Identities=14%  Similarity=0.213  Sum_probs=49.9

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC---------CCCCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA---------PRPLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      .+..+.+.+|++++|.|........ .+.||+....    .+         ................|.|.+++.+|+|.
T Consensus         7 sP~~l~v~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~   85 (107)
T d1kcvl1           7 SPKSMGMSVGEAVTLNCKASENVGT-YVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDAD   85 (107)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             cCCEEeECCCCCEEEEEEecCCcCC-ceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCce
Confidence            3567889999999999996555555 7999984221    00         01111122334455689999999999999


Q ss_pred             EEEEEE
Q psy3823          85 LLCWAR   90 (365)
Q Consensus        85 Y~C~a~   90 (365)
                      |.|.+.
T Consensus        86 YyCa~~   91 (107)
T d1kcvl1          86 YYCGQS   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999864

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=2.2e-06  Score=61.86  Aligned_cols=77  Identities=16%  Similarity=0.171  Sum_probs=49.9

Q ss_pred             CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeC--CCCCCCC---------CCce-------------eEeeCC
Q psy3823         224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFN--NSDTAPR---------PLTS-------------YSIQDG  279 (365)
Q Consensus       224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~--~~~~~~~---------~~~~-------------~~~~~~  279 (365)
                      |.+...+.... +.+|++++|.|.+.+..... +.|++-  |......         ....             .....+
T Consensus         2 ~~~~~~P~~~~-~~~G~~vtL~C~~~~~~~~~-v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~   79 (122)
T d1nezg_           2 PELRIFPKKMD-AELGQKVDLVCEVLGSVSQG-CSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN   79 (122)
T ss_dssp             CEEEEESSCEE-ECTTCCEEEEEEEESCCSSC-EEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT
T ss_pred             CceEEcCCEEE-ECCCCCEEEEEEEcCccCCC-EEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCC
Confidence            34443343433 88999999999997766666 999873  2211000         0000             012334


Q ss_pred             CEEEEEEcCCCcccCeEEEEEEE
Q psy3823         280 STSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       280 ~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      ....|.|.+++.+|+|.|.|.+.
T Consensus        80 ~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          80 NKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEeEEEEcccccCCCEEEEeeEe
Confidence            55689999999999999999875

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.32  E-value=4.3e-06  Score=58.83  Aligned_cols=72  Identities=17%  Similarity=0.273  Sum_probs=49.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC-C--------CCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA-P--------RPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l-~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      |..+.+.+|++++|.|........ .+.||+....    .+ .        ...............|.|.+++.+|+|.|
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~-~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Y   86 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYS-YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSY   86 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCc-ccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeE
Confidence            567788999999999996544455 7999984321    00 0        00111222334556899999999999999


Q ss_pred             EEEEEe
Q psy3823          86 LCWARN   91 (365)
Q Consensus        86 ~C~a~~   91 (365)
                      .|.+..
T Consensus        87 yCA~~~   92 (109)
T d1mqkl_          87 YCQHHY   92 (109)
T ss_dssp             EEEECS
T ss_pred             EEeeeC
Confidence            998763

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.31  E-value=2.6e-06  Score=59.88  Aligned_cols=74  Identities=11%  Similarity=0.173  Sum_probs=50.0

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC-------C--CCCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA-------P--RPLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l-------~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      |+..+.+.+|++++|.|........ .+.||+....    .+       .  ...............|.|.+++.+|+|.
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav   84 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSR-SVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEAD   84 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCc-ceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEE
Confidence            4456788999999999995443445 7999975321    00       0  0111122334455689999999999999


Q ss_pred             EEEEEEeC
Q psy3823          85 LLCWARNE   92 (365)
Q Consensus        85 Y~C~a~~~   92 (365)
                      |.|.+...
T Consensus        85 YyCA~~~~   92 (109)
T d1w72l1          85 YYCQVWDS   92 (109)
T ss_dssp             EEEEEEET
T ss_pred             EEEEecCC
Confidence            99987654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.31  E-value=6.5e-06  Score=58.91  Aligned_cols=76  Identities=12%  Similarity=0.063  Sum_probs=51.0

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC----CC----------CCce-eEecCCeEEEEEEccCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA----PR----------PLTS-YSIQDGSTSVARYTPTS   78 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l----~~----------~~~~-~~~~~~~~~~l~i~~~~   78 (365)
                      .+....+.+|++++|.|...+.... .+.|||-...    .+    ..          .... ..........|.|.+++
T Consensus         7 ~P~~~~~~~G~~v~L~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   85 (118)
T d2ij0c1           7 HPSMVIVKSGTSVKIECRSLDTNIH-TMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAH   85 (118)
T ss_dssp             ECSEEEECTTCCEEEEEEECSSCCS-EEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEcCCccc-EEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccc
Confidence            3556778999999999996544456 8999984221    00    00          0111 12234455689999999


Q ss_pred             CCCCeEEEEEEEeCCC
Q psy3823          79 ELEYGTLLCWARNEQG   94 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~~   94 (365)
                      .+|+|.|.|.+....+
T Consensus        86 ~~Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          86 PEDSGFYVCSALAGSG  101 (118)
T ss_dssp             GGGCEEEEEEEECSSC
T ss_pred             cccCceEEEEEecCCC
Confidence            9999999999865433

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4.4e-06  Score=58.94  Aligned_cols=70  Identities=14%  Similarity=0.196  Sum_probs=49.3

Q ss_pred             ceecCCcEEEEEEEEe-cCCCC-eeEEEeCCeEEeeCCC------CceEEeeceEEEeeecCCCCeEEEEEEEcCCCC
Q psy3823         131 VLNEGVDIYFDCHIQA-NPPYK-KLIWTHNGITISNNAS------AGRIITNQTLVLQSVTRHSGGLYACSAINSQGE  200 (365)
Q Consensus       131 ~~~~g~~v~l~C~~~~-~p~~~-~i~W~~~~~~l~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~  200 (365)
                      .+.+|+.++|.|.+.+ +|.+. .+.|++++..+.....      .........|.+.....++...|+|+|.+..+.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            4789999999999996 55432 4889999988753221      112222456777766667778999999988654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.5e-07  Score=64.26  Aligned_cols=72  Identities=14%  Similarity=0.098  Sum_probs=49.4

Q ss_pred             EecCCcEEEEEE-eCCCCCc-ceEEEEeCCCcCCCCCCcee-Eec---CCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          24 ALRNEQVLVSCT-VDANPQA-QYFTWAFNNSGTAPRPLTSY-SIQ---DGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        24 v~~G~~~~l~C~-~~~~p~~-~~v~W~~~~~~~l~~~~~~~-~~~---~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      +.+|+.++|.|. .+++|.+ ..+.|++++.. +....... ...   ....+.|.+.....++...|+|.|.+.....
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~-~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~   90 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHL-MKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM   90 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEE-EEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCce-eeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCc
Confidence            679999999999 6677865 26899999876 43221110 001   1233467887777777889999999876543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.30  E-value=2.3e-06  Score=60.60  Aligned_cols=85  Identities=14%  Similarity=0.254  Sum_probs=53.8

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C-------CCCC-----ce--eEecCCeEEEEEEccCCCCCCe
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A-------PRPL-----TS--YSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l-------~~~~-----~~--~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +....+.+|++++|.|........ .+.||+-.... .       ....     ..  ..........|.|.+++.+|+|
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~-~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   84 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFD-YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA   84 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEE-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCS
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCc-EEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCce
Confidence            456778999999999996544445 79999853210 0       0000     00  1123345568999999999999


Q ss_pred             EEEEEEEeCCCCCc---ccEEEEE
Q psy3823          84 TLLCWARNEQGNQR---TPCTFHV  104 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~---~~~~l~V  104 (365)
                      .|.|.+....+...   .-..|+|
T Consensus        85 ~YyCa~~~~~~~~~~FG~GT~L~V  108 (110)
T d1u3ha1          85 TYFCAASANSGTYQRFGTGTKLQV  108 (110)
T ss_dssp             EEEECCEESSSCCCCCCSCEEEEE
T ss_pred             eEeeeecCCCCCCCEECCCeEEEE
Confidence            99998764433221   3355555

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=3.6e-06  Score=59.10  Aligned_cols=71  Identities=13%  Similarity=0.211  Sum_probs=49.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|........ .+.|||..... +            ................|.|.+++.+|+|.|
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGN-NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCc-ceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEE
Confidence            567889999999999995444455 79999854320 0            001111223344556899999999999999


Q ss_pred             EEEEE
Q psy3823          86 LCWAR   90 (365)
Q Consensus        86 ~C~a~   90 (365)
                      .|.+.
T Consensus        87 yCa~~   91 (107)
T d1j1pl_          87 FCQQA   91 (107)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            99764

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.29  E-value=3.5e-06  Score=59.01  Aligned_cols=72  Identities=15%  Similarity=0.248  Sum_probs=49.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC--------C-CCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA--------P-RPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l--------~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|........ .+.||+-...    ++        . ..........+....|.|.+++.+|+|.|
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Y   85 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKK-YIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATY   85 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCC-CeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeE
Confidence            566788999999999996555555 7999984221    00        0 11111222334556899999999999999


Q ss_pred             EEEEEe
Q psy3823          86 LCWARN   91 (365)
Q Consensus        86 ~C~a~~   91 (365)
                      .|.+..
T Consensus        86 yCa~~~   91 (106)
T d1a0ql1          86 YCLQYY   91 (106)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            998653

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.29  E-value=4.3e-06  Score=59.21  Aligned_cols=73  Identities=10%  Similarity=0.160  Sum_probs=49.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C-------CCC-----Cce--eEecCCeEEEEEEccCCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A-------PRP-----LTS--YSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l-------~~~-----~~~--~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      .+..+.+.+|++++|.|........ .+.||+..... .       ...     ...  ..........|.|.+++.+|+
T Consensus         6 ~p~s~~~~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (111)
T d1bd2d1           6 NSPSLSVQEGRISILNCDYTNSMFD-YFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDS   84 (111)
T ss_dssp             CCSEEEEETTSCEEEEEEECCTTCC-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             cCCEEEEcCCCCEEEEEEeCCCCCC-eEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccccc
Confidence            3566778999999999995444555 78999843210 1       000     011  122345677999999999999


Q ss_pred             eEEEEEEEe
Q psy3823          83 GTLLCWARN   91 (365)
Q Consensus        83 G~Y~C~a~~   91 (365)
                      |.|.|.+..
T Consensus        85 a~YyCa~~~   93 (111)
T d1bd2d1          85 AVYFCAAME   93 (111)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEeeccC
Confidence            999998763

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.29  E-value=3.5e-06  Score=59.14  Aligned_cols=71  Identities=11%  Similarity=0.219  Sum_probs=49.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC---------CCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA---------PRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|........ .+.||+....    .+         ................|.|.+++.+|+|.|
T Consensus         8 P~sl~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Y   86 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQGVTS-ALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATY   86 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCCc-cEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceE
Confidence            567888999999999996544455 8899985321    00         011111222344556899999999999999


Q ss_pred             EEEEE
Q psy3823          86 LCWAR   90 (365)
Q Consensus        86 ~C~a~   90 (365)
                      .|.+.
T Consensus        87 yCa~~   91 (107)
T d1tjgl1          87 YCQQL   91 (107)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99754

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.29  E-value=5.5e-06  Score=58.10  Aligned_cols=72  Identities=13%  Similarity=0.242  Sum_probs=49.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|........ .+.||+..... .            ...........+....|.|.+++.+|+|.|
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Y   86 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISK-SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMY   86 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEE
T ss_pred             CCeEEecCCCCEEEEEEccCCcCC-ceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEE
Confidence            466778999999999996544555 79999853220 0            001111223445566899999999999999


Q ss_pred             EEEEEe
Q psy3823          86 LCWARN   91 (365)
Q Consensus        86 ~C~a~~   91 (365)
                      .|.+..
T Consensus        87 yCA~~~   92 (108)
T d1jhll_          87 ICQQHN   92 (108)
T ss_dssp             EEEECS
T ss_pred             EEeeCC
Confidence            997553

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.28  E-value=8.6e-06  Score=57.65  Aligned_cols=73  Identities=18%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             CceEEEEecCCcEEEEEEeCC-C-CCcceEEEEeCCCc----CC-------C--CCCceeEecCCeEEEEEEccCCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDA-N-PQAQYFTWAFNNSG----TA-------P--RPLTSYSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~-~-p~~~~v~W~~~~~~----~l-------~--~~~~~~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      |+..+.+.+|++++|.|...+ . ... .+.||+....    .+       .  ...............|.|.+++.+|+
T Consensus         6 Q~ps~~v~~G~svtL~C~~s~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Ds   84 (114)
T d2rhea_           6 QPPSASGTPGQRVTISCTGSATDIGSN-SVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDE   84 (114)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTS-CEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cCCcEEeCCCCCEEEEEEECCccccCC-cccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccC
Confidence            344678899999999998433 2 344 7999985432    00       0  00111222234456899999999999


Q ss_pred             eEEEEEEEe
Q psy3823          83 GTLLCWARN   91 (365)
Q Consensus        83 G~Y~C~a~~   91 (365)
                      +.|.|.+..
T Consensus        85 A~YyCA~~~   93 (114)
T d2rhea_          85 ADYYCAAWN   93 (114)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEeecC
Confidence            999998764

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.28  E-value=2.1e-06  Score=61.29  Aligned_cols=75  Identities=9%  Similarity=0.114  Sum_probs=49.5

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC-------CC--CCceeE--ecCCeEEEEEEccCCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA-------PR--PLTSYS--IQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l-------~~--~~~~~~--~~~~~~~~l~i~~~~~~d~   82 (365)
                      .+..+.+.+|++++|.|........ .+.|||....    .+       ..  ......  ........|.|.+++.+|+
T Consensus         7 ~~~~v~v~~G~~vtL~C~~~~~~~~-~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1lp9e1           7 TEGLVTLTEGLPVMLNCTYQSTYSP-FLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDS   85 (115)
T ss_dssp             CCSEEEEETTSCEEECEEEECSSSC-CEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGC
T ss_pred             CCCeEEECCCCCEEEEEEEeCCCcC-CeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccC
Confidence            3567889999999999995445566 8999984311    00       00  011111  1222344699999999999


Q ss_pred             eEEEEEEEeCC
Q psy3823          83 GTLLCWARNEQ   93 (365)
Q Consensus        83 G~Y~C~a~~~~   93 (365)
                      |.|.|.+....
T Consensus        86 g~YyCa~~~~~   96 (115)
T d1lp9e1          86 ALYYCALFLAS   96 (115)
T ss_dssp             EEEEEEEEECS
T ss_pred             ccceEEEEcCC
Confidence            99999876543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=2.5e-06  Score=61.35  Aligned_cols=85  Identities=16%  Similarity=0.159  Sum_probs=49.8

Q ss_pred             ceEEEEecCCcEEEEEEeC-CCC--CcceEEEEeCCCcCCCC----------------C----CceeEe--cCCeEEEEE
Q psy3823          19 QRIYGALRNEQVLVSCTVD-ANP--QAQYFTWAFNNSGTAPR----------------P----LTSYSI--QDGSTSVAR   73 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~-~~p--~~~~v~W~~~~~~~l~~----------------~----~~~~~~--~~~~~~~l~   73 (365)
                      +..+.+..|++++|.|... ..+  ....+.|++.... -..                .    .+....  ......+|.
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEG-GRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETT-CCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEeccc-CCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence            3456689999999999832 111  2238999874321 000                0    000111  111223799


Q ss_pred             EccCCCCCCeEEEEEEEeCCCCCc--ccEEEEE
Q psy3823          74 YTPTSELEYGTLLCWARNEQGNQR--TPCTFHV  104 (365)
Q Consensus        74 i~~~~~~d~G~Y~C~a~~~~~~~~--~~~~l~V  104 (365)
                      |.+++.+|+|.|.|.+.+..+...  ..++|.|
T Consensus        85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            999999999999999987544332  4566666

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.26  E-value=5.9e-06  Score=58.40  Aligned_cols=74  Identities=18%  Similarity=0.217  Sum_probs=49.0

Q ss_pred             CceEEEEecCCcEEEEEEeCC-C-CCcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDA-N-PQAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~-~-p~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      |+..+.+.+|++++|.|...+ . ... .+.||+..... .            ..........+.....|.|.+++.+|+
T Consensus         6 Qp~s~~v~~G~svtl~C~~s~~~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   84 (111)
T d1rzfl1           6 QPPSVSAAPGQKVTISCSGSSSNIGNN-DVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDE   84 (111)
T ss_dssp             CCSEEEECTTSCEEEEEECCCCCCCTS-CEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eCcceEeCCCCCEEEEEEECCcCCcCC-cccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccC
Confidence            445688999999999998433 2 234 79999753210 0            001111222334556899999999999


Q ss_pred             eEEEEEEEeC
Q psy3823          83 GTLLCWARNE   92 (365)
Q Consensus        83 G~Y~C~a~~~   92 (365)
                      |.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (111)
T d1rzfl1          85 ADYYCGTWDS   94 (111)
T ss_dssp             SEEEEEEEET
T ss_pred             cceEEeecCC
Confidence            9999987653

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.26  E-value=3.6e-06  Score=60.13  Aligned_cols=78  Identities=10%  Similarity=0.020  Sum_probs=50.4

Q ss_pred             CCceEEEEecCCcEEEEEEe-CCCCCcceEEEEeC--CCc--CC-C--CC---------CceeE--ecCCeEEEEEEccC
Q psy3823          17 SQQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFN--NSG--TA-P--RP---------LTSYS--IQDGSTSVARYTPT   77 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~--~~~--~l-~--~~---------~~~~~--~~~~~~~~l~i~~~   77 (365)
                      ..+..+.+.+|++++|.|.. ...... .+.||+-  +..  .+ .  ..         .+...  ........|+|.++
T Consensus         5 Q~p~~~~~~~G~~vtL~C~~~~~~~~~-~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (116)
T d1tvda_           5 QSSPDQTVASGSEVVLLCTYDTVYSNP-DLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPV   83 (116)
T ss_dssp             CCSCCEEEETTCCEEECCEEECCSSSC-CEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSC
T ss_pred             ccCCCEEEcCCCCEEEEEEEcCCccCC-cEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCc
Confidence            34566788999999999983 444556 8999972  221  00 0  00         01111  12234457999999


Q ss_pred             CCCCCeEEEEEEEeCCCC
Q psy3823          78 SELEYGTLLCWARNEQGN   95 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~   95 (365)
                      +.+|+|.|.|.+......
T Consensus        84 ~~~Dsg~YyCa~~~~~~~  101 (116)
T d1tvda_          84 RTEDSATYYCAFTLPPPT  101 (116)
T ss_dssp             CGGGCEEEEEEEECTTTT
T ss_pred             cccccccceeeEecCCCC
Confidence            999999999988765443

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.26  E-value=7.7e-06  Score=57.90  Aligned_cols=75  Identities=12%  Similarity=0.163  Sum_probs=49.2

Q ss_pred             CceEEEEecCCcEEEEEEeCCC---CCcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDAN---PQAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~---p~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      |+..+.+.+|++++|.|...+.   ... .+.|||..... .            ................|.|.+++.+|
T Consensus         6 QP~s~~~~~G~svtl~C~~~~~~~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   84 (112)
T d1lgva1           6 QPASVSGSPGQSITVSCTGVSSIVGSYN-LVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAED   84 (112)
T ss_dssp             CCSEEEECTTCCEEEEEECCCCSSSCCC-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             CCCcEEECCCCCEEEEEEeCCCCCCCCC-cceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCcccc
Confidence            4567889999999999984332   223 68999843210 0            00011122233456689999999999


Q ss_pred             CeEEEEEEEeCC
Q psy3823          82 YGTLLCWARNEQ   93 (365)
Q Consensus        82 ~G~Y~C~a~~~~   93 (365)
                      +|.|.|.+....
T Consensus        85 sa~YyCa~~~~~   96 (112)
T d1lgva1          85 EADYYCSSYDGS   96 (112)
T ss_dssp             CEEEEEEEECSS
T ss_pred             CEEEEEeeecCC
Confidence            999999876533

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.26  E-value=4.8e-06  Score=59.40  Aligned_cols=75  Identities=12%  Similarity=0.153  Sum_probs=49.7

Q ss_pred             CceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCc-----CC-----CCCC----cee--EecCCeEEEEEEccCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSG-----TA-----PRPL----TSY--SIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~-----~l-----~~~~----~~~--~~~~~~~~~l~i~~~~~~   80 (365)
                      .+..+.+.+|++|+|.|.. .+.... .+.|||....     ++     ....    ...  .........|.|.+++.+
T Consensus         5 ~p~~v~~~~G~~Vtl~C~~~~~~~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1fo0a_           5 TQTSISVMEKTTVTMDCVYETQDSSY-FLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIE   83 (115)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSC-EEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             cCCEEEEcCCCCEEEEEEEcCCCCCC-CCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcc
Confidence            4567889999999999984 344455 7889984321     00     0000    011  122334568999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy3823          81 EYGTLLCWARNEQ   93 (365)
Q Consensus        81 d~G~Y~C~a~~~~   93 (365)
                      |+|.|.|.+....
T Consensus        84 Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          84 DSAVYFCAMRGDY   96 (115)
T ss_dssp             GCEEEEEEEECCC
T ss_pred             ccccccceeecCC
Confidence            9999999987543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.25  E-value=5.8e-06  Score=56.98  Aligned_cols=90  Identities=18%  Similarity=0.312  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEe-eceEEEeeecCCCCeEEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIIT-NQTLVLQSVTRHSGGLYAC  192 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C  192 (365)
                      +.+|.+.+.+..     .+..|++|+|.|....  ....+.|+|+|.............. ...+.|..+...|+|.|+|
T Consensus         4 ~pkPsLsa~P~~-----~V~~G~~VTL~C~~~~--~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C   76 (99)
T d1nkra2           4 YEKPSLSAQPGP-----TVLAGENVTLSCSSRS--SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC   76 (99)
T ss_dssp             SCCCEEEEESCS-----EECTTCEEEEEEEESS--CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEE
T ss_pred             CCCCEEEEeCCC-----cccCCCeEEEEECCCC--CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEE
Confidence            568888887644     6889999999998643  3344889998753321000001111 2356788888899999999


Q ss_pred             EEEcCC----CCCCcccEEEEE
Q psy3823         193 SAINSQ----GEGGSTPFDLNI  210 (365)
Q Consensus       193 ~~~~~~----~~~~s~~~~l~v  210 (365)
                      ......    ....|+.+.|.|
T Consensus        77 ~y~~~~~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          77 FGSFHDSPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             EEEETTEEEEECCCCCCEEEEE
T ss_pred             EeecCCCCCCccCCCCCEEEEE
Confidence            876432    233445555544

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2.1e-06  Score=61.95  Aligned_cols=72  Identities=18%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCC--CcCCC---------C-CCce-------------eEecCCeEEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNN--SGTAP---------R-PLTS-------------YSIQDGSTSVA   72 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~--~~~l~---------~-~~~~-------------~~~~~~~~~~l   72 (365)
                      .|+...+.+|++++|.|...+.... .+.|||-.  .. +.         . ....             .....+....|
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L   84 (122)
T d1nezg_           7 FPKKMDAELGQKVDLVCEVLGSVSQ-GCSWLFQNSSSK-LPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVL   84 (122)
T ss_dssp             ESSCEEECTTCCEEEEEEEESCCSS-CEEEEEEESSCS-SCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEE
T ss_pred             cCCEEEECCCCCEEEEEEEcCccCC-CEEEEEECCCCC-cCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEE
Confidence            3566778999999999996555666 89999832  21 10         0 0000             11223345689


Q ss_pred             EEccCCCCCCeEEEEEEEe
Q psy3823          73 RYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        73 ~i~~~~~~d~G~Y~C~a~~   91 (365)
                      +|.+++.+|+|.|.|.+..
T Consensus        85 ~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          85 TLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EESSCCGGGCEEEEEEEEE
T ss_pred             EEcccccCCCEEEEeeEeC
Confidence            9999999999999998763

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.25  E-value=5.8e-06  Score=58.16  Aligned_cols=73  Identities=10%  Similarity=0.133  Sum_probs=48.8

Q ss_pred             CCceEEEEecCCcEEEEEEeCCC-CCcceEEEEeCCCc----CC---------CCCCceeEecCCeEEEEEEccCCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDAN-PQAQYFTWAFNNSG----TA---------PRPLTSYSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~-p~~~~v~W~~~~~~----~l---------~~~~~~~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      ..+....+.+|++++|.|..... ... .+.||+....    .+         ................|.|.+++.+|+
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNN-KLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF   84 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGG-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCc-cceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence            34567889999999999985433 344 7899985322    00         000111222334556899999999999


Q ss_pred             eEEEEEEE
Q psy3823          83 GTLLCWAR   90 (365)
Q Consensus        83 G~Y~C~a~   90 (365)
                      |.|.|.+.
T Consensus        85 a~YyCa~~   92 (108)
T d2fx7l1          85 AVYYCQQY   92 (108)
T ss_dssp             SEEEEEEC
T ss_pred             EEEeeecC
Confidence            99999865

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=6.8e-06  Score=57.60  Aligned_cols=73  Identities=14%  Similarity=0.225  Sum_probs=49.0

Q ss_pred             CCceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      ..+....+.+|++++|.|........ .+.||+..... .            ................|.|.+++.+|++
T Consensus         6 Q~p~~l~~~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA   84 (107)
T d1mexl1           6 QSQKFMSTSLGNRVSVTCKASQNVGT-NVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLA   84 (107)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             cCCCeEEECCCCCEEEEEEeCCCCCC-ceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecce
Confidence            34566888999999999995445455 78999843210 0            0011112222344568999999999999


Q ss_pred             EEEEEEE
Q psy3823          84 TLLCWAR   90 (365)
Q Consensus        84 ~Y~C~a~   90 (365)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d1mexl1          85 EYFCQQY   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eEEEeEC
Confidence            9999764

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=6.3e-06  Score=57.79  Aligned_cols=72  Identities=15%  Similarity=0.277  Sum_probs=48.8

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C-----------C-CCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A-----------P-RPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l-----------~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|........ .+.||+..... .           . ...............|.|.+++.+|+|.|
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~-~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINS-YLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIY   86 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCC-ccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEE
Confidence            466788999999999995555555 78999853210 0           0 01111222334456899999999999999


Q ss_pred             EEEEEe
Q psy3823          86 LCWARN   91 (365)
Q Consensus        86 ~C~a~~   91 (365)
                      .|....
T Consensus        87 yCa~~~   92 (107)
T d1d5il1          87 YCLQYD   92 (107)
T ss_dssp             EEEECS
T ss_pred             Eeeecc
Confidence            997643

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.22  E-value=5e-06  Score=59.15  Aligned_cols=70  Identities=13%  Similarity=0.257  Sum_probs=48.3

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-------------CCceeE--eeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-------------PLTSYS--IQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      +.+|+.++|.|......... +.|++........             ..+...  ........|.|++++.+|+|.|.|.
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~-~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca   90 (114)
T d2cdea1          12 ILEGKNCTLQCNYTVSPFSN-LRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICV   90 (114)
T ss_dssp             EETTCCCEEEEEECCSCCSE-EEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEEE
T ss_pred             EeCCCCEEEEEEEcCCCccC-ceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCccccee
Confidence            88999999999987655555 9999743211110             000111  2334567899999999999999999


Q ss_pred             EEcCCc
Q psy3823         301 ARNEQG  306 (365)
Q Consensus       301 a~n~~g  306 (365)
                      +....+
T Consensus        91 ~~~~~~   96 (114)
T d2cdea1          91 VSDRGS   96 (114)
T ss_dssp             EECSCT
T ss_pred             eecCCC
Confidence            987543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.2e-06  Score=57.30  Aligned_cols=65  Identities=12%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      .|..|++|+|.|.....+.. .+.|+|++.. .....  . .. .....+.|.+++.+|+|+|+|......
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~-~f~L~k~g~~-~~~~~--~-~~-~~~a~F~l~~v~~~~~G~Y~C~y~~~~   79 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFD-RFSLAKEGEL-SLPQH--Q-SG-EHPANFSLGPVDLNVSGIYRCYGWYNR   79 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCS-EEEEEETTCS-SCCSE--E-EC-SSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             ccCCCCeEEEEEeCCCCCce-EEEEEECCcc-cceEE--c-CC-CcccEEEEeccccccCcEEEEEEEcCC
Confidence            57899999999985333444 8999999865 32221  1 12 223479999999999999999876543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.22  E-value=4.4e-06  Score=59.55  Aligned_cols=72  Identities=10%  Similarity=0.091  Sum_probs=47.4

Q ss_pred             CceEEEEecCCcEEEEEEeCC-CCCcceEEEEeCCCc----CC------------------CCCCcee-EecCCeEEEEE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSG----TA------------------PRPLTSY-SIQDGSTSVAR   73 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~----~l------------------~~~~~~~-~~~~~~~~~l~   73 (365)
                      ++....+.+|++++|.|...+ .... .+.||+-...    .+                  ....... .........|.
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~~-~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKLT-SIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSS-EEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCCC-ceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            356678999999999999554 3344 7999974211    00                  0001101 11233445799


Q ss_pred             EccCCCCCCeEEEEEEE
Q psy3823          74 YTPTSELEYGTLLCWAR   90 (365)
Q Consensus        74 i~~~~~~d~G~Y~C~a~   90 (365)
                      |.+++.+|+|.|.|.+.
T Consensus        83 I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ecccCCCCCcEEEEeEc
Confidence            99999999999999875

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.22  E-value=7.1e-06  Score=57.39  Aligned_cols=72  Identities=11%  Similarity=0.212  Sum_probs=49.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC---------CCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA---------PRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      |..+.+.+|++++|.|........ .+.||+....    ++         ................|.|.+++.+|+|.|
T Consensus         7 P~sl~~~~G~svtL~C~~~~~~~~-~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   85 (106)
T d1op3k1           7 PSTLSASVGDTITITCRASQSIET-WLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATY   85 (106)
T ss_dssp             CSEEEECTTCEEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCC-cEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcE
Confidence            567888999999999996544455 7899985321    00         001111222344556899999999999999


Q ss_pred             EEEEEe
Q psy3823          86 LCWARN   91 (365)
Q Consensus        86 ~C~a~~   91 (365)
                      .|.+..
T Consensus        86 yCa~~~   91 (106)
T d1op3k1          86 HCQHYA   91 (106)
T ss_dssp             EEEEEC
T ss_pred             eeeeCC
Confidence            998653

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.21  E-value=3.7e-06  Score=59.04  Aligned_cols=74  Identities=18%  Similarity=0.278  Sum_probs=49.3

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc-----CC------CC--CCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-----TA------PR--PLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~-----~l------~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      |+....+.+|++++|.|........ .+.||+-...     ++      ..  ..+...........|.|.+++.+|+|.
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~   83 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKN-FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA   83 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGS-CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCc-cEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCce
Confidence            4567888999999999986544444 7899984321     00      00  011122223345689999999999999


Q ss_pred             EEEEEEeC
Q psy3823          85 LLCWARNE   92 (365)
Q Consensus        85 Y~C~a~~~   92 (365)
                      |.|.+...
T Consensus        84 YyCA~~~~   91 (108)
T d1nfde1          84 YYCLSSYG   91 (108)
T ss_dssp             EEEEEEET
T ss_pred             EEEEeecC
Confidence            99987643

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.21  E-value=8e-06  Score=57.48  Aligned_cols=71  Identities=14%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC---------CCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA---------PRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|...+.... .+.||+....    .+         ...........+....|.|.+++.+|+|.|
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Y   88 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIK-YLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATY   88 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCC-cceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceE
Confidence            456778999999999996554455 7899984321    00         001111222334456899999999999999


Q ss_pred             EEEEE
Q psy3823          86 LCWAR   90 (365)
Q Consensus        86 ~C~a~   90 (365)
                      .|.+.
T Consensus        89 yCA~~   93 (109)
T d1bwwa_          89 YCQQY   93 (109)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            99865

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.19  E-value=6.5e-06  Score=58.40  Aligned_cols=84  Identities=14%  Similarity=0.153  Sum_probs=53.9

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc-----CCC--CCC----c--ee-EecCCeEEEEEEccCCCCCCeE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-----TAP--RPL----T--SY-SIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~-----~l~--~~~----~--~~-~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      +..+.+.+|++++|.|.... ... .+.||+-...     ++.  ...    .  .. .........|.|.+++.+|+|.
T Consensus         8 P~~~~v~~G~~vtl~C~~~~-~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTT-TMR-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGT   85 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCS-EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEEec-CCc-cceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEE
Confidence            46778899999999999643 345 7999984221     000  000    0  00 1122345679999999999999


Q ss_pred             EEEEEEeCCCCCc----ccEEEEE
Q psy3823          85 LLCWARNEQGNQR----TPCTFHV  104 (365)
Q Consensus        85 Y~C~a~~~~~~~~----~~~~l~V  104 (365)
                      |.|.+....+...    .-..|+|
T Consensus        86 YyCa~~~~~~~~~~~FG~GT~L~V  109 (113)
T d1h5ba_          86 YFCAAEASSGSWQLIFGSGTQLTV  109 (113)
T ss_dssp             EEEEEECSSSSSSCEECCCEEEEE
T ss_pred             EEEEecCCCCCCeeEECcCEEEEE
Confidence            9999875544332    3356666

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.18  E-value=7.4e-06  Score=58.01  Aligned_cols=74  Identities=12%  Similarity=0.139  Sum_probs=49.3

Q ss_pred             CCceEEEEecCCcEEEEEEeCC-CCCcceEEEEeCCCcC-CC----------CCCc--eeEecCCeEEEEEEccCCCCCC
Q psy3823          17 SQQRIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSGT-AP----------RPLT--SYSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~~-l~----------~~~~--~~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      .++..+.+.+|++++|.|...+ .... .+.|||-.... +.          ....  .....+.....|.|.+++.+|+
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~-~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   81 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTD-YIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDA   81 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTC-CEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccc-cEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccc
Confidence            3566788999999999998543 3334 68999943210 10          0001  1122344566899999999999


Q ss_pred             eEEEEEEEe
Q psy3823          83 GTLLCWARN   91 (365)
Q Consensus        83 G~Y~C~a~~   91 (365)
                      |.|.|.+..
T Consensus        82 a~YyCa~~~   90 (112)
T d1kgcd1          82 AVYYCILPL   90 (112)
T ss_dssp             EEEEEECCC
T ss_pred             eeEeeeEec
Confidence            999998754

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3.5e-06  Score=59.96  Aligned_cols=73  Identities=22%  Similarity=0.223  Sum_probs=48.0

Q ss_pred             CceEEEEecCCcEEEEEEe-CCCCCcceEEEEeCCCcC-CC--------CC----------CceeEecCCeEEEEEEccC
Q psy3823          18 QQRIYGALRNEQVLVSCTV-DANPQAQYFTWAFNNSGT-AP--------RP----------LTSYSIQDGSTSVARYTPT   77 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~~~~~-l~--------~~----------~~~~~~~~~~~~~l~i~~~   77 (365)
                      .|....+.+|++++|.|.. .+.... .+.|||-.... +.        ..          .+...........|.|.++
T Consensus         6 sP~~~t~~~G~~vtL~C~~~~~~~~~-~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l   84 (114)
T d1akjd_           6 SPLDRTWNLGETVELKCQVLLSNPTS-GCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDF   84 (114)
T ss_dssp             ECCSCCCCTTCCEEEEEEECCSSCCS-CEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSC
T ss_pred             CCCcEeccCCCcEEEEEEeCCCcCCC-CEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccC
Confidence            3555668899999999984 344445 79999843210 00        00          0111222334568999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy3823          78 SELEYGTLLCWARN   91 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~   91 (365)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          85 RRENEGYYFCSALS   98 (114)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CCCCCEEEeEeEcC
Confidence            99999999999764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=7.6e-07  Score=61.59  Aligned_cols=67  Identities=16%  Similarity=0.196  Sum_probs=44.0

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-------------CCceeE---eeCCCEEEEEEcCCCcccCeEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-------------PLTSYS---IQDGSTSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~~~~~---~~~~~~s~l~i~~v~~~d~G~Y~C  299 (365)
                      ..+|++++|.|......... +.|++........             ..+...   ..+.....|.|++++.+|+|.|.|
T Consensus         6 ~~~G~svtL~C~~s~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C   84 (97)
T d2nxyb1           6 GKKGDTVELTCTASQKKSIQ-FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC   84 (97)
T ss_dssp             EETTSCEEECCBCSSSSCCC-EEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             EEcCCcEEEEEEEecCCCce-EEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence            67899999999886655555 9999754311000             000000   111123459999999999999999


Q ss_pred             EEEc
Q psy3823         300 WARN  303 (365)
Q Consensus       300 ~a~n  303 (365)
                      .+.+
T Consensus        85 ~v~~   88 (97)
T d2nxyb1          85 EVED   88 (97)
T ss_dssp             EETT
T ss_pred             EEec
Confidence            9965

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.16  E-value=1.5e-05  Score=56.44  Aligned_cols=71  Identities=18%  Similarity=0.196  Sum_probs=47.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C-------C--------C-CCce-eEecCCeEEEEEEccCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A-------P--------R-PLTS-YSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l-------~--------~-~~~~-~~~~~~~~~~l~i~~~~~~   80 (365)
                      +....+.+|++++|.|...+ ... .+.||+..... .       .        . .... ..........|.|.+++.+
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHV-SLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE   83 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCC-EEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCC-EEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC
Confidence            45677899999999998432 345 89999842110 0       0        0 0011 1123334568999999999


Q ss_pred             CCeEEEEEEEe
Q psy3823          81 EYGTLLCWARN   91 (365)
Q Consensus        81 d~G~Y~C~a~~   91 (365)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (112)
T d1kgce1          84 DSAVYLCASSL   94 (112)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCEEEEEeeeC
Confidence            99999998764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.15  E-value=1.8e-06  Score=61.72  Aligned_cols=73  Identities=8%  Similarity=0.099  Sum_probs=47.4

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc-----CC---CCCCc--------eeEecCCeEEEEEEccCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-----TA---PRPLT--------SYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~-----~l---~~~~~--------~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      .+..+.+.+|++++|.|........ .+.|||-...     ++   .....        ...........|.|.+++.+|
T Consensus         6 ~~~~v~v~~G~svtl~C~~~~~~~~-~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1i9ea_           6 PDARVTVSEGASLQLRCKYSYSATP-YLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSD   84 (115)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEEcCCCCC-CEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccc
Confidence            3456889999999999994333445 7889983211     00   00000        011123344579999999999


Q ss_pred             CeEEEEEEEe
Q psy3823          82 YGTLLCWARN   91 (365)
Q Consensus        82 ~G~Y~C~a~~   91 (365)
                      +|.|.|.+..
T Consensus        85 sg~YyCa~~~   94 (115)
T d1i9ea_          85 SAVYFCAVSG   94 (115)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceecccccC
Confidence            9999998764

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.15  E-value=5.4e-06  Score=57.14  Aligned_cols=70  Identities=19%  Similarity=0.161  Sum_probs=46.9

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc--eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT--SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      +..|+..+|.|.+.|+ |....+.|+++|.........  .....+++.+......+..++.+.|+|.|.+..
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECC
Confidence            4568889999999986 444479999998765432211  122445555444444555567789999999863

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.15  E-value=5.7e-06  Score=58.68  Aligned_cols=74  Identities=16%  Similarity=0.122  Sum_probs=49.5

Q ss_pred             CCceEEEEecCCcEEEEEEe-CC-CCCcceEEEEeCCCc-----CCCCCCcee--EecCCeEEEEEEccCCCCCCeEEEE
Q psy3823          17 SQQRIYGALRNEQVLVSCTV-DA-NPQAQYFTWAFNNSG-----TAPRPLTSY--SIQDGSTSVARYTPTSELEYGTLLC   87 (365)
Q Consensus        17 ~~~~~~~v~~G~~~~l~C~~-~~-~p~~~~v~W~~~~~~-----~l~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C   87 (365)
                      ..+..+.+.+|++++|.|.. +. .... .+.||+....     ++.......  .........|+|.+++.+|+|.|.|
T Consensus         5 Q~P~s~~~~~G~svtL~C~~s~~~~~~~-~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   83 (113)
T d1vesa_           5 QTPRTATKETGESLTINCVLRDASFELK-DTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKC   83 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEEESCSSCCC-EEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             eeCCEEEEcCCCCEEEEEEECCCcccCC-ccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEee
Confidence            34567888999999999984 32 2445 7999974321     011111111  1233445689999999999999999


Q ss_pred             EEEe
Q psy3823          88 WARN   91 (365)
Q Consensus        88 ~a~~   91 (365)
                      .+..
T Consensus        84 a~~~   87 (113)
T d1vesa_          84 QAFY   87 (113)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            9864

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.15  E-value=7.9e-06  Score=57.99  Aligned_cols=70  Identities=13%  Similarity=0.209  Sum_probs=47.7

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-------------CCcee--EeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-------------PLTSY--SIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~~~~--~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      +.+|+.++|.|...+..... +.|++........             ..+..  .........|.|++++.+|+|.|.|.
T Consensus        12 v~~G~sv~L~C~~s~~~~~~-~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa   90 (113)
T d2bnqd1          12 VPEGENLVLNCSFTDSAIYN-LQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCA   90 (113)
T ss_dssp             EETTCCEEEEEEESCCCEEE-EEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEecCcccC-CeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEeEe
Confidence            78999999999987655454 9999832111000             00111  13344567899999999999999999


Q ss_pred             EEcCCc
Q psy3823         301 ARNEQG  306 (365)
Q Consensus       301 a~n~~g  306 (365)
                      +....+
T Consensus        91 ~~~~~~   96 (113)
T d2bnqd1          91 VRPTSG   96 (113)
T ss_dssp             EEESSS
T ss_pred             EecCCC
Confidence            975544

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.7e-06  Score=56.66  Aligned_cols=89  Identities=18%  Similarity=0.278  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecCCCCeEEEEE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      +.+|.+.+.+.+     .+..|++|+|.|....  ....+.|+|+|........  .......+.|.+++..|+|.|+|.
T Consensus         2 ypkPsLsa~P~~-----~V~~G~~VTL~C~~~~--~~~~f~L~Keg~~~~~~~~--~~~~~a~F~i~~v~~~~~G~Y~C~   72 (93)
T d1olla2           2 YDTPTLSVHPGP-----EVISGEKVTFYCRLDT--ATSMFLLLKEGRSSHVQRG--YGKVQAEFPLGPVTTAHRGTYRCF   72 (93)
T ss_dssp             SCCCEEEEESCS-----EEETTCEEEEEEECSS--SCSEEEEEEESSSCEEEEE--ECSSEEEEEEEECCGGGCEEEEEE
T ss_pred             CCCCEEEEeCCC-----cccCCCcEEEEECCCC--CCCEEEEEECCCccceeec--CCCceeEEEecccChhcCceEEEE
Confidence            458888887654     6889999999998643  3344888887653221000  001235799999999999999997


Q ss_pred             EEcC-C-CCCCcccEEEEEe
Q psy3823         194 AINS-Q-GEGGSTPFDLNIN  211 (365)
Q Consensus       194 ~~~~-~-~~~~s~~~~l~v~  211 (365)
                      .... . ....|+.+.|.|.
T Consensus        73 ~~~~~~~wS~~SdpLeL~Vt   92 (93)
T d1olla2          73 GSYNNHAWSFPSEPVKLLVT   92 (93)
T ss_dssp             CEEETTEECCCCCCEEEEEE
T ss_pred             eECCCCCcCCCCCCEEEEee
Confidence            5422 2 2234455665553

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.14  E-value=1.2e-05  Score=56.76  Aligned_cols=71  Identities=13%  Similarity=0.141  Sum_probs=46.9

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC-----------CC--CCce-eEecCCeEEEEEEccCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA-----------PR--PLTS-YSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l-----------~~--~~~~-~~~~~~~~~~l~i~~~~~~   80 (365)
                      |+...+.+|++++|.|...+ ... .+.|||-...    .+           ..  .... ....+.....|.|.+++.+
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   83 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPIS-GHD-NLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELE   83 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCS-EEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEECC-CCc-eEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccC
Confidence            55677899999999998433 244 8999984321    00           00  0111 1122334468999999999


Q ss_pred             CCeEEEEEEEe
Q psy3823          81 EYGTLLCWARN   91 (365)
Q Consensus        81 d~G~Y~C~a~~   91 (365)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (111)
T d2esve1          84 DSGVYFCASSQ   94 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCceEEEeeeC
Confidence            99999998663

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=4.2e-06  Score=60.06  Aligned_cols=82  Identities=15%  Similarity=0.110  Sum_probs=47.5

Q ss_pred             eeecCceEEEEEEEeeeCC---CceeEEEeCCCCCCCC-------------------CCceeE--eeCCCEEEEEEcCCC
Q psy3823         235 GALRNEQVLVSCTVDANPQ---AQYFTWAFNNSDTAPR-------------------PLTSYS--IQDGSTSVARYTPTS  290 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~---~~~~~W~~~~~~~~~~-------------------~~~~~~--~~~~~~s~l~i~~v~  290 (365)
                      .+..|++++|.|.......   ...+.|++........                   ..+..+  ........|.|.+++
T Consensus        10 ~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   89 (119)
T d1neua_          10 YGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLD   89 (119)
T ss_dssp             EEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCC
T ss_pred             EEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCCC
Confidence            3889999999999853211   1158998743211000                   001111  111122459999999


Q ss_pred             cccCeEEEEEEEcCCccc--eecEEEEE
Q psy3823         291 ELEYGTLLCWARNEQGSQ--RTPCTFHV  316 (365)
Q Consensus       291 ~~d~G~Y~C~a~n~~g~~--~~~~~l~v  316 (365)
                      .+|+|.|.|.+.+..+..  ...+.|.|
T Consensus        90 ~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          90 YSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             GGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             hHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            999999999999865533  33455554

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.14  E-value=1.3e-05  Score=54.68  Aligned_cols=65  Identities=14%  Similarity=0.147  Sum_probs=43.4

Q ss_pred             CCcEEEEEEeCCCCCcceEEEEeCCCc----CC-C-CCCce--------eEecCCeEEEEEEccCCCCCCeEEEEEEEeC
Q psy3823          27 NEQVLVSCTVDANPQAQYFTWAFNNSG----TA-P-RPLTS--------YSIQDGSTSVARYTPTSELEYGTLLCWARNE   92 (365)
Q Consensus        27 G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l-~-~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~   92 (365)
                      |++++|.|........ .+.||+....    .+ . .....        ..........|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~-~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQ-SFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCC-EEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCC-cEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            7899999995555666 8999984322    00 0 00000        1123345568999999999999999987754

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.14  E-value=1.2e-05  Score=57.09  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=53.4

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------CCCC------ce--eEecCCeEEEEEEccCCCCCCe
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------PRPL------TS--YSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------~~~~------~~--~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +..+.+.+|++++|.|...+. .. .+.||+-.... +      ....      ..  ..........|.|.+++.+|+|
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~-~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   84 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FS-SLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTG   84 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CS-CEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEECCC-Cc-eEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcccee
Confidence            456778999999999995442 34 79999843210 0      0000      00  1223345678999999999999


Q ss_pred             EEEEEEEeCCCCCc--ccEEEEE
Q psy3823          84 TLLCWARNEQGNQR--TPCTFHV  104 (365)
Q Consensus        84 ~Y~C~a~~~~~~~~--~~~~l~V  104 (365)
                      .|.|.+....+...  .-..|+|
T Consensus        85 ~YyCa~~~~~~~~~FG~GT~LtV  107 (115)
T d1ogad1          85 LYLCAGAGSQGNLIFGKGTKLSV  107 (115)
T ss_dssp             EEEEEEECTTSSEEECCCEEEEE
T ss_pred             eEcccccCCCCCcEECCCEEEEE
Confidence            99998764333222  3355666

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1e-05  Score=55.29  Aligned_cols=75  Identities=13%  Similarity=0.232  Sum_probs=51.0

Q ss_pred             CCCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         222 DEPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       222 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      -+|.+...+.. . +..|++++|.|......... +.|+++|......   .  ...+....+.|.+++.+|+|.|+|..
T Consensus         4 PkP~Lsa~P~~-~-V~~G~~VTL~C~~~~~~~~~-f~L~k~g~~~~~~---~--~~~~~~a~F~l~~v~~~~~G~Y~C~y   75 (96)
T d1ucta2           4 GKPFLSADRGL-V-LMPGENISLTCSSAHIPFDR-FSLAKEGELSLPQ---H--QSGEHPANFSLGPVDLNVSGIYRCYG   75 (96)
T ss_dssp             CCCEEEESSCS-E-ECTTCCCEEEEECSSSCCSE-EEEEETTCSSCCS---E--EECSSSEEEECCSCCGGGCEEEEEEE
T ss_pred             CCCEEEEeCCC-c-cCCCCeEEEEEeCCCCCceE-EEEEECCcccceE---E--cCCCcccEEEEeccccccCcEEEEEE
Confidence            35655554433 2 88999999999863333344 8999988643221   1  12233456899999999999999988


Q ss_pred             EcC
Q psy3823         302 RNE  304 (365)
Q Consensus       302 ~n~  304 (365)
                      ...
T Consensus        76 ~~~   78 (96)
T d1ucta2          76 WYN   78 (96)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            754

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.2e-05  Score=54.64  Aligned_cols=62  Identities=15%  Similarity=0.221  Sum_probs=45.1

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      .|..|++|+|.|... .+.. .+.|+|++.. ....    .........+.|.+++.+|+|+|+|....
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~-~f~L~Keg~~-~~~~----~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~   75 (93)
T d1olla2          14 EVISGEKVTFYCRLD-TATS-MFLLLKEGRS-SHVQ----RGYGKVQAEFPLGPVTTAHRGTYRCFGSY   75 (93)
T ss_dssp             EEETTCEEEEEEECS-SSCS-EEEEEEESSS-CEEE----EEECSSEEEEEEEECCGGGCEEEEEECEE
T ss_pred             cccCCCcEEEEECCC-CCCC-EEEEEECCCc-ccee----ecCCCceeEEEecccChhcCceEEEEeEC
Confidence            468899999999853 3445 8999998765 2211    11223455899999999999999997543

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=1.2e-05  Score=57.44  Aligned_cols=74  Identities=11%  Similarity=0.041  Sum_probs=47.1

Q ss_pred             CceEEEEecCCcEEEEEEe-CCC-CCcceEEEEeCCCcC----C----CCC--------CceeEecCCeEEEEEEccCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTV-DAN-PQAQYFTWAFNNSGT----A----PRP--------LTSYSIQDGSTSVARYTPTSE   79 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~-~~~-p~~~~v~W~~~~~~~----l----~~~--------~~~~~~~~~~~~~l~i~~~~~   79 (365)
                      |+..+.+.+|++++|.|.. .+. +....+.|||.....    +    ...        .............|.|.+++.
T Consensus         5 QP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (117)
T d1dqta_           5 QPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA   84 (117)
T ss_dssp             CCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG
T ss_pred             CCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc
Confidence            4566778999999999983 222 222258899853210    0    000        001122333456899999999


Q ss_pred             CCCeEEEEEEEe
Q psy3823          80 LEYGTLLCWARN   91 (365)
Q Consensus        80 ~d~G~Y~C~a~~   91 (365)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (117)
T d1dqta_          85 VDTGLYLCKVEL   96 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCEeEEEEEec
Confidence            999999998763

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.1e-05  Score=55.18  Aligned_cols=73  Identities=14%  Similarity=0.110  Sum_probs=46.8

Q ss_pred             eeeecCceEEEEEEEeeeCCCc-eeEEEeCCCC-------------CCCCCCceeE--eeCCCEEEEEEcCCCcccCeEE
Q psy3823         234 YGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSD-------------TAPRPLTSYS--IQDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~-------------~~~~~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      ..+.+|+.++|.|......... .+.|++....             ......+..+  ........|.|.+++.+|+|.|
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y   85 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY   85 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEE
Confidence            4478999999999875432221 3679863210             1111112222  3345567899999999999999


Q ss_pred             EEEEEcCCc
Q psy3823         298 LCWARNEQG  306 (365)
Q Consensus       298 ~C~a~n~~g  306 (365)
                      .|.+.....
T Consensus        86 ~C~v~~~~~   94 (108)
T d1hkfa_          86 WCRIYRPSD   94 (108)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEecCCC
Confidence            999875443

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.1e-05  Score=55.55  Aligned_cols=80  Identities=16%  Similarity=0.271  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCCc-eEEeece---EEEeeecCCCCeE
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASAG-RIITNQT---LVLQSVTRHSGGL  189 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~~-~~~~~~~---l~i~~~~~~d~G~  189 (365)
                      .+|.+.+.+..     ....|+.++|.|.+.| +|....+.|.+||..+....... ....+++   ...-.+..++.+.
T Consensus         4 ~~P~V~v~~~~-----~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~   78 (100)
T d1k5nb_           4 RTPKIQVYSRH-----PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDE   78 (100)
T ss_dssp             BCCEEEEEESS-----CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCC
T ss_pred             CCCeeEEEcCC-----cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCE
Confidence            46777664322     2457889999999998 57777799999999874321111 1111222   2223345567789


Q ss_pred             EEEEEEcCCC
Q psy3823         190 YACSAINSQG  199 (365)
Q Consensus       190 Y~C~~~~~~~  199 (365)
                      |+|.+.+...
T Consensus        79 ytC~V~H~sl   88 (100)
T d1k5nb_          79 YACRVNHVTL   88 (100)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEEeCCC
Confidence            9999998653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.10  E-value=4.9e-06  Score=59.29  Aligned_cols=75  Identities=9%  Similarity=0.139  Sum_probs=49.0

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCC--c--CC---C-CCC------ceeE--ecCCeEEEEEEccCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNS--G--TA---P-RPL------TSYS--IQDGSTSVARYTPTSELE   81 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~--~--~l---~-~~~------~~~~--~~~~~~~~l~i~~~~~~d   81 (365)
                      .+..+.+.+|+.++|.|........ .+.||+-..  .  .|   . ...      ....  ........|.|.+++.+|
T Consensus         6 ~p~~v~~~~G~~vtl~C~~s~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1j8hd1           6 LGSHVSVSEGALVLLRCNYSSSVPP-YLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSD   84 (115)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGG
T ss_pred             CCCeEEEcCCCCEEEEEEeCCCCce-eEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccC
Confidence            4567889999999999995444455 799998421  1  00   0 000      0011  122233469999999999


Q ss_pred             CeEEEEEEEeCC
Q psy3823          82 YGTLLCWARNEQ   93 (365)
Q Consensus        82 ~G~Y~C~a~~~~   93 (365)
                      +|.|.|.+....
T Consensus        85 sa~YyCa~~~~~   96 (115)
T d1j8hd1          85 AAEYFCAVSESP   96 (115)
T ss_dssp             CEEEEEEEESST
T ss_pred             CccceeeecCCC
Confidence            999999987543

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.10  E-value=1.3e-05  Score=56.55  Aligned_cols=69  Identities=9%  Similarity=0.119  Sum_probs=46.2

Q ss_pred             eeecCceEEEEEEEeee-CCCceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         235 GALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      .+.+|++++|.|..... .... +.|++........             ........+.....|.|.+++.+|+|.|.|.
T Consensus         9 sv~~G~~vtl~C~~s~~~~~~~-l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   87 (110)
T d2esvd1           9 DCAEGRAANLPCNHSTISGNEY-VYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCI   87 (110)
T ss_dssp             EEETTSCEEEEEECTTCCTTEE-EEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEE
T ss_pred             EECCCCCEEEEEEEcCCCCCCe-EEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEE
Confidence            38899999999987543 3344 8999742211100             1111123345677899999999999999998


Q ss_pred             EEcC
Q psy3823         301 ARNE  304 (365)
Q Consensus       301 a~n~  304 (365)
                      +...
T Consensus        88 ~~~~   91 (110)
T d2esvd1          88 VVRS   91 (110)
T ss_dssp             EEES
T ss_pred             EeCC
Confidence            8643

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.08  E-value=1.2e-05  Score=56.76  Aligned_cols=74  Identities=14%  Similarity=0.119  Sum_probs=49.3

Q ss_pred             ceEEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCc-----CCCCCCcee--EecCCeEEEEEEccCCCCCCeEEEEEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSG-----TAPRPLTSY--SIQDGSTSVARYTPTSELEYGTLLCWA   89 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~-----~l~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a   89 (365)
                      +..+.+.+|+.++|.|...+  .... .+.||+....     ++.......  .........|+|.+++.+|+|.|.|.+
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~-~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~   84 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALG-STCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGL   84 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCC-CEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCC-ceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEE
Confidence            55677899999999998532  2445 8999984311     011111111  123334568999999999999999987


Q ss_pred             EeCC
Q psy3823          90 RNEQ   93 (365)
Q Consensus        90 ~~~~   93 (365)
                      ....
T Consensus        85 ~~~~   88 (112)
T d1sq2n_          85 GVAG   88 (112)
T ss_dssp             CBTT
T ss_pred             ecCC
Confidence            6543

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.08  E-value=1.7e-05  Score=56.24  Aligned_cols=70  Identities=10%  Similarity=0.091  Sum_probs=45.9

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCC---------C-----Cce--eEeeCCCEEEEEEcCCCcccCeEEE
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPR---------P-----LTS--YSIQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~---------~-----~~~--~~~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      +.+|++++|.|..... .... +.|++........         .     .+.  .....+....|.|.+++.+|+|.|.
T Consensus        12 v~~G~~VtL~C~~~~~~~~~~-~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Yy   90 (114)
T d2ak4d1          12 VVEKEDVTLDCVYETRDTTYY-LFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYF   90 (114)
T ss_dssp             EETTCCEEECCEEECSCSSCE-EEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EeCCCCEEEEEEEcCCCcCcc-EEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCce
Confidence            8899999999987543 3344 8898732111000         0     000  1123345678999999999999999


Q ss_pred             EEEEcCCc
Q psy3823         299 CWARNEQG  306 (365)
Q Consensus       299 C~a~n~~g  306 (365)
                      |.+....+
T Consensus        91 Ca~~~~~~   98 (114)
T d2ak4d1          91 CALSGFYN   98 (114)
T ss_dssp             EEEECSBT
T ss_pred             EeCCCCCC
Confidence            98876544

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1e-05  Score=57.72  Aligned_cols=85  Identities=11%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             eeeecCceEEEEEEEeee---CCCceeEEEeCCCCC-------------CCCCCceeE--eeCCCEEEEEEcCCCcccCe
Q psy3823         234 YGALRNEQVLVSCTVDAN---PQAQYFTWAFNNSDT-------------APRPLTSYS--IQDGSTSVARYTPTSELEYG  295 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~---p~~~~~~W~~~~~~~-------------~~~~~~~~~--~~~~~~s~l~i~~v~~~d~G  295 (365)
                      +.+.+|++++|.|.....   ... .+.|++.....             .....+..+  ........|.|.+++.+|+|
T Consensus         9 V~~~~G~svtL~C~y~~~~~~~~~-~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG   87 (116)
T d1xeda_           9 VNSVEGNSVSITCYYPPTSVNRHT-RKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSG   87 (116)
T ss_dssp             EEEETTCCEEEEEECCCCHHHHHS-CEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEECCCCCccce-eEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCE
Confidence            347899999999987432   122 37787642111             111111211  33344567999999999999


Q ss_pred             EEEEEEEcCCccceecEEEEEEcC
Q psy3823         296 TLLCWARNEQGSQRTPCTFHVVKA  319 (365)
Q Consensus       296 ~Y~C~a~n~~g~~~~~~~l~v~~~  319 (365)
                      .|.|.+..........+.|.|...
T Consensus        88 ~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          88 RYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             EEEEEESCGGGCCEEEEEEEEECC
T ss_pred             EEEEEEEcCCCCceEeEEEEEECC
Confidence            999998755444455667777643

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.07  E-value=3.9e-05  Score=54.03  Aligned_cols=71  Identities=17%  Similarity=0.285  Sum_probs=46.8

Q ss_pred             CceEEEEecCCcEEEEEEeCCC-----CCcceEEEEeCCCc----C-C--------CCCCceeEecCCeEEEEEEccCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDAN-----PQAQYFTWAFNNSG----T-A--------PRPLTSYSIQDGSTSVARYTPTSE   79 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~-----p~~~~v~W~~~~~~----~-l--------~~~~~~~~~~~~~~~~l~i~~~~~   79 (365)
                      .+..+.+.+|++++|.|...+.     ... .+.||+....    . +        ................|.|.+++.
T Consensus         7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~-~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           7 AAPSVPVTPGESVSISCRSSKSLLHSNGNT-YLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCBCTTSCB-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             cCCEEEECCCCCEEEEEEECCCCccCCCCc-eeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            3557888999999999984321     233 7899975322    0 0        001111223344566899999999


Q ss_pred             CCCeEEEEEE
Q psy3823          80 LEYGTLLCWA   89 (365)
Q Consensus        80 ~d~G~Y~C~a   89 (365)
                      +|++.|.|..
T Consensus        86 ~DsAvYyCa~   95 (112)
T d1mjul1          86 EDVGVYYCLQ   95 (112)
T ss_dssp             GGCEEEEEEE
T ss_pred             cCCceEEEEe
Confidence            9999999954

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.07  E-value=1.9e-05  Score=55.14  Aligned_cols=67  Identities=12%  Similarity=0.165  Sum_probs=47.2

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCC-------------CCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDT-------------APRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~-------------~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|+.++|.|......... +.|++.....             .....+.....++....|.|.+++.+|++.|.|.+.
T Consensus        12 ~~~G~svtl~C~~s~~~~~~-~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~   90 (106)
T d1a0ql1          12 ASLGGKVTITCKASQDIKKY-IGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCLQY   90 (106)
T ss_dssp             ECTTCCEEEEEEESSCCTTC-EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEC
T ss_pred             ECCCCCEEEEEEcCCCCCCC-eEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEEEe
Confidence            78999999999986655555 9999742111             001112223444567789999999999999999875


Q ss_pred             c
Q psy3823         303 N  303 (365)
Q Consensus       303 n  303 (365)
                      +
T Consensus        91 ~   91 (106)
T d1a0ql1          91 Y   91 (106)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.3e-06  Score=59.41  Aligned_cols=72  Identities=14%  Similarity=0.162  Sum_probs=45.9

Q ss_pred             eEEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCcC-C------CC----CC-----ceeE--ecCCeEEEEEEccCCC
Q psy3823          20 RIYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSGT-A------PR----PL-----TSYS--IQDGSTSVARYTPTSE   79 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~~-l------~~----~~-----~~~~--~~~~~~~~l~i~~~~~   79 (365)
                      ..+.+.+|++++|.|...+  .... .+.|+|..... .      ..    ..     +...  ........|.|.+++.
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~-~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~   85 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASS-QKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQV   85 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTS-CEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCC-EEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCc
Confidence            3467789999999998432  2334 78899853210 0      00    00     0011  1233445799999999


Q ss_pred             CCCeEEEEEEEeC
Q psy3823          80 LEYGTLLCWARNE   92 (365)
Q Consensus        80 ~d~G~Y~C~a~~~   92 (365)
                      +|+|.|.|.+...
T Consensus        86 ~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          86 EDSGLYQCVIYQP   98 (113)
T ss_dssp             GGCEEEEEEECCT
T ss_pred             ccCceEEEEEECC
Confidence            9999999987543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.06  E-value=1.8e-05  Score=56.09  Aligned_cols=85  Identities=12%  Similarity=0.100  Sum_probs=53.4

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC----CCCC--------cee-EecCCeEEEEEEccCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA----PRPL--------TSY-SIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l----~~~~--------~~~-~~~~~~~~~l~i~~~~~~   80 (365)
                      .+....+.+|++++|.|... .... .+.||+....    .+    ....        ... .........|.|.+++.+
T Consensus         5 sP~~~~~~~G~svtl~C~~s-~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQN-LNHD-AMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKN   82 (114)
T ss_dssp             SCSEEEEETTCCEEECCEEC-SCCS-EEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSC
T ss_pred             cCCeEEEcCCCCEEEEEEEe-cCCC-cEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcC
Confidence            35678899999999999964 3445 8999985321    00    0000        001 112233447999999999


Q ss_pred             CCeEEEEEEEeCCCCCc---ccEEEEE
Q psy3823          81 EYGTLLCWARNEQGNQR---TPCTFHV  104 (365)
Q Consensus        81 d~G~Y~C~a~~~~~~~~---~~~~l~V  104 (365)
                      |+|.|.|.+....+...   .-..|+|
T Consensus        83 DSa~YyCa~~~~~~~~~~FG~GT~LtV  109 (114)
T d1ogae1          83 PTAFYLCASSSRSSYEQYFGPGTRLTV  109 (114)
T ss_dssp             CCEEEEEEEESSTTSCCEECCCEEEEE
T ss_pred             CceeEEEeeccCCCCccEECCCEEEEE
Confidence            99999998765433322   3455555

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.06  E-value=1.1e-05  Score=57.29  Aligned_cols=71  Identities=11%  Similarity=0.124  Sum_probs=47.5

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------------CCCceeE--eeCCCEEEEEEcCCCcccCeEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------------RPLTSYS--IQDGSTSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------------~~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~C  299 (365)
                      .+.+|+.++|.|......... +.|++.......             .......  ........|.|.+++.+|+|.|.|
T Consensus        12 ~v~~G~~vtL~C~~~~~~~~~-i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyC   90 (115)
T d1lp9e1          12 TLTEGLPVMLNCTYQSTYSPF-LFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYC   90 (115)
T ss_dssp             EEETTSCEEECEEEECSSSCC-EEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEE
T ss_pred             EECCCCCEEEEEEEeCCCcCC-eeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceE
Confidence            388999999999997766666 999874211100             0111111  222334569999999999999999


Q ss_pred             EEEcCCc
Q psy3823         300 WARNEQG  306 (365)
Q Consensus       300 ~a~n~~g  306 (365)
                      .+....+
T Consensus        91 a~~~~~~   97 (115)
T d1lp9e1          91 ALFLASS   97 (115)
T ss_dssp             EEEECSS
T ss_pred             EEEcCCC
Confidence            8865443

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.05  E-value=9.2e-06  Score=55.83  Aligned_cols=69  Identities=13%  Similarity=0.120  Sum_probs=46.1

Q ss_pred             ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      ..++..+|.|.+.++ |....+.|.++|........  ......+++.+.+....+..++...|+|.|.+..
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            346667899999986 44447999998875533221  1223556777777777778888889999999864

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.5e-05  Score=55.57  Aligned_cols=82  Identities=15%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC---------CceEEeeceEEEeeec
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS---------AGRIITNQTLVLQSVT  183 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~---------~~~~~~~~~l~i~~~~  183 (365)
                      ..+|.+.+.+.+    .....++.++|.|.+.+ +|....|.|.+||..+.....         .+.....+.|.|....
T Consensus         2 ~~~P~V~v~~p~----~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~   77 (105)
T d1fp5a2           2 RAAPEVYAFATP----EWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAE   77 (105)
T ss_dssp             CBCCEEEEEECC----CCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHH
T ss_pred             CCCCEEEEECCC----hHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHH
Confidence            346776655432    12335678999999997 566677999999988753210         1111223456666655


Q ss_pred             CCCCeEEEEEEEcCCC
Q psy3823         184 RHSGGLYACSAINSQG  199 (365)
Q Consensus       184 ~~d~G~Y~C~~~~~~~  199 (365)
                      .+....|+|.+.+...
T Consensus        78 W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          78 WEQKDEFICRAVHEAA   93 (105)
T ss_dssp             HTTGGGEEEEEECTTS
T ss_pred             cCCCCEEEEEEEECCC
Confidence            5666789999998654

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=6.1e-06  Score=56.96  Aligned_cols=70  Identities=16%  Similarity=0.092  Sum_probs=48.0

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCC-CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      +..|+..+|.|.+.|+ |....+.|.+||....... .......+++.+......+..++.+.|+|.+.+..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCC
Confidence            4568889999999986 5444799999987543211 12233556665555555556677889999999863

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.04  E-value=3.2e-05  Score=54.71  Aligned_cols=72  Identities=18%  Similarity=0.125  Sum_probs=47.8

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeC--CCc--CC------------CCCCce-eEecCCeEEEEEEccCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFN--NSG--TA------------PRPLTS-YSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~--~~~--~l------------~~~~~~-~~~~~~~~~~l~i~~~~~~d   81 (365)
                      +....+.+|++++|.|...+ ... .+.|||-  +..  .+            ...... ..........|.|.+++.+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPIS-GHR-SVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGD   83 (113)
T ss_dssp             CSEEEEETTCCEEEEEECST-TCC-EEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCC-EEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccc
Confidence            45678899999999999433 345 7899983  221  00            000111 12233345689999999999


Q ss_pred             CeEEEEEEEeC
Q psy3823          82 YGTLLCWARNE   92 (365)
Q Consensus        82 ~G~Y~C~a~~~   92 (365)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (113)
T d2ntsp1          84 SALYLCASSLA   94 (113)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeeeeeeeCC
Confidence            99999988754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3e-06  Score=59.38  Aligned_cols=73  Identities=10%  Similarity=0.017  Sum_probs=46.5

Q ss_pred             EEEecCCcEEEEEEeCCCCCc---ceEEEEeCCCcCCC---CCC---------ceeEecCCeEEEEEEccCCCCCCeEEE
Q psy3823          22 YGALRNEQVLVSCTVDANPQA---QYFTWAFNNSGTAP---RPL---------TSYSIQDGSTSVARYTPTSELEYGTLL   86 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~---~~v~W~~~~~~~l~---~~~---------~~~~~~~~~~~~l~i~~~~~~d~G~Y~   86 (365)
                      +.+..|+.++|.|........   ..+.|.+++.. +-   .+.         .......+ ..+|.|.+++.+|+|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~-v~~~~~~~~~~~~~~~~r~~~~~~g-~~sL~I~~v~~~D~G~Y~   81 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKM-VLTMMSGDMNIWPEYKNRTIFDITN-NLSIVILALRPSDEGTYE   81 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEE-EEEEETTEEEECHHHHTTEEEESTT-TTEEEECSCCGGGCEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceE-EEEEEeccceeecceeeeeeeccCC-cEEEEECcCChHHCeEEE
Confidence            457889999999984332221   26788887654 21   000         00111112 237999999999999999


Q ss_pred             EEEEeCCCCC
Q psy3823          87 CWARNEQGNQ   96 (365)
Q Consensus        87 C~a~~~~~~~   96 (365)
                      |.+.+..+..
T Consensus        82 C~V~~~~~~~   91 (105)
T d1dr9a1          82 CVVLKYEKDA   91 (105)
T ss_dssp             EEEEECCTTS
T ss_pred             EEEEeCCCCC
Confidence            9997654444

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.03  E-value=3.5e-06  Score=59.13  Aligned_cols=71  Identities=14%  Similarity=0.229  Sum_probs=47.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc-----C--------CCCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-----T--------APRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~-----~--------l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|........ .+.||+....     +        .................|.|.+++.+|+|.|
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINN-FLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATY   86 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCC-CeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcE
Confidence            455678999999999996555565 7999985321     0        0000111112233456899999999999999


Q ss_pred             EEEEE
Q psy3823          86 LCWAR   90 (365)
Q Consensus        86 ~C~a~   90 (365)
                      .|.+.
T Consensus        87 yCa~~   91 (107)
T d3cx5k1          87 FCQHH   91 (107)
T ss_dssp             EEEEC
T ss_pred             EeeeC
Confidence            99754

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=5.6e-06  Score=56.73  Aligned_cols=90  Identities=18%  Similarity=0.302  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeC-CCCceEEeeceEEEeeecCCCCeEEEEE
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNN-ASAGRIITNQTLVLQSVTRHSGGLYACS  193 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  193 (365)
                      .+|.+.+.+..     .+..|++|+|.|....  ....+.++++|...... ...........+.|.+++..|+|.|+|.
T Consensus         3 PkP~Lsa~Ps~-----~V~~G~~VTL~C~~~~--~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~   75 (96)
T d1ugna1           3 PKPTLWAEPGS-----VITQGSPVTLRCQGGQ--ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCY   75 (96)
T ss_dssp             CCCEEEEESCS-----EEETTCCEEEEEECCT--TCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeECCC-----ccCCCCcEEEEEeCCC--CCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEE
Confidence            47888777653     6789999999998542  22337788877533210 0000001135799999999999999998


Q ss_pred             EEcCC-C-CCCcccEEEEEe
Q psy3823         194 AINSQ-G-EGGSTPFDLNIN  211 (365)
Q Consensus       194 ~~~~~-~-~~~s~~~~l~v~  211 (365)
                      ..... . ...|+.+.|.|.
T Consensus        76 y~~~~~~~S~~Sd~leL~Vt   95 (96)
T d1ugna1          76 YGSDTAGRSESSDPLELVVT   95 (96)
T ss_dssp             EEETTTEECCCCCCEEEEEE
T ss_pred             EeCCCCCccccCCCEEEEEe
Confidence            76432 1 344455555553

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=5.1e-06  Score=59.84  Aligned_cols=86  Identities=8%  Similarity=0.021  Sum_probs=51.2

Q ss_pred             ceEEEEecCCcEEEEEEeC----CCC--CcceEEEEeCCCcC-----C---------CCC--CceeEec--CCeEEEEEE
Q psy3823          19 QRIYGALRNEQVLVSCTVD----ANP--QAQYFTWAFNNSGT-----A---------PRP--LTSYSIQ--DGSTSVARY   74 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~----~~p--~~~~v~W~~~~~~~-----l---------~~~--~~~~~~~--~~~~~~l~i   74 (365)
                      +..+.+.+|+.|+|.|...    ...  ....+.|++.....     +         ...  .+.....  .....+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            4567899999999999842    111  21267898864320     0         000  0111111  122347999


Q ss_pred             ccCCCCCCeEEEEEEEeCCCC---CcccEEEEE
Q psy3823          75 TPTSELEYGTLLCWARNEQGN---QRTPCTFHV  104 (365)
Q Consensus        75 ~~~~~~d~G~Y~C~a~~~~~~---~~~~~~l~V  104 (365)
                      .+++.+|+|.|.|.+......   ....++|.|
T Consensus        88 ~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V  120 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV  120 (121)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEECTTSCEEEEE
T ss_pred             CCCChHHCEEEEEEEEeCCcceeeeCCCEEEEE
Confidence            999999999999998754332   125566665

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.03  E-value=1.6e-05  Score=55.43  Aligned_cols=67  Identities=18%  Similarity=0.297  Sum_probs=46.5

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|++++|.|......... +.|++.......             ...++.....+....|.|.+++.+|+|.|.|.+.
T Consensus        13 v~~G~svtl~C~~s~~~~~~-~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (106)
T d1i8ka_          13 VATGEKVTIRCMTSTDIDDD-MNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQS   91 (106)
T ss_dssp             CCTTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ECCCCCEEEEEEeCCCCCcc-EEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEecC
Confidence            78999999999886555555 999964211110             1111222334566789999999999999999875


Q ss_pred             c
Q psy3823         303 N  303 (365)
Q Consensus       303 n  303 (365)
                      +
T Consensus        92 ~   92 (106)
T d1i8ka_          92 F   92 (106)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.03  E-value=2.6e-05  Score=54.26  Aligned_cols=69  Identities=19%  Similarity=0.336  Sum_probs=46.7

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCC--------------CCCceeEecCCeEEEEEEccCCCCCCeE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAP--------------RPLTSYSIQDGSTSVARYTPTSELEYGT   84 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~--------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~   84 (365)
                      +..+.+.+|++++|.|.... ... .+.||+.... -.              ...............|.|.+++.+|+|.
T Consensus         7 P~~l~~~~G~~vtl~C~~s~-~~~-~~~WYrQ~~g-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   83 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSASS-SVN-YMYWYQQKSG-TSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAAT   83 (104)
T ss_dssp             SSEEEECTTCCEEEEEEESS-CCS-CCEEEEECTT-SCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEeCC-CCC-ccEEEEeecc-CceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCe
Confidence            56678999999999999543 234 6799985321 00              0111112233455689999999999999


Q ss_pred             EEEEEE
Q psy3823          85 LLCWAR   90 (365)
Q Consensus        85 Y~C~a~   90 (365)
                      |.|.+.
T Consensus        84 YyCa~~   89 (104)
T d1yqvl1          84 YYCQQW   89 (104)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999753

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=8.7e-06  Score=56.15  Aligned_cols=70  Identities=14%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc-eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT-SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      ...|+.++|.|.+.|+ |....+.|.++|......... .....+++.+......+..++.+.|+|.+.+..
T Consensus        15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCC
Confidence            3467889999999986 444479999998754322211 123456665555555556677789999998863

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.02  E-value=1.9e-05  Score=53.84  Aligned_cols=68  Identities=13%  Similarity=-0.010  Sum_probs=47.2

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeC
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTS-YSIQDGSTSVARYTPTSELEYGTLLCWARNE   92 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~   92 (365)
                      ..|..|++|+|.|... .... .+.++|++.. ....... ..........|.|.+++..|+|+|+|.....
T Consensus        11 ~~V~~G~~VTl~C~~~-~~~~-~f~L~keg~~-~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          11 PLVKSEETVILQCWSD-VMFE-HFLLHREGMF-NDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             SEEETTCCEEEEEEES-SCCS-EEEEEEESSS-CEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CccCCCCcEEEEECCC-CCCC-EEEEEECCCc-CCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            3467899999999853 3444 8999998764 2211111 1123344557999999999999999987654

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.1e-05  Score=56.87  Aligned_cols=74  Identities=11%  Similarity=0.042  Sum_probs=41.6

Q ss_pred             EEEEecCCcEEEEEEeCCCCC--cceEEE--EeCCCcCC----CC---------CCceeEecCCeEEEEEEccCCCCCCe
Q psy3823          21 IYGALRNEQVLVSCTVDANPQ--AQYFTW--AFNNSGTA----PR---------PLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~--~~~v~W--~~~~~~~l----~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      .+.+..|++++|+|.....+.  ...+.|  .++....+    ..         ....+........+|.|.+++.+|+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            456789999999998432221  113444  44332200    00         00001111111237999999999999


Q ss_pred             EEEEEEEeCCC
Q psy3823          84 TLLCWARNEQG   94 (365)
Q Consensus        84 ~Y~C~a~~~~~   94 (365)
                      .|.|.+.....
T Consensus        83 ~Y~C~V~~~~~   93 (110)
T d1ncna_          83 LYQCIIHHKKP   93 (110)
T ss_dssp             EEEEEEEEECS
T ss_pred             EEEEEEEecCC
Confidence            99999875443

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=1.4e-05  Score=56.15  Aligned_cols=73  Identities=12%  Similarity=0.162  Sum_probs=47.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC-C-cceEEEEeCCC---c-CC---------CCCCceeEecCCeEEEEEEccCCCCCCe
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP-Q-AQYFTWAFNNS---G-TA---------PRPLTSYSIQDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p-~-~~~v~W~~~~~---~-~l---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G   83 (365)
                      +..+.+.+|++++|.|...+.. . ...+.||+-..   . .+         ....+...........|.|.+++.+|+|
T Consensus         7 ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa   86 (110)
T d1oaql_           7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEA   86 (110)
T ss_dssp             CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccE
Confidence            3467789999999999954322 1 11588998321   1 00         0011112223345678999999999999


Q ss_pred             EEEEEEEe
Q psy3823          84 TLLCWARN   91 (365)
Q Consensus        84 ~Y~C~a~~   91 (365)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (110)
T d1oaql_          87 IYFCALWY   94 (110)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEccc
Confidence            99998764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=1.3e-05  Score=57.17  Aligned_cols=71  Identities=17%  Similarity=0.292  Sum_probs=48.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC---------CCCCceeEecCCeEEEEEEccCCCCCCeEE
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA---------PRPLTSYSIQDGSTSVARYTPTSELEYGTL   85 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l---------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   85 (365)
                      +..+.+.+|++++|.|.....-.. .+.||+....    .+         ................|.|.+++.+|+|.|
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavY   86 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATY   86 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcc-eeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEE
Confidence            456778999999999995544445 7999985321    00         001111222334456899999999999999


Q ss_pred             EEEEE
Q psy3823          86 LCWAR   90 (365)
Q Consensus        86 ~C~a~   90 (365)
                      .|.+.
T Consensus        87 yCa~~   91 (119)
T d1f3rb2          87 FCYQY   91 (119)
T ss_dssp             EEEEE
T ss_pred             Eeecc
Confidence            99765

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.01  E-value=1.7e-05  Score=54.17  Aligned_cols=77  Identities=14%  Similarity=0.086  Sum_probs=49.0

Q ss_pred             CceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEc
Q psy3823         224 PVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN  303 (365)
Q Consensus       224 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n  303 (365)
                      |.+...+.. . +..|++++|.|... ..... +.++++|...............+....+.|.+++.+|+|.|+|....
T Consensus         3 PsLsa~P~~-~-V~~G~~VTl~C~~~-~~~~~-f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1           3 PSLLAHPGP-L-VKSEETVILQCWSD-VMFEH-FLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             CEEEEESCS-E-EETTCCEEEEEEES-SCCSE-EEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CEEEeeCCC-c-cCCCCcEEEEECCC-CCCCE-EEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEc
Confidence            444443322 2 88999999999964 23344 88888775332111111112223345699999999999999998764


Q ss_pred             C
Q psy3823         304 E  304 (365)
Q Consensus       304 ~  304 (365)
                      .
T Consensus        79 ~   79 (96)
T d1nkra1          79 T   79 (96)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.01  E-value=3e-05  Score=54.52  Aligned_cols=72  Identities=15%  Similarity=0.232  Sum_probs=46.5

Q ss_pred             ceEEEEecCCcEEEEEEeCC-CCC--cceEEEEeCCCcC-C----C--------CCCceeEecCCeEEEEEEccCCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDA-NPQ--AQYFTWAFNNSGT-A----P--------RPLTSYSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~-~p~--~~~v~W~~~~~~~-l----~--------~~~~~~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      +..+.+.+|++++|.|.... ...  ...+.||+..... .    .        ...+......+....|.|.+++.+|+
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDA   87 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCC
Confidence            56788999999999998432 111  1158999853210 0    0        01111222334556899999999999


Q ss_pred             eEEEEEEE
Q psy3823          83 GTLLCWAR   90 (365)
Q Consensus        83 G~Y~C~a~   90 (365)
                      |.|.|.+.
T Consensus        88 A~YyCa~~   95 (111)
T d2gsia1          88 ATYYCSHI   95 (111)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEEC
Confidence            99999765

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.01  E-value=1.4e-05  Score=54.79  Aligned_cols=71  Identities=15%  Similarity=0.091  Sum_probs=46.8

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc--eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT--SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      ...++.++|.|.+.++ |....+.|.+||.........  .....+++.+......+..++...|+|.+.+...
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCC
Confidence            4457789999999986 544479999998754332222  2234456655444444555667789999998644

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.00  E-value=2e-05  Score=55.57  Aligned_cols=73  Identities=12%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             ceEEEEecCCcEEEEEEeCC-CCC--cceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDA-NPQ--AQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~-~p~--~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      +..+.+.+|++++|.|.... .+.  ...+.||+..... .            ..........+.....|.|.+++.+|+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence            56677899999999998432 211  1159999843210 0            001111233445667899999999999


Q ss_pred             eEEEEEEEe
Q psy3823          83 GTLLCWARN   91 (365)
Q Consensus        83 G~Y~C~a~~   91 (365)
                      |.|.|.+..
T Consensus        88 a~YyCa~~~   96 (111)
T d1j05a_          88 ATYYCQQTN   96 (111)
T ss_dssp             EEEEEEECS
T ss_pred             ccEEEeecC
Confidence            999997653

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.2e-05  Score=56.56  Aligned_cols=82  Identities=11%  Similarity=0.191  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC------------CceEEeeceEEEee
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS------------AGRIITNQTLVLQS  181 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~------------~~~~~~~~~l~i~~  181 (365)
                      .+|.+.+.+.+   ...+..++.++|.|.+.+ +|....|.|++||..+.....            .+.....+.|.|..
T Consensus         3 ~~P~V~~~~p~---~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~   79 (108)
T d1ow0a2           3 FRPEVHLLPPP---SEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAA   79 (108)
T ss_dssp             CCCEEEEECCC---TTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEH
T ss_pred             CCCEEEEECCC---HHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcH
Confidence            47777765443   124556889999999997 566667999999998754211            11112234566665


Q ss_pred             ecCCCCeEEEEEEEcCCC
Q psy3823         182 VTRHSGGLYACSAINSQG  199 (365)
Q Consensus       182 ~~~~d~G~Y~C~~~~~~~  199 (365)
                      -..+....|+|++.+...
T Consensus        80 ~~w~~g~~ytC~V~H~sl   97 (108)
T d1ow0a2          80 EDWKKGDTFSCMVGHEAL   97 (108)
T ss_dssp             HHHHHTCCEEEEEECTTC
T ss_pred             HHhCCCCEEEEEEEeCCC
Confidence            555567789999998654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.99  E-value=3.1e-05  Score=55.00  Aligned_cols=72  Identities=13%  Similarity=0.159  Sum_probs=47.0

Q ss_pred             eeecCceEEEEEEEee-eCCCceeEEEeCCCCCC--------------CCCCceeE--eeCCCEEEEEEcCCCcccCeEE
Q psy3823         235 GALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTA--------------PRPLTSYS--IQDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~--------------~~~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      .+.+|++++|.|.... ..... +.|++......              ....+...  ........|.|.+++.+|+|.|
T Consensus        10 ~~~~G~~Vtl~C~~~~~~~~~~-i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   88 (115)
T d1fo0a_          10 SVMEKTTVTMDCVYETQDSSYF-LFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVY   88 (115)
T ss_dssp             EEETTCCEEECCEECCCCSSCE-EEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             EEcCCCCEEEEEEEcCCCCCCC-CEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccc
Confidence            3889999999998754 33344 88997321100              00011111  2234567799999999999999


Q ss_pred             EEEEEcCCcc
Q psy3823         298 LCWARNEQGS  307 (365)
Q Consensus       298 ~C~a~n~~g~  307 (365)
                      .|.+....+.
T Consensus        89 yCa~~~~~~~   98 (115)
T d1fo0a_          89 FCAMRGDYGG   98 (115)
T ss_dssp             EEEEECCCTT
T ss_pred             cceeecCCCC
Confidence            9998765443

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.99  E-value=2e-05  Score=55.14  Aligned_cols=67  Identities=13%  Similarity=0.209  Sum_probs=46.9

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCC-------------CCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA-------------PRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~-------------~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|++++|.|...+..... +.|++......             ....++.....+....|.|.+++.+|+|.|.|.+.
T Consensus        13 v~~G~svtl~C~~s~~~~~~-~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1ospl1          13 VSLGDRVTITCKASEDIYSR-LAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQQY   91 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEEEC
T ss_pred             ECCCCCEEEEEecCCCcccc-cEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEeec
Confidence            78999999999987655555 99998422111             11112222334556789999999999999999875


Q ss_pred             c
Q psy3823         303 N  303 (365)
Q Consensus       303 n  303 (365)
                      .
T Consensus        92 ~   92 (107)
T d1ospl1          92 W   92 (107)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.99  E-value=3e-05  Score=53.40  Aligned_cols=78  Identities=19%  Similarity=0.273  Sum_probs=49.5

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC--CceEE------eeceEEEeeecC
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS--AGRII------TNQTLVLQSVTR  184 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~--~~~~~------~~~~l~i~~~~~  184 (365)
                      ..+|.+.+.+..     ....|+..+|.|.+.| +|....++|.+||..+.....  .....      ..+.|.+   ..
T Consensus         3 ~v~P~V~v~~~~-----~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~   74 (101)
T d1fnga1           3 NVAPEVTVLSRS-----PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LP   74 (101)
T ss_dssp             CBCCEEEEEESS-----CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CC
T ss_pred             CcCCeEEEeCCC-----cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cC
Confidence            347877765432     2446788899999997 577777999999988753111  00111      1223433   33


Q ss_pred             CCCeEEEEEEEcCCC
Q psy3823         185 HSGGLYACSAINSQG  199 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~  199 (365)
                      .+...|+|.+.+..-
T Consensus        75 ~~~~~ytC~V~H~sl   89 (101)
T d1fnga1          75 STDDFYDCEVDHWGL   89 (101)
T ss_dssp             CTTCCEEEEEECTTC
T ss_pred             CCCCEEEEEEEECCC
Confidence            455689999998753

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.7e-05  Score=53.95  Aligned_cols=82  Identities=16%  Similarity=0.297  Sum_probs=53.0

Q ss_pred             CCCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC--------CceEEeeceEEEeeec
Q psy3823         113 PVDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS--------AGRIITNQTLVLQSVT  183 (365)
Q Consensus       113 ~~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~--------~~~~~~~~~l~i~~~~  183 (365)
                      |..+|.+.+.+.+    .....++.++|.|.+.+ +|....|.|.+||..+.....        .+.....+.|.|....
T Consensus         2 P~~~P~V~l~~ps----~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~   77 (102)
T d1q0xl2           2 PKSSPTVTLFPPS----SEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARA   77 (102)
T ss_dssp             CCBCCEEEEECCC----HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHH
T ss_pred             cCCCCEEEEECCC----HHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHH
Confidence            3457777765432    12224567999999997 466677999999988753111        1111223456666666


Q ss_pred             CCCCeEEEEEEEcCC
Q psy3823         184 RHSGGLYACSAINSQ  198 (365)
Q Consensus       184 ~~d~G~Y~C~~~~~~  198 (365)
                      .+....|+|++.+..
T Consensus        78 w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          78 WERHSSYSCQVTHEG   92 (102)
T ss_dssp             HTTCCEEEEEEEETT
T ss_pred             hCCCCEEEEEEEECC
Confidence            667789999999864

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.98  E-value=1.5e-05  Score=54.78  Aligned_cols=70  Identities=14%  Similarity=0.107  Sum_probs=47.1

Q ss_pred             EecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce---eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          24 ALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        24 v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      +..|+.++|.|. .+..|....++|++||.. +..+...   ....+++........+..++.+.|+|.+.+..-
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~-v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl   87 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKS-VADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWGL   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSB-CCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTTS
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCee-ccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECCC
Confidence            356899999999 555676669999999988 6543221   223445444444444455677889999998653

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.98  E-value=4e-05  Score=54.42  Aligned_cols=71  Identities=13%  Similarity=0.090  Sum_probs=46.2

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeC--CCCCC--------------CCCCceeE--eeCCCEEEEEEcCCCcccCeE
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFN--NSDTA--------------PRPLTSYS--IQDGSTSVARYTPTSELEYGT  296 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~--~~~~~--------------~~~~~~~~--~~~~~~s~l~i~~v~~~d~G~  296 (365)
                      +.+|+.++|.|..... .... +.|++.  |....              ....++..  ........|.|.+++.+|+|.
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~-i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~   90 (116)
T d1tvda_          12 VASGSEVVLLCTYDTVYSNPD-LFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSAT   90 (116)
T ss_dssp             EETTCCEEECCEEECCSSSCC-EEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEE
T ss_pred             EcCCCCEEEEEEEcCCccCCc-EEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccccccc
Confidence            8899999999998643 4455 999872  11100              00011111  122344679999999999999


Q ss_pred             EEEEEEcCCcc
Q psy3823         297 LLCWARNEQGS  307 (365)
Q Consensus       297 Y~C~a~n~~g~  307 (365)
                      |.|.+....+.
T Consensus        91 YyCa~~~~~~~  101 (116)
T d1tvda_          91 YYCAFTLPPPT  101 (116)
T ss_dssp             EEEEEECTTTT
T ss_pred             ceeeEecCCCC
Confidence            99988765443

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.98  E-value=2.7e-05  Score=53.53  Aligned_cols=66  Identities=18%  Similarity=0.238  Sum_probs=45.2

Q ss_pred             EEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeC
Q psy3823          23 GALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE   92 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~   92 (365)
                      .|..|++|+|.|... .+.. .+.|+|++.. ...... ..........+.|..+...|+|+|+|.....
T Consensus        16 ~V~~G~~VTL~C~~~-~~~~-~f~L~k~g~~-~~~~~~-~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          16 TVLAGENVTLSCSSR-SSYD-MYHLSREGEA-HERRLP-AGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             EECTTCEEEEEEEES-SCCS-EEEEEETTCS-SCEEEE-CEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             cccCCCeEEEEECCC-CCcc-EEEEEECCCc-cccEEE-ccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            468899999999854 3455 8999999865 322111 1122333346777888888999999987643

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.97  E-value=3.5e-05  Score=54.43  Aligned_cols=74  Identities=12%  Similarity=0.096  Sum_probs=48.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC----C---------CCCceeEecCCeEEEEEEccCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA----P---------RPLTSYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l----~---------~~~~~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      ++...+.+|++++|.|.... ... .+.|||....    .+    .         ...............|.|.+++.+|
T Consensus         8 P~~~~~~~G~~v~l~C~~~~-~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1           8 PRHIIKEKGGRSVLTCIPIS-GHS-NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             CSEEEEETTCCCEEEEECCT-TCC-EEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             CCEEEEeCCCCEEEEEEeCC-CCC-EEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            55677899999999998533 234 7999985422    00    0         0001111233344589999999999


Q ss_pred             CeEEEEEEEeCCC
Q psy3823          82 YGTLLCWARNEQG   94 (365)
Q Consensus        82 ~G~Y~C~a~~~~~   94 (365)
                      +|.|.|.+....+
T Consensus        86 sa~YyCa~~~~~~   98 (113)
T d1nfdb1          86 SAMYFCASSLRWG   98 (113)
T ss_dssp             CEEECEEEESSSC
T ss_pred             ceeEEEEeecCCC
Confidence            9999998764433

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.97  E-value=2.4e-05  Score=54.71  Aligned_cols=67  Identities=16%  Similarity=0.316  Sum_probs=47.4

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|++++|.|......... +.|++.......             ...+.....++....|.|.+++.+|+|.|.|.+.
T Consensus        13 v~~G~~vtL~C~~~~~~~~~-~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1j1pl_          13 VTPGNSVSLSCRASQSIGNN-LHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQA   91 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ECCCCCEEEEEEecCCCCcc-eEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEEcC
Confidence            88999999999986555555 999975321111             1112222445567789999999999999999775


Q ss_pred             c
Q psy3823         303 N  303 (365)
Q Consensus       303 n  303 (365)
                      +
T Consensus        92 ~   92 (107)
T d1j1pl_          92 N   92 (107)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.97  E-value=5.8e-06  Score=58.34  Aligned_cols=74  Identities=9%  Similarity=0.149  Sum_probs=48.1

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C------CCC------CceeE--ecCCeEEEEEEccCCCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A------PRP------LTSYS--IQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l------~~~------~~~~~--~~~~~~~~l~i~~~~~~d~   82 (365)
                      .+..+.+.+|++++|.|........ .+.|||..... +      ...      .....  ........|.|.+++.+|+
T Consensus         6 ~p~~~~~~~G~~vtl~C~~~~~~~~-~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Ds   84 (110)
T d1ac6a_           6 TEGQVALSEEDFLTIHCNYSASGYP-ALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDS   84 (110)
T ss_dssp             CCSEEEEETTEEEEECEEEECSSCC-EEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGC
T ss_pred             CCCeEEECCCCCEEEEEEecCCCCc-ceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCC
Confidence            3566789999999999984333344 79999843210 0      000      00011  1233455799999999999


Q ss_pred             eEEEEEEEeC
Q psy3823          83 GTLLCWARNE   92 (365)
Q Consensus        83 G~Y~C~a~~~   92 (365)
                      |.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (110)
T d1ac6a_          85 AVYYCALSGG   94 (110)
T ss_dssp             EEEEEEEEET
T ss_pred             cccceeecCC
Confidence            9999987643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.97  E-value=3.6e-05  Score=54.12  Aligned_cols=71  Identities=14%  Similarity=0.129  Sum_probs=47.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc-----CC---CCC---------CceeEecCCeEEEEEEccCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG-----TA---PRP---------LTSYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~-----~l---~~~---------~~~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      +....+.+|++++|.|...+ ... .+.|||-...     ++   ...         .............|.|.+++.+|
T Consensus         8 P~~~~~~~G~~vtl~C~~s~-~~~-~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTN-NHN-NMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQ   85 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESS-CCS-EEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEEcCCCCEEEEEEECC-CcC-cEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhh
Confidence            55777899999999998543 345 7999994221     00   000         00112233345689999999999


Q ss_pred             CeEEEEEEEe
Q psy3823          82 YGTLLCWARN   91 (365)
Q Consensus        82 ~G~Y~C~a~~   91 (365)
                      +|.|.|.+..
T Consensus        86 sa~YyCa~~~   95 (110)
T d2aq2a1          86 TSVYFCASGG   95 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeeCC
Confidence            9999998764

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.95  E-value=9.3e-05  Score=50.65  Aligned_cols=78  Identities=15%  Similarity=0.302  Sum_probs=49.2

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCC--CC------ceEEeeceEEEeeecC
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNA--SA------GRIITNQTLVLQSVTR  184 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~--~~------~~~~~~~~l~i~~~~~  184 (365)
                      ..+|.+.+.+..     ....|+..+|.|.+.| +|....|+|.+||.++....  ..      +.......|.+.   .
T Consensus         3 ~~~P~V~v~~~~-----~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~   74 (99)
T d1uvqa1           3 NEVPEVTVFSKS-----PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---P   74 (99)
T ss_dssp             CCCCEEEEEESS-----CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEC---C
T ss_pred             CcCCEEEEEcCC-----cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEc---C
Confidence            347777765432     2456788999999998 57777799999999885311  00      011112234433   4


Q ss_pred             CCCeEEEEEEEcCCC
Q psy3823         185 HSGGLYACSAINSQG  199 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~  199 (365)
                      .+...|+|++.+...
T Consensus        75 ~~~~~ytC~V~H~sl   89 (99)
T d1uvqa1          75 SADEIYDCKVEHWGL   89 (99)
T ss_dssp             CTTCCEEEEEECTTS
T ss_pred             CCCCEEEEEEEeCCC
Confidence            455689999998643

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.2e-05  Score=55.14  Aligned_cols=73  Identities=11%  Similarity=0.040  Sum_probs=47.7

Q ss_pred             CceEEEEecCCcEEEEEEeCC-C-CCcceEEEEeCCCcCCCC---------------CCce--eEecCCeEEEEEEccCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDA-N-PQAQYFTWAFNNSGTAPR---------------PLTS--YSIQDGSTSVARYTPTS   78 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~-~-p~~~~v~W~~~~~~~l~~---------------~~~~--~~~~~~~~~~l~i~~~~   78 (365)
                      |+..+.+.+|+.++|.|.... . +....+.|||.... ...               ....  ..........|.|.+++
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~   83 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADS-QVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR   83 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTT-CCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCC
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCC-CeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccc
Confidence            455677899999999999432 2 22225889986432 100               0000  11233456689999999


Q ss_pred             CCCCeEEEEEEEe
Q psy3823          79 ELEYGTLLCWARN   91 (365)
Q Consensus        79 ~~d~G~Y~C~a~~   91 (365)
                      .+|+|.|.|.+..
T Consensus        84 ~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          84 AMDTGLYICKVEL   96 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCCEEEEEeEec
Confidence            9999999998764

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.8e-05  Score=52.63  Aligned_cols=78  Identities=18%  Similarity=0.290  Sum_probs=49.2

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCce----EEeeceEEEeeecCCCCeE
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGR----IITNQTLVLQSVTRHSGGL  189 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~----~~~~~~l~i~~~~~~d~G~  189 (365)
                      +.+|.+.+.+.+     .+..|++|+|.|...  .....+.++++|...........    ......+.|.+++..|+|.
T Consensus         2 ~pkPsLsa~P~~-----~v~~G~~VTL~C~~~--~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~   74 (98)
T d1ugna2           2 YIKPTLSAQPSP-----VVNSGGNVTLQCDSQ--VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWW   74 (98)
T ss_dssp             SCCCEEEEESCS-----EEETTCCEEEEEECS--SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEE
T ss_pred             CCCCEEEeeCCC-----ccCCCCcEEEEeCCC--CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeE
Confidence            457888887654     688999999999854  23344777887764321100000    0112468999999999999


Q ss_pred             EEEEEEcCC
Q psy3823         190 YACSAINSQ  198 (365)
Q Consensus       190 Y~C~~~~~~  198 (365)
                      |+|......
T Consensus        75 Y~C~y~~~~   83 (98)
T d1ugna2          75 YRCYAYDSN   83 (98)
T ss_dssp             EEEEEECTT
T ss_pred             EEEeeEcCC
Confidence            999886443

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.95  E-value=4.3e-05  Score=54.01  Aligned_cols=73  Identities=16%  Similarity=0.189  Sum_probs=47.7

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC----CCC--------Cc-eeEecCCeEEEEEEccCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA----PRP--------LT-SYSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l----~~~--------~~-~~~~~~~~~~~l~i~~~~~~   80 (365)
                      .+..+.+.+|++++|.|.... ... .+.|||-...    ++    ...        .. ...........|.|.+++.+
T Consensus         6 sP~~~~~~~G~~v~l~C~~~~-~~~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   83 (113)
T d1j8he1           6 SSRYLVKRTGEKVFLECVQDM-DHE-NMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTN   83 (113)
T ss_dssp             SCSEEEEETTCCEEECEEESS-CCS-EEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEEcC-Ccc-EEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccC
Confidence            356677899999999998543 344 7889984211    00    000        01 11222334457999999999


Q ss_pred             CCeEEEEEEEeC
Q psy3823          81 EYGTLLCWARNE   92 (365)
Q Consensus        81 d~G~Y~C~a~~~   92 (365)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (113)
T d1j8he1          84 QTSMYLCASSST   95 (113)
T ss_dssp             GCEEEEEEEECT
T ss_pred             CcccEEeeEccC
Confidence            999999988753

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=2.9e-05  Score=54.21  Aligned_cols=67  Identities=13%  Similarity=0.308  Sum_probs=46.6

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+.+|+.++|.|...+..... +.|++........             ........++....|.|.+++.+|+|.|.|.+
T Consensus        11 ~~~~G~svtL~C~~s~~~~~~-~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   89 (106)
T d1lk3l1          11 TVSPGEKLTISCKASESVTSR-MHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQ   89 (106)
T ss_dssp             EECTTSCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EECCCCCEEEEEEeCCCCCcc-EEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccccc
Confidence            388999999999997655555 9999742211110             11122234456678999999999999999965


Q ss_pred             E
Q psy3823         302 R  302 (365)
Q Consensus       302 ~  302 (365)
                      .
T Consensus        90 ~   90 (106)
T d1lk3l1          90 S   90 (106)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.95  E-value=7.7e-05  Score=52.41  Aligned_cols=70  Identities=13%  Similarity=0.370  Sum_probs=46.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCC-----CCcceEEEEeCCCc-----C--------CCCCCceeEecCCeEEEEEEccCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDAN-----PQAQYFTWAFNNSG-----T--------APRPLTSYSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~-----p~~~~v~W~~~~~~-----~--------l~~~~~~~~~~~~~~~~l~i~~~~~~   80 (365)
                      +..+.+.+|++++|.|+....     ... .+.||+....     +        ............+....|.|.+++.+
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~-~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~e   86 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKT-FLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAE   86 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCB-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCc-ccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccC
Confidence            567889999999999984322     223 6889985321     0        00011112223345568999999999


Q ss_pred             CCeEEEEEE
Q psy3823          81 EYGTLLCWA   89 (365)
Q Consensus        81 d~G~Y~C~a   89 (365)
                      |+|.|.|..
T Consensus        87 DsAvYYC~~   95 (112)
T d1ncwl1          87 DLGVYYCWQ   95 (112)
T ss_dssp             GCEEEEEEE
T ss_pred             cCEeEEEEc
Confidence            999999954

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.94  E-value=1.7e-05  Score=56.35  Aligned_cols=70  Identities=7%  Similarity=0.117  Sum_probs=46.2

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC--------C------CceeE--eeCCCEEEEEEcCCCcccCeEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR--------P------LTSYS--IQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~--------~------~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      .+.+|+.++|.|......... +.|++-.......        .      .....  ........|.|.+++.+|+|.|.
T Consensus        11 ~~~~G~~vtl~C~~s~~~~~~-i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   89 (115)
T d1j8hd1          11 SVSEGALVLLRCNYSSSVPPY-LFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYF   89 (115)
T ss_dssp             EEETTSCEEECCEEECSSCCE-EEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEE
T ss_pred             EEcCCCCEEEEEEeCCCCcee-EEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccce
Confidence            388999999999987655555 9999732111000        0      01111  22233456999999999999999


Q ss_pred             EEEEcCC
Q psy3823         299 CWARNEQ  305 (365)
Q Consensus       299 C~a~n~~  305 (365)
                      |.+....
T Consensus        90 Ca~~~~~   96 (115)
T d1j8hd1          90 CAVSESP   96 (115)
T ss_dssp             EEEESST
T ss_pred             eeecCCC
Confidence            9997643

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=4.4e-05  Score=48.87  Aligned_cols=84  Identities=17%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             eEEEEecCCcEEEEEEeCC-CCCcceEEEEeCCCc---CCCCCCc--ee--EecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          20 RIYGALRNEQVLVSCTVDA-NPQAQYFTWAFNNSG---TAPRPLT--SY--SIQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~~~~---~l~~~~~--~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      ...++..|+.+.|.|.+.- --.| .++|-|-+..   -+.....  ..  ...+...-.|.+.++..+|.|.|+|.|.-
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RP-nVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf   89 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRP-NVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF   89 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCC-CEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             ceeeEecCCceEecCcchhhcCCC-CcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence            4567889999999999443 2355 8999775433   0221111  11  22455666899999999999999999987


Q ss_pred             CCCCCc-ccEEEEE
Q psy3823          92 EQGNQR-TPCTFHV  104 (365)
Q Consensus        92 ~~~~~~-~~~~l~V  104 (365)
                      ..+-.+ .++++.|
T Consensus        90 ~s~vieSHSvti~V  103 (104)
T d1xaua_          90 NSQVINSHSVTIHV  103 (104)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             ChhheecceEEEEe
Confidence            665443 6666655

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=4e-05  Score=54.07  Aligned_cols=71  Identities=11%  Similarity=0.186  Sum_probs=46.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCc----CC-----------CC--CCceeEecCCeEEEEEEccCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSG----TA-----------PR--PLTSYSIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~----~l-----------~~--~~~~~~~~~~~~~~l~i~~~~~~d   81 (365)
                      +....+.+|++++|.|.... ... .+.||+-...    .+           ..  ..............|.|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~s~-~~~-~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDM-NHE-YMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQ   83 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCS-EEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEEEC-Ccc-ceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHH
Confidence            45667899999999999543 345 8999984221    00           00  000011122333479999999999


Q ss_pred             CeEEEEEEEe
Q psy3823          82 YGTLLCWARN   91 (365)
Q Consensus        82 ~G~Y~C~a~~   91 (365)
                      +|.|.|.+..
T Consensus        84 savYyCA~~~   93 (112)
T d2bnub1          84 TSVYFCASSY   93 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEeecC
Confidence            9999998764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.94  E-value=6.8e-05  Score=52.84  Aligned_cols=71  Identities=15%  Similarity=0.302  Sum_probs=47.1

Q ss_pred             ceEEEEecCCcEEEEEEeCC-----CCCcceEEEEeCCCc----CC---------CCCCceeEecCCeEEEEEEccCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDA-----NPQAQYFTWAFNNSG----TA---------PRPLTSYSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~-----~p~~~~v~W~~~~~~----~l---------~~~~~~~~~~~~~~~~l~i~~~~~~   80 (365)
                      +....+.+|++++|.|...+     .... .+.||+....    ++         ...........+....|.|.+++.+
T Consensus         9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~-~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   87 (113)
T d1n4xl_           9 PLYLPVSLGDQASISCRSSQTIVHNNGNT-YLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   87 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCCTTSCC-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEeccccccCCCce-EeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcc
Confidence            45688899999999998432     1223 7999985321    00         0011112223455568999999999


Q ss_pred             CCeEEEEEEE
Q psy3823          81 EYGTLLCWAR   90 (365)
Q Consensus        81 d~G~Y~C~a~   90 (365)
                      |+|.|.|...
T Consensus        88 DsavYyCa~~   97 (113)
T d1n4xl_          88 DLGIYYCFQG   97 (113)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCEEEEEEEC
Confidence            9999999644

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.93  E-value=2.5e-05  Score=54.46  Aligned_cols=67  Identities=15%  Similarity=0.270  Sum_probs=46.6

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|++++|.|......... +.|++......+             ...+......+....|.|.+++.+|+|.|.|.+.
T Consensus        13 ~~~G~svtl~C~~s~~~~~~-~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   91 (107)
T d1c5cl1          13 ASLGERVSLTCRTSQEISGY-LSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCLQY   91 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTC-EEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             ECCCCCEEEEEEeCCCCCCC-EEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEecC
Confidence            78999999999987666666 999974321110             0111122334456789999999999999999876


Q ss_pred             c
Q psy3823         303 N  303 (365)
Q Consensus       303 n  303 (365)
                      +
T Consensus        92 ~   92 (107)
T d1c5cl1          92 A   92 (107)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=1.8e-05  Score=54.47  Aligned_cols=69  Identities=16%  Similarity=0.131  Sum_probs=48.1

Q ss_pred             ecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCcee--EecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          25 LRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSY--SIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        25 ~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ..|+.++|.|. .+..|....++|++|+.. +.......  ...+++.+......+..++.+.|+|.+.+..-
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~-~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl   87 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKK-IPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSM   87 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEE-CTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCee-cCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCCC
Confidence            46888999999 445677669999999987 65543322  23455544444455566677899999998653

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=4.5e-05  Score=53.33  Aligned_cols=84  Identities=14%  Similarity=0.223  Sum_probs=52.4

Q ss_pred             eEEEEecCCcEEEEEEeCC--CCCcceEEEEeCCCc-----CCC--CCC---------ceeEe--cCCeEEEEEEccCCC
Q psy3823          20 RIYGALRNEQVLVSCTVDA--NPQAQYFTWAFNNSG-----TAP--RPL---------TSYSI--QDGSTSVARYTPTSE   79 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~--~p~~~~v~W~~~~~~-----~l~--~~~---------~~~~~--~~~~~~~l~i~~~~~   79 (365)
                      ....+.+|++++|.|...+  .... .+.|+|....     ++.  ...         +....  .....-.|+|.+++.
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~-~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~   81 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANS-QKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQV   81 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTS-EEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCC-cEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECcccc
Confidence            3456899999999999543  2344 7889984321     010  000         01111  234556799999999


Q ss_pred             CCCeEEEEEEEeCCCCCc---ccEEEEE
Q psy3823          80 LEYGTLLCWARNEQGNQR---TPCTFHV  104 (365)
Q Consensus        80 ~d~G~Y~C~a~~~~~~~~---~~~~l~V  104 (365)
                      +|+|.|.|..........   ..++|.|
T Consensus        82 eDsa~YyCa~~~~~~~~~~~~~~~~L~V  109 (110)
T d1u9ka_          82 TDSGLYRCVIYHPPNDPVVLFHPVRLVV  109 (110)
T ss_dssp             GGCEEEEEEEECTTSCCEECSCCEEEEE
T ss_pred             CCCEEEEEEEeCCCCCCEEEECCEEEEE
Confidence            999999998765443322   4566655

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.5e-05  Score=52.44  Aligned_cols=77  Identities=19%  Similarity=0.279  Sum_probs=48.1

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCCceEEe-ec---eEEEeeecCCCCeEE
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASAGRIIT-NQ---TLVLQSVTRHSGGLY  190 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~~~~~~-~~---~l~i~~~~~~d~G~Y  190 (365)
                      ||.+.+...       ...|+.++|.|.+.| +|....++|.+||..+........... ++   ......+...+...|
T Consensus         3 PP~V~v~~~-------~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~y   75 (94)
T d1t7va1           3 PPSVVVTSH-------QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPY   75 (94)
T ss_dssp             CCEEEEEEE-------ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCE
T ss_pred             CCEeEEecc-------CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEE
Confidence            677666431       235788999999998 676677999999987653211111110 11   222333455666789


Q ss_pred             EEEEEcCCC
Q psy3823         191 ACSAINSQG  199 (365)
Q Consensus       191 ~C~~~~~~~  199 (365)
                      +|.+.+..-
T Consensus        76 tC~V~H~sl   84 (94)
T d1t7va1          76 SCHVQHSSL   84 (94)
T ss_dssp             EEEEEETTC
T ss_pred             EEEEEECCC
Confidence            999998754

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.92  E-value=1.5e-05  Score=53.94  Aligned_cols=66  Identities=14%  Similarity=0.147  Sum_probs=44.3

Q ss_pred             CceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         239 NEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       239 g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      +..++|.|.+.|+ |....+.|.++|..............+++.+......+..++...|+|.|.+.
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~   81 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHE   81 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEEECT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECCCCCCEEEEEEEeC
Confidence            4578999999985 55558999999875543332233345555544444444456667899999886

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.91  E-value=3.5e-05  Score=53.71  Aligned_cols=68  Identities=13%  Similarity=0.234  Sum_probs=47.3

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+.+|+.++|.|...+..... +.|++......+             ...+.....++....|.|.+++.+|+|.|.|.+
T Consensus        11 ~~~~G~svtL~C~~~~~~~~~-~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   89 (106)
T d1op3k1          11 SASVGDTITITCRASQSIETW-LAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQH   89 (106)
T ss_dssp             EECTTCEEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEEE
T ss_pred             EECCCCCEEEEEEeCCCCCCc-EEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeeee
Confidence            388999999999986555555 999974321110             011222244556678999999999999999987


Q ss_pred             Ec
Q psy3823         302 RN  303 (365)
Q Consensus       302 ~n  303 (365)
                      ..
T Consensus        90 ~~   91 (106)
T d1op3k1          90 YA   91 (106)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.91  E-value=3.9e-05  Score=54.20  Aligned_cols=82  Identities=17%  Similarity=0.202  Sum_probs=51.2

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-------------CCceeE-eeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-------------PLTSYS-IQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      +.+|+.++|.|.... .... +.|++........             .....+ ......+.|.|.+++.+|+|.|.|.+
T Consensus        13 v~~G~~vtl~C~~~~-~~~~-~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (113)
T d1h5ba_          13 LHEGTDSALRCNFTT-TMRS-VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAA   90 (113)
T ss_dssp             EETTCCEEEEEEESS-CCSE-EEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEE
T ss_pred             EcCCCCEEEEEEEec-CCcc-ceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEEe
Confidence            789999999999764 3344 9999832111000             000000 22334667999999999999999998


Q ss_pred             EcCCccce----ecEEEEEEcC
Q psy3823         302 RNEQGSQR----TPCTFHVVKA  319 (365)
Q Consensus       302 ~n~~g~~~----~~~~l~v~~~  319 (365)
                      ....+...    .-..|.|.|+
T Consensus        91 ~~~~~~~~~~FG~GT~L~V~p~  112 (113)
T d1h5ba_          91 EASSGSWQLIFGSGTQLTVMPV  112 (113)
T ss_dssp             ECSSSSSSCEECCCEEEEEECC
T ss_pred             cCCCCCCeeEECcCEEEEEEeC
Confidence            76544321    2235666654

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.91  E-value=4.3e-05  Score=53.38  Aligned_cols=67  Identities=12%  Similarity=0.170  Sum_probs=47.2

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|++++|.|......... +.|++.......             .........+.....|.|.+++.+|+|.|.|.+.
T Consensus        13 v~~G~svtl~C~~s~~~~~~-~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~   91 (107)
T d1kcvl1          13 MSVGEAVTLNCKASENVGTY-VSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQS   91 (107)
T ss_dssp             EETTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ECCCCCEEEEEEecCCcCCc-eEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEEec
Confidence            88999999999987665565 999974211100             1112222444567789999999999999999875


Q ss_pred             c
Q psy3823         303 N  303 (365)
Q Consensus       303 n  303 (365)
                      .
T Consensus        92 ~   92 (107)
T d1kcvl1          92 Y   92 (107)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.91  E-value=2.2e-05  Score=55.79  Aligned_cols=67  Identities=7%  Similarity=0.076  Sum_probs=44.6

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC--------CC------ce--eEeeCCCEEEEEEcCCCcccCeEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR--------PL------TS--YSIQDGSTSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~--------~~------~~--~~~~~~~~s~l~i~~v~~~d~G~Y~C  299 (365)
                      +.+|++++|.|......... +.|++........        ..      ..  .....+....|.|.+++.+|+|.|.|
T Consensus        12 v~~G~svtl~C~~~~~~~~~-~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyC   90 (115)
T d1i9ea_          12 VSEGASLQLRCKYSYSATPY-LFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFC   90 (115)
T ss_dssp             EETTSCEEECCEEECSSCCE-EEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEEcCCCCCC-EEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceecc
Confidence            88999999999987655555 8898732111100        00      00  01223345679999999999999999


Q ss_pred             EEEc
Q psy3823         300 WARN  303 (365)
Q Consensus       300 ~a~n  303 (365)
                      .+..
T Consensus        91 a~~~   94 (115)
T d1i9ea_          91 AVSG   94 (115)
T ss_dssp             EEEE
T ss_pred             cccC
Confidence            8764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=1.5e-05  Score=56.69  Aligned_cols=85  Identities=15%  Similarity=0.137  Sum_probs=50.9

Q ss_pred             ceEEEEecCCcEEEEEEeC---CCCC--cceEEEEeCCCcCCC---------------CCCceeEe--cCCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVD---ANPQ--AQYFTWAFNNSGTAP---------------RPLTSYSI--QDGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~---~~p~--~~~v~W~~~~~~~l~---------------~~~~~~~~--~~~~~~~l~i~~   76 (365)
                      +..+.+.+|+.|+|.|...   ..+.  ...+.|++.... ..               ...+....  ......+|.|.+
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSG-KRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTT-TCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeecee-ccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            4567889999999999842   1111  125668775432 10               00111111  112334699999


Q ss_pred             CCCCCCeEEEEEEEeCCCCCc---ccEEEEE
Q psy3823          77 TSELEYGTLLCWARNEQGNQR---TPCTFHV  104 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~~~~~---~~~~l~V  104 (365)
                      ++.+|+|.|.|.+........   ..+.|+|
T Consensus        86 v~~~DsG~Y~C~v~~~~~~~~~~~~~~~ltV  116 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISDSNRWLDVKGTTVTV  116 (118)
T ss_dssp             CCGGGCEEEEEEEECC-CCEEECSSCEEEEE
T ss_pred             CChhHCEEEEEEEEeCCCCeEEcCCCEEEEE
Confidence            999999999999875543321   4456665

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.8e-05  Score=54.36  Aligned_cols=67  Identities=19%  Similarity=0.198  Sum_probs=45.4

Q ss_pred             eecCceEEEEEEEeeeC-CCceeEEEeCCCCCCCC-------------------CCceeEeeCCCEEEEEEcCCCcccCe
Q psy3823         236 ALRNEQVLVSCTVDANP-QAQYFTWAFNNSDTAPR-------------------PLTSYSIQDGSTSVARYTPTSELEYG  295 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p-~~~~~~W~~~~~~~~~~-------------------~~~~~~~~~~~~s~l~i~~v~~~d~G  295 (365)
                      +..|++++|.|...... ... +.|++........                   ..+...........|.|.+++.+|+|
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~-i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~Dsg   90 (114)
T d1akjd_          12 WNLGETVELKCQVLLSNPTSG-CSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEG   90 (114)
T ss_dssp             CCTTCCEEEEEEECCSSCCSC-EEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ccCCCcEEEEEEeCCCcCCCC-EEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCCCE
Confidence            78899999999986543 344 8999843211110                   01111233344667999999999999


Q ss_pred             EEEEEEEc
Q psy3823         296 TLLCWARN  303 (365)
Q Consensus       296 ~Y~C~a~n  303 (365)
                      .|.|.+..
T Consensus        91 ~YyCa~~~   98 (114)
T d1akjd_          91 YYFCSALS   98 (114)
T ss_dssp             EEEEEEEE
T ss_pred             EEeEeEcC
Confidence            99999864

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.1e-05  Score=52.52  Aligned_cols=67  Identities=13%  Similarity=0.159  Sum_probs=44.3

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCC---CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPR---PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~---~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      .++.++|.|.+.|+ |....+.|.+||......   ........+++.+......+...+...|+|.+.+.
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence            46678999999985 655579999998754322   11222244555544444455556677899999986

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.90  E-value=2.9e-05  Score=54.68  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=48.2

Q ss_pred             CceEEEEecCCcEEEEEEeCC-C-CCcceEEEEeCCCcC-C-----------C-CCCce--eEecCCeEEEEEEccCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDA-N-PQAQYFTWAFNNSGT-A-----------P-RPLTS--YSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~-~-p~~~~v~W~~~~~~~-l-----------~-~~~~~--~~~~~~~~~~l~i~~~~~~   80 (365)
                      |+..+.+.+|++++|.|...+ . ... -+.|||..... +           . .....  ..........|.|.+++.+
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~-~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSN-YVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE   84 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCc-eEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcc
Confidence            455688999999999998533 2 223 69999853210 0           0 00111  1223345678999999999


Q ss_pred             CCeEEEEEEEe
Q psy3823          81 EYGTLLCWARN   91 (365)
Q Consensus        81 d~G~Y~C~a~~   91 (365)
                      |+|.|.|.+..
T Consensus        85 Dsa~YyCA~~~   95 (111)
T d1cd0a_          85 DEADYYCQSYD   95 (111)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCcEEEEeecc
Confidence            99999998653

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.89  E-value=4.6e-05  Score=53.17  Aligned_cols=67  Identities=13%  Similarity=0.211  Sum_probs=46.2

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCC-------------CCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA-------------PRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~-------------~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|+.++|.|......... +.|++......             ....+......+....|.|.+++.+|++.|.|.+.
T Consensus        13 ~~~G~svtl~C~~s~~~~~~-~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~   91 (107)
T d1mexl1          13 TSLGNRVSVTCKASQNVGTN-VAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQY   91 (107)
T ss_dssp             ECTTSCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             ECCCCCEEEEEEeCCCCCCc-eEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEeEC
Confidence            78999999999986555555 99997321110             00112222334556789999999999999999865


Q ss_pred             c
Q psy3823         303 N  303 (365)
Q Consensus       303 n  303 (365)
                      .
T Consensus        92 ~   92 (107)
T d1mexl1          92 N   92 (107)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.89  E-value=2.4e-05  Score=53.74  Aligned_cols=69  Identities=17%  Similarity=0.114  Sum_probs=45.3

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCC--CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRP--LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      ...|+..+|.|.+.|+ |....+.|.++|.....+.  .......+++.+......+..++...|+|.|.+.
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHW   87 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            4467788999999986 4444799999987543322  1122344555544444444556667899999886

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.1e-05  Score=52.52  Aligned_cols=70  Identities=11%  Similarity=0.064  Sum_probs=46.8

Q ss_pred             EecCCcEEEEEEeC-CCCCcceEEEEeCCCcCCCCCC---ce-eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          24 ALRNEQVLVSCTVD-ANPQAQYFTWAFNNSGTAPRPL---TS-YSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        24 v~~G~~~~l~C~~~-~~p~~~~v~W~~~~~~~l~~~~---~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      -..++.++|.|.+. ..|....++|++||.. +....   .. ....+++........+...+.+.|+|.+.+..-
T Consensus        12 ~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~-~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          12 HVTSSVTTLRCRALNYYPQNITMKWLKDKQP-MDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             EECSSCEEEEEEEEEEBSSCCEEEEEETTEE-CCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTS
T ss_pred             cCCCCCEEEEEEEeeEECCCCEEEEEECCEE-CccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            34578899999944 4687779999999987 54321   11 223444444444445555677889999998644

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.88  E-value=3.5e-05  Score=54.40  Aligned_cols=74  Identities=12%  Similarity=0.126  Sum_probs=48.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C-------CCCC--------cee-EecCCeEEEEEEccCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A-------PRPL--------TSY-SIQDGSTSVARYTPTSELE   81 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l-------~~~~--------~~~-~~~~~~~~~l~i~~~~~~d   81 (365)
                      |....+.+|++++|.|.... ... .+.||+-.... +       ....        ... ...+.....|.|.+++.+|
T Consensus         5 P~~~~~~~G~svtL~C~~~~-~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   82 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTM-GHD-KMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSH   82 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETT-CCS-EEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTT
T ss_pred             CCEEEECCCCCEEEEEEEeC-Ccc-cEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccc
Confidence            45678899999999999543 344 79999853220 0       0000        001 1122333479999999999


Q ss_pred             CeEEEEEEEeCCC
Q psy3823          82 YGTLLCWARNEQG   94 (365)
Q Consensus        82 ~G~Y~C~a~~~~~   94 (365)
                      +|.|.|.+....+
T Consensus        83 sa~YyCA~~~~~~   95 (112)
T d2cdeb1          83 TSQYLCASSENIG   95 (112)
T ss_dssp             CSEEEEEEECSSS
T ss_pred             cccEEEEEecCCC
Confidence            9999998875443

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.88  E-value=3.3e-05  Score=53.58  Aligned_cols=68  Identities=18%  Similarity=0.283  Sum_probs=46.4

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+.+|+.++|.|......... +.|++........             ........+.....|.|.+++.+|+|.|.|.+
T Consensus         9 ~~~~G~svtl~C~~~~~~~~~-~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~   87 (103)
T d8faba1           9 SVSPGQTARITCSANALPNQY-AYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQA   87 (103)
T ss_dssp             EECTTSCEEEEEECTTGGGSC-CEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEEE
T ss_pred             EECCCCCEEEEEEeCCCCCCC-EEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEeee
Confidence            378999999999876554455 8999743211100             11112234455678999999999999999977


Q ss_pred             Ec
Q psy3823         302 RN  303 (365)
Q Consensus       302 ~n  303 (365)
                      ..
T Consensus        88 ~~   89 (103)
T d8faba1          88 WD   89 (103)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.88  E-value=6.9e-05  Score=53.41  Aligned_cols=71  Identities=17%  Similarity=0.181  Sum_probs=45.8

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc----CC----CCCC---------ceeE--ecCCeEEEEEEccCC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG----TA----PRPL---------TSYS--IQDGSTSVARYTPTS   78 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~----~l----~~~~---------~~~~--~~~~~~~~l~i~~~~   78 (365)
                      ..+.+.+|++++|.|...+..  .. .+.|||-...    .+    ....         ....  ........|.|.+++
T Consensus         9 ~sv~~~~G~svtL~C~~~~~~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1           9 ISISRPRDETAQISCKVFIESFRSV-TIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (120)
T ss_dssp             SEEEEETTSCEEEEEEECCGGGGGC-CEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CEEEecCCCcEEEEEEEecccccCC-cccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence            467778999999999854322  33 6899984321    00    1111         0011  123445679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy3823          79 ELEYGTLLCWARN   91 (365)
Q Consensus        79 ~~d~G~Y~C~a~~   91 (365)
                      .+|+|.|.|.+..
T Consensus        88 ~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          88 EEDEAIYYCSYGE  100 (120)
T ss_dssp             GGGCSEEEEEECC
T ss_pred             cccceeEEEEEcC
Confidence            9999999997654

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.88  E-value=5.5e-05  Score=53.99  Aligned_cols=74  Identities=11%  Similarity=0.125  Sum_probs=48.8

Q ss_pred             CceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCC--Cc--CC-------CC--CCce--eEecCCeEEEEEEccCCCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNN--SG--TA-------PR--PLTS--YSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~--~~--~l-------~~--~~~~--~~~~~~~~~~l~i~~~~~~   80 (365)
                      ++..+.+.+|++++|.|...+..  .. .+.|||..  +.  .+       ..  ..+.  ..........|.|.+++.+
T Consensus         7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~-~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~   85 (120)
T d1hxma1           7 EHQTVPVSIGVPATLRCSMKGEAIGNY-YINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER   85 (120)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGGGS-EEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             cCCCEEECCCCCEEEEEEEeccCccCC-cCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccccc
Confidence            45567789999999999965432  34 79999832  11  00       00  0111  1123345678999999999


Q ss_pred             CCeEEEEEEEeC
Q psy3823          81 EYGTLLCWARNE   92 (365)
Q Consensus        81 d~G~Y~C~a~~~   92 (365)
                      |+|.|.|.....
T Consensus        86 Dsa~YyCA~~~~   97 (120)
T d1hxma1          86 DEGSYYCACDTL   97 (120)
T ss_dssp             GCEEEEEEEECC
T ss_pred             CCceeecCcccC
Confidence            999999987653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.87  E-value=4.2e-05  Score=54.02  Aligned_cols=71  Identities=15%  Similarity=0.261  Sum_probs=46.6

Q ss_pred             ceEEEEecCCcEEEEEEeCCC------CCcceEEEEeCCCcC-C------------CCCCceeEecCCeEEEEEEccCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDAN------PQAQYFTWAFNNSGT-A------------PRPLTSYSIQDGSTSVARYTPTSE   79 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~------p~~~~v~W~~~~~~~-l------------~~~~~~~~~~~~~~~~l~i~~~~~   79 (365)
                      +..+.+.+|++++|.|...+.      ... .+.|||..... .            ................|.|.+++.
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~-~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~   86 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKN-YLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQA   86 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEE-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCc-ceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccccc
Confidence            567888999999999974321      122 69999853210 0            011111222334556899999999


Q ss_pred             CCCeEEEEEEE
Q psy3823          80 LEYGTLLCWAR   90 (365)
Q Consensus        80 ~d~G~Y~C~a~   90 (365)
                      +|+|.|.|.+.
T Consensus        87 ~Dsa~YyCA~~   97 (113)
T d1q9ra1          87 EDLAVYYCKQS   97 (113)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CCCeEEEeccc
Confidence            99999999754

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.87  E-value=2.8e-05  Score=54.70  Aligned_cols=67  Identities=12%  Similarity=0.169  Sum_probs=44.7

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCC-------------Ccee--EeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRP-------------LTSY--SIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~-------------~~~~--~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      +.+|+.++|.|......... +.|++.........             .+..  ....+....|.|.+++.+|+|.|.|.
T Consensus        11 ~~~G~~vtl~C~~~~~~~~~-~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (110)
T d1u3ha1          11 VWEGETAILNCSYENSAFDY-FPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCA   89 (110)
T ss_dssp             EETTSCEEEEEEECCTTEEE-EEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEEC
T ss_pred             EcCCCCEEEEEEecCCCCcE-EEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeee
Confidence            78999999999986544444 99997421111100             0001  12334467899999999999999998


Q ss_pred             EEc
Q psy3823         301 ARN  303 (365)
Q Consensus       301 a~n  303 (365)
                      +..
T Consensus        90 ~~~   92 (110)
T d1u3ha1          90 ASA   92 (110)
T ss_dssp             CEE
T ss_pred             ecC
Confidence            763

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=4e-05  Score=54.25  Aligned_cols=71  Identities=10%  Similarity=0.137  Sum_probs=46.3

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCC--------------CCCceeE--eeCCCEEEEEEcCCCcccCeEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP--------------RPLTSYS--IQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~--------------~~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      .+.+|+.++|.|...+......+.|++......+              ...++..  ..++....|.|.+++.+|+|.|.
T Consensus        10 ~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~Yy   89 (114)
T d3bp5a1          10 TVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYL   89 (114)
T ss_dssp             EEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             EECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEEE
Confidence            3889999999999865332223899973211100              0111222  22334567999999999999999


Q ss_pred             EEEEcCC
Q psy3823         299 CWARNEQ  305 (365)
Q Consensus       299 C~a~n~~  305 (365)
                      |.+....
T Consensus        90 Ca~~~~~   96 (114)
T d3bp5a1          90 CGAISLH   96 (114)
T ss_dssp             EEEECSS
T ss_pred             EEEEeCC
Confidence            9887543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.86  E-value=2.9e-05  Score=53.13  Aligned_cols=71  Identities=14%  Similarity=0.072  Sum_probs=47.6

Q ss_pred             EecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce---eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          24 ALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        24 v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      +..++.++|.|. .+.+|....++|++|+.. +......   ....+++........+..++...|+|.+.+....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~-~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKL-VMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEE-CCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEe-ccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCC
Confidence            345788999999 445576679999999987 6544322   2234454444444445566777899999986544

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.86  E-value=3.2e-05  Score=52.99  Aligned_cols=70  Identities=13%  Similarity=0.088  Sum_probs=47.9

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce---eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .|+..+|.|. .+..|....++|++||.. +..+...   ....+++.+......+...+.+.|+|.+.+.....
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~-~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~~   90 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQE-EKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS   90 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEE-CCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEE-cCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCCC
Confidence            3667789999 445677669999999987 6543221   23456666666667778889999999999875443

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.85  E-value=3e-05  Score=52.76  Aligned_cols=65  Identities=14%  Similarity=0.163  Sum_probs=43.9

Q ss_pred             CceEEEEEEEeeeCCCceeEEEeCCCCCCCC------------CCcee--EeeCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         239 NEQVLVSCTVDANPQAQYFTWAFNNSDTAPR------------PLTSY--SIQDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       239 g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~------------~~~~~--~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      |+.++|.|......... +.|++......+.            ..+..  .........|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~-~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQS-FFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCE-EEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCc-EEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            78999999987665665 9999743211110            00011  123345678999999999999999988754

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3.6e-05  Score=52.42  Aligned_cols=69  Identities=12%  Similarity=0.157  Sum_probs=46.5

Q ss_pred             EEecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEe--cCCe---EEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          23 GALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSI--QDGS---TSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        23 ~v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~--~~~~---~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      ....|+.++|.|. .+.+|.+ .|+|++++.. +.........  .++.   .+.|.+.   ..+...|+|.+.+..-..
T Consensus        12 ~~~s~~~~~L~C~~~g~~P~~-~V~W~~n~~~-~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          12 EIPTSNIRRIICSTSGGFPEP-HLSWLENGEE-LNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             ECSSTTEEEEEEEEEEESSCE-EEEEEESSCE-ECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCE
T ss_pred             ccCCCCEEEEEEEECcccCCC-EEEEecCCcE-ecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCC
Confidence            3346888999999 5568999 9999999987 6554433322  2232   2345443   446789999999876543

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.85  E-value=0.00012  Score=51.44  Aligned_cols=67  Identities=10%  Similarity=0.142  Sum_probs=46.6

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-------------CCcee--EeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-------------PLTSY--SIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~~~~--~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      +.+|+.++|.|......... +.|++........             ..+..  ....+....|.|.+++.+|+|.|.|-
T Consensus        12 ~~~G~svtl~C~~s~~~~~~-~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   90 (111)
T d1bd2d1          12 VQEGRISILNCDYTNSMFDY-FLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCA   90 (111)
T ss_dssp             EETTSCEEEEEEECCTTCCE-EEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEeCCCCCCe-EEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEee
Confidence            78999999999987655555 8898742211110             01111  13345678899999999999999998


Q ss_pred             EEc
Q psy3823         301 ARN  303 (365)
Q Consensus       301 a~n  303 (365)
                      +..
T Consensus        91 ~~~   93 (111)
T d1bd2d1          91 AME   93 (111)
T ss_dssp             EES
T ss_pred             ccC
Confidence            764

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.85  E-value=6e-05  Score=52.57  Aligned_cols=67  Identities=12%  Similarity=0.292  Sum_probs=46.5

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|+.++|.|......... +.|++.......             .........++....|.|.+++.+|++.|.|.+.
T Consensus        13 ~~~G~svtL~C~~s~~~~~~-~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~   91 (107)
T d1tjgl1          13 ASVGDRITITCRASQGVTSA-LAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQL   91 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             ECCCCCEEEEEEECCCCCcc-EEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEEEC
Confidence            78999999999987554555 999974321111             0111222334567789999999999999999765


Q ss_pred             c
Q psy3823         303 N  303 (365)
Q Consensus       303 n  303 (365)
                      +
T Consensus        92 ~   92 (107)
T d1tjgl1          92 H   92 (107)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.84  E-value=9.6e-05  Score=51.50  Aligned_cols=73  Identities=12%  Similarity=0.137  Sum_probs=44.9

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCce-eEeeCCCEEEEEEcCCCccc-CeEEEEEEEcCCccc
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTS-YSIQDGSTSVARYTPTSELE-YGTLLCWARNEQGSQ  308 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~s~l~i~~v~~~d-~G~Y~C~a~n~~g~~  308 (365)
                      ...+..++|.|.+.++ |....+.|.++|.......... ....+++.+......+..++ ...|+|.|.+..+..
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC~V~H~s~~~   96 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRCIVRHENNKN   96 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEEEEEETTSGG
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEEEEEECCCCC
Confidence            5567889999999885 5444899999987544322211 12344444332233333344 337999999876554

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.84  E-value=7.4e-05  Score=52.61  Aligned_cols=69  Identities=12%  Similarity=0.133  Sum_probs=46.5

Q ss_pred             eeecCceEEEEEEEeeeC-CCceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         235 GALRNEQVLVSCTVDANP-QAQYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p-~~~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      .+.+|++++|.|...+.. ... +.|++.......+             ........+.....|.|.+++.+|+|.|.|.
T Consensus         9 ~~~~G~svtl~C~~s~~~~~~~-~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa   87 (112)
T d1kgcd1           9 ESNEEEPVHLPCNHSTISGTDY-IHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCI   87 (112)
T ss_dssp             EEETTSCEEEEEEESCCCTTCC-EEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEE
T ss_pred             EECCCCCEEEEEEEeCCCcccc-EEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEeee
Confidence            388999999999986544 344 8999843211111             0011123345567899999999999999998


Q ss_pred             EEcC
Q psy3823         301 ARNE  304 (365)
Q Consensus       301 a~n~  304 (365)
                      +...
T Consensus        88 ~~~~   91 (112)
T d1kgcd1          88 LPLA   91 (112)
T ss_dssp             CCCC
T ss_pred             EecC
Confidence            7643

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.84  E-value=9.2e-05  Score=51.60  Aligned_cols=68  Identities=13%  Similarity=0.282  Sum_probs=47.0

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|+.++|.|......... +.|++.......             .........++....|.|.+++.+|+|.|.|.+.
T Consensus        13 ~~~G~svtL~C~~s~~~~~~-~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~   91 (108)
T d1jhll_          13 ASPGETITINCRASKSISKS-LAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQH   91 (108)
T ss_dssp             ECTTSCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEEC
T ss_pred             ecCCCCEEEEEEccCCcCCc-eEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEeeC
Confidence            78899999999987655555 999974221110             0111122445566789999999999999999765


Q ss_pred             cC
Q psy3823         303 NE  304 (365)
Q Consensus       303 n~  304 (365)
                      +.
T Consensus        92 ~~   93 (108)
T d1jhll_          92 NE   93 (108)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.6e-05  Score=54.23  Aligned_cols=83  Identities=18%  Similarity=0.253  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCCc-------eEEeeceEEEeeecCC
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASAG-------RIITNQTLVLQSVTRH  185 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~~-------~~~~~~~l~i~~~~~~  185 (365)
                      +.+|.+.+...+  .......+..++|.|.+.+ +|....|+|.+||..+.......       .....+.|.|..-...
T Consensus         2 ~~pP~V~v~~~s--~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~   79 (104)
T d1o0va1           2 FTPPTVKILQSS--CDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWL   79 (104)
T ss_dssp             CCCCEEEEEEEC--CCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHH
T ss_pred             CCCCEEEEECCC--cccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcC
Confidence            347776654322  1112334577999999998 66666799999998875322111       1111344666555545


Q ss_pred             CCeEEEEEEEcCC
Q psy3823         186 SGGLYACSAINSQ  198 (365)
Q Consensus       186 d~G~Y~C~~~~~~  198 (365)
                      ....|+|++.+..
T Consensus        80 ~~~~ytC~V~H~~   92 (104)
T d1o0va1          80 SDRTYTCQVTYQG   92 (104)
T ss_dssp             TTCCEEEEEEETT
T ss_pred             CCCEEEEEEEECC
Confidence            5677999999864

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.83  E-value=1.4e-06  Score=59.92  Aligned_cols=71  Identities=13%  Similarity=0.192  Sum_probs=45.6

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCC--Cc--CCC-----C----CCceeE--ecCCeEEEEEEccCCCCCCeEEE
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNN--SG--TAP-----R----PLTSYS--IQDGSTSVARYTPTSELEYGTLL   86 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~--~~--~l~-----~----~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~   86 (365)
                      +.|.+|++++|.|.... ... .+.|||..  ..  .+.     .    ..+...  ........|.|.+++.+|+|.|.
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SIN-NLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEE-EEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             ceECCCCCEEEEEEEeC-Ccc-cEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            56889999999998543 345 89999832  11  000     0    000011  11223347999999999999999


Q ss_pred             EEEEeCCC
Q psy3823          87 CWARNEQG   94 (365)
Q Consensus        87 C~a~~~~~   94 (365)
                      |.+....+
T Consensus        81 CA~~~~~g   88 (96)
T d1ymmd1          81 CATDTTSG   88 (96)
T ss_dssp             EEEEETTS
T ss_pred             EeEecCCC
Confidence            98876544

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.82  E-value=7.2e-05  Score=52.29  Aligned_cols=68  Identities=12%  Similarity=0.214  Sum_probs=45.5

Q ss_pred             eeecCceEEEEEEEeee-CCCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         235 GALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      .+.+|+.++|.|..... .... +.|++.......             ...+......+....|.|.+++.+|+|.|.|.
T Consensus        12 ~v~~G~tv~l~C~~~~~~~~~~-~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa   90 (108)
T d2fx7l1          12 SLSPGERATLSCRASQSVGNNK-LAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQ   90 (108)
T ss_dssp             EECTTCCEEEEEEESSCCGGGC-EEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EECCCCCEEEEEEeecCCCCcc-ceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEeee
Confidence            38899999999987543 2334 889874321100             01112223345567899999999999999998


Q ss_pred             EEc
Q psy3823         301 ARN  303 (365)
Q Consensus       301 a~n  303 (365)
                      +..
T Consensus        91 ~~~   93 (108)
T d2fx7l1          91 QYG   93 (108)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            753

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.82  E-value=2.9e-05  Score=53.50  Aligned_cols=70  Identities=14%  Similarity=0.067  Sum_probs=43.4

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      ...|+..+|.|.+.|+ |....+.|.+||........  ......+++.+......+...+...|+|.|.+..
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s   88 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWG   88 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEECC
Confidence            4457788999999986 55547999999864432211  1122345554333333334455668999998863

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.81  E-value=1.8e-05  Score=54.18  Aligned_cols=69  Identities=13%  Similarity=0.170  Sum_probs=43.8

Q ss_pred             ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      ..++..+|.|.+.|+ |....+.|.++|........  ......+++.+......+..++...|+|.+.+..
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTT
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCC
Confidence            346677899999886 44447999999864332211  1223556666655555667778889999998863

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.81  E-value=6.6e-05  Score=52.51  Aligned_cols=67  Identities=16%  Similarity=0.325  Sum_probs=46.6

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|+.++|.|......... +.|++......+.             ........++....|.|.+++.+|+|.|.|.+.
T Consensus        13 ~~~G~svtL~C~~s~~~~~~-i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          13 ASVGETVTITCRASENIYSY-LAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             ECTTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ECCCCCEEEEEEeCCCcCcc-cceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEeee
Confidence            78899999999987555555 9999842211100             111222334567789999999999999999876


Q ss_pred             c
Q psy3823         303 N  303 (365)
Q Consensus       303 n  303 (365)
                      .
T Consensus        92 ~   92 (109)
T d1mqkl_          92 Y   92 (109)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.81  E-value=4.6e-05  Score=53.77  Aligned_cols=68  Identities=12%  Similarity=0.099  Sum_probs=45.6

Q ss_pred             eecCceEEEEEEEeee--CCCceeEEEeCCCCCCC-----CCCceeE--eeCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         236 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSDTAP-----RPLTSYS--IQDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~-----~~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      +.+|+.++|.|...+.  .... +.|++.......     ...+...  ........|.|.+++.+|+|.|.|.+...
T Consensus        12 ~~~G~svtL~C~~s~~~~~~~~-~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_          12 KETGESLTINCVLRDASFELKD-TGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYS   88 (113)
T ss_dssp             ECTTCCEEEEEEEESCSSCCCE-EEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             EcCCCCEEEEEEECCCcccCCc-cceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeecc
Confidence            7899999999999653  3344 899974221111     1111211  23344567999999999999999998643

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=4.7e-05  Score=51.82  Aligned_cols=68  Identities=12%  Similarity=0.189  Sum_probs=43.9

Q ss_pred             eecCceEEEEEEEee-eCCCceeEEEeCCCCCCCCCCceeE--eeCCCE---EEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         236 ALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRPLTSYS--IQDGST---SVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ...++.++|.|.+.| +|.+. +.|+++|...... .....  ..++..   +.|.+.   ..+...|+|.+.+..-..
T Consensus        13 ~~s~~~~~L~C~~~g~~P~~~-V~W~~n~~~~~~~-~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          13 IPTSNIRRIICSTSGGFPEPH-LSWLENGEELNAI-NTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             CSSTTEEEEEEEEEEESSCEE-EEEEESSCEECCS-EEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCE
T ss_pred             cCCCCEEEEEEEECcccCCCE-EEEecCCcEeccc-ceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCC
Confidence            345788999999987 58885 9999988644322 11111  223443   445554   355679999998875543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.80  E-value=7.7e-05  Score=52.00  Aligned_cols=67  Identities=13%  Similarity=0.249  Sum_probs=46.2

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCC-------------CCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA-------------PRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~-------------~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|+.++|.|......... +.|++......             ....++....++....|.|.+++.+|+|.|.|.+.
T Consensus        13 ~~~G~svtl~C~~s~~~~~~-~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1d5il1          13 ASLGERVTITCKASQDINSY-LSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQY   91 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ECCCCCEEEEEEcCCCCCCc-cceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEeeec
Confidence            78999999999886555555 88987421110             00111222334556789999999999999999775


Q ss_pred             c
Q psy3823         303 N  303 (365)
Q Consensus       303 n  303 (365)
                      .
T Consensus        92 ~   92 (107)
T d1d5il1          92 D   92 (107)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=4.7e-05  Score=51.73  Aligned_cols=70  Identities=11%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             ecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCcee--EecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          25 LRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSY--SIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        25 ~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      ..|+.++|.|. .+.+|....|+|++|+.. +.......  ...+++........+...+...|+|.+.+..-.
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~-~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl~   85 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEV-QEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLA   85 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEE-CCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTCS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEE-CCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCCC
Confidence            35889999999 445777669999999987 65433222  224455555555556667778999999987544

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.78  E-value=8.9e-05  Score=51.09  Aligned_cols=70  Identities=13%  Similarity=0.082  Sum_probs=43.7

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc-eeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT-SYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      +..|+..+|.|.+.|+ |....+.|.++|......... .....+++.+......+..++...|+|.|.+..
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCC
Confidence            4467888999999985 544489999998743222221 122445544332222344456668999999873

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.2e-05  Score=56.24  Aligned_cols=72  Identities=10%  Similarity=0.022  Sum_probs=44.8

Q ss_pred             eecCceEEEEEEEeeeCCCc---eeEEEeCCCCCCCC-----------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ---YFTWAFNNSDTAPR-----------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~---~~~W~~~~~~~~~~-----------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      +..|+.++|.|.........   .+.|.+++.....-           ..+......+ ...|.|.+++.+|+|.|.|.+
T Consensus         6 ~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g-~~sL~I~~v~~~D~G~Y~C~V   84 (105)
T d1dr9a1           6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN-NLSIVILALRPSDEGTYECVV   84 (105)
T ss_dssp             EETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTT-TTEEEECSCCGGGCEEEEEEE
T ss_pred             EEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCC-cEEEEECcCChHHCeEEEEEE
Confidence            77899999999875322111   46777654321000           0011112233 345999999999999999999


Q ss_pred             EcCCccc
Q psy3823         302 RNEQGSQ  308 (365)
Q Consensus       302 ~n~~g~~  308 (365)
                      .+..+..
T Consensus        85 ~~~~~~~   91 (105)
T d1dr9a1          85 LKYEKDA   91 (105)
T ss_dssp             EECCTTS
T ss_pred             EeCCCCC
Confidence            8755544

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.77  E-value=0.0001  Score=51.76  Aligned_cols=70  Identities=14%  Similarity=0.210  Sum_probs=47.0

Q ss_pred             eeeecCceEEEEEEEeeeC--CCceeEEEeCCCCC-------------CCCCCceeEeeCCCEEEEEEcCCCcccCeEEE
Q psy3823         234 YGALRNEQVLVSCTVDANP--QAQYFTWAFNNSDT-------------APRPLTSYSIQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p--~~~~~~W~~~~~~~-------------~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      ..+.+|+.++|.|...+..  ... +.|++.....             .....+.....++....|.|.+++.+|+|.|.
T Consensus        10 ~~v~~G~svtl~C~~s~~~~~~~~-~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1          10 VSAAPGQKVTISCSGSSSNIGNND-VSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY   88 (111)
T ss_dssp             EEECTTSCEEEEEECCCCCCCTSC-EEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             eEeCCCCCEEEEEEECCcCCcCCc-ccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceE
Confidence            3488999999999876432  333 9999642111             01111222244556778999999999999999


Q ss_pred             EEEEcC
Q psy3823         299 CWARNE  304 (365)
Q Consensus       299 C~a~n~  304 (365)
                      |.+...
T Consensus        89 CA~~~~   94 (111)
T d1rzfl1          89 CGTWDS   94 (111)
T ss_dssp             EEEEET
T ss_pred             EeecCC
Confidence            988643

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.7e-05  Score=53.95  Aligned_cols=81  Identities=16%  Similarity=0.227  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC--------CceEEeeceEEEeeecC
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS--------AGRIITNQTLVLQSVTR  184 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~--------~~~~~~~~~l~i~~~~~  184 (365)
                      ..+|.+.+.+.+    .....++.++|.|.+.+ +|....|.|.+||..+.....        .+.....+.|.+.....
T Consensus         3 ~~~P~V~~~~ps----~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w   78 (102)
T d1rzfl2           3 KAAPSVTLFPPS----SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQW   78 (102)
T ss_dssp             CBCCEEEEECCC----HHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHH
T ss_pred             CCCCEEEEECCC----HHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHh
Confidence            457777765432    12224677999999998 676777999999988753211        11111234555655544


Q ss_pred             CCCeEEEEEEEcCC
Q psy3823         185 HSGGLYACSAINSQ  198 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~  198 (365)
                      .....|+|.+.+..
T Consensus        79 ~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          79 KSHRSYSCQVTHEG   92 (102)
T ss_dssp             HHSSCEEEEEEETT
T ss_pred             CCCCEEEEEEEECC
Confidence            45667999999864

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.77  E-value=7.4e-05  Score=52.17  Aligned_cols=69  Identities=9%  Similarity=0.143  Sum_probs=47.2

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCC-------------CCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA-------------PRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~-------------~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+.+|++++|.|......... +.|++......             ....+.....++....|.|.+++.+|++.|.|.+
T Consensus        11 ~~~~G~svtl~C~~~~~~~~~-i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~   89 (109)
T d1w72l1          11 SVAPGQTARITCGGNNIGSRS-VHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQV   89 (109)
T ss_dssp             EECTTSCEEEEEECTTGGGSC-CEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EECCCCCEEEEEEcCCCCCcc-eeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEe
Confidence            378999999999875444444 99997421110             0111222344556778999999999999999988


Q ss_pred             EcC
Q psy3823         302 RNE  304 (365)
Q Consensus       302 ~n~  304 (365)
                      ...
T Consensus        90 ~~~   92 (109)
T d1w72l1          90 WDS   92 (109)
T ss_dssp             EET
T ss_pred             cCC
Confidence            643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.77  E-value=2.6e-05  Score=53.23  Aligned_cols=68  Identities=10%  Similarity=0.172  Sum_probs=43.5

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCC-CceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRP-LTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      .++.++|.|.+.|+ |....+.|.+++....... .......+++.+......+..++...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEGGGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeCccCCEEEEEEEeCC
Confidence            45689999999985 5554799999876432211 11223456665444344444566778999998864

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.76  E-value=9.6e-05  Score=51.70  Aligned_cols=68  Identities=15%  Similarity=0.276  Sum_probs=46.9

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+.+|+.++|.|...+..... +.|++......+.             ........++....|.|.+++.+|+|.|.|.+
T Consensus        14 ~~~~G~svtL~C~~s~~~~~~-~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~   92 (109)
T d1bwwa_          14 SASVGDRVTITCQASQDIIKY-LNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQ   92 (109)
T ss_dssp             EECTTCCEEEEEEESSCCTTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EECCCCCEEEEEEecCCCCCc-ceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEee
Confidence            388999999999987655555 8999742211110             11112233455678999999999999999987


Q ss_pred             Ec
Q psy3823         302 RN  303 (365)
Q Consensus       302 ~n  303 (365)
                      ..
T Consensus        93 ~~   94 (109)
T d1bwwa_          93 YQ   94 (109)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=4.1e-05  Score=54.83  Aligned_cols=71  Identities=10%  Similarity=0.012  Sum_probs=43.6

Q ss_pred             eeeecCceEEEEEEEeeeC--C--C--ceeEEEeCCCCCCCC----------------CCceeEe--eCCCEEEEEEcCC
Q psy3823         234 YGALRNEQVLVSCTVDANP--Q--A--QYFTWAFNNSDTAPR----------------PLTSYSI--QDGSTSVARYTPT  289 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p--~--~--~~~~W~~~~~~~~~~----------------~~~~~~~--~~~~~s~l~i~~v  289 (365)
                      +.+.+|+.++|.|......  .  .  ..+.|++.+......                ..+..+.  .......|.|.++
T Consensus        11 vtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   90 (121)
T d2g5ra1          11 VTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDA   90 (121)
T ss_dssp             EEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             EEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCC
Confidence            3488999999999985221  1  1  147888754221110                0112221  1223456999999


Q ss_pred             CcccCeEEEEEEEcC
Q psy3823         290 SELEYGTLLCWARNE  304 (365)
Q Consensus       290 ~~~d~G~Y~C~a~n~  304 (365)
                      +.+|+|.|.|.+...
T Consensus        91 ~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          91 RMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ChHHCEEEEEEEEeC
Confidence            999999999999754

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.76  E-value=8.1e-05  Score=52.93  Aligned_cols=70  Identities=13%  Similarity=0.096  Sum_probs=47.5

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCC----------------C--CCCceeE-eeCCCEEEEEEcCCCcccCeE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA----------------P--RPLTSYS-IQDGSTSVARYTPTSELEYGT  296 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~----------------~--~~~~~~~-~~~~~~s~l~i~~v~~~d~G~  296 (365)
                      +.+|+.++|.|...+..... +.|++......                .  ...++.. ......+.|.|.+++.+|+|.
T Consensus        13 ~~~G~~v~L~C~~~~~~~~~-~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~   91 (118)
T d2ij0c1          13 VKSGTSVKIECRSLDTNIHT-MFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSGF   91 (118)
T ss_dssp             ECTTCCEEEEEEECSSCCSE-EEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCEE
T ss_pred             EcCCCCEEEEEEEcCCcccE-EEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCce
Confidence            78999999999987655555 99997421110                0  0111111 233456789999999999999


Q ss_pred             EEEEEEcCCc
Q psy3823         297 LLCWARNEQG  306 (365)
Q Consensus       297 Y~C~a~n~~g  306 (365)
                      |.|.+....|
T Consensus        92 YyCa~~~~~~  101 (118)
T d2ij0c1          92 YVCSALAGSG  101 (118)
T ss_dssp             EEEEEECSSC
T ss_pred             EEEEEecCCC
Confidence            9999875444

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=4.8e-05  Score=51.87  Aligned_cols=66  Identities=9%  Similarity=0.017  Sum_probs=44.1

Q ss_pred             EEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEe
Q psy3823          22 YGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARN   91 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   91 (365)
                      ..|..|++|+|.|... .+.. .+.++|++.. ......... ..+....+.|.+++..|+|.|+|....
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~-~f~L~keg~~-~~~~~~~~~-~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          13 SVITQGSPVTLRCQGG-QETQ-EYRLYREKKT-APWITRIPQ-ELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             SEEETTCCEEEEEECC-TTCC-CEEEEESSSC-CHHHHTSCH-HHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCCCCcEEEEEeCC-CCCC-EEEEEECCCC-cccEEEccC-CCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            3468999999999853 3455 8899998754 211000000 111122799999999999999998764

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.75  E-value=4.5e-05  Score=54.11  Aligned_cols=68  Identities=12%  Similarity=0.151  Sum_probs=43.9

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC---------------------CCCceeE--eeCCCEEEEEEcCCCcc
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP---------------------RPLTSYS--IQDGSTSVARYTPTSEL  292 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~---------------------~~~~~~~--~~~~~~s~l~i~~v~~~  292 (365)
                      +.+|+.++|.|...+......+.|++-......                     ...+...  ..+.....|.|.+++.+
T Consensus        10 v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   89 (115)
T d2atpb1          10 VQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPE   89 (115)
T ss_dssp             ECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCGG
T ss_pred             EcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccCCC
Confidence            889999999999876433223899863210000                     0011111  12334567999999999


Q ss_pred             cCeEEEEEEEc
Q psy3823         293 EYGTLLCWARN  303 (365)
Q Consensus       293 d~G~Y~C~a~n  303 (365)
                      |+|.|.|.+..
T Consensus        90 Dsg~Y~Ca~~~  100 (115)
T d2atpb1          90 DSDFYFCATVG  100 (115)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CCcEEEEeEcC
Confidence            99999998753

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.75  E-value=0.00023  Score=50.05  Aligned_cols=68  Identities=16%  Similarity=0.194  Sum_probs=46.7

Q ss_pred             eeecCceEEEEEEEeeeC--CCceeEEEeCCCCCC-------------CCCCceeEeeCCCEEEEEEcCCCcccCeEEEE
Q psy3823         235 GALRNEQVLVSCTVDANP--QAQYFTWAFNNSDTA-------------PRPLTSYSIQDGSTSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p--~~~~~~W~~~~~~~~-------------~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C  299 (365)
                      .+.+|++++|.|...+..  ... +.|++......             ....+.....++....|.|.+++.+|++.|.|
T Consensus        11 ~v~~G~svtL~C~~s~~~~~~~~-~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyC   89 (114)
T d2rhea_          11 SGTPGQRVTISCTGSATDIGSNS-VIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYC   89 (114)
T ss_dssp             EECTTCCEEEEEECCTTTTTTSC-EEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EeCCCCCEEEEEEECCccccCCc-ccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEE
Confidence            378999999999986543  344 89997432111             01112222334557789999999999999999


Q ss_pred             EEEc
Q psy3823         300 WARN  303 (365)
Q Consensus       300 ~a~n  303 (365)
                      .+..
T Consensus        90 A~~~   93 (114)
T d2rhea_          90 AAWN   93 (114)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            8764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.74  E-value=4.6e-05  Score=53.20  Aligned_cols=66  Identities=15%  Similarity=0.240  Sum_probs=45.4

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCC-------------CCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA-------------PRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~-------------~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      +.+|++++|.|......... +.|++......             ....+......+....|.|.+++.+|+|.|.|.+.
T Consensus        13 ~~~G~~vtl~C~~s~~~~~~-~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          13 ASLGDRVTISCRASQDINNF-LNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             BCSSSCCEEEEEESSCCTTC-EEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             ECCCCCEEEEEEcCCCcCCC-eEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEeeeC
Confidence            78999999999986655555 99997432110             00011111334456789999999999999999764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.74  E-value=0.00016  Score=51.52  Aligned_cols=69  Identities=13%  Similarity=0.178  Sum_probs=46.1

Q ss_pred             eeecCceEEEEEEEeeeC--CCceeEEEeC--CCCC----------CC-CCCcee--EeeCCCEEEEEEcCCCcccCeEE
Q psy3823         235 GALRNEQVLVSCTVDANP--QAQYFTWAFN--NSDT----------AP-RPLTSY--SIQDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p--~~~~~~W~~~--~~~~----------~~-~~~~~~--~~~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      .+.+|+.++|.|...+..  .. .+.|++.  |+..          .. ...+..  .........|.|.+++.+|+|.|
T Consensus        12 ~v~~G~~vtL~C~~s~~~~~~~-~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~Y   90 (120)
T d1hxma1          12 PVSIGVPATLRCSMKGEAIGNY-YINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSY   90 (120)
T ss_dssp             EEETTCCEEEEEEECSSCGGGS-EEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEE
T ss_pred             EECCCCCEEEEEEEeccCccCC-cCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCcee
Confidence            388999999999997543  23 4899873  1110          00 011221  12334567899999999999999


Q ss_pred             EEEEEcC
Q psy3823         298 LCWARNE  304 (365)
Q Consensus       298 ~C~a~n~  304 (365)
                      .|.....
T Consensus        91 yCA~~~~   97 (120)
T d1hxma1          91 YCACDTL   97 (120)
T ss_dssp             EEEEECC
T ss_pred             ecCcccC
Confidence            9987654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.73  E-value=6.9e-05  Score=52.66  Aligned_cols=70  Identities=13%  Similarity=0.121  Sum_probs=46.5

Q ss_pred             eecCceEEEEEEEeee--CCCceeEEEeCCCCCCCC-----CCcee--EeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         236 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSDTAPR-----PLTSY--SIQDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~~-----~~~~~--~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      +..|+.++|.|...+.  .... +.|++........     ..+..  .........|.|++++.+|+|.|.|.+....+
T Consensus        11 ~~~G~svtl~C~~s~~s~~~~~-i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~~~   89 (112)
T d1sq2n_          11 KETGESLTINCVLRDASYALGS-TCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAGG   89 (112)
T ss_dssp             ECTTCCEEEEEEECSCSSCCCC-EEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBTTT
T ss_pred             EcCCCCEEEEEEECCCcccCCc-eEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecCCC
Confidence            7789999999988643  3455 9999743211111     11111  12233456899999999999999998875543

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=2.1e-05  Score=53.13  Aligned_cols=69  Identities=14%  Similarity=0.118  Sum_probs=45.2

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCcee-EecCCeEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSY-SIQDGSTSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      .++.++|.|. .+..|....++|++|+.. +....... ...+++.+......+...+...|+|.+.+..-.
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~-~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLA-SGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEE-CCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEe-CCccCccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            4568999999 445687779999999987 65443322 224444433333334445667899999986543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00016  Score=49.05  Aligned_cols=66  Identities=14%  Similarity=0.231  Sum_probs=40.5

Q ss_pred             cCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCCc--eEEeec---eEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         134 EGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASAG--RIITNQ---TLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       134 ~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~~--~~~~~~---~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      .++.++|.|.+.| +|....++|.+||..+.......  ....++   ....-.+...+...|+|++.+..-
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTTC
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECcC
Confidence            3567999999998 57777789999998875422111  111111   111122334555679999998643

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=0.00018  Score=50.03  Aligned_cols=80  Identities=19%  Similarity=0.275  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCC---------CCceEEeeceEEEeeecCC
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNA---------SAGRIITNQTLVLQSVTRH  185 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~---------~~~~~~~~~~l~i~~~~~~  185 (365)
                      +|.+.+.+.+.   ..+ .++.++|.|.+.+ +|....|.|.+||..+....         ..+.....+.|.|..-...
T Consensus         5 ~P~V~l~~ps~---~~~-~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~   80 (107)
T d1mjul2           5 APTVSIFPPSS---EQL-TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE   80 (107)
T ss_dssp             CCEEEEECCCH---HHH-TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCH---HHh-cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhC
Confidence            56666654321   122 4677999999997 56667799999998874310         1112222345666666555


Q ss_pred             CCeEEEEEEEcCCC
Q psy3823         186 SGGLYACSAINSQG  199 (365)
Q Consensus       186 d~G~Y~C~~~~~~~  199 (365)
                      ....|+|.+.+...
T Consensus        81 ~g~~ytC~V~H~~~   94 (107)
T d1mjul2          81 RHNSYTCEATHKTS   94 (107)
T ss_dssp             TCCEEEEEEECTTC
T ss_pred             CCCEEEEEEEECCC
Confidence            67789999998654

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.0001  Score=50.32  Aligned_cols=79  Identities=16%  Similarity=0.210  Sum_probs=47.0

Q ss_pred             CCceecCccceeeeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeE-eeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         223 EPVCKQSQQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYS-IQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       223 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      +|.+...+.. . +..|++++|.|.... ... .+.++++|............ ...+....+.|.+++.+|+|.|+|..
T Consensus         4 kPsLsa~P~~-~-v~~G~~VTL~C~~~~-~~~-~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           4 KPTLSAQPSP-V-VNSGGNVTLQCDSQV-AFD-GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             CCEEEEESCS-E-EETTCCEEEEEECSS-CCS-EEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CCEEEeeCCC-c-cCCCCcEEEEeCCCC-CCC-EEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEee
Confidence            4555544433 2 889999999998642 233 37788877643222111111 12344567999999999999999988


Q ss_pred             EcCC
Q psy3823         302 RNEQ  305 (365)
Q Consensus       302 ~n~~  305 (365)
                      ....
T Consensus        80 ~~~~   83 (98)
T d1ugna2          80 YDSN   83 (98)
T ss_dssp             ECTT
T ss_pred             EcCC
Confidence            6544

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.70  E-value=0.00013  Score=51.24  Aligned_cols=71  Identities=13%  Similarity=0.172  Sum_probs=47.4

Q ss_pred             eeeecCceEEEEEEEeeeC---CCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEE
Q psy3823         234 YGALRNEQVLVSCTVDANP---QAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p---~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      ..+.+|++++|.|...+..   ... +.|++.......             ...............|.|.+++.+|+|.|
T Consensus        10 ~~~~~G~svtl~C~~~~~~~~~~~~-i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   88 (112)
T d1lgva1          10 VSGSPGQSITVSCTGVSSIVGSYNL-VSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADY   88 (112)
T ss_dssp             EEECTTCCEEEEEECCCCSSSCCCC-EEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCCCCc-ceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEE
Confidence            3388999999999986532   233 899974211110             01112223445678899999999999999


Q ss_pred             EEEEEcCC
Q psy3823         298 LCWARNEQ  305 (365)
Q Consensus       298 ~C~a~n~~  305 (365)
                      .|.+.+..
T Consensus        89 yCa~~~~~   96 (112)
T d1lgva1          89 YCSSYDGS   96 (112)
T ss_dssp             EEEEECSS
T ss_pred             EEeeecCC
Confidence            99886543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.70  E-value=7.5e-05  Score=52.37  Aligned_cols=69  Identities=9%  Similarity=0.175  Sum_probs=45.8

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-------------CCceeE--eeCCCEEEEEEcCCCcccCeEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-------------PLTSYS--IQDGSTSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~C  299 (365)
                      .+.+|+.++|.|......... +.|++......+.             ......  ..++....|.|.+++.+|+|.|.|
T Consensus        11 ~~~~G~~vtl~C~~~~~~~~~-~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyC   89 (110)
T d1ac6a_          11 ALSEEDFLTIHCNYSASGYPA-LFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYC   89 (110)
T ss_dssp             EEETTEEEEECEEEECSSCCE-EEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEE
T ss_pred             EECCCCCEEEEEEecCCCCcc-eEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccce
Confidence            388999999999886544455 9999843111100             001111  233445679999999999999999


Q ss_pred             EEEcC
Q psy3823         300 WARNE  304 (365)
Q Consensus       300 ~a~n~  304 (365)
                      .+...
T Consensus        90 A~~~~   94 (110)
T d1ac6a_          90 ALSGG   94 (110)
T ss_dssp             EEEET
T ss_pred             eecCC
Confidence            88643

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.3e-05  Score=54.63  Aligned_cols=71  Identities=14%  Similarity=0.174  Sum_probs=45.8

Q ss_pred             eeeecCceEEEEEEEeee--CCCceeEEEeCCCCCCC-----------C-C----CceeE--eeCCCEEEEEEcCCCccc
Q psy3823         234 YGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSDTAP-----------R-P----LTSYS--IQDGSTSVARYTPTSELE  293 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~-----------~-~----~~~~~--~~~~~~s~l~i~~v~~~d  293 (365)
                      ..+.+|++++|.|...+.  .... +.|++.......           . .    .+..+  ........|.|.+++.+|
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~-~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQ-KAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSC-EEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCE-EEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            347899999999987642  3444 889974221110           0 0    01111  223445679999999999


Q ss_pred             CeEEEEEEEcCC
Q psy3823         294 YGTLLCWARNEQ  305 (365)
Q Consensus       294 ~G~Y~C~a~n~~  305 (365)
                      +|.|.|.+....
T Consensus        88 sg~Y~Cav~~~~   99 (113)
T d1smoa_          88 SGLYQCVIYQPP   99 (113)
T ss_dssp             CEEEEEEECCTT
T ss_pred             CceEEEEEECCC
Confidence            999999886543

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.00011  Score=50.68  Aligned_cols=66  Identities=17%  Similarity=0.401  Sum_probs=44.6

Q ss_pred             cCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC-------CceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         134 EGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS-------AGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       134 ~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      .++.++|.|.+.+ +|....+.|.+||........       .+.....+.|.+..-..+....|+|++.+...
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            4678999999998 577777999999987643211       11112234566665555556679999998654

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.68  E-value=0.00012  Score=49.87  Aligned_cols=69  Identities=7%  Similarity=0.031  Sum_probs=43.4

Q ss_pred             CceEEEEEEEeee-CCCceeEEEeCCCCCCCC------CCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         239 NEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPR------PLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       239 g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      ...++|.|.+.|+ |....+.|.+||......      .....-..+++.+......+...+...|+|.+.+....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s~~   89 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIATG   89 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGGGT
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            4578999999986 544489999987643211      11122244666544444445556667899999865433

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.68  E-value=0.00016  Score=51.35  Aligned_cols=67  Identities=16%  Similarity=0.189  Sum_probs=43.9

Q ss_pred             eecCceEEEEEEEeeeC--CCceeEEEeCCCCCCC-----------------CCCceeEe--eCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANP--QAQYFTWAFNNSDTAP-----------------RPLTSYSI--QDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p--~~~~~~W~~~~~~~~~-----------------~~~~~~~~--~~~~~s~l~i~~v~~~d~  294 (365)
                      ..+|+.++|.|.+.+..  ... +.|++......+                 ...+....  .......|.|.+++.+|+
T Consensus        13 ~~~G~svtL~C~~~~~~~~~~~-i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Ds   91 (120)
T d1ypzf1          13 RPRDETAQISCKVFIESFRSVT-IHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDE   91 (120)
T ss_dssp             EETTSCEEEEEEECCGGGGGCC-EEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGC
T ss_pred             ecCCCcEEEEEEEecccccCCc-ccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccccc
Confidence            66899999999986542  344 899874211100                 00111112  234567799999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      +.|.|.+.-
T Consensus        92 a~YyCA~~~  100 (120)
T d1ypzf1          92 AIYYCSYGE  100 (120)
T ss_dssp             SEEEEEECC
T ss_pred             eeEEEEEcC
Confidence            999997754

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=5e-05  Score=50.98  Aligned_cols=69  Identities=13%  Similarity=0.142  Sum_probs=43.2

Q ss_pred             ecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce---eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          25 LRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        25 ~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ..++.++|.|. .+..|....++|+++|.. +..+...   ....+++........+...+...|+|.+.+..-
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~-~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~ytC~V~H~~L   85 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEE-LIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGL   85 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEE-ECTTCEECCCEECSSSCEEEEEEEEEESSTTTTCEEEEECSSC
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEE-eCCCEEECcEecCCCCcEEEEEEEEecCcCCCEEEEEEEECCC
Confidence            35678999999 555677679999999987 6544321   223444332222222333455579999987653

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.65  E-value=0.00012  Score=50.54  Aligned_cols=80  Identities=20%  Similarity=0.263  Sum_probs=50.5

Q ss_pred             CCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCC-------CCceEEeeceEEEeeecCCCC
Q psy3823         116 KPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNA-------SAGRIITNQTLVLQSVTRHSG  187 (365)
Q Consensus       116 ~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~-------~~~~~~~~~~l~i~~~~~~d~  187 (365)
                      +|.+.+.+.+    .....++.++|.|.+.+ +|....+.|.+||.......       ..+.....+.|.+..-.....
T Consensus         4 ~P~V~l~~ps----~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~   79 (102)
T d1igtb4           4 APQVYVLPPP----EEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVER   79 (102)
T ss_dssp             CCEEEEECCC----GGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTC
T ss_pred             CCEEEEECCC----HHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCC
Confidence            5666655432    12225778999999998 57777799999997653211       111122234566665555566


Q ss_pred             eEEEEEEEcCCC
Q psy3823         188 GLYACSAINSQG  199 (365)
Q Consensus       188 G~Y~C~~~~~~~  199 (365)
                      ..|+|.+.+...
T Consensus        80 ~~ytC~V~H~~l   91 (102)
T d1igtb4          80 NSYSCSVVHEGL   91 (102)
T ss_dssp             CCEEEEEECTTS
T ss_pred             CEEEEEEEeCCC
Confidence            789999998653

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.65  E-value=5.9e-05  Score=51.52  Aligned_cols=70  Identities=14%  Similarity=0.164  Sum_probs=45.9

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce---eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCCCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQGNQ   96 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~~~   96 (365)
                      .|+..+|.|. .+..|....++|++||.. +..+...   ....+++.+......+...+...|+|.+.+.....
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~-~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~~   88 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQE-ETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS   88 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEE-ECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCSS
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEE-cCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCCC
Confidence            4677889999 555676669999999976 5443221   23355555555555667778889999999865443

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.65  E-value=6.9e-05  Score=54.07  Aligned_cols=82  Identities=13%  Similarity=0.168  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCC-------------CCceEEeeceEEEe
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNA-------------SAGRIITNQTLVLQ  180 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~-------------~~~~~~~~~~l~i~  180 (365)
                      .||.+.+.+.+.   ..+..+..++|.|.+.+ +|....|.|++||..+....             ..+.....+.|.+.
T Consensus         3 ~PP~V~l~~Ps~---~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~   79 (127)
T d1ogae2           3 FPPEVAVFEPSE---AEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVS   79 (127)
T ss_dssp             BCCEEEEECCCH---HHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEE
T ss_pred             cCCEEEEECCCH---HHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEEC
Confidence            477777654321   23445688999999997 56677799999998875311             01112223466676


Q ss_pred             eecCCCCe-EEEEEEEcCCC
Q psy3823         181 SVTRHSGG-LYACSAINSQG  199 (365)
Q Consensus       181 ~~~~~d~G-~Y~C~~~~~~~  199 (365)
                      .....+.| .|+|++.+...
T Consensus        80 ~~~W~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          80 ATFWQNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             HHHHTCTTCEEEEEEEECCB
T ss_pred             HHHhCCCCCEEEEEEEECCC
Confidence            65555644 79999998654

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=9.9e-05  Score=51.73  Aligned_cols=70  Identities=11%  Similarity=0.050  Sum_probs=40.0

Q ss_pred             eecCceEEEEEEEeeeCCCc--eeEEE--eCCCCCC----------C-CCCce--eEeeCCCEEEEEEcCCCcccCeEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ--YFTWA--FNNSDTA----------P-RPLTS--YSIQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~--~~~W~--~~~~~~~----------~-~~~~~--~~~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      +..|++++|.|.....+...  .+.|+  +++....          . ..+.+  +.........|.|.+++.+|+|.|.
T Consensus         6 a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y~   85 (110)
T d1ncna_           6 AYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQ   85 (110)
T ss_dssp             EETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEEE
T ss_pred             EEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEEE
Confidence            77899999999985332211  23443  3322110          0 00000  0111122345999999999999999


Q ss_pred             EEEEcCC
Q psy3823         299 CWARNEQ  305 (365)
Q Consensus       299 C~a~n~~  305 (365)
                      |.+....
T Consensus        86 C~V~~~~   92 (110)
T d1ncna_          86 CIIHHKK   92 (110)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecC
Confidence            9996443

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=5.8e-05  Score=52.45  Aligned_cols=72  Identities=14%  Similarity=0.202  Sum_probs=45.9

Q ss_pred             ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc---eeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT---SYSIQDGST---SVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ..++.++|.|.+.++ |....+.|.++|.........   .....+++.   +.|.|..-.+.....|+|.|.+.....
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~   95 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASP   95 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence            346789999999885 544479999988743321111   122344443   456666555556678999999875543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.64  E-value=0.00028  Score=48.73  Aligned_cols=66  Identities=18%  Similarity=0.307  Sum_probs=44.1

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+.+|+.++|.|.... .... +.|++.......             ..........+....|.|.+++.+|+|.|.|.+
T Consensus        11 ~~~~G~~vtl~C~~s~-~~~~-~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   88 (104)
T d1yqvl1          11 SASPGEKVTMTCSASS-SVNY-MYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQQ   88 (104)
T ss_dssp             EECTTCCEEEEEEESS-CCSC-CEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EECCCCCEEEEEEeCC-CCCc-cEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEEe
Confidence            3889999999998643 3344 899974321100             011112233456678999999999999999976


Q ss_pred             E
Q psy3823         302 R  302 (365)
Q Consensus       302 ~  302 (365)
                      .
T Consensus        89 ~   89 (104)
T d1yqvl1          89 W   89 (104)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.62  E-value=0.00027  Score=49.54  Aligned_cols=66  Identities=18%  Similarity=0.382  Sum_probs=44.2

Q ss_pred             eecCceEEEEEEEeeeC-----CCceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEE
Q psy3823         236 ALRNEQVLVSCTVDANP-----QAQYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p-----~~~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      +.+|++++|.|...+..     .. .+.|++......+.             ..+......+....|.|.+++.+|++.|
T Consensus        13 v~~G~svtL~C~~s~~~~~~~~~~-~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAvY   91 (112)
T d1mjul1          13 VTPGESVSISCRSSKSLLHSNGNT-YLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVY   91 (112)
T ss_dssp             ECTTSCEEEEEEESSCCBCTTSCB-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEEE
T ss_pred             ECCCCCEEEEEEECCCCccCCCCc-eeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCceE
Confidence            78999999999986531     23 48998643211110             1112224455677899999999999999


Q ss_pred             EEEEE
Q psy3823         298 LCWAR  302 (365)
Q Consensus       298 ~C~a~  302 (365)
                      .|...
T Consensus        92 yCa~~   96 (112)
T d1mjul1          92 YCLQH   96 (112)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.62  E-value=0.0002  Score=50.20  Aligned_cols=69  Identities=12%  Similarity=0.198  Sum_probs=46.4

Q ss_pred             eeeecCceEEEEEEEeeeC--CCceeEEEeCCCCC-------------CCCCCceeE--eeCCCEEEEEEcCCCcccCeE
Q psy3823         234 YGALRNEQVLVSCTVDANP--QAQYFTWAFNNSDT-------------APRPLTSYS--IQDGSTSVARYTPTSELEYGT  296 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p--~~~~~~W~~~~~~~-------------~~~~~~~~~--~~~~~~s~l~i~~v~~~d~G~  296 (365)
                      ..+.+|++++|.|...+..  .. .+.|++.....             .....+...  ........|.|++++.+|++.
T Consensus        10 ~sv~~G~svtL~C~~s~~~~~~~-~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~   88 (111)
T d1cd0a_          10 VSESPGKTVTISCTRSSGNIDSN-YVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEAD   88 (111)
T ss_dssp             EEECTTSCEEEEEEESSSCGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             eEECCCCCEEEEEEECCCCccCc-eEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcE
Confidence            3488999999999986532  23 38998742111             001112222  334567889999999999999


Q ss_pred             EEEEEEc
Q psy3823         297 LLCWARN  303 (365)
Q Consensus       297 Y~C~a~n  303 (365)
                      |.|.+.+
T Consensus        89 YyCA~~~   95 (111)
T d1cd0a_          89 YYCQSYD   95 (111)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecc
Confidence            9998754

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.60  E-value=0.00025  Score=49.64  Aligned_cols=70  Identities=17%  Similarity=0.304  Sum_probs=45.4

Q ss_pred             eeecCceEEEEEEEeee-CC--CceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEE
Q psy3823         235 GALRNEQVLVSCTVDAN-PQ--AQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~-p~--~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      .+.+|+.++|.|..... ..  ...+.|++.......             ...++.....+....|.|.+++.+|++.|.
T Consensus        12 s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~Yy   91 (111)
T d2gsia1          12 AVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATYY   91 (111)
T ss_dssp             EEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             EECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCceEE
Confidence            38899999999987532 11  113899874211111             011222233445678999999999999999


Q ss_pred             EEEEcC
Q psy3823         299 CWARNE  304 (365)
Q Consensus       299 C~a~n~  304 (365)
                      |.+...
T Consensus        92 Ca~~~~   97 (111)
T d2gsia1          92 CSHIRE   97 (111)
T ss_dssp             EEECSS
T ss_pred             EEECCC
Confidence            977543

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=0.00016  Score=49.71  Aligned_cols=65  Identities=20%  Similarity=0.366  Sum_probs=44.3

Q ss_pred             cCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC-------CceEEeeceEEEeeecCCCCeEEEEEEEcCC
Q psy3823         134 EGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS-------AGRIITNQTLVLQSVTRHSGGLYACSAINSQ  198 (365)
Q Consensus       134 ~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~  198 (365)
                      ..+.++|.|.+.+ +|...+|.|.+||..+.....       .+.....+.|.+..-.......|+|++.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4567999999998 677788999999987642111       1111223456665555556778999999875

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=0.00021  Score=49.82  Aligned_cols=69  Identities=14%  Similarity=0.224  Sum_probs=46.0

Q ss_pred             eeecCceEEEEEEEeeeC-CC-ceeEEEeCCCCC-------------CCCCCceeEeeCCCEEEEEEcCCCcccCeEEEE
Q psy3823         235 GALRNEQVLVSCTVDANP-QA-QYFTWAFNNSDT-------------APRPLTSYSIQDGSTSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p-~~-~~~~W~~~~~~~-------------~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C  299 (365)
                      .+.+|++++|.|...+.. .. ..+.|++.....             .....++.....+..+.|.|.+++.+|+|.|.|
T Consensus        11 svs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyC   90 (110)
T d1oaql_          11 TTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYFC   90 (110)
T ss_dssp             EECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEE
T ss_pred             EeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEEE
Confidence            378999999999996432 21 248898632100             011122222345567889999999999999999


Q ss_pred             EEEc
Q psy3823         300 WARN  303 (365)
Q Consensus       300 ~a~n  303 (365)
                      .+..
T Consensus        91 a~~~   94 (110)
T d1oaql_          91 ALWY   94 (110)
T ss_dssp             EEEE
T ss_pred             Eccc
Confidence            8764

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.59  E-value=0.00012  Score=50.37  Aligned_cols=69  Identities=10%  Similarity=0.097  Sum_probs=45.7

Q ss_pred             ecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCcee--EecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          25 LRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSY--SIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        25 ~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      ..|+..+|.|. .+..|....+.|++|+.. +.......  ...+++........+..+|...|+|.+.+..-
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~-~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVP-VEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEPD   87 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEE-CSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETTT
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCee-cCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCCC
Confidence            45888999999 445777679999999987 65444332  23445333323333445566789999998743

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00021  Score=49.43  Aligned_cols=76  Identities=16%  Similarity=0.347  Sum_probs=45.9

Q ss_pred             ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc-eeEeeCCC---EEEEEEcCCCccc--CeEEEEEEEcCCccce
Q psy3823         237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT-SYSIQDGS---TSVARYTPTSELE--YGTLLCWARNEQGSQR  309 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~-~~~~~~~~---~s~l~i~~v~~~d--~G~Y~C~a~n~~g~~~  309 (365)
                      ...+.++|.|.+.++ |....|.|.++|......... .....++.   .+.|.|...+...  ...|+|.|.+..+...
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~   98 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKE   98 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEE
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEE
Confidence            346779999999985 555589999988643322111 11234444   3556666544432  2479999999877655


Q ss_pred             ecE
Q psy3823         310 TPC  312 (365)
Q Consensus       310 ~~~  312 (365)
                      ..+
T Consensus        99 ~~v  101 (105)
T d1dn0b2          99 KNV  101 (105)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            443

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.58  E-value=0.00013  Score=50.73  Aligned_cols=76  Identities=12%  Similarity=0.031  Sum_probs=48.2

Q ss_pred             EecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCcee--EecCCe---EEEEEEccCCCCCCeEEEEEEEeCCCCCc
Q psy3823          24 ALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSY--SIQDGS---TSVARYTPTSELEYGTLLCWARNEQGNQR   97 (365)
Q Consensus        24 v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~--~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~~~~~~~~   97 (365)
                      +..++.++|.|. .+..|....++|+++|.. +.......  ...+++   .+.|.+....+  ...|+|.+.+......
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~-~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~~~   97 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSN-TILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNKNG   97 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSC-CCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSGGG
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeE-ccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCCCC
Confidence            456789999999 555777779999999987 65433221  123332   33455544433  2369999998766554


Q ss_pred             ccEEE
Q psy3823          98 TPCTF  102 (365)
Q Consensus        98 ~~~~l  102 (365)
                      ..-++
T Consensus        98 i~~~i  102 (107)
T d1hxmb2          98 VDQEI  102 (107)
T ss_dssp             SCEEE
T ss_pred             CceEE
Confidence            33333

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.58  E-value=0.00023  Score=49.86  Aligned_cols=68  Identities=15%  Similarity=0.281  Sum_probs=45.1

Q ss_pred             eecCceEEEEEEEeee----CCCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEE
Q psy3823         236 ALRNEQVLVSCTVDAN----PQAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~----p~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      +.+|+.++|.|.....    ... .+.|++......+             .........++....|.|.+++.+|+|.|.
T Consensus        13 v~~G~svtl~C~~s~s~~~~~~~-~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   91 (111)
T d1j05a_          13 VSLGQRATMSCRAGESVDIFGVG-FLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYY   91 (111)
T ss_dssp             CCTTSCEEEEEEESSCCBSSSCB-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEeccCCccCCce-eEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccEE
Confidence            7899999999987432    122 3899974221111             011122244456788999999999999999


Q ss_pred             EEEEcC
Q psy3823         299 CWARNE  304 (365)
Q Consensus       299 C~a~n~  304 (365)
                      |.+.+.
T Consensus        92 Ca~~~~   97 (111)
T d1j05a_          92 CQQTNE   97 (111)
T ss_dssp             EEECSS
T ss_pred             EeecCC
Confidence            987643

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.56  E-value=0.00017  Score=50.23  Aligned_cols=68  Identities=18%  Similarity=0.269  Sum_probs=45.5

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCC------------CC-CCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA------------PR-PLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~------------~~-~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+.+|+.++|.|......... +.|++......            .. ..+.....+.....|.|.+++.+|+|.|.|.+
T Consensus        10 ~~~~G~svtl~C~~~~~~~~~-i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~   88 (108)
T d1nfde1          10 SVTVGETVKITCSGDQLPKNF-AYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLS   88 (108)
T ss_dssp             EEETTSCCCEEEEETTGGGSC-CEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEE
T ss_pred             EECCCCCEEEEEECCCCCCcc-EEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEEe
Confidence            378999999999875444444 89987321110            00 11222233445678999999999999999987


Q ss_pred             Ec
Q psy3823         302 RN  303 (365)
Q Consensus       302 ~n  303 (365)
                      ..
T Consensus        89 ~~   90 (108)
T d1nfde1          89 SY   90 (108)
T ss_dssp             EE
T ss_pred             ec
Confidence            64

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.56  E-value=4.5e-05  Score=51.97  Aligned_cols=68  Identities=9%  Similarity=0.127  Sum_probs=43.8

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce--eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS--YSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      .++.++|.|. .+..|....++|++++.. +......  ....+++.+......+..+|...|+|.+.+..-
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~-~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQE-QQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSSL   85 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEE-CTTCEECCCEECTTSCEEEEEEEEEEGGGCTTEEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECccc-CCCceeCccEeCCCCcEEEEEEEEEeCccCCEEEEEEEeCCC
Confidence            4678999999 555787779999999876 5443221  233455433333333334566789999998653

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00041  Score=48.14  Aligned_cols=81  Identities=20%  Similarity=0.222  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCC---------CCceEEeeceEEEeeecC
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNA---------SAGRIITNQTLVLQSVTR  184 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~---------~~~~~~~~~~l~i~~~~~  184 (365)
                      .+|.+.+.+.+    .....++.++|.|.+.+ +|....|+|.+||..+....         ..+.....+.|.|..-..
T Consensus         4 ~~P~V~l~~Ps----~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W   79 (107)
T d1c5cl2           4 AAPSVFIFPPS----DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY   79 (107)
T ss_dssp             BCCEEEEECCC----HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH
T ss_pred             cCCEEEEECCC----HHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHh
Confidence            46777665432    11224678999999997 56667799999998664211         111222345666766655


Q ss_pred             CCCeEEEEEEEcCCC
Q psy3823         185 HSGGLYACSAINSQG  199 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~  199 (365)
                      .....|+|.+.+...
T Consensus        80 ~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          80 EKHKVYACEVTHQGL   94 (107)
T ss_dssp             TTCCEEEEEEECTTC
T ss_pred             CCCCEEEEEEEECCC
Confidence            666789999998654

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=0.00021  Score=49.25  Aligned_cols=66  Identities=20%  Similarity=0.383  Sum_probs=43.7

Q ss_pred             cCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCC-------CceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         134 EGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNAS-------AGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       134 ~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      .++.++|.|.+.+ +|....+.|.+||.++.....       .+.....+.|.|..........|+|.+.+...
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~   91 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            3568999999997 566677999999987642111       11112234566666555666789999998643

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=8.8e-05  Score=51.83  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=44.9

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCce---e---EeeCCC---EEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTS---Y---SIQDGS---TSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~---~---~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      +..++.++|.|.+.++ |....|.|+++|..........   .   ...++.   .+.|.|..-.+.....|+|.|.+..
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            5578899999999885 5454799999886443221110   0   022343   3456665544455779999998865

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=0.00017  Score=51.15  Aligned_cols=68  Identities=19%  Similarity=0.302  Sum_probs=45.4

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEEEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTLLCWA  301 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a  301 (365)
                      .+.+|+.++|.|...+.-... +.|++.......             ..........+....|.|.+++.+|+|.|.|.+
T Consensus        12 ~~~~G~svtl~C~~s~~~~~~-i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~   90 (119)
T d1f3rb2          12 SASVGDRVTLSCKGSQNINNY-LAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQ   90 (119)
T ss_dssp             CCCTTCCEEEEEECSSCCBTC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EECCCCCEEEEEEeCCCCcce-eEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEeec
Confidence            378999999999876544444 999974211100             011111133445678999999999999999976


Q ss_pred             Ec
Q psy3823         302 RN  303 (365)
Q Consensus       302 ~n  303 (365)
                      ..
T Consensus        91 ~~   92 (119)
T d1f3rb2          91 YN   92 (119)
T ss_dssp             ES
T ss_pred             cC
Confidence            53

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.00048  Score=43.99  Aligned_cols=81  Identities=19%  Similarity=0.246  Sum_probs=54.8

Q ss_pred             eeecCceEEEEEEEee-eCCCceeEEEeCCCCCCCCCC---ceeE----eeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         235 GALRNEQVLVSCTVDA-NPQAQYFTWAFNNSDTAPRPL---TSYS----IQDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~-~p~~~~~~W~~~~~~~~~~~~---~~~~----~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      .+..|+.+.|.|.+.- .-.|. +.|-+-.+..-....   ....    ..+-....|.+.++-.+|.|.|+|.|....|
T Consensus        14 s~~~G~~f~leCPVkYC~~RPn-VtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          14 SAWTGELFKIECPVKYCVHRPN-VTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EECTTSCEEEEEEEECSSSCCC-EEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eEecCCceEecCcchhhcCCCC-cEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            3789999999999975 35676 999764332211111   1111    2233466899999999999999999998777


Q ss_pred             cc-eecEEEEE
Q psy3823         307 SQ-RTPCTFHV  316 (365)
Q Consensus       307 ~~-~~~~~l~v  316 (365)
                      -. +.++++.|
T Consensus        93 vieSHSvti~V  103 (104)
T d1xaua_          93 VINSHSVTIHV  103 (104)
T ss_dssp             EEECCCEEEEE
T ss_pred             heecceEEEEe
Confidence            54 45666654

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=8.9e-05  Score=51.17  Aligned_cols=71  Identities=14%  Similarity=0.183  Sum_probs=45.4

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCc--eeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLT--SYSIQDGST---SVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      .++.++|.|.+.++ |....|.|.++|.........  .....++..   +.|.|..-.+.....|+|.|.+.....
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   95 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSS   95 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccE
Confidence            35678999999886 544479999988644322211  122345543   456666555556789999999865433

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=6e-05  Score=50.55  Aligned_cols=67  Identities=13%  Similarity=0.158  Sum_probs=40.7

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcC
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGSTSVARYTPTSELEYGTLLCWARNE  304 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~  304 (365)
                      .++.++|.|.+.|+ |....+.|.++|........  ......+++........+...+...|+|.|.+.
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~ytC~V~H~   83 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQ   83 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESSTTTTCEEEEECS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCcCCCEEEEEEEEC
Confidence            45789999999986 44447999999864432221  122344454432222233344555799999875

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=6.6e-05  Score=51.05  Aligned_cols=68  Identities=12%  Similarity=0.130  Sum_probs=44.5

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce---eEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      .++.++|.|. .+..|....++|+++|.. +......   ....++.........+...+...|+|.+.+..-
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~-~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGED-QTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEE-CGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTTC
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEE-cCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECcC
Confidence            4678999999 555677679999999987 5543322   222444333333334455566789999998643

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00024  Score=50.37  Aligned_cols=70  Identities=7%  Similarity=-0.056  Sum_probs=41.3

Q ss_pred             EEEecCCcEEEEEEeCCC--CCcceEEEEeCCCcCCC---------CC------Cce--eEecCCeEEEEEEccCCCCCC
Q psy3823          22 YGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGTAP---------RP------LTS--YSIQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~l~---------~~------~~~--~~~~~~~~~~l~i~~~~~~d~   82 (365)
                      ..+.+|+.++|.|...+.  +....+.|++.....+.         ..      ...  ..........|+|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            457789999999984332  23313345553221010         00      000  112334455799999999999


Q ss_pred             eEEEEEEEe
Q psy3823          83 GTLLCWARN   91 (365)
Q Consensus        83 G~Y~C~a~~   91 (365)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998754

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.49  E-value=0.00073  Score=48.08  Aligned_cols=71  Identities=14%  Similarity=0.099  Sum_probs=46.1

Q ss_pred             eEEEEecCCcEEEEEEeCCC--CCcceEEEEeCCCc----CC----CC----------CCceeE--ecCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSG----TA----PR----------PLTSYS--IQDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~----~l----~~----------~~~~~~--~~~~~~~~l~i~~~   77 (365)
                      ..+.+.+|++++|.|.+.+.  ... .+.|||-...    .+    ..          ..+...  ........|.|.++
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l   87 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISAT-SVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV   87 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTS-CEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccC-eEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccc
Confidence            45777899999999995432  234 7899984211    00    00          011111  12344567999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy3823          78 SELEYGTLLCWARN   91 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~   91 (365)
                      +.+|+|.|.|.+..
T Consensus        88 ~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          88 EKQDIATYYCALWE  101 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccCcEEEEeeeC
Confidence            99999999998754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.48  E-value=0.00031  Score=49.19  Aligned_cols=69  Identities=12%  Similarity=0.345  Sum_probs=45.0

Q ss_pred             eeeecCceEEEEEEEeeeC-----CCceeEEEeCCCCCC------------C-CCCceeEeeCCCEEEEEEcCCCcccCe
Q psy3823         234 YGALRNEQVLVSCTVDANP-----QAQYFTWAFNNSDTA------------P-RPLTSYSIQDGSTSVARYTPTSELEYG  295 (365)
Q Consensus       234 ~~~~~g~~~~l~C~~~~~p-----~~~~~~W~~~~~~~~------------~-~~~~~~~~~~~~~s~l~i~~v~~~d~G  295 (365)
                      ..+.+|+.++|.|...+..     .. .+.|++......            . ....+.....+....|.|.+++.+|++
T Consensus        11 ls~~~G~svtl~C~~s~~~~~~~~~~-~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsA   89 (112)
T d1ncwl1          11 ISVTIGQPASISCKSSQRLLNSNGKT-FLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLG   89 (112)
T ss_dssp             EEEETTSCEEEEEEESSCCBCTTSCB-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEECCCCCEEEEEEECcccccCCCCc-ccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCE
Confidence            3388999999999875422     23 488987422111            0 011222234456678999999999999


Q ss_pred             EEEEEEEc
Q psy3823         296 TLLCWARN  303 (365)
Q Consensus       296 ~Y~C~a~n  303 (365)
                      .|.|...+
T Consensus        90 vYYC~~~~   97 (112)
T d1ncwl1          90 VYYCWQGT   97 (112)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEcCC
Confidence            99996643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.48  E-value=0.00023  Score=49.78  Aligned_cols=66  Identities=12%  Similarity=0.150  Sum_probs=43.9

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC---------------CC-Cc-eeEeeCCCEEEEEEcCCCcccCeEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP---------------RP-LT-SYSIQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~---------------~~-~~-~~~~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      +.+|++++|.|...+ .... +.|++......+               .. .. ...........|.|.+++.+|+|.|.
T Consensus        13 ~~~G~~vtl~C~~s~-~~~~-~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   90 (110)
T d2aq2a1          13 AVTGEKVTLSCQQTN-NHNN-MYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSVYF   90 (110)
T ss_dssp             ECTTCCEEEEEEESS-CCSE-EEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             EcCCCCEEEEEEECC-CcCc-EEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEEE
Confidence            789999999998754 3344 999973211100               00 01 11123345678999999999999999


Q ss_pred             EEEEc
Q psy3823         299 CWARN  303 (365)
Q Consensus       299 C~a~n  303 (365)
                      |.+..
T Consensus        91 Ca~~~   95 (110)
T d2aq2a1          91 CASGG   95 (110)
T ss_dssp             EEEEE
T ss_pred             EeeCC
Confidence            98764

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=9.8e-05  Score=51.13  Aligned_cols=72  Identities=14%  Similarity=0.093  Sum_probs=46.1

Q ss_pred             ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCce-eEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTS-YSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~-~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ..+..++|.|.+.++ |....+.|.++|.......... ....++.   .+.|.|..-.+.....|+|.|.+.....
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~   95 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTF   95 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeE
Confidence            345679999999885 5554799999987543322211 2234443   3456666544445678999999875443

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.47  E-value=0.00013  Score=49.44  Aligned_cols=67  Identities=12%  Similarity=0.202  Sum_probs=43.2

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce----eEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS----YSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      .++.++|.|. .+..|....++|++++.. +......    ....+++.+......+...+...|+|.+.+..
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~-~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVS-LSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEE-CCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeE-cCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECC
Confidence            3567899999 445677779999999987 6544322    12234443333333444455567999998764

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=6.3e-05  Score=51.96  Aligned_cols=70  Identities=16%  Similarity=0.215  Sum_probs=44.2

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC--ceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL--TSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .++.++|.|.+.++ |....+.|.++|........  ......++..   +.|.|....+.....|+|.|.+....
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~   94 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST   94 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCcc
Confidence            35679999999985 54447999999865433211  1122345544   45655544444466899999987543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00055  Score=43.15  Aligned_cols=58  Identities=10%  Similarity=0.234  Sum_probs=39.9

Q ss_pred             ecCCcEEEEEEeCCCCC-cceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEE
Q psy3823          25 LRNEQVLVSCTVDANPQ-AQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR   90 (365)
Q Consensus        25 ~~G~~~~l~C~~~~~p~-~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   90 (365)
                      ..|..+.|.|.....+. ...-.|+|++.. |.....     ......+.+..  .+++|.|.|+.-
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkv-l~ed~~-----~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVV-LKEDAL-----PGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEE-EECTTC-----CCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEE-ccccCC-----CCCceEEEEec--CCCCceEEEEEc
Confidence            56899999999443333 238899999998 765432     22223455654  779999999954

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.44  E-value=0.00019  Score=48.58  Aligned_cols=67  Identities=12%  Similarity=0.194  Sum_probs=42.3

Q ss_pred             CceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCce---eEeeCCCEEEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         239 NEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTS---YSIQDGSTSVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       239 g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~---~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      +..++|.|.+.++ |....+.|.++|..........   ....+++.+......+..++...|+|.+.+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECC
Confidence            4668999999986 5554899999987554332221   12334554433333444455567999998753

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.44  E-value=0.00022  Score=50.29  Aligned_cols=69  Identities=16%  Similarity=0.180  Sum_probs=45.9

Q ss_pred             eeecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC-------------CCce--eEeeCCCEEEEEEcCCCcccCeEEEE
Q psy3823         235 GALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR-------------PLTS--YSIQDGSTSVARYTPTSELEYGTLLC  299 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~~~--~~~~~~~~s~l~i~~v~~~d~G~Y~C  299 (365)
                      .+.+|+.++|.|...+. ... +.|++-.......             ..+.  ..........|.|.+++.+|+|.|.|
T Consensus        11 ~~~~G~svtl~C~~s~~-~~~-~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (115)
T d1ogad1          11 SIQEGENLTVYCNSSSV-FSS-LQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLC   88 (115)
T ss_dssp             EEETTCCEEEEEECSSC-CSC-EEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred             EECCCCCEEEEEEECCC-Cce-EEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEcc
Confidence            38899999999987543 334 9999743211110             0011  11333456789999999999999999


Q ss_pred             EEEcCC
Q psy3823         300 WARNEQ  305 (365)
Q Consensus       300 ~a~n~~  305 (365)
                      .+....
T Consensus        89 a~~~~~   94 (115)
T d1ogad1          89 AGAGSQ   94 (115)
T ss_dssp             EEECTT
T ss_pred             cccCCC
Confidence            887543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.43  E-value=0.0007  Score=47.40  Aligned_cols=68  Identities=16%  Similarity=0.300  Sum_probs=44.0

Q ss_pred             eecCceEEEEEEEeee---CC-C-ceeEEEeCCCCCCC-------------CCCceeEeeCCCEEEEEEcCCCcccCeEE
Q psy3823         236 ALRNEQVLVSCTVDAN---PQ-A-QYFTWAFNNSDTAP-------------RPLTSYSIQDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~---p~-~-~~~~W~~~~~~~~~-------------~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      +.+|+.++|.|...+.   .. . ..+.|++......+             .........++....|.|++++.+|+|.|
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Dsa~Y   92 (113)
T d1q9ra1          13 VSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLAVY   92 (113)
T ss_dssp             EETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             ECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCCeEE
Confidence            7899999999987532   11 1 14899974221100             01111223344567899999999999999


Q ss_pred             EEEEEc
Q psy3823         298 LCWARN  303 (365)
Q Consensus       298 ~C~a~n  303 (365)
                      .|.+..
T Consensus        93 yCA~~~   98 (113)
T d1q9ra1          93 YCKQSY   98 (113)
T ss_dssp             EEEECS
T ss_pred             EecccC
Confidence            998653

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.42  E-value=6.4e-05  Score=52.15  Aligned_cols=83  Identities=17%  Similarity=0.241  Sum_probs=50.9

Q ss_pred             CCCCeEEEEcCCccCccceecCCcEEEEEEEEe-cCCCCeeEEEeCCeEEeeCCCCc-------eEEeeceEEEeeecCC
Q psy3823         114 VDKPSVQIKLGRNLNASVLNEGVDIYFDCHIQA-NPPYKKLIWTHNGITISNNASAG-------RIITNQTLVLQSVTRH  185 (365)
Q Consensus       114 ~~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~~i~W~~~~~~l~~~~~~~-------~~~~~~~l~i~~~~~~  185 (365)
                      ..+|.+.+.+.+    ..-..++.++|.|.+.+ +|....|.|.+||..+.......       .....+.|.+......
T Consensus         3 ~~~P~V~v~~ps----~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~   78 (104)
T d1nfde2           3 KSSPKVTVFPPS----PEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWK   78 (104)
T ss_dssp             CBCCEEECCCCC----HHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHH
T ss_pred             CcCCEEEEECCC----HHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcC
Confidence            346666553322    11124567999999998 56666799999999886322111       1111234455544445


Q ss_pred             CCeEEEEEEEcCCCC
Q psy3823         186 SGGLYACSAINSQGE  200 (365)
Q Consensus       186 d~G~Y~C~~~~~~~~  200 (365)
                      +...|+|.+.+....
T Consensus        79 ~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          79 SHNRVSCQVTHEGET   93 (104)
T ss_dssp             TCSCEEEEEECTTTT
T ss_pred             CCCEEEEEEEECCCc
Confidence            667899999987643

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00037  Score=49.35  Aligned_cols=68  Identities=12%  Similarity=0.070  Sum_probs=44.6

Q ss_pred             eecCceEEEEEEEeeeCCCc--eeEEEeCCCCCCCC--------------CCce--eEeeCCCEEEEEEcCCCcccCeEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ--YFTWAFNNSDTAPR--------------PLTS--YSIQDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~--~~~W~~~~~~~~~~--------------~~~~--~~~~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      +.+|+.++|.|.......+.  .+.|++.......+              ..+.  ....+.....|.|.+++.+|+|.|
T Consensus        11 ~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   90 (118)
T d1i8lc_          11 ASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLY   90 (118)
T ss_dssp             CCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCEEE
T ss_pred             EeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCEEE
Confidence            77899999999985433221  48899753221110              0000  013334567899999999999999


Q ss_pred             EEEEEc
Q psy3823         298 LCWARN  303 (365)
Q Consensus       298 ~C~a~n  303 (365)
                      .|.+..
T Consensus        91 yCa~~~   96 (118)
T d1i8lc_          91 ICKVEL   96 (118)
T ss_dssp             EEEEEE
T ss_pred             EEeEec
Confidence            998865

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00028  Score=49.97  Aligned_cols=68  Identities=12%  Similarity=0.054  Sum_probs=43.9

Q ss_pred             eecCceEEEEEEEeeeCCCc--eeEEEeCCCCCCCC--------------CCc--eeEeeCCCEEEEEEcCCCcccCeEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ--YFTWAFNNSDTAPR--------------PLT--SYSIQDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~--~~~W~~~~~~~~~~--------------~~~--~~~~~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      +..|+.++|.|.........  .+.|++.......+              ..+  .....+.....|.|.+++.+|+|.|
T Consensus        11 ~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   90 (117)
T d1dqta_          11 ASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLY   90 (117)
T ss_dssp             CCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             EcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEeE
Confidence            78899999999986432222  47899742211000              000  0113334567899999999999999


Q ss_pred             EEEEEc
Q psy3823         298 LCWARN  303 (365)
Q Consensus       298 ~C~a~n  303 (365)
                      .|.+..
T Consensus        91 yCa~~~   96 (117)
T d1dqta_          91 LCKVEL   96 (117)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            998763

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.41  E-value=0.00063  Score=47.64  Aligned_cols=67  Identities=13%  Similarity=0.327  Sum_probs=44.6

Q ss_pred             eecCceEEEEEEEeeeC-----CCceeEEEeCCCCCCCC-------------CCceeEeeCCCEEEEEEcCCCcccCeEE
Q psy3823         236 ALRNEQVLVSCTVDANP-----QAQYFTWAFNNSDTAPR-------------PLTSYSIQDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p-----~~~~~~W~~~~~~~~~~-------------~~~~~~~~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      +.+|+.++|.|...+..     ... +.|++......+.             ..++.....+....|.|.+++.+|++.|
T Consensus        14 ~~~G~svtl~C~~s~~~~~~~~~~~-~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavY   92 (113)
T d1n4xl_          14 VSLGDQASISCRSSQTIVHNNGNTY-LEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIY   92 (113)
T ss_dssp             ECTTCCEEEEEEESSCCCCTTSCCC-EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCEEE
T ss_pred             ECCCCCEEEEEEeccccccCCCceE-eEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCEEE
Confidence            88999999999985422     233 8999743211110             1111223345667899999999999999


Q ss_pred             EEEEEc
Q psy3823         298 LCWARN  303 (365)
Q Consensus       298 ~C~a~n  303 (365)
                      .|...+
T Consensus        93 yCa~~~   98 (113)
T d1n4xl_          93 YCFQGS   98 (113)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            996554

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.40  E-value=3.1e-05  Score=53.78  Aligned_cols=74  Identities=18%  Similarity=0.196  Sum_probs=46.0

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCce-eEeeCCCEE---EEEEcCCCcccCeEEEEEEEcCCccceec
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTS-YSIQDGSTS---VARYTPTSELEYGTLLCWARNEQGSQRTP  311 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~s---~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~  311 (365)
                      .+..+.|.|.+.++ |....|.|.++|.......... ....++..+   .|.|....+.+...|+|.|.+......++
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~~k~   97 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKS   97 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCCC
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcEEEE
Confidence            35678999999885 5444799999887544322211 223455543   34444333445668999999987655443

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00011  Score=50.60  Aligned_cols=70  Identities=16%  Similarity=0.240  Sum_probs=44.2

Q ss_pred             ecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         237 LRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      ..++.++|.|.+.++ |....|.|..++...... .......++.   .+.|.|..-.. +.|.|+|.|.+.....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~-~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVL-TVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSST   91 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEE-ECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccce-eeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence            357889999999885 555579998776432111 1111234444   35677765554 3678999999865543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.39  E-value=0.00074  Score=48.06  Aligned_cols=67  Identities=12%  Similarity=0.085  Sum_probs=44.8

Q ss_pred             eecCceEEEEEEEeeeC--CCceeEEEeCCCCCC------------------CCCCceeEe--eCCCEEEEEEcCCCccc
Q psy3823         236 ALRNEQVLVSCTVDANP--QAQYFTWAFNNSDTA------------------PRPLTSYSI--QDGSTSVARYTPTSELE  293 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p--~~~~~~W~~~~~~~~------------------~~~~~~~~~--~~~~~s~l~i~~v~~~d  293 (365)
                      ..+|+.++|.|.+.|..  .. .+.|++......                  ....++...  ...+...|.|.+++.+|
T Consensus        13 ~~~g~t~~LsC~~sg~~~s~~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~D   91 (123)
T d1hxmb1          13 KTLSKTARLECVVSGITISAT-SVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQD   91 (123)
T ss_dssp             EETTCCEEEEEEEESSCTTTS-CEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eCCCCCEEEEEEEcCCCcccC-eEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccccc
Confidence            67899999999998753  33 488987321100                  001122222  23456789999999999


Q ss_pred             CeEEEEEEEc
Q psy3823         294 YGTLLCWARN  303 (365)
Q Consensus       294 ~G~Y~C~a~n  303 (365)
                      ++.|.|-+..
T Consensus        92 sa~YyCA~~~  101 (123)
T d1hxmb1          92 IATYYCALWE  101 (123)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcEEEEeeeC
Confidence            9999998754

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00041  Score=46.65  Aligned_cols=72  Identities=15%  Similarity=0.109  Sum_probs=50.3

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      .+..+.+.+|+++.+.|.+. .|......|..++...+..+.........   =++|.+++..+.|.|.|.|....
T Consensus        11 ~p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~---Gf~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          11 IPEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRK---GFIISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             SCEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTT---EEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCC---CEEEeCCCcccCeEEEEEEEECC
Confidence            34567789999999999974 67772334555665523444443444443   37899999999999999998653

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=0.00068  Score=47.10  Aligned_cols=71  Identities=11%  Similarity=0.106  Sum_probs=46.9

Q ss_pred             eeecCceEEEEEEEeee--CCCceeEEEeCCCCCCC--------CC--------CceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         235 GALRNEQVLVSCTVDAN--PQAQYFTWAFNNSDTAP--------RP--------LTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~--------~~--------~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      .+.+|++++|.|...+.  .... ..|.+.......        ..        ++..+  ........|.|.+++.+|+
T Consensus         6 ~~~eG~svtl~C~ys~~~~~~~~-~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDs   84 (110)
T d1u9ka_           6 DLVEGQTLTVKCPFNIMKYANSQ-KAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDS   84 (110)
T ss_dssp             EECTTCCEEEEEECCHHHHTTSE-EEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             cCCCCCCEEEEEEECCCCccCCc-EEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCC
Confidence            37899999999998754  3343 889874221100        00        11112  2234567799999999999


Q ss_pred             eEEEEEEEcCCc
Q psy3823         295 GTLLCWARNEQG  306 (365)
Q Consensus       295 G~Y~C~a~n~~g  306 (365)
                      |.|.|.......
T Consensus        85 a~YyCa~~~~~~   96 (110)
T d1u9ka_          85 GLYRCVIYHPPN   96 (110)
T ss_dssp             EEEEEEEECTTS
T ss_pred             EEEEEEEeCCCC
Confidence            999999865544

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.35  E-value=0.00035  Score=48.99  Aligned_cols=66  Identities=18%  Similarity=0.288  Sum_probs=42.6

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC-----------------CCCceeE-eeCCCEEEEEEcCCCcccCeEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP-----------------RPLTSYS-IQDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~-----------------~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      +.+|+.++|.|...+ .... +.|++......+                 ...+... ......+.|.|.+++.+|+|.|
T Consensus        11 ~~~G~svtl~C~~~~-~~~~-i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   88 (112)
T d1kgce1          11 AKRGQDVALRCDPIS-GHVS-LFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVY   88 (112)
T ss_dssp             EETTCCEEEEEECCT-TCCE-EEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEEE
T ss_pred             ECCCCCEEEEEEECC-CCCE-EEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEEE
Confidence            789999999998532 3344 999874211100                 0011111 1233456799999999999999


Q ss_pred             EEEEEc
Q psy3823         298 LCWARN  303 (365)
Q Consensus       298 ~C~a~n  303 (365)
                      .|.+.-
T Consensus        89 yCa~~~   94 (112)
T d1kgce1          89 LCASSL   94 (112)
T ss_dssp             EEEEES
T ss_pred             EEeeeC
Confidence            998863

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.34  E-value=0.00031  Score=49.24  Aligned_cols=72  Identities=13%  Similarity=0.127  Sum_probs=44.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCcceEEEEeCCCcC-C-------CCCCce-------eE-ecCCeEEEEEEccCCCCCC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQAQYFTWAFNNSGT-A-------PRPLTS-------YS-IQDGSTSVARYTPTSELEY   82 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~~~~~-l-------~~~~~~-------~~-~~~~~~~~l~i~~~~~~d~   82 (365)
                      |....+.+|++++|.|.....-.. .+.|||-.... +       ......       .. ........|.|.....+|+
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~ds   86 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCILKNSQYP-WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG   86 (112)
T ss_dssp             CSEEECCTTCCEEEEEEESCTTCC-EEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSC
T ss_pred             CCeEEECCCCCEEEEEEEecCCCC-cEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCC
Confidence            456778999999999994433345 78999963210 1       011111       00 0001113588888899999


Q ss_pred             eEEEEEEEe
Q psy3823          83 GTLLCWARN   91 (365)
Q Consensus        83 G~Y~C~a~~   91 (365)
                      +.|.|....
T Consensus        87 a~Y~Ca~~~   95 (112)
T d1fo0b_          87 RTLYCTCSA   95 (112)
T ss_dssp             EEEEEEEES
T ss_pred             ccEEEEEec
Confidence            999998653

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.34  E-value=1.3e-05  Score=54.80  Aligned_cols=70  Identities=11%  Similarity=0.181  Sum_probs=44.8

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCC--CCCC-----------CCCCceeE--eeCCCEEEEEEcCCCcccCeEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNN--SDTA-----------PRPLTSYS--IQDGSTSVARYTPTSELEYGTLLCW  300 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~--~~~~-----------~~~~~~~~--~~~~~~s~l~i~~v~~~d~G~Y~C~  300 (365)
                      |.+|+.++|.|.... ... .+.|++..  ....           ...++...  ........|.|.+++.+|+|.|.|-
T Consensus         5 V~eG~~vtL~C~~~~-~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA   82 (96)
T d1ymmd1           5 IQEGENATMNCSYKT-SIN-NLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCA   82 (96)
T ss_dssp             CSSCCCCCBCCBCSS-CEE-EEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEE
T ss_pred             ECCCCCEEEEEEEeC-Ccc-cEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEe
Confidence            788999999998753 233 49999732  1110           00111111  2223345699999999999999998


Q ss_pred             EEcCCcc
Q psy3823         301 ARNEQGS  307 (365)
Q Consensus       301 a~n~~g~  307 (365)
                      +....|.
T Consensus        83 ~~~~~g~   89 (96)
T d1ymmd1          83 TDTTSGT   89 (96)
T ss_dssp             EEETTSC
T ss_pred             EecCCCC
Confidence            8765553

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00083  Score=47.13  Aligned_cols=71  Identities=13%  Similarity=0.075  Sum_probs=43.8

Q ss_pred             eeecCceEEEEEEEeee---CC--CceeEEEeCCCCCC--------------CCCCceeE--eeCCCEEEEEEcCCCccc
Q psy3823         235 GALRNEQVLVSCTVDAN---PQ--AQYFTWAFNNSDTA--------------PRPLTSYS--IQDGSTSVARYTPTSELE  293 (365)
Q Consensus       235 ~~~~g~~~~l~C~~~~~---p~--~~~~~W~~~~~~~~--------------~~~~~~~~--~~~~~~s~l~i~~v~~~d  293 (365)
                      .+.+|+.+.|.|.....   +.  ...+.|++......              ....+..+  ........|.|.+++.+|
T Consensus        11 ~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   90 (118)
T d1qfoa_          11 QGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPED   90 (118)
T ss_dssp             EEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGGG
T ss_pred             EEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCChhH
Confidence            38899999999998631   11  11456776432111              01111222  112234569999999999


Q ss_pred             CeEEEEEEEcCC
Q psy3823         294 YGTLLCWARNEQ  305 (365)
Q Consensus       294 ~G~Y~C~a~n~~  305 (365)
                      +|.|.|.+....
T Consensus        91 sG~Y~C~v~~~~  102 (118)
T d1qfoa_          91 SGTYNFRFEISD  102 (118)
T ss_dssp             CEEEEEEEECC-
T ss_pred             CEEEEEEEEeCC
Confidence            999999997654

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.31  E-value=0.00015  Score=49.43  Aligned_cols=67  Identities=10%  Similarity=0.063  Sum_probs=43.5

Q ss_pred             CCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCC-------ceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          27 NEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPL-------TSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        27 G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~-------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      .+.++|.|. .+..|....++|++|+.. +....       ......+++........+...+...|+|.+.+...
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~-~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s~   88 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGG-GGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIAT   88 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSS-SCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCcc-ccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            458999999 556677779999999876 43211       11223455554444444555566789999987543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=0.0003  Score=48.86  Aligned_cols=70  Identities=17%  Similarity=0.254  Sum_probs=43.4

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCce---eEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTS---YSIQDGST---SVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~---~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .++.++|.|.+.++ |....|.|.++|..........   ....+++.   +.|.|..-.+.....|+|.|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            35679999999885 5544799999886433211111   11234443   45666554444467899999986543

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=0.0002  Score=49.27  Aligned_cols=78  Identities=14%  Similarity=0.200  Sum_probs=44.3

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCccceecEE
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGSQRTPCT  313 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  313 (365)
                      .++.++|.|.+.|+ |....|.|..++..... ........++.   .+.|.|..-.. +.+.|+|.|.+..+..  .+.
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~-~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~--~v~   94 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV-HTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASST--KVD   94 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTE-EECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGTE--EEE
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCccCCe-EecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCCE--EEE
Confidence            46789999999985 54447999665532111 11112234443   35677766555 3578999999875543  334


Q ss_pred             EEEEcC
Q psy3823         314 FHVVKA  319 (365)
Q Consensus       314 l~v~~~  319 (365)
                      ..+.+.
T Consensus        95 ~~i~p~  100 (102)
T d1mjuh2          95 KKIEPR  100 (102)
T ss_dssp             EECCCC
T ss_pred             EEecCC
Confidence            444443

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00074  Score=46.30  Aligned_cols=70  Identities=13%  Similarity=0.295  Sum_probs=42.8

Q ss_pred             cCceEEEEEEEeee-CCC-ceeEEEeCCCCCCCCCCceeEeeCCC---EEEEEEcCCCcccCeEEEEEEEcCCcc
Q psy3823         238 RNEQVLVSCTVDAN-PQA-QYFTWAFNNSDTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQGS  307 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~-~~~~W~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~v~~~d~G~Y~C~a~n~~g~  307 (365)
                      .++.+.|.|.+.++ |+. ..+.|.+++..............++.   .+.|.|....+.....|+|.|.+....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            46789999999995 554 34677666543221111112234444   356667666555567899999886544

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.26  E-value=0.00027  Score=49.72  Aligned_cols=67  Identities=12%  Similarity=0.137  Sum_probs=43.3

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC----------------CCceeE-eeCCCEEEEEEcCCCcccCeEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR----------------PLTSYS-IQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~----------------~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      +.+|++++|.|... ..... +.|++......+.                ...... ......+.|.|.+++.+|+|.|.
T Consensus        11 ~~~G~svtl~C~~s-~~~~~-~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~Yy   88 (114)
T d1ogae1          11 RKEGQNVTLSCEQN-LNHDA-MYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYL   88 (114)
T ss_dssp             EETTCCEEECCEEC-SCCSE-EEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEE
T ss_pred             EcCCCCEEEEEEEe-cCCCc-EEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeEE
Confidence            88999999999975 33344 9999743211000                000111 12233457999999999999999


Q ss_pred             EEEEcC
Q psy3823         299 CWARNE  304 (365)
Q Consensus       299 C~a~n~  304 (365)
                      |.+...
T Consensus        89 Ca~~~~   94 (114)
T d1ogae1          89 CASSSR   94 (114)
T ss_dssp             EEEESS
T ss_pred             EeeccC
Confidence            977643

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.20  E-value=0.00051  Score=48.01  Aligned_cols=66  Identities=12%  Similarity=0.185  Sum_probs=42.2

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCC---------------C--CCceeEe-eCCCEEEEEEcCCCcccCeEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAP---------------R--PLTSYSI-QDGSTSVARYTPTSELEYGTL  297 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~---------------~--~~~~~~~-~~~~~s~l~i~~v~~~d~G~Y  297 (365)
                      +.+|+.++|.|...+ .... +.|++......+               +  ..+.... .+...+.|.|.+++.+|+|.|
T Consensus        11 ~~~G~svtl~C~~~~-~~~~-~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~Y   88 (111)
T d2esve1          11 IEKGQTVTLRCDPIS-GHDN-LYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVY   88 (111)
T ss_dssp             EETTCCEEEEEECCT-TCSE-EEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEEE
T ss_pred             ECCCCCEEEEEEECC-CCce-EEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCceE
Confidence            889999999997543 2334 999864211100               0  0111111 123356799999999999999


Q ss_pred             EEEEEc
Q psy3823         298 LCWARN  303 (365)
Q Consensus       298 ~C~a~n  303 (365)
                      .|.+..
T Consensus        89 yCa~~~   94 (111)
T d2esve1          89 FCASSQ   94 (111)
T ss_dssp             EEEEES
T ss_pred             EEeeeC
Confidence            998764

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00053  Score=47.33  Aligned_cols=71  Identities=20%  Similarity=0.379  Sum_probs=43.4

Q ss_pred             EecCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCce--eEecCCe---EEEEEEccCCCC--CCeEEEEEEEeCCCC
Q psy3823          24 ALRNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTS--YSIQDGS---TSVARYTPTSEL--EYGTLLCWARNEQGN   95 (365)
Q Consensus        24 v~~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~--~~~~~~~---~~~l~i~~~~~~--d~G~Y~C~a~~~~~~   95 (365)
                      ....+.++|.|. .+..|....|+|.+++.. .......  ....++.   .+.|.+....+.  ....|+|.+.+..+.
T Consensus        18 ~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~-~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          18 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNS-DISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSC-EECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             cCCCCceEEEEEEecccCCcEEEEEEECCcc-ccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            345788999999 555777679999999876 4432211  1123332   345666555543  224799999987643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.19  E-value=0.0016  Score=45.06  Aligned_cols=71  Identities=11%  Similarity=0.116  Sum_probs=45.4

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc-------CCC-CC-C---------cee-E-ecCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG-------TAP-RP-L---------TSY-S-IQDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~-------~l~-~~-~---------~~~-~-~~~~~~~~l~i~~~   77 (365)
                      ....++.|+++.|.|++.+..  .. .+.|+|....       .+. .. .         +.. . ....+.-.|.+.++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y-~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L   86 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEY-YMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSL   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGS-EEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCC-ceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEeccccc
Confidence            445678999999999965543  33 8899885321       011 11 1         011 1 12234457999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy3823          78 SELEYGTLLCWARN   91 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~   91 (365)
                      +.+|++.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (117)
T d1jpth1          87 RAEDTAVYYCARDT  100 (117)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCceEEEEeecC
Confidence            99999999996543

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00027  Score=48.60  Aligned_cols=69  Identities=19%  Similarity=0.178  Sum_probs=43.3

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCC-CceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRP-LTSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      .++.++|.|.+.++ |....+.|.++|....... .......+++.   +.|.|..-.+.....|+|.|.+..-
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            46789999999985 5554799999886432111 11122445554   4455554444445679999998643

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.18  E-value=0.00032  Score=48.21  Aligned_cols=68  Identities=24%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC-ceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL-TSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      .++.++|.|.+.++ |....+.|.++|........ ......+++.   +.|.|..-.+.....|+|.|.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999885 55447999998864322111 1122344543   455555444444668999999864

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.18  E-value=0.00048  Score=48.32  Aligned_cols=68  Identities=9%  Similarity=0.102  Sum_probs=43.7

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC----------------CCceeE-eeCCCEEEEEEcCCCcccCeEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR----------------PLTSYS-IQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~----------------~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      +.+|+.++|.|.... .... +.|++......+.                ..+... ........|.|.+++.+|+|.|.
T Consensus        13 ~~~G~~v~l~C~~~~-~~~~-~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   90 (113)
T d1nfdb1          13 KEKGGRSVLTCIPIS-GHSN-VVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYF   90 (113)
T ss_dssp             EETTCCCEEEEECCT-TCCE-EEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEEEC
T ss_pred             EeCCCCEEEEEEeCC-CCCE-EEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCceeEE
Confidence            789999999998643 2344 9999753211110                001100 22334567999999999999999


Q ss_pred             EEEEcCC
Q psy3823         299 CWARNEQ  305 (365)
Q Consensus       299 C~a~n~~  305 (365)
                      |.+....
T Consensus        91 Ca~~~~~   97 (113)
T d1nfdb1          91 CASSLRW   97 (113)
T ss_dssp             EEEESSS
T ss_pred             EEeecCC
Confidence            9876433

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00034  Score=47.97  Aligned_cols=68  Identities=18%  Similarity=0.228  Sum_probs=43.3

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC-ceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL-TSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      ..+.++|.|.+.++ |....+.|.++|........ ......+++.   +.|.|..-.+.....|+|.|.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35678999999985 65558999998864332111 1122345543   455555444445678999999864

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.18  E-value=0.0016  Score=45.05  Aligned_cols=72  Identities=11%  Similarity=0.122  Sum_probs=45.5

Q ss_pred             EEEEecCCcEEEEEEeCCC--CCcceEEEEeCC--CcC-----CC-CCC----------cee-Ee-cCCeEEEEEEccCC
Q psy3823          21 IYGALRNEQVLVSCTVDAN--PQAQYFTWAFNN--SGT-----AP-RPL----------TSY-SI-QDGSTSVARYTPTS   78 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~--~~~-----l~-~~~----------~~~-~~-~~~~~~~l~i~~~~   78 (365)
                      .-.+..|+++.|.|++.+.  ... .+.|+|..  +.+     +. ...          +.. .. .....-.|.|.+++
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y-~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~   87 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTEL-PVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR   87 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCC-CEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC
Confidence            3457889999999995443  333 78898842  220     11 110          011 11 23344579999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy3823          79 ELEYGTLLCWARNEQ   93 (365)
Q Consensus        79 ~~d~G~Y~C~a~~~~   93 (365)
                      .+|++.|.|......
T Consensus        88 ~eDtAvYYCA~~~~~  102 (117)
T d1iqdb1          88 SDDTAVYYCAVPDPD  102 (117)
T ss_dssp             GGGCEEEEEEECSSS
T ss_pred             cCcceEEEEeEcCCC
Confidence            999999999865443

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0013  Score=41.39  Aligned_cols=59  Identities=10%  Similarity=0.217  Sum_probs=39.1

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWAR  302 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~  302 (365)
                      -..|..+.|+|.....+.+. .-.|.++|..... ..     ..+....+.|..  .+++|+|.|...
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~e-d~-----~~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE-DA-----LPGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEEC-TT-----CCCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccc-cC-----CCCCceEEEEec--CCCCceEEEEEc
Confidence            34678899999997654433 6889998874322 11     122334466654  678999999865

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0003  Score=48.52  Aligned_cols=70  Identities=14%  Similarity=0.246  Sum_probs=42.1

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCCccc
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQGSQ  308 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~g~~  308 (365)
                      .+..++|.|.+.++ |....|.|..++..............++..   +.|.|..-.. ....|+|.|.+..+..
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSNT   92 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCCE
Confidence            46789999999885 554479997765432111111122344543   4566554433 2567999999875543

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.15  E-value=0.00059  Score=47.84  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=43.4

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeC--CCCCC--------------CCCCceeE-eeCCCEEEEEEcCCCcccCeEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFN--NSDTA--------------PRPLTSYS-IQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~--~~~~~--------------~~~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      +.+|+.++|.|...+ .... +.|++.  |....              ....+... ..+.....|.|.+++.+|+|.|.
T Consensus        11 ~~~G~svtl~C~~~~-~~~~-~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (113)
T d2ntsp1          11 KTRGQQVTLSCSPIS-GHRS-VSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYL   88 (113)
T ss_dssp             EETTCCEEEEEECST-TCCE-EEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECC-CCCE-EEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceeee
Confidence            789999999998643 2344 899973  21100              00011111 22334567999999999999999


Q ss_pred             EEEEcC
Q psy3823         299 CWARNE  304 (365)
Q Consensus       299 C~a~n~  304 (365)
                      |.+...
T Consensus        89 CA~~~~   94 (113)
T d2ntsp1          89 CASSLA   94 (113)
T ss_dssp             EEEESS
T ss_pred             eeeeCC
Confidence            988754

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.14  E-value=0.0025  Score=44.35  Aligned_cols=67  Identities=12%  Similarity=0.222  Sum_probs=42.7

Q ss_pred             EEEEecCCcEEEEEEeCCCC--CcceEEEEeCCC--cC-----CCCC----------Ccee-Ee-cCCeEEEEEEccCCC
Q psy3823          21 IYGALRNEQVLVSCTVDANP--QAQYFTWAFNNS--GT-----APRP----------LTSY-SI-QDGSTSVARYTPTSE   79 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~--~~-----l~~~----------~~~~-~~-~~~~~~~l~i~~~~~   79 (365)
                      .-.++.|++++|.|++.+..  .. .+.|+|...  .+     +...          .+.. .. .....-.|.|.+++.
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y-~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~   87 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDY-YWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSC-CEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCccC-cceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc
Confidence            34578899999999955433  33 788988522  10     0100          0111 11 233445699999999


Q ss_pred             CCCeEEEEE
Q psy3823          80 LEYGTLLCW   88 (365)
Q Consensus        80 ~d~G~Y~C~   88 (365)
                      +|++.|.|.
T Consensus        88 eDtA~YYCA   96 (120)
T d1dn0b1          88 ADTAVYYCA   96 (120)
T ss_dssp             GGCEEEEEE
T ss_pred             ccccEEEEE
Confidence            999999994

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.14  E-value=0.00039  Score=47.77  Aligned_cols=67  Identities=22%  Similarity=0.275  Sum_probs=42.9

Q ss_pred             CceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC-ceeEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         239 NEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL-TSYSIQDGST---SVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       239 g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      .+.+.|.|.+.++ |....+.|.++|........ ......++..   +.|.|....+.....|+|.|.+..
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            5678999999886 44447999999864321111 1122445554   446666555555668999999864

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00011  Score=50.52  Aligned_cols=67  Identities=13%  Similarity=0.174  Sum_probs=42.5

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCCe---EEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      .++.++|.|. .+..|....|.|.+++.. ...........++.   .+.|.|..-.+. .|.|+|.+.+...
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~-~~~~~~~~~~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~   89 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALS-SGVLTVSAVLQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKS   89 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCC-TTEEECCCEEETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCc-ccceeeeeecCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCC
Confidence            5789999999 444677679999887754 32111111223332   346666655553 5789999998643

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.13  E-value=0.0013  Score=46.07  Aligned_cols=68  Identities=12%  Similarity=0.137  Sum_probs=43.4

Q ss_pred             eecCceEEEEEEEeeeCC--C-ceeEEEeCCCCCCCC-----------------CCceeEe--eCCCEEEEEEcCCCccc
Q psy3823         236 ALRNEQVLVSCTVDANPQ--A-QYFTWAFNNSDTAPR-----------------PLTSYSI--QDGSTSVARYTPTSELE  293 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~--~-~~~~W~~~~~~~~~~-----------------~~~~~~~--~~~~~s~l~i~~v~~~d  293 (365)
                      +.+|+.+.|.|.+.|+..  . ..+.|++.......+                 ..+..+.  ...+...|.|++++.+|
T Consensus        12 v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eD   91 (120)
T d2agjh1          12 VKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVD   91 (120)
T ss_dssp             CCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGG
T ss_pred             ECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeecc
Confidence            778999999999987532  1 137899742111100                 0111111  22345679999999999


Q ss_pred             CeEEEEEEEc
Q psy3823         294 YGTLLCWARN  303 (365)
Q Consensus       294 ~G~Y~C~a~n  303 (365)
                      ++.|.|-...
T Consensus        92 sAvYyCAr~~  101 (120)
T d2agjh1          92 TATYYCARTS  101 (120)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEeeEecC
Confidence            9999996543

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.13  E-value=0.00063  Score=48.13  Aligned_cols=83  Identities=19%  Similarity=0.207  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCccCccceecCCcEEEEEEEEec-CC--CCeeEEEeCCeEEeeCCCCc-eEEe------eceEEEeeecC
Q psy3823         115 DKPSVQIKLGRNLNASVLNEGVDIYFDCHIQAN-PP--YKKLIWTHNGITISNNASAG-RIIT------NQTLVLQSVTR  184 (365)
Q Consensus       115 ~~p~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~--~~~i~W~~~~~~l~~~~~~~-~~~~------~~~l~i~~~~~  184 (365)
                      ..|.+.+.+.+  ....+..++.++|.|.+.+. |.  ...+.|.+||..+....... ....      .+.|.|..-..
T Consensus        14 ~~PsV~i~pPs--~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW   91 (119)
T d1igtb3          14 GGPSVFIFPPK--IKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDW   91 (119)
T ss_dssp             CCCEEEEECCC--HHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHH
T ss_pred             cCCEEEEECCC--hHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHh
Confidence            35666655432  11234567889999999984 42  34578999998875432211 1112      23455544444


Q ss_pred             CCCeEEEEEEEcCCC
Q psy3823         185 HSGGLYACSAINSQG  199 (365)
Q Consensus       185 ~d~G~Y~C~~~~~~~  199 (365)
                      .....|+|.+.+...
T Consensus        92 ~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          92 MSGKEFKCKVNNKDL  106 (119)
T ss_dssp             HTTCEEEEEEECTTC
T ss_pred             CCCCeEEEEEEECCC
Confidence            556789999998654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.09  E-value=0.0017  Score=45.32  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=43.0

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCC---------------CC-CCcee-EeeCCCEEEEEEcCCCcccCeEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTA---------------PR-PLTSY-SIQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~---------------~~-~~~~~-~~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      +.+|+.++|.|.... .... +.|++......               .. ..... ...+.....|.|.+++.+|+|.|.
T Consensus        12 ~~~G~~v~l~C~~~~-~~~~-~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   89 (113)
T d1j8he1          12 KRTGEKVFLECVQDM-DHEN-MFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMYL   89 (113)
T ss_dssp             EETTCCEEECEEESS-CCSE-EEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEEcC-CccE-EEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccEE
Confidence            789999999998642 2344 88987321100               00 01111 122334567999999999999999


Q ss_pred             EEEEcC
Q psy3823         299 CWARNE  304 (365)
Q Consensus       299 C~a~n~  304 (365)
                      |.+...
T Consensus        90 Ca~~~~   95 (113)
T d1j8he1          90 CASSST   95 (113)
T ss_dssp             EEEECT
T ss_pred             eeEccC
Confidence            988643

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00084  Score=46.48  Aligned_cols=69  Identities=12%  Similarity=0.149  Sum_probs=46.5

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeE----ecCC---eEEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYS----IQDG---STSVARYTPTSELEYGTLLCWARNEQGN   95 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~----~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~~   95 (365)
                      .++.++|.|. .+..|....|+|++|+.. .........    ..++   ..+.|.|..-.++....|+|.+.+....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~-~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~   95 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNAL-QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS   95 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEE-CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEE-CCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            3678999999 445676669999999987 554432211    1233   3346777666666677899999986544

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.08  E-value=0.0026  Score=43.92  Aligned_cols=69  Identities=13%  Similarity=0.167  Sum_probs=44.6

Q ss_pred             EEEEecCCcEEEEEEeCCC--CCcceEEEEeCC--CcCC-------CCCC---------ce-eE-ecCCeEEEEEEccCC
Q psy3823          21 IYGALRNEQVLVSCTVDAN--PQAQYFTWAFNN--SGTA-------PRPL---------TS-YS-IQDGSTSVARYTPTS   78 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~--~~~l-------~~~~---------~~-~~-~~~~~~~~l~i~~~~   78 (365)
                      .-.+..|++++|.|++.+.  ... .+.|+|-.  +. +       ....         +. .. ......-.|+|.+++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkg-lEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~   86 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDY-YWTWVRQPPGRG-LEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVT   86 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTS-EEEEEEECTTSC-CEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEeeecCCCC-cceeceECCCCc-ceeeeeecccccceeccceeecceeecccchhhhhccccccc
Confidence            4457889999999995443  344 88898842  21 1       1111         11 11 123345579999999


Q ss_pred             CCCCeEEEEEEEe
Q psy3823          79 ELEYGTLLCWARN   91 (365)
Q Consensus        79 ~~d~G~Y~C~a~~   91 (365)
                      .+|++.|.|....
T Consensus        87 ~eDtAvYyCAr~~   99 (116)
T d7fabh1          87 AADTAVYYCARNL   99 (116)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEeeeec
Confidence            9999999997543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00063  Score=46.98  Aligned_cols=68  Identities=16%  Similarity=0.201  Sum_probs=43.4

Q ss_pred             eecCCcEEEEEEEEec-CCC--CeeEEEeCCeEEeeCCCC-------ceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         132 LNEGVDIYFDCHIQAN-PPY--KKLIWTHNGITISNNASA-------GRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~~-p~~--~~i~W~~~~~~l~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      +..++.++|.|.+.+. |..  .++.|.+++..+......       +.....+.|.|.....+....|+|.+.+...
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            4567899999999974 432  447799999877532111       1111233455555544556689999998754

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.05  E-value=0.0017  Score=44.87  Aligned_cols=70  Identities=11%  Similarity=0.164  Sum_probs=46.2

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCC-------C----------CCceeE--eeCCCEEEEEEcCCCcccCe
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAP-------R----------PLTSYS--IQDGSTSVARYTPTSELEYG  295 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~-------~----------~~~~~~--~~~~~~s~l~i~~v~~~d~G  295 (365)
                      +.+|+++.|+|.+.|+.-.. .+.|++.......       .          ..+..+  ....+...|.|++++.+|.+
T Consensus        12 vkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDtA   91 (116)
T d7fabh1          12 VRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTA   91 (116)
T ss_dssp             ECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccce
Confidence            78899999999999865443 5888874211100       0          011112  22345667999999999999


Q ss_pred             EEEEEEEcCC
Q psy3823         296 TLLCWARNEQ  305 (365)
Q Consensus       296 ~Y~C~a~n~~  305 (365)
                      .|.|......
T Consensus        92 vYyCAr~~~~  101 (116)
T d7fabh1          92 VYYCARNLIA  101 (116)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEeeeecCC
Confidence            9999765443

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.05  E-value=0.0047  Score=42.57  Aligned_cols=69  Identities=12%  Similarity=0.132  Sum_probs=44.0

Q ss_pred             EEEEecCCcEEEEEEeCCCCCc-ceEEEEeCC--CcCC-------CCCC---------cee-E-ecCCeEEEEEEccCCC
Q psy3823          21 IYGALRNEQVLVSCTVDANPQA-QYFTWAFNN--SGTA-------PRPL---------TSY-S-IQDGSTSVARYTPTSE   79 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~--~~~l-------~~~~---------~~~-~-~~~~~~~~l~i~~~~~   79 (365)
                      .-.++.|++++|.|++.+..-. ..+.|+|.-  +. +       ....         +.. . ....+.-.|.+.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkg-lewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~   87 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKG-LEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSC-CEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcc-eeeeeccccccccccccccccceEEecccccceeecccccccc
Confidence            3457899999999996554321 278898842  21 1       1110         111 1 1223445799999999


Q ss_pred             CCCeEEEEEEE
Q psy3823          80 LEYGTLLCWAR   90 (365)
Q Consensus        80 ~d~G~Y~C~a~   90 (365)
                      +|++.|.|...
T Consensus        88 eDtAvYYCAr~   98 (117)
T d1c5db1          88 EDTAIYFCTRE   98 (117)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEecc
Confidence            99999999643

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.05  E-value=0.0048  Score=42.81  Aligned_cols=71  Identities=10%  Similarity=0.048  Sum_probs=45.0

Q ss_pred             EEEEecCCcEEEEEEeCCCC--CcceEEEEeCCC--c-----CCCCCC----------ceeE-e-cCCeEEEEEEccCCC
Q psy3823          21 IYGALRNEQVLVSCTVDANP--QAQYFTWAFNNS--G-----TAPRPL----------TSYS-I-QDGSTSVARYTPTSE   79 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~--~-----~l~~~~----------~~~~-~-~~~~~~~l~i~~~~~   79 (365)
                      .-.+.+|++++|.|++.+..  .. .+.|+|...  .     .+....          +... . .....-.|.|.+++.
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y-~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTY-DMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCE-EEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCccCC-ceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence            34578999999999954432  34 789988532  1     011100          1111 1 223445799999999


Q ss_pred             CCCeEEEEEEEeC
Q psy3823          80 LEYGTLLCWARNE   92 (365)
Q Consensus        80 ~d~G~Y~C~a~~~   92 (365)
                      +|++.|.|.....
T Consensus        87 eDtA~YYCAr~~~   99 (119)
T d1kxvc_          87 DDTAMYYCKPSLR   99 (119)
T ss_dssp             GGCEEEEEEEEES
T ss_pred             CCcceEeeeeccc
Confidence            9999999976543

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.002  Score=44.03  Aligned_cols=69  Identities=20%  Similarity=0.330  Sum_probs=44.2

Q ss_pred             ecCCcEEEEEEEEec-CCC-CeeEEEeCCeEEeeCCCC------ceEEeeceEEEeeecCCCCeEEEEEEEcCCCCC
Q psy3823         133 NEGVDIYFDCHIQAN-PPY-KKLIWTHNGITISNNASA------GRIITNQTLVLQSVTRHSGGLYACSAINSQGEG  201 (365)
Q Consensus       133 ~~g~~v~l~C~~~~~-p~~-~~i~W~~~~~~l~~~~~~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~  201 (365)
                      ..++.++|.|.+.++ |+. ..+.|.+|+..+......      +.....+.|.|..........|+|++.+.....
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~~   93 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV   93 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCCC
Confidence            356889999999984 553 446788877655421111      112223456677666666778999999875543

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.05  E-value=0.0013  Score=45.87  Aligned_cols=69  Identities=9%  Similarity=0.087  Sum_probs=45.6

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCC-------CC----------CCceeEe--eCCCEEEEEEcCCCcccCe
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTA-------PR----------PLTSYSI--QDGSTSVARYTPTSELEYG  295 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~-------~~----------~~~~~~~--~~~~~s~l~i~~v~~~d~G  295 (365)
                      +.+|+.+.|+|.+.|+.... .+.|++......       ..          ..+..+.  ...+...|.|++++.+|+.
T Consensus        11 vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDtA   90 (119)
T d1kxvc_          11 VPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTA   90 (119)
T ss_dssp             ECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCcc
Confidence            78999999999998865443 588887421100       00          0112222  2334567999999999999


Q ss_pred             EEEEEEEcC
Q psy3823         296 TLLCWARNE  304 (365)
Q Consensus       296 ~Y~C~a~n~  304 (365)
                      .|.|.....
T Consensus        91 ~YYCAr~~~   99 (119)
T d1kxvc_          91 MYYCKPSLR   99 (119)
T ss_dssp             EEEEEEEES
T ss_pred             eEeeeeccc
Confidence            999976543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.0018  Score=45.66  Aligned_cols=69  Identities=7%  Similarity=-0.047  Sum_probs=41.5

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEE-eCCCCCCC---------------CCCceeE--eeCCCEEEEEEcCCCcccCeE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWA-FNNSDTAP---------------RPLTSYS--IQDGSTSVARYTPTSELEYGT  296 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~-~~~~~~~~---------------~~~~~~~--~~~~~~s~l~i~~v~~~d~G~  296 (365)
                      +..|+.++|.|...+..... .+.|+ +.......               ...+...  ........|.|.+++.+|+|.
T Consensus        12 v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav   91 (118)
T d1yjdc1          12 VAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDI   91 (118)
T ss_dssp             ECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCEE
T ss_pred             EeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCeE
Confidence            56789999999986543332 23344 42211100               0001111  233455679999999999999


Q ss_pred             EEEEEEcC
Q psy3823         297 LLCWARNE  304 (365)
Q Consensus       297 Y~C~a~n~  304 (365)
                      |.|.+...
T Consensus        92 YyCa~~~~   99 (118)
T d1yjdc1          92 YFCKIEVM   99 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEecc
Confidence            99987653

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.03  E-value=0.00054  Score=45.24  Aligned_cols=63  Identities=8%  Similarity=0.111  Sum_probs=43.8

Q ss_pred             CcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEEEEeCC
Q psy3823          28 EQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        28 ~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      +.++|.|. .+..|....++|.+++.. ...........++..+.+.+....  ....|+|.+.+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~-~~~~~~~~~~~~gtys~~s~~~~~--~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKI-TEFDPAIVISPSGKYNAVKLGKYE--DSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEE-EECCCEEEECTTSSEEEEEEEEET--TTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEE-ccCcEEeeeccCCcEEEEEEEecC--CCCEEEEEEEECC
Confidence            56789999 556677779999999877 655444444456665555555544  4457999999864

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.02  E-value=0.0011  Score=46.16  Aligned_cols=66  Identities=9%  Similarity=0.182  Sum_probs=44.2

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCC-----------------CCCceeEe--eCCCEEEEEEcCCCcccCe
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAP-----------------RPLTSYSI--QDGSTSVARYTPTSELEYG  295 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~-----------------~~~~~~~~--~~~~~s~l~i~~v~~~d~G  295 (365)
                      +.+|+.+.|+|.+.|+.... .+.|++.......                 ...+..+.  ...+...|.|++++.+|.+
T Consensus        12 vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDtA   91 (120)
T d1dn0b1          12 LKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTA   91 (120)
T ss_dssp             ECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccccc
Confidence            78999999999999865443 5888874211100                 01122222  2344567999999999999


Q ss_pred             EEEEEE
Q psy3823         296 TLLCWA  301 (365)
Q Consensus       296 ~Y~C~a  301 (365)
                      .|.|-.
T Consensus        92 ~YYCAr   97 (120)
T d1dn0b1          92 VYYCAR   97 (120)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999943

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00053  Score=44.13  Aligned_cols=62  Identities=19%  Similarity=0.430  Sum_probs=44.4

Q ss_pred             eecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCc-eEEeeceEEEeeecC-CCCeEEEEEEEc
Q psy3823         132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAG-RIITNQTLVLQSVTR-HSGGLYACSAIN  196 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~-~~~~~~~l~i~~~~~-~d~G~Y~C~~~~  196 (365)
                      -..|.+|+|+|.-  .+... |.|-+++..+....... .......|.+.+..+ +++|.|.|.+..
T Consensus         7 sISGTtV~LTCP~--~~~~~-i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           7 SISGTTVILTCPQ--YPGSE-ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEETTEEEEECSS--CTTSC-EEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EEeCCEEEEECCC--CCCCc-eeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCC
Confidence            3579999999952  23344 99999999887643322 333455788888766 799999998753

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.00  E-value=0.0033  Score=43.46  Aligned_cols=71  Identities=14%  Similarity=0.136  Sum_probs=45.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCC--cC-----CC-CCC----------cee--EecCCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNS--GT-----AP-RPL----------TSY--SIQDGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~--~~-----l~-~~~----------~~~--~~~~~~~~~l~i~~   76 (365)
                      .....+..|++++|.|++.+..  .. .+.|+|...  .+     +. ...          +..  .....+.-.|.|.+
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y-~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~s   84 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSY-LFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSS   84 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCC-EEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEEccccCCCC-cCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccc
Confidence            3445678999999999965543  34 889988532  10     11 110          111  11233445799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy3823          77 TSELEYGTLLCWAR   90 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~   90 (365)
                      ++.+|++.|.|...
T Consensus        85 L~~eDtAvYYCAr~   98 (117)
T d1um5h1          85 LTSEDSAVYYCARS   98 (117)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999643

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.99  E-value=0.0013  Score=45.58  Aligned_cols=70  Identities=11%  Similarity=0.147  Sum_probs=45.9

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCCC------CC----------CCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDTA------PR----------PLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~~------~~----------~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.... .+.|++..  +...      ..          ..+..+  ....+...|.|++++.+|+
T Consensus        12 ~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eDt   91 (117)
T d1iqdb1          12 KKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDDT   91 (117)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCcc
Confidence            78899999999998864333 47888732  1110      00          111112  2234456799999999999


Q ss_pred             eEEEEEEEcCC
Q psy3823         295 GTLLCWARNEQ  305 (365)
Q Consensus       295 G~Y~C~a~n~~  305 (365)
                      +.|.|......
T Consensus        92 AvYYCA~~~~~  102 (117)
T d1iqdb1          92 AVYYCAVPDPD  102 (117)
T ss_dssp             EEEEEEECSSS
T ss_pred             eEEEEeEcCCC
Confidence            99999876543

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00019  Score=49.42  Aligned_cols=67  Identities=13%  Similarity=0.166  Sum_probs=39.6

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCC---eEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDG---STSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      .++.++|.|. .+..|....|+|.+++.. ...........++   ..+.|.|....+. .+.|+|.+.+...
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~-~~~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~   89 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLS-SGVHTFPAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPAS   89 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBC-TTEEECCCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGG
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCcc-CCeEecccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCC
Confidence            4789999999 555677679999766543 2211111122333   2345666666653 5689999998653

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.98  E-value=0.00013  Score=52.48  Aligned_cols=71  Identities=13%  Similarity=0.158  Sum_probs=43.8

Q ss_pred             eecCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCC---cee----EeeCCC---EEEEEEcCCCcccCe-EEEEEEEc
Q psy3823         236 ALRNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPL---TSY----SIQDGS---TSVARYTPTSELEYG-TLLCWARN  303 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~---~~~----~~~~~~---~s~l~i~~v~~~d~G-~Y~C~a~n  303 (365)
                      ...+..++|.|.+.++ |....|.|+++|........   ...    ...+++   .+.|.|....+.+.| .|+|.|.+
T Consensus        17 ~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H   96 (127)
T d1ogae2          17 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQF   96 (127)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEE
T ss_pred             hccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEE
Confidence            4456789999999885 54447999998864322110   000    122343   356766655555555 69999988


Q ss_pred             CCc
Q psy3823         304 EQG  306 (365)
Q Consensus       304 ~~g  306 (365)
                      ...
T Consensus        97 ~~l   99 (127)
T d1ogae2          97 YGL   99 (127)
T ss_dssp             CCB
T ss_pred             CCC
Confidence            644

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.97  E-value=0.00045  Score=48.38  Aligned_cols=69  Identities=9%  Similarity=0.111  Sum_probs=44.1

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC---------------C-CceeE-eeCCCEEEEEEcCCCcccCeEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR---------------P-LTSYS-IQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~---------------~-~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      +.+|+.++|.|.... .... +.|++........               . ..... ..+.....|.|.+++.+|+|.|.
T Consensus        10 ~~~G~svtL~C~~~~-~~~~-~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   87 (112)
T d2cdeb1          10 IGTGKKITLECSQTM-GHDK-MYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYL   87 (112)
T ss_dssp             EETTCCBCCEEEETT-CCSE-EEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEEE
T ss_pred             ECCCCCEEEEEEEeC-Cccc-EEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccEE
Confidence            789999999998642 2344 9999743211100               0 00000 12233456999999999999999


Q ss_pred             EEEEcCCc
Q psy3823         299 CWARNEQG  306 (365)
Q Consensus       299 C~a~n~~g  306 (365)
                      |.+....+
T Consensus        88 CA~~~~~~   95 (112)
T d2cdeb1          88 CASSENIG   95 (112)
T ss_dssp             EEEECSSS
T ss_pred             EEEecCCC
Confidence            98876544

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.97  E-value=0.0057  Score=42.52  Aligned_cols=72  Identities=10%  Similarity=0.065  Sum_probs=45.4

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCc-ceEEEEeCCC--c-----CCC--CCC---------ce-eE-ecCCeEEEEEEccCC
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNS--G-----TAP--RPL---------TS-YS-IQDGSTSVARYTPTS   78 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~~--~-----~l~--~~~---------~~-~~-~~~~~~~~l~i~~~~   78 (365)
                      ..-.++.|++++|.|++.+..-. ..+.|+|...  .     .+.  ...         +. .. ....+.-.|.|.+++
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~   88 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR   88 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC
Confidence            34557899999999996654322 2788988432  1     011  111         11 11 122344469999999


Q ss_pred             CCCCeEEEEEEEe
Q psy3823          79 ELEYGTLLCWARN   91 (365)
Q Consensus        79 ~~d~G~Y~C~a~~   91 (365)
                      .+|++.|.|....
T Consensus        89 ~eDtA~YYCAr~~  101 (122)
T d1vgeh1          89 PEDTAVYYCARDP  101 (122)
T ss_dssp             GGGCEEEEEEEET
T ss_pred             CCcceEEEEeecC
Confidence            9999999997653

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.96  E-value=0.0049  Score=42.94  Aligned_cols=70  Identities=9%  Similarity=0.100  Sum_probs=44.2

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCC--Cc-----CCC-CCC----------cee-E-ecCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNN--SG-----TAP-RPL----------TSY-S-IQDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~--~~-----~l~-~~~----------~~~-~-~~~~~~~~l~i~~~   77 (365)
                      ....++.|++++|.|++.+..  .. .+.|+|..  +.     .+. ...          +.. . ....+.-.|+|.++
T Consensus         8 g~~~vkpG~sl~LsC~~SG~s~~~~-~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l   86 (120)
T d1pg7x1           8 GPELVKPGASVKISCKASGYSFTGH-LLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRL   86 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGS-EEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCcEECCCCCEEEEEEEccccCCCC-CcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccccc
Confidence            344578999999999954432  33 78898842  21     001 110          111 1 12234456999999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        87 ~~eDtA~YYCAr~   99 (120)
T d1pg7x1          87 TSNDSAVYYCARE   99 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEeeec
Confidence            9999999999854

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.95  E-value=0.0031  Score=43.95  Aligned_cols=68  Identities=10%  Similarity=0.077  Sum_probs=42.9

Q ss_pred             EEEEecCCcEEEEEEeCCC--CCcceEEEEeC--CCcCC------C-CC----------CceeE--ecCCeEEEEEEccC
Q psy3823          21 IYGALRNEQVLVSCTVDAN--PQAQYFTWAFN--NSGTA------P-RP----------LTSYS--IQDGSTSVARYTPT   77 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~--~~~~l------~-~~----------~~~~~--~~~~~~~~l~i~~~   77 (365)
                      ...+++|++++|.|++.+.  ... .+.|+|.  ++. +      . ..          .+...  ....+.-.|.|.++
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y-~~~WyRQ~PGkg-le~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L   86 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTY-PIEWMKQNHGKS-LEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRL   86 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSS-CEEEEEEETTSC-CEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEE
T ss_pred             CceECCCCCEEEEEEEeccCCCCC-CcceeeecCCCc-ceEeeccCCcccccchhhhhcccceeecccccceeeeeeccc
Confidence            3457889999999994432  233 7889874  221 1      0 00          01111  12234457999999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        87 ~~eDsAvYYCA~~   99 (119)
T d1qnzh_          87 TSDDSAVYYCAIH   99 (119)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CccceeEEEEEEe
Confidence            9999999999644

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.95  E-value=0.00079  Score=47.06  Aligned_cols=66  Identities=11%  Similarity=0.177  Sum_probs=42.2

Q ss_pred             eecCceEEEEEEEeeeCCCceeEEEeCCCCCCCC----------------CCceeE-eeCCCEEEEEEcCCCcccCeEEE
Q psy3823         236 ALRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPR----------------PLTSYS-IQDGSTSVARYTPTSELEYGTLL  298 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~----------------~~~~~~-~~~~~~s~l~i~~v~~~d~G~Y~  298 (365)
                      +.+|++++|.|.... .... +.|++......+.                ...... ..+.....|.|.+++.+|+|.|.
T Consensus        11 ~~~G~svtl~C~~s~-~~~~-~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavYy   88 (112)
T d2bnub1          11 LKTGQSMTLQCAQDM-NHEY-MSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYF   88 (112)
T ss_dssp             EETTCCEEEEEEESS-CCSE-EEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEEEC-Cccc-eEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEEE
Confidence            789999999998753 2344 9999732111000                000000 12233456999999999999999


Q ss_pred             EEEEc
Q psy3823         299 CWARN  303 (365)
Q Consensus       299 C~a~n  303 (365)
                      |.+..
T Consensus        89 CA~~~   93 (112)
T d2bnub1          89 CASSY   93 (112)
T ss_dssp             EEEEC
T ss_pred             EeecC
Confidence            98764

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.93  E-value=0.0007  Score=46.51  Aligned_cols=68  Identities=10%  Similarity=0.221  Sum_probs=42.3

Q ss_pred             eecCCcEEEEEEEEec-CCC--CeeEEEeCCeEEeeCCC-------CceEEeeceEEEeeecCCCCeEEEEEEEcCCC
Q psy3823         132 LNEGVDIYFDCHIQAN-PPY--KKLIWTHNGITISNNAS-------AGRIITNQTLVLQSVTRHSGGLYACSAINSQG  199 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~~-p~~--~~i~W~~~~~~l~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  199 (365)
                      +..+..++|.|.+.+. |..  .++.|.+||..+.....       .+.....+.|.|..-.....-.|+|.+.+...
T Consensus        13 ~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l   90 (103)
T d1i1ca1          13 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF   90 (103)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred             hccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCC
Confidence            3456789999999974 432  45889999887653211       11112233455554444455679999998653

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.90  E-value=0.0046  Score=42.78  Aligned_cols=72  Identities=8%  Similarity=0.072  Sum_probs=44.8

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCc-ceEEEEeCC--Cc-----CCC-CC-C---------cee-Ee-cCCeEEEEEEccCC
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQA-QYFTWAFNN--SG-----TAP-RP-L---------TSY-SI-QDGSTSVARYTPTS   78 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~--~~-----~l~-~~-~---------~~~-~~-~~~~~~~l~i~~~~   78 (365)
                      ..-.++.|+++.|.|++.+..-. ..+.|+|..  +.     .+. .. .         +.. .. ...+.-.|.|.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (118)
T d2fbjh1           8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccC
Confidence            34557899999999995544322 178898742  21     011 11 1         111 12 22344569999999


Q ss_pred             CCCCeEEEEEEEe
Q psy3823          79 ELEYGTLLCWARN   91 (365)
Q Consensus        79 ~~d~G~Y~C~a~~   91 (365)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (118)
T d2fbjh1          88 SEDTALYYCARLH  100 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCcceEEEeeEec
Confidence            9999999997654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.89  E-value=0.0055  Score=42.50  Aligned_cols=70  Identities=13%  Similarity=0.155  Sum_probs=44.3

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCC--c-----CCC-CCC----------cee-E-ecCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNS--G-----TAP-RPL----------TSY-S-IQDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~--~-----~l~-~~~----------~~~-~-~~~~~~~~l~i~~~   77 (365)
                      ..-.++.|+++.|.|++.+..  .. .+.|+|-..  .     .+. ...          +.. . ....+.-.|.|.++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL   86 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDF-YMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSL   86 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCC-ceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeecc
Confidence            344578999999999955433  33 788987421  1     010 110          111 1 12344557999999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (119)
T d1rz7h1          87 RSEDTAVYYCAAD   99 (119)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccceEEEEeec
Confidence            9999999999654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.89  E-value=0.0077  Score=41.84  Aligned_cols=69  Identities=10%  Similarity=0.103  Sum_probs=43.1

Q ss_pred             EEEEecCCcEEEEEEeCCCC----CcceEEEEeCC--CcC-----C-CCCC---------ce-eEe-cCCeEEEEEEccC
Q psy3823          21 IYGALRNEQVLVSCTVDANP----QAQYFTWAFNN--SGT-----A-PRPL---------TS-YSI-QDGSTSVARYTPT   77 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p----~~~~v~W~~~~--~~~-----l-~~~~---------~~-~~~-~~~~~~~l~i~~~   77 (365)
                      ...++.|++++|.|++.+..    .. .+.|+|..  +.+     + ....         +. ... ...+.-.|.|.++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y-~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL   87 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNY-CWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISV   87 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTE-EEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSC
T ss_pred             CceECCCCCEEEEEEEcccccccCcc-ccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeee
Confidence            34578999999999954432    23 67898853  210     1 1111         00 111 2234457999999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        88 ~~eDtAvYYCAr~  100 (120)
T d1ai1h1          88 TNEDTAMYYCSRE  100 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eccceeEEEEEec
Confidence            9999999999744

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.87  E-value=0.0016  Score=45.57  Aligned_cols=68  Identities=12%  Similarity=0.115  Sum_probs=42.4

Q ss_pred             EEEecCCcEEEEEEeCCC----CCcceEEEEeCCCcC-CC-------C---------CCceeEe--cCCeEEEEEEccCC
Q psy3823          22 YGALRNEQVLVSCTVDAN----PQAQYFTWAFNNSGT-AP-------R---------PLTSYSI--QDGSTSVARYTPTS   78 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~----p~~~~v~W~~~~~~~-l~-------~---------~~~~~~~--~~~~~~~l~i~~~~   78 (365)
                      ..+++|++++|.|++.+.    ... .+.|+|..... +.       .         ..+....  .......|.|.+++
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~-~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGE-GVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSC-EEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             eeECCCCCEEEEEEEcccCccCCCC-eEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            446889999999984332    234 68899842210 10       0         0111111  22344579999999


Q ss_pred             CCCCeEEEEEEE
Q psy3823          79 ELEYGTLLCWAR   90 (365)
Q Consensus        79 ~~d~G~Y~C~a~   90 (365)
                      .+|++.|.|...
T Consensus        89 ~eDsAvYyCAr~  100 (120)
T d2agjh1          89 PVDTATYYCART  100 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             eccceEEeeEec
Confidence            999999999743

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.0023  Score=44.17  Aligned_cols=67  Identities=10%  Similarity=0.139  Sum_probs=44.5

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCCC---------------CCCCceeE--eeCCCEEEEEEcCCCcccCe
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDTA---------------PRPLTSYS--IQDGSTSVARYTPTSELEYG  295 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~~---------------~~~~~~~~--~~~~~~s~l~i~~v~~~d~G  295 (365)
                      +.+|+.+.|+|.+.|..... .+.|.+..  +...               ....+..+  ....+...|.+++++.+|.+
T Consensus        12 vkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDtA   91 (117)
T d1c5db1          12 VQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTA   91 (117)
T ss_dssp             ECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcce
Confidence            78999999999999865433 58888642  1110               00112222  22344567999999999999


Q ss_pred             EEEEEEE
Q psy3823         296 TLLCWAR  302 (365)
Q Consensus       296 ~Y~C~a~  302 (365)
                      .|.|-..
T Consensus        92 vYYCAr~   98 (117)
T d1c5db1          92 IYFCTRE   98 (117)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecc
Confidence            9999654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.86  E-value=0.0029  Score=44.35  Aligned_cols=69  Identities=13%  Similarity=0.184  Sum_probs=45.8

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCC--------CCC----------CceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTA--------PRP----------LTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~--------~~~----------~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.... .+.|.+......        ...          .+..+  ....+...|.+++++.+|+
T Consensus        11 vkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eDt   90 (124)
T d1zvya1          11 VQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDT   90 (124)
T ss_dssp             CCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCcc
Confidence            78999999999999865443 588987421110        001          11111  2223456799999999999


Q ss_pred             eEEEEEEEcC
Q psy3823         295 GTLLCWARNE  304 (365)
Q Consensus       295 G~Y~C~a~n~  304 (365)
                      +.|.|.....
T Consensus        91 AvYYCAr~~~  100 (124)
T d1zvya1          91 AIYTCGATRK  100 (124)
T ss_dssp             EEEEEEECSS
T ss_pred             eEEEEeeccc
Confidence            9999987543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.85  E-value=0.0018  Score=44.77  Aligned_cols=68  Identities=9%  Similarity=0.094  Sum_probs=45.0

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCC---------C--------CCceeE--eeCCCEEEEEEcCCCcccCe
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAP---------R--------PLTSYS--IQDGSTSVARYTPTSELEYG  295 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~---------~--------~~~~~~--~~~~~~s~l~i~~v~~~d~G  295 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|.+.......         .        ..+..+  ....+...|.|++++.+|.+
T Consensus        12 vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDTA   91 (116)
T d1a2yb_          12 VAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTA   91 (116)
T ss_dssp             ECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             ECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccce
Confidence            78999999999999865443 5788764211100         0        011112  22344567999999999999


Q ss_pred             EEEEEEEc
Q psy3823         296 TLLCWARN  303 (365)
Q Consensus       296 ~Y~C~a~n  303 (365)
                      .|.|-...
T Consensus        92 vYYCAr~~   99 (116)
T d1a2yb_          92 RYYCARER   99 (116)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEeC
Confidence            99997643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.85  E-value=0.0032  Score=43.40  Aligned_cols=68  Identities=10%  Similarity=0.182  Sum_probs=44.7

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCC--------CCC----------CCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDT--------APR----------PLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~--------~~~----------~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+++.|+|.+.|+.-.. .+.|.+.....        ...          ..+..+  ....+...|.+++++.+|.
T Consensus        12 vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eDT   91 (117)
T d1jpth1          12 VQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDT   91 (117)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCCc
Confidence            78999999999999865433 58887642110        000          111112  2234556799999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (117)
T d1jpth1          92 AVYYCARDT  100 (117)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEeecC
Confidence            999996543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.84  E-value=0.0026  Score=43.30  Aligned_cols=69  Identities=12%  Similarity=0.078  Sum_probs=43.6

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc-------CCC-C---CC---------cee-Ee-cCCeEEEEEEc
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG-------TAP-R---PL---------TSY-SI-QDGSTSVARYT   75 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~-------~l~-~---~~---------~~~-~~-~~~~~~~l~i~   75 (365)
                      ..-.+++|++++|+|++.+..  .. .+.|+|....       .+. .   ..         +.. .. ...+.-.|.|.
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~-~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~   86 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTD-AMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMN   86 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCeECCCCCeEEEEEECCCccccc-ccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEeccc
Confidence            345678999999999954432  23 7888874221       000 0   00         111 11 22344579999


Q ss_pred             cCCCCCCeEEEEEE
Q psy3823          76 PTSELEYGTLLCWA   89 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a   89 (365)
                      +++.+|++.|.|.-
T Consensus        87 sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          87 NLKTEDTGIYYCVR  100 (109)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             CCCHhHCEEEEEEE
Confidence            99999999999974

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.82  E-value=0.005  Score=42.47  Aligned_cols=69  Identities=12%  Similarity=0.055  Sum_probs=43.7

Q ss_pred             EEEEecCCcEEEEEEeCCC--CCcceEEEEeCCC--cC-----CC-CCC---------ce-eE-ecCCeEEEEEEccCCC
Q psy3823          21 IYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNS--GT-----AP-RPL---------TS-YS-IQDGSTSVARYTPTSE   79 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~--~~-----l~-~~~---------~~-~~-~~~~~~~~l~i~~~~~   79 (365)
                      ...++.|++++|.|++.+.  ... .+.|+|...  .+     +. ...         +. .. ....+.-.|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~   87 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGY-GVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT   87 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSS-EEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcccccCCC-CCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee
Confidence            3457889999999995443  234 788988532  10     01 111         00 11 1233445799999999


Q ss_pred             CCCeEEEEEEE
Q psy3823          80 LEYGTLLCWAR   90 (365)
Q Consensus        80 ~d~G~Y~C~a~   90 (365)
                      +|++.|.|.-.
T Consensus        88 eDTAvYYCAr~   98 (116)
T d1a2yb_          88 DDTARYYCARE   98 (116)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEEEe
Confidence            99999999754

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.82  E-value=0.0018  Score=45.23  Aligned_cols=67  Identities=10%  Similarity=0.109  Sum_probs=43.4

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeC--CCCCC----------------CCCCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFN--NSDTA----------------PRPLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~--~~~~~----------------~~~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+++.|.|.+.|..-.. .+.|++.  |+...                ....+..+  ....+...|.|++++.+|+
T Consensus        12 ~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eDs   91 (119)
T d1qnzh_          12 VKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDDS   91 (119)
T ss_dssp             ECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGGC
T ss_pred             ECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccce
Confidence            78899999999998754222 4788763  21110                00112222  2234456799999999999


Q ss_pred             eEEEEEEE
Q psy3823         295 GTLLCWAR  302 (365)
Q Consensus       295 G~Y~C~a~  302 (365)
                      +.|.|-..
T Consensus        92 AvYYCA~~   99 (119)
T d1qnzh_          92 AVYYCAIH   99 (119)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEe
Confidence            99999654

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.82  E-value=0.0032  Score=43.35  Aligned_cols=73  Identities=14%  Similarity=0.191  Sum_probs=45.8

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCc-ceEEEEeC--CCcC-----C-CCCC----------ceeE--ecCCeEEEEEEcc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQA-QYFTWAFN--NSGT-----A-PRPL----------TSYS--IQDGSTSVARYTP   76 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~--~~~~-----l-~~~~----------~~~~--~~~~~~~~l~i~~   76 (365)
                      |.....++.|+++.|.|++.+..-. ..+.|+|.  ++.+     + ....          +...  ....+.-.|.+.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s   85 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence            4455678999999999995543322 27889873  2210     1 1111          1111  1233455799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy3823          77 TSELEYGTLLCWAR   90 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~   90 (365)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (116)
T d1mjuh1          86 LTSDDSAVYYCANK   99 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCceEEEEccc
Confidence            99999999999643

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.81  E-value=0.0027  Score=44.26  Aligned_cols=68  Identities=9%  Similarity=0.142  Sum_probs=44.6

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCC--------C----------CCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAP--------R----------PLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~--------~----------~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|..... .+.|++.......        .          ..+..+  ....+...|.|++++.+|.
T Consensus        12 vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eDt   91 (120)
T d1pg7x1          12 VKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDS   91 (120)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCcc
Confidence            78899999999998764333 5888864211100        0          011112  2234456699999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      +.|.|....
T Consensus        92 A~YYCAr~~  100 (120)
T d1pg7x1          92 AVYYCARED  100 (120)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEeeecC
Confidence            999998653

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.81  E-value=0.0019  Score=44.72  Aligned_cols=67  Identities=12%  Similarity=0.158  Sum_probs=44.6

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCC--------CC----------CceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAP--------RP----------LTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~--------~~----------~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|++.......        ..          .+..+  ....+...|.|++++.+|.
T Consensus        11 ~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eDt   90 (117)
T d1um5h1          11 VKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSEDS   90 (117)
T ss_dssp             ECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCcc
Confidence            78999999999998865443 5888764211000        00          11112  2234556799999999999


Q ss_pred             eEEEEEEE
Q psy3823         295 GTLLCWAR  302 (365)
Q Consensus       295 G~Y~C~a~  302 (365)
                      +.|.|...
T Consensus        91 AvYYCAr~   98 (117)
T d1um5h1          91 AVYYCARS   98 (117)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99999654

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.80  E-value=0.0072  Score=42.10  Aligned_cols=70  Identities=14%  Similarity=0.167  Sum_probs=44.2

Q ss_pred             ceEEEEecCCcEEEEEEeCCC--CCcceEEEEeCC--CcCC------C-CCC----------ceeE-e-cCCeEEEEEEc
Q psy3823          19 QRIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNN--SGTA------P-RPL----------TSYS-I-QDGSTSVARYT   75 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~--~~~l------~-~~~----------~~~~-~-~~~~~~~l~i~   75 (365)
                      .....++.|++++|.|++.+.  ... .+.|+|..  +. +      . ...          +... . ...+.-.|.|.
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~~s~~-~~~W~RQ~PGkg-le~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~   84 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFNIKDT-YMHWVKQRPEQG-LEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLT   84 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGS-EEEEEEECTTCC-CEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEecCCCCCC-CcceeeECCCCc-cccccccCCcCCccccchhhccceEEEeecCCceeeeccc
Confidence            344557899999999995433  233 78898842  21 1      0 110          1111 1 22334469999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy3823          76 PTSELEYGTLLCWAR   90 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~   90 (365)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          85 SLTSEDTAVYYCAPF   99 (121)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcCcceEEEeEee
Confidence            999999999999754

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.79  E-value=0.0095  Score=41.95  Aligned_cols=85  Identities=9%  Similarity=0.003  Sum_probs=51.3

Q ss_pred             eEEEEecCCcEEEEEEeCCC--CCcceEEEEeCC--CcC-----CC-CC-C---------ceeE-e-cCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNN--SGT-----AP-RP-L---------TSYS-I-QDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~--~~~-----l~-~~-~---------~~~~-~-~~~~~~~l~i~~~   77 (365)
                      ..-.++.|++++|.|++.+.  ... .+.|+|..  +.+     +. .. .         +... . .....-.|.|.++
T Consensus         8 G~~lvkPG~Sl~LsC~~SG~s~~~y-~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L   86 (135)
T d1ieha_           8 GGGLVQPGGSLRVSCAASGFTFSSY-HMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSL   86 (135)
T ss_dssp             CCCEECTTCEEEEEEEEESSCTTTS-CEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCC-ceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeee
Confidence            34457899999999995443  234 78898742  210     11 11 0         1111 1 2234457999999


Q ss_pred             CCCCCeEEEEEEEeCCCCCc--ccEEEEEE
Q psy3823          78 SELEYGTLLCWARNEQGNQR--TPCTFHVV  105 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~~~~~~~--~~~~l~V~  105 (365)
                      +.+|++.|.|........+.  .-..|+|.
T Consensus        87 ~~eDTAvYYCAr~~~~~~d~WGqGT~VTVs  116 (135)
T d1ieha_          87 KSEDTAVYYCAKYSGGALDAWGQGTQVTVS  116 (135)
T ss_dssp             CSSSCEEEEEEEBSSSSBCCCSCCEEEEEC
T ss_pred             CcccceeeEEEEecCCccceeCCCEEEEEE
Confidence            99999999997544333232  55677773

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.79  E-value=0.0015  Score=44.53  Aligned_cols=68  Identities=9%  Similarity=0.061  Sum_probs=44.6

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCC--------------------CCCceeEe--eCCCEEEEEEcCCCcc
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAP--------------------RPLTSYSI--QDGSTSVARYTPTSEL  292 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~--------------------~~~~~~~~--~~~~~s~l~i~~v~~~  292 (365)
                      +.+|+++.|+|.+.|+.... .+.|.+.......                    ...+..+.  ...++..|.|++++.+
T Consensus        12 vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~e   91 (109)
T d2ck0h1          12 VQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKTE   91 (109)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCHh
Confidence            78999999999998864332 4888763211000                    01122222  2345567999999999


Q ss_pred             cCeEEEEEEEc
Q psy3823         293 EYGTLLCWARN  303 (365)
Q Consensus       293 d~G~Y~C~a~n  303 (365)
                      |.+.|.|...+
T Consensus        92 DTAvYYCAr~~  102 (109)
T d2ck0h1          92 DTGIYYCVRGR  102 (109)
T ss_dssp             GCEEEEEEEEC
T ss_pred             HCEEEEEEEcC
Confidence            99999997543

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.78  E-value=0.00069  Score=44.68  Aligned_cols=64  Identities=11%  Similarity=0.122  Sum_probs=42.0

Q ss_pred             ceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCcccCeEEEEEEEcCCc
Q psy3823         240 EQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCWARNEQG  306 (365)
Q Consensus       240 ~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d~G~Y~C~a~n~~g  306 (365)
                      ..++|.|.+.++ |....+.|..+|.... .........++..+.+.+..+  .....|+|.|.+...
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~-~~~~~~~~~~gtys~~s~~~~--~~~~~yTC~V~H~~~   78 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITE-FDPAIVISPSGKYNAVKLGKY--EDSNSVTCSVQHDNK   78 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEE-CCCEEEECTTSSEEEEEEEEE--TTTTTCEEEEEETTE
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEcc-CcEEeeeccCCcEEEEEEEec--CCCCEEEEEEEECCc
Confidence            457899999986 5444799999876432 222233455677766666554  345579999988643

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.78  E-value=0.0027  Score=44.83  Aligned_cols=70  Identities=10%  Similarity=0.053  Sum_probs=44.3

Q ss_pred             EEEEecCCcEEEEEEeCCCC--CcceEEEEeCCCc----CC--------C-CC----------CceeE--ecCCeEEEEE
Q psy3823          21 IYGALRNEQVLVSCTVDANP--QAQYFTWAFNNSG----TA--------P-RP----------LTSYS--IQDGSTSVAR   73 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~~----~l--------~-~~----------~~~~~--~~~~~~~~l~   73 (365)
                      .-.+.+|++++|.|++.+..  .. .+.|+|....    -+        . ..          .+...  ......-.|+
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y-~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~   87 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTY-VIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ   87 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGS-EEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCCCC-ceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEe
Confidence            34568899999999955432  33 8899974211    00        0 00          01111  1223445799


Q ss_pred             EccCCCCCCeEEEEEEEe
Q psy3823          74 YTPTSELEYGTLLCWARN   91 (365)
Q Consensus        74 i~~~~~~d~G~Y~C~a~~   91 (365)
                      |.+++.+|++.|.|....
T Consensus        88 i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             eecccccceeEEEEEEEe
Confidence            999999999999998654

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.77  E-value=0.0025  Score=44.08  Aligned_cols=71  Identities=10%  Similarity=0.067  Sum_probs=44.0

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCc-ceEEEEeCCCc-------CCC-C-CC---------ce-eE-ecCCeEEEEEEccC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNSG-------TAP-R-PL---------TS-YS-IQDGSTSVARYTPT   77 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~~~-------~l~-~-~~---------~~-~~-~~~~~~~~l~i~~~   77 (365)
                      .....++.|+++.|.|++.+..-. ..+.|+|....       .+. . ..         +. .. ......-.|.+.++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL   86 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccc
Confidence            344557899999999995544322 27889884321       011 1 11         00 11 12234457999999


Q ss_pred             CCCCCeEEEEEE
Q psy3823          78 SELEYGTLLCWA   89 (365)
Q Consensus        78 ~~~d~G~Y~C~a   89 (365)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (118)
T d2jelh1          87 TSEDSAIYYCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceeeeEEE
Confidence            999999999953

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.75  E-value=0.0018  Score=44.88  Aligned_cols=68  Identities=12%  Similarity=0.082  Sum_probs=42.7

Q ss_pred             EEEEecCCcEEEEEEeCCC--CCcceEEEEeCC--Cc-----CCC-CC-C---------ceeE-e-cCCeEEEEEEccCC
Q psy3823          21 IYGALRNEQVLVSCTVDAN--PQAQYFTWAFNN--SG-----TAP-RP-L---------TSYS-I-QDGSTSVARYTPTS   78 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~--~~-----~l~-~~-~---------~~~~-~-~~~~~~~l~i~~~~   78 (365)
                      ...++.|++++|.|++.+.  ... .+.|+|-.  +.     .+. .. .         +... . .....-.|.|.+++
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y-~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~   87 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDY-NIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLT   87 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGS-CEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEEccccCCCC-CcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecC
Confidence            3457899999999995443  334 78898742  11     011 11 1         1111 1 22344579999999


Q ss_pred             CCCCeEEEEEE
Q psy3823          79 ELEYGTLLCWA   89 (365)
Q Consensus        79 ~~d~G~Y~C~a   89 (365)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (115)
T d1f3dh1          88 FEDSAVYYCAN   98 (115)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCCcEEEEEec
Confidence            99999999953

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0002  Score=49.21  Aligned_cols=70  Identities=20%  Similarity=0.234  Sum_probs=43.2

Q ss_pred             eecCceEEEEEEEeee--CCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCccc---CeEEEEEEEcCCc
Q psy3823         236 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELE---YGTLLCWARNEQG  306 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~--p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d---~G~Y~C~a~n~~g  306 (365)
                      +..++.++|.|.+.++  |....|.|+.++....... ......++..+......+..++   ...|+|.|.+..-
T Consensus        15 ~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~-~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~~   89 (101)
T d1ow0a1          15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQG-PPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPES   89 (101)
T ss_dssp             HHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEEC-CCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSSC
T ss_pred             HccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeec-ceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCCC
Confidence            4567899999999885  3333699998775332111 1122445554433344454443   6699999998643

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.75  E-value=0.0062  Score=42.41  Aligned_cols=70  Identities=9%  Similarity=0.032  Sum_probs=43.8

Q ss_pred             EEEEecCCcEEEEEEeCCCC--CcceEEEEeCC--Cc-----CCC-CCC----------cee-Ee-cCCeEEEEEEccCC
Q psy3823          21 IYGALRNEQVLVSCTVDANP--QAQYFTWAFNN--SG-----TAP-RPL----------TSY-SI-QDGSTSVARYTPTS   78 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~--~~-----~l~-~~~----------~~~-~~-~~~~~~~l~i~~~~   78 (365)
                      .-.++.|++++|.|++.+..  .. .+.|+|..  +.     .+. ...          +.. .. .....-.|.|.+++
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~   87 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSY-TMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK   87 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEECcccCcCC-ceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeec
Confidence            34578899999999965433  33 78898742  11     011 110          111 11 22344469999999


Q ss_pred             CCCCeEEEEEEEe
Q psy3823          79 ELEYGTLLCWARN   91 (365)
Q Consensus        79 ~~d~G~Y~C~a~~   91 (365)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (123)
T d1mqkh_          88 SEDTAMYYCVRHE  100 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcccceeEEecC
Confidence            9999999997554

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.73  E-value=0.0076  Score=41.92  Aligned_cols=70  Identities=9%  Similarity=0.012  Sum_probs=44.3

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCC--CcC-----CC-C-CC---------cee-Ee-cCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNN--SGT-----AP-R-PL---------TSY-SI-QDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~--~~~-----l~-~-~~---------~~~-~~-~~~~~~~l~i~~~   77 (365)
                      ..-.+..|++++|.|++.+..  .. .+.|+|..  +.+     +. . ..         +.. .. .....-.|.|.++
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~s~y-~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL   86 (121)
T d1ol0a_           8 GGGLVQPGGSLRLSCAASGFTFSSY-AMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSL   86 (121)
T ss_dssp             ECEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEEcCcCCcCC-ceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeec
Confidence            345578999999999954432  33 78898743  220     11 1 11         111 11 2234557999999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (121)
T d1ol0a_          87 RAEDTAVYYCARE   99 (121)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccccceEEEEEEe
Confidence            9999999999754

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.73  E-value=0.0036  Score=44.12  Aligned_cols=69  Identities=9%  Similarity=0.096  Sum_probs=45.5

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCC-----------------------CCceeE--eeCCCEEEEEEcCC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPR-----------------------PLTSYS--IQDGSTSVARYTPT  289 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~-----------------------~~~~~~--~~~~~~s~l~i~~v  289 (365)
                      +.+|+++.|+|.+.|+.-.. .+.|++.......+                       ..+..+  ....+...|.|+++
T Consensus        12 vkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~l   91 (127)
T d1i3ua_          12 VQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNSL   91 (127)
T ss_dssp             CCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeecc
Confidence            78899999999998864333 58888642111000                       011111  22345567999999


Q ss_pred             CcccCeEEEEEEEcC
Q psy3823         290 SELEYGTLLCWARNE  304 (365)
Q Consensus       290 ~~~d~G~Y~C~a~n~  304 (365)
                      +.+|++.|.|.....
T Consensus        92 ~~eDtAvYYCAr~~~  106 (127)
T d1i3ua_          92 KPEDTAVYYCAAKTT  106 (127)
T ss_dssp             CGGGCEEEEEEEESC
T ss_pred             cccceeEEEEEEEee
Confidence            999999999987543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.73  E-value=0.0018  Score=44.54  Aligned_cols=66  Identities=6%  Similarity=0.080  Sum_probs=43.2

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCC--C-------CCC---------CCceeEe--eCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSD--T-------APR---------PLTSYSI--QDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~--~-------~~~---------~~~~~~~--~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|++....  .       ...         ..+..+.  ...+...|.|++++.+|.
T Consensus        12 vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eDt   91 (114)
T d1indh1          12 VKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDT   91 (114)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCcc
Confidence            78999999999998864333 4778763211  0       000         1112222  234456699999999999


Q ss_pred             eEEEEEE
Q psy3823         295 GTLLCWA  301 (365)
Q Consensus       295 G~Y~C~a  301 (365)
                      +.|.|..
T Consensus        92 AvYYCA~   98 (114)
T d1indh1          92 ALYFCAS   98 (114)
T ss_dssp             EEEEEEC
T ss_pred             cEEEECC
Confidence            9999964

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.72  E-value=0.0039  Score=42.82  Aligned_cols=68  Identities=9%  Similarity=0.066  Sum_probs=43.1

Q ss_pred             EEEEecCCcEEEEEEeCCCC--CcceEEEEeCCC--c-----CC-CCCC----------cee-Ee-cCCeEEEEEEccCC
Q psy3823          21 IYGALRNEQVLVSCTVDANP--QAQYFTWAFNNS--G-----TA-PRPL----------TSY-SI-QDGSTSVARYTPTS   78 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~--~-----~l-~~~~----------~~~-~~-~~~~~~~l~i~~~~   78 (365)
                      .-.++.|++++|.|.+.+..  .. .+.|+|-..  .     .+ ....          +.. .. ...+.-.|.|.+++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~-~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~   87 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGE-TMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLR   87 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEECccCccCC-ceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeec
Confidence            34578999999999954432  33 788988432  1     01 1111          111 11 22344569999999


Q ss_pred             CCCCeEEEEEE
Q psy3823          79 ELEYGTLLCWA   89 (365)
Q Consensus        79 ~~d~G~Y~C~a   89 (365)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCA~   98 (114)
T d1indh1          88 SEDTALYFCAS   98 (114)
T ss_dssp             GGGCEEEEEEC
T ss_pred             cCcccEEEECC
Confidence            99999999964

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.71  E-value=0.0032  Score=43.80  Aligned_cols=68  Identities=10%  Similarity=0.077  Sum_probs=44.9

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCC--------CC----------CCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTA--------PR----------PLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~--------~~----------~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.... .+.|.+......        ..          ..+..+  ....+...|.+++++.+|.
T Consensus        13 vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eDt   92 (122)
T d1vgeh1          13 KKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDT   92 (122)
T ss_dssp             ECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCcc
Confidence            78999999999998865433 588876321100        00          111112  2234455699999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      +.|.|....
T Consensus        93 A~YYCAr~~  101 (122)
T d1vgeh1          93 AVYYCARDP  101 (122)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEeecC
Confidence            999997654

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.71  E-value=0.0097  Score=41.18  Aligned_cols=66  Identities=15%  Similarity=0.286  Sum_probs=43.0

Q ss_pred             cceecCCcEEEEEEEEecCCCCeeEEEe--CCeEEe---eC--C---------CCceE---EeeceEEEeeecCCCCeEE
Q psy3823         130 SVLNEGVDIYFDCHIQANPPYKKLIWTH--NGITIS---NN--A---------SAGRI---ITNQTLVLQSVTRHSGGLY  190 (365)
Q Consensus       130 ~~~~~g~~v~l~C~~~~~p~~~~i~W~~--~~~~l~---~~--~---------~~~~~---~~~~~l~i~~~~~~d~G~Y  190 (365)
                      ..+.+|++++|.|......... +.||+  .|..+.   ..  .         ..+..   ..+..|.|.....+|++.|
T Consensus        11 ~~~~~G~~vtL~C~~~~~~~~~-~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa~Y   89 (112)
T d1fo0b_          11 RLVPRGQAVNLRCILKNSQYPW-MSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTL   89 (112)
T ss_dssp             EECCTTCCEEEEEEESCTTCCE-EEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCEEE
T ss_pred             EEECCCCCEEEEEEEecCCCCc-EEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCccE
Confidence            3577899999999887544444 89997  232221   00  0         00111   1235689999999999999


Q ss_pred             EEEEEc
Q psy3823         191 ACSAIN  196 (365)
Q Consensus       191 ~C~~~~  196 (365)
                      .|....
T Consensus        90 ~Ca~~~   95 (112)
T d1fo0b_          90 YCTCSA   95 (112)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            998754

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.71  E-value=0.0031  Score=43.81  Aligned_cols=67  Identities=12%  Similarity=0.140  Sum_probs=43.7

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCC--CCC------CC----------CCceeEee--CCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNS--DTA------PR----------PLTSYSIQ--DGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~--~~~------~~----------~~~~~~~~--~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.... .+.|.+...  ...      ..          ..+..+..  ..+...|.+++++.+|.
T Consensus        12 vkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eDt   91 (121)
T d2p49b1          12 VQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDT   91 (121)
T ss_dssp             EETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccce
Confidence            78999999999998864433 578876421  100      00          01112222  23455699999999999


Q ss_pred             eEEEEEEE
Q psy3823         295 GTLLCWAR  302 (365)
Q Consensus       295 G~Y~C~a~  302 (365)
                      +.|.|...
T Consensus        92 AvYYCAr~   99 (121)
T d2p49b1          92 ATYYCAAG   99 (121)
T ss_dssp             EEEEEEES
T ss_pred             eEEeeecc
Confidence            99999764

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.71  E-value=0.0042  Score=43.32  Aligned_cols=68  Identities=13%  Similarity=0.169  Sum_probs=43.8

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCC--------CC----------CceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAP--------RP----------LTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~--------~~----------~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|.|.+.|+.-.. .+.|++.......        ..          .+..+  ....+...|.|++++.+|+
T Consensus        12 ~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eDt   91 (121)
T d1j05b_          12 VEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDT   91 (121)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCcc
Confidence            78999999999998754322 4888764211100        00          11111  1223455699999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (121)
T d1j05b_          92 AVYYCAPFG  100 (121)
T ss_dssp             EEEEEEEEB
T ss_pred             eEEEeEeec
Confidence            999997653

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.70  E-value=0.015  Score=40.06  Aligned_cols=70  Identities=11%  Similarity=0.156  Sum_probs=43.8

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCC--CcC-----C-CCC-C---------cee--EecCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNN--SGT-----A-PRP-L---------TSY--SIQDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~--~~~-----l-~~~-~---------~~~--~~~~~~~~~l~i~~~   77 (365)
                      ....++.|+++.|.|++.+..  .. .+.|+|..  +.+     + ... .         +..  .....+.-.|.|.++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L   86 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSS-YINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSL   86 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTC-EEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEccccCCCC-CCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccccc
Confidence            345678899999999954422  33 78888742  210     1 110 0         111  112234457999999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (118)
T d1ct8b1          87 TTEDSAIYYCARY   99 (118)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeee
Confidence            9999999999654

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.70  E-value=0.0016  Score=44.33  Aligned_cols=67  Identities=10%  Similarity=0.150  Sum_probs=41.2

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCC---------------CCCCCceeEe--eCCCEEEEEEcCCCcccCe
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDT---------------APRPLTSYSI--QDGSTSVARYTPTSELEYG  295 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~---------------~~~~~~~~~~--~~~~~s~l~i~~v~~~d~G  295 (365)
                      +.+|+.+.|+|.+.|+.... .+.|.+..  +..               .....+..+.  ...+...|.|++++.+|.+
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            67899999999998753222 47887642  111               0001122222  2334556999999999999


Q ss_pred             EEEEEEE
Q psy3823         296 TLLCWAR  302 (365)
Q Consensus       296 ~Y~C~a~  302 (365)
                      .|.|...
T Consensus        85 vYyCA~~   91 (107)
T d1sjva_          85 VYYCYTH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eeeEecc
Confidence            9999653

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.70  E-value=0.0073  Score=41.79  Aligned_cols=70  Identities=13%  Similarity=0.174  Sum_probs=43.7

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCc-ceEEEEeCC--Cc-----CCC--CCC---------ce-eEe-cCCeEEEEEEccCC
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQA-QYFTWAFNN--SG-----TAP--RPL---------TS-YSI-QDGSTSVARYTPTS   78 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~--~~-----~l~--~~~---------~~-~~~-~~~~~~~l~i~~~~   78 (365)
                      ..-.++.|+++.|.|++.+..-. ..+.|+|-.  +.     .+.  ...         +. ... ...+.-.|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            34557899999999996554322 278898742  21     011  111         10 111 22334479999999


Q ss_pred             CCCCeEEEEEE
Q psy3823          79 ELEYGTLLCWA   89 (365)
Q Consensus        79 ~~d~G~Y~C~a   89 (365)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (119)
T d1eapb1          88 SEDSAVYFCKR   98 (119)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEEE
Confidence            99999999964

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.69  E-value=0.0027  Score=43.96  Aligned_cols=70  Identities=7%  Similarity=0.105  Sum_probs=45.6

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCC------CCC----------CCceeEe--eCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDT------APR----------PLTSYSI--QDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~------~~~----------~~~~~~~--~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|.+..  +..      ...          ..+..+.  ...+...|.+++++.+|.
T Consensus        12 vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDt   91 (118)
T d2fbjh1          12 VQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDT   91 (118)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCcc
Confidence            78999999999998865433 47887531  100      000          1112222  233455699999999999


Q ss_pred             eEEEEEEEcCC
Q psy3823         295 GTLLCWARNEQ  305 (365)
Q Consensus       295 G~Y~C~a~n~~  305 (365)
                      +.|.|......
T Consensus        92 AvYYCAr~~~~  102 (118)
T d2fbjh1          92 ALYYCARLHYY  102 (118)
T ss_dssp             EEEEEEEEETT
T ss_pred             eEEEeeEecCC
Confidence            99999876543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.69  E-value=0.011  Score=40.87  Aligned_cols=82  Identities=9%  Similarity=0.056  Sum_probs=0.0

Q ss_pred             EEecCCcEEEEEEeCCCCCcc-eEEEEeCCCc----------------------CCCCCCceeEecCCeEEEEEEccCCC
Q psy3823          23 GALRNEQVLVSCTVDANPQAQ-YFTWAFNNSG----------------------TAPRPLTSYSIQDGSTSVARYTPTSE   79 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~~~-~v~W~~~~~~----------------------~l~~~~~~~~~~~~~~~~l~i~~~~~   79 (365)
                      .++.|++++|.|++.+..... .+.|+|....                      .+...-........+.-.|.|.+++.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~   90 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRA   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccC


Q ss_pred             CCCeEEEEEEEeCCCCCc----ccEEEEE
Q psy3823          80 LEYGTLLCWARNEQGNQR----TPCTFHV  104 (365)
Q Consensus        80 ~d~G~Y~C~a~~~~~~~~----~~~~l~V  104 (365)
                      +|++.|.|.........-    .-..|+|
T Consensus        91 eDtAvYYCA~~~~~~~~fdyWGqGT~VTV  119 (120)
T d1dlfh_          91 EDTGIYYCTGIYYHYPWFAYWGQGTLVTV  119 (120)
T ss_dssp             GGCEEEEEEEEBTTBSSCCCCCCCEEEEE
T ss_pred             CCceEEEeeEecCCCCccceeCCCEEEEE

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00031  Score=48.21  Aligned_cols=70  Identities=17%  Similarity=0.138  Sum_probs=42.8

Q ss_pred             EecCCcEEEEEEeCCC--CCcceEEEEeCCCcCCCCCCceeEecCCe---EEEEEEccCCCCCCeEEEEEEEeCCC
Q psy3823          24 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGTAPRPLTSYSIQDGS---TSVARYTPTSELEYGTLLCWARNEQG   94 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~~~~~   94 (365)
                      +..++.++|.|.+.+.  |....|+|++++.. ...........++.   .+.|.|..-.++....|+|.|.+...
T Consensus        15 ~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~-~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~~   89 (101)
T d1ow0a1          15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGK-SAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPES   89 (101)
T ss_dssp             HHHCSSCCCEEEETTCCSCCCCCCCBSSCSSC-CCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSSC
T ss_pred             HccCCCeEEEEEEeCCCCCcceEEEEEECCce-eeeecceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCCC
Confidence            3458899999997653  55559999988765 32111112223333   23444444444456799999998654

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.68  E-value=0.0019  Score=43.91  Aligned_cols=65  Identities=14%  Similarity=0.257  Sum_probs=40.3

Q ss_pred             EecCCcEEEEEEeCCC--CCcceEEEEeCCC--cC-----CC-CCC---------ce-eEe-cCCeEEEEEEccCCCCCC
Q psy3823          24 ALRNEQVLVSCTVDAN--PQAQYFTWAFNNS--GT-----AP-RPL---------TS-YSI-QDGSTSVARYTPTSELEY   82 (365)
Q Consensus        24 v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~--~~-----l~-~~~---------~~-~~~-~~~~~~~l~i~~~~~~d~   82 (365)
                      ++.|++++|.|++.+.  ... .+.|+|...  .+     +. ...         +. ... .....-.|+|.+++.+|+
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGG-FMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCTTCCEEEEECCCC-----C-CEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             ecCCCCcEEEEEECCCCccCC-cEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            5789999999995443  233 788988531  10     01 100         11 111 223445799999999999


Q ss_pred             eEEEEEE
Q psy3823          83 GTLLCWA   89 (365)
Q Consensus        83 G~Y~C~a   89 (365)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.66  E-value=0.0013  Score=45.58  Aligned_cols=66  Identities=12%  Similarity=0.110  Sum_probs=42.3

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeC--CCCC-------CCC---------CCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFN--NSDT-------APR---------PLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~--~~~~-------~~~---------~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|.|.+.|+.-.. .+.|++.  |+..       ...         ..+..+  ....+...|.|++++.+|.
T Consensus        12 ~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eDt   91 (115)
T d1f3dh1          12 VKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFEDS   91 (115)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCCc
Confidence            78899999999998753222 4788763  1100       000         011112  2234455699999999999


Q ss_pred             eEEEEEE
Q psy3823         295 GTLLCWA  301 (365)
Q Consensus       295 G~Y~C~a  301 (365)
                      +.|.|..
T Consensus        92 AvYYCAr   98 (115)
T d1f3dh1          92 AVYYCAN   98 (115)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9999954

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.66  E-value=0.0096  Score=41.18  Aligned_cols=71  Identities=8%  Similarity=0.047  Sum_probs=43.9

Q ss_pred             EEEEecCCcEEEEEEeCCCCCc--ceEEEEeC--CCc-----CCCC-CC---------cee--EecCCeEEEEEEccCCC
Q psy3823          21 IYGALRNEQVLVSCTVDANPQA--QYFTWAFN--NSG-----TAPR-PL---------TSY--SIQDGSTSVARYTPTSE   79 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~--~~v~W~~~--~~~-----~l~~-~~---------~~~--~~~~~~~~~l~i~~~~~   79 (365)
                      .-.++.|++++|.|++.+..-.  ..+.|+|.  ++.     .+.. ..         +..  .....+.-.|.+.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            3457899999999996554321  16789873  221     0011 11         111  11233445799999999


Q ss_pred             CCCeEEEEEEEe
Q psy3823          80 LEYGTLLCWARN   91 (365)
Q Consensus        80 ~d~G~Y~C~a~~   91 (365)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (119)
T d1ncwh1          89 EDTATYYCAGLL  100 (119)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCceEEEEeEec
Confidence            999999997543

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.66  E-value=0.016  Score=40.36  Aligned_cols=72  Identities=11%  Similarity=0.146  Sum_probs=44.5

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCc-ceEEEEeCC--Cc-----CCC-C-----------CCceeEe-cCCeEEEEEEccC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNN--SG-----TAP-R-----------PLTSYSI-QDGSTSVARYTPT   77 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~--~~-----~l~-~-----------~~~~~~~-~~~~~~~l~i~~~   77 (365)
                      .....+..|+++.|.|++.+..-. ..+.|+|-.  +.     .+. .           ++..... .....-.|.+.++
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L   86 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSL   86 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecc
Confidence            344567899999999996554322 267888732  11     000 1           1111122 2234557999999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        87 ~~eDTA~YYCAR~   99 (124)
T d2b1hh1          87 KPSDTALYYCARL   99 (124)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEEEeec
Confidence            9999999999543

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.65  E-value=0.0034  Score=44.16  Aligned_cols=70  Identities=13%  Similarity=0.159  Sum_probs=44.0

Q ss_pred             eecCceEEEEEEEeee-CCC--ceeEEEeCCCCCCCCCC-ceeEeeCCCEE---EEEEcCCCcccCeEEEEEEEcCC
Q psy3823         236 ALRNEQVLVSCTVDAN-PQA--QYFTWAFNNSDTAPRPL-TSYSIQDGSTS---VARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~~s---~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      ...++.+.|.|.+.++ |.+  ..+.|+.+|........ ......++..+   .|.|..-.+.....|+|.|.+..
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            4567889999999986 432  25889998865433222 22334566544   45444333334568999999865

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.65  E-value=0.0069  Score=42.29  Aligned_cols=69  Identities=10%  Similarity=0.042  Sum_probs=43.7

Q ss_pred             EEEEecCCcEEEEEEeCCCC--CcceEEEEeCCC--cC-----CC--CCC---------cee-Ee-cCCeEEEEEEccCC
Q psy3823          21 IYGALRNEQVLVSCTVDANP--QAQYFTWAFNNS--GT-----AP--RPL---------TSY-SI-QDGSTSVARYTPTS   78 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~--~~-----l~--~~~---------~~~-~~-~~~~~~~l~i~~~~   78 (365)
                      .-.++.|++++|.|++.+..  .. .+.|+|...  .+     +.  ...         +.. .. .....-.|+|.+++
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~   87 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAH-TMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEeECCccCcCc-ccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccC
Confidence            34578999999999954432  33 788988432  10     00  000         111 11 22345579999999


Q ss_pred             CCCCeEEEEEEE
Q psy3823          79 ELEYGTLLCWAR   90 (365)
Q Consensus        79 ~~d~G~Y~C~a~   90 (365)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (125)
T d1op3h1          88 VEDTAIYYCARK   99 (125)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CccceeEeEeec
Confidence            999999999754

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.65  E-value=0.0032  Score=43.51  Aligned_cols=67  Identities=10%  Similarity=0.113  Sum_probs=44.2

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCC----------------CCCCCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDT----------------APRPLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~----------------~~~~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+++.|+|.+.|+.-.. .+.|.+..  +..                .....+..+  ....+...|.+++++.+|.
T Consensus        12 ~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eDT   91 (117)
T d1jnhb1          12 ARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDS   91 (117)
T ss_dssp             CCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCcc
Confidence            68899999999999865443 57887631  110                000112222  2223456799999999999


Q ss_pred             eEEEEEEE
Q psy3823         295 GTLLCWAR  302 (365)
Q Consensus       295 G~Y~C~a~  302 (365)
                      +.|.|...
T Consensus        92 AvYYCAr~   99 (117)
T d1jnhb1          92 AVYSCSRG   99 (117)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99999653

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.65  E-value=0.0038  Score=43.52  Aligned_cols=68  Identities=7%  Similarity=0.051  Sum_probs=44.2

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCCC------CC----------CCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDTA------PR----------PLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~~------~~----------~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|.+..  +...      ..          ..+..+  ....+...|.|++++.+|.
T Consensus        12 vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eDt   91 (121)
T d1ol0a_          12 VQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAEDT   91 (121)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccccc
Confidence            78899999999998754332 47887632  2110      00          011112  2234456799999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (121)
T d1ol0a_          92 AVYYCAREP  100 (121)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEEec
Confidence            999997654

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.64  E-value=0.012  Score=41.11  Aligned_cols=91  Identities=11%  Similarity=0.114  Sum_probs=0.0

Q ss_pred             CceEEEEecCCcEEEEEEeCCCCCcc-eEEEEeCCCc--------------------CCCCCCceeEecCCeEEEEEEcc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDANPQAQ-YFTWAFNNSG--------------------TAPRPLTSYSIQDGSTSVARYTP   76 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~p~~~-~v~W~~~~~~--------------------~l~~~~~~~~~~~~~~~~l~i~~   76 (365)
                      |.....++.|+++.|.|++.+..-.. .+.|+|....                    .+...-........+.-.|.+.+
T Consensus         5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~   84 (126)
T d1lmka1           5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSS   84 (126)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecc


Q ss_pred             CCCCCCeEEEEEEEeCCCCCc-------ccEEEEEEecc
Q psy3823          77 TSELEYGTLLCWARNEQGNQR-------TPCTFHVVKAG  108 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~~~~~~~~-------~~~~l~V~~~~  108 (365)
                      ++.+|++.|.|..........       .-..|+|.+++
T Consensus        85 L~~eDTAvYYCAr~~~~~~~~~~fd~WGqGT~VTVSSa~  123 (126)
T d1lmka1          85 LTSEDSAVYYCARGEDYYAYWYVLDYWGQGTTVTVSSGG  123 (126)
T ss_dssp             CCGGGCEEEEEEEEEETTSSCCCCCEECCCEEEEECCCC
T ss_pred             cCCCcceEEEEeecCCCcCCcccccccCCCeEEEEcCcc

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.64  E-value=0.0026  Score=43.81  Aligned_cols=66  Identities=12%  Similarity=0.207  Sum_probs=43.5

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCCC------CCC----------CceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDTA------PRP----------LTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~~------~~~----------~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.... .+.|.+..  +...      ...          .+..+  ....+...|.+++++.+|.
T Consensus        12 ~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~eDt   91 (116)
T d1mjuh1          12 VKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDS   91 (116)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCCCc
Confidence            78999999999999865433 57887631  1110      000          11122  2234456799999999999


Q ss_pred             eEEEEEE
Q psy3823         295 GTLLCWA  301 (365)
Q Consensus       295 G~Y~C~a  301 (365)
                      +.|.|-.
T Consensus        92 AvYYCAr   98 (116)
T d1mjuh1          92 AVYYCAN   98 (116)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEcc
Confidence            9999964

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.64  E-value=0.0033  Score=43.76  Aligned_cols=67  Identities=7%  Similarity=0.090  Sum_probs=43.3

Q ss_pred             eecCceEEEEEEEeeeCC--Cc-eeEEEeCC--CCCC------CCC---------CceeE--eeCCCEEEEEEcCCCccc
Q psy3823         236 ALRNEQVLVSCTVDANPQ--AQ-YFTWAFNN--SDTA------PRP---------LTSYS--IQDGSTSVARYTPTSELE  293 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~--~~-~~~W~~~~--~~~~------~~~---------~~~~~--~~~~~~s~l~i~~v~~~d  293 (365)
                      +.+|+.+.|+|.+.|+..  .. .+.|++..  +...      ...         .+..+  ....+...|.|++++.+|
T Consensus        12 vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~eD   91 (120)
T d1ai1h1          12 IKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNED   91 (120)
T ss_dssp             ECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             ECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeeccc
Confidence            788999999999998643  22 47787642  1110      000         11111  223445669999999999


Q ss_pred             CeEEEEEEE
Q psy3823         294 YGTLLCWAR  302 (365)
Q Consensus       294 ~G~Y~C~a~  302 (365)
                      .+.|.|...
T Consensus        92 tAvYYCAr~  100 (120)
T d1ai1h1          92 TAMYYCSRE  100 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             eeEEEEEec
Confidence            999999654

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.63  E-value=0.0024  Score=44.21  Aligned_cols=66  Identities=11%  Similarity=0.109  Sum_probs=43.5

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCC--------CCC----------CceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTA--------PRP----------LTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~--------~~~----------~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+++.|+|.+.|+.... .+.|.+......        ...          .+..+  ....+...|.+++++.+|.
T Consensus        12 ~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eDT   91 (118)
T d2jelh1          12 VRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSEDS   91 (118)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCcc
Confidence            78999999999999875443 588876321110        000          11111  2233456799999999999


Q ss_pred             eEEEEEE
Q psy3823         295 GTLLCWA  301 (365)
Q Consensus       295 G~Y~C~a  301 (365)
                      +.|.|..
T Consensus        92 AvYYCAr   98 (118)
T d2jelh1          92 AIYYCAR   98 (118)
T ss_dssp             EEEEEEE
T ss_pred             eeeeEEE
Confidence            9999954

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.63  E-value=0.0072  Score=42.39  Aligned_cols=72  Identities=15%  Similarity=0.103  Sum_probs=45.0

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCc-ceEEEEeCCC--cC-----C-CCC----------Cce-eE-ecCCeEEEEEEccCC
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQA-QYFTWAFNNS--GT-----A-PRP----------LTS-YS-IQDGSTSVARYTPTS   78 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~~--~~-----l-~~~----------~~~-~~-~~~~~~~~l~i~~~~   78 (365)
                      ..-.++.|+++.|.|++.+..-. ..+.|+|...  .+     + ...          .+. .. ......-.|.+.+++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR   87 (128)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence            34557899999999996554332 2678877421  10     0 010          011 11 122345579999999


Q ss_pred             CCCCeEEEEEEEe
Q psy3823          79 ELEYGTLLCWARN   91 (365)
Q Consensus        79 ~~d~G~Y~C~a~~   91 (365)
                      .+|++.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (128)
T d2nxyd1          88 SDDTAVYFCAGVY  100 (128)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccCceEEEEeEEe
Confidence            9999999998654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.63  E-value=0.013  Score=40.53  Aligned_cols=71  Identities=13%  Similarity=0.147  Sum_probs=44.2

Q ss_pred             eEEEEecCCcEEEEEEeCCCCCc-ceEEEEeCC--CcC-----CC-CCC----------ce-eE-ecCCeEEEEEEccCC
Q psy3823          20 RIYGALRNEQVLVSCTVDANPQA-QYFTWAFNN--SGT-----AP-RPL----------TS-YS-IQDGSTSVARYTPTS   78 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~--~~~-----l~-~~~----------~~-~~-~~~~~~~~l~i~~~~   78 (365)
                      ..-.++.|++++|.|.+.+..-. ..+.|+|..  +.+     +. ...          +. .. ....+.-.|.+.+++
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~   87 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence            34457899999999995443221 278888742  210     11 110          00 11 122345579999999


Q ss_pred             CCCCeEEEEEEE
Q psy3823          79 ELEYGTLLCWAR   90 (365)
Q Consensus        79 ~~d~G~Y~C~a~   90 (365)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (120)
T d1ad9b1          88 SEDTAFYFCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEEEc
Confidence            999999999754

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.63  E-value=0.011  Score=41.01  Aligned_cols=69  Identities=12%  Similarity=0.085  Sum_probs=43.9

Q ss_pred             EEEEecCCcEEEEEEeCCC--CCcceEEEEeC--CCcCC------C---CC-C---------cee-E-ecCCeEEEEEEc
Q psy3823          21 IYGALRNEQVLVSCTVDAN--PQAQYFTWAFN--NSGTA------P---RP-L---------TSY-S-IQDGSTSVARYT   75 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~--~~~~l------~---~~-~---------~~~-~-~~~~~~~~l~i~   75 (365)
                      .-.++.|++++|.|++.+.  ... .+.|+|.  ++. +      .   .. .         +.. . ....+.-.|.+.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkg-lewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~   86 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFTDY-YMSWVRQPPGKA-LEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSC-CEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCC-ccCccccCCCcc-eeeeeeccccccCCcchhchheeecceeeeecccceecccee
Confidence            3457889999999995443  233 7889874  222 1      0   00 0         111 1 122344579999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy3823          76 PTSELEYGTLLCWARN   91 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a~~   91 (365)
                      +++.+|++.|.|....
T Consensus        87 sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          87 TLRAEDSATYYCARDH  102 (122)
T ss_dssp             SCCGGGCEEEEEEECC
T ss_pred             eeccCcceEEEEEecC
Confidence            9999999999998543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.61  E-value=0.0031  Score=43.68  Aligned_cols=67  Identities=12%  Similarity=0.167  Sum_probs=43.6

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCC----------------CCCCCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDT----------------APRPLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~----------------~~~~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|.+..  +..                .....+..+  ....+...|.|++++.+|.
T Consensus        12 ~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eDt   91 (118)
T d1ct8b1          12 VKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDS   91 (118)
T ss_dssp             ECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCcc
Confidence            78899999999998864333 57777632  110                000111112  2234556799999999999


Q ss_pred             eEEEEEEE
Q psy3823         295 GTLLCWAR  302 (365)
Q Consensus       295 G~Y~C~a~  302 (365)
                      +.|.|...
T Consensus        92 AvYYCAr~   99 (118)
T d1ct8b1          92 AIYYCARY   99 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeee
Confidence            99999654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.61  E-value=0.0081  Score=42.23  Aligned_cols=71  Identities=17%  Similarity=0.119  Sum_probs=44.9

Q ss_pred             eEEEEecCCcEEEEEEeCCC--CCcceEEEEeCCCcC-C------C--CC---------Cce-eE-ecCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNSGT-A------P--RP---------LTS-YS-IQDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~~~-l------~--~~---------~~~-~~-~~~~~~~~l~i~~~   77 (365)
                      ....++.|+++.|.|++.+.  ... .+.|+|..... +      .  ..         .+. .. ....+.-.|.+.++
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L   85 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMY-GFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNL   85 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTC-EEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEEeCCCccCC-CcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeecc
Confidence            34557899999999996553  233 78898843210 1      0  00         011 11 12234457999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy3823          78 SELEYGTLLCWARN   91 (365)
Q Consensus        78 ~~~d~G~Y~C~a~~   91 (365)
                      +.+|++.|.|....
T Consensus        86 ~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          86 RSDDTAVYYCARDF   99 (130)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCcEEEEEEeec
Confidence            99999999997543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.61  E-value=0.0033  Score=43.60  Aligned_cols=68  Identities=12%  Similarity=0.119  Sum_probs=44.8

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCC--C----------------CCCCCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSD--T----------------APRPLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~--~----------------~~~~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.... .+.|.+....  .                .....+..+  ....+...|.+++++.+|.
T Consensus        12 ~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eDT   91 (119)
T d1rz7h1          12 KKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSEDT   91 (119)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcccc
Confidence            78899999999999865433 4888763211  0                000112222  2334566799999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (119)
T d1rz7h1          92 AVYYCAADP  100 (119)
T ss_dssp             EEEEEEECT
T ss_pred             eEEEEeecC
Confidence            999996643

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0038  Score=42.61  Aligned_cols=70  Identities=14%  Similarity=0.222  Sum_probs=41.2

Q ss_pred             eecCceEEEEEEEeee-CCC-c-eeEEEeCCCCCCCCCCce-eEeeCCCE---EEEEEcCCCcccCeEEEEEEEcCC
Q psy3823         236 ALRNEQVLVSCTVDAN-PQA-Q-YFTWAFNNSDTAPRPLTS-YSIQDGST---SVARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~-p~~-~-~~~W~~~~~~~~~~~~~~-~~~~~~~~---s~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      +..++.++|.|.+.++ |.. . .+.|.+++.......... ....+++.   +.|.|..-.......|+|.|.+..
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            4567889999999985 442 2 467777776433221111 22334443   445444333334678999999864

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.60  E-value=0.0046  Score=42.73  Aligned_cols=66  Identities=11%  Similarity=0.187  Sum_probs=42.7

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeC--CCCCC----------------CCCCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFN--NSDTA----------------PRPLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~--~~~~~----------------~~~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.... .+.|.+.  |+...                ....+..+  ....+...|.|++++.+|.
T Consensus        12 ~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eDt   91 (117)
T d1mfah1          12 ARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSEDS   91 (117)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCcc
Confidence            78899999999998864333 4777753  11100                00112222  2234456799999999999


Q ss_pred             eEEEEEE
Q psy3823         295 GTLLCWA  301 (365)
Q Consensus       295 G~Y~C~a  301 (365)
                      +.|.|..
T Consensus        92 AvYYCAr   98 (117)
T d1mfah1          92 AVYYCTR   98 (117)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEec
Confidence            9999964

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.60  E-value=0.0016  Score=44.67  Aligned_cols=69  Identities=12%  Similarity=0.117  Sum_probs=41.3

Q ss_pred             ecCceEEEEEEEeee-CCC--ceeEEEeCCCCCCCCC-CceeEeeCCCEE---EEEEcCCCcccCeEEEEEEEcCC
Q psy3823         237 LRNEQVLVSCTVDAN-PQA--QYFTWAFNNSDTAPRP-LTSYSIQDGSTS---VARYTPTSELEYGTLLCWARNEQ  305 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~-p~~--~~~~W~~~~~~~~~~~-~~~~~~~~~~~s---~l~i~~v~~~d~G~Y~C~a~n~~  305 (365)
                      ..+..++|.|.+.++ |.+  ..+.|.++|....... .......++..+   .|.|..-.+...-.|+|.|.+..
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            356778999999885 443  2589999887433221 111224455543   44444333333557999999864

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.59  E-value=0.0045  Score=42.78  Aligned_cols=71  Identities=13%  Similarity=0.196  Sum_probs=44.0

Q ss_pred             CceEEEEecCCcEEEEEEeCCC--CCcceEEEEeC--CCcC-----CC-CCC----------cee-E-ecCCeEEEEEEc
Q psy3823          18 QQRIYGALRNEQVLVSCTVDAN--PQAQYFTWAFN--NSGT-----AP-RPL----------TSY-S-IQDGSTSVARYT   75 (365)
Q Consensus        18 ~~~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~--~~~~-----l~-~~~----------~~~-~-~~~~~~~~l~i~   75 (365)
                      |.....+..|++++|.|++.+.  ... .+.|+|.  ++.+     +. ...          +.. . ....+.-.|.|.
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~-~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~   84 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNY-WMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS   84 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGS-EEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCC-ceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeec
Confidence            3445567899999999995443  233 7888873  2210     00 000          111 1 122344579999


Q ss_pred             cCCCCCCeEEEEEE
Q psy3823          76 PTSELEYGTLLCWA   89 (365)
Q Consensus        76 ~~~~~d~G~Y~C~a   89 (365)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDtAvYYCAr   98 (117)
T d1mfah1          85 SLTSEDSAVYYCTR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEec
Confidence            99999999999964

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.59  E-value=0.0021  Score=44.62  Aligned_cols=66  Identities=14%  Similarity=0.227  Sum_probs=43.3

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCC------CCCC----------CceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDT------APRP----------LTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~------~~~~----------~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+++.|+|.+.|+.... .+.|.+..  +..      ....          .+..+  ....+...|.+++++.+|.
T Consensus        12 ~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDT   91 (119)
T d1eapb1          12 VKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSEDS   91 (119)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCcc
Confidence            78899999999999865333 58888642  110      0000          01111  2233456799999999999


Q ss_pred             eEEEEEE
Q psy3823         295 GTLLCWA  301 (365)
Q Consensus       295 G~Y~C~a  301 (365)
                      +.|.|..
T Consensus        92 AvYYCAr   98 (119)
T d1eapb1          92 AVYFCKR   98 (119)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            9999964

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.59  E-value=0.0022  Score=44.39  Aligned_cols=66  Identities=14%  Similarity=0.149  Sum_probs=42.6

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCC--C------CCCC----------CceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSD--T------APRP----------LTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~--~------~~~~----------~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|.+....  .      ....          .+..+  ....+.-.|.+++++.+|+
T Consensus        12 ~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eDt   91 (118)
T d1nlbh1          12 KKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNEDT   91 (118)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCcc
Confidence            78999999999998864332 4888763211  0      0001          11112  2223455699999999999


Q ss_pred             eEEEEEE
Q psy3823         295 GTLLCWA  301 (365)
Q Consensus       295 G~Y~C~a  301 (365)
                      +.|.|-.
T Consensus        92 AvYYCAr   98 (118)
T d1nlbh1          92 ATYFCAR   98 (118)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEee
Confidence            9999953

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.58  E-value=0.0026  Score=43.14  Aligned_cols=69  Identities=12%  Similarity=0.159  Sum_probs=39.8

Q ss_pred             cCceEEEEEEEeeeCCCc-eeEEEeCC--CCC----------------CCCCCceeEe--eCCCEEEEEEcCCCcccCeE
Q psy3823         238 RNEQVLVSCTVDANPQAQ-YFTWAFNN--SDT----------------APRPLTSYSI--QDGSTSVARYTPTSELEYGT  296 (365)
Q Consensus       238 ~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~----------------~~~~~~~~~~--~~~~~s~l~i~~v~~~d~G~  296 (365)
                      +|+++.|+|.+.|+.-.. .+.|.+..  +..                .....+..+.  ...+...|.+++++.+|.+.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            589999999999865433 58887632  111                0001122222  22345579999999999999


Q ss_pred             EEEEEEcCCc
Q psy3823         297 LLCWARNEQG  306 (365)
Q Consensus       297 Y~C~a~n~~g  306 (365)
                      |.|......+
T Consensus        81 YYCAr~~~~~   90 (103)
T d1oari_          81 YYCARMWYYG   90 (103)
T ss_dssp             EEEEEEECSS
T ss_pred             EEeEEECCCC
Confidence            9997654433

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.57  E-value=0.0035  Score=43.31  Aligned_cols=67  Identities=16%  Similarity=0.177  Sum_probs=42.5

Q ss_pred             EEEEecCCcEEEEEEeCCCC--CcceEEEEeCC--Cc-----CCC-CC-C---------cee-Ee-cCCeEEEEEEccCC
Q psy3823          21 IYGALRNEQVLVSCTVDANP--QAQYFTWAFNN--SG-----TAP-RP-L---------TSY-SI-QDGSTSVARYTPTS   78 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~--~~-----~l~-~~-~---------~~~-~~-~~~~~~~l~i~~~~   78 (365)
                      ...+..|++++|.|++.+..  .. .+.|+|..  +.     .+. .. .         +.. .. ...+.-.|.+.+++
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~   87 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDF-SMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK   87 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCC-ceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc
Confidence            35578999999999955432  34 78898742  11     011 11 1         111 11 22344479999999


Q ss_pred             CCCCeEEEEE
Q psy3823          79 ELEYGTLLCW   88 (365)
Q Consensus        79 ~~d~G~Y~C~   88 (365)
                      .+|++.|.|.
T Consensus        88 ~eDtAvYYCA   97 (118)
T d1nlbh1          88 NEDTATYFCA   97 (118)
T ss_dssp             GGGCEEEEEE
T ss_pred             cCcceEEEEe
Confidence            9999999995

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.57  E-value=0.0052  Score=42.39  Aligned_cols=70  Identities=11%  Similarity=0.150  Sum_probs=43.8

Q ss_pred             eEEEEecCCcEEEEEEeCCC--CCcceEEEEeCC--Cc-----CCC-C-----------CCceeEe-cCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNN--SG-----TAP-R-----------PLTSYSI-QDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~--~~-----~l~-~-----------~~~~~~~-~~~~~~~l~i~~~   77 (365)
                      ..-.++.|+++.|.|++.+.  ... .+.|+|--  +.     .+. .           ++..... ...+.-.|.|.++
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~~~y-~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L   86 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSFTTY-WMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSL   86 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCSSSS-EEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCC-ceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccccc
Confidence            34456889999999995543  334 78898832  11     000 0           1111111 2234457999999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (117)
T d1jnhb1          87 TSEDSAVYSCSRG   99 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999643

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.57  E-value=0.0059  Score=42.69  Aligned_cols=69  Identities=13%  Similarity=0.135  Sum_probs=44.0

Q ss_pred             EEEEecCCcEEEEEEeCCC--CCcceEEEEeCCC--cC-----C-CCCCc----------ee-E-ecCCeEEEEEEccCC
Q psy3823          21 IYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNS--GT-----A-PRPLT----------SY-S-IQDGSTSVARYTPTS   78 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~--~~-----l-~~~~~----------~~-~-~~~~~~~~l~i~~~~   78 (365)
                      .-.++.|+++.|.|++.+.  ... .+.|+|...  .+     + .....          .. . ....+.-.|.+.+++
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~-~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~   86 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIE-YMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK   86 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCC-EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCcccccc-cccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc
Confidence            3457889999999995433  334 889998532  10     1 11110          11 1 122344579999999


Q ss_pred             CCCCeEEEEEEE
Q psy3823          79 ELEYGTLLCWAR   90 (365)
Q Consensus        79 ~~d~G~Y~C~a~   90 (365)
                      .+|++.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (124)
T d1zvya1          87 SEDTAIYTCGAT   98 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEeec
Confidence            999999999764

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.55  E-value=0.0082  Score=41.97  Aligned_cols=70  Identities=9%  Similarity=0.066  Sum_probs=44.1

Q ss_pred             EEEEecCCcEEEEEEeCCCC--CcceEEEEeCCC--c-----CCC-CCCc----------e-eE-ecCCeEEEEEEccCC
Q psy3823          21 IYGALRNEQVLVSCTVDANP--QAQYFTWAFNNS--G-----TAP-RPLT----------S-YS-IQDGSTSVARYTPTS   78 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~~--~-----~l~-~~~~----------~-~~-~~~~~~~~l~i~~~~   78 (365)
                      .-.++.|++++|.|++.+..  .. .+.|+|...  .     .+. ....          . .. ....+.-.|.|.+++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y-~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~   87 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDY-AMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLR   87 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEECCccccCC-cceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeec
Confidence            44578999999999954433  23 788988432  1     011 1110          0 11 122344579999999


Q ss_pred             CCCCeEEEEEEEe
Q psy3823          79 ELEYGTLLCWARN   91 (365)
Q Consensus        79 ~~d~G~Y~C~a~~   91 (365)
                      .+|++.|.|....
T Consensus        88 ~eDtavYYCAr~~  100 (126)
T d1dfbh1          88 AEDMALYYCVKGR  100 (126)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCcceEEEEEecc
Confidence            9999999997543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.55  E-value=0.0063  Score=41.13  Aligned_cols=65  Identities=12%  Similarity=0.197  Sum_probs=36.5

Q ss_pred             cCCcEEEEEEeCCC--CCcceEEEEeCC--CcC-----CC-CC----------CceeEe--cCCeEEEEEEccCCCCCCe
Q psy3823          26 RNEQVLVSCTVDAN--PQAQYFTWAFNN--SGT-----AP-RP----------LTSYSI--QDGSTSVARYTPTSELEYG   83 (365)
Q Consensus        26 ~G~~~~l~C~~~~~--p~~~~v~W~~~~--~~~-----l~-~~----------~~~~~~--~~~~~~~l~i~~~~~~d~G   83 (365)
                      .|++++|.|++.+.  ... .+.|+|-.  +.+     +. ..          .+....  ...+.-.|+|.+++.+|++
T Consensus         1 PG~sl~LsC~~SG~s~~~y-~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTA   79 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSY-WMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSA   79 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTS-EEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCS
T ss_pred             CCCCeEEEEEEECCChhcC-ceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccE
Confidence            48999999996553  233 78998743  210     01 10          111111  2234457999999999999


Q ss_pred             EEEEEEEe
Q psy3823          84 TLLCWARN   91 (365)
Q Consensus        84 ~Y~C~a~~   91 (365)
                      .|.|....
T Consensus        80 vYYCAr~~   87 (103)
T d1oari_          80 VYYCARMW   87 (103)
T ss_dssp             EEEEEEEE
T ss_pred             EEEeEEEC
Confidence            99997544

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.55  E-value=0.004  Score=43.92  Aligned_cols=67  Identities=9%  Similarity=0.104  Sum_probs=42.8

Q ss_pred             eecCceEEEEEEEeeeCCC--c-eeEEEeC--CCCCC---------------CCCCceeE--eeCCCEEEEEEcCCCccc
Q psy3823         236 ALRNEQVLVSCTVDANPQA--Q-YFTWAFN--NSDTA---------------PRPLTSYS--IQDGSTSVARYTPTSELE  293 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~--~-~~~W~~~--~~~~~---------------~~~~~~~~--~~~~~~s~l~i~~v~~~d  293 (365)
                      +.+|+.+.|+|.+.|..-.  . .+.|++.  |+...               ....+..+  ....+...|.|++++.+|
T Consensus        12 vkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~eD   91 (126)
T d1etzb1          12 LQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTSD   91 (126)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccccc
Confidence            7789999999999875322  1 3568753  21110               00112222  223445679999999999


Q ss_pred             CeEEEEEEE
Q psy3823         294 YGTLLCWAR  302 (365)
Q Consensus       294 ~G~Y~C~a~  302 (365)
                      ++.|.|...
T Consensus        92 tAvYyCAr~  100 (126)
T d1etzb1          92 TATYHCARR  100 (126)
T ss_dssp             CEEEEEEEE
T ss_pred             cceEEEEEe
Confidence            999999754

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.54  E-value=0.0065  Score=42.63  Aligned_cols=71  Identities=11%  Similarity=0.180  Sum_probs=44.3

Q ss_pred             ceEEEEecCCcEEEEEEeCCCC--CcceEEEEeCC--Cc-----CC-CCCC----------ce-e-EecCCeEEEEEEcc
Q psy3823          19 QRIYGALRNEQVLVSCTVDANP--QAQYFTWAFNN--SG-----TA-PRPL----------TS-Y-SIQDGSTSVARYTP   76 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~--~~-----~l-~~~~----------~~-~-~~~~~~~~~l~i~~   76 (365)
                      ...-.++.|++++|.|++.+..  .. .+.|+|-.  +.     .+ ....          +. . .....+.-.|.|.+
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~~~~y-~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~s   85 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYSFTSY-WIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNS   85 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEEccCCCCCC-CCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeec
Confidence            3445578999999999954432  23 78888742  11     01 0110          11 1 11223445799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy3823          77 TSELEYGTLLCWAR   90 (365)
Q Consensus        77 ~~~~d~G~Y~C~a~   90 (365)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAR~   99 (125)
T d1rihh1          86 LTSEDSAVYYCARE   99 (125)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcccceEEEEeee
Confidence            99999999999754

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.54  E-value=0.0048  Score=43.21  Aligned_cols=71  Identities=10%  Similarity=0.022  Sum_probs=44.1

Q ss_pred             ceEEEEecCCcEEEEEEeCCCCCc-ceEEEEeCC--CcC-----CC-CC-C---------ceeE--ecCCeEEEEEEccC
Q psy3823          19 QRIYGALRNEQVLVSCTVDANPQA-QYFTWAFNN--SGT-----AP-RP-L---------TSYS--IQDGSTSVARYTPT   77 (365)
Q Consensus        19 ~~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~--~~~-----l~-~~-~---------~~~~--~~~~~~~~l~i~~~   77 (365)
                      ...-.++.|+++.|.|++.+..-. -.+.|+|..  +.+     +. .. .         +...  ....+.-.|.+.++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L   86 (127)
T d1n0xh1           7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEcc
Confidence            344567899999999995543222 278898742  220     11 11 1         1111  12234457999999


Q ss_pred             CCCCCeEEEEEE
Q psy3823          78 SELEYGTLLCWA   89 (365)
Q Consensus        78 ~~~d~G~Y~C~a   89 (365)
                      +.+|++.|.|.-
T Consensus        87 ~~eDtAvYYCAR   98 (127)
T d1n0xh1          87 RSADTAVYYCAR   98 (127)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEEe
Confidence            999999999963

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.54  E-value=0.0074  Score=42.79  Aligned_cols=68  Identities=13%  Similarity=0.155  Sum_probs=44.1

Q ss_pred             eecCceEEEEEEEeeeCCCc---eeEEEeCCCCCCCC-----------------CCceeE--eeCCCEEEEEEcCCCccc
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ---YFTWAFNNSDTAPR-----------------PLTSYS--IQDGSTSVARYTPTSELE  293 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~---~~~W~~~~~~~~~~-----------------~~~~~~--~~~~~~s~l~i~~v~~~d  293 (365)
                      +.+|+.+.|+|.+.|+....   .+.|++.......+                 ..+..+  ....+...|.|++++.+|
T Consensus        12 vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~eD   91 (132)
T d1tjgh1          12 VKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVD   91 (132)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCccc
Confidence            78899999999998764222   37898632111000                 011111  223345669999999999


Q ss_pred             CeEEEEEEEc
Q psy3823         294 YGTLLCWARN  303 (365)
Q Consensus       294 ~G~Y~C~a~n  303 (365)
                      ++.|.|-...
T Consensus        92 tAvYYCAr~~  101 (132)
T d1tjgh1          92 TATYFCAHRR  101 (132)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEEEEec
Confidence            9999997654

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0017  Score=41.32  Aligned_cols=50  Identities=18%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             cCCcEEEEEEeCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEEEEEEccCCCCCCeEEEEE
Q psy3823          26 RNEQVLVSCTVDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTSVARYTPTSELEYGTLLCW   88 (365)
Q Consensus        26 ~G~~~~l~C~~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   88 (365)
                      .|+.+.|.|...  ... .+.|.+++...+.        ..+.  ++.+.--...|+|+|+|.
T Consensus        20 ~~~~V~L~C~t~--eE~-~I~W~kd~~se~~--------~~Gn--tltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          20 PGEMVVLTCDTP--EED-GITWTLDQSSEVL--------GSGK--TLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CCEEEEEECSSS--CCS-SCEEEETTCCCCC--------EESS--EEEEEECSGGGCEEEEEE
T ss_pred             CccEEEEecCCC--ccc-ccEEeeCCccccc--------cCCC--EEEEEEEeccCCcceeEe
Confidence            467899999532  234 7999999765121        1121  344444455699999996

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.53  E-value=0.0096  Score=41.73  Aligned_cols=70  Identities=9%  Similarity=0.061  Sum_probs=43.3

Q ss_pred             eEEEEecCCcEEEEEEeCCC--CCcceEEEEeCC--CcC-----CC-C-CC---------ceeE-e-cCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDAN--PQAQYFTWAFNN--SGT-----AP-R-PL---------TSYS-I-QDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~--~~~-----l~-~-~~---------~~~~-~-~~~~~~~l~i~~~   77 (365)
                      ..-.+..|+++.|.|++.+.  ... .+.|+|..  +.+     +. . ..         +... . .....-.|.|.++
T Consensus         7 G~~lvkPg~sl~LsC~~SG~~~s~y-~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l   85 (126)
T d1rjca1           7 GGGSVQAGQSLRLSCATSGATSSSN-CMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSL   85 (126)
T ss_dssp             CCEEECTTCCEEEEEECC-CTTTCS-EEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEECCCCCcCC-ceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEecc
Confidence            34567899999999995443  334 78998843  220     11 1 11         1111 1 2234446999999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        86 ~~eDTAvYYCAr~   98 (126)
T d1rjca1          86 KPEDTAMYYCAAD   98 (126)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCceeEEEee
Confidence            9999999999754

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.51  E-value=0.013  Score=40.74  Aligned_cols=70  Identities=11%  Similarity=0.012  Sum_probs=43.5

Q ss_pred             EEEEecCCcEEEEEEeCCCCCc-ceEEEEeCC--CcC-----C-CCC-C---------ce-eEe-cCCeEEEEEEccCCC
Q psy3823          21 IYGALRNEQVLVSCTVDANPQA-QYFTWAFNN--SGT-----A-PRP-L---------TS-YSI-QDGSTSVARYTPTSE   79 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~~--~~~-----l-~~~-~---------~~-~~~-~~~~~~~l~i~~~~~   79 (365)
                      .-.++.|+++.|.|++.+..-. ..+.|+|-.  +.+     + ... .         +. ... .....-.|.+.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            4457899999999996554322 178998842  110     0 111 1         11 111 223445799999999


Q ss_pred             CCCeEEEEEEE
Q psy3823          80 LEYGTLLCWAR   90 (365)
Q Consensus        80 ~d~G~Y~C~a~   90 (365)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (122)
T d1bz7b1          89 EDTAIYYCTRG   99 (122)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cCceEEEeecC
Confidence            99999999654

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.002  Score=41.93  Aligned_cols=52  Identities=25%  Similarity=0.596  Sum_probs=38.5

Q ss_pred             eecCCcEEEEEEEEecCCCCeeEEEeCCeEEeeCCCCceEEeeceEEEeeecC-CCCeEEEEE
Q psy3823         132 LNEGVDIYFDCHIQANPPYKKLIWTHNGITISNNASAGRIITNQTLVLQSVTR-HSGGLYACS  193 (365)
Q Consensus       132 ~~~g~~v~l~C~~~~~p~~~~i~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~  193 (365)
                      -..|.+|+|+|...+.  .. |.|-+++..+.....       ..|.+.+... +++|.|.|.
T Consensus        11 SISGTtV~LTCP~~~~--~~-I~Wkkn~~~i~g~~~-------~~L~L~~FSE~e~SGyY~C~   63 (100)
T d1jbja2          11 SISGTSVELTCPLDSD--EN-LKWEKNGQELPQKHD-------KHLVLQDFSEVEDSGYYVCY   63 (100)
T ss_dssp             EEETTEEEEECSSCCC--TT-CEEEETTEEECSCCC-------SEEEEESCCTTTSCEEEEEE
T ss_pred             EEeCCEEEEECCCCCC--Cc-eEEeeccccCCCCCC-------cEEEEccccccccCcceEEe
Confidence            3479999999975432  33 999999998875332       3566666555 799999995

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.49  E-value=0.004  Score=43.53  Aligned_cols=67  Identities=7%  Similarity=0.060  Sum_probs=42.4

Q ss_pred             eecCceEEEEEEEeeeCCCc---eeEEEeC--CCCCC------C---------CCCceeE--eeCCCEEEEEEcCCCccc
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ---YFTWAFN--NSDTA------P---------RPLTSYS--IQDGSTSVARYTPTSELE  293 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~---~~~W~~~--~~~~~------~---------~~~~~~~--~~~~~~s~l~i~~v~~~d  293 (365)
                      +.+|+.++|+|.+.|+.-..   .+.|++.  |+...      .         ...+..+  ....+...|.|++++.+|
T Consensus        12 vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~eD   91 (123)
T d1r0ah1          12 VQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETAD   91 (123)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccccc
Confidence            77899999999998754221   3678763  21110      0         0011112  222345669999999999


Q ss_pred             CeEEEEEEE
Q psy3823         294 YGTLLCWAR  302 (365)
Q Consensus       294 ~G~Y~C~a~  302 (365)
                      +..|.|...
T Consensus        92 sAvYyCAr~  100 (123)
T d1r0ah1          92 TAIYYCAQS  100 (123)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEeeccc
Confidence            999999754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.48  E-value=0.0074  Score=42.79  Aligned_cols=67  Identities=12%  Similarity=0.098  Sum_probs=42.3

Q ss_pred             EEEecCCcEEEEEEeCCC----CCcceEEEEeCCC--cCC-------CCCC---------cee-Ee-cCCeEEEEEEccC
Q psy3823          22 YGALRNEQVLVSCTVDAN----PQAQYFTWAFNNS--GTA-------PRPL---------TSY-SI-QDGSTSVARYTPT   77 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~----p~~~~v~W~~~~~--~~l-------~~~~---------~~~-~~-~~~~~~~l~i~~~   77 (365)
                      -.+++|++++|.|++.+.    ... -+.|+|...  . +       ....         +.. .. .....-.|.|.++
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~-~~~WyRQ~pG~~-le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l   87 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGV-GVGWIRQPPGKA-LEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRV   87 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTC-EEEEEEECTTSC-CEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCC-ceEEEEECCCcc-cEEEEEecCCCccEeeeeeeecceecccccccEEEcccccC
Confidence            447889999999994432    223 588997422  1 1       0000         111 11 2234456999999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        88 ~~eDtAvYYCAr~  100 (132)
T d1tjgh1          88 SPVDTATYFCAHR  100 (132)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcccceEEEEEEe
Confidence            9999999999754

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.47  E-value=0.0066  Score=42.75  Aligned_cols=67  Identities=12%  Similarity=0.094  Sum_probs=41.6

Q ss_pred             EEEecCCcEEEEEEeCCC----CCcceEEEEeC--CCcCC-------CCCC---------cee-E-ecCCeEEEEEEccC
Q psy3823          22 YGALRNEQVLVSCTVDAN----PQAQYFTWAFN--NSGTA-------PRPL---------TSY-S-IQDGSTSVARYTPT   77 (365)
Q Consensus        22 ~~v~~G~~~~l~C~~~~~----p~~~~v~W~~~--~~~~l-------~~~~---------~~~-~-~~~~~~~~l~i~~~   77 (365)
                      -.+++|++++|.|.+.+.    ... .+.|+|.  ++. +       ....         +.. . ......-.|.|.++
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~-~~~W~RQ~pg~~-le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l   87 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGM-GVGWIRQPSGEG-LEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSV   87 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTE-EEEEEEEETTTC-CEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCC-CCeEEeCCCCcc-ceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecc
Confidence            357789999999994332    223 5679863  221 1       0110         111 1 12234457999999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        88 ~~eDtAvYyCAr~  100 (126)
T d1etzb1          88 DTSDTATYHCARR  100 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccccceEEEEEe
Confidence            9999999999743

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.47  E-value=0.0068  Score=42.53  Aligned_cols=69  Identities=16%  Similarity=0.135  Sum_probs=45.6

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCC--CC----------------CCCCCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNS--DT----------------APRPLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~--~~----------------~~~~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+++.|+|.+.|+.-.. .+.|.+...  ..                .....+..+  ....+...|.+++++.+|.
T Consensus        12 ~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eDT   91 (128)
T d2nxyd1          12 KKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDT   91 (128)
T ss_dssp             ECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccCc
Confidence            78999999999999875544 477765311  10                000112222  2224556799999999999


Q ss_pred             eEEEEEEEcC
Q psy3823         295 GTLLCWARNE  304 (365)
Q Consensus       295 G~Y~C~a~n~  304 (365)
                      +.|.|.....
T Consensus        92 A~YYCAr~~~  101 (128)
T d2nxyd1          92 AVYFCAGVYE  101 (128)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEeEEec
Confidence            9999987643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.45  E-value=0.0054  Score=42.92  Aligned_cols=68  Identities=6%  Similarity=0.040  Sum_probs=44.3

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCC--------CCCC----------CceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDT--------APRP----------LTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~--------~~~~----------~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.... .+.|.+.....        ....          .+..+  ....+...|.+++++.+|.
T Consensus        12 vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eDt   91 (126)
T d1dfbh1          12 VQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDM   91 (126)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCcc
Confidence            78899999999998865333 47887632110        0001          11112  2234556799999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      +.|.|....
T Consensus        92 avYYCAr~~  100 (126)
T d1dfbh1          92 ALYYCVKGR  100 (126)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEecc
Confidence            999997654

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.45  E-value=0.00097  Score=46.48  Aligned_cols=67  Identities=13%  Similarity=0.187  Sum_probs=40.6

Q ss_pred             cCceEEEEEEEeee-CCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCccc---CeEEEEEEEcCC
Q psy3823         238 RNEQVLVSCTVDAN-PQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSELE---YGTLLCWARNEQ  305 (365)
Q Consensus       238 ~g~~~~l~C~~~~~-p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~~d---~G~Y~C~a~n~~  305 (365)
                      .++.++|.|.+.++ |....|.|..++.... .........++..+......+..++   ...|+|.|.+..
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~-~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDY-KNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTE-EEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCc-EEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            35678999999985 4444799987764211 1111122445655444444454444   557999999864

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.44  E-value=0.0047  Score=43.05  Aligned_cols=68  Identities=7%  Similarity=0.064  Sum_probs=43.9

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCC------CCC----------CCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDT------APR----------PLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~------~~~----------~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|.+..  +..      ...          ..+..+  ....+...|.|++++.+|.
T Consensus        12 vkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eDt   91 (123)
T d1mqkh_          12 VQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDT   91 (123)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCcc
Confidence            78999999999998864333 47887632  100      000          111222  2233455699999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      +.|.|-...
T Consensus        92 AvYYCAr~~  100 (123)
T d1mqkh_          92 AMYYCVRHE  100 (123)
T ss_dssp             EEEEEEEEE
T ss_pred             cceeEEecC
Confidence            999997654

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.44  E-value=0.0048  Score=43.02  Aligned_cols=69  Identities=9%  Similarity=0.026  Sum_probs=44.5

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCCC------CC----------CCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDTA------PR----------PLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~~------~~----------~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|.+..  +...      ..          ..+..+  ....+...|.+++++.+|.
T Consensus        12 vkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eDT   91 (122)
T d1bz7b1          12 VQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDT   91 (122)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccCc
Confidence            78899999999999865433 47887631  1100      00          011111  2223455699999999999


Q ss_pred             eEEEEEEEcC
Q psy3823         295 GTLLCWARNE  304 (365)
Q Consensus       295 G~Y~C~a~n~  304 (365)
                      +.|.|.....
T Consensus        92 AvYYCAr~~~  101 (122)
T d1bz7b1          92 AIYYCTRGGT  101 (122)
T ss_dssp             EEEEEEEECC
T ss_pred             eEEEeecCCC
Confidence            9999976543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.44  E-value=0.0068  Score=42.66  Aligned_cols=69  Identities=16%  Similarity=0.102  Sum_probs=45.0

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCCCC------------------CCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTAPR------------------PLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~~~------------------~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|.+.......+                  ..+..+  ....+...|.+++++.+|+
T Consensus        11 ~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDt   90 (130)
T d1rhhb1          11 KKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDDT   90 (130)
T ss_dssp             ECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCCc
Confidence            78999999999998865433 58887632111000                  011112  2223456699999999999


Q ss_pred             eEEEEEEEcC
Q psy3823         295 GTLLCWARNE  304 (365)
Q Consensus       295 G~Y~C~a~n~  304 (365)
                      +.|.|.....
T Consensus        91 AvYyCAr~~~  100 (130)
T d1rhhb1          91 AVYYCARDFG  100 (130)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEeecC
Confidence            9999977643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.43  E-value=0.0058  Score=42.89  Aligned_cols=68  Identities=9%  Similarity=0.119  Sum_probs=43.1

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCC--CCCC------CC----------CCceeEe--eCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNN--SDTA------PR----------PLTSYSI--QDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~--~~~~------~~----------~~~~~~~--~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+++.|+|.+.|+.... .+.|.+..  +...      ..          ..+..+.  ...+...|.|++++.+|.
T Consensus        11 vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eDT   90 (126)
T d1rjca1          11 VQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPEDT   90 (126)
T ss_dssp             ECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcccC
Confidence            78999999999998865443 57887642  1110      00          0112222  223445699999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      +.|.|....
T Consensus        91 AvYYCAr~~   99 (126)
T d1rjca1          91 AMYYCAADT   99 (126)
T ss_dssp             EEEEEEECC
T ss_pred             ceeEEEeec
Confidence            999997654

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.43  E-value=0.017  Score=39.74  Aligned_cols=68  Identities=6%  Similarity=0.001  Sum_probs=44.8

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCC-----------------CCCCceeE--eeCCCEEEEEEcCCCcccCe
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTA-----------------PRPLTSYS--IQDGSTSVARYTPTSELEYG  295 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~-----------------~~~~~~~~--~~~~~~s~l~i~~v~~~d~G  295 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|.+......                 ....+..+  ....+...|.|++++.+|.+
T Consensus        12 vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDtA   91 (118)
T d1lo4h1          12 VKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDTA   91 (118)
T ss_dssp             ECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcce
Confidence            78899999999999875443 588886421100                 00011112  22344567999999999999


Q ss_pred             EEEEEEEc
Q psy3823         296 TLLCWARN  303 (365)
Q Consensus       296 ~Y~C~a~n  303 (365)
                      .|.|....
T Consensus        92 ~YyCAr~~   99 (118)
T d1lo4h1          92 IYYCARGT   99 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEecccC
Confidence            99997543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.42  E-value=0.015  Score=40.06  Aligned_cols=69  Identities=7%  Similarity=-0.013  Sum_probs=43.6

Q ss_pred             EEEEecCCcEEEEEEeCCC--CCcceEEEEeCCC--c-----CCCCC-----------CceeEe-cCCeEEEEEEccCCC
Q psy3823          21 IYGALRNEQVLVSCTVDAN--PQAQYFTWAFNNS--G-----TAPRP-----------LTSYSI-QDGSTSVARYTPTSE   79 (365)
Q Consensus        21 ~~~v~~G~~~~l~C~~~~~--p~~~~v~W~~~~~--~-----~l~~~-----------~~~~~~-~~~~~~~l~i~~~~~   79 (365)
                      .-.+..|+++.|.|++.+.  ... .+.|+|...  .     .+...           +..... ...+.-.|.|.+++.
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~~~~~y-~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~   87 (118)
T d1lo4h1           9 GDLVKPGGSLTLSCEASGFTLRTY-GMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS   87 (118)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTS-EEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCcccCC-CcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC
Confidence            3457889999999995443  334 888988532  1     01111           011111 223445799999999


Q ss_pred             CCCeEEEEEEE
Q psy3823          80 LEYGTLLCWAR   90 (365)
Q Consensus        80 ~d~G~Y~C~a~   90 (365)
                      +|++.|.|...
T Consensus        88 eDtA~YyCAr~   98 (118)
T d1lo4h1          88 EDTAIYYCARG   98 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeccc
Confidence            99999999744

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0023  Score=41.15  Aligned_cols=62  Identities=18%  Similarity=0.363  Sum_probs=39.2

Q ss_pred             ecCceEEEEEEEeeeCCCceeEEEeCCCCCCCCCCceeEeeCCCEEEEEEcCCCc-ccCeEEEEEEEc
Q psy3823         237 LRNEQVLVSCTVDANPQAQYFTWAFNNSDTAPRPLTSYSIQDGSTSVARYTPTSE-LEYGTLLCWARN  303 (365)
Q Consensus       237 ~~g~~~~l~C~~~~~p~~~~~~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~v~~-~d~G~Y~C~a~n  303 (365)
                      ..|.+|+|+|..  .+... +.|.+++.......+...+..+.  ..|.+.+.++ +++|.|.|.+..
T Consensus         8 ISGTtV~LTCP~--~~~~~-i~W~~n~~~~~~~~~~~~~~~~~--~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSE-ILWQHNDKNIGGDEDDKNIGSDE--DHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EETTEEEEECSS--CTTSC-EEEEETTEEESSSCSCTTEEEET--TEEEETTCCHHHHCEEEEEEETT
T ss_pred             EeCCEEEEECCC--CCCCc-eeeeeccccccCCCccccccccc--ceEEecccCccccCceEEEEcCC
Confidence            358999999963  34465 99999875322221111111111  2477888776 789999999953

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.42  E-value=0.0078  Score=42.18  Aligned_cols=65  Identities=12%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             EEecCCcEEEEEEeCCCCC---cceEEEEeCCCc-------------------CCCCCCceeEecCCeEEEEEEccCCCC
Q psy3823          23 GALRNEQVLVSCTVDANPQ---AQYFTWAFNNSG-------------------TAPRPLTSYSIQDGSTSVARYTPTSEL   80 (365)
Q Consensus        23 ~v~~G~~~~l~C~~~~~p~---~~~v~W~~~~~~-------------------~l~~~~~~~~~~~~~~~~l~i~~~~~~   80 (365)
                      .++.|+++.|.|++.+..-   . .+.|+|....                   .+...-........+.-.|.|.+++.+
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y-~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGY-YWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSS-EEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEecccccCCC-cceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc


Q ss_pred             CCeEEEEE
Q psy3823          81 EYGTLLCW   88 (365)
Q Consensus        81 d~G~Y~C~   88 (365)
                      |++.|.|.
T Consensus        90 DtAvYyCA   97 (127)
T d3cx5j1          90 DTATYYCA   97 (127)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEee

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.41  E-value=0.007  Score=42.45  Aligned_cols=68  Identities=12%  Similarity=0.217  Sum_probs=44.1

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCC--------CC----------CCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTA--------PR----------PLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~--------~~----------~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.-.. .+.|.+......        ..          ..+..+  ....+...|.|++++.+|+
T Consensus        12 ~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eDt   91 (125)
T d1rihh1          12 AKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSEDS   91 (125)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcccc
Confidence            78999999999998864332 477876321100        00          011112  2234456799999999999


Q ss_pred             eEEEEEEEc
Q psy3823         295 GTLLCWARN  303 (365)
Q Consensus       295 G~Y~C~a~n  303 (365)
                      +.|.|-...
T Consensus        92 AvYYCAR~~  100 (125)
T d1rihh1          92 AVYYCARES  100 (125)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEeeeC
Confidence            999997654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.41  E-value=0.0065  Score=42.28  Aligned_cols=69  Identities=10%  Similarity=0.122  Sum_probs=45.1

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeC--CCCCC------------------CCCCceeE--eeCCCEEEEEEcCCCcc
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFN--NSDTA------------------PRPLTSYS--IQDGSTSVARYTPTSEL  292 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~--~~~~~------------------~~~~~~~~--~~~~~~s~l~i~~v~~~  292 (365)
                      +.+|+.+.|+|.+.|+.... .+.|.+.  |+...                  ....+..+  ....+...|.+++++.+
T Consensus        12 vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   91 (122)
T d1q9rb1          12 VQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAE   91 (122)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeeccC
Confidence            78899999999998864333 4888863  21110                  00011112  22344566999999999


Q ss_pred             cCeEEEEEEEcC
Q psy3823         293 EYGTLLCWARNE  304 (365)
Q Consensus       293 d~G~Y~C~a~n~  304 (365)
                      |.+.|.|.....
T Consensus        92 DTAvYYCar~~~  103 (122)
T d1q9rb1          92 DSATYYCARDHD  103 (122)
T ss_dssp             GCEEEEEEECCC
T ss_pred             cceEEEEEecCC
Confidence            999999987543

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.38  E-value=0.00065  Score=47.42  Aligned_cols=67  Identities=13%  Similarity=0.166  Sum_probs=40.4

Q ss_pred             cCCcEEEEEE-eCCCCCcceEEEEeCCCcCCCCCCceeEecCCeEE---EEEEccCCCCCCeEEEEEEEeCC
Q psy3823          26 RNEQVLVSCT-VDANPQAQYFTWAFNNSGTAPRPLTSYSIQDGSTS---VARYTPTSELEYGTLLCWARNEQ   93 (365)
Q Consensus        26 ~G~~~~l~C~-~~~~p~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~a~~~~   93 (365)
                      .++.++|.|. .+..|....|+|.+++.. ...........+++.+   .|.+....+.....|+|.|.+..
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~-~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPS-DYKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTT-TEEEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCC-CcEEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            3678899999 555677669999888754 2111111122344333   34444444334667999999864

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.38  E-value=0.015  Score=40.56  Aligned_cols=67  Identities=9%  Similarity=0.138  Sum_probs=43.7

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeCCCCCC------------------CCCCceeE--eeCCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFNNSDTA------------------PRPLTSYS--IQDGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~~~~~~------------------~~~~~~~~--~~~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.... .+.|.+......                  ....+..+  ....+...|.+++++.+|.
T Consensus        12 ~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~eDT   91 (124)
T d2b1hh1          12 KKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPSDT   91 (124)
T ss_dssp             EETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccccc
Confidence            78999999999999865433 478876321100                  00111112  2234456799999999999


Q ss_pred             eEEEEEEE
Q psy3823         295 GTLLCWAR  302 (365)
Q Consensus       295 G~Y~C~a~  302 (365)
                      +.|.|...
T Consensus        92 A~YYCAR~   99 (124)
T d2b1hh1          92 ALYYCARL   99 (124)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99999543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.38  E-value=0.0074  Score=42.46  Aligned_cols=70  Identities=13%  Similarity=0.123  Sum_probs=44.0

Q ss_pred             eEEEEecCCcEEEEEEeCCCC--CcceEEEEeCC--CcC-----CC-CCC----------ce-eEe-cCCeEEEEEEccC
Q psy3823          20 RIYGALRNEQVLVSCTVDANP--QAQYFTWAFNN--SGT-----AP-RPL----------TS-YSI-QDGSTSVARYTPT   77 (365)
Q Consensus        20 ~~~~v~~G~~~~l~C~~~~~p--~~~~v~W~~~~--~~~-----l~-~~~----------~~-~~~-~~~~~~~l~i~~~   77 (365)
                      ..-.++.|++++|.|++.+..  .. .+.|+|..  +.+     +. ...          +. ... ...+.-.|.+.++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y-~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL   86 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNY-AINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSL   86 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGC-CEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCC-ceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeec
Confidence            345578999999999965442  33 78998842  210     11 111          00 111 2233446899999


Q ss_pred             CCCCCeEEEEEEE
Q psy3823          78 SELEYGTLLCWAR   90 (365)
Q Consensus        78 ~~~d~G~Y~C~a~   90 (365)
                      +.+|++.|.|...
T Consensus        87 ~~eDtA~YYCAr~   99 (130)
T d1rzga1          87 RSEDTAVFYCASP   99 (130)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CCCccEEEEEEEe
Confidence            9999999999743

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.38  E-value=0.0074  Score=42.53  Aligned_cols=69  Identities=10%  Similarity=0.100  Sum_probs=44.7

Q ss_pred             eecCceEEEEEEEeeeCCCc-eeEEEeC--CCCCC------CC----------CCceeEee--CCCEEEEEEcCCCcccC
Q psy3823         236 ALRNEQVLVSCTVDANPQAQ-YFTWAFN--NSDTA------PR----------PLTSYSIQ--DGSTSVARYTPTSELEY  294 (365)
Q Consensus       236 ~~~g~~~~l~C~~~~~p~~~-~~~W~~~--~~~~~------~~----------~~~~~~~~--~~~~s~l~i~~v~~~d~  294 (365)
                      +.+|+.+.|+|.+.|+.... .+.|.+.  |+...      ..          ..+..+..  ..+...|.|.+++.+|.
T Consensus        12 vkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eDT   91 (135)
T d1ieha_          12 VQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSEDT   91 (135)
T ss_dssp             ECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSSC
T ss_pred             ECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcccc
Confidence            78999999999999865333 4888763  21110      00          11122222  23445699999999999


Q ss_pred             eEEEEEEEcC
Q psy3823         295 GTLLCWARNE  304 (365)
Q Consensus       295 G~Y~C~a~n~  304 (365)
                      +.|.|.....
T Consensus        92 AvYYCAr~~~  101 (135)
T d1ieha_          92 AVYYCAKYSG  101 (135)
T ss_dssp             EEEEEEEBSS
T ss_pred             eeeEEEEecC
Confidence            9999976543