Psyllid ID: psy3847

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660----

MSSDEEPVIPTCEVIQVAIVCAGYNSTRSLVTLIKSILFYRKNPLHFHLITDTVALNILQTLFSTWSVPQVEVSFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCYTELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYDGNLLRRELFGCNLTQTTLQQAELSNLNEEDPCYDLRRSKLTSLRTHLYFLEYEYEASSDGNDVTLVAQLSMDRLQMVEINPNNVDEYEASSDGNDVTLVAQLSMDRLQMVEMLFKHWEGPISLTLYMSDAEAQQFLSYAGNSEALRSRRNIGYHVVYKEGNFYPINTLRNVALNQVSTPYVFLLDIDFLPMFGLYPYLKSSIRSMDMHGHGGKKVLVVPAFETQRYRTAFPASHAPTNFSRWVNATTPYQIEWAPDFEPYIVAHRDLPRYDTRFVGFGWNK

cccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHcccccccEEEEEEEccccccccccccccccccHHHHHHHHccccccccccEEEEEEEEEEEEccHHHHHHHHHHccccccccccccccHHHHHcccccccccccccccEEEccccccccccccccccccHHHHHHHccccccccccccEEEEEccEEccccHHHHHHHHHccccccEEEEEccccccccccccccccccccccccccEEEHHHccHHHHHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccEEEEccccccccccccccHHHHHHHccccEEEccccccccccccccHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHccccccccHHHHHHHHHcccccHHHHccccccccccccHHHHHHcccccccEEEcccccccccccccccccEEEEEEcccHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHcccccccccEEEEEEEEcccccccHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHcccccccccEEEEEccEEEcccccccccccccccHHHHHHcccccEEEccccccEEEEEcccccccccccccccccc

cccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHccccccEEEEEEEHHHccccccccccccccHHHHHHHHHHHHHccccccEEEEEEccEEEHccHHHHHHHHHHccHHHEEEEEccccHHHHHHHHcccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHccccccEEEEEEccEEEcccHHHHHHHHHHccHHHEEEEccccccccHcccHccccccccccccccHHHHEEcHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccEEEEEcccEcEEcccccccccHcccccccEEEEEccccccEEEcccHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHccEHEEcccccccccccccEEEEEEEccccEEEEccccHHHHccccccccccEEEEEEccHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHccHHHHHcccEEEEEEEEccccccHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHccccccccEEEEEEcEEEEEEEEccccccccccHHHHHccccccEEEEccccccEEEEccccccccccEEcccccc

mssdeepviptcEVIQVAIVCAGYNSTRSLVTLIKSILFyrknplhfhlITDTVALNILQTLFstwsvpqvEVSFYLADSVvedvswipnkhysgvygllkltlpkvlpeTLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIglvenqsdwylgklwknhkpwpalgrgfyLADSvvedvswipnkhysgvygllkltlpkvlpeTLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIglvenqsdwylgklwknhkpwpalgrgfnTGVILLDltklrdisWAGFWRIIAEKFLLTRLWTSLADQDIFNAIisehpylvytlpcqwnvqlsdntrsdelcyteltdlkiihwnspkklkvKNKHMEFFRNLYLTFLEYDGNLLRRELFGCNLTQTTLQQAELSnlneedpcydlrRSKLTSLRTHLYFLEYEyeassdgndvTLVAQLSMDRLqmveinpnnvdeyeassdgndvTLVAQLSMDRLQMVEMLFKHwegpisltlyMSDAEAQQFLSYAGNSEALRSRRNIGyhvvykegnfypintlrnvalnqvstpyvflldidflpmfglypyLKSSIrsmdmhghggkKVLVVPafetqryrtafpashaptnfsrwvnattpyqiewapdfepyivahrdlprydtrfvgfgwnk

MSSDEEPVIPTCEVIQVAIVCAGYNSTRSLVTLIKSILFYRKNPLHFHLITDTVALNILQTLFSTWSVPQVEVSFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCYTELtdlkiihwnspkklkvknKHMEFFRNLYLTFLEYDGNLLRRELFGCNLTQTTLQQAELSNLNEEDPCYDLRRSKLTSLRTHLYFLEYEyeassdgnDVTLVAQLSMDRLQMVEINPNNVDEYEASSDGNDVTLVAQLSMDRLQMVEMLFKHWEGPISLTLYMSDAEAQQFLSYAGNSEALRSRRNIGYHVVYKEGNFYPINTLRNVALNQVSTPYVFLLDIDFLPMFGLYPYLKSSIRSMDMHGHGGKKVLVVPAFETQRYRTAfpashaptnfsrWVNATTPYQIEWAPDFEPYIVAHRDLPRYDTRFVGFGWNK

*******VIPTCEVIQVAIVCAGYNSTRSLVTLIKSILFYRKNPLHFHLITDTVALNILQTLFSTWSVPQVEVSFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCYTELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYDGNLLRRELFGCNLTQTTLQQAELSNLNEEDPCYDLRRSKLTSLRTHLYFLEYEYEASSDGNDVTLVAQLSMDRLQMVEIN*************NDVTLVAQLSMDRLQMVEMLFKHWEGPISLTLYMSDAEAQQFLSYAGNSEALRSRRNIGYHVVYKEGNFYPINTLRNVALNQVSTPYVFLLDIDFLPMFGLYPYLKSSIRSMDMHGHGGKKVLVVPAFETQRYRTAFPASHAPTNFSRWVNATTPYQIEWAPDFEPYIVAHRDLPRYDTRFVGFGW**

*************VIQVAIVCAGYNSTRSLVTLIKSILFYRKNPLHFHLITDTVALNILQTLFSTWSVPQVEVSFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCYTELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYDGNLLRRELFGCNLTQT*L*QAELSNLNEEDPCYDLRRSKLTSLRTHLYFLEYEYEAS******TLVAQLSMDRLQMVEINPNNVDEYEASSDGNDVTLVAQLSMDRLQMVEMLFKHWEGPISLTLYMSDAEAQQFLSYAGNSEALRSRRNIGYHVVYKEGNFYPINTLRNVALNQVSTPYVFLLDIDFLPMFGLYPYLKSSIRSMDMHGHGGKKVLVVPAFETQRYRTAFPASHAPTNFSRWVNATTPYQIEWAPDFEPYIVAHRDLPRYDTRFVGFGWN*

