Psyllid ID: psy382

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
MSAQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGKSGGGRGRKGKRGRERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADEILEDDDS
ccccEEEEEEEcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHccccccccccccccccccccccEEEEccccccccccccHHHHHcccccccccccccccccccccccEEEcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEccccccEEEcccccccccccccccccccEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHccccccEEccccccccHHHHHHHHccccccHHHHHHHHHHHcccccEEEEcccccEEEEccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccc
ccccEEEEEEEEcccccHcccHHHHHHHHHcccccccccccccccccccEEEEcccccccccEEEEEEcccccEEEEEccccccccccccccEEccEEcccHHHEcccEEEccccEEEEEcHHHHHHHHHHcccccccccHHHHHHHHHHHHHEEEEEccccccccccEEEEEEcccccccccccccccccHHHcccHHHHccccccccHEEEEcccccccEEEEccccccccccccccccHHHHccccccHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHEEEEcccccEEEEEEcccccHHHHHHHHHHHHHHEEEcccccccccHHHHHHcccccccEcccccccccEEcHcHHHHHHccHHHHHHHHccHHHccEccccccccEEEEEEEEccccccHHHHHHHHHHHccccEEEEccccccEEEEEcccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccc
MSAQRECLSLHIGQAGIQMGDSCWQLFLLEhglspigeqlqpirddkVSSFFtemnatkftpraimvdleptvtgksgggrgrkgkrgrerkistsvvepynsiltthstlnnadctfivdneALYEICStklgierpayqnlnHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEhglspigeqlqpirddkVSSFFtemnatkftpraimvdleptvtgsgltsllsdqlqhqrpnlfnpdqliagkedaanNFARGRMTCGKTIIDKLTNTIRRIVENCdtfngflssglsptlfrnrevtcvierpayqnlnhLTSQVMSSITASLRFEGalnvdlsefqtnlvpfprihfplaafspistcTKTIHENLGvaemtaecfhpgnqlvkcnvtnhKYMACCllyrgdvtpQEVNYALNkvktkniqfvdwcptgfkvginkqkpsviaggdmapsnkLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLsegmeeddfIDARDNLLQLELDYIDVATDtadeileddds
MSAQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNatkftpraimvdleptvtgksgggrgrkgkrgrerkistsvvepynsiltthstlnnadCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNatkftpraimVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGflssglsptlFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTAdeileddds
MSAQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTgksgggrgrkgkrgrerkISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADEILEDDDS
******CLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDL***************************VVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLL***********F**DQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT**********
**AQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGKSGGGRGRKGKRGRERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVA*************
MSAQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVT*******************STSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADEILEDDDS
**AQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGKSGGGRGRKGKRGRERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVAT************
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iiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSAQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGKSGGGRGRKGKRGRERKISTSVVEPYNSILTTHSTLNNADCTFIVDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLSSGLSPTLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKNIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADEILEDDDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query536 2.2.26 [Sep-21-2011]
Q9BQE3449 Tubulin alpha-1C chain OS yes N/A 0.690 0.824 0.450 1e-108
P09644448 Tubulin alpha-5 chain OS= yes N/A 0.686 0.821 0.450 1e-108
Q3ZCJ7449 Tubulin alpha-1C chain OS yes N/A 0.703 0.839 0.443 1e-108
P68373449 Tubulin alpha-1C chain OS yes N/A 0.690 0.824 0.448 1e-108
P68365449 Tubulin alpha-1C chain OS yes N/A 0.690 0.824 0.448 1e-108
Q6AYZ1449 Tubulin alpha-1C chain OS yes N/A 0.690 0.824 0.448 1e-108
Q5XIF6448 Tubulin alpha-4A chain OS yes N/A 0.694 0.830 0.447 1e-108
P68368448 Tubulin alpha-4A chain OS yes N/A 0.694 0.830 0.447 1e-108
P68367448 Tubulin alpha-4A chain OS N/A N/A 0.694 0.830 0.447 1e-108
P68366448 Tubulin alpha-4A chain OS yes N/A 0.694 0.830 0.447 1e-108
>sp|Q9BQE3|TBA1C_HUMAN Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1 Back     alignment and function desciption
 Score =  394 bits (1011), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/448 (45%), Positives = 268/448 (59%), Gaps = 78/448 (17%)

Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATKF 206
           REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+          DD  ++FF+E  A K 
Sbjct: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61

Query: 207 TPRAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKT 266
            PRA+ VDLEPTV     T             LF+P+QLI GKEDAANN+ARG  T GK 
Sbjct: 62  VPRAVFVDLEPTVIDEVRTGTYR--------QLFHPEQLITGKEDAANNYARGHYTIGKE 113

Query: 267 IIDKLTNTIRRIVENCDTFNGFL---------------------------SSGLSPTLFR 299
           IID + + IR++ + C    GFL                            S L  +++ 
Sbjct: 114 IIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP 173

