Psyllid ID: psy394

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK
Secondary Structure (PSIPRED)
cccccccHHHHHHHccccccccccccccccccEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccccccccccccEEcccccccccccEEHHHHcccccccEcccccc
Coil and Loop (DISEMBL)
MSINWLHHEFVHMmngfkrstrllgterveegvtyiapdnvklpeevdwrnkgavtpikdqgqcyk
Flexible Loop (DISEMBL)
MSINWLHHEFVHMMNGFKRSTRLLGTERVEEgvtyiapdnvklpeevdwrnkgavtpikdqgqcyk
Low Complexity Region (SEG)
MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK
Disordered region (IsUnstruct)
**INWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNK**************
Disordered Region (DISOPRED)
MSINWLHHEFVHMMNG*********************PDNVKLPEEVDWRNKGAVTPIKDQGQC**
Disordered Region (DISEMBL)
MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK
Disordered Region (DISPRO)
*SINWLHHEFVHMMNGFKRS***********GVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
Q95029	371	Cathepsin L OS=Drosophila	yes	N/A	0.893	0.159	0.524	3e-12
Q26636	339	Cathepsin L OS=Sarcophaga	N/A	N/A	0.893	0.174	0.533	6e-11
P25776	458	Oryzain alpha chain OS=Or	yes	N/A	0.454	0.065	0.7	4e-06
Q9GL24	333	Cathepsin L1 OS=Canis fam	yes	N/A	0.772	0.153	0.396	5e-06
P06797	334	Cathepsin L1 OS=Mus muscu	yes	N/A	0.742	0.146	0.392	7e-06
P13277	322	Digestive cysteine protei	N/A	N/A	0.757	0.155	0.396	8e-06
Q06964	308	Cysteine proteinase 3 (Fr	N/A	N/A	0.757	0.162	0.5	8e-06
Q01958	315	Histolysain OS=Entamoeba	N/A	N/A	0.803	0.168	0.436	1e-05
P07154	334	Cathepsin L1 OS=Rattus no	yes	N/A	0.742	0.146	0.375	2e-05
P36185	310	Cysteine proteinase ACP2	N/A	N/A	0.803	0.170	0.418	3e-05

>sp|Q95029|CATL_DROME Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 42/61 (68%), Gaps = 2/61 (3%)

Query: 6   LHHEFVHMMNGFKRS--TRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQ 63
           LHHEF  +MNGF  +   +L   +   +GVT+I+P +V LP+ VDWR KGAVT +KDQG 
Sbjct: 115 LHHEFRQLMNGFNYTLHKQLRAADESFKGVTFISPAHVTLPKSVDWRTKGAVTAVKDQGH 174

Query: 64  C 64
           C
Sbjct: 175 C 175

Important for the overall degradation of proteins in lysosomes. Essential for adult male and female fertility. May play a role in digestion.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 1EC: 5

>sp|Q26636|CATL_SARPE Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 6   LHHEFVHMMNGFKRSTRLLGTERVE-EGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           LHHEF   MNG+  + R L  ER    G TYI P +V +P+ VDWR  GAVT +KDQG C
Sbjct: 84  LHHEFKETMNGYNHTLRQLMRERTGLVGATYIPPAHVTVPKSVDWREHGAVTGVKDQGHC 143

Important for the overall degradation of proteins in lysosomes. Required for differentiation of imaginal disks.

Sarcophaga peregrina (taxid: 7386)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 5

>sp|P25776|ORYA_ORYSJ Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 22/30 (73%)

Query: 35  YIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           Y+A DN  LPE VDWR KGAV  IKDQG C
Sbjct: 121 YLAADNEALPESVDWRTKGAVAEIKDQGGC 150

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9GL24|CATL1_CANFA Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 7/58 (12%)

Query: 7   HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           + EF  +MNGF+        ++ ++G  +  P   ++P+ VDWR KG VTP+K+QGQC
Sbjct: 85  NEEFRQVMNGFQ-------NQKHKKGKMFQEPLFAEIPKSVDWREKGYVTPVKNQGQC 135

Important for the overall degradation of proteins in lysosomes.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 5

>sp|P06797|CATL1_MOUSE Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 7/56 (12%)

Query: 9   EFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           EF  ++NG++        ++ ++G  +  P  +K+P+ VDWR KG VTP+K+QGQC
Sbjct: 87  EFRQVVNGYRH-------QKHKKGRLFQEPLMLKIPKSVDWREKGCVTPVKNQGQC 135

Important for the overall degradation of proteins in lysosomes.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 5

>sp|P13277|CYSP1_HOMAM Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 7   HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           + +F  +M G+K+  R            + + D      EVDWR KGAVTP+KDQGQC
Sbjct: 77  NEKFNAVMKGYKKGPR--------PAAVFTSTDAAPESTEVDWRTKGAVTPVKDQGQC 126

Homarus americanus (taxid: 6706)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q06964|CPP3_ENTHI Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 8/58 (13%)

Query: 10  FVHMMNGFKRSTRLLGTER-VEEG--VTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           F  M N   R+  LL ++R VEE   VTY+   N++ PE VDWR +G VTPI+DQ QC
Sbjct: 56  FAAMTNEEYRT--LLKSKRTVEENGKVTYL---NIQAPESVDWRAQGKVTPIRDQAQC 108

Can abolish adhesion and degrade matrix proteins such as collagen, laminin and fibronectin.

Entamoeba histolytica (taxid: 5759)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q01958|CPP2_ENTHI Histolysain OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 10  FVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           F  M N   R+  LL ++R  E    +   N++ PE VDWR +G VTPI+DQ QC
Sbjct: 63  FAAMTNEEYRT--LLKSKRTTEENGQVKYLNIQAPESVDWRKEGKVTPIRDQAQC 115

Involved in the destruction of human tissue by E.histolytica. Can abolish adhesion and degrade matrix proteins such as collagen, laminin and fibronectin. May play an important role in pathogenicity.

Entamoeba histolytica (taxid: 5759)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P07154|CATL1_RAT Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 7/56 (12%)

Query: 9   EFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           EF  ++NG++        ++ ++G  +  P  +++P+ VDWR KG VTP+K+QGQC
Sbjct: 87  EFRQIVNGYRH-------QKHKKGRLFQEPLMLQIPKTVDWREKGCVTPVKNQGQC 135

Important for the overall degradation of proteins in lysosomes. Procathepsin L is required for maximal stimulation of steroidogenesis by TIMP1.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 5

>sp|P36185|ACP2_ENTHI Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 10  FVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           F  M N   R+  LL ++R  E    +   N++ PE VDWR +G VTP++DQ QC
Sbjct: 59  FAAMTNEEYRT--LLKSKRTTEENGQVKYLNIQAPESVDWRKEGKVTPLRDQAQC 111

Cysteine proteinase present in pathogenic and in nonpathogenic isolates.

Entamoeba histolytica (taxid: 5759)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
151176971	339	digestive cysteine protease [Dermestes f	0.893	0.174	0.655	2e-15
33112583	337	cathepsin-L-like cysteine peptidase 03 [	0.893	0.175	0.559	2e-14
30023547	337	cathepsin L-like cysteine proteinase [Te	0.893	0.175	0.559	3e-14
33112581	337	cathepsin-L-like cysteine peptidase 02 [	0.893	0.175	0.559	3e-14
389608655	341	cathepsin L [Papilio xuthus]	0.893	0.173	0.571	7e-14
91092014	337	PREDICTED: similar to cathepsin-L-like c	0.893	0.175	0.559	9e-14
389610697	341	cathepsin L [Papilio polytes]	0.893	0.173	0.555	2e-13
312381833	344	hypothetical protein AND_05794 [Anophele	0.893	0.171	0.560	5e-13
380014284	345	PREDICTED: cathepsin L-like [Apis florea	0.893	0.171	0.566	8e-13
328776427	351	PREDICTED: cathepsin L-like [Apis mellif	0.893	0.168	0.566	1e-12

>gi|151176971|gb|ABR88030.1| digestive cysteine protease [Dermestes frischii]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 45/61 (73%), Gaps = 2/61 (3%)

Query: 6   LHHEFVHMMNGFKRS--TRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQ 63
           LHHEFVH +NGF R+  T LLGT   E+G T+IAP NVK PE VDWR  GAVT +KDQG 
Sbjct: 83  LHHEFVHTVNGFNRTKNTPLLGTSEDEQGATFIAPANVKFPENVDWREHGAVTXVKDQGH 142

Query: 64  C 64
           C
Sbjct: 143 C 143

Source: Dermestes frischii

Species: Dermestes frischii

Genus: Dermestes

Family: Dermestidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|33112583|gb|AAP94047.1| cathepsin-L-like cysteine peptidase 03 [Tenebrio molitor]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 6   LHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           LHHEFV ++NGF R+   L +   ++ VT++ P NV+LP ++DWR+KGAVTP+KDQGQC
Sbjct: 83  LHHEFVQVLNGFNRTKSGLRSGESDDSVTFLPPANVQLPGQIDWRDKGAVTPVKDQGQC 141

Source: Tenebrio molitor

Species: Tenebrio molitor

Genus: Tenebrio

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|30023547|gb|AAO48766.2| cathepsin L-like cysteine proteinase [Tenebrio molitor]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 6   LHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           LHHEFV ++NGF R+   L +   ++ VT++ P NV+LP ++DWR+KGAVTP+KDQGQC
Sbjct: 83  LHHEFVQVLNGFNRTKSGLRSGESDDSVTFLPPANVQLPGQIDWRDKGAVTPVKDQGQC 141

Source: Tenebrio molitor

Species: Tenebrio molitor

Genus: Tenebrio

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|33112581|gb|AAP94046.1| cathepsin-L-like cysteine peptidase 02 [Tenebrio molitor]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 6   LHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           LHHEFV ++NGF R+   L +   ++ VT++ P NV+LP ++DWR+KGAVTP+KDQGQC
Sbjct: 83  LHHEFVQVLNGFNRTKSGLRSGESDDSVTFLPPANVQLPGQIDWRDKGAVTPVKDQGQC 141

Source: Tenebrio molitor

Species: Tenebrio molitor

Genus: Tenebrio

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608655|dbj|BAM17937.1| cathepsin L [Papilio xuthus]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 4/63 (6%)

Query: 6   LHHEFVHMMNGFKRSTR----LLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQ 61
           LHHEFVH MNGF ++T+    L G    E G T+I P NV LP+ VDWR  GAVT +KDQ
Sbjct: 83  LHHEFVHTMNGFNKTTKNSKGLFGKSAGERGATFITPANVHLPDHVDWRKHGAVTEVKDQ 142

Query: 62  GQC 64
           G+C
Sbjct: 143 GKC 145

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092014|ref|XP_970644.1| PREDICTED: similar to cathepsin-L-like cysteine peptidase 02 [Tribolium castaneum] gi|270001249|gb|EEZ97696.1| cathepsin L precursor [Tribolium castaneum]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 6   LHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           L+HEFVH +NG+ RS   L +  ++E +T+I P NV+LP+++DWR  GAVTP+KDQGQC
Sbjct: 83  LNHEFVHTLNGYNRSKTPLRSGELDESITFIPPANVELPKQIDWRKLGAVTPVKDQGQC 141

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389610697|dbj|BAM18960.1| cathepsin L [Papilio polytes]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 6   LHHEFVHMMNGFKRSTR----LLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQ 61
           LHHEFVH MNGF ++T+    L G    E G T+I P NV++P+ VDWR  GAVT +KDQ
Sbjct: 83  LHHEFVHTMNGFNKTTKNGKGLFGKSAGERGATFIPPANVRVPDHVDWRKHGAVTEVKDQ 142

Query: 62  GQC 64
           G+C
Sbjct: 143 GKC 145

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381833|gb|EFR27483.1| hypothetical protein AND_05794 [Anopheles darlingi]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 7/66 (10%)

Query: 6   LHHEFVHMMNGFKRS----TRLLGTER---VEEGVTYIAPDNVKLPEEVDWRNKGAVTPI 58
           LH EFVH +NGF RS    ++LLG E+   +EE +T+I P NV +P  +DWR KGAVTP+
Sbjct: 83  LHEEFVHTLNGFNRSAAAGSKLLGREQLMTIEEPITWIEPANVDVPTTIDWREKGAVTPV 142

Query: 59  KDQGQC 64
           KDQG C
Sbjct: 143 KDQGHC 148

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014284|ref|XP_003691169.1| PREDICTED: cathepsin L-like [Apis florea]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 6   LHHEFVHMMNGFKRSTRL-LGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           LHHEFV+++NGF +S    L +ER+  G ++I P NV LP++VDWR +GAVTP+KDQG C
Sbjct: 84  LHHEFVNILNGFNKSINTQLRSERMPIGASFIEPANVALPKKVDWRKEGAVTPVKDQGHC 143

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776427|ref|XP_625135.3| PREDICTED: cathepsin L-like [Apis mellifera]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 6   LHHEFVHMMNGFKRSTRL-LGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           LHHEFV+++NGF +S    L +ER+  G ++I P NV LP++VDWR +GAVTP+KDQG C
Sbjct: 90  LHHEFVNILNGFNKSINTQLRSERLPVGASFIEPANVVLPKKVDWRKEGAVTPVKDQGHC 149

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
FB|FBgn0013770	371	Cp1 "Cysteine proteinase-1" [D	0.893	0.159	0.524	5e-12
ZFIN|ZDB-GENE-030131-106	337	ctsl1a "cathepsin L, 1 a" [Dan	0.803	0.157	0.431	1.3e-08
UNIPROTKB|F1NYJ1	339	CTSL2 "Uncharacterized protein	0.787	0.153	0.464	1.7e-08
WB|WBGene00000776	337	cpl-1 [Caenorhabditis elegans	0.727	0.142	0.431	1.3e-07
ZFIN|ZDB-GENE-071004-74	335	zgc:174855 "zgc:174855" [Danio	0.803	0.158	0.396	5.7e-07
UNIPROTKB|A4IFS7	333	CTSL1 "CTSL1 protein" [Bos tau	0.772	0.153	0.465	1.2e-06
ZFIN|ZDB-GENE-030131-572	335	wu:fb37b09 "wu:fb37b09" [Danio	0.803	0.158	0.396	1.2e-06
ZFIN|ZDB-GENE-041010-76	337	ctsll "cathepsin L, like" [Dan	0.803	0.157	0.413	1.2e-06
MGI|MGI:88564	334	Ctsl "cathepsin L" [Mus muscul	0.772	0.152	0.379	2.6e-06
ZFIN|ZDB-GENE-080215-7	336	zgc:174153 "zgc:174153" [Danio	0.803	0.157	0.379	2.6e-06

FB|FBgn0013770 Cp1 "Cysteine proteinase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 32/61 (52%), Positives = 42/61 (68%)

Query:     6 LHHEFVHMMNGFKRST--RLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQ 63
             LHHEF  +MNGF  +   +L   +   +GVT+I+P +V LP+ VDWR KGAVT +KDQG 
Sbjct:   115 LHHEFRQLMNGFNYTLHKQLRAADESFKGVTFISPAHVTLPKSVDWRTKGAVTAVKDQGH 174

Query:    64 C 64
             C
Sbjct:   175 C 175

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS;NAS

GO:0030163 "protein catabolic process" evidence=NAS

GO:0005764 "lysosome" evidence=NAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0006508 "proteolysis" evidence=IEA

GO:0045169 "fusome" evidence=IDA

ZFIN|ZDB-GENE-030131-106 ctsl1a "cathepsin L, 1 a" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query:     7 HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
             H EF  +MNGFK        +R   G  ++ P+ +++P ++DWR KG VTP+KDQG+C
Sbjct:    85 HEEFRQVMNGFKHKK-----DRRFRGSLFMEPNFIEVPNKLDWREKGYVTPVKDQGEC 137

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|F1NYJ1 CTSL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query:     9 EFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
             EF  +MNG+K       +ER   G  ++ P  ++ P  VDWR KG VTP+KDQGQC
Sbjct:    88 EFRQLMNGYKHKK----SERKYRGSQFLEPSFLEAPRSVDWREKGYVTPVKDQGQC 139

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

WB|WBGene00000776 cpl-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 127 (49.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 22/51 (43%), Positives = 36/51 (70%)

Query:    14 MNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
             +NG++R   L G  R++   +++AP NV++P+EVDWR+   VT +K+QG C
Sbjct:    94 LNGYRR---LFGDSRIKNSSSFLAPFNVQVPDEVDWRDTHLVTDVKNQGMC 141

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0070265 "necrotic cell death" evidence=IMP

GO:0031983 "vesicle lumen" evidence=IDA

GO:0042718 "yolk granule" evidence=IDA

ZFIN|ZDB-GENE-071004-74 zgc:174855 "zgc:174855" [Danio rerio (taxid:7955)]

 Score = 121 (47.7 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query:     7 HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
             + EF   MNG+K+        R  +G  ++ P     P++VDWR +G VTP+KDQ QC
Sbjct:    84 NEEFRQAMNGYKQDPN-----RTSKGALFMEPSFFAAPQQVDWRQRGYVTPVKDQKQC 136

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|A4IFS7 CTSL1 "CTSL1 protein" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/58 (46%), Positives = 33/58 (56%)

Query:     7 HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
             + EF H MNGF+R     G E  E   T  A     +P  VDWR KG VTP+K+QG+C
Sbjct:    85 NEEFRHTMNGFQRQKNKKGKEFHE---TIFA----SIPPSVDWREKGYVTPVKNQGKC 135

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0002250 "adaptive immune response" evidence=IEA

ZFIN|ZDB-GENE-030131-572 wu:fb37b09 "wu:fb37b09" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query:     7 HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
             + EF   MNG+K         R  +G  ++ P     P++VDWR +G VTP+KDQ QC
Sbjct:    84 NEEFRQAMNGYKHDPN-----RTSQGPLFMEPKFFAAPQQVDWRQRGYVTPVKDQKQC 136

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

ZFIN|ZDB-GENE-041010-76 ctsll "cathepsin L, like" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query:     7 HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
             + EF   MNG+ R        R  +G  +I P     P+++DWR KG VTPIKDQ +C
Sbjct:    85 NEEFRQAMNGYNRDPN-----RKSKGSLFIEPSFFTAPQQIDWRQKGYVTPIKDQKRC 137

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

MGI|MGI:88564 Ctsl "cathepsin L" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query:     7 HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
             + EF  ++NG++        ++ ++G  +  P  +K+P+ VDWR KG VTP+K+QGQC
Sbjct:    85 NEEFRQVVNGYRH-------QKHKKGRLFQEPLMLKIPKSVDWREKGCVTPVKNQGQC 135

GO:0004177 "aminopeptidase activity" evidence=ISO

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=NAS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005764 "lysosome" evidence=ISO

GO:0005773 "vacuole" evidence=ISO

GO:0005902 "microvillus" evidence=ISO

GO:0006508 "proteolysis" evidence=ISO;IDA

GO:0007154 "cell communication" evidence=ISO

GO:0008152 "metabolic process" evidence=TAS

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=ISO;TAS

GO:0009897 "external side of plasma membrane" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030141 "secretory granule" evidence=ISO

GO:0030984 "kininogen binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0042393 "histone binding" evidence=ISO;NAS

GO:0043005 "neuron projection" evidence=ISO

GO:0043204 "perikaryon" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

GO:0048863 "stem cell differentiation" evidence=NAS

GO:0060441 "epithelial tube branching involved in lung morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-080215-7 zgc:174153 "zgc:174153" [Danio rerio (taxid:7955)]

 Score = 115 (45.5 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query:     7 HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
             + EF   MNG+K         +  +G  ++ P     P++VDWR +G VTP+KDQ QC
Sbjct:    84 NEEFRQAMNGYKHDPN-----QTSQGPLFMEPSFFAAPQQVDWRQRGYVTPVKDQKQC 136

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q95029	CATL_DROME	3, ., 4, ., 2, 2, ., 1, 5	0.5245	0.8939	0.1590	yes	N/A
P25776	ORYA_ORYSJ	3, ., 4, ., 2, 2, ., -	0.7	0.4545	0.0655	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	66
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	1e-11
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	3e-11
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	9e-11
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	2e-07
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	0.002
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	0.002

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score = 56.4 bits (137), Expect = 1e-11
 Identities = 18/22 (81%), Positives = 19/22 (86%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE  DWR KGAVTP+KDQGQC
Sbjct: 1  LPESFDWREKGAVTPVKDQGQC 22

Length = 213

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 54.5 bits (132), Expect = 3e-11
 Identities = 18/22 (81%), Positives = 19/22 (86%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE  DWR KGAVTP+KDQGQC
Sbjct: 1  LPESFDWRKKGAVTPVKDQGQC 22

Length = 175

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score = 53.8 bits (130), Expect = 9e-11
 Identities = 17/21 (80%), Positives = 18/21 (85%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          PE VDWR KGAVTP+KDQG C
Sbjct: 1  PESVDWREKGAVTPVKDQGSC 21

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 45.1 bits (106), Expect = 2e-07
 Identities = 15/21 (71%), Positives = 18/21 (85%)

Query: 44  PEEVDWRNKGAVTPIKDQGQC 64
           P+ VDWR KGAVTP+K+QG C
Sbjct: 127 PDAVDWREKGAVTPVKNQGAC 147

Length = 348

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 48  DWRNKGAVTPIKDQGQC 64
           DWR    VTP+KDQ  C
Sbjct: 271 DWRLHNGVTPVKDQKNC 287

Length = 489

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 38  PDNVKLPEEVDWRNKGAVTPIKDQG 62
           P  +   E +DWR   AVT +KDQG
Sbjct: 230 PSKIT-GEGLDWRRADAVTKVKDQG 253

Length = 448

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
KOG1542|consensus	372		99.88
PTZ00203	348	cathepsin L protease; Provisional	99.73
PTZ00021	489	falcipain-2; Provisional	99.63
PTZ00200	448	cysteine proteinase; Provisional	99.59
KOG1543|consensus	325		99.48
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	99.1
smart00645	174	Pept_C1 Papain family cysteine protease.	99.07
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	98.96
PF00112	219	Peptidase_C1: Papain family cysteine protease This	98.93
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	98.87
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	98.83
PTZ00049	693	cathepsin C-like protein; Provisional	98.76
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	98.76
COG4870	372	Cysteine protease [Posttranslational modification,	97.99
KOG1544|consensus	470		95.77
PTZ00462	1004	Serine-repeat antigen protein; Provisional	92.23

>KOG1542|consensus

Probab=99.88  E-value=2.3e-23  Score=131.32  Aligned_cols=61  Identities=36%  Similarity=0.605  Sum_probs=45.1

Q ss_pred             CCcCCCHHHHHHHHcCCCCC-cccccccccccceeeeCCCCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRS-TRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|||||.|||+++|++.+.. ...     ..............+|++||||++|+||||||||+|||
T Consensus       119 qFSDlT~eEFkk~~l~~~~~~~~~-----~~~~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGS  180 (372)
T KOG1542|consen  119 QFSDLTEEEFKKIYLGVKRRGSKL-----PGDAAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGS  180 (372)
T ss_pred             chhhcCHHHHHHHhhccccccccC-----ccccccCcCCCCCCCCcccchhccCCccccccCCcCcc
Confidence            49999999999999876543 111     11111111233568999999999999999999999997

>PTZ00203 cathepsin L protease; Provisional

Probab=99.73  E-value=5.5e-18  Score=107.96  Aligned_cols=63  Identities=32%  Similarity=0.481  Sum_probs=40.9

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeC--CCCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIA--PDNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.|||.+++++........   .......+..  ....++|++||||++|+|+||||||.|||
T Consensus        85 ~FaDlT~eEf~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGS  149 (348)
T PTZ00203         85 KFFDLSEAEFAARYLNGAAYFAAA---KQHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGS  149 (348)
T ss_pred             ccccCCHHHHHHHhcCCCcccccc---cccccccccccccccccCCCCCcCCcCCCCCCccccCCCcc
Confidence            499999999998776422111100   0000011111  11236899999999999999999999997

>PTZ00021 falcipain-2; Provisional

Probab=99.63  E-value=3.2e-16  Score=103.29  Aligned_cols=66  Identities=24%  Similarity=0.283  Sum_probs=40.4

Q ss_pred             CCcCCCHHHHHHHHcCCCCC-cccccccccc--c-c---eeeeCCCCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRS-TRLLGTERVE--E-G---VTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~-~~~~~~~~~~--~-~---~~~~~~~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.|||.++|++.... ..........  . .   ..+.......+|.++|||++|+||||||||.|||
T Consensus       217 qFsDlT~EEF~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGS  289 (489)
T PTZ00021        217 RFGDLSFEEFKKKYLTLKSFDFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGS  289 (489)
T ss_pred             ccccCCHHHHHHHhccccccccccccccccccccccccccccccccccCCccccccccCCCCCCccccccccc
Confidence            39999999999988764321 1100000000  0 0   0011111112499999999999999999999997

>PTZ00200 cysteine proteinase; Provisional

Probab=99.59  E-value=1.6e-15  Score=99.27  Aligned_cols=24  Identities=50%  Similarity=0.855  Sum_probs=23.1

Q ss_pred             CCCcccccccCCCCCCCccc-CCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQG-QCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg-~CGS   66 (66)
                      +|++||||++|+|+|||||| .|||
T Consensus       234 ~P~~~DWR~~g~vtpVkdQG~~CGS  258 (448)
T PTZ00200        234 TGEGLDWRRADAVTKVKDQGLNCGS  258 (448)
T ss_pred             CCCCccCCCCCCCCCcccCCCccch
Confidence            69999999999999999999 9997

>KOG1543|consensus

Probab=99.48  E-value=3.9e-14  Score=89.74  Aligned_cols=59  Identities=36%  Similarity=0.499  Sum_probs=41.2

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeCCCCCCCCCcccccccCCCCC-CCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTP-IKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~Vt~-Vk~Qg~CGS   66 (66)
                      .|+|+|.+||.+.+.+.......     .  ...........+|++||||++|+|++ |||||+|||
T Consensus        74 ~~~d~~~ee~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~p~s~DwR~~~~~~~~vkdQg~Cgs  133 (325)
T KOG1543|consen   74 QFADLTTEEFKRKKTGKKPPEIK-----R--DKFTEKLDGDDLPDSFDWRDKGAVTPPVKDQGSCGS  133 (325)
T ss_pred             cccccchHHHHHhhccccCcccc-----c--cccccccchhhCCCCccccccCCcCCCcCCCCcCcc
Confidence            38999999999988765433210     0  01111122357999999999987665 999999997

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=99.10  E-value=3.2e-11  Score=73.44  Aligned_cols=24  Identities=38%  Similarity=0.918  Sum_probs=22.9

Q ss_pred             CCCcccccccC----CCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKG----AVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g----~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||+.+    +|+||||||.|||
T Consensus         1 lP~~fDwr~~~~~~~~v~~v~dQg~CGs   28 (243)
T cd02621           1 LPKSFDWGDVNNGFNYVSPVRNQGGCGS   28 (243)
T ss_pred             CCCcccccccCCCCcccccCCCCCcCcc
Confidence            69999999998    9999999999997

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>smart00645 Pept_C1 Papain family cysteine protease

Probab=99.07  E-value=5.4e-11  Score=69.58  Aligned_cols=24  Identities=75%  Similarity=1.334  Sum_probs=22.9

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||.+||||++++++||||||.|||
T Consensus         1 lP~~~D~R~~~~~~~v~dQg~CGs   24 (174)
T smart00645        1 LPESFDWRKKGAVTPVKDQGQCGS   24 (174)
T ss_pred             CCCcCcccccCCCCccccCcccch
Confidence            699999999999999999999996

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=98.96  E-value=3.2e-10  Score=69.10  Aligned_cols=24  Identities=42%  Similarity=0.810  Sum_probs=22.6

Q ss_pred             CCCcccccccC---CCCCCCccc---CCCC
Q psy394           43 LPEEVDWRNKG---AVTPIKDQG---QCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g---~Vt~Vk~Qg---~CGS   66 (66)
                      ||++||||+++   +|+||||||   .|||
T Consensus         1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGs   30 (239)
T cd02698           1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGS   30 (239)
T ss_pred             CCCCcccccCCCCcccCccccCCCCCCCCc
Confidence            69999999998   999999998   8997

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=98.93  E-value=4e-10  Score=66.61  Aligned_cols=24  Identities=54%  Similarity=1.233  Sum_probs=19.4

Q ss_pred             CCCccccccc-CCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNK-GAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~-g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||+. |.++||||||.|||
T Consensus         1 lP~~~D~r~~~~~~~~v~dQg~~gs   25 (219)
T PF00112_consen    1 LPKSFDWRDKGGRITPVRDQGSCGS   25 (219)
T ss_dssp             STSSEEGGGTTTCSG---BTTSSBT
T ss_pred             CCCCEecccCCCCcCccccCCcccc
Confidence            7999999998 48999999999996

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=98.87  E-value=1e-09  Score=65.00  Aligned_cols=23  Identities=74%  Similarity=1.347  Sum_probs=22.0

Q ss_pred             CCcccccccCCCCCCCcccCCCC
Q psy394           44 PEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        44 P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      |++||||+.+.++||+|||.|||
T Consensus         1 P~~~d~r~~~~~~~v~dQg~cgs   23 (210)
T cd02248           1 PESVDWREKGAVTPVKDQGSCGS   23 (210)
T ss_pred             CCcccCCcCCCCCCCccCCCCcc
Confidence            78999999999999999999996

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=98.83  E-value=1.3e-09  Score=66.30  Aligned_cols=23  Identities=43%  Similarity=0.803  Sum_probs=20.2

Q ss_pred             CCccccccc--CCCC--CCCcccCCCC
Q psy394           44 PEEVDWRNK--GAVT--PIKDQGQCYK   66 (66)
Q Consensus        44 P~~~DWR~~--g~Vt--~Vk~Qg~CGS   66 (66)
                      |++||||++  ++++  ||||||.|||
T Consensus         1 p~~~DwR~~~~~~~~v~~v~dQg~CGs   27 (236)
T cd02620           1 PESFDAREKWPNCISIGEIRDQGNCGS   27 (236)
T ss_pred             CCcccchhhCCCCCCccccCCcccchh
Confidence            889999997  5655  9999999997

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>PTZ00049 cathepsin C-like protein; Provisional

Probab=98.76  E-value=3.1e-09  Score=72.71  Aligned_cols=27  Identities=19%  Similarity=0.342  Sum_probs=24.1

Q ss_pred             CCCCCCccccccc----CCCCCCCcccCCCC
Q psy394           40 NVKLPEEVDWRNK----GAVTPIKDQGQCYK   66 (66)
Q Consensus        40 ~~~~P~~~DWR~~----g~Vt~Vk~Qg~CGS   66 (66)
                      ..+||.+||||++    ++|+||||||.|||
T Consensus       378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGS  408 (693)
T PTZ00049        378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGS  408 (693)
T ss_pred             cccCCCCEecCcCCCCCCcccCCCCCccCcH
Confidence            3579999999985    67999999999997

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=98.76  E-value=4.1e-09  Score=70.79  Aligned_cols=27  Identities=15%  Similarity=0.352  Sum_probs=24.6

Q ss_pred             CCCCCCcccccccC---CCCCCCcccC---CCC
Q psy394           40 NVKLPEEVDWRNKG---AVTPIKDQGQ---CYK   66 (66)
Q Consensus        40 ~~~~P~~~DWR~~g---~Vt~Vk~Qg~---CGS   66 (66)
                      ..++|++||||++|   +|+||||||.   |||
T Consensus       202 ~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGS  234 (548)
T PTZ00364        202 GDPPPAAWSWGDVGGASFLPAAPPASPGRGCNS  234 (548)
T ss_pred             ccCCCCccccCcCCCCccCCCCcCCCCCCCCcC
Confidence            46799999999998   6999999999   997

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=2.4e-06  Score=55.15  Aligned_cols=25  Identities=44%  Similarity=0.718  Sum_probs=23.5

Q ss_pred             CCCCcccccccCCCCCCCcccCCCC
Q psy394           42 KLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        42 ~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .+|..+|||..|-|+|||+||.|||
T Consensus        98 s~~~~fd~r~~g~vs~v~dQg~~Gs  122 (372)
T COG4870          98 SLPSYFDRRDEGKVSPVKDQGSGGS  122 (372)
T ss_pred             cchhheeeeccCCcccccccCcccc
Confidence            4899999999999999999999996

>KOG1544|consensus

Probab=95.77  E-value=0.0024  Score=41.53  Aligned_cols=27  Identities=30%  Similarity=0.431  Sum_probs=24.6

Q ss_pred             CCCCCCccccccc--CCCCCCCcccCCCC
Q psy394           40 NVKLPEEVDWRNK--GAVTPIKDQGQCYK   66 (66)
Q Consensus        40 ~~~~P~~~DWR~~--g~Vt~Vk~Qg~CGS   66 (66)
                      ...||+.||-+.+  +.+.++-|||.|++
T Consensus       206 ~~~LPE~F~As~KWp~liH~plDQgnCa~  234 (470)
T KOG1544|consen  206 GEVLPEAFEASEKWPNLIHEPLDQGNCAG  234 (470)
T ss_pred             ccccchhhhhhhcCCccccCccccCCccc
Confidence            4679999999998  88999999999985

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=92.23  E-value=0.065  Score=39.12  Aligned_cols=18  Identities=28%  Similarity=0.573  Sum_probs=13.2

Q ss_pred             cccc-CC--CCCCCcccCCCC
Q psy394           49 WRNK-GA--VTPIKDQGQCYK   66 (66)
Q Consensus        49 WR~~-g~--Vt~Vk~Qg~CGS   66 (66)
                      |.++ .|  ..||||||.|||
T Consensus       535 ~kD~~sC~s~i~VKDQG~CGS  555 (1004)
T PTZ00462        535 LKDENNCISKIQIEDQGNCAI  555 (1004)
T ss_pred             cccCCCCCCCCCcccCCcchH
Confidence            4443 45  578999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	66
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		9e-07
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		2e-06
1pci_A	322	Procaricain Length = 322		3e-06
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		4e-06
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		6e-06
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		9e-06
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		9e-06
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		1e-05
1pip_A	212	Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al		3e-05
1stf_E	212	The Refined 2.4 Angstroms X-Ray Crystal Structure O		3e-05
1khp_A	212	Monoclinic Form Of Papain/zlfg-dam Covalent Complex		3e-05
2cio_A	212	The High Resolution X-Ray Structure Of Papain Compl		3e-05
3ima_A	212	Complex Strcuture Of Tarocystatin And Papain Length		3e-05
1ppp_A	212	Crystal Structure Of Papain-E64-C Complex. Binding		4e-05
1gec_E	216	Glycyl Endopeptidase-complex With Benzyloxycarbonyl		4e-05
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		5e-05
1ppo_A	216	Determination Of The Structure Of Papaya Protease O		5e-05
1meg_A	216	Crystal Structure Of A Caricain D158e Mutant In Com		5e-05
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		7e-05
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		9e-05
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		1e-04
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		1e-04
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		1e-04
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		1e-04
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		1e-04
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		2e-04
3of8_A	221	Structural Basis For Reversible And Irreversible In		2e-04
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		2e-04
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		2e-04
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		2e-04
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		2e-04
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		2e-04
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		2e-04
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		2e-04
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		3e-04
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		3e-04
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		3e-04
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		3e-04
3ioq_A	213	Crystal Structure Of The Carica Candamarcensis Cyst		3e-04
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		4e-04
3u8e_A	222	Crystal Structure Of Cysteine Protease From Bulbs O		4e-04
1mhw_A	175	Design Of Non-covalent Inhibitors Of Human Cathepsi		4e-04
1icf_A	175	Crystal Structure Of Mhc Class Ii Associated P41 Ii		4e-04
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		6e-04
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		7e-04
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		7e-04
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		7e-04
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		8e-04
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		8e-04
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		8e-04
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		9e-04

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 9  EFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
          EF  +MNGF+         +  +G  +  P   + P  VDWR KG VTP+K+QGQC
Sbjct: 12 EFRQVMNGFQ-------NRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQC 60

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 9   EFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           EF  +MNGF+         +  +G  +  P   + P  VDWR KG VTP+K+QGQC
Sbjct: 70  EFRQVMNGFQ-------NRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQC 118

>pdb|1PCI|A Chain A, Procaricain Length = 322

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 35  YIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           +I  D V LPE VDWR KGAVTP++ QG C
Sbjct: 99  FINEDIVNLPENVDWRKKGAVTPVRHQGSC 128

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE++DWR KGAVTP+K+QG C
Sbjct: 1  LPEQIDWRKKGAVTPVKNQGSC 22

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 21/22 (95%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE++DWR KGAVTP+K+QG+C
Sbjct: 1  LPEQIDWRKKGAVTPVKNQGKC 22

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 40  NVKLPEEVDWRNKGAVTPIKDQGQC 64
           +V +PE VDWR KGAVTP+K+QG C
Sbjct: 149 DVNIPEYVDWRQKGAVTPVKNQGSC 173

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/21 (80%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KGAVTP+KDQGQC
Sbjct: 2  PAAVDWREKGAVTPVKDQGQC 22

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 9   EFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           EF  +MNG       L   +  +G  +  P   + P  VDWR KG VTP+K+QGQC
Sbjct: 66  EFRQVMNG-------LQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQC 114

>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +PE VDWR KGAVTP+K+QG C
Sbjct: 1  IPEYVDWRQKGAVTPVKNQGSC 22

>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +PE VDWR KGAVTP+K+QG C
Sbjct: 1  IPEYVDWRQKGAVTPVKNQGSC 22

>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +PE VDWR KGAVTP+K+QG C
Sbjct: 1  IPEYVDWRQKGAVTPVKNQGSC 22

>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +PE VDWR KGAVTP+K+QG C
Sbjct: 1  IPEYVDWRQKGAVTPVKNQGSC 22

>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +PE VDWR KGAVTP+K+QG C
Sbjct: 1  IPEYVDWRQKGAVTPVKNQGSC 22

>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          PE VDWR KGAVTP+K+QG C
Sbjct: 2  PEYVDWRQKGAVTPVKNQGSC 22

>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE VDWR KGAVTP+K QG C
Sbjct: 1  LPESVDWRAKGAVTPVKHQGYC 22

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE VDWR KGAV P+K+QG+C
Sbjct: 1  LPEHVDWRAKGAVIPLKNQGKC 22

>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE VDWR KGAVTP++ QG C
Sbjct: 1  LPENVDWRKKGAVTPVRHQGSC 22

>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE VDWR KGAVTP++ QG C
Sbjct: 1  LPENVDWRKKGAVTPVRHQGSC 22

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +P  VDWR KGAVT +KDQGQC
Sbjct: 2  VPASVDWRKKGAVTSVKDQGQC 23

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP  VDWR KGAVT +KDQG+C
Sbjct: 4  LPPSVDWRQKGAVTGVKDQGKC 25

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KG VTP+K+QGQC
Sbjct: 2  PRSVDWREKGYVTPVKNQGQC 22

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KG VTP+K+QGQC
Sbjct: 2  PRSVDWREKGYVTPVKNQGQC 22

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KG VTP+K+QGQC
Sbjct: 2  PRSVDWREKGYVTPVKNQGQC 22

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KG VTP+K+QGQC
Sbjct: 2  PRSVDWREKGYVTPVKNQGQC 22

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P+ +DWR KGAVTP+K+QG C
Sbjct: 2  PQSIDWRAKGAVTPVKNQGAC 22

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KG VTP+K+QGQC
Sbjct: 2  PRSVDWREKGYVTPVKNQGQC 22

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KG VTP+K+QGQC
Sbjct: 3  PRSVDWREKGYVTPVKNQGQC 23

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KG VTP+K+QGQC
Sbjct: 2  PRSVDWREKGYVTPVKNQGQC 22

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KG VTP+K+QGQC
Sbjct: 3  PRSVDWREKGYVTPVKNQGQC 23

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP+ VDWR+ GAV  IKDQGQC
Sbjct: 1  LPDYVDWRSSGAVVDIKDQGQC 22

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP+ VDWR+ GAV  IKDQGQC
Sbjct: 1  LPDYVDWRSSGAVVDIKDQGQC 22

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP+ VDWR KG VTP+K+Q QC
Sbjct: 1  LPKSVDWRKKGYVTPVKNQKQC 22

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP+ VDWR KG VTP+K+Q QC
Sbjct: 1  LPKSVDWRKKGYVTPVKNQKQC 22

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 23  LLGTERV----EEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           L+ + RV    +  +TY +  N  LP+ VDWR KG VT +K QG C
Sbjct: 75  LMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSC 120

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR +GAVT +KDQGQC
Sbjct: 2  PAAVDWRARGAVTAVKDQGQC 22

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR +GAVT +KDQGQC
Sbjct: 2  PAAVDWRARGAVTAVKDQGQC 22

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR +GAVT +KDQGQC
Sbjct: 2  PAAVDWRARGAVTAVKDQGQC 22

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR +GAVT +KDQGQC
Sbjct: 2  PAAVDWRARGAVTAVKDQGQC 22

>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +P  +DWR KGAVTP+++QG C
Sbjct: 1  IPTSIDWRQKGAVTPVRNQGGC 22

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          PE +DWR KGAVTP+K+Q  C
Sbjct: 2  PESIDWREKGAVTPVKNQNPC 22

>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  +DWR KGAVT +KDQG C
Sbjct: 2  PASIDWRKKGAVTSVKDQGAC 22

>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KG VTP+K+QGQC
Sbjct: 2  PRSVDWREKGYVTPVKNQGQC 22

>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KG VTP+K+QGQC
Sbjct: 2  PRSVDWREKGYVTPVKNQGQC 22

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 26  TERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
           ++ +  GV Y A +N  +P+++DWR  G VT +KDQG C
Sbjct: 76  SDILSHGVPYEA-NNRAVPDKIDWRESGYVTEVKDQGNC 113

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 42 KLPEEVDWRNKGAVTPIKDQGQC 64
          + P+ VD+R KG VTP+K+QGQC
Sbjct: 2  RAPDSVDYRKKGYVTPVKNQGQC 24

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 42 KLPEEVDWRNKGAVTPIKDQGQC 64
          +LP  VDWR++G VTP+KDQ  C
Sbjct: 6  ELPAGVDWRSRGCVTPVKDQRDC 28

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P+ +D+R KG VTP+K+QGQC
Sbjct: 2  PDSIDYRKKGYVTPVKNQGQC 22

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P E DWR+KGAVT +KDQG C
Sbjct: 2  PPEWDWRSKGAVTKVKDQGMC 22

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P+ VD+R KG VTP+K+QGQC
Sbjct: 2  PDSVDYRKKGYVTPVKNQGQC 22

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P+ VD+R KG VTP+K+QGQC
Sbjct: 1  PDSVDYRKKGYVTPVKNQGQC 21

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P+ VD+R KG VTP+K+QGQC
Sbjct: 2  PDSVDYREKGYVTPVKNQGQC 22

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	66
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	1e-20
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	3e-20
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	9e-20
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	9e-20
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	1e-19
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	3e-19
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	8e-19
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	3e-16
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	3e-15
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	3e-15
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	7e-14
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	2e-13
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	2e-13
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	2e-13
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	2e-13
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	2e-13
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	2e-13
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	2e-13
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	3e-13
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	3e-13
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	3e-13
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	4e-13
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	4e-13
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	8e-13
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	9e-13
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	1e-12
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	1e-12
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	1e-12
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	2e-12
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	2e-12
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	1e-11
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	3e-11
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	9e-11
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	5e-10
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	8e-10
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	1e-09
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	2e-09
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	2e-09
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	2e-07

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score = 81.1 bits (201), Expect = 1e-20
 Identities = 17/60 (28%), Positives = 22/60 (36%)

Query: 5   WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
               EF +       +   L T+      T     N   P E+D R    VTPI+ QG C
Sbjct: 52  LSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGC 111

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score = 80.0 bits (198), Expect = 3e-20
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 1   MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
           + +N        E + +M+  +  ++       +  +TY +  N  LP+ VDWR KG VT
Sbjct: 59  LGMNHLGDMTSEEVMSLMSSLRVPSQW------QRNITYKSNPNRILPDSVDWREKGCVT 112

Query: 57  PIKDQGQC 64
            +K QG C
Sbjct: 113 EVKYQGSC 120

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score = 78.8 bits (195), Expect = 9e-20
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 1   MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
           +++N        E V  M G K                YI     + P+ VD+R KG VT
Sbjct: 58  LAMNHLGDMTSEEVVQKMTGLKVPLS----HSRSNDTLYIPEWEGRAPDSVDYRKKGYVT 113

Query: 57  PIKDQGQC 64
           P+K+QGQC
Sbjct: 114 PVKNQGQC 121

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score = 78.8 bits (195), Expect = 9e-20
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 11/68 (16%)

Query: 1   MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
           M++N        EF  +MNGF+            +G  +  P   + P  VDWR KG VT
Sbjct: 58  MAMNAFGDMTSEEFRQVMNGFQNRKP-------RKGKVFQEPLFYEAPRSVDWREKGYVT 110

Query: 57  PIKDQGQC 64
           P+K+QGQC
Sbjct: 111 PVKNQGQC 118

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score = 78.8 bits (195), Expect = 1e-19
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 1   MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
           + +N      + EF     G         T        +I  D V LPE VDWR KGAVT
Sbjct: 65  LGLNEFADLSNDEFNEKYVGSLID----ATIEQSYDEEFINEDIVNLPENVDWRKKGAVT 120

Query: 57  PIKDQGQC 64
           P++ QG C
Sbjct: 121 PVRHQGSC 128

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score = 77.7 bits (192), Expect = 3e-19
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 1   MSIN----WLHHEFVHMMNGFKRSTRLLGT-ERVEEGVTYIAPDNVKLPEEVDWRNKGAV 55
           + +N        E     +G      L      ++         +V+ P   DWR++G V
Sbjct: 69  LGVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMV 128

Query: 56  TPIKDQGQC 64
           +P+K+QG C
Sbjct: 129 SPVKNQGSC 137

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score = 76.1 bits (188), Expect = 8e-19
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 1   MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
           + +N        EF                  +         +N  +P+++DWR  G VT
Sbjct: 51  LGLNQFTDMTFEEFKAKYLTEMSRAS-----DILSHGVPYEANNRAVPDKIDWRESGYVT 105

Query: 57  PIKDQGQC 64
            +KDQG C
Sbjct: 106 EVKDQGNC 113

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score = 69.2 bits (170), Expect = 3e-16
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 1   MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
            ++N        EF+  +N  K        +  E            L   VDWR   AV+
Sbjct: 74  KAMNQFGDMSKEEFLAYVNRGKAQKP----KHPENLRMPYVSSKKPLAASVDWR-SNAVS 128

Query: 57  PIKDQGQC 64
            +KDQGQC
Sbjct: 129 EVKDQGQC 136

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A* Length = 222

 Score = 65.6 bits (161), Expect = 3e-15
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 34 TYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
          T     N   P E+D R    VTPI+ QG C
Sbjct: 1  TNACSINGNAPAEIDLRQMRTVTPIRMQGGC 31

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score = 65.7 bits (161), Expect = 3e-15
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 30 EEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
          +    Y   D        DWR  G VTP+KDQ  C
Sbjct: 7  DVIKKYKPADAKLDRIAYDWRLHGGVTPVKDQALC 41

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score = 62.2 bits (152), Expect = 7e-14
 Identities = 12/35 (34%), Positives = 15/35 (42%)

Query: 30 EEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
          EE +     +        DWR    VTP+KDQ  C
Sbjct: 5  EEVIKKYRGEENFDHAAYDWRLHSGVTPVKDQKNC 39

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 14/23 (60%), Positives = 18/23 (78%)

Query: 42 KLPEEVDWRNKGAVTPIKDQGQC 64
          +LP  VDWR++G VTP+KDQ  C
Sbjct: 6  ELPAGVDWRSRGCVTPVKDQRDC 28

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 15/22 (68%), Positives = 17/22 (77%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP  VDWR+KGAV  IK+Q QC
Sbjct: 1  LPSFVDWRSKGAVNSIKNQKQC 22

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +P  VDWR KGAVT +KDQGQC
Sbjct: 2  VPASVDWRKKGAVTSVKDQGQC 23

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A Length = 220

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP+ VDWR+ GAV  IKDQGQC
Sbjct: 1  LPDYVDWRSSGAVVDIKDQGQC 22

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score = 60.6 bits (148), Expect = 2e-13
 Identities = 14/22 (63%), Positives = 16/22 (72%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP+ VDWR KG VT +K QG C
Sbjct: 2  LPDSVDWREKGCVTEVKYQGSC 23

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score = 60.4 bits (147), Expect = 2e-13
 Identities = 16/22 (72%), Positives = 20/22 (90%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE++DWR KGAVTP+K+QG C
Sbjct: 1  LPEQIDWRKKGAVTPVKNQGSC 22

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score = 60.2 bits (147), Expect = 2e-13
 Identities = 16/22 (72%), Positives = 19/22 (86%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +PE VDWR KGAVTP+K+QG C
Sbjct: 1  IPEYVDWRQKGAVTPVKNQGSC 22

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score = 60.2 bits (147), Expect = 3e-13
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +P  +DWR KGAVTP+++QG C
Sbjct: 1  IPTSIDWRQKGAVTPVRNQGGC 22

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score = 60.2 bits (147), Expect = 3e-13
 Identities = 13/22 (59%), Positives = 17/22 (77%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP+ +DWR  GAV P+K+QG C
Sbjct: 3  LPDSIDWRENGAVVPVKNQGGC 24

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score = 60.2 bits (147), Expect = 3e-13
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE VDWR KGAVTP++ QG C
Sbjct: 1  LPENVDWRKKGAVTPVRHQGSC 22

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score = 60.4 bits (147), Expect = 4e-13
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP  VDWR KGAVT +KDQG+C
Sbjct: 4  LPPSVDWRQKGAVTGVKDQGKC 25

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score = 59.9 bits (146), Expect = 4e-13
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
           PE  DW  KG +T +K QGQC
Sbjct: 2  APESWDWSKKGVITKVKFQGQC 23

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score = 59.1 bits (143), Expect = 8e-13
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  +DWR KGAVT +KDQG C
Sbjct: 2  PASIDWRKKGAVTSVKDQGAC 22

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score = 58.7 bits (143), Expect = 9e-13
 Identities = 14/21 (66%), Positives = 18/21 (85%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P+ +DWR KGAVTP+K+QG C
Sbjct: 2  PQSIDWRAKGAVTPVKNQGAC 22

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score = 58.7 bits (143), Expect = 1e-12
 Identities = 15/21 (71%), Positives = 17/21 (80%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR KG VTP+K+QGQC
Sbjct: 2  PRSVDWREKGYVTPVKNQGQC 22

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score = 58.6 bits (143), Expect = 1e-12
 Identities = 15/21 (71%), Positives = 17/21 (80%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR +GAVT +KDQGQC
Sbjct: 2  PAAVDWRARGAVTAVKDQGQC 22