*****EPVIPTCEVIQVAIVCAGYNSTRSLVTLIKSILFYRKNPLHFHLITDTVALNILQTLFSTWSVPQVEVSFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCYTELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYDGNLLRRELFGCNLTQTTLQQAELSNLNEEDPCYDLRRSKLTSLRTHLYFLEYEYEASSDGNDVTLVAQLSMDRLQMVEINPNNVDEYEASSDGNDVTLVAQLSMDRLQMVEMLFKHWEGPISLTLYMSDAEAQQFLSYAGNSEALRSRRNIGYHVVYKEGNFYPINTLRNVALNQVSTPYVFLLDIDFLPMFGLYPYLKSSIRSMDMHGHGGKKVLVVPAFETQRYRTAFPASHAPTNFSRWVNATTPYQIEWAPDFEPYIVAHRDLPRYDTRFVGFGWNK

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		664	2.2.26 [Sep-21-2011]
Q66PG1		750	Glycosyltransferase-like	yes	N/A	0.695	0.616	0.607	0.0
Q9Z1M7		756	Glycosyltransferase-like	yes	N/A	0.695	0.611	0.595	0.0
O95461		756	Glycosyltransferase-like	yes	N/A	0.695	0.611	0.593	0.0
Q66PG3		756	Glycosyltransferase-like	yes	N/A	0.695	0.611	0.590	0.0
Q66PG2		757	Glycosyltransferase-like	no	N/A	0.695	0.610	0.592	1e-179
Q66PG4		739	Glycosyltransferase-like	no	N/A	0.695	0.625	0.601	1e-179
Q6PA90		723	Glycosyltransferase-like	N/A	N/A	0.695	0.639	0.596	1e-168
Q32NJ7		723	Glycosyltransferase-like	N/A	N/A	0.695	0.639	0.594	1e-168
Q8N3Y3		721	Glycosyltransferase-like	no	N/A	0.695	0.640	0.561	1e-164
Q5XPT3		690	Glycosyltransferase-like	no	N/A	0.695	0.669	0.540	1e-159

>sp\|Q66PG1\|LARG2_DANRE Glycosyltransferase-like protein LARGE2 OS=Danio rerio GN=gyltl1b PE=2 SV=1	Back alignment and function desciption

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/527 (60%), Positives = 379/527 (71%), Gaps = 65/527 (12%)

Query: 166 PALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDI 225
           P++   FY AD +  +VSWIPNKHYSG+YGL+KLTL K LP  L+K IVLDTD+ FATDI
Sbjct: 186 PSVQVSFYDADELKSEVSWIPNKHYSGIYGLMKLTLTKALPSNLSKVIVLDTDITFATDI 245

Query: 226 AQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDIS 285
           A+LWA+F +  ++Q IGLVENQSDWYLG LWKNHKPWPALGRGFNTGVILL L +LR + 
Sbjct: 246 AELWAIFRKFTEKQVIGLVENQSDWYLGNLWKNHKPWPALGRGFNTGVILLYLERLRRMG 305

Query: 286 WAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCY 345
           W   WR+ AE+ L++ L TSLADQDIFNA I ++P LV+ LPC WNVQLSD+TRS++ CY
Sbjct: 306 WEQMWRLTAERELMSMLSTSLADQDIFNAFIKQNPVLVHQLPCFWNVQLSDHTRSEQ-CY 364

Query: 346 TELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYDGNLLRRELFGC----NLTQTTL 401
           TE++DLK+IHWNSPKKL+VKNKH+EFFRNLYLTFLEYDGNLLRRELFGC    +   T L
Sbjct: 365 TEVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRELFGCPSQASSESTVL 424

Query: 402 QQAELSNLNEEDPCYDLRRSKLTSLRTHLYFLEYEYEASSDGNDVTLVAQLSMDRLQMVE 461
           QQA L  L+E+D CYD RR ++   R HLYFL+YEY  + DG D+TLVAQLSMDR     
Sbjct: 425 QQA-LEELDEDDQCYDFRRERIMLHRVHLYFLQYEYSPTDDGTDITLVAQLSMDR----- 478

Query: 462 INPNNVDEYEASSDGNDVTLVAQLSMDRLQMVEMLFKHWEGPISLTLYMSDAEAQQFLSY 521
                                       LQM+E + KHWEGPISL LYMSDAEAQQFL Y
Sbjct: 479 ----------------------------LQMLEAICKHWEGPISLALYMSDAEAQQFLRY 510

Query: 522 AGNSEALRSRRNIGYHVVYKEGNFYPINTLRNVALNQVSTPYVFLLDIDFLPMFGLYPYL 581
           A  SE L++R+N+GYH+VYKEG FYP+N +RNVAL  V+TPYVFL D+DFLPM+GLY YL
Sbjct: 511 AQASEVLKNRKNVGYHIVYKEGQFYPVNLVRNVALRNVNTPYVFLTDVDFLPMYGLYDYL 570

Query: 582 KSSIRSMDMHGHGGKKVLVVPAFETQRYRTAFPAS------------------------H 617
           + SI  +DM     KK LVVPAFET RYR +FP S                        H
Sbjct: 571 RKSIVQLDM--ANTKKALVVPAFETLRYRLSFPKSKAELLSMLDMGTLYTFRYHVWTKGH 628

Query: 618 APTNFSRWVNATTPYQIEWAPDFEPYIVAHRDLPRYDTRFVGFGWNK 664
           APTN+++W  ATTPY++EW  DFEPY+V  RD P YD RFVGFGWNK
Sbjct: 629 APTNYAKWRTATTPYKVEWEADFEPYVVVRRDCPEYDQRFVGFGWNK 675

Glycosyltransferase which participates in glycosylation of alpha-dystroglycan. May carry out the synthesis of glycoprotein and glycosphingolipid sugar chains.
Danio rerio (taxid: 7955)
EC: 2EC: .EC: 4EC: .EC: -EC: .EC: -

>sp\|Q9Z1M7\|LARGE_MOUSE Glycosyltransferase-like protein LARGE1 OS=Mus musculus GN=Large PE=1 SV=1	Back alignment and function description

>sp\|O95461\|LARGE_HUMAN Glycosyltransferase-like protein LARGE1 OS=Homo sapiens GN=LARGE PE=1 SV=1	Back alignment and function description

>sp\|Q66PG3\|LARGE_CHICK Glycosyltransferase-like protein LARGE1 OS=Gallus gallus GN=LARGE PE=2 SV=1	Back alignment and function description