Query: 300 NREVTCVIERP------AYQNLNHLTSQVM----------------------------SS 325
             +V+  +  P       +  L H     M                            S 
Sbjct: 174 APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQ 233

Query: 326 ITASL----RFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTA 381
           I +S+    RF+GALNVDL+EFQTNLVP+PRIHFPLA ++P+ +  K  HE L VAE+T 
Sbjct: 234 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITN 293

Query: 382 ECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK-NIQFVDWCPTGFKV 440
            CF P NQ+VKC+  + KYMACCLLYRGDV P++VN A+  +KTK  IQFVDWCPTGFKV
Sbjct: 294 ACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV 353

Query: 441 GINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGM 500
           GIN Q P+V+ GGD+A   + V ML+NTTA+AEAW++L+ KF+LM+ KRAFVHWY+ EGM
Sbjct: 354 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGM 413

Query: 501 EEDDFIDARDNLLQLELDYIDVATDTAD 528
           EE +F +AR+++  LE DY +V  D+AD
Sbjct: 414 EEGEFSEAREDMAALEKDYEEVGADSAD 441
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Homo sapiens (taxid: 9606)
>sp|P09644|TBA5_CHICK Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1 Back     alignment and function description
>sp|Q3ZCJ7|TBA1C_BOVIN Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1 Back     alignment and function description
>sp|P68373|TBA1C_MOUSE Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1 Back     alignment and function description
>sp|P68365|TBA1C_CRIGR Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1 Back     alignment and function description
>sp|Q6AYZ1|TBA1C_RAT Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1 Back     alignment and function description
>sp|Q5XIF6|TBA4A_RAT Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1 Back     alignment and function description
>sp|P68368|TBA4A_MOUSE Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1 Back     alignment and function description
>sp|P68367|TBA4A_MACFA Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1 Back     alignment and function description
>sp|P68366|TBA4A_HUMAN Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
432867231 859 PREDICTED: tubulin alpha-1C chain-like [ 0.886 0.552 0.472 1e-138
449506998556 PREDICTED: tubulin alpha-4A chain-like i 0.880 0.848 0.419 1e-124
410964336 648 PREDICTED: tubulin alpha-1C chain [Felis 0.673 0.557 0.540 1e-118
72057634463 PREDICTED: tubulin alpha chain-like isof 0.708 0.820 0.475 1e-117
72057626450 PREDICTED: tubulin alpha chain-like isof 0.703 0.837 0.479 1e-117
431901373 948 Protein LMBR1L [Pteropus alecto] 0.695 0.393 0.515 1e-114
341874664357 CBN-TBA-9 protein [Caenorhabditis brenne 0.647 0.971 0.518 1e-113
47229077419 unnamed protein product [Tetraodon nigro 0.680 0.871 0.504 1e-113
444515376379 Tubulin alpha-1C chain, partial [Tupaia 0.671 0.949 0.524 1e-113
47218560429 unnamed protein product [Tetraodon nigro 0.682 0.853 0.479 1e-111
>gi|432867231|ref|XP_004071090.1| PREDICTED: tubulin alpha-1C chain-like [Oryzias latipes] Back     alignment and taxonomy information
 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/535 (47%), Positives = 339/535 (63%), Gaps = 60/535 (11%)

Query: 4   QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPIR----DDKVSSFFTEMNATK 59
           +REC+S+H+GQAG+Q+G++CW+L+ LEHG+ P G+          DD  ++FF+E  A K
Sbjct: 369 ERECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 428

Query: 60  FTPRAIMVDLEPTVTGKSGGGRGRKGKRGRERKISTSVVEPYNSILTTHSTLNNADCTFI 119
             PRA+ VDLEPTV  +   G  R+       ++ T   +  N+    H T+       +
Sbjct: 429 HVPRAVFVDLEPTVIDEVRTGTYRQ--LFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 486

Query: 120 VDNEALYEICSTKLGIERPAYQNLNHLTSQQRECLSLHIGQAGIQMGDSCWQLFLLEHGL 179
           +D                           + REC+S+H+GQAG+Q+G++CW+L+ LEHG+
Sbjct: 487 LDR------------------------IRKLRECISVHVGQAGVQIGNACWELYCLEHGI 522

Query: 180 SPIGEQLQPIR----DDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSLLSDQLQHQ 235
            P G+          DD  ++FF+E  A K  PRA+ VDLEPTV     T          
Sbjct: 523 QPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYR------ 576

Query: 236 RPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLSSGLSP 295
              LF+P+QLI GKEDAANN+ARG  T GK IID + + IR++ + C        +GL  
Sbjct: 577 --QLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQC--------TGLQX 626