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score = 58.3 bits (142), Expect = 1e-12
 Identities = 14/21 (66%), Positives = 18/21 (85%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P+ VD+R KG VTP+K+QGQC
Sbjct: 2  PDSVDYRKKGYVTPVKNQGQC 22

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score = 58.2 bits (142), Expect = 2e-12
 Identities = 14/21 (66%), Positives = 17/21 (80%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          PE +DWR KGAVTP+K+Q  C
Sbjct: 2  PESIDWREKGAVTPVKNQNPC 22

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 15/21 (71%), Positives = 17/21 (80%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P E DWR+KGAVT +KDQG C
Sbjct: 2  PPEWDWRSKGAVTKVKDQGMC 22

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score = 56.7 bits (137), Expect = 1e-11
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 7   HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGA---VTPIKDQGQ 63
             + +    G  R         +      I    + LP   DWRN      V+P+++Q  
Sbjct: 174 LGDMIRRSGGHSRKIPRPKPAPL---TAEIQQKILFLPTSWDWRNVHGINFVSPVRNQAS 230

Query: 64  C 64
           C
Sbjct: 231 C 231

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score = 55.4 bits (134), Expect = 3e-11
 Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 7/62 (11%)

Query: 7  HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVD----WRNKGAVTPIKDQG 62
            E   +    K++        + +           LP   D    W N   +  I DQ 
Sbjct: 39 LREAKRLNGVIKKNNN---ASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQS 95

Query: 63 QC 64
           C
Sbjct: 96 AC 97

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score = 53.2 bits (129), Expect = 9e-11
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 44 PEEVDWRNKGA-VTPIKDQGQC 64
          P  +DWR KG  V+P+K+QG C
Sbjct: 2  PPSMDWRKKGNFVSPVKNQGSC 23

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score = 51.9 bits (125), Expect = 5e-10
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 8/63 (12%)

Query: 10 FVHMMNGFK--RSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAV---TPIKDQ--- 61
          F      ++  R   L    R      +       LP+  DWRN   V   +  ++Q   
Sbjct: 1  FRRGQTCYRPLRGDGLAPLGRTTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHIP 60

Query: 62 GQC 64
            C
Sbjct: 61 QYC 63

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score = 51.2 bits (123), Expect = 8e-10
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
               D  N  +   ++DQG C
Sbjct: 10 CNRLKDENNCISNLQVEDQGNC 31

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 12/65 (18%)

Query: 4  NWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNK----GAVTPIK 59
          N        +   F    +             +  +++KLP   D R +      +  I+
Sbjct: 33 NVDMSYLKRLCGTFLGGPKPP--------QRVMFTEDLKLPASFDAREQWPQCPTIKEIR 84

Query: 60 DQGQC 64
          DQG C
Sbjct: 85 DQGSC 89

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)

Query: 38 PDNVKLPEEVDWRNK----GAVTPIKDQGQC 64
           +++KLP   D R +      +  I+DQG C
Sbjct: 2  TEDLKLPASFDAREQWPQCPTIKEIRDQGSC 32

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score = 49.9 bits (120), Expect = 2e-09
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 4/28 (14%)

Query: 41 VKLPEEVDWRNK----GAVTPIKDQGQC 64
          V++P   D R K     ++  I+DQ +C
Sbjct: 1  VEIPSSFDSRKKWPRCKSIATIRDQSRC 28

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 17/78 (21%)

Query: 1  MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAP--------------DNVKLPEE 46
          M  +  HH     +       + +   R + G  YI                    LP +
Sbjct: 1  MGSSHHHHHHSSGLVPRGSHMQTVLKRRKKSGYGYIPDIADIRDFSYTPEKSVIAALPPK 60

Query: 47 VDWRNKGAVTPIKDQGQC 64
          VD         + DQG+ 
Sbjct: 61 VDLTPP---FQVYDQGRI 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	99.84
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	99.81
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	99.78
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	99.78
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	99.78
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	99.78
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	99.76
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	99.71
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	99.71
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	99.67
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	99.65
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	99.6
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	99.37
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	99.36
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	99.36
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	99.36
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	99.36
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	99.34
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	99.34
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	99.34
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	99.34
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	99.34
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	99.34
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	99.34
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	99.34
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	99.33
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	99.33
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	99.33
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	99.33
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	99.33
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	99.32
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	99.31
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	99.31
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	99.3
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	99.29
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	99.21
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	99.17
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	99.05
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	98.93
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	98.64
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	97.93
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	97.8
3f75_P	106	Toxopain-2, cathepsin L propeptide; medical struct	97.17
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	97.05

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=99.84  E-value=2.1e-21  Score=123.12  Aligned_cols=63  Identities=32%  Similarity=0.484  Sum_probs=45.1

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeCCCCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||+++|++........   ..............+||++||||++|+||||||||.|||
T Consensus       113 ~FaDlT~eEf~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lP~s~DWR~~g~VtpVkdQG~CGS  175 (363)
T 3tnx_A          113 VFADMSNDEFKEKYTGSIAGNYTT---TELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGS  175 (363)
T ss_dssp             TTTTSCHHHHHHHHSCSSCSCCCC---SSSSSSCCCCCSCCCCCSCEEGGGGTCCCCCCBCCSSBC
T ss_pred             ccccCCHHHHHHHhcccccccccc---cccccccccCcccCCCCcceecccCCCCCCCccCCcCCc
Confidence            599999999999998755432211   011111122233467999999999999999999999997

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=99.81  E-value=2.9e-20  Score=116.66  Aligned_cols=61  Identities=26%  Similarity=0.568  Sum_probs=44.0

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeCC------CCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAP------DNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||.++|++.......     ......+...      ....+|++||||++|+||||||||.|||
T Consensus        73 ~FaDlt~eEf~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGS  139 (331)
T 3qj3_A           73 LFTDMTPEEMKAYTHGLIMPADL-----HKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGS  139 (331)
T ss_dssp             TTTTCCHHHHHHHHSCCCCCSST-----TTTCEEECSGGGGTCCSSCCCCSSEEGGGGTCSCCCCBCCSSCC
T ss_pred             ccccCCHHHHHHHhccccccccc-----cccCcccccccccccccccCCCcceecccCCccCCCccCcccch
Confidence            49999999999998876532111     0111122111      2347999999999999999999999997

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=99.78  E-value=2.4e-19  Score=111.86  Aligned_cols=59  Identities=39%  Similarity=0.667  Sum_probs=43.4

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeCCCCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||.++|+|......      . ....+.......+|++||||++|+||||||||+|||
T Consensus        62 ~F~Dlt~eEf~~~~~g~~~~~~------~-~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGS  120 (316)
T 1cs8_A           62 AFGDMTSEEFRQVMNGFQNRKP------R-KGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGS  120 (316)
T ss_dssp             TTTTCCHHHHHHHHCCBCCCCC------S-CCEECCCCTTCCCCSCEEGGGGTCCCCCCBCCSSSC
T ss_pred             ccCCCCHHHHHHHhcCCCCCcc------c-cCccccCccccCCCCcEecCCCCCcCCCCcccCCcc
Confidence            4999999999988877543211      0 111222222346999999999999999999999997

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=99.78  E-value=3e-19  Score=111.71  Aligned_cols=62  Identities=35%  Similarity=0.549  Sum_probs=44.0

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeCCCCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||.++++|........    ......+.......+|++||||++|+||||||||+|||
T Consensus        69 ~FaDlt~eEf~~~~~g~~~~~~~~----~~~~~~~~~~~~~~lP~~~DwR~~g~vt~VkdQg~CGS  130 (322)
T 1pci_A           69 EFADLSNDEFNEKYVGSLIDATIE----QSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCGS  130 (322)
T ss_dssp             TTTTSCHHHHHHHHCCCBCCCSSC----CCCSEECCCCCCCCSCSCEETTTTTCCCCCCBCTTSCC
T ss_pred             ccccCCHHHHHHHhcCCCCccccc----cccccccccccccCCCCeEecccCCCCCCccccccCCc
Confidence            499999999999888754322110    01111122222347999999999999999999999997

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=99.78  E-value=2e-19  Score=112.20  Aligned_cols=60  Identities=32%  Similarity=0.551  Sum_probs=41.5

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeCCCCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||.++|+|.......     . ....+.......+|++||||++|+||||||||+|||
T Consensus        63 ~FaDlt~eEf~~~~~g~~~~~~~-----~-~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGS  122 (315)
T 2c0y_A           63 HLGDMTSEEVMSLMSSLRVPSQW-----Q-RNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGA  122 (315)
T ss_dssp             GGGGCCHHHHHHHTTSBCCCCGG-----G-SCBCC------CCCSCEETTTTTCCCCCCBCTTSCC
T ss_pred             ccccCCHHHHHHHhcCCCCCccc-----c-CCccccCcccCCCCCeEecCCCCCcCCCcCcccCCC
Confidence            49999999999888775432211     0 111121122346999999999999999999999997

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=99.78  E-value=3.6e-19  Score=111.01  Aligned_cols=61  Identities=34%  Similarity=0.486  Sum_probs=42.7

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeCCCCCC-CCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVK-LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||.++|+|.......     ......+....... ||++||||++|+||||||||+|||
T Consensus        62 ~FaDlt~eEf~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGS  123 (314)
T 1by8_A           62 HLGDMTSEEVVQKMTGLKVPLSH-----SRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGS  123 (314)
T ss_dssp             TTSSSCHHHHHHHSCCCCCCSCC-----CCSSSSSBCCCCSSCCCSCCBSTTTTCSCCCCBCCSSSC
T ss_pred             ccccCCHHHHHHHhccCCCCccc-----ccCCccccccccccCCCCeEeCCCCCCCCCcccCCCCCC
Confidence            49999999999888775432211     00111121111223 999999999999999999999997

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=99.76  E-value=6.6e-19  Score=109.66  Aligned_cols=60  Identities=32%  Similarity=0.601  Sum_probs=41.4

Q ss_pred             CCcCCCHHHHHHHHcC-CCCCcccccccccccceeeeCCCCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNG-FKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||.++|+| .......     ......+.... ..||++||||++|+||||||||+|||
T Consensus        55 ~F~Dlt~eEf~~~~~g~~~~~~~~-----~~~~~~~~~~~-~~lP~~~DwR~~g~vtpVkdQg~CGS  115 (310)
T 2o6x_A           55 QFTDMTFEEFKAKYLTEMSRASDI-----LSHGVPYEANN-RAVPDKIDWRESGYVTEVKDQGNCGS  115 (310)
T ss_dssp             TTTTSCHHHHHHHHCCCCCCGGGG-----SCSSEECCC-----CCSCEEGGGGTCCCCCCBCCSSCC
T ss_pred             ccCCCCHHHHHHHhcCCCCCcccc-----cccCCcccccc-CCCCCeEecCcCCCCCCcccCCCCCc
Confidence            4999999999988877 4432111     00111221111 26999999999999999999999997

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=99.71  E-value=3.4e-18  Score=107.27  Aligned_cols=60  Identities=28%  Similarity=0.449  Sum_probs=40.4

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccc-cceeeeCCCCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVE-EGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||.+ |+|.+......   ... ....+.... ..||++||||++ +||||||||+|||
T Consensus        78 ~FaDlt~eEf~~-~~g~~~~~~~~---~~~~~~~~~~~~~-~~lP~~~DwR~~-~vtpVkdQg~CGS  138 (329)
T 3qt4_A           78 QFGDMSKEEFLA-YVNRGKAQKPK---HPENLRMPYVSSK-KPLAASVDWRSN-AVSEVKDQGQCGS  138 (329)
T ss_dssp             GGGGCCHHHHHH-HHHHTCCC---------CCEEECCCCC-SCCCSCEECTTT-SCCCCCBCCSSBC
T ss_pred             ccccCCHHHHHH-hcCCccccccc---ccccccccccCCc-cCCCCCEEcccc-ccCCCccCCCCcC
Confidence            499999999999 76644211100   000 111222222 479999999999 9999999999997

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=99.71  E-value=1.9e-18  Score=107.72  Aligned_cols=61  Identities=25%  Similarity=0.238  Sum_probs=41.0

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeCC-----CCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAP-----DNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||.+++++.......     ......+...     ....+|++||||++|+||||||||+|||
T Consensus        48 ~F~Dlt~eEf~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGS  113 (312)
T 1xkg_A           48 HLSDLSLDEFKNRFLMSAEAFEH-----LKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGS  113 (312)
T ss_dssp             TTTTSCHHHHHHHHSBCHHHHHH-----HHHHHC-----CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBC
T ss_pred             cccCCCHHHHHHHhcCCCCcccc-----ccCCcccccccccccccccCCCccccccCCCcCCccccCCCCc
Confidence            49999999999977763221110     0000111111     1137999999999999999999999997

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=99.67  E-value=1.1e-17  Score=108.24  Aligned_cols=63  Identities=21%  Similarity=0.296  Sum_probs=23.4

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeCCCCCCCCCcccccccC---CCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKG---AVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g---~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||++++++........   ...............||++||||+++   +||||||||+|||
T Consensus       168 ~faDlT~eEf~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lP~s~DwR~~~g~~~VtpVkdQG~CGS  233 (441)
T 3pdf_A          168 EYETLTLGDMIRRSGGHSRKIPRP---KPAPLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQASCGS  233 (441)
T ss_dssp             -----------------------------------------CCCSCEETTCBTTBCCSCCCCBCTTSBC
T ss_pred             ccccCCHHHHHHHhCCCccccccc---ccCccccccccccccCCCCEECCcCCCCCccCcccccCCCch
Confidence            489999999999887653221110   00000111112235799999999974   8999999999997

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=99.65  E-value=8.8e-18  Score=105.20  Aligned_cols=62  Identities=16%  Similarity=0.198  Sum_probs=26.0

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeC-CCCCCCCCccccccc----CCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIA-PDNVKLPEEVDWRNK----GAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~~~DWR~~----g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||++++ |........   .......+.. .....||++||||++    |+||||||||+|||
T Consensus        33 ~f~dlt~eE~~~~~-g~~~~~~~~---~~~~~~~~~~~~~~~~lP~s~DwR~~w~~~g~vtpVkdQg~CGS   99 (325)
T 3hhi_A           33 VMQNITLREAKRLN-GVIKKNNNA---SILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGS   99 (325)
T ss_dssp             ---------------------------CCSCBCCCCHHHHHCCCCSCEEHHHHSTTCTTTTCCCBCCSSBC
T ss_pred             ccccCCHHHHHHHh-CCCCCCccc---ccccCccccccccccCCCCcEehhHhcCCCCccccccCCCCccc
Confidence            49999999999865 433221100   0000111110 112479999999999    89999999999997

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=99.60  E-value=5.5e-16  Score=96.76  Aligned_cols=57  Identities=21%  Similarity=0.248  Sum_probs=39.4

Q ss_pred             CcCCCHHHHHHHHcCCCCCcccccccccccceeeeCCCCCCCCCccccccc----CCCCCCCcccCCCC
Q psy394            2 SINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNK----GAVTPIKDQGQCYK   66 (66)
Q Consensus         2 fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~----g~Vt~Vk~Qg~CGS   66 (66)
                      |+|++.||++. |+|.......       ....+.......||++||||++    |+||||||||+|||
T Consensus        31 f~~~~~e~~~~-~lg~~~~~~~-------~~~~~~~~~~~~lP~s~DwR~~~~~c~~vtpVkdQg~CGS   91 (317)
T 3pbh_A           31 FYNVDMSYLKR-LCGTFLGGPK-------PPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGS   91 (317)
T ss_dssp             CSSCCHHHHHH-TCCBCTTCCC-------CSEEECCCSCCCCCSSEEHHHHCTTCGGGTCCCBCCSSCC
T ss_pred             cccCCHHHHHH-HcCCCCCccc-------cCcccccccccCCCCCEechhccCCCCCcCCccccCCccc
Confidence            78888877776 5565433221       1111222223579999999998    68999999999997

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=99.37  E-value=1.5e-13  Score=81.65  Aligned_cols=24  Identities=63%  Similarity=1.132  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      +|++||||++|+||||||||.|||
T Consensus         1 lP~~~Dwr~~g~vtpVkdQg~cGs   24 (215)
T 3i06_A            1 APAAVDWRARGAVTAVKDQGQCGS   24 (215)
T ss_dssp             CCSEEEGGGGTCCCCCCBCCSSCC
T ss_pred             CCCcccCCcCCCCCCCCCCCCCcc
Confidence            699999999999999999999997

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=99.36  E-value=1.8e-13  Score=81.17  Aligned_cols=24  Identities=54%  Similarity=1.214  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+||||||||.|||
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGs   24 (213)
T 3ioq_A            1 IPTSIDWRQKGAVTPVRNQGGCGS   24 (213)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBC
T ss_pred             CCCCCCcccCCCCCCCCcCCCChh
Confidence            699999999999999999999997

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=99.36  E-value=1.9e-13  Score=81.02  Aligned_cols=24  Identities=58%  Similarity=1.057  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||+|||
T Consensus         1 lP~~~Dwr~~~~v~pvkdQg~cGs   24 (215)
T 3kwz_A            1 APDSVDYRKKGYVTPVKNQGQCGS   24 (215)
T ss_dssp             CTTCEETTTTTCCCCCCBCTTSBC
T ss_pred             CCCCCccCcCCCCCCcccCCCCcH
Confidence            699999999999999999999997

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=99.36  E-value=2.2e-13  Score=80.84  Aligned_cols=24  Identities=63%  Similarity=1.052  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||.|||
T Consensus         1 lP~~~DwR~~~~vt~VkdQg~cGs   24 (214)
T 1m6d_A            1 APPEWDWRSKGAVTKVKDQGMCGS   24 (214)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBC
T ss_pred             CCCcCcCCCCCCCCCCccCCCCch
Confidence            699999999999999999999997

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=99.36  E-value=2.3e-13  Score=80.79  Aligned_cols=24  Identities=58%  Similarity=1.085  Sum_probs=23.3

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+||||||||.|||
T Consensus         2 lP~~~DwR~~~~vtpVkdQg~cGs   25 (218)
T 3ovx_A            2 LPDSVDWREKGCVTEVKYQGSCGA   25 (218)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSCC
T ss_pred             CCCCCCcccCCCCCCCccCCCCcc
Confidence            799999999999999999999997

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=99.34  E-value=2.8e-13  Score=80.18  Aligned_cols=24  Identities=67%  Similarity=1.327  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||.|||
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGs   24 (208)
T 1o0e_A            1 LPEQIDWRKKGAVTPVKNQGSCGS   24 (208)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBC
T ss_pred             CCCcCcCCCCCCCCCCccCCCCcc
Confidence            699999999999999999999997

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A

Probab=99.34  E-value=2.9e-13  Score=80.51  Aligned_cols=24  Identities=67%  Similarity=1.149  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+||||||||.|||
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGs   24 (220)
T 3p5u_A            1 LPDYVDWRSSGAVVDIKDQGQCGS   24 (220)
T ss_dssp             CCSCEETTTTTCSCCCCBCCSSBC
T ss_pred             CCCCCcCCcCCCCCCCCcCCCChh
Confidence            699999999999999999999997

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=99.34  E-value=3e-13  Score=80.65  Aligned_cols=24  Identities=58%  Similarity=1.093  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||.|||
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGS   24 (222)
T 3u8e_A            1 APASIDWRKKGAVTSVKDQGACGM   24 (222)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSCSS
T ss_pred             CCCcCcCCcCCCCCCcccCCCCcc
Confidence            699999999999999999999997

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=99.34  E-value=2.9e-13  Score=80.26  Aligned_cols=24  Identities=67%  Similarity=1.252  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||.|||
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~CGs   24 (212)
T 2cio_A            1 IPEYVDWRQKGAVTPVKNQGSCGS   24 (212)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBC
T ss_pred             CCCcccCCCCCCCCCCccCCccch
Confidence            699999999999999999999997

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*

Probab=99.34  E-value=2.2e-13  Score=81.07  Aligned_cols=26  Identities=42%  Similarity=0.658  Sum_probs=24.8

Q ss_pred             CCCCCcccccccCCCCCCCcccCCCC
Q psy394           41 VKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        41 ~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ..||++||||++|+||||||||.|||
T Consensus         8 ~~lP~~~DwR~~~~vtpVkdQg~cGs   33 (222)
T 3f5v_A            8 GNAPAEIDLRQMRTVTPIRMQGGCGS   33 (222)
T ss_dssp             CCCCSCEEHHHHTCSCCCCBCCSSBC
T ss_pred             cCCCCCCCCccCCCCCCCCCCCCChh
Confidence            47999999999999999999999997

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=99.34  E-value=3.2e-13  Score=80.25  Aligned_cols=24  Identities=58%  Similarity=1.161  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||.|||
T Consensus         1 lP~~~DwR~~~~vtpVkdQg~cGs   24 (214)
T 2bdz_A            1 YPESIDWREKGAVTPVKNQNPCGS   24 (214)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBC
T ss_pred             CCCcEeCCCCCCCCCCccCCCCcc
Confidence            699999999999999999999997

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=99.34  E-value=4.6e-13  Score=80.81  Aligned_cols=27  Identities=41%  Similarity=0.608  Sum_probs=25.2

Q ss_pred             CCCCCCcccccccCCCCCCCcccCCCC
Q psy394           40 NVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        40 ~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ...||++||||++|+|+||||||.|||
T Consensus        17 ~~~lP~~~DwR~~~~vtpVkdQg~cGs   43 (243)
T 3bwk_A           17 AKLDRIAYDWRLHGGVTPVKDQALCGS   43 (243)
T ss_dssp             CCCCCSCEEGGGTTCCCCCCBCCSSCC
T ss_pred             cccCCCceecCcCCCCCCCccCCCCch
Confidence            457999999999999999999999997

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=99.34  E-value=3.5e-13  Score=80.13  Aligned_cols=24  Identities=67%  Similarity=1.288  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||.|||
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGs   24 (216)
T 1ppo_A            1 LPENVDWRKKGAVTPVRHQGSCGS   24 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBC
T ss_pred             CCCcCcCCCCCCCCCCccCCcCcc
Confidence            699999999999999999999997

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=99.33  E-value=3.5e-13  Score=80.18  Aligned_cols=24  Identities=63%  Similarity=1.167  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||.|||
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGs   24 (220)
T 2xu3_A            1 APRSVDWREKGYVTPVKNQGQCGS   24 (220)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBC
T ss_pred             CCCcEeCCCCCCCCCCcccCcccH
Confidence            699999999999999999999997

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=99.33  E-value=3.5e-13  Score=80.36  Aligned_cols=25  Identities=52%  Similarity=1.169  Sum_probs=23.5

Q ss_pred             CCCCcccccccCCCCCCCcccCCCC
Q psy394           42 KLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        42 ~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .||++||||++|+|+||||||+|||
T Consensus         2 ~lP~~~DwR~~~~v~~VkdQg~cGs   26 (221)
T 1cqd_A            2 DLPDSIDWRENGAVVPVKNQGGCGS   26 (221)
T ss_dssp             -CCSCEETTTTTCCCCCCBCTTSBC
T ss_pred             CCCCcCcCCCCCCcCCcccCCCCcc
Confidence            5899999999999999999999997

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=99.33  E-value=3.5e-13  Score=80.17  Aligned_cols=24  Identities=58%  Similarity=1.204  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||.|||
T Consensus         1 lP~~~DwR~~~~v~pVkdQg~cGs   24 (218)
T 1yal_A            1 YPQSIDWRAKGAVTPVKNQGACGS   24 (218)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBC
T ss_pred             CCCcCcCCCCCCCCCCccCccchh
Confidence            699999999999999999999997

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=99.33  E-value=4e-13  Score=80.50  Aligned_cols=25  Identities=64%  Similarity=1.153  Sum_probs=23.8

Q ss_pred             CCCCcccccccCCCCCCCcccCCCC
Q psy394           42 KLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        42 ~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      +||++||||++|+|+||||||.|||
T Consensus         1 ~lP~~~DwR~~~~vtpVkdQg~cGs   25 (229)
T 1s4v_A            1 TVPASVDWRKKGAVTSVKDQGQCGS   25 (229)
T ss_dssp             CCCSCEETTTTTCCCCCCBCCSSBC
T ss_pred             CCCCCEeCCCCCCCCCCccCccchH
Confidence            4899999999999999999999997

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=99.33  E-value=3.9e-13  Score=79.92  Aligned_cols=24  Identities=63%  Similarity=1.021  Sum_probs=23.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||.|||
T Consensus         1 lP~~~DwR~~~~v~~VkdQg~cGs   24 (215)
T 1iwd_A            1 LPSFVDWRSKGAVNSIKNQKQCGS   24 (215)
T ss_dssp             CCSCEEGGGGTCSCCCCBCCSSBC
T ss_pred             CCCcEeCCCCCCCCCcccCCCCch
Confidence            699999999999999999999997

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=99.32  E-value=4.6e-13  Score=81.03  Aligned_cols=25  Identities=48%  Similarity=0.852  Sum_probs=23.4

Q ss_pred             CCCCcccccccCCCCCCCcccCCCC
Q psy394           42 KLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        42 ~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      +||++||||++|+|+||||||.|||
T Consensus         1 ~lP~~~DwR~~g~vtpVkdQg~CGs   25 (246)
T 2b1m_A            1 DAPESWDWSKKGVITKVKFQGQCGS   25 (246)
T ss_dssp             -CCSCEEGGGTTCCCCCCBCCSSCC
T ss_pred             CCCCcCCCCCCCCCCCcccCCCCch
Confidence            4899999999999999999999997

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=99.31  E-value=5.8e-13  Score=81.37  Aligned_cols=26  Identities=62%  Similarity=1.081  Sum_probs=24.1

Q ss_pred             CCCCCcccccccCCCCCCCcccCCCC
Q psy394           41 VKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        41 ~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ..||++||||++|+||||||||.|||
T Consensus         2 ~~lP~~~DwR~~g~vtpVkdQg~CGS   27 (262)
T 2fo5_A            2 SDLPPSVDWRQKGAVTGVKDQGKCGS   27 (262)
T ss_dssp             -CCCSCEETTTTTCCCCCCBCTTSCC
T ss_pred             CCCCCcccCCCCCCCCCCCCCCCCch
Confidence            36899999999999999999999997

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=99.31  E-value=8.4e-13  Score=79.59  Aligned_cols=27  Identities=37%  Similarity=0.565  Sum_probs=25.1

Q ss_pred             CCCCCCcccccccCCCCCCCcccCCCC
Q psy394           40 NVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        40 ~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ...||++||||++|+|+||||||.|||
T Consensus        15 ~~~lP~~~DwR~~~~vtpVkdQg~CGs   41 (241)
T 2oul_A           15 ENFDHAAYDWRLHSGVTPVKDQKNCGS   41 (241)
T ss_dssp             CCCCSSCEEGGGTTCCCCCCBCCSSBC
T ss_pred             cccCCCccccCcCCCCCCCccCccchH
Confidence            356999999999999999999999997

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=99.30  E-value=4.1e-13  Score=79.90  Aligned_cols=26  Identities=54%  Similarity=1.068  Sum_probs=24.5

Q ss_pred             CCCCCcccccccCCCCCCCcccCCCC
Q psy394           41 VKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        41 ~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ..||++||||++|+|+||||||+|||
T Consensus         5 ~~lP~~~Dwr~~~~v~pVkdQg~cGs   30 (224)
T 3f75_A            5 SELPAGVDWRSRGCVTPVKDQRDCGS   30 (224)
T ss_dssp             GGSCSCEEHHHHTCCCCCCBCCSSSC
T ss_pred             cCCCCceecccCCCCCCCccCCCCcc
Confidence            36899999999999999999999997

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=99.29  E-value=5.7e-13  Score=79.15  Aligned_cols=24  Identities=50%  Similarity=1.095  Sum_probs=23.1

Q ss_pred             CCCcccccccC-CCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKG-AVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g-~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++| +||||||||.|||
T Consensus         1 lP~~~DwR~~~~~vtpVkdQg~cGs   25 (220)
T 8pch_A            1 YPPSMDWRKKGNFVSPVKNQGSCGS   25 (220)
T ss_dssp             CCSCEEHHHHSSCSCCCCBCTTSCC
T ss_pred             CCCCEecCcCCCcCCcccccCCCch
Confidence            69999999999 8999999999997

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=99.21  E-value=1.6e-12  Score=78.76  Aligned_cols=25  Identities=32%  Similarity=0.662  Sum_probs=23.6

Q ss_pred             CCCCccccccc----CCCCCCCcccCCCC
Q psy394           42 KLPEEVDWRNK----GAVTPIKDQGQCYK   66 (66)
Q Consensus        42 ~~P~~~DWR~~----g~Vt~Vk~Qg~CGS   66 (66)
                      +||++||||++    |+||||||||+|||
T Consensus         2 ~lP~s~D~R~~~~~~~~vtpVkdQg~CGS   30 (254)
T 3qsd_A            2 EIPSSFDSRKKWPRCKSIATIRDQSRCGS   30 (254)
T ss_dssp             CCCSCEEHHHHCTTCGGGGCCCBCCSSBC
T ss_pred             CCCCcCccccccCCCCccCCCCCcccCcc
Confidence            58999999999    68999999999997

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=99.17  E-value=4.2e-12  Score=77.38  Aligned_cols=26  Identities=38%  Similarity=0.709  Sum_probs=24.2

Q ss_pred             CCCCCccccccc----CCCCCCCcccCCCC
Q psy394           41 VKLPEEVDWRNK----GAVTPIKDQGQCYK   66 (66)
Q Consensus        41 ~~~P~~~DWR~~----g~Vt~Vk~Qg~CGS   66 (66)
                      ..||++||||++    |+|+||||||.|||
T Consensus         5 ~~lP~~~D~R~~w~~~~~vt~VkdQg~CGS   34 (266)
T 3cbj_A            5 LKLPASFDAREQWPQCPTIKEIRDQGSCGS   34 (266)
T ss_dssp             CCCCSCEEHHHHSTTCGGGGCCCBCCSSBC
T ss_pred             CCCCccCcchhccCCCCcCCCCCCCCCcch
Confidence            479999999998    88999999999997

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=99.05  E-value=5.1e-12  Score=77.90  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             CCCCCcccccccCCCCCCCcccCCCC
Q psy394           41 VKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        41 ~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ..||++||||+++   ||||||+|||
T Consensus        55 ~~lP~s~DwR~~~---pVkdQG~CGS   77 (291)
T 3ois_A           55 AALPPKVDLTPPF---QVYDQGRIGS   77 (291)
T ss_dssp             HTCCSEEECCCSS---CCCBCTTSSC
T ss_pred             ccCCcceecccCC---CcccCCCCcc
Confidence            3699999999995   9999999997

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=98.93  E-value=2.8e-10  Score=69.86  Aligned_cols=26  Identities=31%  Similarity=0.583  Sum_probs=23.9

Q ss_pred             CCCCCccccccc---CCCCCCCccc---CCCC
Q psy394           41 VKLPEEVDWRNK---GAVTPIKDQG---QCYK   66 (66)
Q Consensus        41 ~~~P~~~DWR~~---g~Vt~Vk~Qg---~CGS   66 (66)
                      ..||++||||++   |+|+||||||   .|||
T Consensus        34 ~~lP~~~DwR~~~~~~~vtpVkdQg~~~~CGS   65 (277)
T 1deu_A           34 ADLPKSWDWRNVDGVNYASITRNQHIPQYCGS   65 (277)
T ss_dssp             GGSCSCEETTSBTTBCCCCCCCBTTCSSCCBC
T ss_pred             ccCCCceecccCCCCCcCCccccCCCCCCCcc
Confidence            569999999998   6799999999   9997

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=98.64  E-value=7.6e-09  Score=62.77  Aligned_cols=22  Identities=18%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             Cccccccc-CCCC--CCCcccCCCC
Q psy394           45 EEVDWRNK-GAVT--PIKDQGQCYK   66 (66)
Q Consensus        45 ~~~DWR~~-g~Vt--~Vk~Qg~CGS   66 (66)
                      .-.|||++ |+|+  ||||||.|||
T Consensus         9 ~~~dWR~~~~~~~it~VkdQg~CGS   33 (265)
T 2wbf_X            9 YCNRLKDENNCISNLQVEDQGNCDT   33 (265)
T ss_dssp             CBCGGGCTTSTGGGSCCCBCTTSSC
T ss_pred             HHHhhccCCCCCCCCCCcCCCCChh
Confidence            45899999 7988  9999999998

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=97.93  E-value=1.9e-06  Score=56.20  Aligned_cols=25  Identities=12%  Similarity=0.049  Sum_probs=10.8

Q ss_pred             CCCCcccccccCCCCCCCcccCCCC
Q psy394           42 KLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        42 ~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ..+..|+|+..++||||||||+|||
T Consensus        52 ~~~~~F~~~~~~~vtpVknQg~cGs   76 (457)
T 2e01_A           52 QDNRVFNTVVSTDSTPVTNQKSSGR   76 (457)
T ss_dssp             HCCCCCSEECC------------CC
T ss_pred             CCCCceEEEecCCccCcccCCCCcc
Confidence            4677899999999999999999997

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=97.80  E-value=8.7e-06  Score=53.13  Aligned_cols=25  Identities=12%  Similarity=0.094  Sum_probs=22.7

Q ss_pred             CCCCcccccccCCCCCCCcccCCCC
Q psy394           42 KLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        42 ~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ..+..|+++...+||||||||+|||
T Consensus        47 ~~~~~F~~~~~~~~tpVknQg~cGs   71 (453)
T 2cb5_A           47 RAQHVFQHAVPQEGKPITNQKSSGR   71 (453)
T ss_dssp             HCCCCCSEECSCCCSSCCBCCBSSC
T ss_pred             cCCCceeeeeccCCCCcccCCCccc
Confidence            4677899999999999999999997

>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}

Probab=97.17  E-value=0.00019  Score=38.55  Aligned_cols=19  Identities=26%  Similarity=0.280  Sum_probs=16.5

Q ss_pred             CCcCCCHHHHHHHHcCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKR   19 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~   19 (66)
                      .|||||.+||.++|+|.+.
T Consensus        72 ~FaDLT~eEF~~~~lg~~~   90 (106)
T 3f75_P           72 HFGDLSRDEFRRKYLGFKK   90 (106)
T ss_dssp             TTTTCCHHHHHHHSCCBCC
T ss_pred             ccccCCHHHHHHHHcCCCC
Confidence            4999999999999988654

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=97.05  E-value=0.00019  Score=46.08  Aligned_cols=14  Identities=21%  Similarity=0.392  Sum_probs=12.5

Q ss_pred             CCCCCCCcccCCCC
Q psy394           53 GAVTPIKDQGQCYK   66 (66)
Q Consensus        53 g~Vt~Vk~Qg~CGS   66 (66)
                      -.||||||||+|||
T Consensus        20 ~~vtpVknQg~cGs   33 (383)
T 3pw3_A           20 NPITSVKNQNRAGT   33 (383)
T ss_dssp             CCCCCCCBCCBSSC
T ss_pred             cCCCCcccCCCCcH
Confidence            46899999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	66
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	6e-10
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	9e-10
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	9e-10
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	1e-09
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	1e-09
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	1e-09
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	1e-09
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	1e-09
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	2e-09
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	3e-09
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	3e-09
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	4e-09
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	6e-09
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	2e-08
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	3e-08
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	7e-08
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	2e-07
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	5e-06
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	8e-06
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	2e-04

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 50.0 bits (118), Expect = 6e-10
 Identities = 16/22 (72%), Positives = 20/22 (90%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE++DWR KGAVTP+K+QG C
Sbjct: 1  LPEQIDWRKKGAVTPVKNQGSC 22

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 49.6 bits (117), Expect = 9e-10
 Identities = 15/22 (68%), Positives = 17/22 (77%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP  VDWR+KGAV  IK+Q QC
Sbjct: 1  LPSFVDWRSKGAVNSIKNQKQC 22

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 9e-10
 Identities = 14/22 (63%), Positives = 16/22 (72%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP+ VDWR KG VT +K QG C
Sbjct: 1  LPDSVDWREKGCVTEVKYQGSC 22

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 49.6 bits (117), Expect = 1e-09
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LPE VDWR KGAVTP++ QG C
Sbjct: 1  LPENVDWRKKGAVTPVRHQGSC 22

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 49.2 bits (116), Expect = 1e-09
 Identities = 13/22 (59%), Positives = 17/22 (77%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP+ +DWR  GAV P+K+QG C
Sbjct: 1  LPDSIDWRENGAVVPVKNQGGC 22

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 1e-09
 Identities = 15/22 (68%), Positives = 18/22 (81%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP+ VDWR KG VTP+K+Q QC
Sbjct: 1  LPKSVDWRKKGYVTPVKNQKQC 22

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 49.2 bits (116), Expect = 1e-09
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +P  VDWR KGAVT +KDQGQC
Sbjct: 2  VPASVDWRKKGAVTSVKDQGQC 23

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 49.2 bits (116), Expect = 1e-09
 Identities = 14/22 (63%), Positives = 16/22 (72%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          LP  VDWR+ GAV  IK QG+C
Sbjct: 1  LPSYVDWRSAGAVVDIKSQGEC 22

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 48.9 bits (115), Expect = 2e-09
 Identities = 16/22 (72%), Positives = 19/22 (86%)

Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
          +PE VDWR KGAVTP+K+QG C
Sbjct: 1  IPEYVDWRQKGAVTPVKNQGSC 22

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-09
 Identities = 15/21 (71%), Positives = 17/21 (80%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P E DWR+KGAVT +KDQG C
Sbjct: 2  PPEWDWRSKGAVTKVKDQGMC 22

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 48.0 bits (113), Expect = 3e-09
 Identities = 14/21 (66%), Positives = 18/21 (85%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P+ +DWR KGAVTP+K+QG C
Sbjct: 2  PQSIDWRAKGAVTPVKNQGAC 22

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 4e-09
 Identities = 14/21 (66%), Positives = 18/21 (85%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P+ VD+R KG VTP+K+QGQC
Sbjct: 2  PDSVDYRKKGYVTPVKNQGQC 22

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 47.3 bits (111), Expect = 6e-09
 Identities = 15/21 (71%), Positives = 17/21 (80%)

Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
          P  VDWR +GAVT +KDQGQC
Sbjct: 2  PAAVDWRARGAVTAVKDQGQC 22

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 46.1 bits (108), Expect = 2e-08
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 35 YIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
          Y   +N       DWR    VTP+KDQ  C
Sbjct: 11 YRGEENFD-HAAYDWRLHSGVTPVKDQKNC 39

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 7e-08
 Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 4/27 (14%)

Query: 42 KLPEEVDWR----NKGAVTPIKDQGQC 64
          KLP   D R        +  I+DQG C
Sbjct: 1  KLPASFDAREQWPQCPTIKEIRDQGSC 27

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 39.3 bits (90), Expect = 5e-06
 Identities = 17/59 (28%), Positives = 22/59 (37%)

Query: 7   HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCY 65
             EF +       +   L T+      T     N   P E+D R    VTPI+ QG C 
Sbjct: 51  LDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCG 109

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 8e-06
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 19 RSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAV---TPIKDQGQ 63
               LG         Y++P +  LP+  DWRN   V   +  ++Q  
Sbjct: 12 DGLAPLGRTTYPRPHEYLSPAD--LPKSWDWRNVDGVNYASITRNQHI 57

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 7   HHEFVHMMN-GFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
            + F  M +  F++        +  +G  +  P   + P  VDWR KG VTP+K+QGQC
Sbjct: 60  MNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQC 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	99.79
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	99.79
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	99.4
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	99.39
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	99.37
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	99.37
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	99.36
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	99.36
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	99.36
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	99.36
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	99.34
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	99.34
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	99.33
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	99.32
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	99.32
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	99.29
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	99.25
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	99.25
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	99.14
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	98.86

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=99.79  E-value=1.2e-20  Score=115.27  Aligned_cols=66  Identities=26%  Similarity=0.209  Sum_probs=42.9

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeCCCCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||..+++..........................++|++||||++|+||||||||.|||
T Consensus        45 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DwR~~g~vtpVkdQG~CGs  110 (302)
T d1xkga1          45 HLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGS  110 (302)
T ss_dssp             TTTTSCHHHHHHHHSBCHHHHHHHHHHHC-----CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBC
T ss_pred             cCCCCCHHHHHHHhcCCCcccccccccCCCCccccccccCCCCCcceeccccCccccceeccccce
Confidence            499999999999886543221100000000111112233467999999999999999999999997

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.4e-20  Score=111.87  Aligned_cols=59  Identities=39%  Similarity=0.680  Sum_probs=44.3

Q ss_pred             CCcCCCHHHHHHHHcCCCCCcccccccccccceeeeCCCCCCCCCcccccccCCCCCCCcccCCCC
Q psy394            1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus         1 ~fsDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|+|||.+||.+++++......       ............+||++||||++|+|+||||||.|||
T Consensus        62 ~fsDlt~eEf~~~~~~~~~~~~-------~~~~~~~~~~~~~lP~s~Dwr~~g~vtpVkdQG~CGs  120 (316)
T d1cs8a_          62 AFGDMTSEEFRQVMNGFQNRKP-------RKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGS  120 (316)
T ss_dssp             TTTTCCHHHHHHHHCCBCCCCC-------SCCEECCCCTTCCCCSCEEGGGGTCCCCCCBCCSSSC
T ss_pred             eccccCcHHHHhhhcccccccc-------ccCccccCcccccCCCceECCcCCcccccccCCCCce
Confidence            5999999999998866433221       1112222334568999999999999999999999997

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.6e-14  Score=81.96  Aligned_cols=24  Identities=63%  Similarity=1.142  Sum_probs=23.3

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+||||||||.|||
T Consensus         1 LP~~~DwR~~~~vtpV~dQG~cGs   24 (221)
T d1fh0a_           1 LPKSVDWRKKGYVTPVKNQKQCGS   24 (221)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSCC
T ss_pred             CCCCeeCCcCCCCCCCccCCCCch
Confidence            799999999999999999999997

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.39  E-value=4.9e-14  Score=80.85  Aligned_cols=24  Identities=67%  Similarity=1.252  Sum_probs=23.3

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||.|||
T Consensus         1 LP~~~D~R~~~~v~pV~dQg~cGs   24 (212)
T d1khqa_           1 IPEYVDWRQKGAVTPVKNQGSCGS   24 (212)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBC
T ss_pred             CCCCeeCCCCCCCCCcccCCcCch
Confidence            799999999999999999999997

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.37  E-value=7.1e-14  Score=80.71  Aligned_cols=24  Identities=67%  Similarity=1.288  Sum_probs=23.3

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|.|+||||||.|||
T Consensus         1 LP~~~Dwr~~~~vtpV~dQg~cGs   24 (216)
T d1ppoa_           1 LPENVDWRKKGAVTPVRHQGSCGS   24 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBC
T ss_pred             CCCcccCCcCCCCCCcccCCcCch
Confidence            799999999999999999999997

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=99.37  E-value=8.1e-14  Score=80.29  Aligned_cols=24  Identities=54%  Similarity=1.211  Sum_probs=23.3

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+||||||||.|||
T Consensus         1 LP~~~DwR~~~~itpV~dQg~cgs   24 (216)
T d1cqda_           1 LPDSIDWRENGAVVPVKNQGGCGS   24 (216)
T ss_dssp             CCSCEETTTTTCCCCCCBCTTSBC
T ss_pred             CCCcccCCcCCCCCCcccCCCCch
Confidence            799999999999999999999997

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=99.36  E-value=9.3e-14  Score=80.42  Aligned_cols=25  Identities=64%  Similarity=1.153  Sum_probs=23.8

Q ss_pred             CCCCcccccccCCCCCCCcccCCCC
Q psy394           42 KLPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        42 ~~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .||++||||++|.||||||||.|||
T Consensus         1 ~lP~~~Dwr~~~~itpV~dQG~cGs   25 (224)
T d1s4va_           1 TVPASVDWRKKGAVTSVKDQGQCGS   25 (224)
T ss_dssp             CCCSCEETTTTTCCCCCCBCCSSBC
T ss_pred             CCCCceeCCCCCCCCCCccCCcCch
Confidence            4899999999999999999999997

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.1e-14  Score=80.13  Aligned_cols=24  Identities=58%  Similarity=1.085  Sum_probs=23.3

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++++||||||||.|||
T Consensus         1 LP~~~Dwr~~~~vtpV~dQG~cGs   24 (217)
T d2h7ja1           1 LPDSVDWREKGCVTEVKYQGSCGA   24 (217)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBC
T ss_pred             CCCcccCCcCCCCCCCccCCCchH
Confidence            799999999999999999999997

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=99.36  E-value=9.4e-14  Score=80.20  Aligned_cols=24  Identities=58%  Similarity=1.019  Sum_probs=23.3

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+|+||||||.|||
T Consensus         1 LP~~~Dwr~~~~itpV~dQg~cGs   24 (218)
T d1aeca_           1 LPSYVDWRSAGAVVDIKSQGECGG   24 (218)
T ss_dssp             CCSCEEGGGGTCCCCCCBCTTSBC
T ss_pred             CCCceeCCCCCCCCCCccCCCChh
Confidence            799999999999999999999997

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=99.36  E-value=1e-13  Score=79.56  Aligned_cols=24  Identities=67%  Similarity=1.327  Sum_probs=23.3

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++|+||||||||.|||
T Consensus         1 LP~~~D~R~~~~vtpV~dQg~cGs   24 (208)
T d1o0ea_           1 LPEQIDWRKKGAVTPVKNQGSCGS   24 (208)
T ss_dssp             CCSCEEGGGGTCCCCCCBCCSSBC
T ss_pred             CCCcccCccCCCCCCcccCCCCcc
Confidence            799999999999999999999997

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=99.34  E-value=1.6e-13  Score=79.14  Aligned_cols=24  Identities=63%  Similarity=1.021  Sum_probs=23.3

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      ||++||||++++|+||||||.|||
T Consensus         1 LP~s~Dwr~~~~v~pV~dQg~cGs   24 (215)
T d1iwda_           1 LPSFVDWRSKGAVNSIKNQKQCGS   24 (215)
T ss_dssp             CCSCEEGGGGTCSCCCCBCCSSBC
T ss_pred             CCCceeCCcCCCCCCCccCCCCch
Confidence            799999999999999999999997

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.33  E-value=1.8e-13  Score=79.15  Aligned_cols=24  Identities=58%  Similarity=1.204  Sum_probs=22.9

Q ss_pred             CCCcccccccCCCCCCCcccCCCC
Q psy394           43 LPEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        43 ~P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      .|++||||++|+||||||||.|||
T Consensus         1 ~P~~~DwR~~~~vtpV~dQg~cGs   24 (218)
T d1yala_           1 YPQSIDWRAKGAVTPVKNQGACGS   24 (218)
T ss_dssp             CCSCEETTTTTCCCCCCBCCSSBC
T ss_pred             CCCCEeCCCCCCCCCCccCCCCch
Confidence            499999999999999999999997

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.32  E-value=2e-13  Score=78.76  Aligned_cols=23  Identities=65%  Similarity=1.199  Sum_probs=22.4

Q ss_pred             CCcccccccCCCCCCCcccCCCC
Q psy394           44 PEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        44 P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      |++||||++|+|+||||||.|||
T Consensus         2 P~~~DwR~~~~vtpV~dQg~cGs   24 (215)
T d1me4a_           2 PAAVDWRARGAVTAVKDQGQCGS   24 (215)
T ss_dssp             CSEEEGGGTTCCCCCCBCTTSSC
T ss_pred             CCCeeCCCCCCCCCCccCCcCcc
Confidence            89999999999999999999997

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.4e-13  Score=78.51  Aligned_cols=23  Identities=61%  Similarity=1.121  Sum_probs=22.4

Q ss_pred             CCcccccccCCCCCCCcccCCCC
Q psy394           44 PEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        44 P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      |++||||++|+||||||||.|||
T Consensus         2 P~~~DwR~~~~vtpV~dQG~cGs   24 (215)
T d2r6na1           2 PDSVDYRKKGYVTPVKNQGQCGS   24 (215)
T ss_dssp             CSCEETTTTTCCCCCCBCTTSCC
T ss_pred             CCCEeCccCCCCCCCccCccChh
Confidence            89999999999999999999997

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4e-13  Score=77.50  Aligned_cols=23  Identities=65%  Similarity=1.115  Sum_probs=22.4

Q ss_pred             CCcccccccCCCCCCCcccCCCC
Q psy394           44 PEEVDWRNKGAVTPIKDQGQCYK   66 (66)
Q Consensus        44 P~~~DWR~~g~Vt~Vk~Qg~CGS   66 (66)
                      |++||||++|+||||||||.|||
T Consensus         2 P~~~D~R~~~~vtpV~dQg~cGs   24 (214)
T d1m6da_           2 PPEWDWRSKGAVTKVKDQGMCGS   24 (214)
T ss_dssp             CSCEEGGGGTCCCCCCBCCSSBC
T ss_pred             CCceeCCCCCCCCCCccCCcCcc
Confidence            89999999999999999999997

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.6e-12  Score=75.41  Aligned_cols=25  Identities=40%  Similarity=0.656  Sum_probs=22.6

Q ss_pred             CCCCcccccc----cCCCCCCCcccCCCC
Q psy394           42 KLPEEVDWRN----KGAVTPIKDQGQCYK   66 (66)
Q Consensus        42 ~~P~~~DWR~----~g~Vt~Vk~Qg~CGS   66 (66)
                      .||++||||+    .|+||||||||.|||
T Consensus         1 ~lP~~~D~R~~w~~~~~vtpV~dQg~cGs   29 (254)
T d1gmya_           1 KLPASFDAREQWPQCPTIKEIRDQGSCGS   29 (254)
T ss_dssp             CCCSSEEHHHHSTTCGGGGCCCBCCSSCC
T ss_pred             CCCcCCcchhhcCCCCCCCCCCCCCCChh
Confidence            4899999777    599999999999997

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.1e-10  Score=67.32  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=22.7

Q ss_pred             CCCCCcccccccCC---CCCCCccc---CCCC
Q psy394           41 VKLPEEVDWRNKGA---VTPIKDQG---QCYK   66 (66)
Q Consensus        41 ~~~P~~~DWR~~g~---Vt~Vk~Qg---~CGS   66 (66)
                      .+||++||||++|.   ++||||||   .|||
T Consensus        32 ~~LP~~~DwR~~~~~~~~tpvkdQG~~~~CGs   63 (275)
T d1deua_          32 ADLPKSWDWRNVDGVNYASITRNQHIPQYCGS   63 (275)
T ss_dssp             GGSCSCEETTSBTTBCCCCCCCBTTCSSCCBC
T ss_pred             ccCCCccccCcCCCcCCCCCcccCCCCCCCcC
Confidence            47999999999964   59999998   6997