>sp\|Q66PG2\|LARGE_DANRE Glycosyltransferase-like protein LARGE1 OS=Danio rerio GN=large PE=2 SV=1	Back alignment and function description

>sp\|Q66PG4\|LARG2_CHICK Glycosyltransferase-like protein LARGE2 OS=Gallus gallus GN=GYLTL1B PE=2 SV=1	Back alignment and function description

>sp\|Q6PA90\|LRG2A_XENLA Glycosyltransferase-like protein LARGE2-A OS=Xenopus laevis GN=gyltl1b-a PE=2 SV=1	Back alignment and function description

>sp\|Q32NJ7\|LRG2B_XENLA Glycosyltransferase-like protein LARGE2-B OS=Xenopus laevis GN=gyltl1b-b PE=2 SV=1	Back alignment and function description

>sp\|Q8N3Y3\|LARG2_HUMAN Glycosyltransferase-like protein LARGE2 OS=Homo sapiens GN=GYLTL1B PE=2 SV=2	Back alignment and function description

>sp\|Q5XPT3\|LARG2_MOUSE Glycosyltransferase-like protein LARGE2 OS=Mus musculus GN=Gyltl1b PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		664
242008779		685	conserved hypothetical protein [Pediculu	0.697	0.675	0.650	0.0
193669092		709	PREDICTED: glycosyltransferase-like prot	0.692	0.648	0.621	0.0
94733298		750	novel protein similar to vertebrate disc	0.695	0.616	0.607	0.0
52218928		750	glycosyltransferase-like protein LARGE2	0.695	0.616	0.607	0.0
410912556		748	PREDICTED: glycosyltransferase-like prot	0.692	0.614	0.609	0.0
298684035		671	LARGE-1 [Mastomys erythroleucus]	0.695	0.688	0.597	0.0
298684009		671	LARGE-1 [Mastomys kollmannspergeri]	0.695	0.688	0.597	0.0
298684023		671	LARGE-1 [Mastomys natalensis]	0.695	0.688	0.597	0.0
298684019		671	LARGE-1 [Mastomys natalensis] gi\|2986840	0.695	0.688	0.597	0.0
298684033		671	LARGE-1 [Mastomys erythroleucus]	0.695	0.688	0.597	0.0

>gi\|242008779\|ref\|XP_002425177.1\| conserved hypothetical protein [Pediculus humanus corporis] gi\|212508879\|gb\|EEB12439.1\| conserved hypothetical protein [Pediculus humanus corporis]	Back alignment and taxonomy information

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/523 (65%), Positives = 394/523 (75%), Gaps = 60/523 (11%)

Query: 166 PALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDI 225
           P +   FY A++VV DVSWIPNKHYSGVYGL+KLTLPK+LP  L K +VLDTDV FATDI
Sbjct: 122 PQVDVRFYPAENVVPDVSWIPNKHYSGVYGLMKLTLPKILPRNLTKVVVLDTDVTFATDI 181

Query: 226 AQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDIS 285
           A+LW L +++  +Q  GLVENQSDWYLGKLWKNHKPWPALGRG+NTGVILL + +LR + 
Sbjct: 182 AELWKLMTKMSDKQAFGLVENQSDWYLGKLWKNHKPWPALGRGYNTGVILLQMKRLRRLK 241

Query: 286 WAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCY 345
           WA  WR IAEK L+T   TSLADQDI NAII ++P LVY LPCQWNVQLSDNTRS ELCY
Sbjct: 242 WAHLWRFIAEKDLVTMYSTSLADQDILNAIIKQYPELVYKLPCQWNVQLSDNTRS-ELCY 300

Query: 346 TELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYDGNLLRRELFGCNLTQTTLQQAE 405
           TE+TDLK+IHWNSPKKLKV+NKH+EFFRNLYLTFLEYDGNLLRRELFGCN+++ ++ Q E
Sbjct: 301 TEVTDLKVIHWNSPKKLKVQNKHVEFFRNLYLTFLEYDGNLLRRELFGCNISRPSVPQQE 360

Query: 406 LSNLNEEDPCYDLRRSKLTSLRTHLYFLEYEYEASSDGNDVTLVAQLSMDRLQMVEINPN 465
           L  LNEED CYD RR++++ LRTHLYFL+Y+YE S+DG DVTLVAQLSMDRL        
Sbjct: 361 LRKLNEEDQCYDFRRARISRLRTHLYFLDYDYEPSTDGADVTLVAQLSMDRL-------- 412

Query: 466 NVDEYEASSDGNDVTLVAQLSMDRLQMVEMLFKHWEGPISLTLYMSDAEAQQFLSYAGNS 525
                                    QMVE L KHWEGPISLTLYMSDAEAQQFLSYA +S
Sbjct: 413 -------------------------QMVENLLKHWEGPISLTLYMSDAEAQQFLSYALSS 447

Query: 526 EALRSRRNIGYHVVYKEGNFYPINTLRNVALNQVSTPYVFLLDIDFLPMFGLYPYLKSSI 585
           E L SR+NIGYH+VYKEGNFYP+N LRNVAL QV TP+VFL DIDFLPMFGLY YLK+ +
Sbjct: 448 EILSSRKNIGYHIVYKEGNFYPVNLLRNVALQQVKTPFVFLTDIDFLPMFGLYEYLKTCV 507

Query: 586 RSMDMHGHGGKKVLVVPAFETQRYRTAFPAS------------------------HAPTN 621
           + +++      K LVVPAFETQRYR  FP S                        HAPTN
Sbjct: 508 QLLNL--ENSNKALVVPAFETQRYRITFPRSKADLLRMLDMGSLFTFRYDVWPKGHAPTN 565

Query: 622 FSRWVNATTPYQIEWAPDFEPYIVAHRDLPRYDTRFVGFGWNK 664
           +++W  AT+PY++ W PD+EPYIV  +D+P YDTRFVGFGWNK
Sbjct: 566 YTKWRTATSPYEVSWEPDYEPYIVVKKDIPLYDTRFVGFGWNK 608

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|193669092\|ref\|XP_001944635.1\| PREDICTED: glycosyltransferase-like protein LARGE1-like isoform 1 [Acyrthosiphon pisum] gi\|328699413\|ref\|XP_003240926.1\| PREDICTED: glycosyltransferase-like protein LARGE1-like isoform 2 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|94733298\|emb\|CAK04442.1\| novel protein similar to vertebrate discs, large homolog 3 (neuroendocrine-dlg, Drosophila) (DLG3) [Danio rerio]	Back alignment and taxonomy information