Query: 296 TLFRNREVTCVIERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHF 355
                      IERP Y NLN L SQ++SSITASLRF+GALNVDL+EFQTNLVP+PRIHF
Sbjct: 627 X---------DIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHF 677

Query: 356 PLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQE 415
           PLA ++P+ +  K  HE L VAE+T  CF P NQLVKC+  + KYMACCLLYRGDV P++
Sbjct: 678 PLATYAPVISAEKAYHEQLTVAEITNACFEPANQLVKCDPRHGKYMACCLLYRGDVVPKD 737

Query: 416 VNYALNKVKTK-NIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEA 474
           VN A+  +KTK +IQFVDWCPTGFKVGIN Q P+V+ GGD+A   + V ML+NTTA+AEA
Sbjct: 738 VNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEA 797

Query: 475 WSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADE 529
           W++L+ KF+LM+ KRAFVHWY+ EGMEE +F +AR+++  LE DY +V  D+  E
Sbjct: 798 WARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSLGE 852

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota
>gi|449506998|ref|XP_002195802.2| PREDICTED: tubulin alpha-4A chain-like isoform 2 [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|410964336|ref|XP_003988711.1| PREDICTED: tubulin alpha-1C chain [Felis catus] Back     alignment and taxonomy information
>gi|72057634|ref|XP_802011.1| PREDICTED: tubulin alpha chain-like isoform 5 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|72057626|ref|XP_780117.1| PREDICTED: tubulin alpha chain-like isoform 1 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|431901373|gb|ELK08399.1| Protein LMBR1L [Pteropus alecto] Back     alignment and taxonomy information
>gi|341874664|gb|EGT30599.1| CBN-TBA-9 protein [Caenorhabditis brenneri] Back     alignment and taxonomy information
>gi|47229077|emb|CAG03829.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information
>gi|444515376|gb|ELV10875.1| Tubulin alpha-1C chain, partial [Tupaia chinensis] Back     alignment and taxonomy information
>gi|47218560|emb|CAG10259.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
ZFIN|ZDB-GENE-040426-1646449 tuba8l2 "tubulin, alpha 8 like 0.427 0.510 0.617 1.9e-120
ZFIN|ZDB-GENE-030131-5588449 tuba4l "tubulin, alpha 4 like" 0.427 0.510 0.621 3.1e-120
UNIPROTKB|P09644448 P09644 "Tubulin alpha-5 chain" 0.427 0.511 0.621 6.5e-120
UNIPROTKB|F1MNF8449 LOC100141266 "Uncharacterized 0.427 0.510 0.626 1.7e-119
UNIPROTKB|F5H5D3519 TUBA1C "Tubulin alpha-1C chain 0.414 0.427 0.641 2.2e-119
FB|FBgn0003886449 alphaTub85E "alpha-Tubulin at 0.427 0.510 0.621 2.8e-119
UNIPROTKB|Q3ZCJ7449 TUBA1C "Tubulin alpha-1C chain 0.427 0.510 0.626 2.8e-119
UNIPROTKB|P08070446 P08070 "Tubulin alpha-2 chain" 0.429 0.515 0.623 2.8e-119
UNIPROTKB|F1NMP3446 TUBA8 "Uncharacterized protein 0.429 0.515 0.623 2.8e-119
UNIPROTKB|Q9BQE3449 TUBA1C "Tubulin alpha-1C chain 0.414 0.494 0.641 3.5e-119
ZFIN|ZDB-GENE-040426-1646 tuba8l2 "tubulin, alpha 8 like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 783 (280.7 bits), Expect = 1.9e-120, Sum P(3) = 1.9e-120
 Identities = 142/230 (61%), Positives = 183/230 (79%)

Query:   307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
             IERP+Y NLN   SQ++SSITASLRF+GALNVDL+EFQTNLVP+PRIHFPLA ++P+ + 
Sbjct:   219 IERPSYTNLNRFISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278

Query:   367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
              K  HE L VAE+T  CF P NQ+VKC+  + KYMACCLLYRGDV P++VN A+  +KTK
Sbjct:   279 EKAYHEQLSVAEITNSCFEPSNQMVKCDPRHGKYMACCLLYRGDVVPKDVNVAIAAIKTK 338

Query:   427 -NIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
              +IQFVDWCPTGFKVGIN Q P+V+ GGD+A   + V ML+NTTA+AEAW++L+ KF+LM
Sbjct:   339 RSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398

Query:   486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADEILEDDD 535
             + KRAFVHWY+ EGMEE +F +AR+++  LE DY +V  D+ +E  E ++
Sbjct:   399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGIDSFEEDEEGEE 448
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005874 "microtubule" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005856 "cytoskeleton" evidence=IEA
ZFIN|ZDB-GENE-030131-5588 tuba4l "tubulin, alpha 4 like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P09644 P09644 "Tubulin alpha-5 chain" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNF8 LOC100141266 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F5H5D3 TUBA1C "Tubulin alpha-1C chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0003886 alphaTub85E "alpha-Tubulin at 85E" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCJ7 TUBA1C "Tubulin alpha-1C chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P08070 P08070 "Tubulin alpha-2 chain" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMP3 TUBA8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BQE3 TUBA1C "Tubulin alpha-1C chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P68365TBA1C_CRIGRNo assigned EC number0.44860.69020.8240yesN/A
P68366TBA4A_HUMANNo assigned EC number0.44730.69400.8303yesN/A
P09644TBA5_CHICKNo assigned EC number0.45060.68650.8214yesN/A
B9DHQ0TBA5_ARATHNo assigned EC number0.42530.67910.8088yesN/A
P02552TBA1_CHICKNo assigned EC number0.46510.61190.7961yesN/A
Q56WH1TBA3_ARATHNo assigned EC number0.42530.67910.8088yesN/A
Q28IX8TBA_XENTRNo assigned EC number0.44390.68650.8195yesN/A
Q3ZCJ7TBA1C_BOVINNo assigned EC number0.44390.70330.8396yesN/A
Q5XIF6TBA4A_RATNo assigned EC number0.44730.69400.8303yesN/A
P28752TBA1_ORYSJNo assigned EC number0.43510.69960.8333yesN/A
Q6AYZ1TBA1C_RATNo assigned EC number0.44860.69020.8240yesN/A
P68373TBA1C_MOUSENo assigned EC number0.44860.69020.8240yesN/A
P68368TBA4A_MOUSENo assigned EC number0.44730.69400.8303yesN/A
P81948TBA4A_BOVINNo assigned EC number0.44730.69400.8303yesN/A
Q9BQE3TBA1C_HUMANNo assigned EC number0.45080.69020.8240yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 1e-166
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-155
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 1e-130
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 2e-96
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 4e-85
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 2e-66
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 5e-62
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-51
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 5e-50
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 2e-49
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 4e-47
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 2e-45
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 3e-41
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-38
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 2e-31
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 8e-28
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 3e-25
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 7e-23
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 9e-23
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-22
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 3e-22
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 5e-22
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 8e-22
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 1e-21
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 3e-21
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-20
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 2e-18
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 3e-18
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 2e-17
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 4e-17
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 1e-16
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 2e-16
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 4e-15
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 9e-15
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 2e-14
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 4e-14
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-13
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 6e-13
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-12
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 6e-12
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 7e-12
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 5e-11
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 7e-10
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 2e-09
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 5e-09
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 9e-09
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 4e-08
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 2e-07
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 1e-06
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 5e-06
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 2e-04
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 4e-04
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 5e-04
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 8e-04
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information 
 Score =  478 bits (1232), Expect = e-166
 Identities = 208/460 (45%), Positives = 282/460 (61%), Gaps = 88/460 (19%)

Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG----EQLQPIRDDKVSSFFTEMNATKF 206
           RE +S+HIGQAGIQ+G++CW+LF LEHG+ P G    ++   + DD  ++FF+E  A K 
Sbjct: 2   REVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKH 61

Query: 207 TPRAIMVDLEPTV-----TGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRM 261
            PR + +DLEPTV     TG+             R  LF+P+QLI+GKEDAANNFARG  
Sbjct: 62  VPRCVFLDLEPTVIDEVRTGT------------YR-QLFHPEQLISGKEDAANNFARGHY 108

Query: 262 TCGKTIIDKLTNTIRRIVENCDTFNGFL---------SSGL------------------- 293
           T GK I+D   + IR++ +NC    GFL          SGL                   
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLG 168

Query: 294 -----SP-----------------TLFRNREVTCVIERPA---------------YQNLN 316
                SP                 +L  + +V  +++  A               Y NLN
Sbjct: 169 FTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLN 228

Query: 317 HLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGV 376
            L +QV+SS+TASLRF+GALNVDL+EFQTNLVP+PRIHF L++++PI +  K  HE L V
Sbjct: 229 RLIAQVISSLTASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSV 288

Query: 377 AEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKT-KNIQFVDWCP 435
           AE+T   F P N + KC+  + KYMACCL+YRGDV P++VN A+  +KT + IQFVDWCP
Sbjct: 289 AEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCP 348

Query: 436 TGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWY 495
           TGFK GIN Q P+V+ GGD+A   + V M++N+TA+AE +S+++ KF+LM+ KRAFVHWY
Sbjct: 349 TGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWY 408

Query: 496 LSEGMEEDDFIDARDNLLQLELDYIDVATDTADEILEDDD 535
           + EGMEE +F +AR++L  LE DY +V  ++ADE  E+D 
Sbjct: 409 VGEGMEEGEFSEAREDLAALEKDYEEVGAESADEEGEEDV 448

Length = 448
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 536
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
KOG1374|consensus448 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
KOG1376|consensus407 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1375|consensus369 100.0
COG5023443 Tubulin [Cytoskeleton] 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
KOG1374|consensus448 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 99.98
cd02187425 beta_tubulin The tubulin superfamily includes five 99.98
KOG1376|consensus407 99.97
cd06060493 misato Human Misato shows similarity with Tubulin/ 99.97
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 99.96
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 99.94
cd02190379 epsilon_tubulin The tubulin superfamily includes f 99.91
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.91
cd06059382 Tubulin The tubulin superfamily includes five dist 99.84
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 99.76
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.73
KOG2530|consensus483 99.69
KOG1375|consensus369 99.53
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.37
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.19
cd06060493 misato Human Misato shows similarity with Tubulin/ 99.18
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 98.98
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 98.84
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 98.79
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 98.78
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 98.69
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 98.63
PRK13018378 cell division protein FtsZ; Provisional 98.58
PF14881180 Tubulin_3: Tubulin domain 98.58
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 98.45
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.42
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 98.35
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 98.21
PRK13018378 cell division protein FtsZ; Provisional 98.07
KOG2530|consensus483 98.02
PRK09330384 cell division protein FtsZ; Validated 97.71
PRK09330384 cell division protein FtsZ; Validated 97.56
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-109  Score=816.60  Aligned_cols=370  Identities=47%  Similarity=0.837  Sum_probs=353.5

Q ss_pred             ccccceecccccccccchhhhhhhhhhcCCCCCCCcccC--CcCCCCCccccccCCCCccccEEEEeCCccccccccccc
Q psy382          150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP--IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLTSL  227 (536)
Q Consensus       150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~--~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~~~  227 (536)
                      |||||+||+||||||||++||+++|+||||.++|...+.  ...+..++||+|++.|||+||||+|||||.||++++++ 
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g-   79 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNG-   79 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccC-
Confidence            899999999999999999999999999999999986543  45688999999999999999999999999999999999 


Q ss_pred             cccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHHHH
Q psy382          228 LSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPTLF  298 (536)
Q Consensus       228 ~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~ll  298 (536)
                             +|+.+|+|+|++++|+|||||||+|||+.|+++.|.++|+|||++|.||+||||++         |||||+||
T Consensus        80 -------~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLL  152 (443)
T COG5023          80 -------PYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLL  152 (443)
T ss_pred             -------ccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHH
Confidence                   99999999999999999999999999999999999999999999999999999999         99999999


Q ss_pred             -----------------------------------------Hhh--------------h-hhcCCCCCChhhHHHHHHHH
Q psy382          299 -----------------------------------------RNR--------------E-VTCVIERPAYQNLNHLTSQV  322 (536)
Q Consensus       299 -----------------------------------------E~~--------------~-~~l~i~~~s~~~lN~lIA~~  322 (536)
                                                               ||+              | ++|++.+|+|.|+|++||++
T Consensus       153 erl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~V  232 (443)
T COG5023         153 ERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTV  232 (443)
T ss_pred             HHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence                                                     222              1 79999999999999999999


Q ss_pred             hhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCceee
Q psy382          323 MSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMA  402 (536)
Q Consensus       323 lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~ls  402 (536)
                      |+++|+++||||++|+||++|.+||||+|++||+.++|+|++...+..+++.|+.+++++||+++|+|++|+|++++|++
T Consensus       233 mSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~  312 (443)
T COG5023         233 MSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMA  312 (443)
T ss_pred             HHhhhheeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHHHH
Q psy382          403 CCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKK  481 (536)
Q Consensus       403 ~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~  481 (536)
                      +++++||++.++|+.+++.+++.|+ ++||+|+|+++|+++|+.+|.     ..++.++++|+|+|+|+|...|+++.+|
T Consensus       313 ~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~-----~~~~~~~s~~~lsNtTsi~e~fkr~~~q  387 (443)
T COG5023         313 VCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPS-----EPAEVDVSGCMLSNTTSIAEAFKRIDDQ  387 (443)
T ss_pred             hhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCc-----ccccceeeeEeecCcHHHHHHHHHhhhH
Confidence            9999999999999999999999999 999999999999999998883     3445788999999999999999999999


Q ss_pred             HHHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHhhccccccccC
Q psy382          482 FELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTADEILE  532 (536)
Q Consensus       482 f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~~~~  532 (536)
                      |++||+||||||||+++|||++||.||++.+++|+++|++++++..++|+.
T Consensus       388 Fd~mf~krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~  438 (443)
T COG5023         388 FDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE  438 (443)
T ss_pred             HHHHHHhhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence            999999999999999999999999999999999999999998888765543

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 3e-86
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 4e-86
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 6e-86
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 8e-86
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-85
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 3e-85
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 3e-85
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 2e-84
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 3e-84
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 3e-84
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 3e-84
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 5e-76
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 5e-43
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 2e-38
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 3e-38
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 7e-38
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 9e-38
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-37
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-37
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 2e-37
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 2e-37
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 2e-37
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 3e-37
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 2e-30
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 2e-30
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 2e-30
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure 
Iteration: 1

 Score =  315 bits (808), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 141/221 (63%), Positives = 178/221 (80%), Gaps = 1/221 (0%)
Query: 307 IERPAYQNLNHLTSQVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTC 366
           IERP Y NLN L SQ++SSITASLRF+GALNVDL+EFQTNLVP+PRIHFPLA ++P+ + 
Sbjct: 219 IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 367 TKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTK 426
            K  HE L VAE+T  CF P NQ+VKC+  + KYMACCLLYRGDV P++VN A+  +KTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 427 -NIQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELM 485
            +IQFVDWCPTGFKVGIN Q P+V+ GGD+A   + V ML+NTTA+AEAW++L+ KF+LM
Sbjct: 339 RSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 486 FEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDT 526
           + KRAFVHWY+ EGMEE +F +AR+++  LE DY +V  D+
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 439
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 1e-154
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 2e-23
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 3e-21
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 1e-150
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 6e-24
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 2e-20
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 1e-147
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 4e-24
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 1e-19
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-107
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 2e-45
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-22
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 2e-20
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-100
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 4e-40
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 6e-27
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
 Score =  447 bits (1151), Expect = e-154
 Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 84/453 (18%)

Query: 151 RECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIG--EQLQPIRDDKVSSFFTEMNATKFTP 208
           RE + +  GQ G Q+G   W++   EHG+ P G       ++ ++++ ++ E    K+ P
Sbjct: 2   REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVP 61

Query: 209 RAIMVDLEPTVTGSGLTSLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTII 268
           RAI+VDLEP    S  +             +F PD  + G+  A NN+A+G  T G  ++
Sbjct: 62  RAILVDLEPGTMDSVRSGPFG--------QIFRPDNFVFGQSGAGNNWAKGHYTEGAELV 113

Query: 269 DKLTNTIRRIVENCDTFNGFL---------SSGL------------------------SP 295
           D + + +R+  E+CD   GF           SG+                        SP
Sbjct: 114 DSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP 173

Query: 296 -----------------TLFRNREVTCVIERPA---------------YQNLNHLTSQVM 323
                             L  N + T  I+  A               Y +LNHL S  M
Sbjct: 174 KVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATM 233

Query: 324 SSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAEC 383
           S +T  LRF G LN DL +   N+VPFPR+HF +  F+P+++     +  L V E+T + 
Sbjct: 234 SGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQM 293

Query: 384 FHPGNQLVKCNVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGI 442
           F   N +  C+  + +Y+    ++RG ++ +EV+  +  ++ KN   FV+W P   K  +
Sbjct: 294 FDSKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 353

Query: 443 NKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEE 502
               P    G  M+      T + N+TA+ E + +++++F  MF ++AF+HWY  EGM+E
Sbjct: 354 CDIPP---RGLKMS-----STFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 405

Query: 503 DDFIDARDNLLQLELDYIDVATDTADEILEDDD 535
            +F +A  N+  L  +Y      TADE  E ++
Sbjct: 406 MEFTEAESNMNDLVSEYQQYQDATADEQGEFEE 438
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 99.91
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 99.91
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.91
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 99.9
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 99.9
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 99.9
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.89
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.76
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 99.51
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 99.51
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 99.47
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 99.46
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.43
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.39
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 99.34
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.28
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.14
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 98.71
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 98.31
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 97.93
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 97.07
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 96.76
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 95.56
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=8e-104  Score=829.69  Aligned_cols=371  Identities=57%  Similarity=1.022  Sum_probs=353.5

Q ss_pred             ccccceecccccccccchhhhhhhhhhcCCCCCCCcccCC----cCCCCCccccccCCCCccccEEEEeCCccccccccc
Q psy382          150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQPI----RDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLT  225 (536)
Q Consensus       150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~~----~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~  225 (536)
                      |||||+||+||||||||.+||+++|.||+|+++|.+..+.    .++++++||+|++.|+|+||||||||||+||++|++
T Consensus         1 mrEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~~   80 (451)
T 3ryc_A            1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (451)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCCCCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHHH
T ss_pred             CceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCcCCcccccccccchhhhcccCCCCccccceeeecCCcchhheeee
Confidence            8999999999999999999999999999999999876542    367899999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHH
Q psy382          226 SLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPT  296 (536)
Q Consensus       226 ~~~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~  296 (536)
                      +        +++++|+|++++++|+|||||||+|||+.|+++.|+++|+|||++|+||+||||++         ||+||+
T Consensus        81 g--------~~~~lf~p~~~i~gk~gAgNNwA~G~yt~G~e~~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~gs~  152 (451)
T 3ryc_A           81 G--------TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSL  152 (451)
T ss_dssp             S--------TTTTTSCGGGEEECSSCCTTCHHHHHHTSHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHHHHH
T ss_pred             c--------ccccccCHHHeeeccccccCCCCeeecccchHhHHHHHHHHHHHHHcCCCccceEEEeccCCCCCccHHHH
Confidence            9        89999999999999999999999999999999999999999999999999999999         899999


Q ss_pred             HHHh-----------------------------------------h--------------h-hhcCCCCCChhhHHHHHH
Q psy382          297 LFRN-----------------------------------------R--------------E-VTCVIERPAYQNLNHLTS  320 (536)
Q Consensus       297 llE~-----------------------------------------~--------------~-~~l~i~~~s~~~lN~lIA  320 (536)
                      |+|.                                         +              | +++++.+|+|.++|++||
T Consensus       153 lle~L~~ey~kk~~~~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l~i~~p~y~~lN~lIa  232 (451)
T 3ryc_A          153 LMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIS  232 (451)
T ss_dssp             HHHHHHHHTTTCEEEEEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHHCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHhcCcceEEEEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhccCCCCCchhhHHHHH
Confidence            9821                                         1              1 678999999999999999


Q ss_pred             HHhhhcccccccCCCCCCChhhhhhcCCCCCcccccccccccccCCCcccccccCHHHHHHhhcCCCCceeeccCCCCce
Q psy382          321 QVMSSITASLRFEGALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKCNVTNHKY  400 (536)
Q Consensus       321 ~~lss~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~~f~~~n~~~~~~~~~~~~  400 (536)
                      ++|+++|+++||||++|.||.+|.+||||||++||++++|+|+++..+..++++++.+|++++|+++|+|++|+|++|+|
T Consensus       233 ~~~s~iT~slRf~G~lN~Dl~~l~tnLVP~PrlHF~~~s~aPl~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky  312 (451)
T 3ryc_A          233 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKY  312 (451)
T ss_dssp             HHHHHHHHHHHTTCSSSCSHHHHHHHHCSSSSCCCCEEEEECCCBSSSCCCCCCCHHHHHHHTTCGGGBSSCCCGGGSCE
T ss_pred             hcccccccccccCcccccCHHHHhhccCCCCceeeeccccCccccccccccccCCHHHHHHHHhccccceEecCCCCCch
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             eeeeecccCCCChHHHHHHHHhhcccc-cccccCCCCCceEEeccCCCcccCCCCCCCCcceeeeecCchHHHHHHHHHH
Q psy382          401 MACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAGGDMAPSNKLVTMLTNTTAMAEAWSKLN  479 (536)
Q Consensus       401 ls~~~~~RG~~~~~~~~~~~~~~~~~~-~~f~~W~p~~~k~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~  479 (536)
                      ||+++++||+++++++.+++.++|.++ ++|++|+|++||+++|++||.+.|++++++.++++|+|+|+|+|.++|+++.
T Consensus       313 ~a~~~~~RG~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~kv~i~~~pP~~~p~~~la~~~~s~~~lsNsTaI~~~f~rl~  392 (451)
T 3ryc_A          313 MACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLD  392 (451)
T ss_dssp             EEEEEEEEESCCHHHHHHHHHHHHHHCCCCBCTTSCEEEEEEEECSCCCCCTTSSBCCCSEEEEEEEEEGGGHHHHHHHH
T ss_pred             heehhhcccCCCHHHHHHHHHHHhhcCCcceEEEccCceeeeeeccCCccCCCccccccceeeEEecCchHHHHHHHHHH
Confidence            999999999999999999999999988 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccchhhhccCCCChhhHHHHHHHHHHHHHHHHHhhccccc
Q psy382          480 KKFELMFEKRAFVHWYLSEGMEEDDFIDARDNLLQLELDYIDVATDTAD  528 (536)
Q Consensus       480 ~~f~~m~~kkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~  528 (536)
                      +||++||+||||||||++|||||+||.||+++|++|+++|++++.++.+
T Consensus       393 ~kFd~m~~krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~  441 (451)
T 3ryc_A          393 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVE  441 (451)
T ss_dssp             HHHHHHHTTTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHhhcceeHhhhcCCccchhhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999999999999999999999999999999999999999999877654
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 536
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 8e-79
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 9e-66
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 2e-62
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 5e-43
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 4e-22
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 4e-20
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 2e-33
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 4e-21
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 2e-20
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 2e-10
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 2e-31
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 3e-22
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 8e-17
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 4e-08
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  243 bits (622), Expect = 8e-79
 Identities = 119/194 (61%), Positives = 153/194 (78%), Gaps = 1/194 (0%)

Query: 334 GALNVDLSEFQTNLVPFPRIHFPLAAFSPISTCTKTIHENLGVAEMTAECFHPGNQLVKC 393
           GALNVDL+EFQTNLVP+PR HFPLA ++P+ +  K  HE L VAE+T  CF P NQ+VKC
Sbjct: 1   GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 60

Query: 394 NVTNHKYMACCLLYRGDVTPQEVNYALNKVKTKN-IQFVDWCPTGFKVGINKQKPSVIAG 452
           +  + KYMACCLLYRGDV P++VN A+  +KTK  IQFVDWCPTGFKVGIN + P+V+ G
Sbjct: 61  DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPG 120

Query: 453 GDMAPSNKLVTMLTNTTAMAEAWSKLNKKFELMFEKRAFVHWYLSEGMEEDDFIDARDNL 512
           GD+A   + V ML+NTTA+AEAW++L+ KF+LM+ KRAFVHWY+ EGMEE +F +AR+++
Sbjct: 121 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 180

Query: 513 LQLELDYIDVATDT 526
             LE DY +V  D+
Sbjct: 181 AALEKDYEEVGVDS 194
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 93.14
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 90.08
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 89.0
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 81.17
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=8.1e-53  Score=407.99  Aligned_cols=176  Identities=50%  Similarity=0.858  Sum_probs=165.3

Q ss_pred             ccccceecccccccccchhhhhhhhhhcCCCCCCCcccC----CcCCCCCccccccCCCCccccEEEEeCCccccccccc
Q psy382          150 QRECLSLHIGQAGIQMGDSCWQLFLLEHGLSPIGEQLQP----IRDDKVSSFFTEMNATKFTPRAIMVDLEPTVTGSGLT  225 (536)
Q Consensus       150 m~e~i~l~~GqcGnqiG~~~w~~l~~e~~~~~~g~~~~~----~~~~~~~~fF~e~~~~~~~pRailiDlEp~vi~~i~~  225 (536)
                      |||||+||+||||||||.+||+++++||+|+++|....+    ..++..++||+|.++++|+||||||||||+||+++++
T Consensus         1 MrEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~   80 (245)
T d1tuba1           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (245)
T ss_dssp             CCCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSG
T ss_pred             CCcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeecc
Confidence            899999999999999999999999999999999977554    3467889999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCCCCceecCCCCccccccccccCCCchHHHHHHHHHHhhhhcCCCCCceee---------cchhHH
Q psy382          226 SLLSDQLQHQRPNLFNPDQLIAGKEDAANNFARGRMTCGKTIIDKLTNTIRRIVENCDTFNGFLS---------SGLSPT  296 (536)
Q Consensus       226 ~~~~~~~~~~~~~~f~~~n~i~~~~gsgNnwa~Gy~~~g~~~~e~i~d~IR~~vE~CD~lqGF~i---------SGlGS~  296 (536)
                      +        +++|+|++++++++++|||||||+|||.+|+++.|+++|+|||++|+||+||||++         |||||+
T Consensus        81 ~--------~~~~~f~~~~~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~  152 (245)
T d1tuba1          81 G--------TYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSL  152 (245)
T ss_dssp             G--------GCSCCCCSSSEEECCSCCCCSSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHH
T ss_pred             C--------cchhccCccccccCCCCcccchHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHH
Confidence            8        88999999999999999999999999999999999999999999999999999999         999999


Q ss_pred             HHHhh-------------------------------------------------------h-hhcCCCCCChhhHHHHHH
Q psy382          297 LFRNR-------------------------------------------------------E-VTCVIERPAYQNLNHLTS  320 (536)
Q Consensus       297 llE~~-------------------------------------------------------~-~~l~i~~~s~~~lN~lIA  320 (536)
                      |+|.+                                                       | +++++++|+|.+||++||
T Consensus       153 l~e~l~d~yp~~~~~~~~V~P~~~~~~~vvqpYNtvLsl~~L~~~sD~v~~~dN~al~~i~~~~l~i~~~s~~~lN~via  232 (245)
T d1tuba1         153 LMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIG  232 (245)
T ss_dssp             HTHHHHHHTTTSCEEEEECCCCSSCSTTTTHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHTSCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHhcccccccceEEeccccCCCcccccchhhhhhHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            99211                                                       1 778999999999999999


Q ss_pred             HHhhhcccccccC
Q psy382          321 QVMSSITASLRFE  333 (536)
Q Consensus       321 ~~lss~t~~~Rf~  333 (536)
                      ++|+++|+++||.
T Consensus       233 ~~ls~~T~~~RF~  245 (245)
T d1tuba1         233 QIVSSITASLRFD  245 (245)
T ss_dssp             HHHHHHTTTTTSS
T ss_pred             HHHHhhhhhccCC
Confidence            9999999999994
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure