Psyllid ID: psy3948

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MFVDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIALTLQFSALV
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccHHHcccccccccccccccHHHHcccHHHHHHHHHccccccccccHHHHHHcccHHHHHHHHHcccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccHccHHHcccccHHHHHHHcccccccccccccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccHHHHHHHccHHHHHHHccccccEEEEHHHHHHHHHcc
Coil and Loop (DISEMBL)
mfvdhtilKCTFCNIIFNKLQDEELIMTHCksckkpkrpdksynyacfictyhtrkhgdmighmrkhtgvkplkcsscnyscstksaLSVHQKrhtglkahkCANVIIIAIMYHILEIMLEdiqgrdhiNVNIALTLQFSALV
Flexible Loop (DISEMBL)
mfvdhtilkCTFCNIIFNKLQDEELIMTHCKsckkpkrpdksyNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRhtglkahkcANVIIIAIMYHILEIMLEDIQGRDHINVNIALTLQFSALV
Low Complexity Region (SEG)
MFVDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIALTLQFSALV
Disordered region (IsUnstruct)
**VDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKP**PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIALTLQFS***
Disordered Region (DISOPRED)
MFVDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIALTLQF****
Disordered Region (DISEMBL)
MFVDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSC***************LKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIALTLQFSALV
Disordered Region (DISPRO)
*FVDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKP*RPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIALTLQFSALV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIALTLQFSALV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
O13089	522	DNA-binding protein Ikaro	N/A	N/A	0.615	0.168	0.350	7e-10
Q1LZ87	534	Zinc finger protein 397 O	yes	N/A	0.384	0.102	0.397	2e-09
Q8VIG1	1082	RE1-silencing transcripti	yes	N/A	0.405	0.053	0.371	2e-09
Q2EI20	855	RE1-silencing transcripti	yes	N/A	0.713	0.119	0.297	2e-09
Q13127	1097	RE1-silencing transcripti	no	N/A	0.482	0.062	0.371	3e-09
Q8NF99	534	Zinc finger protein 397 O	yes	N/A	0.384	0.102	0.382	3e-09
Q5R4K8	730	Zinc finger protein 615 O	no	N/A	0.433	0.084	0.435	4e-09
O54963	1069	RE1-silencing transcripti	no	N/A	0.482	0.064	0.371	4e-09
Q8N8J6	731	Zinc finger protein 615 O	no	N/A	0.433	0.084	0.435	4e-09
Q13422	519	DNA-binding protein Ikaro	no	N/A	0.615	0.169	0.340	5e-09

>sp|O13089|IKZF1_ONCMY DNA-binding protein Ikaros OS=Oncorhynchus mykiss GN=ikzf1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 8   LKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKH 67
           LKC  C I+        ++M H +S    +RP     + C  C     + G+++ H++ H
Sbjct: 125 LKCDICGIV---CIGPNVLMVHKRS-HTGERP-----FQCTQCGASFTQKGNLLRHIKLH 175

Query: 68  TGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
           +G KP KC  CNY+C  + ALS H + H+  K HKCA
Sbjct: 176 SGEKPFKCHLCNYACRRRDALSGHLRTHSVGKPHKCA 212

Binds and activates the enhancer (delta-A element) of the CD3-delta gene. Functions in the specification and the maturation of the T-lymphocyte. Also interacts with a critical control element in the TDT (terminal deoxynucleotidyltransferase) promoter as well as with the promoters for other genes expressed during early stages of B- and T-cell development.
Oncorhynchus mykiss (taxid: 8022)

>sp|Q1LZ87|ZN397_BOVIN Zinc finger protein 397 OS=Bos taurus GN=ZNF397 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%)

Query: 37  KRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
           K P +   Y C IC +  ++H  +  H R HTG KP KC+ C  + S +S L +HQ+ H+
Sbjct: 277 KVPTEERPYRCDICGHSFKQHSSLTQHQRIHTGEKPYKCNQCGKAFSLRSYLIIHQRIHS 336

Query: 97  GLKAHKCA 104
           G KA++C+
Sbjct: 337 GEKAYECS 344

DNA-dependent transcriptional repressor.

Bos taurus (taxid: 9913)

>sp|Q8VIG1|REST_MOUSE RE1-silencing transcription factor OS=Mus musculus GN=Rest PE=2 SV=2

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
           Y C  C Y + +  + + H+R HTG +P KC  C YS S K+ L+ H + H+G K  KC 
Sbjct: 271 YTCSKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKCD 330

Query: 105 NVIIIAIMYH 114
               +A   H
Sbjct: 331 QCNYVASNQH 340

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Mus musculus (taxid: 10090)

>sp|Q2EI20|REST_DANRE RE1-silencing transcription factor OS=Danio rerio GN=rest PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 4   DHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGH 63
           D  + KCT C           +   H K   +   P K +   C  C+Y + +  + I H
Sbjct: 232 DQRVFKCTICAYT-------TISQYHWKKHLRNHFPSKLFT--CSQCSYFSDRKNNYIQH 282

Query: 64  MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYH 114
           +R H G +P +C  C YS S K+ L+ H + H+G +  KC N   +A   H
Sbjct: 283 IRTHAGERPFQCIYCEYSSSQKTHLTRHMRTHSGERPFKCDNCSYLAANQH 333

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells.

Danio rerio (taxid: 7955)

>sp|Q13127|REST_HUMAN RE1-silencing transcription factor OS=Homo sapiens GN=REST PE=1 SV=3

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
           Y C  C Y + +  + + H+R HTG +P KC  C YS S K+ L+ H + H+G K  KC 
Sbjct: 276 YTCGKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKCD 335

Query: 105 NVIIIAIMYH 114
               +A   H
Sbjct: 336 QCSYVASNQH 345

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Homo sapiens (taxid: 9606)

>sp|Q8NF99|ZN397_HUMAN Zinc finger protein 397 OS=Homo sapiens GN=ZNF397 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 41/68 (60%)

Query: 37  KRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
           K P +   Y C +C +  ++H  +  H R HTG KP KC+ C  + S +S L +HQ+ H+
Sbjct: 277 KVPPEERPYRCDVCGHSFKQHSSLTQHQRIHTGEKPYKCNQCGKAFSLRSYLIIHQRIHS 336

Query: 97  GLKAHKCA 104
           G KA++C+
Sbjct: 337 GEKAYECS 344

Isoform 3 acts as a DNA-dependent transcriptional repressor.

Homo sapiens (taxid: 9606)

>sp|Q5R4K8|ZN615_PONAB Zinc finger protein 615 OS=Pongo abelii GN=ZNF615 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 44  NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           ++AC  C   + +  D+I H R HTG KP KCS C  + +TKS L+VHQ++HTG + + C
Sbjct: 650 SFACTECGKFSLRKNDLITHQRIHTGEKPYKCSDCGKAFTTKSGLNVHQRKHTGERPYGC 709

Query: 104 AN 105
           ++
Sbjct: 710 SD 711

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|O54963|REST_RAT RE1-silencing transcription factor OS=Rattus norvegicus GN=Rest PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 37/70 (52%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
           Y C  C Y + +  + + H+R HTG +P KC  C YS S K+ L+ H + H+G K  KC 
Sbjct: 275 YTCSKCNYFSTEKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKCD 334

Query: 105 NVIIIAIMYH 114
               +A   H
Sbjct: 335 QCNYVASNQH 344

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Rattus norvegicus (taxid: 10116)

>sp|Q8N8J6|ZN615_HUMAN Zinc finger protein 615 OS=Homo sapiens GN=ZNF615 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 44  NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           ++AC  C   + +  D+I H R HTG KP KCS C  + +TKS L+VHQ++HTG + + C
Sbjct: 651 SFACTECGKFSLRKNDLITHQRIHTGEKPYKCSDCGKAFTTKSGLNVHQRKHTGERPYGC 710

Query: 104 AN 105
           ++
Sbjct: 711 SD 712

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q13422|IKZF1_HUMAN DNA-binding protein Ikaros OS=Homo sapiens GN=IKZF1 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 9/97 (9%)

Query: 8   LKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKH 67
           LKC  C II        ++M H +S    +RP     + C  C     + G+++ H++ H
Sbjct: 117 LKCDICGII---CIGPNVLMVHKRS-HTGERP-----FQCNQCGASFTQKGNLLRHIKLH 167

Query: 68  TGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
           +G KP KC  CNY+C  + AL+ H + H+  K HKC 
Sbjct: 168 SGEKPFKCHLCNYACRRRDALTGHLRTHSVGKPHKCG 204

Transcription regulator of hematopoietic cell differentiation. Binds gamma-satellite DNA. Binds with higher affinity to gamma satellite A. Plays a role in the development of lymphocytes, B- and T-cells. Binds and activates the enhancer (delta-A element) of the CD3-delta gene. Repressor of the TDT (terminal deoxynucleotidyltransferase) gene during thymocyte differentiation. Regulates transcription through association with both HDAC-dependent and HDAC-independent complexes. Targets the 2 chromatin-remodeling complexes, NuRD and BAF (SWI/SNF), in a single complex (PYR complex), to the beta-globin locus in adult erythrocytes. Increases normal apoptosis in adult erythroid cells. Confers early temporal competence to retinal progenitor cells (RPCs).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
348511898	973	PREDICTED: RE1-silencing transcription f	0.713	0.104	0.306	2e-09
432961017	871	PREDICTED: RE1-silencing transcription f	0.713	0.117	0.306	4e-09
432962538	1911	PREDICTED: uncharacterized protein LOC10	0.657	0.049	0.336	4e-09
215820598	954	RE1-silencing transcription factor [Taki	0.713	0.106	0.306	5e-09
260787879	1012	hypothetical protein BRAFLDRAFT_89170 [B	0.342	0.048	0.466	5e-09
260822986	1148	hypothetical protein BRAFLDRAFT_71748 [B	0.559	0.069	0.4	8e-09
395823003	533	PREDICTED: zinc finger protein 397 [Otol	0.468	0.125	0.375	1e-08
237511654	855	hunchback transcription factor [Artemia	0.727	0.121	0.342	1e-08
297279056	636	PREDICTED: zinc finger protein 836-like,	0.580	0.130	0.336	2e-08
449682271	330	PREDICTED: zinc finger protein 480-like	0.615	0.266	0.353	2e-08

>gi|348511898|ref|XP_003443480.1| PREDICTED: RE1-silencing transcription factor A-like [Oreochromis niloticus]

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 4   DHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGH 63
           DH + KCT C           +   H +   +   P K +   C  C+Y + +  + I H
Sbjct: 271 DHRVFKCTLCPYT-------TVSQYHWRKHLRNHFPSKLHT--CSQCSYFSDRKSNYIQH 321

Query: 64  MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYH 114
           +R HTGV+P +C  C+YS S K+ L+ H + H+G +  KC +   +A   H
Sbjct: 322 IRTHTGVRPFQCPYCDYSSSQKTHLTRHMRTHSGERPFKCESCTYLAANQH 372

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432961017|ref|XP_004086534.1| PREDICTED: RE1-silencing transcription factor-like [Oryzias latipes]

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 4   DHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGH 63
           DH + KCT C           +   H +   +   P K +   C  C+Y + +  + I H
Sbjct: 249 DHRVFKCTLCTYT-------TVSQYHWRKHLRNHFPSKLHT--CSQCSYFSDRKSNYIQH 299

Query: 64  MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYH 114
           +R HTGV+P +C  C+YS S K+ L+ H + H+G +  KC +   +A   H
Sbjct: 300 IRTHTGVRPFQCVYCDYSSSQKTHLTRHMRTHSGERPFKCESCPYLAANQH 350

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432962538|ref|XP_004086719.1| PREDICTED: uncharacterized protein LOC101162913 [Oryzias latipes]

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 8   LKCTFCNIIFN--KLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMR 65
           L C  C+IIF+  K +D  + + H    +  KR  K+  +AC++C  H     D++ H +
Sbjct: 130 LHCVECHIIFSDHKSKDRHVKLKH--PVEYEKRNLKNALFACYVCDRHFTNSTDLMAHQK 187

Query: 66  KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
            HT  KP KC  C+ +    S L+ H+K H GL  + C
Sbjct: 188 AHTEKKPFKCPVCDQAFRRSSELTSHKKAHFGLFGYTC 225

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|215820598|ref|NP_001135958.1| RE1-silencing transcription factor [Takifugu rubripes] gi|167857755|gb|ACA03866.1| NRSF/REST [Takifugu rubripes]

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 4   DHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGH 63
           DH + KCT C           +   H +   +   P K +   C  C+Y + +  + I H
Sbjct: 252 DHRVFKCTLCPYT-------TVSQYHWRKHLRNHFPSKLHT--CSQCSYFSDRKSNYIQH 302

Query: 64  MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYH 114
           +R HTGV+P +C  C+YS S K+ L+ H + H+G +  KC +   +A   H
Sbjct: 303 IRTHTGVRPFQCLYCDYSSSQKTHLTRHMRTHSGERPFKCESCNYLAANQH 353

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260787879|ref|XP_002588979.1| hypothetical protein BRAFLDRAFT_89170 [Branchiostoma floridae] gi|229274151|gb|EEN44990.1| hypothetical protein BRAFLDRAFT_89170 [Branchiostoma floridae]

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 35/60 (58%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
           Y C  C Y T +  D++ HMR HTG KP KC  C+YS + KS L  H+  HTG K + C 
Sbjct: 801 YMCGECGYRTARKPDLMKHMRSHTGEKPYKCDQCDYSAARKSTLCQHKASHTGDKPYMCG 860

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260822986|ref|XP_002603964.1| hypothetical protein BRAFLDRAFT_71748 [Branchiostoma floridae] gi|229289289|gb|EEN59975.1| hypothetical protein BRAFLDRAFT_71748 [Branchiostoma floridae]

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 19  KLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSC 78
           +  DE  +  H K     K+P     Y C  C Y   +  ++  H+ KHTG KP  C  C
Sbjct: 158 RTADESTLSQHMKVHSGEKKP-----YKCDQCDYAAAQKCELDQHLPKHTGEKPYMCGEC 212

Query: 79  NYSCSTKSALSVHQKRHTGLKAHKC 103
            Y  S KS L  H KRHTG+K HKC
Sbjct: 213 GYRSSFKSGLYRHMKRHTGVKPHKC 237

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395823003|ref|XP_003784790.1| PREDICTED: zinc finger protein 397 [Otolemur garnettii]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 48/80 (60%)

Query: 25  LIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCST 84
           LI+T  KS +  K P +   Y C +C +  +++  +  H R HTG KP KC+ C  + S 
Sbjct: 264 LILTSTKSMRCQKLPPEERPYRCDVCEHSFKQYSSLTQHQRIHTGEKPYKCNQCGKAFSL 323

Query: 85  KSALSVHQKRHTGLKAHKCA 104
           +S L +HQ+ H+G KA++C+
Sbjct: 324 RSYLIIHQRIHSGEKAYECS 343

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|237511654|gb|ACQ99548.1| hunchback transcription factor [Artemia sinica]

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 8   LKCTFCNII-FNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRK 66
            KC  CN +   KL   E   TH K       P+K     C  C + T     +  HMR 
Sbjct: 410 FKCKQCNFVAVTKLNFWEHSRTHIK-------PEKMLQ--CTKCPFVTEYKHHLEYHMRN 460

Query: 67  HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIML 120
           H G KP KC+ C+YSC  KS L+ H K H+ +  ++CA+        H L++ L
Sbjct: 461 HFGSKPFKCNKCSYSCVNKSMLNSHMKSHSNIYQYRCADCTYATKYCHSLKLHL 514

Source: Artemia sinica

Species: Artemia sinica

Genus: Artemia

Family: Artemiidae

Order: Anostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|297279056|ref|XP_002801661.1| PREDICTED: zinc finger protein 836-like, partial [Macaca mulatta]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 15/98 (15%)

Query: 9   KCTFCNIIFNK---LQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMR 65
           KC  C   F++   L   +++ T  K C+            C +C    R++ D++ H R
Sbjct: 203 KCNECGKAFHRGSLLTIHQIVHTRGKPCQ------------CDVCGKIFRQNSDLVNHWR 250

Query: 66  KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
            HTG KP KC+ C  S S    L++HQ+ HTG K +KC
Sbjct: 251 SHTGEKPYKCNECGKSFSQSYNLAIHQRIHTGEKPYKC 288

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449682271|ref|XP_002161321.2| PREDICTED: zinc finger protein 480-like [Hydra magnipapillata]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 11/99 (11%)

Query: 7   ILKCTFCNIIFNKLQD-EELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMR 65
           ++KCT+C+ IFN  ++    + TH  + +KP        Y C  C Y +    +   H+R
Sbjct: 187 LIKCTYCDYIFNGRKNFASHMRTH--TGEKP--------YKCSYCEYRSSHKSNFTVHLR 236

Query: 66  KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
            HT  KP KC+ C Y C +K +L++H + HT +K +KCA
Sbjct: 237 NHTNEKPYKCTYCKYECKSKCSLTLHIRTHTNVKPYKCA 275

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
MGI|MGI:99181	594	Zfp37 "zinc finger protein 37"	0.594	0.143	0.397	2.1e-11
UNIPROTKB|F1SAJ8	534	ZNF397 "Uncharacterized protei	0.545	0.146	0.35	2.9e-11
UNIPROTKB|G3N2L1	419	G3N2L1 "Uncharacterized protei	0.622	0.212	0.381	6.4e-11
UNIPROTKB|Q8NF99	534	ZNF397 "Zinc finger protein 39	0.650	0.174	0.365	1.6e-10
UNIPROTKB|Q8TBZ5	544	ZNF502 "Zinc finger protein 50	0.601	0.158	0.389	1.7e-10
UNIPROTKB|F1MV06	539	ZNF502 "Uncharacterized protei	0.601	0.159	0.389	2.1e-10
UNIPROTKB|J9P245	846	ZNF624 "Uncharacterized protei	0.601	0.101	0.389	2.5e-10
UNIPROTKB|Q8N8J6	731	ZNF615 "Zinc finger protein 61	0.433	0.084	0.435	2.6e-10
UNIPROTKB|H9KV89	736	ZNF615 "Zinc finger protein 61	0.433	0.084	0.435	2.7e-10
UNIPROTKB|F1SRB1	522	ZNF502 "Uncharacterized protei	0.601	0.164	0.389	3.3e-10

MGI|MGI:99181 Zfp37 "zinc finger protein 37" [Mus musculus (taxid:10090)]

 Score = 166 (63.5 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 35/88 (39%), Positives = 49/88 (55%)

Query:    18 NKLQDEELIMTHCKSCKKP-KRPDKSYNYACFIC-TYHTRKHGDMIGHMRKHTGVKPLKC 75
             +K+Q  E   +HC++  KP K P     Y C  C    + K G ++ H R HTG KP +C
Sbjct:   227 DKIQTGEKRKSHCRTPSKPEKAPGSGKPYECNHCGKVLSHKQG-LLDHQRTHTGEKPYEC 285

Query:    76 SSCNYSCSTKSALSVHQKRHTGLKAHKC 103
             + C  + S KS L VHQ+ HTG K ++C
Sbjct:   286 NECGIAFSQKSHLVVHQRTHTGEKPYEC 313

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007281 "germ cell development" evidence=TAS

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=TAS

GO:0030154 "cell differentiation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1SAJ8 ZNF397 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 28/80 (35%), Positives = 48/80 (60%)

Query:    25 LIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCST 84
             ++ T+  +C+K   P +   Y C +C +  ++H  +  H R HTG KP KC+ C  + S 
Sbjct:   267 ILSTNSVTCQKV--PSEERPYTCDVCGHSFKQHSSLTQHQRTHTGEKPYKCNQCGKAFSL 324

Query:    85 KSALSVHQKRHTGLKAHKCA 104
             +S L +HQ+ H+G KA++C+
Sbjct:   325 RSYLIIHQRIHSGEKAYECS 344

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016032 "viral reproduction" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3N2L1 G3N2L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 37/97 (38%), Positives = 51/97 (52%)

Query:     9 KCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHT 68
             KC  C+I F  LQD EL  T C+     +  +K Y   C +C +  +K  ++  H R HT
Sbjct:   165 KCNECDITF--LQDSEL--TRCQRSHTGR--EKPYK--CDVCDHCFKKKYNLSIHQRSHT 216

Query:    69 GVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
             G KP KC  C    +  + L +HQ+ HTG K +KC N
Sbjct:   217 GNKPHKCDVCCQCFAQNTQLGIHQRIHTGEKLYKCNN 253

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8NF99 ZNF397 "Zinc finger protein 397" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 38/104 (36%), Positives = 56/104 (53%)

Query:    11 TFCNIIF-NK------LQDEE---LIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDM 60
             +F  +IF NK      L DE    LI+T   S    K P +   Y C +C +  ++H  +
Sbjct:   242 SFSQVIFTNKSLGKRDLYDEAERCLILT-TDSIMCQKVPPEERPYRCDVCGHSFKQHSSL 300

Query:    61 IGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
               H R HTG KP KC+ C  + S +S L +HQ+ H+G KA++C+
Sbjct:   301 TQHQRIHTGEKPYKCNQCGKAFSLRSYLIIHQRIHSGEKAYECS 344

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016032 "viral reproduction" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q8TBZ5 ZNF502 "Zinc finger protein 502" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 37/95 (38%), Positives = 48/95 (50%)

Query:     9 KCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHT 68
             KC  C   FN  Q+  LI  H +     ++P     Y C  C    RKH ++  H R HT
Sbjct:   268 KCNRCGKAFN--QNTHLI--HHQRIHTGEKP-----YICSECGSSFRKHSNLTQHQRIHT 318

Query:    69 GVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
             G KP KC  C  +  TK+ LS HQ+ H+G K +KC
Sbjct:   319 GEKPHKCDECGKTFQTKANLSQHQRIHSGEKPYKC 353

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MV06 ZNF502 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 37/95 (38%), Positives = 48/95 (50%)

Query:     9 KCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHT 68
             KC  C   F+  Q+  LI  H +     ++P     Y C  C    RKH ++  H R HT
Sbjct:   263 KCNRCGKAFS--QNTHLI--HHQRIHTGEKP-----YLCNECGSSFRKHSNLTQHQRIHT 313

Query:    69 GVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
             G KP KC  C  +  TK+ LS HQ+ HTG K +KC
Sbjct:   314 GEKPYKCDECGKTFHTKANLSQHQRIHTGEKPYKC 348

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P245 ZNF624 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 158 (60.7 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 37/95 (38%), Positives = 47/95 (49%)

Query:     9 KCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHT 68
             KCT C   F K       M + K  +K     K Y   C+ C    R    +I H R HT
Sbjct:   594 KCTDCERAFTK-------MVNLKEHQKIHTGVKPYK--CYDCEKSFRTKSYLIVHQRTHT 644

Query:    69 GVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
             G KP KC+ C  + +  S L+VHQ+RHTG K +KC
Sbjct:   645 GEKPYKCNECERAFTNTSQLTVHQRRHTGEKPYKC 679

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8N8J6 ZNF615 "Zinc finger protein 615" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query:    44 NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
             ++AC  C   + +  D+I H R HTG KP KCS C  + +TKS L+VHQ++HTG + + C
Sbjct:   651 SFACTECGKFSLRKNDLITHQRIHTGEKPYKCSDCGKAFTTKSGLNVHQRKHTGERPYGC 710

Query:   104 AN 105
             ++
Sbjct:   711 SD 712

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|H9KV89 ZNF615 "Zinc finger protein 615" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query:    44 NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
             ++AC  C   + +  D+I H R HTG KP KCS C  + +TKS L+VHQ++HTG + + C
Sbjct:   656 SFACTECGKFSLRKNDLITHQRIHTGEKPYKCSDCGKAFTTKSGLNVHQRKHTGERPYGC 715

Query:   104 AN 105
             ++
Sbjct:   716 SD 717

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1SRB1 ZNF502 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 37/95 (38%), Positives = 48/95 (50%)

Query:     9 KCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHT 68
             KC  C   F+  Q+  LI  H +     ++P     Y C  C    RKH ++  H R HT
Sbjct:   246 KCNRCGKAFS--QNTHLI--HHQRIHTGEKP-----YLCNECGSSFRKHSNLTQHQRIHT 296

Query:    69 GVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
             G KP KC  C  +  TK+ LS HQ+ HTG K +KC
Sbjct:   297 GEKPYKCDECAKTFHTKANLSQHQRIHTGEKPYKC 331

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG2462|consensus	279		99.94
KOG2462|consensus	279		99.92
KOG3608|consensus	467		99.57
KOG3576|consensus	267		99.55
KOG3576|consensus	267		99.52
KOG3623|consensus	1007		99.5
KOG3623|consensus	1007		99.5
KOG1074|consensus	958		99.49
KOG3608|consensus	467		99.33
KOG1074|consensus	958		99.23
PLN03086	567	PRLI-interacting factor K; Provisional	99.19
PHA00733	128	hypothetical protein	99.17
PHA02768	55	hypothetical protein; Provisional	99.01
PLN03086	567	PRLI-interacting factor K; Provisional	98.97
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.94
PHA00616	44	hypothetical protein	98.87
PHA02768	55	hypothetical protein; Provisional	98.62
PHA00733	128	hypothetical protein	98.61
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.28
PHA00616	44	hypothetical protein	98.23
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.22
PHA00732	79	hypothetical protein	98.16
KOG3993|consensus	500		98.16
KOG3993|consensus	500		98.11
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.02
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.01
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.98
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.69
PHA00732	79	hypothetical protein	97.64
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.48
smart00355	26	ZnF_C2H2 zinc finger.	97.43
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.37
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.34
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.11
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.95
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.92
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.91
PRK04860	160	hypothetical protein; Provisional	96.85
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.7
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.55
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.27
smart00355	26	ZnF_C2H2 zinc finger.	96.23
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.94
COG4049	65	Uncharacterized protein containing archaeal-type C	95.57
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.42
PRK04860	160	hypothetical protein; Provisional	95.39
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.07
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.42
COG5048	467	FOG: Zn-finger [General function prediction only]	92.59
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	91.64
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	91.43
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	90.57
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	90.56
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	89.86
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	88.84
COG1198	730	PriA Primosomal protein N' (replication factor Y)	88.66
PF15135	278	UPF0515: Uncharacterised protein UPF0515	88.54
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	88.1
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	87.7
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	86.19
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	86.14
KOG1146|consensus	1406		86.06
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	85.73
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	85.03
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	84.98
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	84.88
COG5048	467	FOG: Zn-finger [General function prediction only]	84.52
PF09845	131	DUF2072: Zn-ribbon containing protein (DUF2072); I	83.75
KOG2186|consensus	276		83.33
KOG1146|consensus	1406		83.12
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	83.02
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	83.01
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	82.64
KOG2893|consensus	341		81.8
KOG2231|consensus	669		81.76
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	81.55
PRK06266	178	transcription initiation factor E subunit alpha; V	81.47
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	81.03
PF15269	54	zf-C2H2_7: Zinc-finger	80.54

>KOG2462|consensus

Probab=99.94  E-value=5e-27  Score=154.61  Aligned_cols=119  Identities=25%  Similarity=0.462  Sum_probs=69.9

Q ss_pred             CCccccCCcchhhhccchh---hHHHhh--------hcccCCCCCC---------CCCCcceeccCCCCccCCcchHHHh
Q psy3948           4 DHTILKCTFCNIIFNKLQD---EELIMT--------HCKSCKKPKR---------PDKSYNYACFICTYHTRKHGDMIGH   63 (143)
Q Consensus         4 ~~~~~~C~~C~~~f~~~~~---~~~~~~--------~c~~c~~~~~---------~~~~~~~~c~~c~~~~~~~~~l~~h   63 (143)
                      ....|+|+.||+.+.+..+   |+..|-        .|+.|++.|.         .+..-+++|.+||+.|.....|+.|
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGH  206 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGH  206 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcc
Confidence            4567899999999866665   443332        3555555554         1223345555555555555555555


Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHH
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLED  122 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~  122 (143)
                      +++|+|++||.|+.|+++|...++|..|+++|.+.++|+|..|++.|+..|.|.+|.+.
T Consensus       207 iRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  207 IRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            55555555555555555555555555555555555555555555555555555555543

>KOG2462|consensus

Probab=99.92  E-value=8.2e-26  Score=148.91  Aligned_cols=105  Identities=20%  Similarity=0.285  Sum_probs=97.4

Q ss_pred             hcccCCCCCCCCC--------------CcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHH
Q psy3948          29 HCKSCKKPKRPDK--------------SYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR   94 (143)
Q Consensus        29 ~c~~c~~~~~~~~--------------~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~   94 (143)
                      .|..|++.+....              .+.+.|++||+.+.....|..|+++|+  .+++|..||+.|.+.+.|+.|+|+
T Consensus       132 ~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRT  209 (279)
T KOG2462|consen  132 KCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRT  209 (279)
T ss_pred             eccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhccccc
Confidence            6999999997433              567999999999999999999999998  588999999999999999999999


Q ss_pred             hcCCCceecccccccccchHHHHHHHHHHhcCCCcccceee
Q psy3948          95 HTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIAL  135 (143)
Q Consensus        95 h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~~~  135 (143)
                      |||||||.|+.|++.|.++|+|+-|+++|...+.|.|....
T Consensus       210 HTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~  250 (279)
T KOG2462|consen  210 HTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCG  250 (279)
T ss_pred             ccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchh
Confidence            99999999999999999999999999999999999999443

>KOG3608|consensus

Probab=99.57  E-value=2.1e-15  Score=103.10  Aligned_cols=139  Identities=19%  Similarity=0.415  Sum_probs=104.5

Q ss_pred             CCCCccccCCcchhhhccchh---hHHHhh-------hcccCCCCCCC---------CCCcceeccCCCCccCCcchHHH
Q psy3948           2 FVDHTILKCTFCNIIFNKLQD---EELIMT-------HCKSCKKPKRP---------DKSYNYACFICTYHTRKHGDMIG   62 (143)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~---~~~~~~-------~c~~c~~~~~~---------~~~~~~~c~~c~~~~~~~~~l~~   62 (143)
                      |+++|...|+.||..|.....   |.+..+       .|..|.+.|..         ..-..|+|+.|+......++|..
T Consensus       202 Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~  281 (467)
T KOG3608|consen  202 HSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTT  281 (467)
T ss_pred             cCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHH
Confidence            678899999999999966554   443322       47777777762         11234788888888888888888


Q ss_pred             hhh-hcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc--ccccccchHHHHHHHHHHh-cC--CCcccceeee
Q psy3948          63 HMR-KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN--VIIIAIMYHILEIMLEDIQ-GR--DHINVNIALT  136 (143)
Q Consensus        63 h~~-~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~--C~~~f~~~s~l~~h~~~~~-~~--~~~~~~~~~~  136 (143)
                      |++ .|...+||.|..|...+.....|++|...|. +..|.|..  |...|.+.-.+.+|.+.++ +.  .+|.|....+
T Consensus       282 H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr  360 (467)
T KOG3608|consen  282 HIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDR  360 (467)
T ss_pred             HHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchh
Confidence            865 4666788889888888888888998888776 67788876  8888888888888877555 44  4478887666


Q ss_pred             eeeee
Q psy3948         137 LQFSA  141 (143)
Q Consensus       137 ~~~~~  141 (143)
                      +.+++
T Consensus       361 ~ft~G  365 (467)
T KOG3608|consen  361 FFTSG  365 (467)
T ss_pred             hhccc
Confidence            66654

>KOG3576|consensus

Probab=99.55  E-value=1.1e-15  Score=97.37  Aligned_cols=82  Identities=23%  Similarity=0.412  Sum_probs=52.6

Q ss_pred             ceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHH
Q psy3948          44 NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus        44 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~  123 (143)
                      .|.|.+|++.|....-|..|+..|...+.+.|..||+.|...-.|..|.++|+|-+||+|..|++.|+.+-.|..|+++.
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kv  196 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKV  196 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHH
Confidence            46666666666666666666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             hc
Q psy3948         124 QG  125 (143)
Q Consensus       124 ~~  125 (143)
                      |+
T Consensus       197 hg  198 (267)
T KOG3576|consen  197 HG  198 (267)
T ss_pred             cC
Confidence            54

>KOG3576|consensus

Probab=99.52  E-value=6.2e-15  Score=93.91  Aligned_cols=116  Identities=22%  Similarity=0.342  Sum_probs=91.9

Q ss_pred             CccccCCcchhhhccchhhHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCC
Q psy3948           5 HTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCST   84 (143)
Q Consensus         5 ~~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~   84 (143)
                      ...|.|..|++.|....-..++. .|.        ..-+.+.|..||+.|.+.-.|..|.++|+|.+||.|..|+++|..
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~-kch--------~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq  185 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHL-KCH--------SDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ  185 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHh-hhc--------cHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh
Confidence            45678888998885443322221 121        122446799999999999999999999999999999999999999


Q ss_pred             hHHHHHHHH-Hhc----------CCCceecccccccccchHHHHHHHHHHhcCCCc
Q psy3948          85 KSALSVHQK-RHT----------GLKAHKCANVIIIAIMYHILEIMLEDIQGRDHI  129 (143)
Q Consensus        85 ~~~l~~h~~-~h~----------~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~  129 (143)
                      .-+|..|.+ .|.          .++-|.|..||.+-.....+..|++.|+..-++
T Consensus       186 rcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spa  241 (267)
T KOG3576|consen  186 RCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPA  241 (267)
T ss_pred             hccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHH
Confidence            999999986 342          246799999999999999999999999876553

>KOG3623|consensus

Probab=99.50  E-value=3.7e-15  Score=109.90  Aligned_cols=80  Identities=23%  Similarity=0.421  Sum_probs=76.5

Q ss_pred             CcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHH
Q psy3948          42 SYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLE  121 (143)
Q Consensus        42 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~  121 (143)
                      +-.|.|..|+++|...++|.+|...|+|.+||.|..|.++|..+-.|..|.|.|.|||||+|+.|++.|+.+..+..|+.
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999964

>KOG3623|consensus

Probab=99.50  E-value=4.1e-15  Score=109.69  Aligned_cols=109  Identities=22%  Similarity=0.471  Sum_probs=88.2

Q ss_pred             ccccCCcchhhhccchhhHHHhhhcccCCCCCCCCC-CcceeccCCCCccCCcchHHHhhhhcCC-------------CC
Q psy3948           6 TILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDK-SYNYACFICTYHTRKHGDMIGHMRKHTG-------------VK   71 (143)
Q Consensus         6 ~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~-~~~~~c~~c~~~~~~~~~l~~h~~~~~~-------------~~   71 (143)
                      ....|++|++++.++...+.+..        +++.+ +..|.|..|..+|.+...|..|+..|..             .+
T Consensus       209 qlltcpycdrgykrltslkeHik--------yrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lR  280 (1007)
T KOG3623|consen  209 QLLTCPYCDRGYKRLTSLKEHIK--------YRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLR  280 (1007)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHH--------HHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhc
Confidence            35689999999876665332211        11112 2347899999999999999999887653             34


Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHH
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLED  122 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~  122 (143)
                      .|.|..|+++|..+-.|..|+|+|.|||||.|+.|++.|+.+..+..|+..
T Consensus       281 KFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  281 KFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             cccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            599999999999999999999999999999999999999999999999764

>KOG1074|consensus

Probab=99.49  E-value=1.1e-14  Score=108.77  Aligned_cols=59  Identities=24%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcc
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHIN  130 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~  130 (143)
                      |-.|..|.+.+.=...|+-|.++|+|||||+|..||+.|+++.+|+.|+-+|....+++
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R  663 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPAR  663 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCcccc
Confidence            45677888888888999999999999999999999999999999999999888776654

>KOG3608|consensus

Probab=99.33  E-value=2.8e-12  Score=88.09  Aligned_cols=124  Identities=19%  Similarity=0.315  Sum_probs=101.5

Q ss_pred             CCccccCCcchhhhccchh---hHH-Hhh--hcccCCCCCC------------CCCCcceeccCCCCccCCcchHHHhhh
Q psy3948           4 DHTILKCTFCNIIFNKLQD---EEL-IMT--HCKSCKKPKR------------PDKSYNYACFICTYHTRKHGDMIGHMR   65 (143)
Q Consensus         4 ~~~~~~C~~C~~~f~~~~~---~~~-~~~--~c~~c~~~~~------------~~~~~~~~c~~c~~~~~~~~~l~~h~~   65 (143)
                      ...+|.|..|-+.|.++.-   |++ +..  .|+.|..+-+            +.+.++|+|..|+..+...+.|..|..
T Consensus       234 ~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~  313 (467)
T KOG3608|consen  234 NTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQ  313 (467)
T ss_pred             cCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHH
Confidence            4568999999999977655   333 332  6888887654            677899999999999999999999999


Q ss_pred             hcCCCCCccCCC--CCCCCCChHHHHHHHHH-hcC--CCceecccccccccchHHHHHHHHHHhcCCC
Q psy3948          66 KHTGVKPLKCSS--CNYSCSTKSALSVHQKR-HTG--LKAHKCANVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus        66 ~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~-h~~--e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      +|. ...|.|..  |..++.+...+..|.+. |.|  +.+|.|..|++.|++-.+|..|+...|+=+.
T Consensus       314 ~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~  380 (467)
T KOG3608|consen  314 VHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRL  380 (467)
T ss_pred             hcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccC
Confidence            888 55688887  98899999999999874 445  4569999999999999999999887775443

>KOG1074|consensus

Probab=99.23  E-value=7.1e-12  Score=94.05  Aligned_cols=60  Identities=20%  Similarity=0.224  Sum_probs=55.7

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          73 LKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        73 ~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      ..|.+|++.|.....|+.|+++|+++|||.|..|++.|+.+.+|+.|+.+|....+....
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~srr  939 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSRR  939 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCccC
Confidence            678999999999999999999999999999999999999999999999999977766544

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.19  E-value=8.9e-11  Score=86.43  Aligned_cols=126  Identities=17%  Similarity=0.293  Sum_probs=93.9

Q ss_pred             ccCCcchhhhccchh--hHHHhh----hcc--cCCCCCC-CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCC
Q psy3948           8 LKCTFCNIIFNKLQD--EELIMT----HCK--SCKKPKR-PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSC   78 (143)
Q Consensus         8 ~~C~~C~~~f~~~~~--~~~~~~----~c~--~c~~~~~-~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   78 (143)
                      -.|+.|++......-  |...-.    .|+  .|+..|. ...+..+.|+.|+..|. ...+..|...++  .++.|+ |
T Consensus       408 V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-C  483 (567)
T PLN03086        408 VECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-C  483 (567)
T ss_pred             EECCCCCCccchhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-C
Confidence            469999886433222  322211    476  4888875 34456688999999996 567899988874  789999 9


Q ss_pred             CCCCCChHHHHHHHHHhcCCCceeccccccccc----------chHHHHHHHHHHhcCCCcccc-eeeeeee
Q psy3948          79 NYSCSTKSALSVHQKRHTGLKAHKCANVIIIAI----------MYHILEIMLEDIQGRDHINVN-IALTLQF  139 (143)
Q Consensus        79 ~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~----------~~s~l~~h~~~~~~~~~~~~~-~~~~~~~  139 (143)
                      +..+ ....|..|+.+|..++++.|..|++.|.          ..+.|..|... .+.+++.|. +...+..
T Consensus       484 g~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~-CG~rt~~C~~Cgk~Vrl  553 (567)
T PLN03086        484 GVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-CGSRTAPCDSCGRSVML  553 (567)
T ss_pred             CCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh-cCCcceEccccCCeeee
Confidence            9654 6689999999999999999999999985          24689999887 489999998 4444443

>PHA00733 hypothetical protein

Probab=99.17  E-value=3e-11  Score=73.57  Aligned_cols=82  Identities=10%  Similarity=0.001  Sum_probs=65.1

Q ss_pred             CcceeccCCCCccCCcchHHHh--h---hhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHH
Q psy3948          42 SYNYACFICTYHTRKHGDMIGH--M---RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHIL  116 (143)
Q Consensus        42 ~~~~~c~~c~~~~~~~~~l~~h--~---~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l  116 (143)
                      .+.+.|.+|...+.+...|..+  +   ..+.+.+||.|..|++.|.....|..|++.+  +.+|.|..|++.|...+.|
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL  115 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST  115 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence            3556778887777666555433  1   1234478999999999999999999999876  4579999999999999999


Q ss_pred             HHHHHHHhc
Q psy3948         117 EIMLEDIQG  125 (143)
Q Consensus       117 ~~h~~~~~~  125 (143)
                      ..|+...|+
T Consensus       116 ~~H~~~~h~  124 (128)
T PHA00733        116 LDHVCKKHN  124 (128)
T ss_pred             HHHHHHhcC
Confidence            999988774

>PHA02768 hypothetical protein; Provisional

Probab=99.01  E-value=1.5e-10  Score=59.15  Aligned_cols=44  Identities=16%  Similarity=0.256  Sum_probs=38.5

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHH
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILE  117 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~  117 (143)
                      .|.|+.|++.|...++|..|+++|+  ++|+|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            4789999999999999999999988  6899999999998877765

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.97  E-value=2.2e-09  Score=79.27  Aligned_cols=110  Identities=15%  Similarity=0.336  Sum_probs=78.7

Q ss_pred             cCCc--chhhhccchhhHHHhhhcccCCCCCCC--------CCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCC
Q psy3948           9 KCTF--CNIIFNKLQDEELIMTHCKSCKKPKRP--------DKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSC   78 (143)
Q Consensus         9 ~C~~--C~~~f~~~~~~~~~~~~c~~c~~~~~~--------~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   78 (143)
                      .|+.  |+.+|....-  ..|..|+.|++.|..        .-..++.|+ ||..+ ....|..|+..|...+++.|..|
T Consensus       435 ~Cp~~~Cg~v~~r~el--~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC  510 (567)
T PLN03086        435 VCPHDGCGIVLRVEEA--KNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFC  510 (567)
T ss_pred             eCCcccccceeecccc--ccCccCCCCCCccchHHHHHHHHhcCCCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCC
Confidence            4653  7776632221  111257777776651        012668899 99765 55789999999999999999999


Q ss_pred             CCCCCC----------hHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHh
Q psy3948          79 NYSCST----------KSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        79 ~~~f~~----------~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      +..+..          ...|..|.... |.+++.|..||+.+..+ +|..|+...|
T Consensus       511 ~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h  564 (567)
T PLN03086        511 GDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVH  564 (567)
T ss_pred             CCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhh
Confidence            987742          34788888775 89999999999988855 6888876554

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.94  E-value=8.1e-10  Score=48.50  Aligned_cols=26  Identities=31%  Similarity=0.277  Sum_probs=23.4

Q ss_pred             HHHHHHHHhcCCCceecccccccccc
Q psy3948          87 ALSVHQKRHTGLKAHKCANVIIIAIM  112 (143)
Q Consensus        87 ~l~~h~~~h~~e~~~~C~~C~~~f~~  112 (143)
                      +|..|+++|++++||.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47889999999999999999999863

...

>PHA00616 hypothetical protein

Probab=98.87  E-value=1.3e-09  Score=53.11  Aligned_cols=33  Identities=9%  Similarity=0.045  Sum_probs=30.9

Q ss_pred             ceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      ||+|+.||++|...++|.+|+++||+++++.+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            689999999999999999999999999998776

>PHA02768 hypothetical protein; Provisional

Probab=98.62  E-value=1.5e-08  Score=51.79  Aligned_cols=42  Identities=36%  Similarity=0.551  Sum_probs=36.7

Q ss_pred             eeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHH
Q psy3948          45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSAL   88 (143)
Q Consensus        45 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l   88 (143)
                      |+|+.||+.|...+.|..|++.|+  +++.|..|++.|...+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            689999999999999999999998  688999999988866544

>PHA00733 hypothetical protein

Probab=98.61  E-value=8.6e-08  Score=58.46  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=59.4

Q ss_pred             CccccCCcchhhhccchhhHHH--hhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCC
Q psy3948           5 HTILKCTFCNIIFNKLQDEELI--MTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSC   82 (143)
Q Consensus         5 ~~~~~C~~C~~~f~~~~~~~~~--~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   82 (143)
                      .+.++|..|+..|.........  ..      +--...+..+|.|+.||+.|.....|..|++.+  ..++.|..|++.|
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~------~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F  109 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLY------KLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEF  109 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHH------hhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCcc
Confidence            4567777777766443321000  00      000134467899999999999999999998866  3578999999999


Q ss_pred             CChHHHHHHHHHhc
Q psy3948          83 STKSALSVHQKRHT   96 (143)
Q Consensus        83 ~~~~~l~~h~~~h~   96 (143)
                      .....|..|+....
T Consensus       110 ~~~~sL~~H~~~~h  123 (128)
T PHA00733        110 RNTDSTLDHVCKKH  123 (128)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999987543

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.28  E-value=8.8e-07  Score=37.49  Aligned_cols=23  Identities=13%  Similarity=-0.096  Sum_probs=20.9

Q ss_pred             eecccccccccchHHHHHHHHHH
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~  123 (143)
                      |.|+.|++.|.+.+.|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00616 hypothetical protein

Probab=98.23  E-value=6.2e-07  Score=43.77  Aligned_cols=33  Identities=12%  Similarity=0.094  Sum_probs=22.8

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      ||.|+.||+.|.....+..|++.|+|++++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            456777777777777777777777777766654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.22  E-value=4.8e-07  Score=39.54  Aligned_cols=25  Identities=52%  Similarity=0.897  Sum_probs=22.2

Q ss_pred             hHHHhhhhcCCCCCccCCCCCCCCC
Q psy3948          59 DMIGHMRKHTGVKPLKCSSCNYSCS   83 (143)
Q Consensus        59 ~l~~h~~~~~~~~~~~c~~c~~~f~   83 (143)
                      +|..|++.|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            3778999999999999999998875

...

>PHA00732 hypothetical protein

Probab=98.16  E-value=1.4e-06  Score=48.53  Aligned_cols=42  Identities=29%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             ccCCCCCCCCCChHHHHHHHH-HhcCCCceecccccccccchHHHHHHH
Q psy3948          73 LKCSSCNYSCSTKSALSVHQK-RHTGLKAHKCANVIIIAIMYHILEIML  120 (143)
Q Consensus        73 ~~c~~c~~~f~~~~~l~~h~~-~h~~e~~~~C~~C~~~f~~~s~l~~h~  120 (143)
                      |.|..|++.|.+...|..|++ .|.   ++.|+.|++.|.   .|..|.
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~   44 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHF   44 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhh
Confidence            455555555555555555554 233   235666666555   244444

>KOG3993|consensus

Probab=98.16  E-value=5.7e-07  Score=63.72  Aligned_cols=120  Identities=11%  Similarity=0.074  Sum_probs=71.8

Q ss_pred             cccCCcchhhhccchh---hHHHhhhcccCC-------C--------------CCCCCCCcceeccCCCCccCCcchHHH
Q psy3948           7 ILKCTFCNIIFNKLQD---EELIMTHCKSCK-------K--------------PKRPDKSYNYACFICTYHTRKHGDMIG   62 (143)
Q Consensus         7 ~~~C~~C~~~f~~~~~---~~~~~~~c~~c~-------~--------------~~~~~~~~~~~c~~c~~~~~~~~~l~~   62 (143)
                      -|.|++|+|+|.--.+   |.|+|-.=..-.       +              +-....+..|.|.+|++.|.....|..
T Consensus       295 EYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrK  374 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRK  374 (500)
T ss_pred             eecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHH
Confidence            4789999999966555   766654000000       0              000122347999999999999999999


Q ss_pred             hhhhcCCCCC----------------------------------------------ccCCCCCCCCCChHHHHHHHHHhc
Q psy3948          63 HMRKHTGVKP----------------------------------------------LKCSSCNYSCSTKSALSVHQKRHT   96 (143)
Q Consensus        63 h~~~~~~~~~----------------------------------------------~~c~~c~~~f~~~~~l~~h~~~h~   96 (143)
                      |+.+|.....                                              ..++.++..+.++..-..+.+...
T Consensus       375 Hqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~  454 (500)
T KOG3993|consen  375 HQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGI  454 (500)
T ss_pred             hHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccc
Confidence            9765543100                                              011112222222222222222222


Q ss_pred             CCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          97 GLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        97 ~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      .+..|.|..|...|.++.+|.+|+...|-.
T Consensus       455 ~~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  455 AEQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             hhhccccccchHhhhcCcchHhHhhhcChH
Confidence            234588999999999999999999887754

>KOG3993|consensus

Probab=98.11  E-value=8e-07  Score=63.02  Aligned_cols=85  Identities=12%  Similarity=0.005  Sum_probs=52.4

Q ss_pred             ceeccCCCCccCCcchHHHhhhhcCCCCCccCCC--CCCCCCChHHHHHH-HHHh--cCCCceecccccccccchHHHHH
Q psy3948          44 NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS--CNYSCSTKSALSVH-QKRH--TGLKAHKCANVIIIAIMYHILEI  118 (143)
Q Consensus        44 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~f~~~~~l~~h-~~~h--~~e~~~~C~~C~~~f~~~s~l~~  118 (143)
                      -|+|++|++.|.-..+|..|+++|.-...-.-..  -.+.-...-.+.+. .+..  ..+-.|.|..|++.|.+...|++
T Consensus       295 EYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrK  374 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRK  374 (500)
T ss_pred             eecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHH
Confidence            3889999999999999999988886532211000  00000000000000 0100  12347999999999999999999


Q ss_pred             HHHHHhcCCC
Q psy3948         119 MLEDIQGRDH  128 (143)
Q Consensus       119 h~~~~~~~~~  128 (143)
                      |+..|+...-
T Consensus       375 Hqlthq~~~~  384 (500)
T KOG3993|consen  375 HQLTHQRAPL  384 (500)
T ss_pred             hHHhhhcccc
Confidence            9999885543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.02  E-value=1.8e-05  Score=40.94  Aligned_cols=50  Identities=20%  Similarity=0.224  Sum_probs=37.2

Q ss_pred             ccCCCCCCCCCChHHHHHHHH-HhcCC-CceecccccccccchHHHHHHHHHHhc
Q psy3948          73 LKCSSCNYSCSTKSALSVHQK-RHTGL-KAHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus        73 ~~c~~c~~~f~~~~~l~~h~~-~h~~e-~~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      |.|+.|++ ..+...|..|.. .|..+ +.+.|+.|...+.  .+|..|+...|+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            67888888 566778888865 45443 4688999998654  489999887763

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.01  E-value=6.4e-06  Score=34.92  Aligned_cols=24  Identities=8%  Similarity=-0.076  Sum_probs=19.5

Q ss_pred             eecccccccccchHHHHHHHHHHh
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      |.|+.|++.|.+...|..|++.++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999998775

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.98  E-value=3e-06  Score=37.31  Aligned_cols=26  Identities=8%  Similarity=-0.064  Sum_probs=22.6

Q ss_pred             ceecccccccccchHHHHHHHHHHhc
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      ||.|..|++.|.+.+.|..|++.|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999877653

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.69  E-value=5.8e-05  Score=37.74  Aligned_cols=33  Identities=12%  Similarity=-0.024  Sum_probs=23.8

Q ss_pred             cCCCceecccccccccchHHHHHHHHHHhcCCC
Q psy3948          96 TGLKAHKCANVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus        96 ~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      ..+.|-.|+.|+..+.++-+|++|++..|..++
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            346788999999999999999999999887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PHA00732 hypothetical protein

Probab=97.64  E-value=4.5e-05  Score=42.51  Aligned_cols=46  Identities=33%  Similarity=0.538  Sum_probs=34.4

Q ss_pred             ceeccCCCCccCCcchHHHhhhh-cCCCCCccCCCCCCCCCChHHHHHHHHHh
Q psy3948          44 NYACFICTYHTRKHGDMIGHMRK-HTGVKPLKCSSCNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        44 ~~~c~~c~~~~~~~~~l~~h~~~-~~~~~~~~c~~c~~~f~~~~~l~~h~~~h   95 (143)
                      +|.|..|++.|.....|..|++. |.   ++.|+.|++.|.+   +..|..+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~~---l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYRR---LNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeCC---hhhhhccc
Confidence            36788999999988889888873 54   3579999988874   66666543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.48  E-value=0.00016  Score=30.68  Aligned_cols=24  Identities=17%  Similarity=0.102  Sum_probs=19.5

Q ss_pred             eecccccccccchHHHHHHHHHHhc
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      |.|..|+.... .+.|.+|++.+++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            78999999998 9999999998874

>smart00355 ZnF_C2H2 zinc finger

Probab=97.43  E-value=0.00013  Score=31.23  Aligned_cols=24  Identities=8%  Similarity=0.044  Sum_probs=20.5

Q ss_pred             eecccccccccchHHHHHHHHHHh
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      |.|..|++.|...+.|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            578899999999999999988554

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.37  E-value=8.9e-05  Score=31.11  Aligned_cols=20  Identities=30%  Similarity=0.584  Sum_probs=10.2

Q ss_pred             eccCCCCccCCcchHHHhhh
Q psy3948          46 ACFICTYHTRKHGDMIGHMR   65 (143)
Q Consensus        46 ~c~~c~~~~~~~~~l~~h~~   65 (143)
                      .|+.|++.|.....|..|++
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    2 KCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHh
Confidence            45555555555555555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.34  E-value=0.00019  Score=41.56  Aligned_cols=78  Identities=13%  Similarity=0.205  Sum_probs=23.2

Q ss_pred             eccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHH-h
Q psy3948          46 ACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDI-Q  124 (143)
Q Consensus        46 ~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~-~  124 (143)
                      +|..|+..|.+...+..|+....+... .   ....+.....+..+.+.-. ...+.|..|++.|.+...|..|++.+ |
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~-~---~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~~H   75 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDI-P---DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSKHH   75 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTT
T ss_pred             Ccccccccccccccccccccccccccc-c---ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCccC
Confidence            377888888888888888754443211 1   0011112222222222211 22689999999999999999999965 4


Q ss_pred             cCCC
Q psy3948         125 GRDH  128 (143)
Q Consensus       125 ~~~~  128 (143)
                      ....
T Consensus        76 ~~~~   79 (100)
T PF12756_consen   76 KKRN   79 (100)
T ss_dssp             TC-S
T ss_pred             CCcc
Confidence            4433

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.11  E-value=0.00099  Score=34.32  Aligned_cols=48  Identities=19%  Similarity=0.453  Sum_probs=31.1

Q ss_pred             eeccCCCCccCCcchHHHhhh-hcCCC-CCccCCCCCCCCCChHHHHHHHHHh
Q psy3948          45 YACFICTYHTRKHGDMIGHMR-KHTGV-KPLKCSSCNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        45 ~~c~~c~~~~~~~~~l~~h~~-~~~~~-~~~~c~~c~~~f~~~~~l~~h~~~h   95 (143)
                      |.|+.|++ -.+...|..|.. .|..+ +.+.|++|...+.  .+|..|+..+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ   52 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence            67888888 455667777744 34443 4578888886433  4777777654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.95  E-value=0.00049  Score=29.99  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=12.0

Q ss_pred             eeccCCCCccCCcchHHHhhhhc
Q psy3948          45 YACFICTYHTRKHGDMIGHMRKH   67 (143)
Q Consensus        45 ~~c~~c~~~~~~~~~l~~h~~~~   67 (143)
                      |.|..|++.|.+...|..|++.|
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCccCCccCChhHHHHHhHHh
Confidence            45555555555555555554443

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.92  E-value=0.0006  Score=29.11  Aligned_cols=23  Identities=13%  Similarity=-0.074  Sum_probs=19.6

Q ss_pred             eecccccccccchHHHHHHHHHH
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~  123 (143)
                      |.|..|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67899999999999999998643

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.91  E-value=0.00027  Score=48.91  Aligned_cols=52  Identities=21%  Similarity=0.226  Sum_probs=38.5

Q ss_pred             CCCccCCC--CCCCCCChHHHHHHHHHhc-------------------CCCceecccccccccchHHHHHHHH
Q psy3948          70 VKPLKCSS--CNYSCSTKSALSVHQKRHT-------------------GLKAHKCANVIIIAIMYHILEIMLE  121 (143)
Q Consensus        70 ~~~~~c~~--c~~~f~~~~~l~~h~~~h~-------------------~e~~~~C~~C~~~f~~~s~l~~h~~  121 (143)
                      ++||.|++  |.+.|.....|..|+....                   ..|||.|+.|++.+.....|+=|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            47777776  6677777777777764211                   2489999999999999888887743

>PRK04860 hypothetical protein; Provisional

Probab=96.85  E-value=0.00076  Score=42.75  Aligned_cols=37  Identities=16%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccc
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIM  112 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~  112 (143)
                      +|.|. |+.   ....+..|.++++++++|.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            35554 543   44445555566666666666666655543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.70  E-value=0.0017  Score=27.08  Aligned_cols=21  Identities=33%  Similarity=0.624  Sum_probs=9.5

Q ss_pred             cCCCCCCCCCChHHHHHHHHH
Q psy3948          74 KCSSCNYSCSTKSALSVHQKR   94 (143)
Q Consensus        74 ~c~~c~~~f~~~~~l~~h~~~   94 (143)
                      .|+.|+..|.+...|..|+..
T Consensus         2 ~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    2 QCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             E-SSTS-EESSHHHHHHHHHH
T ss_pred             CCcCCCCcCCcHHHHHHHHHh
Confidence            444555555555555555443

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.55  E-value=0.0015  Score=45.37  Aligned_cols=19  Identities=26%  Similarity=0.574  Sum_probs=14.4

Q ss_pred             CCccccCCc--chhhhccchh
Q psy3948           4 DHTILKCTF--CNIIFNKLQD   22 (143)
Q Consensus         4 ~~~~~~C~~--C~~~f~~~~~   22 (143)
                      +.|||+|+.  |+|.+....-
T Consensus       346 d~KpykCpV~gC~K~YknqnG  366 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNG  366 (423)
T ss_pred             cCceecCCCCCchhhhccccc
Confidence            349999998  9998865443

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.27  E-value=0.00066  Score=29.67  Aligned_cols=22  Identities=9%  Similarity=-0.002  Sum_probs=18.8

Q ss_pred             eecccccccccchHHHHHHHHH
Q psy3948         101 HKCANVIIIAIMYHILEIMLED  122 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~  122 (143)
                      |.|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6799999999999999988763

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.23  E-value=0.0075  Score=25.34  Aligned_cols=22  Identities=36%  Similarity=0.726  Sum_probs=13.4

Q ss_pred             cCCCCCCCCCChHHHHHHHHHh
Q psy3948          74 KCSSCNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        74 ~c~~c~~~f~~~~~l~~h~~~h   95 (143)
                      .|..|+..|.....+..|++.|
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHHh
Confidence            4566666666666666666544

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.94  E-value=0.0078  Score=25.75  Aligned_cols=21  Identities=14%  Similarity=-0.210  Sum_probs=15.8

Q ss_pred             eecccccccccchHHHHHHHHH
Q psy3948         101 HKCANVIIIAIMYHILEIMLED  122 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~  122 (143)
                      ..|+.||+.| ..+.|.+|++.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3688888888 57778888664

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=95.57  E-value=0.01  Score=30.31  Aligned_cols=32  Identities=9%  Similarity=0.087  Sum_probs=27.1

Q ss_pred             hcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          95 HTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        95 h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      -.||--+.|+-||..|..+.+..+|+...|+-
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~   43 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGW   43 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence            34677789999999999999999999877753

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.42  E-value=0.019  Score=28.86  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=17.4

Q ss_pred             CCCCCccCCCCCCCCCChHHHHHHHHHhcCCCc
Q psy3948          68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKA  100 (143)
Q Consensus        68 ~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~  100 (143)
                      ....|..|+.|+..+.+.-+|..|+....+.+|
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            344566777777777777777777765555444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=95.39  E-value=0.017  Score=36.71  Aligned_cols=36  Identities=14%  Similarity=0.119  Sum_probs=30.4

Q ss_pred             ceecccccccccchHHHHHHHHHHhcCCCcccc-eeeeeee
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQGRDHINVN-IALTLQF  139 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~-~~~~~~~  139 (143)
                      +|.|. |+.   ....+.+|.+++.++.+|.|+ +...+.+
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            69998 997   678899999999999999997 6555544

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.07  E-value=0.018  Score=26.47  Aligned_cols=22  Identities=14%  Similarity=0.033  Sum_probs=19.5

Q ss_pred             ceecccccccccchHHHHHHHH
Q psy3948         100 AHKCANVIIIAIMYHILEIMLE  121 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~  121 (143)
                      +|.|..|+..|.+...+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            5789999999999999999976

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.42  E-value=0.04  Score=31.61  Aligned_cols=24  Identities=25%  Similarity=0.639  Sum_probs=17.4

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHh
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h   95 (143)
                      .+.|..|+..|.+...|..|++.+
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCc
Confidence            567888888888888888887754

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=92.59  E-value=0.021  Score=41.36  Aligned_cols=62  Identities=23%  Similarity=0.255  Sum_probs=53.5

Q ss_pred             CCccCCCCCCCCCChHHHHHHHH--HhcCC--Cceecc--cccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQK--RHTGL--KAHKCA--NVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~--~h~~e--~~~~C~--~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      .++.+..|...|.....+..|.+  .|.++  +++.|+  .|++.|.+...+..|...|.+..++.+.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            35778888889999999999998  79999  999999  7999999999999999999888765544

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=91.64  E-value=0.22  Score=25.93  Aligned_cols=9  Identities=11%  Similarity=0.360  Sum_probs=5.0

Q ss_pred             Cceeccccc
Q psy3948          99 KAHKCANVI  107 (143)
Q Consensus        99 ~~~~C~~C~  107 (143)
                      .+|.|+.||
T Consensus        49 ~~Y~Cp~CG   57 (61)
T COG2888          49 NPYRCPKCG   57 (61)
T ss_pred             CceECCCcC
Confidence            455555555

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=91.43  E-value=0.24  Score=20.91  Aligned_cols=10  Identities=20%  Similarity=0.660  Sum_probs=6.5

Q ss_pred             CcceeccCCC
Q psy3948          42 SYNYACFICT   51 (143)
Q Consensus        42 ~~~~~c~~c~   51 (143)
                      ...|.|+.||
T Consensus        14 ~v~f~CPnCG   23 (24)
T PF07754_consen   14 AVPFPCPNCG   23 (24)
T ss_pred             CceEeCCCCC
Confidence            3457777776

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=90.57  E-value=0.2  Score=23.35  Aligned_cols=11  Identities=18%  Similarity=0.295  Sum_probs=5.8

Q ss_pred             ceeccCCCCcc
Q psy3948          44 NYACFICTYHT   54 (143)
Q Consensus        44 ~~~c~~c~~~~   54 (143)
                      ..+|+.|+..|
T Consensus        25 ~v~C~~C~~~f   35 (36)
T PF13717_consen   25 KVRCSKCGHVF   35 (36)
T ss_pred             EEECCCCCCEe
Confidence            34555555544

>TIGR00622 ssl1 transcription factor ssl1

Probab=90.56  E-value=0.6  Score=27.82  Aligned_cols=87  Identities=14%  Similarity=0.139  Sum_probs=44.6

Q ss_pred             ccccCCcchhhhccchhhHHHhhhcccCCCCCC----CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCC
Q psy3948           6 TILKCTFCNIIFNKLQDEELIMTHCKSCKKPKR----PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYS   81 (143)
Q Consensus         6 ~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~----~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~   81 (143)
                      -|-.|+.||.+..+.-+..|... --..-+.|.    ......-.|-.|...|+.......-  .......|.|+.|...
T Consensus        14 LP~~CpiCgLtLVss~HLARSyH-HLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~--~~~~~~~y~C~~C~~~   90 (112)
T TIGR00622        14 LPVECPICGLTLILSTHLARSYH-HLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFD--ELKDSHRYVCAVCKNV   90 (112)
T ss_pred             CCCcCCcCCCEEeccchHHHhhh-ccCCCcccccccccccCCCCcccCcCCCCCCccccccc--ccccccceeCCCCCCc
Confidence            35678888887655555333211 000011111    0011112366777776654211100  0122346889889888


Q ss_pred             CCChHHHHHHHHHh
Q psy3948          82 CSTKSALSVHQKRH   95 (143)
Q Consensus        82 f~~~~~l~~h~~~h   95 (143)
                      |.-.-+...|...|
T Consensus        91 FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        91 FCVDCDVFVHESLH  104 (112)
T ss_pred             cccccchhhhhhcc
Confidence            88888888887665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.86  E-value=0.44  Score=23.14  Aligned_cols=28  Identities=18%  Similarity=0.094  Sum_probs=17.6

Q ss_pred             CCCceecccccccccch----HHHHHHHHHHh
Q psy3948          97 GLKAHKCANVIIIAIMY----HILEIMLEDIQ  124 (143)
Q Consensus        97 ~e~~~~C~~C~~~f~~~----s~l~~h~~~~~  124 (143)
                      +.....|..|++.+...    +.|.+|++..+
T Consensus        13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             CSS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             CcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            44557899999988774    88999986543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=88.84  E-value=0.3  Score=22.92  Aligned_cols=10  Identities=20%  Similarity=0.265  Sum_probs=4.9

Q ss_pred             eeccCCCCcc
Q psy3948          45 YACFICTYHT   54 (143)
Q Consensus        45 ~~c~~c~~~~   54 (143)
                      ..|+.|+..|
T Consensus        26 vrC~~C~~~f   35 (37)
T PF13719_consen   26 VRCPKCGHVF   35 (37)
T ss_pred             EECCCCCcEe
Confidence            4455555444

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=88.66  E-value=0.46  Score=37.53  Aligned_cols=10  Identities=30%  Similarity=0.869  Sum_probs=6.1

Q ss_pred             CCccCCCCCC
Q psy3948          71 KPLKCSSCNY   80 (143)
Q Consensus        71 ~~~~c~~c~~   80 (143)
                      .|..|+.|+.
T Consensus       474 ~p~~Cp~Cgs  483 (730)
T COG1198         474 IPQSCPECGS  483 (730)
T ss_pred             CCCCCCCCCC
Confidence            4566666664

>PF15135 UPF0515: Uncharacterised protein UPF0515

Probab=88.54  E-value=0.3  Score=33.12  Aligned_cols=55  Identities=16%  Similarity=0.437  Sum_probs=38.1

Q ss_pred             CCccccCCcchhhhccchhhHHHhhhcccCCCCCCCCC------CcceeccCCCCccCCcc
Q psy3948           4 DHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDK------SYNYACFICTYHTRKHG   58 (143)
Q Consensus         4 ~~~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~------~~~~~c~~c~~~~~~~~   58 (143)
                      .+..|.|..|+..++...-.......|..|.+.|.+..      ---|.|+.|+..|....
T Consensus       109 ~drqFaC~~Cd~~WwRrvp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G~~  169 (278)
T PF15135_consen  109 VDRQFACSSCDHMWWRRVPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRGFA  169 (278)
T ss_pred             cceeeeccccchHHHhccCcccccccccccccccCCCccccccceeeeecccccccchhhh
Confidence            35689999998887654433333447999998886311      12388999999998654

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=88.10  E-value=0.39  Score=28.46  Aligned_cols=28  Identities=18%  Similarity=0.246  Sum_probs=12.6

Q ss_pred             cccCCCCCCCCCCcceeccCCCCccCCc
Q psy3948          30 CKSCKKPKRPDKSYNYACFICTYHTRKH   57 (143)
Q Consensus        30 c~~c~~~~~~~~~~~~~c~~c~~~~~~~   57 (143)
                      |+.||+.|=--.+.|..|+.||..|.-.
T Consensus        12 Cp~CG~kFYDLnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   12 CPSCGAKFYDLNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCCCcchhccCCCCCccCCCCCCccCcc
Confidence            4444444432222344556666555543

The function of members of this family is unknown.

>smart00614 ZnF_BED BED zinc finger

Probab=87.70  E-value=0.69  Score=23.18  Aligned_cols=23  Identities=17%  Similarity=-0.048  Sum_probs=17.1

Q ss_pred             eecccccccccch-----HHHHHHHHHH
Q psy3948         101 HKCANVIIIAIMY-----HILEIMLEDI  123 (143)
Q Consensus       101 ~~C~~C~~~f~~~-----s~l~~h~~~~  123 (143)
                      -.|..|++.++..     +.|.+|++..
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~   46 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLRRK   46 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHHhH
Confidence            4688888887665     6899998843

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=86.19  E-value=0.84  Score=23.79  Aligned_cols=11  Identities=18%  Similarity=0.431  Sum_probs=6.3

Q ss_pred             cceeccCCCCc
Q psy3948          43 YNYACFICTYH   53 (143)
Q Consensus        43 ~~~~c~~c~~~   53 (143)
                      ..|.|+.||..
T Consensus        24 ~~F~CPnCG~~   34 (59)
T PRK14890         24 VKFLCPNCGEV   34 (59)
T ss_pred             CEeeCCCCCCe
Confidence            44666666644

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=86.14  E-value=0.42  Score=21.76  Aligned_cols=9  Identities=44%  Similarity=1.283  Sum_probs=4.4

Q ss_pred             eeccCCCCc
Q psy3948          45 YACFICTYH   53 (143)
Q Consensus        45 ~~c~~c~~~   53 (143)
                      +.|..||..
T Consensus         2 ~~C~~CGy~   10 (33)
T cd00350           2 YVCPVCGYI   10 (33)
T ss_pred             EECCCCCCE
Confidence            345555544

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG1146|consensus

Probab=86.06  E-value=0.31  Score=40.47  Aligned_cols=23  Identities=22%  Similarity=0.181  Sum_probs=21.2

Q ss_pred             CceecccccccccchHHHHHHHH
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLE  121 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~  121 (143)
                      ++|.|..|.+.++...+|.+|+.
T Consensus       517 ~p~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  517 KPYPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             CcccceeeeeeeecchHHHHHHH
Confidence            57999999999999999999976

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=85.73  E-value=0.75  Score=19.76  Aligned_cols=8  Identities=38%  Similarity=0.912  Sum_probs=4.2

Q ss_pred             ccCCCCcc
Q psy3948          47 CFICTYHT   54 (143)
Q Consensus        47 c~~c~~~~   54 (143)
                      |+.||..|
T Consensus        17 Cp~CG~~F   24 (26)
T PF10571_consen   17 CPHCGYDF   24 (26)
T ss_pred             CCCCCCCC
Confidence            55555544

Several members are annotated as putative helicases.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=85.03  E-value=0.16  Score=24.15  Aligned_cols=15  Identities=33%  Similarity=0.642  Sum_probs=10.5

Q ss_pred             cccCCcchhhhccch
Q psy3948           7 ILKCTFCNIIFNKLQ   21 (143)
Q Consensus         7 ~~~C~~C~~~f~~~~   21 (143)
                      -|.|+.||..|....
T Consensus         5 ~y~C~~Cg~~fe~~~   19 (41)
T smart00834        5 EYRCEDCGHTFEVLQ   19 (41)
T ss_pred             EEEcCCCCCEEEEEE
Confidence            467888888875443

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=84.98  E-value=0.59  Score=21.83  Aligned_cols=10  Identities=30%  Similarity=0.989  Sum_probs=5.3

Q ss_pred             ccCCcchhhh
Q psy3948           8 LKCTFCNIIF   17 (143)
Q Consensus         8 ~~C~~C~~~f   17 (143)
                      ..|+.|+..|
T Consensus         3 ~~CP~C~~~~   12 (38)
T TIGR02098         3 IQCPNCKTSF   12 (38)
T ss_pred             EECCCCCCEE
Confidence            3455555554

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=84.88  E-value=0.13  Score=24.85  Aligned_cols=15  Identities=33%  Similarity=0.680  Sum_probs=10.9

Q ss_pred             ccCCcchhhhccchh
Q psy3948           8 LKCTFCNIIFNKLQD   22 (143)
Q Consensus         8 ~~C~~C~~~f~~~~~   22 (143)
                      |.|+.||..|.....
T Consensus         6 y~C~~Cg~~fe~~~~   20 (42)
T PF09723_consen    6 YRCEECGHEFEVLQS   20 (42)
T ss_pred             EEeCCCCCEEEEEEE
Confidence            678888888855544

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=84.52  E-value=0.32  Score=35.21  Aligned_cols=62  Identities=26%  Similarity=0.430  Sum_probs=52.5

Q ss_pred             cceeccCCCCccCCcchHHHhhh--hcCCC--CCccCC--CCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          43 YNYACFICTYHTRKHGDMIGHMR--KHTGV--KPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        43 ~~~~c~~c~~~~~~~~~l~~h~~--~~~~~--~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      .++.|..|...+.....+..|.+  .|.++  +++.|+  .|++.|.+...+..|...|++.+++.+.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            35778889999999999999988  79998  899999  7999999999999998888877665553

>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function

Probab=83.75  E-value=0.62  Score=28.48  Aligned_cols=27  Identities=30%  Similarity=0.582  Sum_probs=18.6

Q ss_pred             cccCCcchhhhccchhhHHHhhhcccCCC
Q psy3948           7 ILKCTFCNIIFNKLQDEELIMTHCKSCKK   35 (143)
Q Consensus         7 ~~~C~~C~~~f~~~~~~~~~~~~c~~c~~   35 (143)
                      ||+|..||++|..-+..+..  =|+.||.
T Consensus         1 PH~Ct~Cg~~f~dgs~eil~--GCP~CGg   27 (131)
T PF09845_consen    1 PHQCTKCGRVFEDGSKEILS--GCPECGG   27 (131)
T ss_pred             CcccCcCCCCcCCCcHHHHc--cCcccCC
Confidence            68999999999765543222  3777764

>KOG2186|consensus

Probab=83.33  E-value=0.72  Score=31.45  Aligned_cols=38  Identities=18%  Similarity=0.520  Sum_probs=15.8

Q ss_pred             eeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCC
Q psy3948          45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCST   84 (143)
Q Consensus        45 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~   84 (143)
                      |.|.+||.+..-+ .+..|+..-++ ..|.|..|+..|..
T Consensus         4 FtCnvCgEsvKKp-~vekH~srCrn-~~fSCIDC~k~F~~   41 (276)
T KOG2186|consen    4 FTCNVCGESVKKP-QVEKHMSRCRN-AYFSCIDCGKTFER   41 (276)
T ss_pred             Eehhhhhhhcccc-chHHHHHhccC-CeeEEeeccccccc
Confidence            3444444444422 33334333333 23444445444444

>KOG1146|consensus

Probab=83.12  E-value=0.86  Score=38.10  Aligned_cols=65  Identities=22%  Similarity=0.379  Sum_probs=42.9

Q ss_pred             CCCCCccccCCcchhhhccchh---hHHHhhhc---ccC----------C-CCCCCCCCcceeccCCCCccCCcchHHHh
Q psy3948           1 MFVDHTILKCTFCNIIFNKLQD---EELIMTHC---KSC----------K-KPKRPDKSYNYACFICTYHTRKHGDMIGH   63 (143)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~---~~~~~~~c---~~c----------~-~~~~~~~~~~~~c~~c~~~~~~~~~l~~h   63 (143)
                      |+.-.+.++|+.|+..|.....   |++.....   ..|          . ..+ ....+++.|..|..++.....|.+|
T Consensus       459 L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~-~~~~~p~~C~~C~~stttng~Lsih  537 (1406)
T KOG1146|consen  459 LHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVY-RCPGKPYPCRACNYSTTTNGNLSIH  537 (1406)
T ss_pred             eecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccc-cCCCCcccceeeeeeeecchHHHHH
Confidence            3455689999999999977776   55542200   111          0 111 2334678899999999888888888


Q ss_pred             hhh
Q psy3948          64 MRK   66 (143)
Q Consensus        64 ~~~   66 (143)
                      +..
T Consensus       538 lqS  540 (1406)
T KOG1146|consen  538 LQS  540 (1406)
T ss_pred             HHH
Confidence            764

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=83.02  E-value=0.21  Score=25.19  Aligned_cols=15  Identities=40%  Similarity=0.709  Sum_probs=11.0

Q ss_pred             cccCCcchhhhccch
Q psy3948           7 ILKCTFCNIIFNKLQ   21 (143)
Q Consensus         7 ~~~C~~C~~~f~~~~   21 (143)
                      -|.|+.||..|..+.
T Consensus         5 ey~C~~Cg~~fe~~~   19 (52)
T TIGR02605         5 EYRCTACGHRFEVLQ   19 (52)
T ss_pred             EEEeCCCCCEeEEEE
Confidence            367999998885543

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=83.01  E-value=1.3  Score=26.20  Aligned_cols=25  Identities=12%  Similarity=0.163  Sum_probs=23.1

Q ss_pred             eec----ccccccccchHHHHHHHHHHhc
Q psy3948         101 HKC----ANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus       101 ~~C----~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      |.|    ..|++...+...+.+|.+.+|+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            899    9999999999999999998875

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=82.64  E-value=0.87  Score=22.37  Aligned_cols=11  Identities=27%  Similarity=0.495  Sum_probs=6.0

Q ss_pred             cccCCcchhhh
Q psy3948           7 ILKCTFCNIIF   17 (143)
Q Consensus         7 ~~~C~~C~~~f   17 (143)
                      .|.|+.||..|
T Consensus         3 ~y~C~~CG~~~   13 (46)
T PRK00398          3 EYKCARCGREV   13 (46)
T ss_pred             EEECCCCCCEE
Confidence            35555555554

>KOG2893|consensus

Probab=81.80  E-value=0.46  Score=32.10  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=13.9

Q ss_pred             cceeccCCCCccCCcchHHHh
Q psy3948          43 YNYACFICTYHTRKHGDMIGH   63 (143)
Q Consensus        43 ~~~~c~~c~~~~~~~~~l~~h   63 (143)
                      +.|+|.+|.+.+.+-..|..|
T Consensus        33 khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   33 KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             ccceeeeehhhhccCCCceee
Confidence            457777777776666666555

>KOG2231|consensus

Probab=81.76  E-value=2  Score=33.67  Aligned_cols=93  Identities=18%  Similarity=0.201  Sum_probs=47.4

Q ss_pred             hcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCC---------CCCCChHHHHHHHHHhcC-C
Q psy3948          29 HCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCN---------YSCSTKSALSVHQKRHTG-L   98 (143)
Q Consensus        29 ~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~---------~~f~~~~~l~~h~~~h~~-e   98 (143)
                      .|..|++.+.- ......|..| ..|.....|..|+.....  -+.|..|.         ...-+...|+.|.....- +
T Consensus       101 ~C~~C~~~~~~-~~~~~~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~  176 (669)
T KOG2231|consen  101 SCHICDRRFRA-LYNKKECLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDD  176 (669)
T ss_pred             hcCccccchhh-hcccCCCccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCCcc
Confidence            57777766631 0111235556 455555666777632221  12333322         123344556666553221 2


Q ss_pred             C----ceecccccccccchHHHHHHHHHHhc
Q psy3948          99 K----AHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus        99 ~----~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      +    .-.|..|...|.....|.+|++.+|.
T Consensus       177 ~s~rGhp~C~~C~~~fld~~el~rH~~~~h~  207 (669)
T KOG2231|consen  177 ESCRGHPLCKFCHERFLDDDELYRHLRFDHE  207 (669)
T ss_pred             ccccCCccchhhhhhhccHHHHHHhhcccee
Confidence            1    12577777777777777777776653

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=81.55  E-value=0.91  Score=22.23  Aligned_cols=13  Identities=23%  Similarity=0.401  Sum_probs=7.0

Q ss_pred             ceeccCCCCccCC
Q psy3948          44 NYACFICTYHTRK   56 (143)
Q Consensus        44 ~~~c~~c~~~~~~   56 (143)
                      ...|+.||.....
T Consensus        19 ~irC~~CG~rIly   31 (44)
T smart00659       19 VVRCRECGYRILY   31 (44)
T ss_pred             ceECCCCCceEEE
Confidence            3456666655443

present in RNA polymerase I, II and III

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=81.47  E-value=0.64  Score=30.19  Aligned_cols=10  Identities=20%  Similarity=0.514  Sum_probs=4.9

Q ss_pred             eeccCCCCcc
Q psy3948          45 YACFICTYHT   54 (143)
Q Consensus        45 ~~c~~c~~~~   54 (143)
                      |.|+.||...
T Consensus       137 F~Cp~Cg~~L  146 (178)
T PRK06266        137 FRCPQCGEML  146 (178)
T ss_pred             CcCCCCCCCC
Confidence            4455555443

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=81.03  E-value=1.3  Score=26.93  Aligned_cols=28  Identities=4%  Similarity=-0.177  Sum_probs=15.0

Q ss_pred             cccCCCCCCCCCCcceeccCCCCccCCc
Q psy3948          30 CKSCKKPKRPDKSYNYACFICTYHTRKH   57 (143)
Q Consensus        30 c~~c~~~~~~~~~~~~~c~~c~~~~~~~   57 (143)
                      |+.|++.|---.+.|..|+.||..+.-.
T Consensus        12 Cp~cg~kFYDLnk~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        12 CPNTGSKFYDLNRRPAVSPYTGEQFPPE   39 (129)
T ss_pred             CCCcCccccccCCCCccCCCcCCccCcc
Confidence            5555555543333455666676665544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF15269 zf-C2H2_7: Zinc-finger

Probab=80.54  E-value=1.5  Score=21.46  Aligned_cols=28  Identities=11%  Similarity=-0.040  Sum_probs=22.3

Q ss_pred             eecccccccccchHHHHHHHHHHhcCCC
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      |+|-.|..+..-.|.|..|++-.-+++.
T Consensus        21 ykcfqcpftc~~kshl~nhmky~lckns   48 (54)
T PF15269_consen   21 YKCFQCPFTCNEKSHLFNHMKYSLCKNS   48 (54)
T ss_pred             ceeecCCcccchHHHHHHHHHHHhhhhh
Confidence            6888898888899999999886554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		4e-07
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-06
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		8e-05
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-04
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		4e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-04
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		6e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 31/61 (50%)
Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
           YAC  C     +   +  H R HTG KP KC  C  S S K  L+ HQ+ HTG K +KC 
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 105 N 105
Sbjct: 82  E 82

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 30/61 (49%)
Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
           Y C  C     +  ++  H R HTG KP KC  C  S S  S L  HQ+ HTG K +KC 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 105 N 105
Sbjct: 65  E 65

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 40 DKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
          +K Y      C +   +  ++  H RKHTG KP +C  CN S S    L++H KRH
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 42  SYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAH 101
           S  + C +C     +   +  HMR HTGVKP KC +C+Y+ +  S+L+ H + H+  +  
Sbjct: 6   SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 102 KC 103
           KC
Sbjct: 66  KC 67

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           H R+HTGVKP +C +C    S    L  H + HTG K   C
Sbjct: 57  HQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 45  YACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
           YAC +  C     +  D+  H+R HTG KP +C  C  + S    L+ H + HTG K   
Sbjct: 5   YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 C 103
           C
Sbjct: 65  C 65

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
          H+R HTG KP KC  C Y+ + K++L  H +RH
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	9e-15
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	9e-12
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	7e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-10
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	8e-07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-10
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-10
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-10
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-10
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	6e-10
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-05
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	6e-10
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-10
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	8e-10
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-10
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-09
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-09
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-09
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-09
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-09
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-09
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-07
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-09
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-09
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-07
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	7e-08
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-09
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-09
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-06
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-09
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	4e-09
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-09
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	4e-09
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-09
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-09
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-09
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	5e-09
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-09
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	5e-09
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-09
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-09
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	5e-09
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	6e-09
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-09
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	6e-09
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-09
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	6e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-07
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-09
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-09
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-09
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-09
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-09
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	9e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-08
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-09
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-08
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-08
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-06
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-06
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-07
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-07
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-08
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-08
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-08
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-07
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-08
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-08
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-08
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-08
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-08
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-08
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-08
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-08
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-08
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-08
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-08
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-08
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-08
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-08
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-06
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-08
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-08
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-08
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-08
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-08
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-08
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-08
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-08
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	6e-08
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-08
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	9e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	9e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-05
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-07
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-05
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-07
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-07
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-07
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-07
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	3e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-06
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	4e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	6e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	6e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-05
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	6e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	5e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	7e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	9e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	8e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	9e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	9e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	6e-06
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-06
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	2e-06
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-06
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	4e-06
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	6e-06
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	6e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	6e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-04
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	7e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	9e-06
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	1e-05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-04
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	1e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	2e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	2e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	3e-04

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 63.7 bits (156), Expect = 9e-15
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
             C  C+Y       +  H R H   +P KC+ C++     S LS H K+  G  +   +
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 56.0 bits (136), Expect = 9e-12
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 65  RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
              +   P KCS C+YSCS+K+AL +H++ H   +  KC
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKC 40

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 54.4 bits (132), Expect = 7e-11
 Identities = 19/60 (31%), Positives = 26/60 (43%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
           Y C  C Y       +  H+R H+  +P KC  C Y+    S L+VH + HTG       
Sbjct: 37  YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 53.6 bits (130), Expect = 1e-10
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           + C +C     +   +  HMR HTGVKP KC +C+Y+ +  S+L+ H + H+  +  KC
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 43.6 bits (104), Expect = 8e-07
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 67  HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                P KC  C    S K  L  H + HTG+K +KC
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKC 39

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 52.1 bits (126), Expect = 1e-10
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +C+ C  + +TKS L VHQ+ HTG      
Sbjct: 3   SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.1 bits (126), Expect = 1e-10
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG KP KCS C  + + KS L +HQ+ HTG +    ++
Sbjct: 3   SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.2 bits (126), Expect = 2e-10
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG KP KCS C  S + KS L +HQK HTG +    ++
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 4e-10
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC  C    ++K  L +HQK HTG +    
Sbjct: 3   SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 52.5 bits (127), Expect = 6e-10
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 58  GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
             +  H R+HTGVKP +C +C    S    L  H + HTG K   C
Sbjct: 52  DQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 47.5 bits (114), Expect = 4e-08
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 55  RKHGDMIGHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKC 103
            K   +  H RKHTG KP +C    C    S    L  HQ+RHTG+K  +C
Sbjct: 19  FKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC 69

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRH 95
           + C  C     +   +  H R HTG KP  C    C    +    L  H   H
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 50.6 bits (122), Expect = 6e-10
 Identities = 19/41 (46%), Positives = 22/41 (53%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TGVKP  CS C  + S KS L VHQ+ HTG+K    
Sbjct: 3   SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 50.2 bits (121), Expect = 7e-10
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG+KP  C+ C  +  +KS L +H + HTG      
Sbjct: 3   SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 50.2 bits (121), Expect = 8e-10
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G KP +C+ C  +   KS L VH++ H G+     
Sbjct: 3   SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 9e-10
 Identities = 17/41 (41%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +CS C  S   KS L VHQ+ HTG      
Sbjct: 3   SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 49.8 bits (120), Expect = 1e-09
 Identities = 18/41 (43%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC  C    S +SAL+VH K HTG K    
Sbjct: 3   SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 1e-09
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 62  GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                  G K  KC+ C  + +  S+L+VHQ+ HTG K    ++
Sbjct: 2   SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 49.8 bits (120), Expect = 1e-09
 Identities = 17/41 (41%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                 GV P KCS C  S S K  L VHQ+ HT  K    
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.5 bits (119), Expect = 1e-09
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG KP +CS C  S + KS L VHQ+ HTG K    ++
Sbjct: 3   SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 2e-09
 Identities = 13/41 (31%), Positives = 16/41 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G KP KC  C      +  L  HQ+ HTG K    
Sbjct: 3   SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 2e-09
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +CS C  + +TKS L VHQ+ HTG K    
Sbjct: 3   SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 2e-09
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                 G KP  CS C  + S+KS L +H + H+G K    ++
Sbjct: 3   SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 49.7 bits (119), Expect = 3e-09
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHT---GVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAH 101
             C IC +  R+   +  H RKH          C  C        +++ H+ +       
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 102 KC 103
             
Sbjct: 68  AP 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 45.5 bits (108), Expect = 1e-07
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 67  HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
            +G   L+C  C ++C  K++L+ HQ++H    A  
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAAL 37

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 3e-09
 Identities = 14/41 (34%), Positives = 16/41 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC  C  S   +S L+ H   HT  K    
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 49.8 bits (120), Expect = 3e-09
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 58  GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG----LKAHKC 103
           G      R HTG KP  CS C+ +   K  L +H KR+        A  C
Sbjct: 1   GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC 50

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTG----VKPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
           YAC  C    R+   +  H +++           CS C  + + ++ ++ H     G   
Sbjct: 16  YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75

Query: 101 HKC 103
            + 
Sbjct: 76  VEG 78

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 67  HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
            +G KP  CS C  + S+KS L VHQ+ H   K    ++
Sbjct: 5   SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.4 bits (119), Expect = 3e-09
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 58  GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG--LKAHKC 103
           G      R H+G KP +C  C+   +    + +H  +     +    C
Sbjct: 1   GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHC 48

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.0 bits (110), Expect = 7e-08
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 45 YACFICTYHTRKHGDMIGHMRKHTG--VKPLKCSSCNYSCSTKSALSVHQKR-HTGLK 99
          Y C+IC     + G M  H+ +     V    C  C+   + KS L VH ++ H+   
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG +P +C  C  +  TKS+L  H++ HTG K    
Sbjct: 3   SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.4 bits (119), Expect = 3e-09
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 56  KHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
             G       +    +  KC  C  S S  S LS H++ HTG K +KC
Sbjct: 2   SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKC 49

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.8 bits (102), Expect = 1e-06
 Identities = 20/58 (34%), Positives = 24/58 (41%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
           Y C  C        D+  H R HTG KP KC  C  +   +S L  H + HTG     
Sbjct: 19  YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG KP +CS C  + S + +LSVHQ+ H+G K    ++
Sbjct: 3   SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 48.9 bits (116), Expect = 4e-09
 Identities = 20/55 (36%), Positives = 27/55 (49%)

Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
          Y C  C    +K   +  H+R HT V+P  C+ CN+S  TK  L+ H K     K
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 4e-09
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G KP  C+ C  + S KS LS HQ+ HTG K    
Sbjct: 3   SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 4e-09
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG KP KC+ C  +   KS L +HQ+ H   K    ++
Sbjct: 3   SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 4e-09
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP  C+ C  + + +S L  HQK HT  K    
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 4e-09
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG +  +CS C  +   KS LS+HQ+ H G K    
Sbjct: 3   SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 5e-09
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG +  +CS C  + + KS L +HQ+ HTG K    
Sbjct: 3   SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 5e-09
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +  KP KC  C    + +  L +HQ+ H G K    
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 5e-09
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC+ C    +  S L+ HQ+ HTG+K    
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 47.9 bits (115), Expect = 5e-09
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
          G      G KP +C  C  + S K +L VH + HTG  
Sbjct: 1  GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 5e-09
 Identities = 14/41 (34%), Positives = 17/41 (41%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G KP KC  C    +  S L  HQ+ HTG K    
Sbjct: 3   SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 5e-09
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC  C+ S    S+L+VHQ+ HTG K    
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 47.9 bits (115), Expect = 5e-09
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +C+ C  S   K  L  HQ+ HTG K+   
Sbjct: 3   SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 47.9 bits (115), Expect = 6e-09
 Identities = 13/41 (31%), Positives = 16/41 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                 G K  KC  C+   S  S+L +HQ  H G K    
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 6e-09
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG  P  CS C    + K+ L +HQK HTG +    ++
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 6e-09
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG K   C  C  S S    L  H++ H+G K    ++
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 6e-09
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG  P +C  C  + S K  L  HQ+ H G K    ++
Sbjct: 3   SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 47.9 bits (115), Expect = 6e-09
 Identities = 13/41 (31%), Positives = 16/41 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G KP KC  C     T S    HQ+ H+G K    
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 48.6 bits (117), Expect = 6e-09
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           H       KP KC  C  S   K  L+ H+  HTG K ++C
Sbjct: 8   HSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRC 48

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 45.1 bits (108), Expect = 1e-07
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
          Y C  C    R  G++  H   HTG KP +C+ C    +  + L  H + H+G K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 7e-09
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC+ C  +   +S+L++HQ  H+G K    
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 7e-09
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG K  +C+ C  + + KS LS+HQK HTG K    
Sbjct: 3   SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 7e-09
 Identities = 14/41 (34%), Positives = 16/41 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP  C  C  +    S L  HQ+ HTG K    
Sbjct: 3   SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 7e-09
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +C  C  S S  S L VHQ+ HTG      
Sbjct: 3   SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 47.5 bits (114), Expect = 8e-09
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +C+ C  S S  S L+ HQ+ HTG K    
Sbjct: 3   SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 8e-09
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TGVKP  C+ C  + S  S+L+ HQ  HTG K    
Sbjct: 3   SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 48.6 bits (117), Expect = 9e-09
 Identities = 18/46 (39%), Positives = 24/46 (52%)

Query: 58  GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           G +  H+R HTG KP +C  C  + S    L+ H + HTG K   C
Sbjct: 20  GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 47.1 bits (113), Expect = 4e-08
 Identities = 16/55 (29%), Positives = 22/55 (40%)

Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
          + C IC  +  +   +  H+R HTG KP  C  C    +       H K H   K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 47.5 bits (114), Expect = 9e-09
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG KP KC  C      +  L  H   HTG K    ++
Sbjct: 3   SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +C  C+ + + K+ L+ HQK HTG K    
Sbjct: 3   SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG +P  C+ C  + + +S L  HQK HTG K    
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +C+ C  + + +S L  HQK HTG K    
Sbjct: 3   SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 48.6 bits (117), Expect = 1e-08
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 61  IGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
             HM  H G++P  C  C      K  L  H K HTG+K ++C
Sbjct: 26  DRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 42.8 bits (102), Expect = 2e-06
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           Y C +C    +    ++GHM+ HTG+KP +C+ C      + +   H+   +  K+++ 
Sbjct: 38  YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEA 94

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 42.0 bits (100), Expect = 5e-06
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 64  MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
               +G K   C  C  S + KS    H   H GL+ + C
Sbjct: 2   SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGC 40

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.2 bits (113), Expect = 1e-08
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC  C  +    S+ + HQ+ HTG +    
Sbjct: 3   SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           Y C  C     +  ++  H R HTG KP  C  C  S S  + L  HQ+ HTG K +KC
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 25/59 (42%), Positives = 30/59 (50%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           YAC  C     +   +  H R HTG KP KC  C  S S +  L  HQ+ HTG K +KC
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 26/59 (44%), Positives = 31/59 (52%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           YAC  C     +   +  H R HTG KP KC  C  S S K  L+ HQ+ HTG K +KC
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 55  RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
               D+  H R HTG KP KC  C  S S ++ L  HQ+ HTG K + C
Sbjct: 60  SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 16/49 (32%), Positives = 20/49 (40%)

Query: 55  RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                 +       G KP  C  C  S S    L+ HQ+ HTG K +KC
Sbjct: 4   FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKC 52

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.5 bits (109), Expect = 6e-07
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 55  RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
            +  ++  H R HTG KP KC  C  S S + AL+VHQ+ HTG K
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 1e-08
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC+ C  + S  S L+ HQ+ HTG K    
Sbjct: 3   SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 47.1 bits (113), Expect = 1e-08
 Identities = 17/41 (41%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG K  KC+ C    S  S LS HQK HTG K    
Sbjct: 3   SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 1e-08
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +C+ C  + S +S+L+ HQ  HTG K    
Sbjct: 3   SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 1e-08
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC  C  S + +  L+ HQ+ HTG K    
Sbjct: 3   SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 18/43 (41%), Positives = 22/43 (51%)

Query: 61  IGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
            G    H+G KP  C  C  + S  S L  HQ+ HTG K +KC
Sbjct: 3   SGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKC 45

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 44.4 bits (106), Expect = 2e-07
 Identities = 20/55 (36%), Positives = 25/55 (45%)

Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
          Y C  C     +   ++ H R HTG KP KC  C  + S  S L  HQ+ HT   
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 2e-08
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP  C  C  + S    L+ H++ HTG K    
Sbjct: 3   SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 2e-08
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC+ C       S LS HQ+ HTG K    
Sbjct: 3   SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 2e-08
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC+ C  +    S L+ HQ  HTG K    
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 2e-08
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                 G KP +CS C  S S    L+ H   HT  K    ++
Sbjct: 3   SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 48.2 bits (116), Expect = 2e-08
 Identities = 16/59 (27%), Positives = 22/59 (37%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           Y C IC    R+   +  H   H+  KP KC  C         L+VH+  H    +   
Sbjct: 46  YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 47.4 bits (114), Expect = 4e-08
 Identities = 9/43 (20%), Positives = 15/43 (34%)

Query: 61  IGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
            G        K   C  C    +    L +H++ HT  + + C
Sbjct: 6   SGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTC 48

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +C+ C  + S  S L+ HQ+ HTG K    
Sbjct: 3   SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP  C+ C  S   KS L+ H++ HTG K    
Sbjct: 3   SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 2e-08
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +C  C  + + K+ L+ HQ+ HTG K    
Sbjct: 3   SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 14/43 (32%), Positives = 17/43 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                 G K  KC  C    S  S L  HQ+ HTG K    ++
Sbjct: 3   SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 12/41 (29%), Positives = 16/41 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G KP  C  C  +    + L  HQ+ HTG K    
Sbjct: 3   SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 14/41 (34%), Positives = 16/41 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP  C  C  S    S L  HQ+ H+G K    
Sbjct: 3   SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G KP +C  C    +  S L  HQ+ HTG K    
Sbjct: 3   SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 2e-08
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G KP KC+ C    +  S L+ H + HTG K    
Sbjct: 3   SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 3e-08
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +C  C  + S  ++L+ HQ+ H+G K    
Sbjct: 3   SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 3e-08
 Identities = 12/41 (29%), Positives = 16/41 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G KP KC  C  +      L+ H + HTG K    
Sbjct: 3   SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 3e-08
 Identities = 15/41 (36%), Positives = 16/41 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC  C       S L+ HQ  HTG K    
Sbjct: 3   SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR-HTGLK 99
           + C +C    R+  ++  HM  HTG  P KCSSC+     K  L  H  + H+G  
Sbjct: 67  FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 47.5 bits (114), Expect = 5e-08
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 55  RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR---HTGLKAHKC 103
                +  H RKHTG KP +C  C      K  L  H+ R   +   +   C
Sbjct: 18  LSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 55  RKHGDMIGHMRK---HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
            +  +++ H  +   +   +   CS C  +   +  L +H   HTG   +KC
Sbjct: 46  FRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKC 97

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 67  HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
            +G   ++C +C+    +K  L VH ++HTG K  +C
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFEC 38

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 4e-08
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG +P KC+ C  S    + L  HQ+ HTG K    
Sbjct: 3   SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 45.6 bits (109), Expect = 4e-08
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP +C  C  + S  + L  HQ+ HTG K    
Sbjct: 3   SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 5e-08
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG KP  C+ C  +    + L+ H + HT       ++
Sbjct: 3   SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 5e-08
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                +G +P KC+ C      +S L+ H + H+  K+   ++
Sbjct: 3   SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.5 bits (109), Expect = 5e-08
 Identities = 14/41 (34%), Positives = 17/41 (41%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC+ C    +  S L  H+  HTG K    
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 5e-08
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC+ C    +  S L+ H+  HTG K    
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 5e-08
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC+ C    +  S L+ H++ HTG K    
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 45.2 bits (108), Expect = 6e-08
 Identities = 13/41 (31%), Positives = 15/41 (36%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG  P +C  C    S K  L  HQK H+G      
Sbjct: 3   SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 6e-08
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G KP KCS C  +    + L+ H++ HTG +    
Sbjct: 3   SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 45.2 bits (108), Expect = 6e-08
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 65  RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
              +G  P +CS C  + + K  L  HQ+ H G      
Sbjct: 3   SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 7e-08
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                TG KP KC+ C    +  S L+ H+  HTG K    
Sbjct: 3   SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 45.0 bits (107), Expect = 9e-08
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 63  HMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG KP  C+   C +  S    LS H++ H+G+K    ++
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 46.3 bits (111), Expect = 9e-08
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG--LKAHK 102
            AC IC    R    +  H   H+G KP  C  C      K  +S H + H G   K + 
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67

Query: 103 C 103
           C
Sbjct: 68  C 68

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTG--VKPLKCSSCNYSCSTKSALSVHQKR-HTGLKA 100
           Y+C +C    ++   M  H+R H G   KP  C SC    S    L+ H K+ H+G  +
Sbjct: 36  YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 67  HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
            +G   + C  C         L+ H+  H+G K + C
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSC 38

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 1e-07
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                +G +P  C+ C  +    S L  H KRH   K+   ++
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 1e-07
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG KP KC  C  +    S L  H   H+G +    ++
Sbjct: 3   SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 45.1 bits (108), Expect = 1e-07
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 61  IGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
             H+  H+  +P  C  C      KS +  H   HTG K HKC
Sbjct: 18  STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 44.3 bits (106), Expect = 3e-07
 Identities = 18/39 (46%), Positives = 21/39 (53%)

Query: 59 DMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
          DM  H   HTG KP KC  C  + S  S L  H ++HTG
Sbjct: 44 DMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 45.3 bits (108), Expect = 1e-07
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 55  RKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
           +KH  +  H   HT   P +C    C+   S  S L  H+K H G    K 
Sbjct: 14  KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR 94
          H + H G    K  SC++   T +    H   
Sbjct: 52 HEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.1 bits (105), Expect = 2e-07
 Identities = 12/41 (29%), Positives = 16/41 (39%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G K   C  C  +    SAL +HQ+ H G K    
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.1 bits (105), Expect = 2e-07
 Identities = 10/41 (24%), Positives = 14/41 (34%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                 G +  +CS C       S    H++ HTG K    
Sbjct: 3   SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.1 bits (105), Expect = 2e-07
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +  K  +C  C    + KS L+ HQ+ HTG K    
Sbjct: 3   SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 2e-07
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                +G KP +C  C  +      L+ H++ HTG ++   
Sbjct: 3   SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 43.3 bits (103), Expect = 3e-07
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR-HTGLKAHKCAN 105
                TG KP +C  C  +    ++L  H +  HTG K    ++
Sbjct: 3   SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.5 bits (106), Expect = 4e-07
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
          H RKHTG KP +C  CN S S    L++H KRH 
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 63  HMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
           H+R HTG KP KC+   C++  +    L+ H ++HTG K  +C
Sbjct: 36  HLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC 78

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 43.8 bits (104), Expect = 4e-07
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
          H+R HTG KP +C  C  + S    L+ H + HT
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 44.0 bits (105), Expect = 6e-07
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           + C IC  +  +   +  H+R HTG KP  C  C    +       H+           
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILE 61

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 4/58 (6%)

Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR---HTGLK 99
          +AC IC     +  +   H        P+         S    L     R     G +
Sbjct: 32 FACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKKLVGER 88

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 17/104 (16%)

Query: 9   KCTFCNIIFNKLQD--EELIMTHCKSCKKPKRPDKSYNYACFICTYHTRK-----HGDMI 61
           +   C+  F+  +     +   H    +K         + C                 ++
Sbjct: 5   RWDGCSQEFDSQEQLVHHINSEHIHGERKE--------FVCHWGGCSRELRPFKAQYMLV 56

Query: 62  GHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKC 103
            HMR+HTG KP KC+   C  S S    L  H + HTG K + C
Sbjct: 57  VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 63  HMRKHTGVKPLKC--SSCNYSCSTKSALSVHQKR-HTGLKAHKC 103
           H+R HTG KP  C    C+ + S  S  + HQ R H+  K + C
Sbjct: 88  HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 45  YACFICTYHTRKHGDMIGHMRK---HTGVKPLKCSSCNYSC-----STKSALSVHQKRHT 96
                C+        ++ H+     H   K   C     S        +  L VH +RHT
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63

Query: 97  GLKAHKC 103
           G K HKC
Sbjct: 64  GEKPHKC 70

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 42.5 bits (101), Expect = 6e-07
 Identities = 12/38 (31%), Positives = 14/38 (36%)

Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
          G      G KP KC +C       + L  H   HTG  
Sbjct: 1  GSSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG 38

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 43.7 bits (104), Expect = 6e-07
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 41  KSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGL 98
            ++      C     K   +  H+R HTG KP  C    C +  +    L+ H ++HTG 
Sbjct: 4   ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63

Query: 99  KAHKC 103
           +  +C
Sbjct: 64  RPFQC 68

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
          H RKHTG +P +C  C+ + S    L++H KRH
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 36.0 bits (84), Expect = 5e-04
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 66  KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           K T       + C  + +  S L  H + HTG K + C
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC 38

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 45.3 bits (108), Expect = 7e-07
 Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 61  IGHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKC 103
           +G        K   CS   C  + +    L  H  +HTG K   C
Sbjct: 1   MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPC 45

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 44.9 bits (107), Expect = 9e-07
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 55  RKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
            K+  +  H+ KHTG KP  C    C    ++   L+ H   HTG K   C
Sbjct: 25  NKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 55  RKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
           +KH  +  H   HT   P +C    C+   S  S L  H+K H G    K 
Sbjct: 117 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 167

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 55  RKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAH--KC 103
                +  H   HTG K   C    C+   +TK+ +  H  R   +K     C
Sbjct: 55  TSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVC 107

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 19/76 (25%)

Query: 30  CKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS--CNYSCSTKSA 87
           C    K            F   Y       ++ H+R HTG KP  C    C    +    
Sbjct: 65  CPREGKS-----------FKAKYK------LVNHIRVHTGEKPFPCPFPGCGKIFARSEN 107

Query: 88  LSVHQKRHTGLKAHKC 103
           L +H++ HTG K  KC
Sbjct: 108 LKIHKRTHTGEKPFKC 123

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 44.6 bits (106), Expect = 9e-07
 Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 9/68 (13%)

Query: 45  YACFICTYHTRKHGDMIGHMRKHTGVKPLK---------CSSCNYSCSTKSALSVHQKRH 95
                C        +++ H+       P +         C     S   K  L  H + H
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85

Query: 96  TGLKAHKC 103
           TG K   C
Sbjct: 86  TGEKPFPC 93

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 6/57 (10%), Positives = 12/57 (21%), Gaps = 3/57 (5%)

Query: 47  CFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
                   ++    +               SC+ + ST   L  H          + 
Sbjct: 3   SGSSGQPIKQE---LSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN 56

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 42.5 bits (101), Expect = 9e-07
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR-HTG 97
          + C +CT    +   +  H R HT  KP  C  CN + + +  L  H ++ H+G
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 63  HMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKCA 104
           H   HTG KP +C+   C    S    L  H + HTG + + C 
Sbjct: 53  HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 55  RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
           R +  M  H+  H G +   C+ C  +    S L  HQ  HTG K  +C
Sbjct: 18  RDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 63  HMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHK 102
           H+R HTG +P  C    CN   +  + L  H   H   K ++
Sbjct: 83  HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 41.9 bits (99), Expect = 1e-06
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
          G      G  P  C  C  S + + +L+VHQ+  +   
Sbjct: 1  GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
          G  R  TG+KP +C  C+ S S    L++H+KRH
Sbjct: 1  GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 2e-06
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
                TG KP +C  C  + S   +L  H + H        ++
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 40.6 bits (96), Expect = 4e-06
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
               T  K   C+ C  + +    L+ HQK HT 
Sbjct: 3  SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 40.2 bits (95), Expect = 6e-06
 Identities = 11/38 (28%), Positives = 12/38 (31%)

Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
          G      G KP  C  C         L  H + HTG  
Sbjct: 1  GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSG 38

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 40.2 bits (94), Expect = 6e-06
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAH 101
                 G  P KCS C+   + ++ L  H++ H      
Sbjct: 3   SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 41.0 bits (97), Expect = 6e-06
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 63  HMR-KHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
           H + +H   K   C   +C  S + K  L  H K H+  + + C
Sbjct: 28  HKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 67  HTGVKPLKCSS--CNYSCSTKSALSVHQK-RHTGLKAHKC 103
            +G   + C    C    S +  L+ H+K +H   K+  C
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSC 41

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 39.6 bits (93), Expect = 7e-06
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 67  HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
            +G KP  C+ C  + S  + L  HQK HT       
Sbjct: 5   SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 40.2 bits (95), Expect = 9e-06
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 45 YACFICTYHTRKHGDMIGHMR--KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL 98
          Y C +C+       +   H        VK   C  C    + K  ++ H K    +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
             +G +  +C  C  S   K +L++H++ HTG  
Sbjct: 3  SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSG 37

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR-HTGLKAHKC 103
                +  KP  C SC    S    L+ H K+ HT  + HKC
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 8   LKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKH 67
            +C  C+  ++ L +   +  H       +  +           +   +   ++    K 
Sbjct: 20  FRCKDCSAAYDTLVE---LTVHMNETGHYRDDNHE-TDNNNPKRWSKPRKRSLLEMEGKE 75

Query: 68  TGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
              K LKC  C +S  +   LSVH  +  
Sbjct: 76  DAQKVLKCMYCGHSFESLQDLSVHMIKTK 104

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 63  HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR--HTGLKAHKCAN 105
           +    TG    +C  C+ +  T   L+VH     H     H+  N
Sbjct: 10  YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN 54

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 36

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
          KP KC  C+Y+ + K+ L+VH ++HTG K
Sbjct: 8  KPYKCPQCSYASAIKANLNVHLRKHTGEK 36

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 9/73 (12%)

Query: 41  KSYNYACFICTYHTRKHGDMIGHMRK-HTGVKPLK--------CSSCNYSCSTKSALSVH 91
              +     C        +++ H+   H G             C     S   K  L  H
Sbjct: 22  AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81

Query: 92  QKRHTGLKAHKCA 104
            + HTG K+   +
Sbjct: 82  IRVHTGEKSGPSS 94

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 27 MTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMR-KHTGVK---PLKCSSCNYSC 82
          M H       +       Y C  CT+ T        H+  +H  V       C  CN+  
Sbjct: 1  MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60

Query: 83 STKSALSVHQKRH 95
              ALS H  ++
Sbjct: 61 KRYDALSEHNLKY 73

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 62  GHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
           G     + ++   CS   C  +    S L  H + HTG K   C
Sbjct: 7   GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSC 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.9
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.89
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.87
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.86
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.86
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.85
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.84
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.83
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.82
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.82
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.81
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.81
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.8
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.8
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.78
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.78
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.77
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.77
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.75
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.73
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.71
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.71
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.71
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.7
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.7
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.7
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.69
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.68
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.68
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.67
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.67
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.65
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.65
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.65
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.65
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.64
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.64
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.62
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.62
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.62
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.61
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.61
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.61
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.6
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.6
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.59
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.58
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.57
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.57
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.53
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.52
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.51
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.5
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.5
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.49
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.48
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.48
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.47
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.44
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.44
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.42
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.41
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.39
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.38
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.38
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.37
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.35
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.35
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.33
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.33
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.33
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.31
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.31
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.31
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.31
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.3
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.3
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.3
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.29
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.29
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.29
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.29
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.29
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.28
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.28
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.28
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.27
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.27
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.27
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.27
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.25
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.25
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.25
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.25
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.24
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.24
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.24
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.23
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.23
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.22
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.22
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.21
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.21
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.21
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.2
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.2
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.2
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.2
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.2
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.19
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.17
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.17
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.16
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.16
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.15
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.14
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.14
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.14
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.14
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.14
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.14
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.13
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.13
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.09
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.08
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.08
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.07
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.04
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.04
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.03
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.02
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.02
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.02
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.02
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.0
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.0
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.99
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.97
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.96
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.91
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.87
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.82
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.82
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.82
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.76
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.76
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.75
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.72
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.71
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.67
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.66
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.66
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.65
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.64
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.63
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.63
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.61
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.6
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.59
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.59
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.58
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.58
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.57
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.55
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.55
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.89
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.88
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.47
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.79
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.39
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.39
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.36
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.34
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.33
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.32
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.31
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.27
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.27
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.26
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.23
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.22
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.22
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.21
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.21
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.21
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.2
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.18
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.07
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.33
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.05
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.27
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.0
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.99
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.92
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.85
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.88
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.59
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.44
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.91
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.28
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.96
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.82
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.57
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.38
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.23
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.68
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	91.46
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	90.27
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.37
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	88.24
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	86.96
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	86.27
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	85.39
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	84.67
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	80.62

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=1.5e-27  Score=154.29  Aligned_cols=134  Identities=24%  Similarity=0.330  Sum_probs=104.1

Q ss_pred             CCCCccccCCcchhhhccchhhHHH---hh-----hcccCCCCCC-----------CCCCcceeccCCCCccCCcchHHH
Q psy3948           2 FVDHTILKCTFCNIIFNKLQDEELI---MT-----HCKSCKKPKR-----------PDKSYNYACFICTYHTRKHGDMIG   62 (143)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~~~~~---~~-----~c~~c~~~~~-----------~~~~~~~~c~~c~~~~~~~~~l~~   62 (143)
                      +.++++|.|+.|++.|.......++   +.     .|+.|++.|.           +.++++|.|+.|++.|.....|..
T Consensus        16 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   95 (190)
T 2i13_A           16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRA   95 (190)
T ss_dssp             ---------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHH
T ss_pred             cCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHH
Confidence            4567899999999999877763332   22     6999999887           355678999999999999999999


Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccceee
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIAL  135 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~~~  135 (143)
                      |++.|.+.++|.|..|++.|.....|..|++.|++++||.|+.|++.|.+.+.|..|+++|+++++|.|....
T Consensus        96 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~  168 (190)
T 2i13_A           96 HQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG  168 (190)
T ss_dssp             HHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             HHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998433

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=8e-28  Score=155.57  Aligned_cols=128  Identities=28%  Similarity=0.449  Sum_probs=109.4

Q ss_pred             CCCCccccCCcchhhhccchh---hHHHhh-----hcccCCCCCC-----------CCCCcceeccCCCCccCCcchHHH
Q psy3948           2 FVDHTILKCTFCNIIFNKLQD---EELIMT-----HCKSCKKPKR-----------PDKSYNYACFICTYHTRKHGDMIG   62 (143)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~---~~~~~~-----~c~~c~~~~~-----------~~~~~~~~c~~c~~~~~~~~~l~~   62 (143)
                      |.+.++|+|+.|++.|.....   |++.+.     .|+.|++.|.           +.++++|.|+.|++.|.....|..
T Consensus        44 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  123 (190)
T 2i13_A           44 HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA  123 (190)
T ss_dssp             C---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHH
T ss_pred             cCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHH
Confidence            557789999999999987766   444433     6999999997           456788999999999999999999


Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHI  129 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~  129 (143)
                      |++.|.++++|.|..|++.|.....|..|++.|++++||.|+.|++.|.+.+.|..|+++|+++++|
T Consensus       124 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          124 HQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             HHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC------
T ss_pred             HHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999998875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.91  E-value=1.2e-24  Score=133.25  Aligned_cols=90  Identities=19%  Similarity=0.328  Sum_probs=86.0

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHH
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEI  118 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~  118 (143)
                      +.++++|.|++|++.|.....|..|++.|.+++||.|..|++.|.....|..|+++|++++||.|+.|++.|.+.+.|..
T Consensus        17 h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~   96 (133)
T 2lt7_A           17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSS   96 (133)
T ss_dssp             ETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHH
T ss_pred             cCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCC
Q psy3948         119 MLEDIQGRDH  128 (143)
Q Consensus       119 h~~~~~~~~~  128 (143)
                      |++.+++++|
T Consensus        97 H~~~hh~~~p  106 (133)
T 2lt7_A           97 HIKSVHSQDP  106 (133)
T ss_dssp             HHHHHTCCCT
T ss_pred             HhHHhcCCCC
Confidence            9999998765

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=1.2e-23  Score=127.12  Aligned_cols=115  Identities=15%  Similarity=0.257  Sum_probs=99.1

Q ss_pred             CCCccccCCcchhhhccchhhHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhh---cCCCCCccCCCCC
Q psy3948           3 VDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRK---HTGVKPLKCSSCN   79 (143)
Q Consensus         3 ~~~~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~~~~c~~c~   79 (143)
                      .+.++|+|+.|++.|.......++...         +.++++|.|+.|++.|.....|..|+..   +.+.++|.|..|+
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~---------h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~   73 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRK---------HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQ   73 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHH---------HSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHh---------CCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCC
Confidence            467899999999999887763333210         2345779999999999999999999885   5788899999999


Q ss_pred             CCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          80 YSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        80 ~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +.|.....|..|++.|++++||.|..|++.|.+.+.|..|++..|..
T Consensus        74 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           74 ETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             CEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             CccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999866544

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.90  E-value=5.2e-24  Score=133.49  Aligned_cols=130  Identities=17%  Similarity=0.184  Sum_probs=106.2

Q ss_pred             CCCccccCCcchhhhccchhhHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCC--CCC
Q psy3948           3 VDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS--CNY   80 (143)
Q Consensus         3 ~~~~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~   80 (143)
                      ..+..|+|+.|+++|.+.....++....-.-...........+.|..|++.|.....|..|++.|.+.++|.|..  |++
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~  100 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGK  100 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCC
Confidence            456789999999999888774443221000000000111123789999999999999999999999999999998  999


Q ss_pred             CCCChHHHHHHHHHhcCCCceeccc--ccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          81 SCSTKSALSVHQKRHTGLKAHKCAN--VIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        81 ~f~~~~~l~~h~~~h~~e~~~~C~~--C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      .|.....|..|++.|+++++|.|..  |++.|.+.+.|..|+++|+++++|.|.
T Consensus       101 ~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          101 IFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             EESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             ccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999999997  999999999999999999999999875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=9.1e-24  Score=127.74  Aligned_cols=116  Identities=18%  Similarity=0.244  Sum_probs=97.3

Q ss_pred             CCccccCC--cchhhhccchhhHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCC--CC
Q psy3948           4 DHTILKCT--FCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS--CN   79 (143)
Q Consensus         4 ~~~~~~C~--~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~   79 (143)
                      +.++|.|+  .|++.|.+.....++...         + ++++|.|..|++.|.....|..|++.|.+.++|.|..  |+
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~---------h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~   71 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHT---------H-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG   71 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGG---------G-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHH---------c-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCc
Confidence            56789999  899999888775544321         2 4467999999999999999999999999999999985  99


Q ss_pred             CCCCChHHHHHHHHHhcCCCceecc--cccccccchHHHHHHHHHHhcCCCc
Q psy3948          80 YSCSTKSALSVHQKRHTGLKAHKCA--NVIIIAIMYHILEIMLEDIQGRDHI  129 (143)
Q Consensus        80 ~~f~~~~~l~~h~~~h~~e~~~~C~--~C~~~f~~~s~l~~h~~~~~~~~~~  129 (143)
                      +.|.....|..|++.|+++++|.|+  .|++.|.+.+.|..|+++|++++++
T Consensus        72 ~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             CEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            9999999999999999999999995  5999999999999999999988765

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=1.2e-23  Score=126.24  Aligned_cols=112  Identities=24%  Similarity=0.421  Sum_probs=96.5

Q ss_pred             CCCccccCCc--chhhhccchhhHHHhhhcccCCCCCCCCCCcceecc--CCCCccCCcchHHHhhhhcCCCCCccCCCC
Q psy3948           3 VDHTILKCTF--CNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACF--ICTYHTRKHGDMIGHMRKHTGVKPLKCSSC   78 (143)
Q Consensus         3 ~~~~~~~C~~--C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   78 (143)
                      .++++|.|+.  |++.|.+.....++...         +.++++|.|+  .|++.|.....|..|++.|.+.++|.|..|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~---------h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   72 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK---------HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC   72 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHH---------HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTT
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHh---------hCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCcc
Confidence            4688999997  99999887763332210         2334678998  799999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhcCCCceec--ccccccccchHHHHHHHHHH
Q psy3948          79 NYSCSTKSALSVHQKRHTGLKAHKC--ANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus        79 ~~~f~~~~~l~~h~~~h~~e~~~~C--~~C~~~f~~~s~l~~h~~~~  123 (143)
                      ++.|.....|..|+++|+++++|.|  +.|++.|.+.+.|..|+++|
T Consensus        73 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999999999999999999999999  89999999999999998764

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.89  E-value=2.7e-23  Score=134.23  Aligned_cols=128  Identities=21%  Similarity=0.275  Sum_probs=108.8

Q ss_pred             CCCccccC--Ccchhhhccchh---hHHHhh-----hc--ccCCCCCC-----------CCCCcceecc--CCCCccCCc
Q psy3948           3 VDHTILKC--TFCNIIFNKLQD---EELIMT-----HC--KSCKKPKR-----------PDKSYNYACF--ICTYHTRKH   57 (143)
Q Consensus         3 ~~~~~~~C--~~C~~~f~~~~~---~~~~~~-----~c--~~c~~~~~-----------~~~~~~~~c~--~c~~~~~~~   57 (143)
                      ...++|.|  +.|+++|.+...   |++.+.     .|  +.|++.|.           +.++++|.|.  .|++.|...
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~   87 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK   87 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCH
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCH
Confidence            45789999  689999987766   554443     58  88999997           5667889999  899999999


Q ss_pred             chHHHhh-hhc-CCCCCccC--CCCCCCCCChHHHHHHHHHhcCCCceeccc--ccccccchHHHHHHHHHHhcCCCccc
Q psy3948          58 GDMIGHM-RKH-TGVKPLKC--SSCNYSCSTKSALSVHQKRHTGLKAHKCAN--VIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        58 ~~l~~h~-~~~-~~~~~~~c--~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~--C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      ..|..|+ +.| .+.++|.|  ..|++.|.....|..|+++|++++||.|+.  |++.|.+.+.|..|+++|++   |.|
T Consensus        88 ~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C  164 (190)
T 1tf6_A           88 ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC  164 (190)
T ss_dssp             HHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCC
T ss_pred             HHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcC
Confidence            9999998 667 46788999  889999999999999999999999999988  99999999999999999887   555


Q ss_pred             ce
Q psy3948         132 NI  133 (143)
Q Consensus       132 ~~  133 (143)
                      ..
T Consensus       165 ~~  166 (190)
T 1tf6_A          165 KK  166 (190)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=5.3e-23  Score=128.77  Aligned_cols=121  Identities=20%  Similarity=0.211  Sum_probs=67.9

Q ss_pred             ccccCCcchhhhccchhhHHHhhhcccCCCCCCCCCCcceecc-----CCCCccCCcchHHHhhhhcCCCCCccCCC--C
Q psy3948           6 TILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACF-----ICTYHTRKHGDMIGHMRKHTGVKPLKCSS--C   78 (143)
Q Consensus         6 ~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~-----~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c   78 (143)
                      .+|.|+.|+++|.+.....++...-.      .+.++++|.|+     .|++.|.....|..|++.|.+.++|.|..  |
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h------~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C   75 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEH------IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGC   75 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHT------SSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTC
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhc------cCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCC
Confidence            57899999999988777333321000      01222333333     22355555555555555555555555553  5


Q ss_pred             CCCCCChHHHHHHHHHhcCCCceeccc--ccccccchHHHHHHH-HHHhcCCCcccc
Q psy3948          79 NYSCSTKSALSVHQKRHTGLKAHKCAN--VIIIAIMYHILEIML-EDIQGRDHINVN  132 (143)
Q Consensus        79 ~~~f~~~~~l~~h~~~h~~e~~~~C~~--C~~~f~~~s~l~~h~-~~~~~~~~~~~~  132 (143)
                      ++.|.....|..|++.|+++++|.|+.  |++.|.+.+.|..|+ +.|.++++|.|.
T Consensus        76 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  132 (155)
T 2gli_A           76 RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK  132 (155)
T ss_dssp             CCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECC
T ss_pred             CCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCC
Confidence            555655556666655555555566655  666666666666665 455555555554

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.87  E-value=3e-23  Score=126.98  Aligned_cols=101  Identities=18%  Similarity=0.205  Sum_probs=89.4

Q ss_pred             CCCCCccccCCcchhhhccchh---hHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCC
Q psy3948           1 MFVDHTILKCTFCNIIFNKLQD---EELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS   77 (143)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~---~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   77 (143)
                      ++.++++|+|+.|+++|.+...   |++.+            .++++|.|++|++.|.....|..|+++|++++||.|+.
T Consensus        16 ~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H------------~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   83 (133)
T 2lt7_A           16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIH------------SWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA   83 (133)
T ss_dssp             EETTEEEEEETTTCCEESCHHHHHHHHHHH------------HCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESS
T ss_pred             ecCCCcCeECCCCCCCcCCHHHHHHHHHHc------------CCCCCeeCCccCeecccccchhhhccccCCCccccCCC
Confidence            4678999999999999988877   44443            45678999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhcCCC------ceecccccccccch
Q psy3948          78 CNYSCSTKSALSVHQKRHTGLK------AHKCANVIIIAIMY  113 (143)
Q Consensus        78 c~~~f~~~~~l~~h~~~h~~e~------~~~C~~C~~~f~~~  113 (143)
                      |++.|.....|..|++.|++++      +|.|..|++.|...
T Consensus        84 C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           84 CGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             SCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             CCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            9999999999999999887654      58999999998764

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.86  E-value=1.7e-21  Score=114.69  Aligned_cols=93  Identities=19%  Similarity=0.281  Sum_probs=88.1

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHH
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEI  118 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~  118 (143)
                      ...+++|.|.+|++.|.....|..|++.|.+.++|.|..|++.|.....|..|++.|+++++|.|..|++.|.+.+.|..
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~   91 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV   91 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHH
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCccc
Q psy3948         119 MLEDIQGRDHINV  131 (143)
Q Consensus       119 h~~~~~~~~~~~~  131 (143)
                      |+++|+++++|..
T Consensus        92 H~~~H~~~~~~~~  104 (106)
T 2ee8_A           92 HKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHTTSCCCCCC
T ss_pred             HHHHhCCCCCCcC
Confidence            9999999988754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=1e-21  Score=113.64  Aligned_cols=91  Identities=27%  Similarity=0.466  Sum_probs=85.9

Q ss_pred             CCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHH
Q psy3948          40 DKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIM  119 (143)
Q Consensus        40 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h  119 (143)
                      .++++|.|.+|++.|.....|..|++.|.+.++|.|..|++.|.....|..|++.|.++++|.|..|++.|...+.|..|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   83 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH   83 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcc
Q psy3948         120 LEDIQGRDHIN  130 (143)
Q Consensus       120 ~~~~~~~~~~~  130 (143)
                      ++.|+++.+..
T Consensus        84 ~~~h~~~~~p~   94 (96)
T 2dmd_A           84 LRSHTGDSGPS   94 (96)
T ss_dssp             HTTCCSCCCCC
T ss_pred             HHHhcCCCCCC
Confidence            99999887643

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.85  E-value=5.4e-22  Score=128.14  Aligned_cols=122  Identities=23%  Similarity=0.399  Sum_probs=105.8

Q ss_pred             CCCCccccC--Ccchhhhccchh---hHHHhh-----hcc--cCCCCCC------------C-CCCcceec--cCCCCcc
Q psy3948           2 FVDHTILKC--TFCNIIFNKLQD---EELIMT-----HCK--SCKKPKR------------P-DKSYNYAC--FICTYHT   54 (143)
Q Consensus         2 ~~~~~~~~C--~~C~~~f~~~~~---~~~~~~-----~c~--~c~~~~~------------~-~~~~~~~c--~~c~~~~   54 (143)
                      |.++++|.|  +.|++.|.+...   |++.+.     .|+  .|++.|.            + .++.+|.|  +.|++.|
T Consensus        37 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f  116 (190)
T 1tf6_A           37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF  116 (190)
T ss_dssp             HHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEEC
T ss_pred             cCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCcccc
Confidence            456789999  889999988776   443332     588  8999886            2 35678999  8999999


Q ss_pred             CCcchHHHhhhhcCCCCCccCCC--CCCCCCChHHHHHHHHHhcCCCceeccc---ccccccchHHHHHHHHHHhcC
Q psy3948          55 RKHGDMIGHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKCAN---VIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        55 ~~~~~l~~h~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~h~~e~~~~C~~---C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      .....|..|++.|.+++||.|+.  |++.|.....|..|+++|++   |.|..   |++.|.+.+.|..|+++|+++
T Consensus       117 ~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          117 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             SSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             CCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            99999999999999999999988  99999999999999999988   89999   999999999999999998864

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.84  E-value=3.7e-21  Score=108.08  Aligned_cols=82  Identities=24%  Similarity=0.389  Sum_probs=78.5

Q ss_pred             ceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHH
Q psy3948          44 NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus        44 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~  123 (143)
                      +|.|+.|++.|.....|..|++.|.+.++|.|..|++.|.....|..|++.|+++++|.|..|++.|.+.+.|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hc
Q psy3948         124 QG  125 (143)
Q Consensus       124 ~~  125 (143)
                      ++
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            74

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.84  E-value=2.9e-21  Score=110.40  Aligned_cols=86  Identities=26%  Similarity=0.371  Sum_probs=80.2

Q ss_pred             Ccceecc--CCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHH
Q psy3948          42 SYNYACF--ICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIM  119 (143)
Q Consensus        42 ~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h  119 (143)
                      +++|.|+  .|++.|.....|..|++.|.+.++|.|..|++.|.....|..|++.|+++++|.|..|++.|.+.+.|..|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   81 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH   81 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH
Confidence            5679998  59999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC
Q psy3948         120 LEDIQGRD  127 (143)
Q Consensus       120 ~~~~~~~~  127 (143)
                      +++|++++
T Consensus        82 ~~~H~~~k   89 (90)
T 1a1h_A           82 TKIHLRQK   89 (90)
T ss_dssp             HGGGGC--
T ss_pred             HHHhcccC
Confidence            99998764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=5.8e-21  Score=114.46  Aligned_cols=98  Identities=26%  Similarity=0.414  Sum_probs=90.7

Q ss_pred             CCCcceeccC--CCCccCCcchHHHhhhhcCCCCCccCC--CCCCCCCChHHHHHHHHHhcCCCceecccccccccchHH
Q psy3948          40 DKSYNYACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHI  115 (143)
Q Consensus        40 ~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~  115 (143)
                      .++++|.|.+  |++.|.....|..|++.|.+.++|.|.  .|++.|.....|..|++.|.++++|.|+.|++.|.+.+.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            3567899987  999999999999999999999999999  799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccc--c-eeeee
Q psy3948         116 LEIMLEDIQGRDHINV--N-IALTL  137 (143)
Q Consensus       116 l~~h~~~~~~~~~~~~--~-~~~~~  137 (143)
                      |..|++.|+++.+|.|  . +...+
T Consensus        82 l~~H~~~h~~~~~~~C~~~~C~~~f  106 (119)
T 2jp9_A           82 LKTHTRTHTGEKPFSCRWPSCQKKF  106 (119)
T ss_dssp             HHHHHHHHHTCCCEECCSTTCCCEE
T ss_pred             HHHHHHHhcCCCCeeCCCCCCcccc
Confidence            9999999999999999  4 44444

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=2.4e-20  Score=112.49  Aligned_cols=96  Identities=21%  Similarity=0.258  Sum_probs=89.5

Q ss_pred             CCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHH---hcCCCceecccccccccchHHH
Q psy3948          40 DKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR---HTGLKAHKCANVIIIAIMYHIL  116 (143)
Q Consensus        40 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~---h~~e~~~~C~~C~~~f~~~s~l  116 (143)
                      .++++|.|++|++.|.....|..|++.|.+.++|.|..|++.|.....|..|+..   +.++++|.|+.|++.|...+.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            4567899999999999999999999999999999999999999999999999985   5788999999999999999999


Q ss_pred             HHHHHHHhcCCCcccceee
Q psy3948         117 EIMLEDIQGRDHINVNIAL  135 (143)
Q Consensus       117 ~~h~~~~~~~~~~~~~~~~  135 (143)
                      ..|++.|+++++|.|....
T Consensus        83 ~~H~~~h~~~~~~~C~~C~  101 (124)
T 2dlq_A           83 RLHMVSHTGEMPYKCSSCS  101 (124)
T ss_dssp             HHHHHHHSSSCSEECSSSC
T ss_pred             HHHHHHcCCCCCccCCCcc
Confidence            9999999999999998443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=6.3e-20  Score=105.83  Aligned_cols=86  Identities=24%  Similarity=0.333  Sum_probs=80.2

Q ss_pred             CCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCC--CceecccccccccchHHHH
Q psy3948          40 DKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL--KAHKCANVIIIAIMYHILE  117 (143)
Q Consensus        40 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e--~~~~C~~C~~~f~~~s~l~  117 (143)
                      .++++|.|.+|++.|.....|..|++.|.+.++|.|..|++.|.....|..|++.|+++  ++|.|..|++.|.+.+.|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999987  8999999999999999999


Q ss_pred             HHHHHHhc
Q psy3948         118 IMLEDIQG  125 (143)
Q Consensus       118 ~h~~~~~~  125 (143)
                      .|++..|.
T Consensus        83 ~H~~~~H~   90 (95)
T 2yt9_A           83 GHIKQVHS   90 (95)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHhcC
Confidence            99975443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.82  E-value=4.5e-20  Score=109.26  Aligned_cols=87  Identities=22%  Similarity=0.349  Sum_probs=83.2

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHH
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEI  118 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~  118 (143)
                      +.++++|.| .|++.|.....|..|++.|.+.++|.|..|++.|.....|..|++.|+++++|.|..|++.|...+.|..
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHR   83 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHH
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHH
Confidence            567789999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q psy3948         119 MLEDIQGR  126 (143)
Q Consensus       119 h~~~~~~~  126 (143)
                      |++.++..
T Consensus        84 H~~~~~~~   91 (110)
T 2csh_A           84 HVTSCTKS   91 (110)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHcccc
Confidence            99998864

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=3.5e-20  Score=109.30  Aligned_cols=91  Identities=11%  Similarity=0.103  Sum_probs=83.7

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHH
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEI  118 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~  118 (143)
                      +.++++|.|.+|++.|.....|..|++.|  .++|.|..|++.|.....|..|++ |++++||.|..|++.|...+.|..
T Consensus        11 h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~   87 (107)
T 1wjp_A           11 VENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWR   87 (107)
T ss_dssp             CCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHH
Confidence            56678899999999999999999999988  478999999999999999999996 999999999999999999999999


Q ss_pred             HHH-HHhcCCCcccc
Q psy3948         119 MLE-DIQGRDHINVN  132 (143)
Q Consensus       119 h~~-~~~~~~~~~~~  132 (143)
                      |++ .|.++.+|.+.
T Consensus        88 H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           88 HQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHTSCCCCCCCCC
T ss_pred             HHHHHcCCCCCCCCC
Confidence            997 78788888765

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.81  E-value=2.3e-20  Score=98.71  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=54.0

Q ss_pred             CCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCC
Q psy3948          70 VKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        70 ~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      ++||.|..|++.|.....|..|+++|++++||.|..||+.|...++|..|+++|+++.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999999999999999999999999999999999999999999999988764

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.80  E-value=1.6e-19  Score=108.93  Aligned_cols=90  Identities=24%  Similarity=0.289  Sum_probs=84.4

Q ss_pred             Ccceecc--CCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc--ccccccchHHHH
Q psy3948          42 SYNYACF--ICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN--VIIIAIMYHILE  117 (143)
Q Consensus        42 ~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~--C~~~f~~~s~l~  117 (143)
                      .++|.|+  .|++.|.....|..|++.| +.++|.|..|++.|.....|..|++.|.++++|.|..  |++.|.+.+.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            4578998  8999999999999999999 8889999999999999999999999999999999975  999999999999


Q ss_pred             HHHHHHhcCCCcccc
Q psy3948         118 IMLEDIQGRDHINVN  132 (143)
Q Consensus       118 ~h~~~~~~~~~~~~~  132 (143)
                      .|++.|+++.+|.|.
T Consensus        82 ~H~~~h~~~~~~~C~   96 (124)
T 1ubd_C           82 THVRIHTGDRPYVCP   96 (124)
T ss_dssp             HHHHHHHCCCCCCCC
T ss_pred             HHHHHhCCCCceECC
Confidence            999999999999995

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.1e-19  Score=113.53  Aligned_cols=115  Identities=20%  Similarity=0.293  Sum_probs=98.7

Q ss_pred             CCCCccccCCcch-----hhhccchhhHHHhhhcccCCCCCCCCCCcceeccC--CCCccCCcchHHHhhhhcCCCCCcc
Q psy3948           2 FVDHTILKCTFCN-----IIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFI--CTYHTRKHGDMIGHMRKHTGVKPLK   74 (143)
Q Consensus         2 ~~~~~~~~C~~C~-----~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~   74 (143)
                      |.+.++|.|+.|+     +.|.......++...         +.++++|.|+.  |++.|.....|..|++.|.+.++|.
T Consensus        29 h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~---------h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~   99 (155)
T 2gli_A           29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR---------HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYM   99 (155)
T ss_dssp             SSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHH---------HHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEE
T ss_pred             CCCCcceeCCCCCccchhhhhhhHHHHHHHHHh---------cCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCee
Confidence            5678899999643     778776664333221         23456789985  9999999999999999999999999


Q ss_pred             CCC--CCCCCCChHHHHHHH-HHhcCCCceeccc--ccccccchHHHHHHHHHHhc
Q psy3948          75 CSS--CNYSCSTKSALSVHQ-KRHTGLKAHKCAN--VIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus        75 c~~--c~~~f~~~~~l~~h~-~~h~~e~~~~C~~--C~~~f~~~s~l~~h~~~~~~  125 (143)
                      |+.  |++.|.....|..|+ +.|++++||.|..  |++.|.+.+.|..|++.|++
T Consensus       100 C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          100 CEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            998  999999999999998 7999999999988  99999999999999999875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.78  E-value=5.9e-19  Score=102.60  Aligned_cols=86  Identities=28%  Similarity=0.480  Sum_probs=80.5

Q ss_pred             CCCcceeccC--CCCccCCcchHHHhhhhcCCCCCccCC--CCCCCCCChHHHHHHHHHhcCCCceecccccccccchHH
Q psy3948          40 DKSYNYACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHI  115 (143)
Q Consensus        40 ~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~  115 (143)
                      ..+++|.|..  |++.|.....|..|++.|.+.++|.|.  .|++.|.....|..|++.|+++++|.|..|++.|...+.
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   90 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH   90 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHH
Confidence            4456799996  999999999999999999999999996  699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q psy3948         116 LEIMLEDIQG  125 (143)
Q Consensus       116 l~~h~~~~~~  125 (143)
                      |..|+++|++
T Consensus        91 l~~H~~~H~~  100 (100)
T 2ebt_A           91 LALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999999863

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.78  E-value=4.3e-19  Score=101.06  Aligned_cols=82  Identities=23%  Similarity=0.473  Sum_probs=77.6

Q ss_pred             CcceeccC--CCCccCCcchHHHhhhhcCCCCCccCC--CCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHH
Q psy3948          42 SYNYACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILE  117 (143)
Q Consensus        42 ~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~  117 (143)
                      ...|.|..  |++.|.....|..|++.|.+.++|.|+  .|++.|.....|..|++.|+++++|.|+.|++.|...+.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            35688999  999999999999999999999999997  69999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy3948         118 IMLEDI  123 (143)
Q Consensus       118 ~h~~~~  123 (143)
                      .|++.|
T Consensus        83 ~H~~~H   88 (89)
T 2wbs_A           83 LHMKRH   88 (89)
T ss_dssp             HHGGGG
T ss_pred             HHHHhh
Confidence            999876

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=109.08  Aligned_cols=98  Identities=18%  Similarity=0.197  Sum_probs=88.7

Q ss_pred             CCCcceeccCCCCccCCcchHHHhhhh-cCCCCC--------ccCCCCCCCCCChHHHHHHHHHhcCCCceeccc--ccc
Q psy3948          40 DKSYNYACFICTYHTRKHGDMIGHMRK-HTGVKP--------LKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN--VII  108 (143)
Q Consensus        40 ~~~~~~~c~~c~~~~~~~~~l~~h~~~-~~~~~~--------~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~--C~~  108 (143)
                      ..+..+.|..|++.|.....|..|++. |.+..+        +.|..|++.|.....|..|++.|+++++|.|..  |++
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~  100 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGK  100 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCC
Confidence            455678999999999999999999987 777654        789999999999999999999999999999998  999


Q ss_pred             cccchHHHHHHHHHHhcCCCcccc---eeeee
Q psy3948         109 IAIMYHILEIMLEDIQGRDHINVN---IALTL  137 (143)
Q Consensus       109 ~f~~~s~l~~h~~~~~~~~~~~~~---~~~~~  137 (143)
                      .|...+.|..|++.|+++++|.|.   +...+
T Consensus       101 ~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f  132 (155)
T 2rpc_A          101 IFARSENLKIHKRTHTGEKPFKCEFEGCDRRF  132 (155)
T ss_dssp             EESCHHHHHHHHTTTCSSCSBCCSSTTCCCCB
T ss_pred             ccCCHHHHHHHHHhhCCCCCccCCCCCCCCcc
Confidence            999999999999999999999998   44444

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.5e-19  Score=107.76  Aligned_cols=92  Identities=12%  Similarity=0.088  Sum_probs=82.6

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhh--cCCCCCcc-CCCCCCCC--CChHHHHHHHHHhcCCCceecccccccccch
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRK--HTGVKPLK-CSSCNYSC--STKSALSVHQKRHTGLKAHKCANVIIIAIMY  113 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~~~~-c~~c~~~f--~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~  113 (143)
                      +.++++|.|.+|++.|.....|..|++.  +.+.+++. |..|++.|  .....|..|+++|++++||.|..|++.|...
T Consensus        14 H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~   93 (115)
T 2dmi_A           14 FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESL   93 (115)
T ss_dssp             CCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSH
T ss_pred             eCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCH
Confidence            5667889999999999999999999998  77677654 99999988  8889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcc
Q psy3948         114 HILEIMLEDIQGRDHIN  130 (143)
Q Consensus       114 s~l~~h~~~~~~~~~~~  130 (143)
                      +.|..|++.++....+.
T Consensus        94 ~~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           94 QDLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             HHHHHHHHHTTTTTCSC
T ss_pred             HHHHHHHHHhCCcccCC
Confidence            99999999988765543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.75  E-value=2.4e-19  Score=102.16  Aligned_cols=84  Identities=19%  Similarity=0.279  Sum_probs=78.7

Q ss_pred             CcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHH
Q psy3948          42 SYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLE  121 (143)
Q Consensus        42 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~  121 (143)
                      +++|.|++|++.|.....|..|++.|.+++||.|..|++.|.....|..|++.|.+ .+|.|..|++.|...+.|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            46799999999999999999999999999999999999999999999999998874 78999999999999999999999


Q ss_pred             HHhcC
Q psy3948         122 DIQGR  126 (143)
Q Consensus       122 ~~~~~  126 (143)
                      ..++.
T Consensus        80 ~~h~~   84 (88)
T 1llm_C           80 RLKKL   84 (88)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.73  E-value=9.9e-18  Score=98.43  Aligned_cols=93  Identities=24%  Similarity=0.426  Sum_probs=79.6

Q ss_pred             CCCccccCCcchhhhccchhhHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCC
Q psy3948           3 VDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSC   82 (143)
Q Consensus         3 ~~~~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   82 (143)
                      ..+++|.|+.|++.|.......++...         +..+++|.|.+|++.|.....|..|++.|.+.++|.|..|++.|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~---------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   83 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERT---------HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF   83 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHH---------HCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHH---------cCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcc
Confidence            357899999999999887764333210         24457799999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhcCCCceecc
Q psy3948          83 STKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        83 ~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      .....|..|+++|++++||...
T Consensus        84 ~~~~~L~~H~~~H~~~~~~~~~  105 (106)
T 2ee8_A           84 CQSRTLAVHKTLHMQTSSPTAA  105 (106)
T ss_dssp             SSHHHHHHHHHHTTSCCCCCCC
T ss_pred             cCHHHHHHHHHHhCCCCCCcCC
Confidence            9999999999999999998653

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.71  E-value=5.9e-18  Score=89.35  Aligned_cols=58  Identities=24%  Similarity=0.474  Sum_probs=55.6

Q ss_pred             CcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          42 SYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        42 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      |+||.|.+||+.|.....|..|+++|++++||.|..|++.|.....|..|+++|+||+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999999999999999999999999999999999999999999999999985

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.71  E-value=1.3e-17  Score=93.92  Aligned_cols=78  Identities=24%  Similarity=0.444  Sum_probs=74.1

Q ss_pred             ceec--cCCCCccCCcchHHHhhhhcCCCCCccCCC--CCCCCCChHHHHHHHHHhcCCCceeccc---ccccccchHHH
Q psy3948          44 NYAC--FICTYHTRKHGDMIGHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKCAN---VIIIAIMYHIL  116 (143)
Q Consensus        44 ~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~h~~e~~~~C~~---C~~~f~~~s~l  116 (143)
                      +|.|  +.|++.|.....|..|++.|.++++|.|+.  |++.|.....|..|++.|++   |.|..   |++.|...+.|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            4789  899999999999999999999999999988  99999999999999999988   99999   99999999999


Q ss_pred             HHHHHHHh
Q psy3948         117 EIMLEDIQ  124 (143)
Q Consensus       117 ~~h~~~~~  124 (143)
                      ..|++.||
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=8.8e-18  Score=98.90  Aligned_cols=89  Identities=17%  Similarity=0.274  Sum_probs=78.4

Q ss_pred             CCCCCccccCCcchhhhccchh---hHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCC
Q psy3948           1 MFVDHTILKCTFCNIIFNKLQD---EELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS   77 (143)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~---~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~   77 (143)
                      +|.++++|+|+.|++.|.....   |++.+.              ++|.|.+|++.|.....|..|++ |.+++||.|..
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--------------~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~   74 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLLEQGSHERLCR--------------NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLE   74 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--------------HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGG
T ss_pred             ccCCCcCeECCCCCCccCCHHHHHHHHHHCC--------------CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCcc
Confidence            4678899999999999988776   444332              46899999999999999999986 99999999999


Q ss_pred             CCCCCCChHHHHHHHH-HhcCCCceecc
Q psy3948          78 CNYSCSTKSALSVHQK-RHTGLKAHKCA  104 (143)
Q Consensus        78 c~~~f~~~~~l~~h~~-~h~~e~~~~C~  104 (143)
                      |++.|.....|..|++ .|+++++|.+.
T Consensus        75 C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           75 CMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             GTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             ccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999997 99999999774

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=8.4e-18  Score=97.60  Aligned_cols=78  Identities=15%  Similarity=0.064  Sum_probs=71.0

Q ss_pred             cCCcchHHHhhhhcCCCCCccCCCCCCCCC-ChHHHHHHHHHhcC-CCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          54 TRKHGDMIGHMRKHTGVKPLKCSSCNYSCS-TKSALSVHQKRHTG-LKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        54 ~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~-~~~~l~~h~~~h~~-e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      +.....+..|+++|.+.++|.|..|++.|. ....|..|+++|++ +++|.|..|++.|.+.+.|..|++.|++++++..
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~   85 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA   85 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCC
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCC
Confidence            444456778999999999999999999999 99999999999998 9999999999999999999999999999988644

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=3.5e-17  Score=94.39  Aligned_cols=91  Identities=26%  Similarity=0.503  Sum_probs=79.4

Q ss_pred             CCCCccccCCcchhhhccchhhHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCC
Q psy3948           2 FVDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYS   81 (143)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~   81 (143)
                      ..++++|+|+.|++.|.......++..         .+..+++|.|+.|++.|.....|..|++.|.++++|.|..|++.
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~---------~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   73 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMR---------CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYA   73 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGG---------GCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCE
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHH---------hcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCc
Confidence            467899999999999988877554432         14556789999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHhcCCCce
Q psy3948          82 CSTKSALSVHQKRHTGLKAH  101 (143)
Q Consensus        82 f~~~~~l~~h~~~h~~e~~~  101 (143)
                      |.....|..|+++|+++++.
T Consensus        74 f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           74 SRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             ESSHHHHHHHHTTCCSCCCC
T ss_pred             cCCHHHHHHHHHHhcCCCCC
Confidence            99999999999999988753

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.70  E-value=7.4e-17  Score=88.80  Aligned_cols=65  Identities=25%  Similarity=0.261  Sum_probs=60.2

Q ss_pred             hhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCc
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHI  129 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~  129 (143)
                      ..+.+.++|.|..|++.|.....|..|++.|+++++|.|..|++.|...+.|..|++.|+++++|
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            44677889999999999999999999999999999999999999999999999999999998875

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=2.9e-17  Score=91.17  Aligned_cols=67  Identities=27%  Similarity=0.265  Sum_probs=60.4

Q ss_pred             hhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      ..+.++++|.|..|++.|.....|..|++.|++++||.|..|++.|...+.|..|+++|+++++|.|
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3456778899999999999999999999999999999999999999999999999999999998876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=6.5e-17  Score=90.02  Aligned_cols=70  Identities=21%  Similarity=0.295  Sum_probs=46.1

Q ss_pred             CCcceeccC--CCCccCCcchHHHhhh-hcCCCCCccCCC--CCCCCCChHHHHHHHHHhcCCCceecccccccc
Q psy3948          41 KSYNYACFI--CTYHTRKHGDMIGHMR-KHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKCANVIIIA  110 (143)
Q Consensus        41 ~~~~~~c~~--c~~~~~~~~~l~~h~~-~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f  110 (143)
                      ++++|.|..  |++.|.....|..|++ .|.+.++|.|..  |++.|.....|..|+++|++++||.|..|++.|
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            344556554  6666666666666666 566666666666  666666666666666666666666666666665

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=9.5e-17  Score=87.94  Aligned_cols=65  Identities=28%  Similarity=0.261  Sum_probs=60.8

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCC
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      .++|.+++||.|..|++.|.....|..|++.|++++||.|..|++.|...+.|..|+++|+++..
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            46788999999999999999999999999999999999999999999999999999999987653

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1.5e-16  Score=86.69  Aligned_cols=64  Identities=28%  Similarity=0.460  Sum_probs=59.7

Q ss_pred             hcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCc
Q psy3948          66 KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHI  129 (143)
Q Consensus        66 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~  129 (143)
                      .+.++++|.|..|++.|.....|..|+++|+++++|.|..|++.|...+.|..|++.|+++++.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            4677899999999999999999999999999999999999999999999999999999988764

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=9.6e-17  Score=90.65  Aligned_cols=76  Identities=24%  Similarity=0.314  Sum_probs=67.9

Q ss_pred             hHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCC----CceecccccccccchHHHHHHHHHHhcCCCccccee
Q psy3948          59 DMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL----KAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIA  134 (143)
Q Consensus        59 ~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e----~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~~  134 (143)
                      ++..|+++|.+++||.|..|++.|.....|..|++.+.++    ++|.|..|++.|...+.|..|++.|++++++.|...
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            3556888999999999999999999999999999876654    789999999999999999999999999999988743

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.65  E-value=6.2e-17  Score=92.19  Aligned_cols=84  Identities=24%  Similarity=0.438  Sum_probs=71.5

Q ss_pred             CCccccCC--cchhhhccchh---hHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCC
Q psy3948           4 DHTILKCT--FCNIIFNKLQD---EELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSC   78 (143)
Q Consensus         4 ~~~~~~C~--~C~~~f~~~~~---~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   78 (143)
                      ++++|.|+  .|++.|.....   |++.+            .++++|.|+.|++.|.....|..|++.|.+.++|.|..|
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h------------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   68 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIH------------TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC   68 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHH------------HCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHh------------CCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCC
Confidence            36899998  69999988776   44432            345679999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhcCCC
Q psy3948          79 NYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        79 ~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      ++.|.....|..|+++|++++
T Consensus        69 ~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           69 GRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CCEESSHHHHHHHHGGGGC--
T ss_pred             CchhCCHHHHHHHHHHhcccC
Confidence            999999999999999999876

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.3e-16  Score=92.93  Aligned_cols=68  Identities=13%  Similarity=0.296  Sum_probs=58.3

Q ss_pred             hcCCCCCccCCCCCCCCCChHHHHHHHH-Hh---cCCCceecccccccccchHHHHHH-HHHHhcCCCcccce
Q psy3948          66 KHTGVKPLKCSSCNYSCSTKSALSVHQK-RH---TGLKAHKCANVIIIAIMYHILEIM-LEDIQGRDHINVNI  133 (143)
Q Consensus        66 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~h---~~e~~~~C~~C~~~f~~~s~l~~h-~~~~~~~~~~~~~~  133 (143)
                      .-.+++||.|..|++.|.....|..|++ .|   ++++||.|..||+.|...+.|..| +++|+++++|.|..
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~   84 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM   84 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEE
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCc
Confidence            3467788999999999999999999987 58   568899999999999999999999 78899999998875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=2.2e-16  Score=91.27  Aligned_cols=74  Identities=8%  Similarity=0.016  Sum_probs=66.5

Q ss_pred             ccCCcchHHHhhhhcCCCCCccCCCCCCCC-CChHHHHHHHHHhcCCCceecccccccccchHHHHHH-HHHHhcCC
Q psy3948          53 HTRKHGDMIGHMRKHTGVKPLKCSSCNYSC-STKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIM-LEDIQGRD  127 (143)
Q Consensus        53 ~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f-~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h-~~~~~~~~  127 (143)
                      .+.....+..|.+.+.+.++|.|..|++.| .....|..|+++| +++||.|..|++.|...+.|..| ++.|+++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p   90 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP   90 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCS
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCC
Confidence            455667788888889999999999999999 9999999999999 99999999999999999999999 77776543

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.65  E-value=3.3e-16  Score=81.79  Aligned_cols=57  Identities=28%  Similarity=0.358  Sum_probs=50.7

Q ss_pred             CCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhc
Q psy3948          69 GVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus        69 ~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      +++||.|..|++.|.....|..|+++|++++||.|+.|++.|...+.|..|++.|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            357899999999999999999999999999999999999999999999999999874

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.5e-16  Score=88.28  Aligned_cols=69  Identities=19%  Similarity=0.303  Sum_probs=62.2

Q ss_pred             HHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHH-HhcCC-CceecccccccccchHHHHHHHHHHhcCCC
Q psy3948          60 MIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQK-RHTGL-KAHKCANVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus        60 l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~h~~e-~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      +..|+++|.+++||.|..|++.|.....|..|++ .|+++ ++|.|+.|++.|...+.|..|++.++....
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            4568889999999999999999999999999997 67775 899999999999999999999999886543

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.64  E-value=1.4e-17  Score=101.17  Aligned_cols=114  Identities=7%  Similarity=-0.018  Sum_probs=82.6

Q ss_pred             CCCCCccccCCcchhhhccchh-hHHHhhhcccCCCCCCCCCCcceeccCCCCcc------CCcchHHHhhhhcCCCCCc
Q psy3948           1 MFVDHTILKCTFCNIIFNKLQD-EELIMTHCKSCKKPKRPDKSYNYACFICTYHT------RKHGDMIGHMRKHTGVKPL   73 (143)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~-~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~------~~~~~l~~h~~~~~~~~~~   73 (143)
                      |+.+.++|.|...+........ +.+.+.         ....++.+.|.+|+..+      .....|..|+ .|.+++||
T Consensus         6 ~~~~~k~~~~~~k~~~~~~s~ee~~~~~~---------l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~   75 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIHVTLEELKRYHQ---------LTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQF   75 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEECCHHHHHHHTT---------SCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSE
T ss_pred             hcccccccccccCCeeeeecHHhhhcccc---------CChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCe
Confidence            5778899988876654322211 211111         00111223445544443      3555566665 58889999


Q ss_pred             cCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          74 KCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        74 ~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      .|..|++.|.....|..|+++|  ++||.|..|++.|...+.|..|++.|++.
T Consensus        76 ~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           76 VCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             ECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            9999999999999999999999  89999999999999999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.2e-15  Score=87.64  Aligned_cols=87  Identities=26%  Similarity=0.486  Sum_probs=74.0

Q ss_pred             CCCccccCCcchhhhccchhhHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCC--CCccCCCCCC
Q psy3948           3 VDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGV--KPLKCSSCNY   80 (143)
Q Consensus         3 ~~~~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~--~~~~c~~c~~   80 (143)
                      .+.++|.|+.|++.|.......++...         +..+++|.|++|++.|.....|..|++.|.+.  ++|.|..|++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~---------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~   73 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLS---------HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK   73 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHH---------SCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHh---------cCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccc
Confidence            467899999999999887774333220         34567899999999999999999999999987  8999999999


Q ss_pred             CCCChHHHHHHHH-HhcCC
Q psy3948          81 SCSTKSALSVHQK-RHTGL   98 (143)
Q Consensus        81 ~f~~~~~l~~h~~-~h~~e   98 (143)
                      .|.....|..|++ .|.++
T Consensus        74 ~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           74 GFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             CBSSHHHHHHHHHHTSCCC
T ss_pred             hhCCHHHHHHHHHHhcCCC
Confidence            9999999999986 78765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.62  E-value=4.3e-16  Score=87.82  Aligned_cols=63  Identities=13%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHH-HhcC
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLED-IQGR  126 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~-~~~~  126 (143)
                      +..+...++|.|+.|++.|.....|..|+++|++++||.|..|++.|...+.|.+|++. |.++
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            34566778899999999999999999999999999999999999999999999999864 5444

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.62  E-value=2.5e-16  Score=88.09  Aligned_cols=82  Identities=29%  Similarity=0.541  Sum_probs=69.4

Q ss_pred             cccCCcchhhhccchhhHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChH
Q psy3948           7 ILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKS   86 (143)
Q Consensus         7 ~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~   86 (143)
                      +|.|+.|++.|........+...         +.++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|....
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~---------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   71 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLI---------HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSS   71 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH---------HHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHH
T ss_pred             CccCCCCcccccCchhHHHHHHH---------cCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChH
Confidence            58999999999887763332210         234567999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q psy3948          87 ALSVHQKRHTG   97 (143)
Q Consensus        87 ~l~~h~~~h~~   97 (143)
                      .|..|+++|+|
T Consensus        72 ~l~~H~~~H~g   82 (82)
T 2kmk_A           72 NLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHhhCC
Confidence            99999999875

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=8e-16  Score=85.25  Aligned_cols=65  Identities=31%  Similarity=0.512  Sum_probs=61.7

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceec
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC  103 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C  103 (143)
                      ..++++|.|.+|++.|.....|..|++.|.+.++|.|..|++.|.....|..|+++|++++||.|
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            45578899999999999999999999999999999999999999999999999999999999987

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=4.4e-16  Score=83.73  Aligned_cols=61  Identities=15%  Similarity=0.203  Sum_probs=56.7

Q ss_pred             hhcCCCCCccCCCCCCCCCChHHHHHHHHH-h-cCCCceecccccccccchHHHHHHHHHHhc
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKR-H-TGLKAHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~-h-~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      ++|.+++||.|..|++.|.....|..|++. | ++++||.|+.|++.|.+.+.|..|++.+|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            467888999999999999999999999987 7 689999999999999999999999999885

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=8.3e-16  Score=91.43  Aligned_cols=96  Identities=17%  Similarity=0.236  Sum_probs=75.7

Q ss_pred             CCCCCccccCCcchhhhccchhhHHHhhhcccCCCCCCCCCCc-ceeccCCCCcc--CCcchHHHhhhhcCCCCCccCCC
Q psy3948           1 MFVDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSY-NYACFICTYHT--RKHGDMIGHMRKHTGVKPLKCSS   77 (143)
Q Consensus         1 ~~~~~~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~-~~~c~~c~~~~--~~~~~l~~h~~~~~~~~~~~c~~   77 (143)
                      +|.++++|+|+.|++.|.......++... .      .+..+. .+.|.+|++.|  .....|..|++.|.+++||.|..
T Consensus        13 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-~------~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~   85 (115)
T 2dmi_A           13 IFTGASKFRCKDCSAAYDTLVELTVHMNE-T------GHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMY   85 (115)
T ss_dssp             CCCCCCSEEBSSSSCEESSHHHHHHHHHH-T------CCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSS
T ss_pred             eeCCCCCEECCccCchhcCHHHHHHHHHH-h------CccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCC
Confidence            46788999999999999888774443221 0      012223 34599999998  88899999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhcCCCceec
Q psy3948          78 CNYSCSTKSALSVHQKRHTGLKAHKC  103 (143)
Q Consensus        78 c~~~f~~~~~l~~h~~~h~~e~~~~C  103 (143)
                      |++.|.....|..|++.|........
T Consensus        86 C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           86 CGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             SCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             CCCccCCHHHHHHHHHHhCCcccCCC
Confidence            99999999999999998766554443

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=2.6e-15  Score=83.45  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=62.2

Q ss_pred             CCCCCccCCC--CCCCCCChHHHHHHHH-HhcCCCceeccc--ccccccchHHHHHHHHHHhcCCCccccee
Q psy3948          68 TGVKPLKCSS--CNYSCSTKSALSVHQK-RHTGLKAHKCAN--VIIIAIMYHILEIMLEDIQGRDHINVNIA  134 (143)
Q Consensus        68 ~~~~~~~c~~--c~~~f~~~~~l~~h~~-~h~~e~~~~C~~--C~~~f~~~s~l~~h~~~~~~~~~~~~~~~  134 (143)
                      ++.++|.|..  |++.|.....|..|++ .|+++++|.|..  |++.|...+.|..|+++|+++++|.|...
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   74 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS   74 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSS
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCC
Confidence            4567898886  9999999999999999 799999999999  99999999999999999999999999843

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.60  E-value=1.7e-15  Score=79.04  Aligned_cols=56  Identities=16%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCC
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      ||.|..|++.|.....|..|+++|++++||.|+.|++.|...+.|..|++.|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            57899999999999999999999999999999999999999999999999888764

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.9e-15  Score=89.13  Aligned_cols=86  Identities=22%  Similarity=0.453  Sum_probs=73.4

Q ss_pred             CCCCccccCCcchhhhccchhhHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCC
Q psy3948           2 FVDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYS   81 (143)
Q Consensus         2 ~~~~~~~~C~~C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~   81 (143)
                      |.++++|.| .|++.|.......++...         +..+++|.|++|++.|.....|..|++.|.+.++|.|..|++.
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~---------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSM---------HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR   74 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHH---------HSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCE
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHH---------cCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcch
Confidence            678999999 999999887763333210         2345779999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHhcC
Q psy3948          82 CSTKSALSVHQKRHTG   97 (143)
Q Consensus        82 f~~~~~l~~h~~~h~~   97 (143)
                      |.....|..|++.|..
T Consensus        75 f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           75 FMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             ESCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHccc
Confidence            9999999999987753

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.3e-15  Score=88.76  Aligned_cols=69  Identities=28%  Similarity=0.397  Sum_probs=62.7

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhh-hc---CCCCCccCCCCCCCCCChHHHHHH-HHHhcCCCceeccccc
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMR-KH---TGVKPLKCSSCNYSCSTKSALSVH-QKRHTGLKAHKCANVI  107 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~---~~~~~~~c~~c~~~f~~~~~l~~h-~~~h~~e~~~~C~~C~  107 (143)
                      ..++++|.|..|++.|.....|..|++ .|   .+++||.|..|++.|.....|..| +++|++++||.|..+.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            356789999999999999999999987 58   568999999999999999999999 8999999999998744

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.57  E-value=4.4e-15  Score=81.59  Aligned_cols=63  Identities=29%  Similarity=0.553  Sum_probs=59.7

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCce
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAH  101 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~  101 (143)
                      ..++++|.|..|++.|.....|..|++.|.+.++|.|..|++.|.....|..|+++|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            456788999999999999999999999999999999999999999999999999999999986

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=3.9e-15  Score=82.58  Aligned_cols=63  Identities=17%  Similarity=0.269  Sum_probs=56.2

Q ss_pred             hcCCCCCccCCCCCCCCCChHHHHHHHHHhcC---CCceecccccccccchHHHHHHHHHHhcCCC
Q psy3948          66 KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG---LKAHKCANVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus        66 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~---e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      .|++++||.|..|++.|.....|..|++.|++   +++|.|..|++.|...+.|..|++.+|....
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~   66 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL   66 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            36788999999999999999999999999985   8999999999999999999999976664443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=1e-14  Score=76.78  Aligned_cols=56  Identities=18%  Similarity=0.246  Sum_probs=50.4

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHH-HHhcC
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLE-DIQGR  126 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~-~~~~~  126 (143)
                      +||.|..|++.|.....|..|++.|++++||.|+.|++.|.+.+.|..|++ .|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            478999999999999999999999999999999999999999999999974 55543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=2.6e-14  Score=80.49  Aligned_cols=72  Identities=17%  Similarity=0.279  Sum_probs=65.5

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCCC----CCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccc
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTGV----KPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIA  110 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~----~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f  110 (143)
                      +.++++|.|.+|++.|.....|..|++.+...    ++|.|..|++.|.....|..|++.|++++++.|..|+..|
T Consensus        10 H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             ecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            46678899999999999999999998876665    7899999999999999999999999999999999998765

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.51  E-value=3.7e-14  Score=82.04  Aligned_cols=86  Identities=29%  Similarity=0.610  Sum_probs=71.9

Q ss_pred             CCCccccCCc--chhhhccchhhHHHhhhcccCCCCCCCCCCcceecc--CCCCccCCcchHHHhhhhcCCCCCccCCCC
Q psy3948           3 VDHTILKCTF--CNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACF--ICTYHTRKHGDMIGHMRKHTGVKPLKCSSC   78 (143)
Q Consensus         3 ~~~~~~~C~~--C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c   78 (143)
                      ...++|.|+.  |++.|.......++...         +..+++|.|+  .|++.|.....|..|++.|.++++|.|..|
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~---------h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   81 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRT---------HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC   81 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHH---------HSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSS
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHH---------hCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCC
Confidence            3567899997  99999877763333210         2445779996  699999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhcC
Q psy3948          79 NYSCSTKSALSVHQKRHTG   97 (143)
Q Consensus        79 ~~~f~~~~~l~~h~~~h~~   97 (143)
                      ++.|.....|..|+++|++
T Consensus        82 ~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           82 NRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CCBCSSHHHHHHHHHHHCC
T ss_pred             cCccCCHHHHHHHHHHhCC
Confidence            9999999999999999864

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.50  E-value=1.2e-14  Score=82.46  Aligned_cols=62  Identities=21%  Similarity=0.193  Sum_probs=57.7

Q ss_pred             CCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          70 VKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        70 ~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      ++||.|..|++.|.....|..|+++|++++||.|..|++.|...+.|..|++.+++ .+|.|.
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~   62 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILED   62 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHH
Confidence            46899999999999999999999999999999999999999999999999999995 666666

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=1.7e-14  Score=78.94  Aligned_cols=61  Identities=21%  Similarity=0.305  Sum_probs=55.6

Q ss_pred             hhhcCCCCCccCC--CCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHh
Q psy3948          64 MRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        64 ~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      ...+.+.++|.|+  .|++.|.....|..|++.|+++++|.|..|++.|...+.|..|+++|+
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             hccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            3457788999997  599999999999999999999999999999999999999999998763

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=2.1e-14  Score=77.15  Aligned_cols=60  Identities=15%  Similarity=0.176  Sum_probs=54.3

Q ss_pred             cCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc-cccccccchHHHHHHHHHHhcCCC
Q psy3948          67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA-NVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus        67 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~-~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      ..+.+||.|..|++.|. ...|..|+++ ++++||.|. .|++.|..++.|..|+++|....+
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            45678899999999999 9999999999 999999999 999999999999999998876654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=6.9e-14  Score=75.91  Aligned_cols=63  Identities=25%  Similarity=0.450  Sum_probs=59.1

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCce
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAH  101 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~  101 (143)
                      +.++++|.|.+|++.|.....|..|++.|.+.++|.|..|++.|.....|..|++.|++++|.
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            456788999999999999999999999999999999999999999999999999999998875

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.1e-13  Score=79.42  Aligned_cols=61  Identities=18%  Similarity=0.090  Sum_probs=52.9

Q ss_pred             CccCCCCCCCCCChHHHHHHHHH-hcCCCc--------eecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKR-HTGLKA--------HKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~-h~~e~~--------~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      .+.|..|++.|.....|..|++. |+++++        |.|..|++.|...+.|..|+++|+++++|.|.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            45788888888888888888887 888777        89999999999999999999999999998875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.47  E-value=6.3e-14  Score=79.38  Aligned_cols=83  Identities=25%  Similarity=0.570  Sum_probs=71.5

Q ss_pred             CccccCCc--chhhhccchhhHHHhhhcccCCCCCCCCCCcceecc--CCCCccCCcchHHHhhhhcCCCCCccCCCCCC
Q psy3948           5 HTILKCTF--CNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACF--ICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNY   80 (143)
Q Consensus         5 ~~~~~C~~--C~~~f~~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~   80 (143)
                      ..+|.|+.  |++.|.......++..         .+.++++|.|+  .|++.|.....|..|++.|.++++|.|+.|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~---------~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   73 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLR---------THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDR   73 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHT---------TSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHH---------hcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCc
Confidence            56899999  9999988777554432         14556789997  59999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhc
Q psy3948          81 SCSTKSALSVHQKRHT   96 (143)
Q Consensus        81 ~f~~~~~l~~h~~~h~   96 (143)
                      .|.....|..|+++|.
T Consensus        74 ~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           74 AFSRSDHLALHMKRHF   89 (89)
T ss_dssp             EESSHHHHHHHGGGGC
T ss_pred             ccCCHHHHHHHHHhhC
Confidence            9999999999998873

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.44  E-value=1.4e-13  Score=77.45  Aligned_cols=61  Identities=18%  Similarity=0.300  Sum_probs=55.8

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHH-HHhcCCC
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQ-KRHTGLK   99 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~-~~h~~e~   99 (143)
                      ....+++.|++|++.|.....|..|+++|.+++||.|..|++.|.....|..|+ +.|++|.
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            345677999999999999999999999999999999999999999999999996 5788775

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.8e-13  Score=74.62  Aligned_cols=61  Identities=33%  Similarity=0.522  Sum_probs=57.5

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +.++++|.|++|++.|.....|..|++.|.+++||.|..|++.|.....|..|+++|+++.
T Consensus         9 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            5677899999999999999999999999999999999999999999999999999998764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=3.4e-13  Score=77.30  Aligned_cols=63  Identities=21%  Similarity=0.255  Sum_probs=58.2

Q ss_pred             cceeccCCCCccCCcchHHHhhhh-cCCCCC--------ccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          43 YNYACFICTYHTRKHGDMIGHMRK-HTGVKP--------LKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        43 ~~~~c~~c~~~~~~~~~l~~h~~~-~~~~~~--------~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      ..++|..|++.|.....|..|++. |.+.++        |.|..|++.|.....|..|+++|++++||.|..
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSCC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            346799999999999999999997 998887        899999999999999999999999999999963

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.41  E-value=2.8e-13  Score=70.43  Aligned_cols=56  Identities=36%  Similarity=0.648  Sum_probs=53.0

Q ss_pred             ceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          44 NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        44 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +|.|+.|++.|.....|..|++.|.+.+||.|..|++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            47899999999999999999999999999999999999999999999999998875

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.39  E-value=3e-13  Score=70.32  Aligned_cols=56  Identities=36%  Similarity=0.620  Sum_probs=50.0

Q ss_pred             CcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcC
Q psy3948          42 SYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG   97 (143)
Q Consensus        42 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~   97 (143)
                      +++|.|++|++.|.....|..|++.|.+++||.|+.|++.|.....|..|++.|.+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            46789999999999999999999999999999999999999999999999998753

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.38  E-value=8.1e-13  Score=74.00  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=54.8

Q ss_pred             CccC--CCCCCCCCChHHHHHHHHHhcCCCceeccc--ccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          72 PLKC--SSCNYSCSTKSALSVHQKRHTGLKAHKCAN--VIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        72 ~~~c--~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~--C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      ||.|  ..|++.|.....|..|++.|++++||.|+.  |++.|.+.+.|..|++.|++   |.|..
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~   63 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKK   63 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCC
Confidence            5789  889999999999999999999999999988  99999999999999999998   66654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=1.1e-12  Score=75.62  Aligned_cols=61  Identities=15%  Similarity=0.304  Sum_probs=55.2

Q ss_pred             CCcceeccCCCCcc-CCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHH-HHHhcCCCcee
Q psy3948          41 KSYNYACFICTYHT-RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVH-QKRHTGLKAHK  102 (143)
Q Consensus        41 ~~~~~~c~~c~~~~-~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h-~~~h~~e~~~~  102 (143)
                      .+++|.|+.|++.| .....|..|++.| +++||.|..|++.|.....|..| +++|+++..+.
T Consensus        31 ~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~~   93 (96)
T 2ctd_A           31 DKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGP   93 (96)
T ss_dssp             HTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSCS
T ss_pred             CCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCCC
Confidence            35679999999999 9999999999999 99999999999999999999999 88998765443

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=2.3e-13  Score=78.74  Aligned_cols=66  Identities=21%  Similarity=0.319  Sum_probs=60.2

Q ss_pred             CCCCcceeccCCCCccC-CcchHHHhhhhcCC-CCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          39 PDKSYNYACFICTYHTR-KHGDMIGHMRKHTG-VKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~-~~~~l~~h~~~~~~-~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      +..+++|.|.+|++.|. ....|..|++.|.+ +++|.|..|++.|.....|..|++.|++++|+...
T Consensus        19 h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             TTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             hccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCCC
Confidence            45668899999999999 99999999999998 89999999999999999999999999999986543

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=6.3e-16  Score=84.58  Aligned_cols=68  Identities=21%  Similarity=0.219  Sum_probs=52.8

Q ss_pred             chHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          58 GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        58 ~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      ..|..|++.|.+++||.|..|++.|.....|..       +++|.|..|++.|...+.|..|++.|+++++|.|.
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~   71 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPS   71 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCC
Confidence            345667777888888888888887777665554       67888888888888888888888888888888775

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.35  E-value=3.1e-13  Score=67.27  Aligned_cols=43  Identities=16%  Similarity=0.050  Sum_probs=36.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888888888888888888888888888888888888864

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.35  E-value=2.1e-13  Score=70.25  Aligned_cols=51  Identities=10%  Similarity=-0.053  Sum_probs=42.2

Q ss_pred             CCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcc
Q psy3948          80 YSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHIN  130 (143)
Q Consensus        80 ~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~  130 (143)
                      +.|.....|..|++.|++++||.|..|++.|...+.|..|+++|+++++|+
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            456666677778888888899999999999999999999998888888763

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.7e-13  Score=66.95  Aligned_cols=43  Identities=19%  Similarity=0.072  Sum_probs=35.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            5567788888888888888888888888888888888888864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.1e-13  Score=65.87  Aligned_cols=41  Identities=12%  Similarity=-0.038  Sum_probs=29.8

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +++|++++||.|..|++.|.+.+.|..|+++|+++++|.|+
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45567777777777777777777777777777777777663

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=4.2e-13  Score=66.77  Aligned_cols=43  Identities=12%  Similarity=-0.001  Sum_probs=34.5

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5567778888888888888888888888888888888888764

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.9e-13  Score=66.48  Aligned_cols=43  Identities=16%  Similarity=0.026  Sum_probs=36.6

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5667888888999889999998889999988888888888864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.33  E-value=1.1e-12  Score=65.23  Aligned_cols=40  Identities=15%  Similarity=-0.012  Sum_probs=19.7

Q ss_pred             HHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          93 KRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        93 ~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      ++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emk_A            5 SSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCC
T ss_pred             CccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            3444444555555555555555555555555444444443

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.3e-13  Score=66.71  Aligned_cols=43  Identities=14%  Similarity=0.016  Sum_probs=35.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5567788888888888888888888888888888888888764

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.33  E-value=1.1e-12  Score=71.41  Aligned_cols=58  Identities=21%  Similarity=0.252  Sum_probs=51.2

Q ss_pred             hcCCCCCccCCC--CCCCCCChHHHHHHHHHhcCCCceeccc--ccccccchHHHHHHHHHH
Q psy3948          66 KHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKCAN--VIIIAIMYHILEIMLEDI  123 (143)
Q Consensus        66 ~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~h~~e~~~~C~~--C~~~f~~~s~l~~h~~~~  123 (143)
                      .....++|.|..  |++.|.....|..|++.|++++||.|..  |++.|...+.|..|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            345667899988  9999999999999999999999999964  999999999999997654

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-12  Score=65.07  Aligned_cols=44  Identities=25%  Similarity=0.386  Sum_probs=29.4

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666666655

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.5e-13  Score=66.33  Aligned_cols=43  Identities=14%  Similarity=-0.058  Sum_probs=30.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|.+.+.|..|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4556677777777777777777777777777777777776653

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.33  E-value=1.1e-12  Score=65.16  Aligned_cols=43  Identities=42%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      +++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            4 GSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3444444444454454444444444444444444444444443

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.1e-12  Score=65.17  Aligned_cols=44  Identities=32%  Similarity=0.438  Sum_probs=28.5

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            44556666666666666666666666666666666666666655

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.6e-12  Score=64.61  Aligned_cols=44  Identities=41%  Similarity=0.526  Sum_probs=22.8

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34444555555555555555555555555555555555555444

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.1e-13  Score=66.15  Aligned_cols=43  Identities=12%  Similarity=-0.091  Sum_probs=30.5

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|.+.+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4556677777777777777777777777777777777777653

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=64.96  Aligned_cols=44  Identities=30%  Similarity=0.416  Sum_probs=28.9

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            45556666666666666666666666666666666666666655

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.3e-13  Score=66.40  Aligned_cols=43  Identities=14%  Similarity=0.000  Sum_probs=37.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667888899999999999999999999999999888888864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=9.6e-13  Score=64.78  Aligned_cols=41  Identities=10%  Similarity=0.009  Sum_probs=26.9

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS   42 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34566666666666666666666666666666666666664

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.4e-12  Score=64.81  Aligned_cols=43  Identities=33%  Similarity=0.409  Sum_probs=21.2

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      +++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3444444455555555555555555555555555555554443

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.5e-13  Score=66.07  Aligned_cols=43  Identities=16%  Similarity=0.033  Sum_probs=32.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556777777777777777777777777777777777777764

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.3e-13  Score=66.13  Aligned_cols=43  Identities=14%  Similarity=0.063  Sum_probs=32.7

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.+
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4556777778888888888888888888887887777777764

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.4e-12  Score=64.83  Aligned_cols=44  Identities=30%  Similarity=0.443  Sum_probs=25.8

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34455555566666666666666666666666666666665554

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=7.5e-13  Score=65.19  Aligned_cols=44  Identities=34%  Similarity=0.463  Sum_probs=41.4

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            46778999999999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.7e-13  Score=66.00  Aligned_cols=43  Identities=14%  Similarity=0.032  Sum_probs=28.5

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|.+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCC
Confidence            4455666666777777777777777777766666666666653

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.7e-13  Score=66.97  Aligned_cols=43  Identities=16%  Similarity=-0.010  Sum_probs=28.6

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4455666666777777777777777777766666666666653

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.1e-12  Score=65.19  Aligned_cols=43  Identities=37%  Similarity=0.553  Sum_probs=20.8

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      +++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             cCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            3444444444555555445444555555444444444444443

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.3e-12  Score=64.90  Aligned_cols=41  Identities=15%  Similarity=-0.068  Sum_probs=20.6

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eq4_A            4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCC
T ss_pred             cccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCC
Confidence            33444555555555555555555555555555555555443

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.5e-12  Score=64.68  Aligned_cols=44  Identities=32%  Similarity=0.475  Sum_probs=25.4

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34455555556666666666666666666555555555655554

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.1e-12  Score=65.11  Aligned_cols=42  Identities=19%  Similarity=0.084  Sum_probs=26.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSS
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344556666666666666666666666666666666666654

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.31  E-value=4.1e-13  Score=65.44  Aligned_cols=40  Identities=10%  Similarity=-0.012  Sum_probs=29.2

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      +++|++++||.|..|++.|.+.+.|..|+++|+++++|.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            4556777777777777777777777777777777777766

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8e-13  Score=65.71  Aligned_cols=42  Identities=17%  Similarity=0.103  Sum_probs=28.6

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            445666667777777777777777777777777766666665

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.2e-13  Score=66.77  Aligned_cols=43  Identities=14%  Similarity=0.083  Sum_probs=32.7

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|+++++|.|..|++.|...+.|..|+++|+++++|.|.+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            4566777777888888888888888888877777777777764

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.6e-13  Score=65.79  Aligned_cols=42  Identities=12%  Similarity=-0.040  Sum_probs=27.4

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|.+.+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSS
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCC
Confidence            445566666666666666666666666666666666666664

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.5e-12  Score=64.70  Aligned_cols=44  Identities=36%  Similarity=0.493  Sum_probs=28.6

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666666655

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=2.3e-12  Score=67.57  Aligned_cols=56  Identities=30%  Similarity=0.592  Sum_probs=51.5

Q ss_pred             cceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHH-HHhcCC
Q psy3948          43 YNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQ-KRHTGL   98 (143)
Q Consensus        43 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~-~~h~~e   98 (143)
                      ++|.|+.|++.|.....|..|++.|.+.+||.|+.|++.|.....|..|+ +.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            36889999999999999999999999999999999999999999999996 678765

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=65.01  Aligned_cols=42  Identities=14%  Similarity=0.029  Sum_probs=23.6

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS   44 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            334455555555555555555555555555555555555554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2e-12  Score=71.52  Aligned_cols=66  Identities=23%  Similarity=0.423  Sum_probs=57.5

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCC---CCCccCCCCCCCCCChHHHHHHH-HHhcCCCceecc
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTG---VKPLKCSSCNYSCSTKSALSVHQ-KRHTGLKAHKCA  104 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~---~~~~~c~~c~~~f~~~~~l~~h~-~~h~~e~~~~C~  104 (143)
                      +.++++|.|.+|++.|.....|..|++.|.+   +++|.|..|++.|.....|..|+ ..|.++++....
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence            4567889999999999999999999999986   78999999999999999999998 578887776543

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=7.1e-13  Score=65.90  Aligned_cols=43  Identities=16%  Similarity=0.041  Sum_probs=37.8

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCSC
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5677888999999999999999999999999999999998864

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.4e-12  Score=64.79  Aligned_cols=42  Identities=14%  Similarity=-0.025  Sum_probs=25.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSS
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCC
Confidence            344555566666666666666666666666666666666554

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.3e-12  Score=64.97  Aligned_cols=45  Identities=29%  Similarity=0.426  Sum_probs=41.6

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.1e-12  Score=65.28  Aligned_cols=40  Identities=15%  Similarity=0.068  Sum_probs=19.2

Q ss_pred             HHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          93 KRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        93 ~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      ++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emf_A            5 SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCC
T ss_pred             cccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3444444444444444444444444444444444444443

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.2e-13  Score=66.16  Aligned_cols=43  Identities=12%  Similarity=-0.081  Sum_probs=34.5

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567778888888888888888888888888888888888764

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.30  E-value=5.1e-13  Score=66.44  Aligned_cols=42  Identities=17%  Similarity=0.044  Sum_probs=24.8

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS   44 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSS
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            344555566666666666666666666666666666666554

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.8e-13  Score=66.51  Aligned_cols=43  Identities=14%  Similarity=0.065  Sum_probs=33.5

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|.+.+.|..|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4566777888888888888888888888888888888887764

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.6e-12  Score=64.56  Aligned_cols=44  Identities=36%  Similarity=0.455  Sum_probs=24.6

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34455555555555555555555555555555555555555544

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.30  E-value=7.1e-13  Score=65.92  Aligned_cols=45  Identities=31%  Similarity=0.442  Sum_probs=42.4

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467889999999999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=9e-13  Score=65.55  Aligned_cols=42  Identities=10%  Similarity=-0.103  Sum_probs=29.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|.+.+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS   44 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCS
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCC
Confidence            445666677777777777777777777777777777776665

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.30  E-value=1.1e-12  Score=65.14  Aligned_cols=44  Identities=43%  Similarity=0.594  Sum_probs=23.3

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34445555555555555555555555555555555555555544

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.3e-12  Score=64.95  Aligned_cols=45  Identities=36%  Similarity=0.471  Sum_probs=41.9

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=65.10  Aligned_cols=43  Identities=37%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      ++.|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             ccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            3444444455555555555555555555545555555554443

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.1e-13  Score=65.01  Aligned_cols=42  Identities=14%  Similarity=0.056  Sum_probs=33.6

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            456777888888888888888888888888888888887763

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.30  E-value=1.4e-12  Score=64.85  Aligned_cols=45  Identities=38%  Similarity=0.428  Sum_probs=41.6

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999877

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.2e-13  Score=66.72  Aligned_cols=43  Identities=14%  Similarity=-0.004  Sum_probs=33.5

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4566777888888888888888888888888888888887764

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=9e-13  Score=65.54  Aligned_cols=42  Identities=21%  Similarity=0.161  Sum_probs=34.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            556777888888888888888888888888888888888875

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.1e-12  Score=65.13  Aligned_cols=45  Identities=31%  Similarity=0.437  Sum_probs=41.8

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.6e-12  Score=64.61  Aligned_cols=41  Identities=15%  Similarity=-0.066  Sum_probs=23.5

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytm_A            4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS   44 (46)
T ss_dssp             CCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCC
T ss_pred             CcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            34455555555555555555555555555555555555554

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.3e-12  Score=65.01  Aligned_cols=45  Identities=24%  Similarity=0.346  Sum_probs=41.8

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.4e-12  Score=64.84  Aligned_cols=43  Identities=30%  Similarity=0.415  Sum_probs=21.7

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      +++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            4 GSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3444445555555555555555555555555555555555443

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.2e-12  Score=65.07  Aligned_cols=43  Identities=35%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      +++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            4 GSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3344444444444444444444444444444444444444443

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.30  E-value=1.5e-12  Score=64.71  Aligned_cols=44  Identities=32%  Similarity=0.409  Sum_probs=22.2

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            33444455555555555555555555555555555555555443

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.7e-12  Score=64.53  Aligned_cols=45  Identities=31%  Similarity=0.395  Sum_probs=41.5

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.4e-12  Score=64.86  Aligned_cols=45  Identities=29%  Similarity=0.421  Sum_probs=41.6

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|++.|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.2e-13  Score=66.74  Aligned_cols=43  Identities=16%  Similarity=0.008  Sum_probs=27.6

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            3455666666666666666666666666666666666666653

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.7e-13  Score=66.60  Aligned_cols=43  Identities=12%  Similarity=0.006  Sum_probs=31.6

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556777777777777777777777777777777777777754

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=7.5e-13  Score=65.19  Aligned_cols=42  Identities=10%  Similarity=0.031  Sum_probs=34.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            556778888888888888888888888888888888888763

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.2e-13  Score=65.88  Aligned_cols=45  Identities=40%  Similarity=0.515  Sum_probs=42.4

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|++.|.+++||.|..|++.|.....|..|++.|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999987

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.1e-13  Score=64.60  Aligned_cols=41  Identities=15%  Similarity=0.020  Sum_probs=33.7

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      |+++|++++||.|..|++.|.+.+.|..|++.|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            45667888888888888888888888888888888888765

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=2.2e-12  Score=68.97  Aligned_cols=58  Identities=21%  Similarity=0.381  Sum_probs=52.8

Q ss_pred             CCCcceeccCCCCccCCcchHHHhhhh-c-CCCCCccCCCCCCCCCChHHHHHHHHHhcC
Q psy3948          40 DKSYNYACFICTYHTRKHGDMIGHMRK-H-TGVKPLKCSSCNYSCSTKSALSVHQKRHTG   97 (143)
Q Consensus        40 ~~~~~~~c~~c~~~~~~~~~l~~h~~~-~-~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~   97 (143)
                      .++++|.|+.|++.|.....|..|++. | .+.+||.|+.|++.|.....|..|++.+.+
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            456889999999999999999999987 7 688999999999999999999999998765

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1e-12  Score=65.32  Aligned_cols=45  Identities=31%  Similarity=0.417  Sum_probs=42.5

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999987

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.5e-13  Score=66.62  Aligned_cols=43  Identities=16%  Similarity=0.092  Sum_probs=27.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3445666666666666666666666666666666666666653

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.8e-12  Score=64.34  Aligned_cols=43  Identities=28%  Similarity=0.396  Sum_probs=20.5

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      ++.|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            4 GSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3344444444444444444444444444444444444444443

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.3e-12  Score=64.95  Aligned_cols=41  Identities=17%  Similarity=0.004  Sum_probs=22.2

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq0_A            4 GSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS   44 (46)
T ss_dssp             CCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCS
T ss_pred             CcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            34455555555555555555555555555555555555554

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.2e-13  Score=66.75  Aligned_cols=43  Identities=14%  Similarity=0.019  Sum_probs=28.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4455666666666666666666666666666666666666653

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.29  E-value=7.8e-13  Score=65.77  Aligned_cols=43  Identities=16%  Similarity=0.042  Sum_probs=40.4

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999874

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.7e-12  Score=64.50  Aligned_cols=41  Identities=12%  Similarity=-0.016  Sum_probs=23.6

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +++|++++||.|..|++.|...+.|..|++.|+++++|.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2enc_A            4 GSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS   44 (46)
T ss_dssp             SSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSC
T ss_pred             CCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCC
Confidence            34555555566655666666555666665555555555554

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8.1e-13  Score=65.70  Aligned_cols=42  Identities=17%  Similarity=0.043  Sum_probs=27.7

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            445566666666666666666666666666666666666664

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.3e-12  Score=64.95  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=20.9

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      +++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             cCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3444444445555555555555555555444444445544443

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.2e-12  Score=65.00  Aligned_cols=45  Identities=27%  Similarity=0.471  Sum_probs=42.4

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.29  E-value=1.9e-12  Score=64.31  Aligned_cols=43  Identities=40%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      +++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3444444555555555555555555555555555555555443

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2e-12  Score=64.26  Aligned_cols=42  Identities=17%  Similarity=0.091  Sum_probs=25.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPS   44 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTT
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344555566666666666666666666666666666666554

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.6e-12  Score=64.60  Aligned_cols=42  Identities=17%  Similarity=0.063  Sum_probs=24.9

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|.+.+.|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344555566666666666666666666666666666665554

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.3e-12  Score=64.98  Aligned_cols=45  Identities=31%  Similarity=0.449  Sum_probs=41.6

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999887

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.28  E-value=1e-12  Score=63.99  Aligned_cols=41  Identities=7%  Similarity=-0.074  Sum_probs=32.8

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            34567788888888888888888888888888888888765

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.9e-13  Score=66.53  Aligned_cols=42  Identities=12%  Similarity=0.021  Sum_probs=25.6

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            344555666666666666666666666666666666666654

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.1e-13  Score=66.84  Aligned_cols=43  Identities=16%  Similarity=-0.027  Sum_probs=28.5

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            3455666667777777777777777777766666666666653

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1e-12  Score=65.35  Aligned_cols=44  Identities=30%  Similarity=0.451  Sum_probs=41.8

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5.1e-13  Score=66.42  Aligned_cols=43  Identities=16%  Similarity=-0.010  Sum_probs=30.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            4456667777777777777777777777777777777777654

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.8e-13  Score=66.55  Aligned_cols=45  Identities=36%  Similarity=0.477  Sum_probs=42.4

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=9.2e-13  Score=65.49  Aligned_cols=43  Identities=14%  Similarity=-0.097  Sum_probs=40.2

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999874

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=6e-13  Score=66.19  Aligned_cols=45  Identities=33%  Similarity=0.409  Sum_probs=42.3

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=64.62  Aligned_cols=43  Identities=28%  Similarity=0.383  Sum_probs=21.4

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      +++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             cccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3444444555555555555555555555555555555555443

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5.3e-13  Score=66.39  Aligned_cols=42  Identities=14%  Similarity=-0.020  Sum_probs=26.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344556666666666666666666666666666666666664

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.4e-13  Score=66.69  Aligned_cols=42  Identities=17%  Similarity=0.037  Sum_probs=26.4

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            344556666666666666666666666666666666666664

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8.6e-13  Score=65.57  Aligned_cols=45  Identities=27%  Similarity=0.350  Sum_probs=42.5

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999987

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.9e-13  Score=66.51  Aligned_cols=43  Identities=16%  Similarity=-0.021  Sum_probs=27.9

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4455666666666666666666666666666666666666653

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.2e-12  Score=64.12  Aligned_cols=41  Identities=15%  Similarity=-0.009  Sum_probs=25.3

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +++|++++||.|..|++.|...+.|..|++.|+++++|.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em8_A            4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS   44 (46)
T ss_dssp             CCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSC
T ss_pred             CCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            34555666666666666666666666666666666666554

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.27  E-value=3e-12  Score=65.88  Aligned_cols=47  Identities=30%  Similarity=0.372  Sum_probs=39.7

Q ss_pred             hcCCCCCccCCCCCCCCCChHHHHHHHH-HhcCCCceecccccccccc
Q psy3948          66 KHTGVKPLKCSSCNYSCSTKSALSVHQK-RHTGLKAHKCANVIIIAIM  112 (143)
Q Consensus        66 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~h~~e~~~~C~~C~~~f~~  112 (143)
                      .+.+++||.|..|++.|.....|..|++ +|++++||.|..|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4667788888888888888888998886 8888889999999988874

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=64.97  Aligned_cols=42  Identities=14%  Similarity=0.059  Sum_probs=31.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCC
Confidence            455677777777777777777777777777777777777765

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.1e-12  Score=65.17  Aligned_cols=45  Identities=31%  Similarity=0.400  Sum_probs=42.4

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467889999999999999999999999999999999999999987

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.7e-13  Score=66.58  Aligned_cols=41  Identities=15%  Similarity=-0.010  Sum_probs=21.5

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            4 GSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            34445555555555555555555555555555555555544

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.3e-12  Score=64.97  Aligned_cols=44  Identities=30%  Similarity=0.437  Sum_probs=41.9

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=64.43  Aligned_cols=42  Identities=14%  Similarity=0.037  Sum_probs=24.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344555555555555555555555555555555555555554

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=64.77  Aligned_cols=43  Identities=21%  Similarity=0.125  Sum_probs=40.2

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6678999999999999999999999999999999999999863

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=6e-13  Score=65.51  Aligned_cols=42  Identities=12%  Similarity=0.044  Sum_probs=32.5

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            556777788888888888888888888888888777777763

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.2e-12  Score=63.70  Aligned_cols=44  Identities=27%  Similarity=0.382  Sum_probs=24.6

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHH-HhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQK-RHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|++ +|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            3445555555555555555555555555555 5555555555544

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=6.1e-13  Score=66.14  Aligned_cols=43  Identities=16%  Similarity=0.028  Sum_probs=40.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.1e-12  Score=65.24  Aligned_cols=42  Identities=14%  Similarity=0.067  Sum_probs=26.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344556666666666666666666666666666666666654

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=9.7e-13  Score=65.40  Aligned_cols=43  Identities=14%  Similarity=0.040  Sum_probs=40.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCC
Confidence            6678999999999999999999999999999999999999863

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.8e-12  Score=64.39  Aligned_cols=44  Identities=20%  Similarity=0.173  Sum_probs=41.9

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=9e-13  Score=65.48  Aligned_cols=43  Identities=16%  Similarity=0.015  Sum_probs=40.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS   45 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999874

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=9.1e-13  Score=65.48  Aligned_cols=43  Identities=16%  Similarity=0.092  Sum_probs=40.2

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999874

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.7e-12  Score=63.76  Aligned_cols=45  Identities=33%  Similarity=0.488  Sum_probs=41.1

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999865

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=9e-13  Score=64.90  Aligned_cols=42  Identities=10%  Similarity=-0.076  Sum_probs=36.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            556788888999999999999999999999999888888874

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=64.39  Aligned_cols=44  Identities=36%  Similarity=0.517  Sum_probs=40.9

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            66788999999999999999999999999999999999999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.25  E-value=7.4e-13  Score=65.81  Aligned_cols=43  Identities=14%  Similarity=0.101  Sum_probs=40.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTT
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6678999999999999999999999999999999999999874

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.4e-12  Score=64.86  Aligned_cols=43  Identities=35%  Similarity=0.521  Sum_probs=21.0

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      ++.|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3444444445555555555555555555444555555544443

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.4e-12  Score=64.80  Aligned_cols=42  Identities=17%  Similarity=0.031  Sum_probs=24.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCS
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCC
Confidence            344555555566666666666666666665555555555554

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1e-12  Score=65.35  Aligned_cols=43  Identities=14%  Similarity=0.057  Sum_probs=40.2

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS   45 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999874

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=9.7e-13  Score=65.39  Aligned_cols=43  Identities=16%  Similarity=0.033  Sum_probs=40.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCC
Confidence            6678999999999999999999999999999999999999874

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.2e-12  Score=65.02  Aligned_cols=45  Identities=31%  Similarity=0.480  Sum_probs=42.5

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467889999999999999999999999999999999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.25  E-value=8.6e-13  Score=65.58  Aligned_cols=43  Identities=14%  Similarity=0.062  Sum_probs=40.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCC
Confidence            6678999999999999999999999999999999999999874

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.3e-12  Score=64.37  Aligned_cols=41  Identities=15%  Similarity=0.086  Sum_probs=32.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            45677778888888888888888888888888887777765

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=7.6e-13  Score=65.11  Aligned_cols=41  Identities=17%  Similarity=0.073  Sum_probs=23.5

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            34455555556666666666666666666555555555554

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.1e-12  Score=65.25  Aligned_cols=43  Identities=14%  Similarity=-0.050  Sum_probs=40.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999874

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=7.9e-13  Score=65.70  Aligned_cols=43  Identities=14%  Similarity=0.028  Sum_probs=32.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|++.|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556777777777777777777777777777777777777753

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.5e-12  Score=63.90  Aligned_cols=44  Identities=30%  Similarity=0.442  Sum_probs=41.8

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56789999999999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.2e-12  Score=65.05  Aligned_cols=43  Identities=19%  Similarity=-0.014  Sum_probs=40.2

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999874

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.1e-12  Score=63.54  Aligned_cols=40  Identities=10%  Similarity=-0.037  Sum_probs=27.9

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      +++|++++||.|..|++.|...+.|..|+++|+++++|.|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            4456667777777777777777777777777777777665

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.7e-12  Score=64.48  Aligned_cols=43  Identities=12%  Similarity=-0.085  Sum_probs=40.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|+.|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6678999999999999999999999999999999999999873

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=9.5e-13  Score=65.45  Aligned_cols=42  Identities=10%  Similarity=-0.125  Sum_probs=31.8

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhc-CCCcccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQG-RDHINVN  132 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~-~~~~~~~  132 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|++ +++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            45667777778888888888888888888777777 7777775

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.2e-12  Score=65.11  Aligned_cols=43  Identities=12%  Similarity=-0.072  Sum_probs=40.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS   45 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999863

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.24  E-value=1.3e-12  Score=64.89  Aligned_cols=43  Identities=14%  Similarity=-0.043  Sum_probs=40.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|.+.+.|..|++.|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCC
Confidence            6678999999999999999999999999999999999999873

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.24  E-value=3.5e-13  Score=71.49  Aligned_cols=54  Identities=13%  Similarity=0.070  Sum_probs=46.8

Q ss_pred             HHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHH
Q psy3948          61 IGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILE  117 (143)
Q Consensus        61 ~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~  117 (143)
                      ..|++.|.+++||.|+.|++.|.....|.   +.|++++||.|..|++.|...+++.
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            45778899999999999999998888776   7899999999999999999876543

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=3.2e-12  Score=63.49  Aligned_cols=41  Identities=10%  Similarity=0.067  Sum_probs=31.2

Q ss_pred             HHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          93 KRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        93 ~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      +.|++++||.|..|++.|...+.|..|++.|+++++|.|.+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            45677777788778888887778888877777777777764

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.24  E-value=2.6e-12  Score=77.67  Aligned_cols=83  Identities=10%  Similarity=0.186  Sum_probs=65.7

Q ss_pred             CccccCCcchhhhc-----cchhhHHHhhhcccCCCCCCCCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCC
Q psy3948           5 HTILKCTFCNIIFN-----KLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCN   79 (143)
Q Consensus         5 ~~~~~C~~C~~~f~-----~~~~~~~~~~~c~~c~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~   79 (143)
                      .+.+.|+.|++.|.     ........+..         +.++++|.|++|++.|.....|..|++.|  .+||.|..|+
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~---------h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~  107 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLLA---------SKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCK  107 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHHH---------HHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTC
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHHH---------hCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCC
Confidence            34677888888886     22221111110         23457899999999999999999999998  7899999999


Q ss_pred             CCCCChHHHHHHHHHhcCC
Q psy3948          80 YSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        80 ~~f~~~~~l~~h~~~h~~e   98 (143)
                      +.|.....|..|++.|++.
T Consensus       108 k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          108 KEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CBCSSHHHHHHHHHHTTCC
T ss_pred             cccCCHHHHHHHHHHHCCc
Confidence            9999999999999999875

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.3e-12  Score=64.36  Aligned_cols=41  Identities=7%  Similarity=-0.041  Sum_probs=28.6

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            44566677777777777777777777777777777777666

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=8.3e-13  Score=64.37  Aligned_cols=40  Identities=15%  Similarity=-0.001  Sum_probs=26.4

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      +++|++++||.|..|++.|...+.|..|++.|+++++|.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            4456666666776677777766677777666666666654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=6e-12  Score=62.48  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=41.0

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|++.|.+++||.|..|++.|.....|..|++.|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367789999999999999999999999999999999999999864

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.5e-12  Score=64.68  Aligned_cols=43  Identities=12%  Similarity=0.019  Sum_probs=40.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999863

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.23  E-value=2.1e-12  Score=64.18  Aligned_cols=43  Identities=9%  Similarity=-0.056  Sum_probs=40.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS   45 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999863

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.5e-12  Score=64.62  Aligned_cols=43  Identities=16%  Similarity=0.098  Sum_probs=40.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999863

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.3e-12  Score=64.94  Aligned_cols=43  Identities=16%  Similarity=-0.006  Sum_probs=40.2

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6678999999999999999999999999999999999999873

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=6.2e-13  Score=64.79  Aligned_cols=40  Identities=13%  Similarity=0.018  Sum_probs=23.2

Q ss_pred             HHHhcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          92 QKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        92 ~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      +++|++++||.|..|++.|...+.|..|+++|+++++|.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3455555666666666666666666666656555555544

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.3e-12  Score=64.93  Aligned_cols=45  Identities=33%  Similarity=0.490  Sum_probs=42.3

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999987

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1e-11  Score=60.32  Aligned_cols=42  Identities=29%  Similarity=0.431  Sum_probs=38.5

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456789999999999999999999999999999999999885

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.3e-12  Score=64.94  Aligned_cols=40  Identities=15%  Similarity=-0.002  Sum_probs=22.2

Q ss_pred             HHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          93 KRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        93 ~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      ++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3455555555555555555555555555555555555553

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=7.7e-12  Score=61.20  Aligned_cols=39  Identities=10%  Similarity=-0.091  Sum_probs=29.6

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            466777777777777777777777777777777777765

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.2e-12  Score=64.31  Aligned_cols=43  Identities=16%  Similarity=0.024  Sum_probs=40.1

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHH-HHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLE-DIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~-~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|++ +|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            5678999999999999999999999999999 999999999874

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.21  E-value=8.2e-12  Score=60.69  Aligned_cols=42  Identities=26%  Similarity=0.499  Sum_probs=38.0

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            456788999999999999999999999999999999999885

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.20  E-value=3.2e-11  Score=66.38  Aligned_cols=62  Identities=29%  Similarity=0.538  Sum_probs=54.0

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhh-hcCCC-CCccCCCCCCCCCChHHHHHHHHH-hcCCCc
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMR-KHTGV-KPLKCSSCNYSCSTKSALSVHQKR-HTGLKA  100 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~-~~~~c~~c~~~f~~~~~l~~h~~~-h~~e~~  100 (143)
                      +.++++|.|++|++.|.....|..|++ .|.+. ++|.|..|++.|.....|..|++. |..+.|
T Consensus        10 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A           10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             cCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            567789999999999999999999986 67764 899999999999999999999986 455554

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=7.9e-12  Score=66.92  Aligned_cols=58  Identities=17%  Similarity=0.299  Sum_probs=52.6

Q ss_pred             CCcceeccCCCCccCCcchHHHhhhhcCCCCCccCC-CCCCCCCChHHHHHHHHHhcCCCc
Q psy3948          41 KSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCS-SCNYSCSTKSALSVHQKRHTGLKA  100 (143)
Q Consensus        41 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~-~c~~~f~~~~~l~~h~~~h~~e~~  100 (143)
                      .+++|.|..|++.|. ...|..|++. .+++||.|. .|++.|.....|..|+++|...++
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            457799999999999 9999999998 999999999 999999999999999999876654

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.20  E-value=1.2e-11  Score=67.31  Aligned_cols=58  Identities=33%  Similarity=0.607  Sum_probs=53.6

Q ss_pred             CCCCcceecc--CCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhc
Q psy3948          39 PDKSYNYACF--ICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHT   96 (143)
Q Consensus        39 ~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~   96 (143)
                      +.++++|.|+  .|++.|.....|..|++.|.+.++|.|..|++.|.....|..|+++|+
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            4667889997  599999999999999999999999999999999999999999998874

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.20  E-value=1.1e-11  Score=61.26  Aligned_cols=38  Identities=11%  Similarity=0.010  Sum_probs=18.3

Q ss_pred             hcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          95 HTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        95 h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |++++||.|..|++.|...+.|..|+++|+++.+|.|.
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~   42 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP   42 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCc
Confidence            34444444444444444444444444444444444443

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=9.7e-12  Score=61.70  Aligned_cols=43  Identities=33%  Similarity=0.533  Sum_probs=39.8

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999974

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.3e-12  Score=64.94  Aligned_cols=43  Identities=16%  Similarity=-0.002  Sum_probs=40.2

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccce
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNI  133 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~  133 (143)
                      |+++|++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999863

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.4e-11  Score=61.15  Aligned_cols=43  Identities=23%  Similarity=0.438  Sum_probs=39.8

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778999999999999999999999999999999999999964

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.4e-11  Score=61.09  Aligned_cols=44  Identities=34%  Similarity=0.501  Sum_probs=40.3

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36778999999999999999999999999999999999999964

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=9.8e-12  Score=61.68  Aligned_cols=39  Identities=10%  Similarity=-0.104  Sum_probs=20.0

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +|++++||.|..|++.|...+.|..|++.|+++++|.|.
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS   44 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344455555555555555555555555555555555443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.7e-13  Score=74.72  Aligned_cols=61  Identities=15%  Similarity=0.209  Sum_probs=50.6

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      +.++++|.|.+|++.|.....|..       .++|.|..|++.|.....|..|+++|++++||.|..|
T Consensus        13 h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           13 HLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            456678888888888888776654       6788899999889888889899888988899988876

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.4e-11  Score=61.13  Aligned_cols=44  Identities=32%  Similarity=0.449  Sum_probs=40.2

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            36778999999999999999999999999999999999999974

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=9.2e-12  Score=61.76  Aligned_cols=39  Identities=18%  Similarity=0.035  Sum_probs=21.2

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +|++++||.|..|++.|...+.|..|++.|+++++|.|.
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCC
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCC
Confidence            445555555555555555555555555555555555554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.5e-11  Score=60.98  Aligned_cols=44  Identities=32%  Similarity=0.406  Sum_probs=40.2

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36778999999999999999999999999999999999999964

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.18  E-value=1.2e-11  Score=61.34  Aligned_cols=44  Identities=36%  Similarity=0.543  Sum_probs=40.1

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778999999999999999999999999999999999999864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.8e-11  Score=60.73  Aligned_cols=44  Identities=30%  Similarity=0.499  Sum_probs=40.1

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999863

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.4e-11  Score=61.07  Aligned_cols=43  Identities=35%  Similarity=0.535  Sum_probs=39.6

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778899999999999999999999999999999999999964

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.9e-11  Score=60.55  Aligned_cols=44  Identities=39%  Similarity=0.535  Sum_probs=40.3

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|+++|.++++|.|..|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46778999999999999999999999999999999999999963

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.1e-11  Score=61.47  Aligned_cols=43  Identities=33%  Similarity=0.481  Sum_probs=39.3

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778899999999999999999999999999999999999864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.1e-11  Score=60.44  Aligned_cols=43  Identities=33%  Similarity=0.513  Sum_probs=39.8

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|..
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6678999999999999999999999999999999999999964

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.7e-11  Score=60.80  Aligned_cols=44  Identities=32%  Similarity=0.500  Sum_probs=40.0

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.4e-11  Score=61.02  Aligned_cols=44  Identities=32%  Similarity=0.563  Sum_probs=40.0

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            36778999999999999999999999999999999999999963

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.6e-11  Score=60.85  Aligned_cols=44  Identities=32%  Similarity=0.465  Sum_probs=40.0

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999863

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.17  E-value=1.2e-11  Score=63.49  Aligned_cols=52  Identities=12%  Similarity=0.110  Sum_probs=47.2

Q ss_pred             CCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCcee
Q psy3948          51 TYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK  102 (143)
Q Consensus        51 ~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~  102 (143)
                      ++.|.....|..|++.|.+++||.|..|++.|.....|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4567777788899999999999999999999999999999999999999874

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.6e-11  Score=60.25  Aligned_cols=43  Identities=30%  Similarity=0.532  Sum_probs=39.5

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            3677899999999999999999999999999999999999984

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=6.4e-12  Score=60.79  Aligned_cols=38  Identities=11%  Similarity=-0.014  Sum_probs=27.6

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      +|++++||.|..|++.|...+.|..|++.|+++++|.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            46677777777777777777777777777777777665

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.5e-11  Score=61.00  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=39.3

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            5678899999999999999999999999999999999999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.4e-11  Score=61.01  Aligned_cols=44  Identities=32%  Similarity=0.464  Sum_probs=40.2

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36778999999999999999999999999999999999999964

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.16  E-value=1.3e-11  Score=61.80  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=26.8

Q ss_pred             cCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccc
Q psy3948          67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVII  108 (143)
Q Consensus        67 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~  108 (143)
                      +.++++|.|..|++.|.....|..|+++|++++||.|..|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            445556666666666666666666666666666666666653

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.7e-11  Score=60.75  Aligned_cols=44  Identities=32%  Similarity=0.462  Sum_probs=39.7

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|++.|.++++|.|..|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999863

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.5e-11  Score=60.89  Aligned_cols=44  Identities=34%  Similarity=0.469  Sum_probs=39.6

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            36778899999999999999999999999999999999999864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.6e-11  Score=60.87  Aligned_cols=44  Identities=36%  Similarity=0.581  Sum_probs=40.0

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999873

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.5e-11  Score=60.98  Aligned_cols=44  Identities=41%  Similarity=0.602  Sum_probs=39.6

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2e-11  Score=60.52  Aligned_cols=44  Identities=34%  Similarity=0.497  Sum_probs=40.0

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.9e-11  Score=59.93  Aligned_cols=43  Identities=37%  Similarity=0.587  Sum_probs=39.3

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            3677889999999999999999999999999999999999884

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1e-11  Score=61.60  Aligned_cols=43  Identities=30%  Similarity=0.336  Sum_probs=40.6

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      ++.|.++++|.|..|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4678999999999999999999999999999999999999987

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.3e-11  Score=60.27  Aligned_cols=43  Identities=30%  Similarity=0.509  Sum_probs=38.7

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|..
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5677889999999999999999999999999999999999863

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=6.7e-12  Score=62.26  Aligned_cols=43  Identities=40%  Similarity=0.522  Sum_probs=40.7

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      ++.|.+++||.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999987

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=5e-12  Score=69.52  Aligned_cols=66  Identities=17%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             chHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          58 GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        58 ~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      ..|..|++.+.+.+|+.|..|+..| ....|..|. .+.+++||.|+.|++.|. +.+|..|++++.+.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEE-CHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             hHHHhhCcccCCCcccCCcccChHh-hHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            4567788889999999999999999 589999999 899999999999999877 69999999987765

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=3.6e-11  Score=59.02  Aligned_cols=42  Identities=19%  Similarity=0.241  Sum_probs=38.7

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            567788999999999999999999999999999999999984

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.4e-11  Score=60.22  Aligned_cols=43  Identities=23%  Similarity=0.424  Sum_probs=40.0

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3677899999999999999999999999999999999999996

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=6.6e-12  Score=62.03  Aligned_cols=40  Identities=15%  Similarity=-0.009  Sum_probs=30.2

Q ss_pred             HHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          93 KRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        93 ~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      ++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            4567777778877888888777788887777777777764

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.1e-11  Score=60.42  Aligned_cols=44  Identities=32%  Similarity=0.528  Sum_probs=39.5

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999863

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.14  E-value=2.6e-11  Score=58.81  Aligned_cols=41  Identities=22%  Similarity=0.403  Sum_probs=37.5

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceec
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC  103 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C  103 (143)
                      |++.|.+++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            56778899999999999999999999999999999999987

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.8e-11  Score=59.45  Aligned_cols=41  Identities=32%  Similarity=0.522  Sum_probs=37.6

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceec
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC  103 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C  103 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            56778999999999999999999999999999999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.14  E-value=2.9e-11  Score=59.64  Aligned_cols=43  Identities=23%  Similarity=0.427  Sum_probs=40.7

Q ss_pred             hhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccccc
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVI  107 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~  107 (143)
                      .+|++++||.|..|++.|.....|..|+++|+++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4588899999999999999999999999999999999999996

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.7e-11  Score=59.54  Aligned_cols=41  Identities=27%  Similarity=0.395  Sum_probs=37.9

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceec
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC  103 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C  103 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            56778999999999999999999999999999999999987

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.5e-11  Score=59.59  Aligned_cols=43  Identities=21%  Similarity=0.437  Sum_probs=38.7

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            3667889999999999999999999999999999999999884

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.5e-11  Score=59.54  Aligned_cols=43  Identities=21%  Similarity=0.304  Sum_probs=38.6

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            3677889999999999999999999999999999999999884

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.3e-11  Score=59.09  Aligned_cols=41  Identities=24%  Similarity=0.376  Sum_probs=37.3

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceec
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC  103 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C  103 (143)
                      |+++|.+++||.|..|++.|.....|..|++.|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            56778899999999999999999999999999999999877

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.6e-11  Score=60.20  Aligned_cols=43  Identities=30%  Similarity=0.495  Sum_probs=39.1

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3677899999999999999999999999999999999999884

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-11  Score=60.65  Aligned_cols=44  Identities=23%  Similarity=0.324  Sum_probs=39.7

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|++.|.+++||.|..|++.|.....|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999863

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.8e-11  Score=59.90  Aligned_cols=44  Identities=34%  Similarity=0.537  Sum_probs=39.7

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      .|++.|.+.+||.|..|++.|.....|..|++.|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778899999999999999999999999999999999999863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.1e-11  Score=59.84  Aligned_cols=42  Identities=24%  Similarity=0.359  Sum_probs=38.0

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcC-CCceecc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG-LKAHKCA  104 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~-e~~~~C~  104 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++ ++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            56778899999999999999999999999999999 9999886

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=9.1e-11  Score=58.09  Aligned_cols=41  Identities=24%  Similarity=0.327  Sum_probs=37.7

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      +++|.+++||.|..|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            45688899999999999999999999999999999999986

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.5e-11  Score=59.69  Aligned_cols=39  Identities=15%  Similarity=0.006  Sum_probs=19.4

Q ss_pred             HhcCCCceecc--cccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          94 RHTGLKAHKCA--NVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        94 ~h~~e~~~~C~--~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      +|++++||.|.  .|++.|...+.|..|+++|+++++|.|.
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   46 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS   46 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34445555554  4555555555555555555555555443

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.8e-11  Score=59.93  Aligned_cols=43  Identities=23%  Similarity=0.372  Sum_probs=39.5

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      .|+++|.+++||.|..|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3677899999999999999999999999999999999999986

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=1.1e-10  Score=56.94  Aligned_cols=41  Identities=17%  Similarity=0.325  Sum_probs=36.7

Q ss_pred             hhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceeccc
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN  105 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~  105 (143)
                      +.|.+++||.|..|++.|.....|..|+++|++++||.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            45788899999999999999999999999999999999863

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.08  E-value=7.5e-11  Score=56.29  Aligned_cols=37  Identities=5%  Similarity=-0.217  Sum_probs=31.2

Q ss_pred             hcCCCceecccccccccchHHHHHHHHHHhcCCCccc
Q psy3948          95 HTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINV  131 (143)
Q Consensus        95 h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~  131 (143)
                      |++++||.|..|++.|...+.|..|+++|+++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            5678889999999999999999999988888888765

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=8e-11  Score=57.74  Aligned_cols=42  Identities=29%  Similarity=0.521  Sum_probs=38.3

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            677889999999999999999999999999999999999763

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=6e-11  Score=55.88  Aligned_cols=36  Identities=3%  Similarity=-0.051  Sum_probs=31.2

Q ss_pred             HHhcCCCceecccccccccchHHHHHHHHHHhcCCC
Q psy3948          93 KRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus        93 ~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      ++|++++||.|..|++.|...+.|..|++.|+++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            467889999999999999999999999999987754

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.5e-11  Score=59.53  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=37.5

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      |+++|.+++||.|..|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            567788899999999999999999999999999999999874

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.04  E-value=1.4e-10  Score=53.75  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=29.7

Q ss_pred             hcCCCceecccccccccchHHHHHHHHHHhcCCC
Q psy3948          95 HTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus        95 h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      |++++||.|..|++.|...+.|..|++.|+++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            6788999999999999999999999999887653

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.2e-10  Score=56.11  Aligned_cols=39  Identities=26%  Similarity=0.515  Sum_probs=33.5

Q ss_pred             hhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceec
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC  103 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C  103 (143)
                      +.|.+++||.|..|++.|.....|..|+++|++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            457788889999999999999999999888988888876

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=6.2e-11  Score=58.40  Aligned_cols=41  Identities=37%  Similarity=0.587  Sum_probs=35.6

Q ss_pred             hhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        64 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      .+.|.+++||.|..|++.|.....|..|+++|++++||.|+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            45678888999999999999999999999999999999886

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4.6e-11  Score=59.66  Aligned_cols=44  Identities=30%  Similarity=0.556  Sum_probs=40.9

Q ss_pred             hhhhcCCCCCccCC--CCCCCCCChHHHHHHHHHhcCCCceecccc
Q psy3948          63 HMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKCANV  106 (143)
Q Consensus        63 h~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C  106 (143)
                      |.+.|.+++||.|.  .|++.|.....|..|+++|++++||.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45678999999998  899999999999999999999999999987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.02  E-value=4.1e-10  Score=61.03  Aligned_cols=57  Identities=30%  Similarity=0.529  Sum_probs=51.4

Q ss_pred             CCCCcceeccC--CCCccCCcchHHHhhhhcCCCCCccCCC--CCCCCCChHHHHHHHHHh
Q psy3948          39 PDKSYNYACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        39 ~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~h   95 (143)
                      ....++|.|..  |++.|.....|..|++.|.+++||.|..  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            45567899988  9999999999999999999999999965  999999999999998764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=2.1e-10  Score=54.48  Aligned_cols=34  Identities=15%  Similarity=-0.044  Sum_probs=29.5

Q ss_pred             HhcCCCceeccc--ccccccchHHHHHHHHHHhcCC
Q psy3948          94 RHTGLKAHKCAN--VIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        94 ~h~~e~~~~C~~--C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      .+++++||.|..  |++.|...+.|..|+++|++++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            357899999986  9999999999999999998753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.02  E-value=5.8e-11  Score=55.94  Aligned_cols=35  Identities=14%  Similarity=0.109  Sum_probs=28.3

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhc
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      |.++|++++||.|+.|++.|...+.|..|++.|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            45677888888888888888888888888887765

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.00  E-value=5.5e-10  Score=57.19  Aligned_cols=46  Identities=24%  Similarity=0.411  Sum_probs=42.1

Q ss_pred             CCCCcceeccCCCCccCCcchHHHhhh-hcCCCCCccCCCCCCCCCC
Q psy3948          39 PDKSYNYACFICTYHTRKHGDMIGHMR-KHTGVKPLKCSSCNYSCST   84 (143)
Q Consensus        39 ~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~c~~c~~~f~~   84 (143)
                      +..+++|.|.+|++.|.....|..|++ +|.+++||.|..|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            466788999999999999999999987 8999999999999999865

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.00  E-value=1.8e-10  Score=53.48  Aligned_cols=35  Identities=9%  Similarity=-0.038  Sum_probs=29.1

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcCCC
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      +|++++||.|..|++.|...+.|..|++.|+++.+
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            36788899999999999999999999888887653

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.99  E-value=1.4e-10  Score=57.92  Aligned_cols=42  Identities=12%  Similarity=-0.111  Sum_probs=38.2

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcCCCcccceee
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIAL  135 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~~~  135 (143)
                      .+.++++|.|..|++.|...+.|..|+++|+++++|.|....
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            467789999999999999999999999999999999998543

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.97  E-value=3.6e-10  Score=60.19  Aligned_cols=36  Identities=6%  Similarity=0.014  Sum_probs=18.9

Q ss_pred             cCCCceeccc--ccccccchHHHHHHH-HHHhcCCCccc
Q psy3948          96 TGLKAHKCAN--VIIIAIMYHILEIML-EDIQGRDHINV  131 (143)
Q Consensus        96 ~~e~~~~C~~--C~~~f~~~s~l~~h~-~~~~~~~~~~~  131 (143)
                      +++|||.|..  |++.|+..++|.+|+ ++|++++||-|
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            3455555543  555555555555554 34555555443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=6.5e-10  Score=52.53  Aligned_cols=35  Identities=9%  Similarity=-0.095  Sum_probs=31.2

Q ss_pred             hcCCCceecc--cccccccchHHHHHHHHHHhcCCCc
Q psy3948          95 HTGLKAHKCA--NVIIIAIMYHILEIMLEDIQGRDHI  129 (143)
Q Consensus        95 h~~e~~~~C~--~C~~~f~~~s~l~~h~~~~~~~~~~  129 (143)
                      |++++||.|.  .|++.|...+.|..|+++|+++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5688999999  5999999999999999999988876

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=7.1e-10  Score=52.07  Aligned_cols=34  Identities=15%  Similarity=0.077  Sum_probs=29.9

Q ss_pred             HHhcCCCceecccccccccch-HHHHHHHHHHhcC
Q psy3948          93 KRHTGLKAHKCANVIIIAIMY-HILEIMLEDIQGR  126 (143)
Q Consensus        93 ~~h~~e~~~~C~~C~~~f~~~-s~l~~h~~~~~~~  126 (143)
                      ++|++++||.|..|++.|... +.|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            357889999999999999999 9999999998865

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=9.7e-10  Score=51.19  Aligned_cols=33  Identities=18%  Similarity=0.235  Sum_probs=29.0

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +|++++||.|..|++.|...+.|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            477889999999999999999999999988765

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.91  E-value=1e-09  Score=50.31  Aligned_cols=32  Identities=6%  Similarity=-0.123  Sum_probs=24.1

Q ss_pred             CceecccccccccchHHHHHHHHHHhcCCCcc
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGRDHIN  130 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~  130 (143)
                      +||.|..|++.|...+.|..|+++|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            46777777777777777777777777777764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=4.3e-10  Score=52.96  Aligned_cols=34  Identities=9%  Similarity=0.048  Sum_probs=29.5

Q ss_pred             HHhcCCCceecccccccccchHHHHHH-HHHHhcC
Q psy3948          93 KRHTGLKAHKCANVIIIAIMYHILEIM-LEDIQGR  126 (143)
Q Consensus        93 ~~h~~e~~~~C~~C~~~f~~~s~l~~h-~~~~~~~  126 (143)
                      ++|++++||.|..|++.|...+.|..| ++.|++.
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            467889999999999999999999999 7777653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.1e-09  Score=51.12  Aligned_cols=33  Identities=12%  Similarity=0.037  Sum_probs=28.7

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +|++++||.|..|++.|...+.|..|++.|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            577889999999999999999999999888764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.87  E-value=7.3e-10  Score=51.87  Aligned_cols=26  Identities=15%  Similarity=-0.081  Sum_probs=23.7

Q ss_pred             hcCCCceecccccccccchHHHHHHH
Q psy3948          95 HTGLKAHKCANVIIIAIMYHILEIML  120 (143)
Q Consensus        95 h~~e~~~~C~~C~~~f~~~s~l~~h~  120 (143)
                      +.+|+||.|..|++.|++.++|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            46899999999999999999999998

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.8e-09  Score=50.21  Aligned_cols=33  Identities=12%  Similarity=-0.146  Sum_probs=27.1

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      .|+++++|.|..|++.|...+.|..|++.|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            466788888888888888888888888888765

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=8.9e-10  Score=51.39  Aligned_cols=33  Identities=3%  Similarity=-0.299  Sum_probs=27.8

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      .|++++||.|..|++.|...+.|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            467888999999999999999999998887754

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=2.9e-09  Score=49.56  Aligned_cols=33  Identities=15%  Similarity=0.090  Sum_probs=28.5

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      .|.+++||.|..|++.|...+.|..|+++|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            466788999999999999999999999988765

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.82  E-value=1.3e-09  Score=54.46  Aligned_cols=35  Identities=9%  Similarity=-0.152  Sum_probs=27.7

Q ss_pred             HhcCCCceecccccccccchHHHHHHHH-HHhcCCC
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLE-DIQGRDH  128 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~-~~~~~~~  128 (143)
                      +|++++||.|..|++.|...+.|..|++ +|.++..
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            4778999999999999999999999998 7776644

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.82  E-value=5.1e-09  Score=55.79  Aligned_cols=40  Identities=18%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             hcCCCCCccCCC--CCCCCCChHHHHHHH-HHhcCCCceeccc
Q psy3948          66 KHTGVKPLKCSS--CNYSCSTKSALSVHQ-KRHTGLKAHKCAN  105 (143)
Q Consensus        66 ~~~~~~~~~c~~--c~~~f~~~~~l~~h~-~~h~~e~~~~C~~  105 (143)
                      .+.+++||.|..  |+++|.....|..|+ ++|++++||.|.+
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            367889999965  999999999999997 6899999998865

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.82  E-value=2.4e-09  Score=50.84  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=27.3

Q ss_pred             cCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceec
Q psy3948          67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC  103 (143)
Q Consensus        67 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C  103 (143)
                      |.+++||.|..|++.|.....|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            3556777788888888888888888777877777754

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.76  E-value=7.5e-09  Score=48.52  Aligned_cols=32  Identities=19%  Similarity=0.034  Sum_probs=28.1

Q ss_pred             hcCCCceecc--cccccccchHHHHHHHHHHhcC
Q psy3948          95 HTGLKAHKCA--NVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        95 h~~e~~~~C~--~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      |++++||.|.  .|++.|...+.|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            6788999998  4999999999999999998875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=7.8e-10  Score=62.49  Aligned_cols=59  Identities=12%  Similarity=0.116  Sum_probs=41.8

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHHhc
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      +.++|.+++||.|..|++.|.....|..|+++|++++||.|..|.    ....|..|.+.+.+
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            455677788888888888888888888888888888888887655    34445555554443

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.75  E-value=3.5e-10  Score=59.66  Aligned_cols=43  Identities=7%  Similarity=-0.053  Sum_probs=37.7

Q ss_pred             HHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccceee
Q psy3948          90 VHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVNIAL  135 (143)
Q Consensus        90 ~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~~~~  135 (143)
                      .|+++|++++||.|+.|++.|...+.|.   +.|.++++|.|....
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~   46 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCH   46 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSC
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCC
Confidence            4677899999999999999999999887   789999999998443

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=5.1e-09  Score=48.98  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=31.0

Q ss_pred             hhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCc
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKA  100 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~  100 (143)
                      ++|.+++||.|..|++.|.....|..|+++|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            457888899999999999999999999999988875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.72  E-value=1.7e-08  Score=46.08  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=27.2

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhcCCCcee
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK  102 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~  102 (143)
                      +||.|..|++.|.....|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            47888889988988899999988898888874

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.71  E-value=1.5e-08  Score=47.33  Aligned_cols=36  Identities=39%  Similarity=0.756  Sum_probs=32.2

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCC
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      |++.|.+++||.|+.|++.|.....|..|++.|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            567889999999999999999999999999998764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.68  E-value=1.8e-08  Score=46.36  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=27.6

Q ss_pred             cCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCc
Q psy3948          67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKA  100 (143)
Q Consensus        67 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~  100 (143)
                      |.+++||.|..|++.|.....|..|++.|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5677888888888888888888888888887764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=1.8e-09  Score=60.99  Aligned_cols=40  Identities=8%  Similarity=-0.132  Sum_probs=30.3

Q ss_pred             HHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc
Q psy3948          93 KRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus        93 ~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      ++|++++||.|..|++.|...+.|..|+++|+++++|.|.
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~   57 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAK   57 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccc
Confidence            4567777777777777777777777777777777777776

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.66  E-value=2.1e-08  Score=46.18  Aligned_cols=34  Identities=29%  Similarity=0.498  Sum_probs=27.2

Q ss_pred             cCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCc
Q psy3948          67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKA  100 (143)
Q Consensus        67 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~  100 (143)
                      |.+++||.|..|++.|.....|..|++.|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5677788888888888888888888888887764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.66  E-value=4e-09  Score=52.30  Aligned_cols=35  Identities=6%  Similarity=-0.068  Sum_probs=29.3

Q ss_pred             HHHhcCCCceecc--cccccccchHHHHHHHHHHhcC
Q psy3948          92 QKRHTGLKAHKCA--NVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        92 ~~~h~~e~~~~C~--~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      ...|++++||.|.  .|++.|...+.|..|+++|+++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            3468888999995  6999999999999999888865

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.65  E-value=1.5e-08  Score=44.76  Aligned_cols=29  Identities=14%  Similarity=-0.095  Sum_probs=24.5

Q ss_pred             CCceecccccccccchHHHHHHHHHHhcC
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      ++||.|..|++.|...+.|..|++.|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            46889999999999999999998888764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.64  E-value=1.8e-08  Score=43.56  Aligned_cols=27  Identities=11%  Similarity=0.048  Sum_probs=23.7

Q ss_pred             CCceecccccccccchHHHHHHHHHHh
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      ++||.|..|++.|...+.|..|++.|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            578999999999999999999988763

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.63  E-value=2.5e-08  Score=44.00  Aligned_cols=29  Identities=10%  Similarity=0.157  Sum_probs=24.3

Q ss_pred             CceecccccccccchHHHHHHHHHHhcCC
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      +||.|..|++.|...+.|..|++.|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            47888889999988889999988888765

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.63  E-value=2.3e-08  Score=53.25  Aligned_cols=33  Identities=6%  Similarity=-0.191  Sum_probs=24.4

Q ss_pred             hcCCCceecccccccccchHHHHHHHHHHhcCC
Q psy3948          95 HTGLKAHKCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        95 h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      +.+++||.|..|++.|...+.|..|+++|++..
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            456777777777777777777777777777653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.61  E-value=3.3e-08  Score=43.31  Aligned_cols=28  Identities=7%  Similarity=0.005  Sum_probs=22.5

Q ss_pred             CceecccccccccchHHHHHHHHHHhcC
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +||.|..|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4688888888888888888888887754

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.60  E-value=2.4e-08  Score=43.83  Aligned_cols=28  Identities=7%  Similarity=0.019  Sum_probs=23.4

Q ss_pred             CceecccccccccchHHHHHHHHHHhcC
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +||.|..|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4788888888888888888888888764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.59  E-value=4.5e-08  Score=42.80  Aligned_cols=28  Identities=18%  Similarity=0.018  Sum_probs=24.1

Q ss_pred             CceecccccccccchHHHHHHHHHHhcC
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +||.|..|++.|...+.|..|+++|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            4788999999999999999999888765

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.59  E-value=3.4e-08  Score=46.35  Aligned_cols=35  Identities=23%  Similarity=0.490  Sum_probs=29.0

Q ss_pred             cCCCCCccCC--CCCCCCCChHHHHHHHHHhcCCCce
Q psy3948          67 HTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAH  101 (143)
Q Consensus        67 ~~~~~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~~~  101 (143)
                      |++++||.|.  .|++.|.....|..|+++|++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4567888888  5888888888888888888888876

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.58  E-value=1.7e-08  Score=43.99  Aligned_cols=27  Identities=11%  Similarity=0.071  Sum_probs=23.2

Q ss_pred             CCceecccccccccchHHHHHHHHHHh
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      ++||.|..|++.|...+.|..|++.|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999987765

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.58  E-value=1.4e-08  Score=44.03  Aligned_cols=26  Identities=4%  Similarity=-0.027  Sum_probs=23.1

Q ss_pred             CCceecccccccccchHHHHHHHHHH
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~  123 (143)
                      ++||.|..|++.|...+.|..|++.|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            57899999999999999999998765

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.57  E-value=3.9e-08  Score=42.97  Aligned_cols=28  Identities=21%  Similarity=0.081  Sum_probs=22.9

Q ss_pred             CceecccccccccchHHHHHHHHHHhcC
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +||.|..|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4788888888888888888888888765

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.55  E-value=1.2e-09  Score=49.63  Aligned_cols=31  Identities=10%  Similarity=-0.058  Sum_probs=24.1

Q ss_pred             CceecccccccccchHHHHHHHHHHhcCCCc
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGRDHI  129 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~  129 (143)
                      +||.|..|++.|...+.|..|+++|+++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4678888888888888888888777777665

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.55  E-value=3.7e-08  Score=44.34  Aligned_cols=29  Identities=14%  Similarity=0.017  Sum_probs=22.4

Q ss_pred             CCceecc--cccccccchHHHHHHHHHHhcC
Q psy3948          98 LKAHKCA--NVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        98 e~~~~C~--~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      ++||.|.  .|++.|...+.|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4678887  7888888888888888777754

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=1.4e-07  Score=43.48  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=28.7

Q ss_pred             hcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          66 KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        66 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      .|.++++|.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            4677788999999999999999999998888764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=1e-07  Score=44.01  Aligned_cols=34  Identities=41%  Similarity=0.812  Sum_probs=28.0

Q ss_pred             hcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          66 KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        66 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +|.+++||.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4677788888888888888888888888888764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=6.9e-08  Score=44.96  Aligned_cols=35  Identities=26%  Similarity=0.508  Sum_probs=29.0

Q ss_pred             hhcCCCCCccCCCCCCCCCCh-HHHHHHHHHhcCCC
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTK-SALSVHQKRHTGLK   99 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~-~~l~~h~~~h~~e~   99 (143)
                      ++|.+++||.|..|++.|... ..|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            357778889999999999888 89999988888764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=9.1e-08  Score=44.25  Aligned_cols=34  Identities=41%  Similarity=0.722  Sum_probs=27.4

Q ss_pred             hcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          66 KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        66 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      .|.+++||.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            4677788888888888888888888888887764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=1.1e-07  Score=44.83  Aligned_cols=32  Identities=41%  Similarity=0.634  Sum_probs=25.5

Q ss_pred             cCCCCCccCCC--CCCCCCChHHHHHHHHHhcCC
Q psy3948          67 HTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        67 ~~~~~~~~c~~--c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      +.+++||.|..  |++.|.....|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56778888875  888888888888888888775

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=1.4e-08  Score=44.98  Aligned_cols=29  Identities=14%  Similarity=0.024  Sum_probs=24.3

Q ss_pred             CCceecccccccccchHHHHHHHHHHhcC
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      ++||.|..|++.|...+.|..|++.|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            46888999999999999999998888754

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.88  E-value=1.6e-08  Score=44.53  Aligned_cols=28  Identities=14%  Similarity=0.058  Sum_probs=23.5

Q ss_pred             CceecccccccccchHHHHHHHHHHhcC
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +||.|..|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            4788999999999999999998888764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=8.6e-08  Score=44.34  Aligned_cols=34  Identities=12%  Similarity=0.089  Sum_probs=26.1

Q ss_pred             hcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          66 KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        66 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      .|.+++||.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3566778888888888888888888888777653

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.47  E-value=5.4e-08  Score=43.47  Aligned_cols=28  Identities=11%  Similarity=-0.004  Sum_probs=20.5

Q ss_pred             Cceecc--cccccccchHHHHHHHHHHhcC
Q psy3948          99 KAHKCA--NVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        99 ~~~~C~--~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +||.|.  .|++.|...+.|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            467776  7777777777777777777654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=2.3e-07  Score=42.83  Aligned_cols=33  Identities=30%  Similarity=0.419  Sum_probs=25.9

Q ss_pred             cCCCCCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        67 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +.+++||.|..|++.|.....|..|+++|++++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            566778888888888888888888888887764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1e-07  Score=44.51  Aligned_cols=34  Identities=29%  Similarity=0.554  Sum_probs=27.5

Q ss_pred             hhcCCCCCccCCCCCCCCCChHHHHHH-HHHhcCC
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTKSALSVH-QKRHTGL   98 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~~~l~~h-~~~h~~e   98 (143)
                      +.|.+++||.|..|++.|.....|..| ++.|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            357778888888888888888888888 7788764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.79  E-value=2.9e-08  Score=42.50  Aligned_cols=26  Identities=12%  Similarity=0.007  Sum_probs=22.4

Q ss_pred             CceecccccccccchHHHHHHHHHHh
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      +||.|..|++.|...+.|..|++.|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47899999999999999999988763

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.39  E-value=6.9e-08  Score=41.53  Aligned_cols=26  Identities=12%  Similarity=-0.070  Sum_probs=18.3

Q ss_pred             ceecccccccccchHHHHHHHHHHhc
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      ||.|..|++.|...+.|..|++.|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46777777777777777777766654

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=2.7e-08  Score=54.38  Aligned_cols=51  Identities=14%  Similarity=0.042  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCCCceecccccccccchHHHHHHHHHHhcCCCcccc-eeeeeeee
Q psy3948          88 LSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHINVN-IALTLQFS  140 (143)
Q Consensus        88 l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~~~~-~~~~~~~~  140 (143)
                      |..|++++.+++|+.|..|++.|. .++|..|. .+.++.++.|. +...+..+
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~~   56 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLVK   56 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEETT
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcHH
Confidence            455778899999999999999995 99999999 89999999998 44444333

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.36  E-value=2.3e-07  Score=46.02  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=23.6

Q ss_pred             cCCCCCccCCCCCCCCCChHHHHHHHH-HhcCCC
Q psy3948          67 HTGVKPLKCSSCNYSCSTKSALSVHQK-RHTGLK   99 (143)
Q Consensus        67 ~~~~~~~~c~~c~~~f~~~~~l~~h~~-~h~~e~   99 (143)
                      |++++||.|..|++.|.....|..|++ +|+++.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            566777777777777777777777777 777654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.34  E-value=1e-07  Score=42.03  Aligned_cols=28  Identities=18%  Similarity=0.015  Sum_probs=19.5

Q ss_pred             CceecccccccccchHHHHHH-HHHHhcC
Q psy3948          99 KAHKCANVIIIAIMYHILEIM-LEDIQGR  126 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h-~~~~~~~  126 (143)
                      +||.|..|++.|...+.|..| ++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            367777777777777777777 4565543

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.33  E-value=4.5e-07  Score=42.17  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=27.2

Q ss_pred             cCCCCCccCC--CCCCCCCChHHHHHHHHHhcCCC
Q psy3948          67 HTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        67 ~~~~~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      |.+++||.|.  .|++.|.....|..|+++|++++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            5677888888  48888888888999988888764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.32  E-value=1.4e-07  Score=46.53  Aligned_cols=39  Identities=18%  Similarity=0.325  Sum_probs=32.8

Q ss_pred             HHhhhhcCCCCCccCC--CCCCCCCChHHHHHHHHHhcCCC
Q psy3948          61 IGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        61 ~~h~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      ..+...|.+++||.|.  .|++.|.....|..|+++|++++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3445668899999995  79999999999999999998874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.31  E-value=2e-07  Score=43.40  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=18.0

Q ss_pred             cCCCCCccCCCCCCCCCChHHHHHHH
Q psy3948          67 HTGVKPLKCSSCNYSCSTKSALSVHQ   92 (143)
Q Consensus        67 ~~~~~~~~c~~c~~~f~~~~~l~~h~   92 (143)
                      +.+++||.|..|+++|.+.+.|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            34566777777777777777777776

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.27  E-value=1.2e-06  Score=38.04  Aligned_cols=29  Identities=24%  Similarity=0.513  Sum_probs=22.4

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            36778888888888888888888887653

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.27  E-value=2e-08  Score=45.43  Aligned_cols=30  Identities=27%  Similarity=0.318  Sum_probs=14.7

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCCCce
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGLKAH  101 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~  101 (143)
                      ||.|..|++.|.....|..|+++|++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            344555555555445555555555544443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.26  E-value=4e-07  Score=39.61  Aligned_cols=26  Identities=12%  Similarity=-0.208  Sum_probs=22.8

Q ss_pred             Cceecc--cccccccchHHHHHHHHHHh
Q psy3948          99 KAHKCA--NVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        99 ~~~~C~--~C~~~f~~~s~l~~h~~~~~  124 (143)
                      +||.|.  .|++.|...+.|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            478999  99999999999999988775

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.23  E-value=1.4e-06  Score=38.83  Aligned_cols=29  Identities=24%  Similarity=0.543  Sum_probs=21.2

Q ss_pred             CCccCC--CCCCCCCChHHHHHHHHHhcCCC
Q psy3948          71 KPLKCS--SCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        71 ~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +||.|.  .|++.|.....|..|+++|++++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            567777  67777777777777777777653

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.22  E-value=8.3e-07  Score=38.57  Aligned_cols=27  Identities=19%  Similarity=0.373  Sum_probs=17.6

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCC
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      ||.|..|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            566666666666666666666666654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.22  E-value=1e-06  Score=38.49  Aligned_cols=28  Identities=29%  Similarity=0.464  Sum_probs=18.1

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhcCC
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            4566666666666666666666666654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.21  E-value=1e-06  Score=38.17  Aligned_cols=29  Identities=38%  Similarity=0.689  Sum_probs=21.9

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            36777888888888888888887777664

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.21  E-value=1.4e-06  Score=37.69  Aligned_cols=29  Identities=28%  Similarity=0.416  Sum_probs=22.0

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +||.|..|++.|.....|..|++.|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            36778888888888888888887777653

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.21  E-value=1.4e-06  Score=38.61  Aligned_cols=29  Identities=31%  Similarity=0.694  Sum_probs=21.3

Q ss_pred             CCccCC--CCCCCCCChHHHHHHHHHhcCCC
Q psy3948          71 KPLKCS--SCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        71 ~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +||.|.  .|++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            367776  77778888888888877777653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.20  E-value=1.8e-06  Score=37.62  Aligned_cols=28  Identities=21%  Similarity=0.511  Sum_probs=21.1

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      ||.|..|++.|.....|..|+++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            5677777777777777777777777665

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.18  E-value=2.3e-06  Score=45.41  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=24.9

Q ss_pred             cCCCCCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        67 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +.+++||.|..|++.|.....|..|+++|+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            556677778888888887788888877777654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.07  E-value=3.3e-06  Score=35.91  Aligned_cols=26  Identities=46%  Similarity=0.678  Sum_probs=16.7

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcC
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTG   97 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~   97 (143)
                      ||.|..|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            35666676667666667777666654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.33  E-value=5.3e-07  Score=39.32  Aligned_cols=27  Identities=33%  Similarity=0.673  Sum_probs=17.2

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCC
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      ||.|..|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            556666666666666666666666554

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.05  E-value=2.8e-06  Score=37.09  Aligned_cols=27  Identities=33%  Similarity=0.588  Sum_probs=17.8

Q ss_pred             CccCCCCCCCCCChHHHHHH-HHHhcCC
Q psy3948          72 PLKCSSCNYSCSTKSALSVH-QKRHTGL   98 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h-~~~h~~e   98 (143)
                      ||.|..|++.|.....|..| ++.|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            56666677666666667776 5666654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.27  E-value=7.2e-07  Score=39.08  Aligned_cols=28  Identities=36%  Similarity=0.608  Sum_probs=17.7

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhcCC
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      +||.|..|++.|.....|..|++.|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4566666666666666666666666554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.00  E-value=3.7e-06  Score=36.13  Aligned_cols=26  Identities=35%  Similarity=0.668  Sum_probs=14.4

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhc
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHT   96 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~   96 (143)
                      +||.|..|++.|.....|..|++.|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            34555555555555555555555543

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.99  E-value=4.7e-06  Score=35.50  Aligned_cols=25  Identities=36%  Similarity=0.665  Sum_probs=14.4

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHh
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h   95 (143)
                      +||.|..|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            3555556666666666666655544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.92  E-value=3.9e-05  Score=40.34  Aligned_cols=49  Identities=16%  Similarity=0.167  Sum_probs=39.8

Q ss_pred             CCCCCCCCChHHHHHHH-HHhcCCC------ceecc--cccccccchHHHHHHHHHHh
Q psy3948          76 SSCNYSCSTKSALSVHQ-KRHTGLK------AHKCA--NVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        76 ~~c~~~f~~~~~l~~h~-~~h~~e~------~~~C~--~C~~~f~~~s~l~~h~~~~~  124 (143)
                      ..|++.|.+...|..|. ..|.+.+      +|.|.  .|++.+.....|..|++..|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            35778888888888886 4676655      79996  79999999999999998764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.85  E-value=4.3e-06  Score=35.74  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=10.9

Q ss_pred             ceeccCCCCccCCcchHHHhhhh
Q psy3948          44 NYACFICTYHTRKHGDMIGHMRK   66 (143)
Q Consensus        44 ~~~c~~c~~~~~~~~~l~~h~~~   66 (143)
                      +|.|+.||+.|.....|..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTT
T ss_pred             CcCCCCCCcccCCHHHHHHHHHh
Confidence            34455555555444444444443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.88  E-value=5.2e-06  Score=35.01  Aligned_cols=24  Identities=29%  Similarity=0.606  Sum_probs=12.9

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHh
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h   95 (143)
                      ||.|..|++.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            455555555555555555555444

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.59  E-value=2.6e-05  Score=33.43  Aligned_cols=25  Identities=32%  Similarity=0.572  Sum_probs=13.4

Q ss_pred             CccCC--CCCCCCCChHHHHHHHHHhc
Q psy3948          72 PLKCS--SCNYSCSTKSALSVHQKRHT   96 (143)
Q Consensus        72 ~~~c~--~c~~~f~~~~~l~~h~~~h~   96 (143)
                      ||.|.  .|++.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            34555  55555555555555555543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.44  E-value=1.7e-05  Score=46.98  Aligned_cols=28  Identities=18%  Similarity=0.145  Sum_probs=24.6

Q ss_pred             HhcCCCceecccccccccchHHHHHHHH
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLE  121 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~  121 (143)
                      -++|++||.|..|++.|.+.+.|..|++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHh
Confidence            5778899999999999999999999954

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.91  E-value=0.00081  Score=32.45  Aligned_cols=30  Identities=7%  Similarity=-0.176  Sum_probs=22.8

Q ss_pred             CceecccccccccchHHHHHHHHHHhcCCC
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      -+|.|+.|+..|.....|+.|++-..++.+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~v   40 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEMV   40 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcchh
Confidence            457888888888888888888886666654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.011  Score=30.68  Aligned_cols=50  Identities=18%  Similarity=0.424  Sum_probs=39.6

Q ss_pred             eccCCCCccCCcchHHHhh-hhcCCCC------CccCC--CCCCCCCChHHHHHHHHHh
Q psy3948          46 ACFICTYHTRKHGDMIGHM-RKHTGVK------PLKCS--SCNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        46 ~c~~c~~~~~~~~~l~~h~-~~~~~~~------~~~c~--~c~~~f~~~~~l~~h~~~h   95 (143)
                      ....|++.|.+...|..|+ ..|.+.+      +|.|.  .|+..+.....|..|++..
T Consensus         5 ~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            5 KWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            3456899999999999997 4787765      68886  7988888888899998753

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.96  E-value=0.006  Score=38.13  Aligned_cols=97  Identities=14%  Similarity=0.185  Sum_probs=60.6

Q ss_pred             hcccCCCCCCCC------------CCcceecc--CCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHH
Q psy3948          29 HCKSCKKPKRPD------------KSYNYACF--ICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR   94 (143)
Q Consensus        29 ~c~~c~~~~~~~------------~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~   94 (143)
                      .|+.|+..+...            .+-...|+  .|+..+.. ..+..|. ..-...+..|+.|+..+ ....|..|...
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~~-~~l~~H~-~~C~~~~v~C~~C~~~~-~r~~l~~H~~~  131 (170)
T 3hcs_A           55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMEL-RHLEDHQ-AHCEFALMDCPQCQRPF-QKFHINIHILK  131 (170)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEEG-GGHHHHH-TTCTTSEEECTTTCCEE-EGGGHHHHHHH
T ss_pred             CCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceecH-hHHHHHH-hcCCceeeECCCCChHH-HHHHHHHHhhh
Confidence            688887766421            01234463  45555443 3455664 23344567788887665 56678888877


Q ss_pred             hcCCCceecccccccccchHHHHHHHHHHhcCCCc
Q psy3948          95 HTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDHI  129 (143)
Q Consensus        95 h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~  129 (143)
                      .-..++..|..|+..+. ...|..|..++.+..++
T Consensus       132 ~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          132 DCPRRQVSCDNCAASMA-FEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             TCTTCEEECTTTCCEEE-GGGHHHHHTTCCC----
T ss_pred             hCCCCCeECCCCCCccC-HHHHHhHHHhCcChhhh
Confidence            77778888999987765 56788888877776654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.82  E-value=0.01  Score=35.37  Aligned_cols=75  Identities=12%  Similarity=0.119  Sum_probs=46.5

Q ss_pred             cceeccCCCCccCCcchHHHhh--hhcCCC-CCccC------CCCCCCCCChHHHHHHHHHhcCCCceecccccccccch
Q psy3948          43 YNYACFICTYHTRKHGDMIGHM--RKHTGV-KPLKC------SSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMY  113 (143)
Q Consensus        43 ~~~~c~~c~~~~~~~~~l~~h~--~~~~~~-~~~~c------~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~  113 (143)
                      .++.|.+|+..|.+...+..|.  +.|... +.+.+      +.-+..+....    +.....+.+.|.|..|...|.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            4478999999999888888886  333211 11111      00111222111    11234456778999999999999


Q ss_pred             HHHHHHHH
Q psy3948         114 HILEIMLE  121 (143)
Q Consensus       114 s~l~~h~~  121 (143)
                      ..|..|..
T Consensus       107 ~~~~~H~~  114 (127)
T 1zu1_A          107 VVAESHYI  114 (127)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            99999965

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.57  E-value=0.0023  Score=37.95  Aligned_cols=30  Identities=17%  Similarity=0.282  Sum_probs=25.3

Q ss_pred             hhcCCCCCccCCCCCCCCCChHHHHHHHHH
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKR   94 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~   94 (143)
                      ..++|.+||.|..|++.|.+...|..|.++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            347788899999999999999999999863

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.38  E-value=0.02  Score=25.73  Aligned_cols=27  Identities=11%  Similarity=0.022  Sum_probs=23.0

Q ss_pred             ceecccccccccchHHHHHHHHHHhcC
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      .|.|+.|.+.|.+...|..|-...|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            489999999999999999998876644

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.23  E-value=0.16  Score=24.52  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=16.8

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHH
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKR   94 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~   94 (143)
                      .++.|+.|+..|.....|..|++.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            356777777777777777777763

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.68  E-value=0.25  Score=22.28  Aligned_cols=25  Identities=8%  Similarity=-0.113  Sum_probs=20.3

Q ss_pred             CceecccccccccchHHHHHHHHHH
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~  123 (143)
                      ..+.|..|+..|..-.++..|++.=
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             CcCeeccccceehhhHHHhhhheec
Confidence            4578999999999988999887643

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=91.46  E-value=0.15  Score=30.27  Aligned_cols=27  Identities=19%  Similarity=0.284  Sum_probs=22.9

Q ss_pred             cCCCCCccCCCCCCCCCChHHHHHHHH
Q psy3948          67 HTGVKPLKCSSCNYSCSTKSALSVHQK   93 (143)
Q Consensus        67 ~~~~~~~~c~~c~~~f~~~~~l~~h~~   93 (143)
                      +.+...+.|..|...|.+...+..|..
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            455677899999999999999999874

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=90.27  E-value=0.16  Score=27.96  Aligned_cols=28  Identities=11%  Similarity=-0.120  Sum_probs=20.5

Q ss_pred             CceecccccccccchHHHHHHHHHHhcCCCc
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGRDHI  129 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~~~~  129 (143)
                      ....|-+||+.|..   |.+|+..+++-.+.
T Consensus        20 d~iiClecGK~fK~---LkRHL~~~hgltpe   47 (87)
T 2jsp_A           20 DHIVCLECGGSFKS---LKRHLTTHHSMTPE   47 (87)
T ss_dssp             SCEECTBTCCEESB---HHHHHHHTTCSCHH
T ss_pred             CceEecccchhhHH---HHHHHHHccCCCHH
Confidence            34678888888874   67888887776663

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=89.37  E-value=0.27  Score=21.45  Aligned_cols=24  Identities=13%  Similarity=-0.009  Sum_probs=20.6

Q ss_pred             eecccccccccchHHHHHHHHHHh
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      -.|..|.+.+++-.+|.+|++-.|
T Consensus        10 qhcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            368999999999999999988655

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=88.24  E-value=0.41  Score=29.66  Aligned_cols=57  Identities=16%  Similarity=0.216  Sum_probs=41.6

Q ss_pred             cceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCCce
Q psy3948          43 YNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAH  101 (143)
Q Consensus        43 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~  101 (143)
                      .+..|+.|+..+. ...+..|....-..+...|+.|+..+ ....+..|...+.|+.++
T Consensus       109 ~~v~C~~C~~~~~-r~~l~~H~~~~C~~r~~~C~~C~~~~-~~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          109 ALMDCPQCQRPFQ-KFHINIHILKDCPRRQVSCDNCAASM-AFEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             SEEECTTTCCEEE-GGGHHHHHHHTCTTCEEECTTTCCEE-EGGGHHHHHTTCCC----
T ss_pred             eeeECCCCChHHH-HHHHHHHhhhhCCCCCeECCCCCCcc-CHHHHHhHHHhCcChhhh
Confidence            3467899998874 45688888777777888899998765 456789999888887665

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=86.96  E-value=0.07  Score=25.61  Aligned_cols=15  Identities=20%  Similarity=0.532  Sum_probs=9.2

Q ss_pred             ccccCCcchhhhccc
Q psy3948           6 TILKCTFCNIIFNKL   20 (143)
Q Consensus         6 ~~~~C~~C~~~f~~~   20 (143)
                      ..|.|-.||++|...
T Consensus         2 ~iY~C~rCg~~fs~~   16 (48)
T 4ayb_P            2 AVYRCGKCWKTFTDE   16 (48)
T ss_dssp             ---CCCCTTTTCCCC
T ss_pred             cEEEeeccCCCccHH
Confidence            357888888888544

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=86.27  E-value=0.63  Score=21.48  Aligned_cols=25  Identities=4%  Similarity=-0.037  Sum_probs=18.9

Q ss_pred             CCceecccccccccchHHHHHHHHHH
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~  123 (143)
                      +..|.|+.|+..+.. ..+..|...|
T Consensus         7 ~~~~~C~~C~~~i~~-~~~~EH~D~H   31 (39)
T 2i5o_A            7 EDQVPCEKCGSLVPV-WDMPEHMDYH   31 (39)
T ss_dssp             CCEEECTTTCCEEEG-GGHHHHHHHH
T ss_pred             CCCcccccccCcCCc-ccccchhhHH
Confidence            346889999988886 5668887766

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.39  E-value=0.29  Score=26.27  Aligned_cols=28  Identities=11%  Similarity=-0.047  Sum_probs=20.7

Q ss_pred             ceeccccccccc-------chHHHHHHHHHHhcCC
Q psy3948         100 AHKCANVIIIAI-------MYHILEIMLEDIQGRD  127 (143)
Q Consensus       100 ~~~C~~C~~~f~-------~~s~l~~h~~~~~~~~  127 (143)
                      .-.|..|++.++       .-+.|.+|++..|.++
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~e   62 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREE   62 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHHH
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHCHHH
Confidence            346777887776       3578999999888543

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=84.67  E-value=0.61  Score=25.11  Aligned_cols=37  Identities=19%  Similarity=0.451  Sum_probs=16.4

Q ss_pred             eeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCC
Q psy3948          45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSC   82 (143)
Q Consensus        45 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f   82 (143)
                      |.|..||..+.- ..+..|...=.+...+.|..|+..|
T Consensus        11 F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F   47 (79)
T 1wjv_A           11 FTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDF   47 (79)
T ss_dssp             EEESSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEE
T ss_pred             EEcCCCCCeeec-ccchhHHhhCCCCCcEEecccCCee
Confidence            556666655442 2344443322222234444444444

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=80.62  E-value=1.3  Score=18.78  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=18.5

Q ss_pred             ceecccccccccchHHHHHHHH
Q psy3948         100 AHKCANVIIIAIMYHILEIMLE  121 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~  121 (143)
                      .|.|+.|.....+...|..|-.
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            4789999999999988888854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	5e-08
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	1e-07
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	4e-07
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-06
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-06
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-05
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	8e-05
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	1e-04
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	2e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	3e-04
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	4e-04
d1x5wa1	28	g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {H	5e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.001
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	0.001
d2dmda3	29	g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {	0.002
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.004

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 5e-08
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
             +    +  KC  C  S S  S LS H++ HTG
Sbjct: 3  SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (102), Expect = 1e-07
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
          G  R  TG+KP +C  C+ S S    L++H+KRH  
Sbjct: 1  GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (99), Expect = 4e-07
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
          H+G KP  C  C  + S  S L  HQ+ HTG
Sbjct: 2  HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (95), Expect = 1e-06
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
          R HTG KP  CS C+ +   K  L +H KR+  
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (92), Expect = 4e-06
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
          R H+G KP +C  C+   +    + +H  +   
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 33

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 2e-05
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 71  KPLKCSSCNYSCSTKSALSVHQKR-HTGLKAHKC 103
           KP  C SC    S    L+ H K+ HT  + HKC
Sbjct: 4   KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (83), Expect = 8e-05
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
           +G +P  C  C  + +TK+  + H K HT 
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 1e-04
 Identities = 9/29 (31%), Positives = 9/29 (31%)

Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
          K   C  C         LS H K H   K
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (80), Expect = 2e-04
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
          KP +C  C  + S    L+ H + HTG
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 34.1 bits (79), Expect = 3e-04
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
          +   C  C  + + +  L  H + HT  K
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.1 bits (78), Expect = 4e-04
 Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 2/41 (4%)

Query: 61 IGHMRKHTGVKPLKCSSC--NYSCSTKSALSVHQKRHTGLK 99
          I    K    K  +C       +   +  +  H + H   +
Sbjct: 7  IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 5e-04
 Identities = 14/24 (58%), Positives = 20/24 (83%)

Query: 72 PLKCSSCNYSCSTKSALSVHQKRH 95
          P KCS C+YSCS+K+AL +H++ H
Sbjct: 2  PEKCSECSYSCSSKAALRIHERIH 25

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.001
 Identities = 13/46 (28%), Positives = 15/46 (32%)

Query: 50 CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
          C            HM  H G++P  C  C      K  L  H K H
Sbjct: 8  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.4 bits (74), Expect = 0.001
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 74  KCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
              +C  S + K  L  H K H+  + + C
Sbjct: 5   PEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (72), Expect = 0.002
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
          +P KC  C Y+    S L+VH + HTG
Sbjct: 2  RPFKCQICPYASRNSSQLTVHLRSHTG 28

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (71), Expect = 0.004
 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 71 KPLKCSS--CNYSCSTKSALSVHQKRHTGLK 99
          +P  C+   C    +    L  H++ HTG K
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.73
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.56
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.48
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.46
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.44
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.43
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.41
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.35
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.31
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.25
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.2
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.2
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.2
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.19
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.16
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.09
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.07
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.05
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.03
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.02
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.01
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.0
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.97
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.95
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.94
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.9
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.86
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.86
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.84
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.83
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.78
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.76
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.74
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.73
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.66
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.63
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.38
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.37
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.31
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.31
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.26
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.24
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.23
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.14
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.1
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.06
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.05
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.01
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.98
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.94
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.93
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.9
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.81
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.81
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.77
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.76
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.7
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.58
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.57
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.22
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.22
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.18
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.13
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.12
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.09
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.08
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.05
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.03
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.98
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.97
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.95
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.94
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.93
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.87
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.76
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.74
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.65
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.63
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.57
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.53
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.47
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.46
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.92
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.91
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.77
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.67
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.59
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.45
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	95.44
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.24
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.1
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.18
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.34
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	93.07
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.0
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.73
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.12
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	92.02
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.81
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	91.44
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.36
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	90.52
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.2
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	88.2
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	85.77
d1fu9a_	36	U-shaped transcription factor, different fingers {	85.36
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	82.42

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-18  Score=88.63  Aligned_cols=53  Identities=26%  Similarity=0.243  Sum_probs=49.8

Q ss_pred             CCCccCCCCCCCCCChHHHHHHHHHhcCCCceecccccccccchHHHHHHHHHH
Q psy3948          70 VKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus        70 ~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~  123 (143)
                      ++||.|. |++.|.....|..|+++|++++||.|..||+.|+..+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5799995 9999999999999999999999999999999999999999998765

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.2e-15  Score=77.19  Aligned_cols=53  Identities=28%  Similarity=0.498  Sum_probs=50.4

Q ss_pred             CcceeccCCCCccCCcchHHHhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHh
Q psy3948          42 SYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        42 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h   95 (143)
                      |++|.| .||++|.....|..|+++|++++||.|..|+++|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            578999 59999999999999999999999999999999999999999999876

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-14  Score=67.11  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=32.0

Q ss_pred             HHhcCCCceecccccccccchHHHHHHHHHHhcCC
Q psy3948          93 KRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        93 ~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      ++|+||+||.|..||+.|+..++|..|+++|++++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            57999999999999999999999999999998653

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.6e-14  Score=64.88  Aligned_cols=33  Identities=21%  Similarity=0.102  Sum_probs=30.0

Q ss_pred             HhcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          94 RHTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        94 ~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +|+|||||.|.+||+.|...++|..|+++|+++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            488999999999999999999999999999875

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.1e-15  Score=69.50  Aligned_cols=36  Identities=11%  Similarity=-0.027  Sum_probs=28.8

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      |+++|++++||.|.+||+.|...++|..|+++|+++
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            567788888888888888888888888888887764

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3e-14  Score=65.50  Aligned_cols=35  Identities=11%  Similarity=0.157  Sum_probs=31.5

Q ss_pred             HHhcCCCceecccccccccchHHHHHHHHHHhcCC
Q psy3948          93 KRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        93 ~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      ++|+||+||.|+.|++.|+.+++|.+|++.+|.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            47999999999999999999999999998777654

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.4e-14  Score=67.19  Aligned_cols=34  Identities=15%  Similarity=0.155  Sum_probs=29.0

Q ss_pred             HHHHhcCCCceecccccccccchHHHHHHHHHHh
Q psy3948          91 HQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        91 h~~~h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      |.++|+||+||.|..|++.|++.++|..|+++|-
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5678899999999999999999999999988764

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.4e-13  Score=64.11  Aligned_cols=36  Identities=8%  Similarity=-0.195  Sum_probs=27.4

Q ss_pred             CCCceecccccccccchHHHHHHHH-HHhcCCCcccc
Q psy3948          97 GLKAHKCANVIIIAIMYHILEIMLE-DIQGRDHINVN  132 (143)
Q Consensus        97 ~e~~~~C~~C~~~f~~~s~l~~h~~-~~~~~~~~~~~  132 (143)
                      -+|||.|..||+.|...++|..|++ +|++++||.|+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            3677888888888888888888865 57777887775

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.6e-13  Score=62.37  Aligned_cols=32  Identities=9%  Similarity=0.012  Sum_probs=28.9

Q ss_pred             hcCCCceecccccccccchHHHHHHHHHHhcC
Q psy3948          95 HTGLKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        95 h~~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      |+|||||.|..|++.|++.++|..|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            68999999999999999999999999988754

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=7.4e-13  Score=57.01  Aligned_cols=28  Identities=14%  Similarity=0.107  Sum_probs=26.0

Q ss_pred             CCceecccccccccchHHHHHHHHHHhc
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      ||||.|..|++.|+.+++|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999985

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.9e-12  Score=60.20  Aligned_cols=35  Identities=40%  Similarity=0.632  Sum_probs=28.7

Q ss_pred             CCCccCCCCCCCCCChHHHHHHHH-HhcCCCceecc
Q psy3948          70 VKPLKCSSCNYSCSTKSALSVHQK-RHTGLKAHKCA  104 (143)
Q Consensus        70 ~~~~~c~~c~~~f~~~~~l~~h~~-~h~~e~~~~C~  104 (143)
                      ++||.|..|++.|.....|..|++ +|++|+||.|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            578888888888888888888865 68888888886

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-12  Score=60.59  Aligned_cols=37  Identities=32%  Similarity=0.487  Sum_probs=34.7

Q ss_pred             HhhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCC
Q psy3948          62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        62 ~h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      .|+++|++++||.|..|+++|...++|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4778899999999999999999999999999999987

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.20  E-value=3.3e-12  Score=55.55  Aligned_cols=29  Identities=7%  Similarity=0.010  Sum_probs=21.7

Q ss_pred             CceecccccccccchHHHHHHHHHHhcCC
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      |||.|+.|++.|+..++|.+|+++|++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            57777777777777777777777777663

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.7e-12  Score=52.88  Aligned_cols=26  Identities=15%  Similarity=-0.162  Sum_probs=23.9

Q ss_pred             CceecccccccccchHHHHHHHHHHh
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      |||+|.+||+.|..++.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999885

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.4e-12  Score=56.18  Aligned_cols=33  Identities=42%  Similarity=0.680  Sum_probs=29.9

Q ss_pred             hcCCCCCccCCCCCCCCCChHHHHHHHHHhcCC
Q psy3948          66 KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        66 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      +|++++||.|..|+++|...+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478999999999999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.6e-12  Score=55.00  Aligned_cols=29  Identities=14%  Similarity=0.135  Sum_probs=21.6

Q ss_pred             CceecccccccccchHHHHHHHHHHhcCC
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      +||.|..|++.|+++++|.+|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            47777777777777777777777777653

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.1e-12  Score=63.75  Aligned_cols=39  Identities=5%  Similarity=-0.082  Sum_probs=31.8

Q ss_pred             HHHHHHHhcCCCceeccc--ccccccchHHHHHHHHHHhcCC
Q psy3948          88 LSVHQKRHTGLKAHKCAN--VIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        88 l~~h~~~h~~e~~~~C~~--C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      +..|. .|++|+||.|..  |++.|+..++|..|+++|++++
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34455 488999999976  9999999999999999998864

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=4.3e-11  Score=55.14  Aligned_cols=35  Identities=40%  Similarity=0.761  Sum_probs=32.4

Q ss_pred             hhhhcCCCCCccCCCCCCCCCChHHHHHHHHHhcC
Q psy3948          63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG   97 (143)
Q Consensus        63 h~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~   97 (143)
                      |.+.|++++||.|..|++.|...+.|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            67889999999999999999999999999999864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.1e-11  Score=54.24  Aligned_cols=35  Identities=40%  Similarity=0.664  Sum_probs=30.8

Q ss_pred             hhcCCCCCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      ++|+|++||.|..|+++|...+.|..|+++|+++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            46899999999999999999999999999987653

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.05  E-value=8.2e-11  Score=51.02  Aligned_cols=29  Identities=24%  Similarity=0.513  Sum_probs=25.1

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +||.|+.|+++|...+.|..|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            57888889888988899999998888885

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.2e-10  Score=50.42  Aligned_cols=29  Identities=31%  Similarity=0.473  Sum_probs=25.1

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +||.|..|++.|...+.|..|+++|+||+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            57888999999999999999999998875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=8e-11  Score=51.30  Aligned_cols=28  Identities=25%  Similarity=0.243  Sum_probs=22.7

Q ss_pred             Cceeccc--ccccccchHHHHHHHHHHhcC
Q psy3948          99 KAHKCAN--VIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        99 ~~~~C~~--C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      |||.|+.  |++.|+..++|.+|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5788877  888888888888888888764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.3e-10  Score=50.69  Aligned_cols=28  Identities=14%  Similarity=0.037  Sum_probs=24.5

Q ss_pred             Cceeccc--ccccccchHHHHHHHHHHhcC
Q psy3948          99 KAHKCAN--VIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        99 ~~~~C~~--C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      |||.|+.  |++.|+..++|.+|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899976  999999999999999999875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.7e-10  Score=52.52  Aligned_cols=32  Identities=6%  Similarity=-0.063  Sum_probs=21.8

Q ss_pred             eeccc--ccccccchHHHHHHHHHHhcCCCcccc
Q psy3948         101 HKCAN--VIIIAIMYHILEIMLEDIQGRDHINVN  132 (143)
Q Consensus       101 ~~C~~--C~~~f~~~s~l~~h~~~~~~~~~~~~~  132 (143)
                      |.|+.  |++.|+++++|.+|+++|++++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            55654  777777777777777777777777664

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=2.4e-10  Score=51.60  Aligned_cols=32  Identities=31%  Similarity=0.539  Sum_probs=25.8

Q ss_pred             cCCCCCccCCCCCCCCCChHHHHHHHHHhcCC
Q psy3948          67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        67 ~~~~~~~~c~~c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      |+|++||.|..|++.|....+|..|+++|+.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            57788888888888888888888888888764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2e-10  Score=52.27  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=27.3

Q ss_pred             ccCCC--CCCCCCChHHHHHHHHHhcCCCceecc
Q psy3948          73 LKCSS--CNYSCSTKSALSVHQKRHTGLKAHKCA  104 (143)
Q Consensus        73 ~~c~~--c~~~f~~~~~l~~h~~~h~~e~~~~C~  104 (143)
                      |.|+.  |+++|.....|..|+++|+||+||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45654  889999999999999999999999886

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2.5e-10  Score=48.91  Aligned_cols=28  Identities=36%  Similarity=0.701  Sum_probs=22.4

Q ss_pred             CCCccCCCCCCCCCChHHHHHHHHHhcC
Q psy3948          70 VKPLKCSSCNYSCSTKSALSVHQKRHTG   97 (143)
Q Consensus        70 ~~~~~c~~c~~~f~~~~~l~~h~~~h~~   97 (143)
                      ++||.|+.|+++|...+.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            4678888888888888888888888875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=2.9e-10  Score=50.24  Aligned_cols=29  Identities=14%  Similarity=0.027  Sum_probs=25.1

Q ss_pred             CCceeccc--ccccccchHHHHHHHHHHhcC
Q psy3948          98 LKAHKCAN--VIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        98 e~~~~C~~--C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      ||||.|..  |++.|+.+++|.+|+++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999977  999999999999999888753

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=6.3e-10  Score=47.95  Aligned_cols=27  Identities=11%  Similarity=-0.082  Sum_probs=23.9

Q ss_pred             Cceeccc--ccccccchHHHHHHHHHHhc
Q psy3948          99 KAHKCAN--VIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus        99 ~~~~C~~--C~~~f~~~s~l~~h~~~~~~  125 (143)
                      |||.|+.  |++.|+.+++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899976  99999999999999999875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=2.3e-10  Score=55.39  Aligned_cols=41  Identities=15%  Similarity=0.293  Sum_probs=35.5

Q ss_pred             chHHHhhhhcCCCCCccCCC--CCCCCCChHHHHHHHHHhcCCC
Q psy3948          58 GDMIGHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        58 ~~l~~h~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +.+..|+. |.+++||.|..  |++.|...+.|..|+++|+|||
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34566664 99999999976  9999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.1e-09  Score=49.87  Aligned_cols=31  Identities=26%  Similarity=0.619  Sum_probs=26.5

Q ss_pred             hhcCCCCCccCCCCCCCCCChHHHHHHHHHh
Q psy3948          65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        65 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~h   95 (143)
                      ++|+|++||.|+.|++.|...++|..|.+.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccc
Confidence            4688999999999999999999999997543

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.3e-10  Score=49.11  Aligned_cols=28  Identities=11%  Similarity=-0.004  Sum_probs=18.0

Q ss_pred             Cceecc--cccccccchHHHHHHHHHHhcC
Q psy3948          99 KAHKCA--NVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        99 ~~~~C~--~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      |||.|+  .|++.|+..++|..|+++|+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            466663  4666666666666666666655

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.6e-09  Score=45.27  Aligned_cols=26  Identities=46%  Similarity=0.729  Sum_probs=19.8

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhc
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHT   96 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~   96 (143)
                      +||.|..||++|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            47777778888888888888877774

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=8.7e-10  Score=47.00  Aligned_cols=26  Identities=8%  Similarity=-0.108  Sum_probs=22.0

Q ss_pred             Cceeccc--ccccccchHHHHHHHHHHh
Q psy3948          99 KAHKCAN--VIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        99 ~~~~C~~--C~~~f~~~s~l~~h~~~~~  124 (143)
                      |||.|+.  |++.|+.+++|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5888876  9999999999999988874

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.4e-09  Score=45.35  Aligned_cols=28  Identities=43%  Similarity=0.676  Sum_probs=24.0

Q ss_pred             CCccCCC--CCCCCCChHHHHHHHHHhcCC
Q psy3948          71 KPLKCSS--CNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        71 ~~~~c~~--c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      +||.|..  |+++|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5788877  889999999999999998886

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5e-09  Score=45.90  Aligned_cols=29  Identities=31%  Similarity=0.694  Sum_probs=24.6

Q ss_pred             CCccCC--CCCCCCCChHHHHHHHHHhcCCC
Q psy3948          71 KPLKCS--SCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        71 ~~~~c~--~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      +||.|+  .|++.|...+.|..|+++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            478885  59999999999999999999885

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.9e-09  Score=45.05  Aligned_cols=28  Identities=36%  Similarity=0.611  Sum_probs=23.8

Q ss_pred             CCccCCC--CCCCCCChHHHHHHHHHhcCC
Q psy3948          71 KPLKCSS--CNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        71 ~~~~c~~--c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      +||.|+.  |+++|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5788866  889999999999999998886

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=7.6e-09  Score=42.55  Aligned_cols=26  Identities=8%  Similarity=-0.256  Sum_probs=23.8

Q ss_pred             CCceecccccccccchHHHHHHHHHH
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~  123 (143)
                      |+||.|..||+.|..+....+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            68999999999999999999998876

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.7e-08  Score=39.36  Aligned_cols=29  Identities=17%  Similarity=0.173  Sum_probs=23.1

Q ss_pred             CCceecccccccccchHHHHHHHHHHhcC
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      |+||+|..|.+....+|.|..|++.|+++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            57888888888888888888888887764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=8.7e-08  Score=41.05  Aligned_cols=27  Identities=33%  Similarity=0.711  Sum_probs=21.4

Q ss_pred             CCccCCC--CCCCCCChHHHHHHHHHhcC
Q psy3948          71 KPLKCSS--CNYSCSTKSALSVHQKRHTG   97 (143)
Q Consensus        71 ~~~~c~~--c~~~f~~~~~l~~h~~~h~~   97 (143)
                      +||.|..  |+++|...+.|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4777765  88888888888888888875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=3.5e-07  Score=40.05  Aligned_cols=28  Identities=25%  Similarity=0.551  Sum_probs=21.3

Q ss_pred             CCCccCCC--CCCCCCChHHHHHHHHHhcC
Q psy3948          70 VKPLKCSS--CNYSCSTKSALSVHQKRHTG   97 (143)
Q Consensus        70 ~~~~~c~~--c~~~f~~~~~l~~h~~~h~~   97 (143)
                      ++||.|..  |++.|.....|..|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            46777766  88888888888888887764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.1e-07  Score=38.70  Aligned_cols=27  Identities=15%  Similarity=0.084  Sum_probs=23.7

Q ss_pred             Cceeccc--ccccccchHHHHHHHHHHhc
Q psy3948          99 KAHKCAN--VIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus        99 ~~~~C~~--C~~~f~~~s~l~~h~~~~~~  125 (143)
                      +||.|..  |++.++..|.|++|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5899965  99999999999999998764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.1e-07  Score=37.76  Aligned_cols=29  Identities=10%  Similarity=0.157  Sum_probs=26.0

Q ss_pred             CceecccccccccchHHHHHHHHHHhcCC
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      +||.|..|.+...++|+|..|++..|+.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            58999999999999999999999887654

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.1e-07  Score=40.50  Aligned_cols=29  Identities=14%  Similarity=-0.101  Sum_probs=17.6

Q ss_pred             eecccccccccchHHHHHHHHHHhcCCCc
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDIQGRDHI  129 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~~~~~~~  129 (143)
                      ..|..||+.|.+.-.|.+|+..|.+++||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            45666666666666666666666666655

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.7e-07  Score=37.99  Aligned_cols=26  Identities=19%  Similarity=0.070  Sum_probs=18.5

Q ss_pred             eecccccccccchHHHHHHHHHHhcC
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      ..|.+||+.|..++.|.+|..+|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            46777777777777777777766653

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.1e-07  Score=37.70  Aligned_cols=25  Identities=16%  Similarity=0.037  Sum_probs=14.9

Q ss_pred             ceecccccccccchHHHHHHHHHHh
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      |.+|+.|++.|++...|..|++.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            3456666666666666666665554

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3e-07  Score=38.93  Aligned_cols=26  Identities=27%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             CCccCCC--CCCCCCChHHHHHHHHHhc
Q psy3948          71 KPLKCSS--CNYSCSTKSALSVHQKRHT   96 (143)
Q Consensus        71 ~~~~c~~--c~~~f~~~~~l~~h~~~h~   96 (143)
                      +||.|..  |+++|...++|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4677766  8888888888888888775

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.4e-07  Score=39.42  Aligned_cols=30  Identities=23%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCCCce
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGLKAH  101 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e~~~  101 (143)
                      ...|..|++.|.....|..|.-+|.+|+||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            456777777777777777777777777776

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=6.1e-07  Score=37.28  Aligned_cols=29  Identities=10%  Similarity=0.033  Sum_probs=24.1

Q ss_pred             CCceecccccccccchHHHHHHHHHHhcC
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      |+||.|+.|...|....-+.-|++.|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            57888888888888888888888888754

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=8.9e-07  Score=35.68  Aligned_cols=26  Identities=23%  Similarity=0.074  Sum_probs=24.2

Q ss_pred             CceecccccccccchHHHHHHHHHHh
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      +||+|..|++...++|.|.+|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            69999999999999999999999874

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.10  E-value=1.8e-06  Score=35.13  Aligned_cols=26  Identities=8%  Similarity=-0.132  Sum_probs=22.7

Q ss_pred             Cceeccc--ccccccchHHHHHHHHHHh
Q psy3948          99 KAHKCAN--VIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        99 ~~~~C~~--C~~~f~~~s~l~~h~~~~~  124 (143)
                      .||.|+.  |++.|+..|-|.+|.++|+
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvha   29 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVHA   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhccC
Confidence            5889965  9999999999999998874

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.4e-06  Score=38.37  Aligned_cols=27  Identities=15%  Similarity=0.180  Sum_probs=23.4

Q ss_pred             cCCCceecccccccccchHHHHHHHHH
Q psy3948          96 TGLKAHKCANVIIIAIMYHILEIMLED  122 (143)
Q Consensus        96 ~~e~~~~C~~C~~~f~~~s~l~~h~~~  122 (143)
                      +|-+||.|..|++.|.++..+.+|+..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            467899999999999999999999643

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.8e-06  Score=34.18  Aligned_cols=26  Identities=42%  Similarity=0.752  Sum_probs=16.6

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcC
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTG   97 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~   97 (143)
                      |..|+.|++.|..+..|..|.+.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            34566666666666666666666654

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=3.8e-06  Score=34.35  Aligned_cols=28  Identities=14%  Similarity=0.198  Sum_probs=25.7

Q ss_pred             CceecccccccccchHHHHHHHHHHhcC
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +||+|..|.-.-..+|+|.+|++.-|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            6899999999999999999999988875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3e-06  Score=34.56  Aligned_cols=26  Identities=15%  Similarity=0.056  Sum_probs=19.7

Q ss_pred             eecccccccccchHHHHHHHHHHhcC
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      |.|+.||......|-|.+|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            67777777777777777777777754

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.4e-06  Score=34.04  Aligned_cols=26  Identities=35%  Similarity=0.502  Sum_probs=19.8

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHhcCC
Q psy3948          73 LKCSSCNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        73 ~~c~~c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      +.|..|+++|..++.|..|+-.|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            46777888888888888887777765

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.3e-06  Score=34.26  Aligned_cols=27  Identities=44%  Similarity=0.966  Sum_probs=17.9

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhcC
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHTG   97 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~~   97 (143)
                      +||.|+.|+..-..++.|..|.+.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            566666666666666666666666665

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=5.3e-06  Score=33.90  Aligned_cols=27  Identities=26%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             CCCccCCCCCCCCCChHHHHHHHHHhc
Q psy3948          70 VKPLKCSSCNYSCSTKSALSVHQKRHT   96 (143)
Q Consensus        70 ~~~~~c~~c~~~f~~~~~l~~h~~~h~   96 (143)
                      ++||.|..|++.|..+.....|.+.|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            467888888888888888888877764

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=4.1e-06  Score=34.74  Aligned_cols=27  Identities=30%  Similarity=0.677  Sum_probs=16.9

Q ss_pred             cceeccCCCCccCCcchHHHhhhhcCC
Q psy3948          43 YNYACFICTYHTRKHGDMIGHMRKHTG   69 (143)
Q Consensus        43 ~~~~c~~c~~~~~~~~~l~~h~~~~~~   69 (143)
                      +||.|++|+..|..+..+.-|.+.|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            556666666666666666666666554

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.81  E-value=4.3e-06  Score=34.99  Aligned_cols=26  Identities=12%  Similarity=0.022  Sum_probs=22.5

Q ss_pred             ceecccccccccchHHHHHHHHHHhc
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      ||.|..|++.|+.+..|.+|..+-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            78999999999999999999876553

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.9e-05  Score=32.15  Aligned_cols=27  Identities=26%  Similarity=0.550  Sum_probs=18.3

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          73 LKCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        73 ~~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      |.|+.|+....-.+.|+.|.++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            456666666666677777777777654

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.6e-05  Score=35.11  Aligned_cols=28  Identities=11%  Similarity=-0.053  Sum_probs=24.4

Q ss_pred             CCCceec--ccccccccchHHHHHHHHHHh
Q psy3948          97 GLKAHKC--ANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus        97 ~e~~~~C--~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      .+|||.|  +-|+..|.+...|..|+++|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4789999  569999999999999998886

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=3e-05  Score=30.72  Aligned_cols=26  Identities=38%  Similarity=0.745  Sum_probs=17.2

Q ss_pred             cCCCCCCCCCChHHHHHHHHHhcCCC
Q psy3948          74 KCSSCNYSCSTKSALSVHQKRHTGLK   99 (143)
Q Consensus        74 ~c~~c~~~f~~~~~l~~h~~~h~~e~   99 (143)
                      .|+.|.+.|.++.-|..|.+.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            46666666767666777766666664

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.58  E-value=1e-05  Score=31.64  Aligned_cols=23  Identities=13%  Similarity=-0.099  Sum_probs=17.4

Q ss_pred             eecccccccccchHHHHHHHHHH
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~  123 (143)
                      |+|..|.+.|...|.|.+|+++|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            56777888888888888877665

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.57  E-value=3.9e-05  Score=31.24  Aligned_cols=28  Identities=18%  Similarity=0.063  Sum_probs=22.0

Q ss_pred             Cceeccc--ccccccchHHHHHHHHHHhcC
Q psy3948          99 KAHKCAN--VIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        99 ~~~~C~~--C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      +||.|..  |.+.|.+...|.+|.-.|+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4777754  888888888888888888764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00013  Score=29.58  Aligned_cols=25  Identities=8%  Similarity=-0.035  Sum_probs=22.4

Q ss_pred             ceecccccccccchHHHHHHHHHHh
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      ||.|..|.-.|....+|.+|++..+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhh
Confidence            7999999999999999999998543

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00016  Score=28.57  Aligned_cols=26  Identities=12%  Similarity=0.148  Sum_probs=24.0

Q ss_pred             ecccccccccchHHHHHHHHHHhcCC
Q psy3948         102 KCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus       102 ~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      +|+.|.+.|.+.-.|..|-+.|++++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999874

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00019  Score=32.07  Aligned_cols=27  Identities=26%  Similarity=0.575  Sum_probs=23.0

Q ss_pred             CCCCCccCCCCCCCCCChHHHHHHHHH
Q psy3948          68 TGVKPLKCSSCNYSCSTKSALSVHQKR   94 (143)
Q Consensus        68 ~~~~~~~c~~c~~~f~~~~~l~~h~~~   94 (143)
                      +|.+||.|..|++.|.+..++..|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            467899999999999999999988753

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00034  Score=28.28  Aligned_cols=29  Identities=10%  Similarity=0.047  Sum_probs=20.7

Q ss_pred             CCceecccccccccchHHHHHHHHHHhcC
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      |..|.|..|...|..+-.|+-|+-.|+++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45677777777777777777777777653

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.12  E-value=0.00025  Score=27.52  Aligned_cols=23  Identities=52%  Similarity=0.743  Sum_probs=17.0

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHh
Q psy3948          73 LKCSSCNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        73 ~~c~~c~~~f~~~~~l~~h~~~h   95 (143)
                      |.|..|.++|..++.|..|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            45777777777777777777766

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00024  Score=27.61  Aligned_cols=22  Identities=14%  Similarity=0.090  Sum_probs=18.2

Q ss_pred             ceecccccccccchHHHHHHHH
Q psy3948         100 AHKCANVIIIAIMYHILEIMLE  121 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~  121 (143)
                      ||+|..|...|....+|..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7888888888888888888864

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.08  E-value=0.00024  Score=31.46  Aligned_cols=22  Identities=32%  Similarity=0.535  Sum_probs=8.4

Q ss_pred             cCCCCCCCCCChHHHHHHHHHh
Q psy3948          74 KCSSCNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        74 ~c~~c~~~f~~~~~l~~h~~~h   95 (143)
                      .|..|.+.|.+.++|--|++.|
T Consensus         7 ~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           7 TCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             ECTTTCCEESSHHHHHHHHHTT
T ss_pred             CCCCCCCccCCcccccchHhhh
Confidence            3333333333333333333333

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00021  Score=28.48  Aligned_cols=24  Identities=8%  Similarity=-0.133  Sum_probs=17.2

Q ss_pred             ceecccccccccchHHHHHHHHHH
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~  123 (143)
                      ||+|..||+.+-...+|..|...+
T Consensus         1 pf~c~kcgkcyfrkenllehearn   24 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEARN   24 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHC
T ss_pred             CCccccchhhhhhHhHHHHHHHHh
Confidence            577777777777777777775543

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.03  E-value=0.00023  Score=31.50  Aligned_cols=30  Identities=7%  Similarity=-0.112  Sum_probs=26.1

Q ss_pred             CCceecccccccccchHHHHHHHHHHhcCC
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      .+.|.|..|++.|.+...|=-|++.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            357999999999999999999998887554

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00032  Score=29.85  Aligned_cols=29  Identities=14%  Similarity=0.134  Sum_probs=24.7

Q ss_pred             ceecccccccccchHHHHHHHHHHhcCCC
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQGRDH  128 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~~~~~  128 (143)
                      .|.|..|++.|+++..+.+|.....+.+.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~d~   32 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGPDG   32 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCCCS
T ss_pred             eeeecccccchhcchHHHHHhhhcCCCCC
Confidence            58999999999999999999887776543

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00035  Score=27.90  Aligned_cols=25  Identities=12%  Similarity=0.157  Sum_probs=22.1

Q ss_pred             ceecccccccccchHHHHHHHHHHh
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      .|.|+.|+.+..+.|+|..|++.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4899999999999999999998654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00027  Score=32.72  Aligned_cols=25  Identities=8%  Similarity=-0.144  Sum_probs=22.8

Q ss_pred             ceecccccccccchHHHHHHHHHHh
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      .|.|..|++.|+..+.|+.|.+.|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            5889999999999999999988775

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00036  Score=28.71  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=17.1

Q ss_pred             CCccCCC--CCCCCCChHHHHHHHHHhc
Q psy3948          71 KPLKCSS--CNYSCSTKSALSVHQKRHT   96 (143)
Q Consensus        71 ~~~~c~~--c~~~f~~~~~l~~h~~~h~   96 (143)
                      +||.|..  |.+++...++|..|.+++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            3566655  6677777777777776543

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.93  E-value=0.0005  Score=26.75  Aligned_cols=24  Identities=8%  Similarity=-0.025  Sum_probs=21.5

Q ss_pred             eecccccccccchHHHHHHHHHHh
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      |.|+.|-+-|++..++..|++..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            789999999999999999998765

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00021  Score=29.69  Aligned_cols=23  Identities=9%  Similarity=-0.155  Sum_probs=17.0

Q ss_pred             Cceeccc--ccccccchHHHHHHHH
Q psy3948          99 KAHKCAN--VIIIAIMYHILEIMLE  121 (143)
Q Consensus        99 ~~~~C~~--C~~~f~~~s~l~~h~~  121 (143)
                      +||.|..  |.+.|+..|+-.+|+.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqn   25 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQN   25 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHH
T ss_pred             CCccccCCChhhhhcchhhhhhhcc
Confidence            5777755  8888888888888763

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0013  Score=26.67  Aligned_cols=24  Identities=29%  Similarity=0.643  Sum_probs=19.7

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHH
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKR   94 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~   94 (143)
                      +||.|+.|......+++|..|.++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            478888888877888888888875

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.001  Score=26.82  Aligned_cols=27  Identities=30%  Similarity=0.557  Sum_probs=16.9

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhcCC
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      .|.|..|...|...-.|..|+.+|+||
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccCC
Confidence            455666666666666666666666654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.65  E-value=0.00067  Score=27.47  Aligned_cols=27  Identities=30%  Similarity=0.621  Sum_probs=18.9

Q ss_pred             CccCCC--CCCCCCChHHHHHHHHHhcCC
Q psy3948          72 PLKCSS--CNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        72 ~~~c~~--c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      ||.|..  |.+.|.+.-.|.+|.-+|+||
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CcCcccccccccchhhhhhhhhhccccCC
Confidence            555553  777777777777777777765

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0008  Score=26.81  Aligned_cols=26  Identities=38%  Similarity=0.898  Sum_probs=20.0

Q ss_pred             CCccCCCCCCCCCChHHHHHHHHHhc
Q psy3948          71 KPLKCSSCNYSCSTKSALSVHQKRHT   96 (143)
Q Consensus        71 ~~~~c~~c~~~f~~~~~l~~h~~~h~   96 (143)
                      +|+.|..|..+-...++|..|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            57778888877777888888887763

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00034  Score=29.09  Aligned_cols=26  Identities=35%  Similarity=0.662  Sum_probs=16.3

Q ss_pred             CCccCCC--CCCCCCChHHHHHHH-HHhc
Q psy3948          71 KPLKCSS--CNYSCSTKSALSVHQ-KRHT   96 (143)
Q Consensus        71 ~~~~c~~--c~~~f~~~~~l~~h~-~~h~   96 (143)
                      +||.|+.  |.++|...+....|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            3556655  667777777667775 5554

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00078  Score=26.93  Aligned_cols=26  Identities=15%  Similarity=0.027  Sum_probs=18.7

Q ss_pred             ceecccccccccchHHHHHHHHHHhc
Q psy3948         100 AHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      |-+|++|.+..++...|+.|.++|..
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            45677777777777777777776653

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0014  Score=28.69  Aligned_cols=27  Identities=30%  Similarity=0.709  Sum_probs=17.9

Q ss_pred             CCCccC--CCCCCCCCChHHHHHHHHHhc
Q psy3948          70 VKPLKC--SSCNYSCSTKSALSVHQKRHT   96 (143)
Q Consensus        70 ~~~~~c--~~c~~~f~~~~~l~~h~~~h~   96 (143)
                      ++||.|  +.|+..|.+...|..|.+.|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            566776  346677777777777766553

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.46  E-value=0.0012  Score=26.56  Aligned_cols=25  Identities=36%  Similarity=0.639  Sum_probs=19.0

Q ss_pred             CCccCCC--CCCCCCChHHHHHHHHHh
Q psy3948          71 KPLKCSS--CNYSCSTKSALSVHQKRH   95 (143)
Q Consensus        71 ~~~~c~~--c~~~f~~~~~l~~h~~~h   95 (143)
                      .||.|+.  |++.|...+.|..|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4666664  888888888888887776

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0039  Score=24.64  Aligned_cols=23  Identities=30%  Similarity=0.642  Sum_probs=19.6

Q ss_pred             CccCCCCCCCCCChHHHHHHHHH
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKR   94 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~   94 (143)
                      ||.|..|++.+..+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68899999999999999888643

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.91  E-value=0.0024  Score=26.44  Aligned_cols=22  Identities=27%  Similarity=0.628  Sum_probs=13.7

Q ss_pred             CccCCCCCCCCCChHHHHHHHH
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQK   93 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~   93 (143)
                      ||.|..|++.|....-|..|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            4566666666666666666643

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.77  E-value=0.0022  Score=26.90  Aligned_cols=21  Identities=19%  Similarity=0.010  Sum_probs=18.1

Q ss_pred             ceecccccccccchHHHHHHH
Q psy3948         100 AHKCANVIIIAIMYHILEIML  120 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~  120 (143)
                      .|.|..||..|++.|.|.-|+
T Consensus         8 rf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHT
T ss_pred             ceeccccceeecChhHHHhhh
Confidence            588999999999999998884

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0048  Score=24.85  Aligned_cols=22  Identities=27%  Similarity=0.859  Sum_probs=12.1

Q ss_pred             eeccCCCCccCCcchHHHhhhh
Q psy3948          45 YACFICTYHTRKHGDMIGHMRK   66 (143)
Q Consensus        45 ~~c~~c~~~~~~~~~l~~h~~~   66 (143)
                      |.|..|.-+|..+..|..|+..
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHS
T ss_pred             cccceeeeeEeeccchhHhhhh
Confidence            4555555555555555555543

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.59  E-value=0.0045  Score=23.87  Aligned_cols=22  Identities=41%  Similarity=0.674  Sum_probs=18.4

Q ss_pred             CccCCCCCCCCCChHHHHHHHH
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQK   93 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~   93 (143)
                      ||.|..|...|..+..|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7888889888988888888863

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0021  Score=27.22  Aligned_cols=26  Identities=15%  Similarity=0.420  Sum_probs=19.9

Q ss_pred             cccCCcchhhhccchhhHHHhhhccc
Q psy3948           7 ILKCTFCNIIFNKLQDEELIMTHCKS   32 (143)
Q Consensus         7 ~~~C~~C~~~f~~~~~~~~~~~~c~~   32 (143)
                      .|.|..|+++|.....+.++.+.|-.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            57899999999888877777665544

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0063  Score=24.42  Aligned_cols=21  Identities=10%  Similarity=-0.200  Sum_probs=17.5

Q ss_pred             ccccccccchHHHHHHHHHHh
Q psy3948         104 ANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus       104 ~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      +-||++|+.+..|..|++-.|
T Consensus         6 ~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGG
T ss_pred             CCchhhhccHHHHHhHHHHHH
Confidence            459999999999999988543

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.24  E-value=0.015  Score=26.59  Aligned_cols=31  Identities=13%  Similarity=-0.010  Sum_probs=25.2

Q ss_pred             CCCceecccccccccchHHHHHHHHHHhcCC
Q psy3948          97 GLKAHKCANVIIIAIMYHILEIMLEDIQGRD  127 (143)
Q Consensus        97 ~e~~~~C~~C~~~f~~~s~l~~h~~~~~~~~  127 (143)
                      .+.|-.|+.|+.....+-+|++|+..-|=.+
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~k   51 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSCS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            4678899999999999999999988766443

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.011  Score=25.23  Aligned_cols=20  Identities=35%  Similarity=0.426  Sum_probs=13.5

Q ss_pred             CCCCCChHHHHHHHHHhcCC
Q psy3948          79 NYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        79 ~~~f~~~~~l~~h~~~h~~e   98 (143)
                      ++.|.....|..|++.||||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            34566677777777777765

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.0091  Score=23.79  Aligned_cols=19  Identities=5%  Similarity=-0.136  Sum_probs=16.4

Q ss_pred             cccccccchHHHHHHHHHH
Q psy3948         105 NVIIIAIMYHILEIMLEDI  123 (143)
Q Consensus       105 ~C~~~f~~~s~l~~h~~~~  123 (143)
                      -|.+.|.+.|.+++|+.+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            3999999999999998765

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.34  E-value=0.038  Score=22.52  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=10.7

Q ss_pred             CCCCCCChHHHHHHHHHhcCC
Q psy3948          78 CNYSCSTKSALSVHQKRHTGL   98 (143)
Q Consensus        78 c~~~f~~~~~l~~h~~~h~~e   98 (143)
                      |+-.|.-.+.|..|+-.|+||
T Consensus        11 C~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             GCCEESSHHHHHHHHHHHHCC
T ss_pred             cchhhccchhhhHHhhhhcCC
Confidence            444455555555555555543

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.066  Score=21.39  Aligned_cols=25  Identities=4%  Similarity=-0.085  Sum_probs=16.9

Q ss_pred             eecccccccccchHHHHHHHHHHhc
Q psy3948         101 HKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus       101 ~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      |.|..||+...+...++-|+-..|.
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             eechhHHHHHhhccCceEEEeeccc
Confidence            5677777777777777777655443

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.034  Score=23.59  Aligned_cols=23  Identities=9%  Similarity=0.037  Sum_probs=18.7

Q ss_pred             ccccccccchHHHHHHHHHHhcC
Q psy3948         104 ANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus       104 ~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      .-=++.|.....|..|+++|+++
T Consensus        11 ~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          11 SRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCcchhHHHHHHHHhhcCCC
Confidence            33455699999999999999975

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.73  E-value=0.066  Score=22.55  Aligned_cols=29  Identities=7%  Similarity=-0.030  Sum_probs=22.8

Q ss_pred             CCCceecccccccccchHHHHHHHHHHhc
Q psy3948          97 GLKAHKCANVIIIAIMYHILEIMLEDIQG  125 (143)
Q Consensus        97 ~e~~~~C~~C~~~f~~~s~l~~h~~~~~~  125 (143)
                      |+..|.|..|.+.++.-|++-+|--.-|.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            45678899999999988888888665554

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.021  Score=28.71  Aligned_cols=22  Identities=18%  Similarity=0.199  Sum_probs=19.2

Q ss_pred             ceecccccccccchHHHHHHHH
Q psy3948         100 AHKCANVIIIAIMYHILEIMLE  121 (143)
Q Consensus       100 ~~~C~~C~~~f~~~s~l~~h~~  121 (143)
                      .|-|..|++.|.+...|..|.+
T Consensus        15 qfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTT
T ss_pred             EEecccccCccCCHHHHHHHHc
Confidence            3789999999999999999954

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.09  Score=25.75  Aligned_cols=29  Identities=10%  Similarity=-0.093  Sum_probs=24.6

Q ss_pred             CCceecccccccccchHHHHHHHHHHhcC
Q psy3948          98 LKAHKCANVIIIAIMYHILEIMLEDIQGR  126 (143)
Q Consensus        98 e~~~~C~~C~~~f~~~s~l~~h~~~~~~~  126 (143)
                      ...|+|..|+..|.+-..|..|+..|-.+
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhccHH
Confidence            34699999999999999999998887643

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.81  E-value=0.11  Score=20.21  Aligned_cols=24  Identities=13%  Similarity=-0.065  Sum_probs=17.1

Q ss_pred             eec--ccccccccchHHHHHHHHHHh
Q psy3948         101 HKC--ANVIIIAIMYHILEIMLEDIQ  124 (143)
Q Consensus       101 ~~C--~~C~~~f~~~s~l~~h~~~~~  124 (143)
                      |.|  ..|++.|.....|..|+-.|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            455  348888888888888876654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.12  Score=23.63  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=18.3

Q ss_pred             CccCCCCCCCCCChHHHHHHHHHhc
Q psy3948          72 PLKCSSCNYSCSTKSALSVHQKRHT   96 (143)
Q Consensus        72 ~~~c~~c~~~f~~~~~l~~h~~~h~   96 (143)
                      -+.|..|++.|.....|..|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            3567778888888887877776663

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.031  Score=27.56  Aligned_cols=18  Identities=28%  Similarity=0.735  Sum_probs=10.1

Q ss_pred             CccccCCcchhhhccchh
Q psy3948           5 HTILKCTFCNIIFNKLQD   22 (143)
Q Consensus         5 ~~~~~C~~C~~~f~~~~~   22 (143)
                      ...|+||.|+++|..+..
T Consensus        12 ~~~y~Cp~C~~~ys~Lda   29 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEA   29 (62)
T ss_dssp             SSEEECSSSCCEEEHHHH
T ss_pred             CCceECCCCCCCcchhhH
Confidence            445666666666654443

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.16  Score=21.44  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=21.3

Q ss_pred             CceecccccccccchHHHHHHHHH
Q psy3948          99 KAHKCANVIIIAIMYHILEIMLED  122 (143)
Q Consensus        99 ~~~~C~~C~~~f~~~s~l~~h~~~  122 (143)
                      +-|.|..|-+-..++..|.+|+..
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHHh
Confidence            568999999999999999999865

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.20  E-value=0.29  Score=19.43  Aligned_cols=23  Identities=4%  Similarity=0.030  Sum_probs=18.2

Q ss_pred             ceecc--cccccccchHHHHHHHHH
Q psy3948         100 AHKCA--NVIIIAIMYHILEIMLED  122 (143)
Q Consensus       100 ~~~C~--~C~~~f~~~s~l~~h~~~  122 (143)
                      .|.|+  .|+..|+..+++.+|-..
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnr   26 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNR   26 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHH
T ss_pred             CccccCCCcceEEeehHHHHHHHhh
Confidence            46775  499999999999998654

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.20  E-value=0.1  Score=22.80  Aligned_cols=28  Identities=14%  Similarity=0.311  Sum_probs=19.7

Q ss_pred             hcccCCCCCCCCCCcceeccCCCCccCC
Q psy3948          29 HCKSCKKPKRPDKSYNYACFICTYHTRK   56 (143)
Q Consensus        29 ~c~~c~~~~~~~~~~~~~c~~c~~~~~~   56 (143)
                      .|+.|+..+.......+.|+.|+..+..
T Consensus         5 ~CP~C~seytYedg~l~vCPeC~hEW~~   32 (38)
T d2akla2           5 PCPQCNSEYTYEDGALLVCPECAHEWSP   32 (38)
T ss_dssp             CCTTTCCCCCEECSSSEEETTTTEEECT
T ss_pred             cCCCCCCcceEcCCCEEECCcccCcCCc
Confidence            4677777776666667888888876553

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=85.77  E-value=0.093  Score=22.76  Aligned_cols=10  Identities=40%  Similarity=0.707  Sum_probs=4.8

Q ss_pred             ceeccCCCCc
Q psy3948          44 NYACFICTYH   53 (143)
Q Consensus        44 ~~~c~~c~~~   53 (143)
                      .+.|.+||..
T Consensus         5 ~~vC~vCGyi   14 (36)
T d1yuza2           5 FHLCPICGYI   14 (36)
T ss_dssp             EEECSSSCCE
T ss_pred             EEECCCCCCE
Confidence            3445555544

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.36  E-value=0.39  Score=20.35  Aligned_cols=21  Identities=10%  Similarity=-0.105  Sum_probs=17.5

Q ss_pred             ecccccccccchHHHHHHHHH
Q psy3948         102 KCANVIIIAIMYHILEIMLED  122 (143)
Q Consensus       102 ~C~~C~~~f~~~s~l~~h~~~  122 (143)
                      -|..|+..|...+.+.-|++.
T Consensus        10 YC~~CDI~Fn~~~T~~aHKk~   30 (36)
T d1fu9a_          10 YCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             EETTTTEECSSHHHHHHHHHH
T ss_pred             HHhhCCceehhHHHHHHHHHh
Confidence            488899999999999988764

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.42  E-value=0.62  Score=20.14  Aligned_cols=11  Identities=45%  Similarity=0.978  Sum_probs=6.4

Q ss_pred             cceeccCCCCc
Q psy3948          43 YNYACFICTYH   53 (143)
Q Consensus        43 ~~~~c~~c~~~   53 (143)
                      ..+.|.+||..
T Consensus         4 ~~~~C~vCG~i   14 (37)
T d1nnqa2           4 KVYICPICGYT   14 (37)
T ss_dssp             CEEECTTTCCE
T ss_pred             cEEECCCCCCE
Confidence            44666666644