>gi\|52218928\|ref\|NP_001004538.1\| glycosyltransferase-like protein LARGE2 [Danio rerio] gi\|82083909\|sp\|Q66PG1.1\|LARG2_DANRE RecName: Full=Glycosyltransferase-like protein LARGE2; AltName: Full=Glycosyltransferase-like 1B gi\|51872297\|gb\|AAU12252.1\| glycosyltransferase-like 1B [Danio rerio] gi\|190336631\|gb\|AAI62103.1\| Glycosyltransferase-like 1b [Danio rerio]	Back alignment and taxonomy information

>gi\|410912556\|ref\|XP_003969755.1\| PREDICTED: glycosyltransferase-like protein LARGE2-like [Takifugu rubripes]	Back alignment and taxonomy information

>gi\|298684035\|gb\|ADI96197.1\| LARGE-1 [Mastomys erythroleucus]	Back alignment and taxonomy information

>gi\|298684009\|gb\|ADI96184.1\| LARGE-1 [Mastomys kollmannspergeri]	Back alignment and taxonomy information

>gi\|298684023\|gb\|ADI96191.1\| LARGE-1 [Mastomys natalensis]	Back alignment and taxonomy information

>gi\|298684019\|gb\|ADI96189.1\| LARGE-1 [Mastomys natalensis] gi\|298684021\|gb\|ADI96190.1\| LARGE-1 [Mastomys natalensis]	Back alignment and taxonomy information

>gi\|298684033\|gb\|ADI96196.1\| LARGE-1 [Mastomys erythroleucus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		664
ZFIN\|ZDB-GENE-050419-253		750	gyltl1b "glycosyltransferase-l	0.442	0.392	0.68	3.3e-188
UNIPROTKB\|F1NC73		756	LARGE "Glycosyltransferase-lik	0.442	0.388	0.67	1.2e-186
UNIPROTKB\|F1NQG7		752	LARGE "Glycosyltransferase-lik	0.442	0.390	0.67	1.2e-186
MGI\|MGI:1342270		756	Large "like-glycosyltransferas	0.442	0.388	0.666	5.4e-186
UNIPROTKB\|O95461		756	LARGE "Glycosyltransferase-lik	0.442	0.388	0.666	1.1e-185
UNIPROTKB\|F1P723		756	LARGE "Uncharacterized protein	0.442	0.388	0.67	2.3e-185
UNIPROTKB\|Q66PG3		756	LARGE "Glycosyltransferase-lik	0.442	0.388	0.666	3.7e-185
ZFIN\|ZDB-GENE-061204-1		757	large "like-glycosyltransferas	0.444	0.389	0.662	5.4e-184
UNIPROTKB\|E9PH73		555	LARGE "Glycosyltransferase-lik	0.420	0.502	0.680	4.8e-183
UNIPROTKB\|E1BDI0		534	LARGE "Uncharacterized protein	0.396	0.492	0.672	6.4e-173

ZFIN\|ZDB-GENE-050419-253 gyltl1b "glycosyltransferase-like 1b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 1103 (393.3 bits), Expect = 3.3e-188, Sum P(3) = 3.3e-188
 Identities = 204/300 (68%), Positives = 243/300 (81%)

Query:   166 PALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDI 225
             P++   FY AD +  +VSWIPNKHYSG+YGL+KLTL K LP  L+K IVLDTD+ FATDI
Sbjct:   186 PSVQVSFYDADELKSEVSWIPNKHYSGIYGLMKLTLTKALPSNLSKVIVLDTDITFATDI 245

Query:   226 AQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDIS 285
             A+LWA+F +  ++Q IGLVENQSDWYLG LWKNHKPWPALGRGFNTGVILL L +LR + 
Sbjct:   246 AELWAIFRKFTEKQVIGLVENQSDWYLGNLWKNHKPWPALGRGFNTGVILLYLERLRRMG 305

Query:   286 WAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCY 345
             W   WR+ AE+ L++ L TSLADQDIFNA I ++P LV+ LPC WNVQLSD+TRS++ CY
Sbjct:   306 WEQMWRLTAERELMSMLSTSLADQDIFNAFIKQNPVLVHQLPCFWNVQLSDHTRSEQ-CY 364

Query:   346 TELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYDGNLLRRELFGC----NLTQTTL 401
             TE++DLK+IHWNSPKKL+VKNKH+EFFRNLYLTFLEYDGNLLRRELFGC    +   T L
Sbjct:   365 TEVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRELFGCPSQASSESTVL 424

Query:   402 QQAELSNLNEEDPCYDLRRSKLTSLRTHLYFLEYEYEASSDGNDVTLVAQLSMDRLQMVE 461
             QQA L  L+E+D CYD RR ++   R HLYFL+YEY  + DG D+TLVAQLSMDRLQM+E
Sbjct:   425 QQA-LEELDEDDQCYDFRRERIMLHRVHLYFLQYEYSPTDDGTDITLVAQLSMDRLQMLE 483

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;ISS

GO:0006486 "protein glycosylation" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB\|F1NC73 LARGE "Glycosyltransferase-like protein LARGE1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NQG7 LARGE "Glycosyltransferase-like protein LARGE1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1342270 Large "like-glycosyltransferase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|O95461 LARGE "Glycosyltransferase-like protein LARGE1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P723 LARGE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q66PG3 LARGE "Glycosyltransferase-like protein LARGE1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-061204-1 large "like-glycosyltransferase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PH73 LARGE "Glycosyltransferase-like protein LARGE1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BDI0 LARGE "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q66PG3	LARGE_CHICK	2, ., 4, ., -, ., -	0.5901	0.6957	0.6111	yes	N/A
O95461	LARGE_HUMAN	2, ., 4, ., -, ., -	0.5939	0.6957	0.6111	yes	N/A
Q6P7A1	LARG2_RAT	2, ., 4, ., -, ., -	0.5388	0.6972	0.6710	yes	N/A
Q66PG1	LARG2_DANRE	2, ., 4, ., -, ., -	0.6072	0.6957	0.616	yes	N/A
Q9Z1M7	LARGE_MOUSE	2, ., 4, ., -, ., -	0.5958	0.6957	0.6111	yes	N/A
Q21389	LGE1_CAEEL	2, ., 4, ., -, ., -	0.3371	0.6234	0.6561	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		664
cd06431		280	cd06431, GT8_LARGE_C, LARGE catalytic domain has c	1e-131
cd06431		280	cd06431, GT8_LARGE_C, LARGE catalytic domain has c	3e-86
cd00505		246	cd00505, Glyco_transf_8, Members of glycosyltransf	6e-39
pfam13896		317	pfam13896, Glyco_transf_49, Glycosyl-transferase f	2e-28
cd00505		246	cd00505, Glyco_transf_8, Members of glycosyltransf	2e-27
cd06430		304	cd06430, GT8_like_2, GT8_like_2 represents a subfa	4e-15
pfam01501		248	pfam01501, Glyco_transf_8, Glycosyl transferase fa	2e-11
cd04194		248	cd04194, GT8_A4GalT_like, A4GalT_like proteins cat	6e-10
cd04194		248	cd04194, GT8_A4GalT_like, A4GalT_like proteins cat	1e-06
COG1442		325	COG1442, RfaJ, Lipopolysaccharide biosynthesis pro	6e-05
pfam01501		248	pfam01501, Glyco_transf_8, Glycosyl transferase fa	7e-05
COG1442		325	COG1442, RfaJ, Lipopolysaccharide biosynthesis pro	0.001
cd06430		304	cd06430, GT8_like_2, GT8_like_2 represents a subfa	0.003
cd06429		257	cd06429, GT8_like_1, GT8_like_1 represents a subfa	0.003

>gnl\|CDD\|133053 cd06431, GT8_LARGE_C, LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

 Score =  386 bits (993), Expect = e-131
 Identities = 158/227 (69%), Positives = 189/227 (83%), Gaps = 1/227 (0%)

Query: 166 PALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDI 225
           PA+   FY A+ +   VSWIPNKHYSG+YGL+KL L + LP  L K IVLDTD+ FATDI
Sbjct: 55  PAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDI 114

Query: 226 AQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDIS 285
           A+LW +F +   +Q +GLVENQSDWYLG LWKNH+PWPALGRGFNTGVILLDL KLR + 
Sbjct: 115 AELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGFNTGVILLDLDKLRKMK 174

Query: 286 WAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCY 345
           W   WR+ AE+ L++ L TSLADQDIFNA+I ++P+LVY LPC WNVQLSD+TRS++ CY
Sbjct: 175 WESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNVQLSDHTRSEQ-CY 233

Query: 346 TELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYDGNLLRRELF 392
            +++DLK+IHWNSPKKL+VKNKH+EFFRNLYLTFLEYDGNLLRRELF
Sbjct: 234 RDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRELF 280

The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil motif, and two putative catalytic domains. This catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. Length = 280

>gnl\|CDD\|133053 cd06431, GT8_LARGE_C, LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>gnl\|CDD\|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>gnl\|CDD\|222439 pfam13896, Glyco_transf_49, Glycosyl-transferase for dystroglycan	Back alignment and domain information

>gnl\|CDD\|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>gnl\|CDD\|133052 cd06430, GT8_like_2, GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>gnl\|CDD\|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8	Back alignment and domain information

>gnl\|CDD\|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>gnl\|CDD\|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>gnl\|CDD\|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8	Back alignment and domain information

>gnl\|CDD\|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|133052 cd06430, GT8_like_2, GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>gnl\|CDD\|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		664
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	100.0
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	100.0
PF13896		317	Glyco_transf_49: Glycosyl-transferase for dystrogl	100.0
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	100.0
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	100.0
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	100.0
PLN02718		603	Probable galacturonosyltransferase	100.0
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	100.0
PLN02742		534	Probable galacturonosyltransferase	100.0
PLN02523		559	galacturonosyltransferase	100.0
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	100.0
PLN02769		629	Probable galacturonosyltransferase	100.0
PLN02659		534	Probable galacturonosyltransferase	100.0
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	100.0
PLN02870		533	Probable galacturonosyltransferase	100.0
PLN02867		535	Probable galacturonosyltransferase	100.0
PLN02829		639	Probable galacturonosyltransferase	100.0
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	99.98
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	99.97
KOG3765\|consensus		386		99.97
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	99.92
PLN00176		333	galactinol synthase	99.91
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	99.77
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	99.59
KOG1879\|consensus		1470		99.43
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	99.27
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	99.19
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	99.06
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	98.96
PLN02523		559	galacturonosyltransferase	98.88
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	98.81
PLN02870		533	Probable galacturonosyltransferase	98.76
PLN02659		534	Probable galacturonosyltransferase	98.75
PLN02742		534	Probable galacturonosyltransferase	98.74
PLN02718		603	Probable galacturonosyltransferase	98.72
PLN02867		535	Probable galacturonosyltransferase	98.72
PLN02829		639	Probable galacturonosyltransferase	98.69
PLN02769		629	Probable galacturonosyltransferase	98.68
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	98.65
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	98.58
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	98.39
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	98.01
COG5597		368	Alpha-N-acetylglucosamine transferase [Cell envelo	97.81
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	97.29
PF10111		281	Glyco_tranf_2_2: Glycosyltransferase like family 2	97.1
KOG3765\|consensus		386		96.66
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	96.41
PF05637		239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	95.97
PLN00176		333	galactinol synthase	95.93
KOG1879\|consensus		1470		94.44
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	94.38
COG4092		346	Predicted glycosyltransferase involved in capsule	94.02
PF11051		271	Mannosyl_trans3: Mannosyltransferase putative; Int	92.17
PF00535		169	Glycos_transf_2: Glycosyl transferase family 2; In	92.17
cd02510		299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	89.76
cd06420		182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	89.35
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	86.05
cd02515		271	Glyco_transf_6 Glycosyltransferase family 6 compri	85.76
KOG1928\|consensus		409		85.61
cd04186		166	GT_2_like_c Subfamily of Glycosyltransferase Famil	84.35
KOG1950\|consensus		369		82.6
PF11051		271	Mannosyl_trans3: Mannosyltransferase putative; Int	81.24
PF03414		337	Glyco_transf_6: Glycosyltransferase family 6; Inte	81.16

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

Probab=100.00  E-value=2.8e-56  Score=465.24  Aligned_cols=279  Identities=72%  Similarity=1.279  Sum_probs=244.6

Q ss_pred             EEEEEEEeCCCchHHHHHHHHHHHhhCCCCeEEEEEeCchhHHHHHHHhhccCCCceeEEEEecccccccccccCCCCcc
Q psy3847          15 IQVAIVCAGYNSTRSLVTLIKSILFYRKNPLHFHLITDTVALNILQTLFSTWSVPQVEVSFYLADSVVEDVSWIPNKHYS   94 (664)
Q Consensus        15 ihI~~v~~g~~~~~~~~~~ikSil~~~~~~l~fhii~d~~s~~~l~~l~~~~~~~~~~~~fy~~~~~~~~v~~ip~~~~~   94 (664)
                      ||+++|+++.+|.++++++|+||+.|++.+++||||+++++++.++.+.+.+...++++.||++++..+           
T Consensus         1 ~~~~iv~~~~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~-----------   69 (280)
T cd06431           1 IHVAIVCAGYNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKS-----------   69 (280)
T ss_pred             CEEEEEEccCCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhh-----------
Confidence            689999999999999999999999999888999999999999999999888887889999998853221           


Q ss_pred             chhhhhhhccCCcCccccCeEEEEecceeecccHHHHHHHhhhccccccccccccchhHHHHhhhhccccCCccCccccc
Q psy3847          95 GVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFYL  174 (664)
Q Consensus        95 ~~~~~~rL~lp~iLP~~v~kvIyLD~Dilv~~di~eLw~~f~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~  174 (664)
                                                                                                      
T Consensus        70 --------------------------------------------------------------------------------   69 (280)
T cd06431          70 --------------------------------------------------------------------------------   69 (280)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCCchhhhhhhcccccCccCCCeEEEEecceeeccChHHHHHHhhhcCCCcEEEEeeccchhhhcc
Q psy3847         175 ADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGK  254 (664)
Q Consensus       175 ~~~~~~~vs~ip~~hy~~~~~y~RL~lp~lLp~~~dkvLYLD~D~iv~~DI~eLw~~~~~~~~~~~~a~v~d~~~~y~~~  254 (664)
                            .++++|+.||++.++|+||+||++||++++||||||||+||++||++||+++++|.+++++|++++.++||.++
T Consensus        70 ------~~~~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~~~~~~  143 (280)
T cd06431          70 ------RVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGN  143 (280)
T ss_pred             ------hhccCcccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchhhhhhh
Confidence                  23456677888877899999999999889999999999999999999999977788899999999988888776


Q ss_pred             ccccCCCCCCCCCceeEEEEEEechhHHhhchhHHHHHHHHHHhhhcCCCCCCChHHHHHHHhcCCCeEEEeCCcccccc
Q psy3847         255 LWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQL  334 (664)
Q Consensus       255 ~~~~~~~~p~~~~yfNSGVmLinL~~~R~~~~~~~~~~~~~~~l~~~~~~~~~DQDiLN~v~~~~p~~v~~Lp~~wN~q~  334 (664)
                      .++...+++..+.|||||||||||++||+.+++++|...++++......+.++|||+||+++.++|++++.|||+||+|.
T Consensus       144 ~~~~~~~~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~~~~~~~~L~~~wN~~~  223 (280)
T cd06431         144 LWKNHRPWPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNVQL  223 (280)
T ss_pred             hhhccCCCcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcCCcceeEECCCcccccc
Confidence            54444566666789999999999999999999999988887765445667899999999999999999999999999998


Q ss_pred             CCCCCChhhhhhhcCCcEEEEcCCCCCCCccCCCchhhHHHHHHHHhccchhhHHhh
Q psy3847         335 SDNTRSDELCYTELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYDGNLLRREL  391 (664)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~IIHf~g~~KPW~~~~~~~~f~~~y~~~~~~~g~~l~~~~  391 (664)
                      +.+... +.|..+.++|+||||+|+.|||..++..++||++|.+|++++|++|||+.
T Consensus       224 ~~~~~~-~~~~~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~l~~~~  279 (280)
T cd06431         224 SDHTRS-EQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRREL  279 (280)
T ss_pred             CccchH-hHhhcCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHHhcCchhhhhhc
Confidence            766655 55665678999999999999999998789999999999999999999875

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>KOG3765\|consensus	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>KOG1879\|consensus	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]	Back alignment and domain information

>KOG3765\|consensus	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>KOG1879\|consensus	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose	Back alignment and domain information

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans	Back alignment and domain information

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens	Back alignment and domain information

>KOG1928\|consensus	Back alignment and domain information

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>KOG1950\|consensus	Back alignment and domain information

>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose	Back alignment and domain information

>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		664
3tzt_A		276	Glycosyl transferase family 8; structural genomics	2e-14
3tzt_A		276	Glycosyl transferase family 8; structural genomics	1e-10
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	2e-12
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	5e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276	Back alignment and structure

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 33/224 (14%), Positives = 72/224 (32%), Gaps = 18/224 (8%)

Query: 165 WPALGRGFYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATD 224
                   Y   +  +  S+             +L   + LPE L + + LD D++    
Sbjct: 57  LKKFSYTLYPIRATDDLFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINP 116

Query: 225 IAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDI 284
           +  L            +    +     +     N          +N+G++L++L + R+ 
Sbjct: 117 LDDLLRTD---ISDYILAAASHTGKTDMAN-NVNRIRLGTDTDYYNSGLLLINLKRAREE 172

Query: 285 SWAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELC 344
                     E   +  L     DQDI NA+  +  Y +      +N    + +      
Sbjct: 173 IDPDEIFSFVEDNHMNLLL---PDQDILNAMYGDRIYPL--DDLIYNYDARNYSSYLIRS 227

Query: 345 YTE------LTDLKIIHWNSPKK-LKVKNKHMEFFRNLYLTFLE 381
             +      +    ++H+    K  K  +++   F +LY  ++ 
Sbjct: 228 KKQADLAWLMDHTVVLHFCGRDKPWKKNHRN--KFTSLYKHYMS 269

PyMOL of 3tzt

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276	Back alignment and structure

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311	Back alignment and structure

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		664
3tzt_A		276	Glycosyl transferase family 8; structural genomics	100.0
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	100.0
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	99.92
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	99.91
3tzt_A		276	Glycosyl transferase family 8; structural genomics	98.88
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	98.65
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	96.71
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	95.55
3ioh_A		298	Histo-blood group ABO system transferase; GTA, cis	82.2

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Probab=100.00  E-value=1.9e-41  Score=353.06  Aligned_cols=259  Identities=17%  Similarity=0.160  Sum_probs=182.2

Q ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHhhCCC-CeEEEEEeCchhHHHHHHHhhccCCCceeEEEEecccccccccccCCCC
Q psy3847          14 VIQVAIVCAGYNSTRSLVTLIKSILFYRKN-PLHFHLITDTVALNILQTLFSTWSVPQVEVSFYLADSVVEDVSWIPNKH   92 (664)
Q Consensus        14 ~ihI~~v~~g~~~~~~~~~~ikSil~~~~~-~l~fhii~d~~s~~~l~~l~~~~~~~~~~~~fy~~~~~~~~v~~ip~~~   92 (664)
                      +|||++. +|.+|.++++++|+||+.|++. +++||+++++++.+..+.+-+.+...++++.+++++..  .++      
T Consensus         5 ~i~I~~~-~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~--~~~------   75 (276)
T 3tzt_A            5 ADALLLT-LDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDD--LFS------   75 (276)
T ss_dssp             CEEEEEE-CCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred             eEEEEEE-eCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHH--HHh------
Confidence            5999974 4669999999999999999984 79999999988766555444333334678888887631  010      


Q ss_pred             ccchhhhhhhccCCcCccccCeEEEEecceeecccHHHHHHHhhhccccccccccccchhHHHHhhhhccccCCccCccc
Q psy3847          93 YSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGF  172 (664)
Q Consensus        93 ~~~~~~~~rL~lp~iLP~~v~kvIyLD~Dilv~~di~eLw~~f~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~  172 (664)
                                                                                                      
T Consensus        76 --------------------------------------------------------------------------------   75 (276)
T 3tzt_A           76 --------------------------------------------------------------------------------   75 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCCchhhhhhhcccccCccCCCeEEEEecceeeccChHHHHHHhhhcCCCcEEEEeeccchhhh
Q psy3847         173 YLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYL  252 (664)
Q Consensus       173 ~~~~~~~~~vs~ip~~hy~~~~~y~RL~lp~lLp~~~dkvLYLD~D~iv~~DI~eLw~~~~~~~~~~~~a~v~d~~~~y~  252 (664)
                                 .+|.+.+.+..+|+||++|+++|++++||||||+|++|++||++||+++  + ++..+|||+|+.....
T Consensus        76 -----------~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~d--l-~~~~~aav~d~~~~~~  141 (276)
T 3tzt_A           76 -----------FAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTD--I-SDYILAAASHTGKTDM  141 (276)
T ss_dssp             -------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCC--C-TTSSEEEEEC------
T ss_pred             -----------cCccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcC--C-CCCeEEEEEecccchH
Confidence                       0111112357899999999999988999999999999999999999996  5 4567888887653211


Q ss_pred             ccccccCCCCCCCCCceeEEEEEEechhHHhhchhHHHHHHHHHHhhhcCCCCCCChHHHHHHHhcCCCeEEEeCC-ccc
Q psy3847         253 GKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPC-QWN  331 (664)
Q Consensus       253 ~~~~~~~~~~p~~~~yfNSGVmLinL~~~R~~~~~~~~~~~~~~~l~~~~~~~~~DQDiLN~v~~~~p~~v~~Lp~-~wN  331 (664)
                      ... .+..+++..+.|||||||||||++||+.++.+++.++++++   ...+.++|||+||.+|+++   ++.||+ +||
T Consensus       142 ~~~-~~~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~---~~~~~~~DQd~LN~~f~~~---~~~Lp~~~wN  214 (276)
T 3tzt_A          142 ANN-VNRIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDN---HMNLLLPDQDILNAMYGDR---IYPLDDLIYN  214 (276)
T ss_dssp             ---------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC-----------CHHHHHHHGGG---EEEEEHHHHS
T ss_pred             HHH-HHHhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhc---cccccCCChhHHHHHHhCC---EEECCchhee
Confidence            100 01223333347999999999999999999999999888765   3456799999999999999   999999 999


Q ss_pred             cccCCCCCC------hhhhhhhcCCcEEEEcCCCCCCCccCCCchhhHHHHHHHHhcc
Q psy3847         332 VQLSDNTRS------DELCYTELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEYD  383 (664)
Q Consensus       332 ~q~~~~~~~------~~~~~~~~~~~~IIHf~g~~KPW~~~~~~~~f~~~y~~~~~~~  383 (664)
                      ++.+.....      ........++++||||+|+.|||...+ .++|+++|+.|.++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~-~~~~~~~w~~Y~~~~  271 (276)
T 3tzt_A          215 YDARNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNH-RNKFTSLYKHYMSLT  271 (276)
T ss_dssp             EETTCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTC-CSTTHHHHHHHHHHH
T ss_pred             eecccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCC-CCchHHHHHHHHHHH
Confidence            997432110      001112356799999999999999876 789999999999874

PyMOL of 3tzt

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		664
d1ga8a_		282	c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri	1e-07
d1ga8a_		282	c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri	4e-07

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score = 51.5 bits (122), Expect = 1e-07
 Identities = 37/220 (16%), Positives = 65/220 (29%), Gaps = 27/220 (12%)

Query: 172 FYLADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWAL 231
           F   +        +  +H S      +L L + + +   K + LD DV+    +  LW  
Sbjct: 61  FIDVNPEDFAGFPLNIRHISITT-YARLKLGEYIAD-CDKVLYLDIDVLVRDSLTPLWDT 118

Query: 232 FSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWR 291
                       +  +        +K           FN GV+L++L K R         
Sbjct: 119 DLGDNWLGASIDLFVERQEG----YKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSS 174

Query: 292 IIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQLSDNTRSDELCYTELTD- 350
              E++     +    DQDI N +       V     ++N   ++         +  TD 
Sbjct: 175 EWVEQYKDVMQY---QDQDILNGLFKGG---VCYANSRFNFMPTNYAFMANWFASRHTDP 228

Query: 351 -----------LKIIHWNSPKK---LKVKNKHMEFFRNLY 376
                      + + H+  P K           E F  L 
Sbjct: 229 LYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELA 268

PyMOL of d1ga8a_

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		664
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	100.0
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	99.89
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	98.66
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	96.91
d1o7qa_		287	alpha-1,3-galactosyltransferase catalytic domain {	96.1
d1lzia_		283	Glycosyltransferase A catalytic domain {Human (Hom	95.07
d1xhba2		328	Polypeptide N-acetylgalactosaminyltransferase 1, N	85.46

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=5.3e-38  Score=324.62  Aligned_cols=257  Identities=15%  Similarity=0.162  Sum_probs=192.8

Q ss_pred             EEEEEEEeCCCchHHHHHHHHHHHhhCCC-CeEEEEEeCchhHHHHHHHhhccCCCceeEEEEecccccccccccCCCCc
Q psy3847          15 IQVAIVCAGYNSTRSLVTLIKSILFYRKN-PLHFHLITDTVALNILQTLFSTWSVPQVEVSFYLADSVVEDVSWIPNKHY   93 (664)
Q Consensus        15 ihI~~v~~g~~~~~~~~~~ikSil~~~~~-~l~fhii~d~~s~~~l~~l~~~~~~~~~~~~fy~~~~~~~~v~~ip~~~~   93 (664)
                      |||++++ +.+|..++.++|+||+.+++. +++||+++++.+.+....+.+.....++++.|++++...  +.       
T Consensus         1 mnIv~~~-D~nY~~~~~~~i~SL~~~~~~~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~--~~-------   70 (282)
T d1ga8a_           1 MDIVFAA-DDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPED--FA-------   70 (282)
T ss_dssp             CEEEEEE-CGGGHHHHHHHHHHHHHHCTTSCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGG--GT-------
T ss_pred             CEEEEEC-CHHHHHHHHHHHHHHHHHCcCCCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchH--hc-------
Confidence            6899865 559999999999999998764 699999999988777666655444456778887775321  00       


Q ss_pred             cchhhhhhhccCCcCccccCeEEEEecceeecccHHHHHHHhhhccccccccccccchhHHHHhhhhccccCCccCcccc
Q psy3847          94 SGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLGKLWKNHKPWPALGRGFY  173 (664)
Q Consensus        94 ~~~~~~~rL~lp~iLP~~v~kvIyLD~Dilv~~di~eLw~~f~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~  173 (664)
                                   ..|                                                                
T Consensus        71 -------------~~~----------------------------------------------------------------   73 (282)
T d1ga8a_          71 -------------GFP----------------------------------------------------------------   73 (282)
T ss_dssp             -------------TSC----------------------------------------------------------------
T ss_pred             -------------ccc----------------------------------------------------------------
Confidence                         000                                                                


Q ss_pred             ccccccccccccCCCCCCchhhhhhhcccccCccCCCeEEEEecceeeccChHHHHHHhhhcCCCcEEEEeeccchhhhc
Q psy3847         174 LADSVVEDVSWIPNKHYSGVYGLLKLTLPKVLPETLAKTIVLDTDVIFATDIAQLWALFSRLRQRQTIGLVENQSDWYLG  253 (664)
Q Consensus       174 ~~~~~~~~vs~ip~~hy~~~~~y~RL~lp~lLp~~~dkvLYLD~D~iv~~DI~eLw~~~~~~~~~~~~a~v~d~~~~y~~  253 (664)
                                 . ...+.+.++|+||++|++|| +++||||||||+||++||++||+++   .++..+|+++|.......
T Consensus        74 -----------~-~~~~~s~~~y~Rl~l~~~lp-~~~kiiyLD~D~iv~~dl~~L~~~~---~~~~~~aa~~d~~~~~~~  137 (282)
T d1ga8a_          74 -----------L-NIRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTD---LGDNWLGASIDLFVERQE  137 (282)
T ss_dssp             -----------C-CCTTCCGGGGGGGGHHHHCC-SCSCEEEECSSEEECSCCHHHHTCC---CTTCSEEEEECHHHHTST
T ss_pred             -----------c-cccccCHHHHHHHHHhhhCC-ccceEEEecCCEEEecchHHHHhcc---cccceeeeehhhhhhhhh
Confidence                       0 11223577899999999999 7999999999999999999999986   455667777765322111


Q ss_pred             cccccCCCCCCCCCceeEEEEEEechhHHhhchhHHHHHHHHHHhhhcCCCCCCChHHHHHHHhcCCCeEEEeCCccccc
Q psy3847         254 KLWKNHKPWPALGRGFNTGVILLDLTKLRDISWAGFWRIIAEKFLLTRLWTSLADQDIFNAIISEHPYLVYTLPCQWNVQ  333 (664)
Q Consensus       254 ~~~~~~~~~p~~~~yfNSGVmLinL~~~R~~~~~~~~~~~~~~~l~~~~~~~~~DQDiLN~v~~~~p~~v~~Lp~~wN~q  333 (664)
                       .+....+++..+.||||||||+|+++||+.++.+++.+.++++   .....++|||+||.+|+++   +..||++||++
T Consensus       138 -~~~~~~~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~---~~~~~~~DQd~LN~~f~~~---~~~L~~~~N~~  210 (282)
T d1ga8a_         138 -GYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQY---KDVMQYQDQDILNGLFKGG---VCYANSRFNFM  210 (282)
T ss_dssp             -THHHHTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHH---TTTCSSTHHHHHHHHHTTS---EEEECGGGSBC
T ss_pred             -hhHHHhCCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhc---ccCcccCchhHHHHHhcCC---EEeCCHHHeec
Confidence             1113345555568999999999999999999999999988876   4567799999999999999   99999999998


Q ss_pred             cCCCCC---------C---hhhhhhhcCCcEEEEcCCCCCCCccCCCchhhHHHHHHHHhc
Q psy3847         334 LSDNTR---------S---DELCYTELTDLKIIHWNSPKKLKVKNKHMEFFRNLYLTFLEY  382 (664)
Q Consensus       334 ~~~~~~---------~---~~~~~~~~~~~~IIHf~g~~KPW~~~~~~~~f~~~y~~~~~~  382 (664)
                      ...+..         .   .........+++||||+|+.|||...+ .+.+++.|+.|...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~-~~~~~~~~~~~~~~  270 (282)
T d1ga8a_         211 PTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDC-TAWGAERFTELAGS  270 (282)
T ss_dssp             HHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTC-CSTTTHHHHHHHTT
T ss_pred             cccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCC-CChhHHHHHHHHHh
Confidence            532110         0   012234467899999999999998775 56677777766653

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure