Psyllid ID: psy3964

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
MRKGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEccccccccEEEEEcccccccccccEEEEEEccccEEEccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEEEEEccEEEEEEEccEcccccEccEEEEEccccccccccccEEccc
Coil and Loop (DISEMBL)
mrkghnspdglDHAVLAVGygeldgkpywqvknswstywgnqgYVLMSikdnncgvmtaptyvtm
Flexible Loop (DISEMBL)
mrkghnspdgldHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Low Complexity Region (SEG)
MRKGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Disordered region (IsUnstruct)
***********DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY***
Disordered Region (DISOPRED)
******S**GLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Disordered Region (DISEMBL)
********DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Disordered Region (DISPRO)
*******PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRKGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	65	2.2.26 [Sep-21-2011]
P25784	321	Digestive cysteine protei	N/A	N/A	0.907	0.183	0.566	7e-13
Q10717	360	Cysteine proteinase 2 OS=	N/A	N/A	0.861	0.155	0.535	1e-12
P25782	323	Digestive cysteine protei	N/A	N/A	0.861	0.173	0.578	2e-12
Q01958	315	Histolysain OS=Entamoeba	N/A	N/A	0.953	0.196	0.532	3e-12
Q06964	308	Cysteine proteinase 3 (Fr	N/A	N/A	0.953	0.201	0.532	4e-12
P00786	333	Pro-cathepsin H OS=Rattus	yes	N/A	0.892	0.174	0.534	5e-12
P09668	335	Pro-cathepsin H OS=Homo s	yes	N/A	0.892	0.173	0.534	6e-12
O46427	335	Pro-cathepsin H OS=Sus sc	yes	N/A	0.892	0.173	0.534	6e-12
Q40143	356	Cysteine proteinase 3 OS=	N/A	N/A	0.876	0.160	0.508	7e-12
Q01957	315	Cysteine proteinase 1 OS=	N/A	N/A	0.846	0.174	0.563	8e-12

>sp|P25784|CYSP3_HOMAM Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
           SP  LDH VLAVGYG    K YW VKNSW + WG+ GY+ MS  +DNNCG+ + P+Y T+
Sbjct: 262 SPTFLDHGVLAVGYGTESTKDYWLVKNSWGSSWGDAGYIKMSRNRDNNCGIASEPSYPTV 321

Homarus americanus (taxid: 6706)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|Q10717|CYSP2_MAIZE Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 38/56 (67%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           +P  ++HAVLAVGYG  DG PYW +KNSW   WG++GY  M +  N CGV T  +Y
Sbjct: 301 TPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMGKNMCGVATCASY 356

Involved in the degradation of the storage protein zein. May play a role in proteolysis during emergencies.

Zea mays (taxid: 4577)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           SP  LDHAVLAVGYG   G+ +W VKNSW+T WG+ GY+ MS  ++NNCG+ T  +Y
Sbjct: 264 SPSYLDHAVLAVGYGSEGGQDFWLVKNSWATSWGDAGYIKMSRNRNNNCGIATVASY 320

Homarus americanus (taxid: 6706)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q01958|CPP2_ENTHI Histolysain OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 41/62 (66%)

Query: 3   KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           K  N+   L+H V AVGYG +DGK  W V+NSW T WG++GY+ M I+ N CGV T P Y
Sbjct: 249 KCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGDKGYINMVIEGNTCGVATDPLY 308

Query: 63  VT 64
            T
Sbjct: 309 PT 310

Involved in the destruction of human tissue by E.histolytica. Can abolish adhesion and degrade matrix proteins such as collagen, laminin and fibronectin. May play an important role in pathogenicity.

Entamoeba histolytica (taxid: 5759)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q06964|CPP3_ENTHI Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 41/62 (66%)

Query: 3   KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           K  N+   L+H V AVGYG +DGK  W V+NSW T WG++GY+ M I+ N CGV T P Y
Sbjct: 242 KCKNNFFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGDKGYINMVIEGNTCGVATDPLY 301

Query: 63  VT 64
            T
Sbjct: 302 PT 303

Can abolish adhesion and degrade matrix proteins such as collagen, laminin and fibronectin.

Entamoeba histolytica (taxid: 5759)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P00786|CATH_RAT Pro-cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 39/58 (67%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           H +PD ++HAVLAVGYGE +G  YW VKNSW + WGN GY L+    N CG+    +Y
Sbjct: 271 HKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSNWGNNGYFLIERGKNMCGLAACASY 328

Important for the overall degradation of proteins in lysosomes.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 6

>sp|P09668|CATH_HUMAN Pro-cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4

 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 38/58 (65%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           H +PD ++HAVLAVGYGE +G PYW VKNSW   WG  GY L+    N CG+    +Y
Sbjct: 273 HKTPDKVNHAVLAVGYGEKNGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 330

Important for the overall degradation of proteins in lysosomes.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 6

>sp|O46427|CATH_PIG Pro-cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 38/58 (65%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           H +PD ++HAVLAVGYGE +G PYW VKNSW   WG  GY L+    N CG+    +Y
Sbjct: 273 HKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 330

Important for the overall degradation of proteins in lysosomes.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 6

>sp|Q40143|CYSP3_SOLLC Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 6   NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           ++P  ++HAVLAVGYG  +G PYW +KNSW   WG  GY  M +  N CGV T  +Y
Sbjct: 296 DTPMDVNHAVLAVGYGVENGTPYWLIKNSWGADWGEDGYFKMEMGKNMCGVATCASY 352

Solanum lycopersicum (taxid: 4081)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q01957|CPP1_ENTHI Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 37/55 (67%)

Query: 10  GLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 64
            L+H V AVGYG +DGK  W V+NSW T WG +GY+ M I+ N CGV T P Y T
Sbjct: 256 ALNHEVCAVGYGVVDGKECWIVRNSWGTGWGEKGYINMVIEGNTCGVATDPLYPT 310

Involved in the destruction of human tissue by E.histolytica. Can abolish adhesion and degrade matrix proteins such as collagen, laminin and fibronectin. May play an important role in pathogenicity.

Entamoeba histolytica (taxid: 5759)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
332374780	544	unknown [Dendroctonus ponderosae]	0.984	0.117	0.734	6e-20
432881828	563	PREDICTED: counting factor associated pr	0.923	0.106	0.75	7e-20
348542138	551	PREDICTED: counting factor associated pr	0.923	0.108	0.75	9e-20
383860620	549	PREDICTED: counting factor associated pr	0.923	0.109	0.75	2e-19
194870649	549	GG15663 [Drosophila erecta] gi|190654476	0.923	0.109	0.766	2e-19
195590156	549	GD14469 [Drosophila simulans] gi|1941968	0.923	0.109	0.766	2e-19
20428641	549	26-29kD-proteinase [Drosophila melanogas	0.923	0.109	0.766	2e-19
195327474	549	GM25442 [Drosophila sechellia] gi|194119	0.923	0.109	0.766	2e-19
195494228	549	GE21992 [Drosophila yakuba] gi|194180848	0.923	0.109	0.766	2e-19
350425511	549	PREDICTED: counting factor associated pr	0.923	0.109	0.75	2e-19

>gi|332374780|gb|AEE62531.1| unknown [Dendroctonus ponderosae]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 52/64 (81%)

Query: 2   RKGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPT 61
            K HN  D LDHAVLAVGYG ++G  YW VKNSWS YWGN GYVLMS K+NNCGVM+APT
Sbjct: 480 EKCHNKVDELDHAVLAVGYGSINGNHYWLVKNSWSNYWGNDGYVLMSSKNNNCGVMSAPT 539

Query: 62  YVTM 65
           YVT+
Sbjct: 540 YVTL 543

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432881828|ref|XP_004073923.1| PREDICTED: counting factor associated protein D-like [Oryzias latipes]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 52/60 (86%)

Query: 6   NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
           N+ D LDHAVLAVGYG L+G+PYW +KNSWSTYWGN GY+LMS+KDNNCGV T  TYVT+
Sbjct: 503 NTTDDLDHAVLAVGYGTLNGEPYWLIKNSWSTYWGNDGYILMSMKDNNCGVTTDATYVTL 562

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348542138|ref|XP_003458543.1| PREDICTED: counting factor associated protein D-like [Oreochromis niloticus]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 51/60 (85%)

Query: 6   NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
           N+ D LDHAVLAVGYG L G+PYW +KNSWSTYWGN GY+LMS+KDNNCGV T  TYVT+
Sbjct: 491 NTVDDLDHAVLAVGYGTLSGEPYWLIKNSWSTYWGNDGYILMSMKDNNCGVATDATYVTL 550

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383860620|ref|XP_003705787.1| PREDICTED: counting factor associated protein D-like [Megachile rotundata]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 52/60 (86%)

Query: 6   NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
           N+ + LDHAVLAVGYG+L+GK YW VKNSWS YWGN GY+LMS + NNCGV+TAPTYVTM
Sbjct: 490 NTEESLDHAVLAVGYGKLNGKDYWLVKNSWSNYWGNDGYILMSQEKNNCGVLTAPTYVTM 549

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194870649|ref|XP_001972693.1| GG15663 [Drosophila erecta] gi|190654476|gb|EDV51719.1| GG15663 [Drosophila erecta]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 50/60 (83%)

Query: 6   NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
           N  DGLDHAVLAVGYG ++G+ YW VKNSWSTYWGN GY+LMS K NNCGVMT PTYV M
Sbjct: 490 NDVDGLDHAVLAVGYGSINGEDYWLVKNSWSTYWGNDGYILMSAKKNNCGVMTMPTYVEM 549

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195590156|ref|XP_002084812.1| GD14469 [Drosophila simulans] gi|194196821|gb|EDX10397.1| GD14469 [Drosophila simulans]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 50/60 (83%)

Query: 6   NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
           N  DGLDHAVLAVGYG ++G+ YW VKNSWSTYWGN GY+LMS K NNCGVMT PTYV M
Sbjct: 490 NDVDGLDHAVLAVGYGSINGEDYWLVKNSWSTYWGNDGYILMSAKKNNCGVMTMPTYVEM 549

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20428641|ref|NP_620470.1| 26-29kD-proteinase [Drosophila melanogaster] gi|6448467|dbj|BAA86910.1| homologue of Sarcophaga 26,29kDa proteinase [Drosophila melanogaster] gi|7294432|gb|AAF49777.1| 26-29kD-proteinase [Drosophila melanogaster] gi|21483518|gb|AAM52734.1| RE18380p [Drosophila melanogaster]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 50/60 (83%)

Query: 6   NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
           N  DGLDHAVLAVGYG ++G+ YW VKNSWSTYWGN GY+LMS K NNCGVMT PTYV M
Sbjct: 490 NDVDGLDHAVLAVGYGSINGEDYWLVKNSWSTYWGNDGYILMSAKKNNCGVMTMPTYVEM 549

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195327474|ref|XP_002030443.1| GM25442 [Drosophila sechellia] gi|194119386|gb|EDW41429.1| GM25442 [Drosophila sechellia]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 50/60 (83%)

Query: 6   NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
           N  DGLDHAVLAVGYG ++G+ YW VKNSWSTYWGN GY+LMS K NNCGVMT PTYV M
Sbjct: 490 NDVDGLDHAVLAVGYGSINGEDYWLVKNSWSTYWGNDGYILMSAKKNNCGVMTMPTYVEM 549

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195494228|ref|XP_002094747.1| GE21992 [Drosophila yakuba] gi|194180848|gb|EDW94459.1| GE21992 [Drosophila yakuba]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 50/60 (83%)

Query: 6   NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
           N  DGLDHAVLAVGYG ++G+ YW VKNSWSTYWGN GY+LMS K NNCGVMT PTYV M
Sbjct: 490 NDVDGLDHAVLAVGYGSINGEDYWLVKNSWSTYWGNDGYILMSAKKNNCGVMTMPTYVEM 549

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425511|ref|XP_003494144.1| PREDICTED: counting factor associated protein D-like [Bombus impatiens]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 51/60 (85%)

Query: 6   NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
           N+ + LDHAVLAVGYG L+GK YW VKNSWS YWGN GY+LMS + NNCGV+TAPTYVTM
Sbjct: 490 NTEESLDHAVLAVGYGSLNGKDYWLVKNSWSNYWGNDGYILMSQEKNNCGVLTAPTYVTM 549

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
FB|FBgn0250848	549	26-29-p "26-29kD-proteinase" [	0.923	0.109	0.766	2.7e-22
UNIPROTKB|F1NT07	317	LOC100857883 "Uncharacterized	0.876	0.179	0.719	1.7e-20
UNIPROTKB|F1NHB8	329	F1NHB8 "Uncharacterized protei	0.876	0.173	0.701	9.2e-20
ZFIN|ZDB-GENE-050417-107	546	zgc:110239 "zgc:110239" [Danio	0.923	0.109	0.65	4.6e-18
UNIPROTKB|E2QV47	136	CTSH "Uncharacterized protein"	0.892	0.426	0.551	3.8e-14
UNIPROTKB|F1P3U9	261	CTSH "Uncharacterized protein"	0.876	0.218	0.543	6.2e-14
UNIPROTKB|F6X9C1	305	CTSH "Uncharacterized protein"	0.892	0.190	0.551	6.6e-14
UNIPROTKB|G3SSC1	335	CTSH "Uncharacterized protein"	0.892	0.173	0.551	7.7e-14
UNIPROTKB|F7BJD8	305	CTSH "Uncharacterized protein"	0.892	0.190	0.534	1.1e-13
ZFIN|ZDB-GENE-040718-61	334	ctsl.1 "cathepsin L.1" [Danio	0.892	0.173	0.571	1.3e-13

FB|FBgn0250848 26-29-p "26-29kD-proteinase" [Drosophila melanogaster (taxid:7227)]

 Score = 266 (98.7 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 46/60 (76%), Positives = 50/60 (83%)

Query:     6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
             N  DGLDHAVLAVGYG ++G+ YW VKNSWSTYWGN GY+LMS K NNCGVMT PTYV M
Sbjct:   490 NDVDGLDHAVLAVGYGSINGEDYWLVKNSWSTYWGNDGYILMSAKKNNCGVMTMPTYVEM 549

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|F1NT07 LOC100857883 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 41/57 (71%), Positives = 46/57 (80%)

Query:     6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
             N P  LDHAVLAVGYG L G+ YW +KNSWSTYWGN GY+LM++KDNNCGV T  TY
Sbjct:   257 NKPGQLDHAVLAVGYGVLQGETYWLIKNSWSTYWGNDGYILMAMKDNNCGVATEATY 313

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1NHB8 F1NHB8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 40/57 (70%), Positives = 46/57 (80%)

Query:     6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
             N    LDHAVLAVGYG L GK YW +KNSWSTYWGN GY+LM++KDNNCGV TA ++
Sbjct:   269 NETSELDHAVLAVGYGVLHGKSYWLIKNSWSTYWGNDGYILMAMKDNNCGVATAASF 325

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

ZFIN|ZDB-GENE-050417-107 zgc:110239 "zgc:110239" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 39/60 (65%), Positives = 47/60 (78%)

Query:     6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
             N  + LDHAVLAVGYG ++ + YW VKNSWS+YWGN GY+LMS+KDNNCGV T   Y T+
Sbjct:   486 NGINDLDHAVLAVGYGIMNNESYWLVKNSWSSYWGNDGYILMSMKDNNCGVATDAIYATL 545

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E2QV47 CTSH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 32/58 (55%), Positives = 38/58 (65%)

Query:     5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
             H +PD ++HAVLAVGYGE +G PYW VKNSW   WG  GY LM    N CG+    +Y
Sbjct:    74 HKTPDKVNHAVLAVGYGEQNGIPYWIVKNSWGPQWGMNGYFLMERGKNMCGLAACASY 131

GO:0097208 "alveolar lamellar body" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=IEA

GO:0060448 "dichotomous subdivision of terminal units involved in lung branching" evidence=IEA

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

GO:0043129 "surfactant homeostasis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0031648 "protein destabilization" evidence=IEA

GO:0031638 "zymogen activation" evidence=IEA

GO:0030108 "HLA-A specific activating MHC class I receptor activity" evidence=IEA

GO:0016505 "apoptotic protease activator activity" evidence=IEA

GO:0010815 "bradykinin catabolic process" evidence=IEA

GO:0010813 "neuropeptide catabolic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0002764 "immune response-regulating signaling pathway" evidence=IEA

GO:0001913 "T cell mediated cytotoxicity" evidence=IEA

UNIPROTKB|F1P3U9 CTSH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query:     6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
             ++PD ++HAVLAVGYGE DG+PYW VKNSW   WG  GY L+    N CG+    +Y
Sbjct:   200 HTPDKVNHAVLAVGYGEEDGRPYWIVKNSWGPLWGMDGYFLIERGKNMCGLAACASY 256

GO:0001913 "T cell mediated cytotoxicity" evidence=IEA

GO:0002764 "immune response-regulating signaling pathway" evidence=IEA

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010813 "neuropeptide catabolic process" evidence=IEA

GO:0010815 "bradykinin catabolic process" evidence=IEA

GO:0016505 "apoptotic protease activator activity" evidence=IEA

GO:0030108 "HLA-A specific activating MHC class I receptor activity" evidence=IEA

GO:0031638 "zymogen activation" evidence=IEA

GO:0031648 "protein destabilization" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043129 "surfactant homeostasis" evidence=IEA

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

GO:0060448 "dichotomous subdivision of terminal units involved in lung branching" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=IEA

GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0097208 "alveolar lamellar body" evidence=IEA

UNIPROTKB|F6X9C1 CTSH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 6.6e-14, P = 6.6e-14
 Identities = 32/58 (55%), Positives = 38/58 (65%)

Query:     5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
             H +PD ++HAVLAVGYGE +G PYW VKNSW   WG  GY LM    N CG+    +Y
Sbjct:   243 HKTPDKVNHAVLAVGYGEQNGIPYWIVKNSWGPQWGMNGYFLMERGKNMCGLAACASY 300

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|G3SSC1 CTSH "Uncharacterized protein" [Loxodonta africana (taxid:9785)]

 Score = 183 (69.5 bits), Expect = 7.7e-14, P = 7.7e-14
 Identities = 32/58 (55%), Positives = 38/58 (65%)

Query:     5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
             H +PD ++HAVLAVGYGE  G PYW VKNSW  YWG  GY L+    N CG+    +Y
Sbjct:   273 HKTPDKVNHAVLAVGYGEEKGIPYWIVKNSWGPYWGMDGYFLIERGKNMCGLAACASY 330

GO:0001656 "metanephros development" evidence=ISS

GO:0001913 "T cell mediated cytotoxicity" evidence=ISS

GO:0002764 "immune response-regulating signaling pathway" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0004177 "aminopeptidase activity" evidence=ISS

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005615 "extracellular space" evidence=ISS

GO:0005764 "lysosome" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0010634 "positive regulation of epithelial cell migration" evidence=ISS

GO:0010813 "neuropeptide catabolic process" evidence=ISS

GO:0010815 "bradykinin catabolic process" evidence=ISS

GO:0010952 "positive regulation of peptidase activity" evidence=ISS

GO:0016505 "apoptotic protease activator activity" evidence=ISS

GO:0030108 "HLA-A specific activating MHC class I receptor activity" evidence=ISS

GO:0030335 "positive regulation of cell migration" evidence=ISS

GO:0031638 "zymogen activation" evidence=ISS

GO:0031648 "protein destabilization" evidence=ISS

GO:0032526 "response to retinoic acid" evidence=ISS

GO:0033619 "membrane protein proteolysis" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043129 "surfactant homeostasis" evidence=ISS

GO:0045766 "positive regulation of angiogenesis" evidence=ISS

GO:0060448 "dichotomous subdivision of terminal units involved in lung branching" evidence=ISS

GO:0070324 "thyroid hormone binding" evidence=ISS

GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS

GO:0097208 "alveolar lamellar body" evidence=ISS

UNIPROTKB|F7BJD8 CTSH "Uncharacterized protein" [Equus caballus (taxid:9796)]

 Score = 180 (68.4 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 31/58 (53%), Positives = 39/58 (67%)

Query:     5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
             H +PD ++HAVLAVGYGE +G PYW VKNSW  +WG  GY L+    N CG+    +Y
Sbjct:   243 HKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPHWGMNGYFLIERGKNMCGLAACASY 300

GO:0001656 "metanephros development" evidence=ISS

GO:0001913 "T cell mediated cytotoxicity" evidence=ISS

GO:0002764 "immune response-regulating signaling pathway" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0004177 "aminopeptidase activity" evidence=ISS

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005615 "extracellular space" evidence=ISS

GO:0005764 "lysosome" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0010634 "positive regulation of epithelial cell migration" evidence=ISS

GO:0010813 "neuropeptide catabolic process" evidence=ISS

GO:0010815 "bradykinin catabolic process" evidence=ISS

GO:0010952 "positive regulation of peptidase activity" evidence=ISS

GO:0016505 "apoptotic protease activator activity" evidence=ISS

GO:0030108 "HLA-A specific activating MHC class I receptor activity" evidence=ISS

GO:0030335 "positive regulation of cell migration" evidence=ISS

GO:0031638 "zymogen activation" evidence=ISS

GO:0031648 "protein destabilization" evidence=ISS

GO:0032526 "response to retinoic acid" evidence=ISS

GO:0033619 "membrane protein proteolysis" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043129 "surfactant homeostasis" evidence=ISS

GO:0045766 "positive regulation of angiogenesis" evidence=ISS

GO:0060448 "dichotomous subdivision of terminal units involved in lung branching" evidence=ISS

GO:0070324 "thyroid hormone binding" evidence=ISS

GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS

GO:0097208 "alveolar lamellar body" evidence=ISS

ZFIN|ZDB-GENE-040718-61 ctsl.1 "cathepsin L.1" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 36/63 (57%), Positives = 41/63 (65%)

Query:     5 HNSPD----GLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTA 59
             +N PD     LDH VLAVGYG  +G  YW VKNSW   WG QGY+LMS  K N CG+ TA
Sbjct:   269 YNEPDCSSSELDHGVLAVGYGSSNGDDYWIVKNSWGLDWGVQGYILMSRNKSNQCGIATA 328

Query:    60 PTY 62
              +Y
Sbjct:   329 ASY 331

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P00786	CATH_RAT	3, ., 4, ., 2, 2, ., 1, 6	0.5344	0.8923	0.1741	yes	N/A
P09668	CATH_HUMAN	3, ., 4, ., 2, 2, ., 1, 6	0.5344	0.8923	0.1731	yes	N/A
O46427	CATH_PIG	3, ., 4, ., 2, 2, ., 1, 6	0.5344	0.8923	0.1731	yes	N/A
Q8H166	ALEU_ARATH	3, ., 4, ., 2, 2, ., 1, 6	0.5087	0.8769	0.1592	yes	N/A
P25778	ORYC_ORYSJ	3, ., 4, ., 2, 2, ., -	0.5178	0.8615	0.1546	yes	N/A
Q54TR1	CFAD_DICDI	No assigned EC number	0.5862	0.8769	0.1073	yes	N/A
Q3T0I2	CATH_BOVIN	3, ., 4, ., 2, 2, ., 1, 6	0.5172	0.8923	0.1731	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	65
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	1e-23
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	3e-21
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	1e-18
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	2e-12
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	3e-11
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	7e-11
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	3e-10
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	7e-10
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	1e-08
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	5e-07
COG4870	372	COG4870, COG4870, Cysteine protease [Posttranslati	4e-06
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	1e-05
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	2e-04
pfam03051	438	pfam03051, Peptidase_C1_2, Peptidase C1-like famil	8e-04

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score = 87.7 bits (218), Expect = 1e-23
 Identities = 27/57 (47%), Positives = 36/57 (63%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 63
           S   L+HAVL VGYG  +G  YW VKNSW T WG +GY+ ++   N CG+ +  +Y 
Sbjct: 154 SNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score = 81.4 bits (202), Expect = 3e-21
 Identities = 28/54 (51%), Positives = 34/54 (62%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 64
           LDHAVL VGYG  +G PYW VKNSW T WG  GY  ++   N CG+ +  +Y  
Sbjct: 160 LDHAVLIVGYGTENGVPYWIVKNSWGTDWGENGYFRIARGVNECGIASEASYPI 213

Length = 213

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 73.8 bits (182), Expect = 1e-18
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 7   SPDGLDHAVLAVGYGE--LDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYV 63
               LDHAVL VGYG    +GK YW VKNSW T WG  GY  ++  K+N CG+  +    
Sbjct: 115 GSGTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVASY 174

Length = 175

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score = 58.4 bits (142), Expect = 2e-12
 Identities = 20/43 (46%), Positives = 24/43 (55%)

Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCG 55
           HAV  +G+G  +G PYW   NSW T WG  GY  +    N CG
Sbjct: 186 HAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECG 228

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 55.6 bits (134), Expect = 3e-11
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 12  DHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 51
            HAV+ VGY    ++GK  + VKNSW T WG+ GY  +S +D
Sbjct: 172 GHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 55.1 bits (133), Expect = 7e-11
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 9   DGLDHAVLAVG--YGELDGKPYWQVKNSWSTYWGNQGYVLM---SIKDNNCGVMT 58
             L+HAVL VG  Y E   K YW +KNSW T WG  GY+ +   +   + CG++T
Sbjct: 384 KSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILT 438

Length = 448

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score = 52.8 bits (127), Expect = 3e-10
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 11  LDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 64
            +HAVL VG+G  E+ G+ YW VKNSW + WG +GY  +    N CG+ +   +  
Sbjct: 186 TNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFAY 241

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 52.4 bits (125), Expect = 7e-10
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAP 60
           L+H VL VGY      PYW +KNSW   WG +GYV +++  N C +   P
Sbjct: 286 LNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYP 335

Length = 348

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 48.5 bits (115), Expect = 1e-08
 Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 5/41 (12%)

Query: 9   DGLDHAVLAVGYG-----ELDGKPYWQVKNSWSTYWGNQGY 44
           D  DHAV  VGYG     E + K YW V+NSW  YWG++GY
Sbjct: 719 DTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGY 759

Length = 1004

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 44.2 bits (104), Expect = 5e-07
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 9   DGLDHAVLAVGYGE--LDGKP--YWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 63
           + ++HA++ VG+GE  ++GK   YW  +NSW   WG +GY  +    N  G+ +   ++
Sbjct: 616 EKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFI 674

Length = 693

>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 13  HAVLAVGYGEL----------DGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAP 60
           HAVL VGY +            G   + +KNSW T WG  GY  +S      G   A 
Sbjct: 266 HAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALNGDAEAL 323

Length = 372

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 6   NSPDGL-DHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGY 44
              D L +H +   G+G + +G  YW V+NSW   WG +G+
Sbjct: 172 YVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGW 212

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 12/59 (20%)

Query: 9   DGLDHAVLAVGYG------ELDGKP----YWQVKNSWSTYWGNQGYVLMSIKDNNCGVM 57
           +  +HAV+ VGYG          K     Y+ +KNSW   WG +G+  + I+ +  G+M
Sbjct: 418 EEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGF--IRIETDENGLM 474

Length = 489

>gnl|CDD|202517 pfam03051, Peptidase_C1_2, Peptidase C1-like family

 Score = 35.0 bits (81), Expect = 8e-04
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 11  LDHAVLAVGYGELDGKPY--WQVKNSWSTYWGNQGYVLMS 48
           + HA++  G  E D      W+V+NSW    G +GY +MS
Sbjct: 359 MTHAMVLTGVDEDDDGKPTKWKVENSWGDDSGKKGYFVMS 398

This family is closely related to the Peptidase_C1 family pfam00112, containing several prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases. Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
PTZ00203	348	cathepsin L protease; Provisional	99.91
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	99.91
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	99.9
KOG1542|consensus	372		99.9
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	99.89
PF00112	219	Peptidase_C1: Papain family cysteine protease This	99.89
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	99.89
PTZ00200	448	cysteine proteinase; Provisional	99.87
PTZ00021	489	falcipain-2; Provisional	99.87
KOG1543|consensus	325		99.86
smart00645	174	Pept_C1 Papain family cysteine protease.	99.86
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	99.84
PTZ00049	693	cathepsin C-like protein; Provisional	99.84
PTZ00462	1004	Serine-repeat antigen protein; Provisional	99.8
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	99.72
KOG1544|consensus	470		99.56
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.51
COG4870	372	Cysteine protease [Posttranslational modification,	99.3
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	99.1
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	98.33
KOG4128|consensus	457		95.19
PF05543	175	Peptidase_C47: Staphopain peptidase C47; InterPro:	88.56
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	86.72

>PTZ00203 cathepsin L protease; Provisional

Probab=99.91  E-value=3.1e-24  Score=152.32  Aligned_cols=60  Identities=38%  Similarity=0.774  Sum_probs=53.8

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~v   65 (65)
                      |+...+||||+|||||.+++.+|||||||||++||++|||||.|+.|.|+|+.++....|
T Consensus       281 c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~~~  340 (348)
T PTZ00203        281 CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSVHV  340 (348)
T ss_pred             cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEEec
Confidence            445568999999999998899999999999999999999999999999999988776543

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=99.91  E-value=3.8e-24  Score=143.83  Aligned_cols=58  Identities=24%  Similarity=0.604  Sum_probs=53.6

Q ss_pred             CCCCCCeEEEEEEEeccC-CeeEEEEEcCCCCCCCCCeEEEEeccC-----CeeeeccccEEEE
Q psy3964           7 SPDGLDHAVLAVGYGELD-GKPYWQVKNSWSTYWGNQGYVLMSIKD-----NNCGVMTAPTYVT   64 (65)
Q Consensus         7 ~~~~~~Hav~ivG~g~~~-~~~yW~i~NSwg~~WG~~Gy~~i~~~~-----~~cgi~~~~~~p~   64 (65)
                      +...++|||+|||||.++ +.+|||||||||++||++|||||.|+.     |+|+|++.++|+.
T Consensus       174 ~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~~~  237 (239)
T cd02698         174 QDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWAD  237 (239)
T ss_pred             CCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceEEEe
Confidence            345689999999999876 899999999999999999999999998     9999999999985

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=99.90  E-value=9.2e-24  Score=141.74  Aligned_cols=56  Identities=36%  Similarity=0.745  Sum_probs=50.9

Q ss_pred             CCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEE
Q psy3964           7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY   62 (65)
Q Consensus         7 ~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~   62 (65)
                      +....+|||+|||||.+++++|||||||||++||++|||||+|+.|.|+|++.+..
T Consensus       180 ~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~  235 (236)
T cd02620         180 GKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA  235 (236)
T ss_pred             CCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence            34457899999999988899999999999999999999999999999999988763

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>KOG1542|consensus

Probab=99.90  E-value=3.2e-24  Score=153.08  Aligned_cols=59  Identities=47%  Similarity=0.912  Sum_probs=54.5

Q ss_pred             CCCCCCCeEEEEEEEeccC-CeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEE
Q psy3964           6 NSPDGLDHAVLAVGYGELD-GKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT   64 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~-~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~   64 (65)
                      |++..+||+|||||||... .+||||||||||++||++||+|+.||.|.|||+++++-+.
T Consensus       311 Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~  370 (372)
T KOG1542|consen  311 CSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA  370 (372)
T ss_pred             CCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence            6666799999999999887 8999999999999999999999999999999999887654

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=99.89  E-value=1.2e-23  Score=141.23  Aligned_cols=54  Identities=43%  Similarity=0.946  Sum_probs=50.4

Q ss_pred             CCCeEEEEEEEeccC--CeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEE
Q psy3964          10 GLDHAVLAVGYGELD--GKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV   63 (65)
Q Consensus        10 ~~~Hav~ivG~g~~~--~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p   63 (65)
                      ..+|||+|||||.+.  +.+|||||||||+.||++|||||.|+.|.|+|++.+.++
T Consensus       185 ~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~~  240 (243)
T cd02621         185 LTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFA  240 (243)
T ss_pred             cCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccceEee
Confidence            579999999999876  899999999999999999999999999999999998764

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=99.89  E-value=3.8e-23  Score=133.27  Aligned_cols=59  Identities=46%  Similarity=0.887  Sum_probs=53.6

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCC-eeeeccccEEEE
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN-NCGVMTAPTYVT   64 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~-~cgi~~~~~~p~   64 (65)
                      +.+...+|||+||||+.+.+++||++|||||++||++||++|+++.+ .|+|+..++||+
T Consensus       160 ~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~  219 (219)
T PF00112_consen  160 CSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI  219 (219)
T ss_dssp             SSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred             cccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence            33457899999999999999999999999999999999999999886 999999999996

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=99.89  E-value=3.8e-23  Score=134.04  Aligned_cols=56  Identities=46%  Similarity=0.973  Sum_probs=52.0

Q ss_pred             CCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEE
Q psy3964           8 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV   63 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p   63 (65)
                      ....+|||+|||||.+.+.+|||||||||++||++||+||+++.+.|+|+..+.||
T Consensus       155 ~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~  210 (210)
T cd02248         155 NTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP  210 (210)
T ss_pred             CCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence            45678999999999988899999999999999999999999999999999888776

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>PTZ00200 cysteine proteinase; Provisional

Probab=99.87  E-value=1.2e-22  Score=148.16  Aligned_cols=58  Identities=40%  Similarity=0.786  Sum_probs=51.9

Q ss_pred             CCCCCeEEEEEEEecc--CCeeEEEEEcCCCCCCCCCeEEEEecc---CCeeeeccccEEEEC
Q psy3964           8 PDGLDHAVLAVGYGEL--DGKPYWQVKNSWSTYWGNQGYVLMSIK---DNNCGVMTAPTYVTM   65 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~--~~~~yW~i~NSwg~~WG~~Gy~~i~~~---~~~cgi~~~~~~p~v   65 (65)
                      +..++|||+|||||.+  ++.+|||||||||++||++|||||.|+   .|.|||++.+.||++
T Consensus       383 ~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~  445 (448)
T PTZ00200        383 GKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVGLTPVF  445 (448)
T ss_pred             CCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence            3458999999999953  578999999999999999999999985   589999999999974

>PTZ00021 falcipain-2; Provisional

Probab=99.87  E-value=2.6e-22  Score=147.90  Aligned_cols=59  Identities=29%  Similarity=0.685  Sum_probs=51.7

Q ss_pred             CCCCCCeEEEEEEEeccC----------CeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           7 SPDGLDHAVLAVGYGELD----------GKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         7 ~~~~~~Hav~ivG~g~~~----------~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      |+..++|||+|||||.++          +.+|||||||||++||++|||||.|+.    +.|||.+.+.||++
T Consensus       416 C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~~  488 (489)
T PTZ00021        416 CGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPLI  488 (489)
T ss_pred             CCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEec
Confidence            345689999999999753          257999999999999999999999975    58999999999985

>KOG1543|consensus

Probab=99.86  E-value=2.9e-22  Score=141.04  Aligned_cols=59  Identities=47%  Similarity=0.915  Sum_probs=53.1

Q ss_pred             CCCC-CCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEE-EE
Q psy3964           6 NSPD-GLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY-VT   64 (65)
Q Consensus         6 ~~~~-~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~-p~   64 (65)
                      ++.. .++|||+|||||..++.+|||+|||||+.||++|||||.|+.+.|+|+..+.| |+
T Consensus       263 ~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~  323 (325)
T KOG1543|consen  263 KGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPI  323 (325)
T ss_pred             CCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCC
Confidence            3444 59999999999996678999999999999999999999999999999999888 54

>smart00645 Pept_C1 Papain family cysteine protease

Probab=99.86  E-value=1.4e-21  Score=126.43  Aligned_cols=55  Identities=49%  Similarity=0.973  Sum_probs=48.1

Q ss_pred             CCCCCCCeEEEEEEEecc-CCeeEEEEEcCCCCCCCCCeEEEEeccC-Ceeeecccc
Q psy3964           6 NSPDGLDHAVLAVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAP   60 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~-~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~   60 (65)
                      |+....+|+|+|||||.+ ++++|||+|||||+.||++|||||.++. +.|+|+...
T Consensus       114 ~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~  170 (174)
T smart00645      114 CGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV  170 (174)
T ss_pred             CCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeee
Confidence            333447999999999987 7899999999999999999999999987 999996544

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=99.84  E-value=3.3e-21  Score=143.58  Aligned_cols=55  Identities=24%  Similarity=0.589  Sum_probs=50.4

Q ss_pred             CCCCeEEEEEEEec-cCCeeEEEEEcCCCC--CCCCCeEEEEeccCCeeeeccccEEE
Q psy3964           9 DGLDHAVLAVGYGE-LDGKPYWQVKNSWST--YWGNQGYVLMSIKDNNCGVMTAPTYV   63 (65)
Q Consensus         9 ~~~~Hav~ivG~g~-~~~~~yW~i~NSwg~--~WG~~Gy~~i~~~~~~cgi~~~~~~p   63 (65)
                      ..+||||+|||||. +++.+|||||||||+  +|||+|||||.|+.|+|||++.+...
T Consensus       400 ~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~N~CGIes~~v~~  457 (548)
T PTZ00364        400 SNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVVVM  457 (548)
T ss_pred             ccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCCCcccccceeeee
Confidence            46899999999997 468899999999999  99999999999999999999998743

>PTZ00049 cathepsin C-like protein; Provisional

Probab=99.84  E-value=3.8e-21  Score=145.94  Aligned_cols=55  Identities=33%  Similarity=0.799  Sum_probs=50.3

Q ss_pred             CCCeEEEEEEEecc--CC--eeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEE
Q psy3964          10 GLDHAVLAVGYGEL--DG--KPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT   64 (65)
Q Consensus        10 ~~~Hav~ivG~g~~--~~--~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~   64 (65)
                      .++|||+|||||.+  ++  .+|||||||||+.||++|||||.|+.|.|||++++.|+.
T Consensus       617 ~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~  675 (693)
T PTZ00049        617 KVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIE  675 (693)
T ss_pred             cCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEe
Confidence            57999999999975  35  379999999999999999999999999999999999875

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=99.80  E-value=6.5e-20  Score=142.97  Aligned_cols=59  Identities=39%  Similarity=0.818  Sum_probs=50.8

Q ss_pred             CCCCCCCeEEEEEEEecc-----CCeeEEEEEcCCCCCCCCCeEEEEec-cCCeeeeccccEEEE
Q psy3964           6 NSPDGLDHAVLAVGYGEL-----DGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVT   64 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~-----~~~~yW~i~NSwg~~WG~~Gy~~i~~-~~~~cgi~~~~~~p~   64 (65)
                      |+...++|||+|||||.+     ++++|||||||||+.||++|||||.| +.+.|++.....+|+
T Consensus       716 Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~  780 (1004)
T PTZ00462        716 CGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVI  780 (1004)
T ss_pred             CCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeee
Confidence            444568999999999964     25799999999999999999999998 789999987777665

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=99.72  E-value=1.3e-17  Score=107.55  Aligned_cols=47  Identities=45%  Similarity=0.697  Sum_probs=41.6

Q ss_pred             CCCCCCCCeEEEEEEEeccC--CeeEEEEEcCCCCCCCCCeEEEEeccC
Q psy3964           5 HNSPDGLDHAVLAVGYGELD--GKPYWQVKNSWSTYWGNQGYVLMSIKD   51 (65)
Q Consensus         5 ~~~~~~~~Hav~ivG~g~~~--~~~yW~i~NSwg~~WG~~Gy~~i~~~~   51 (65)
                      .++....+|||+|||||.+.  +++||++|||||+.||++||+|+++..
T Consensus       165 ~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~  213 (223)
T cd02619         165 YEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED  213 (223)
T ss_pred             cCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence            34556789999999999876  889999999999999999999999863

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>KOG1544|consensus

Probab=99.56  E-value=3.4e-15  Score=107.56  Aligned_cols=55  Identities=29%  Similarity=0.593  Sum_probs=47.6

Q ss_pred             CCCCCCCeEEEEEEEeccC-----CeeEEEEEcCCCCCCCCCeEEEEeccCCeeeecccc
Q psy3964           6 NSPDGLDHAVLAVGYGELD-----GKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAP   60 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~-----~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~   60 (65)
                      ..-....|+|.|+|||++.     ..+||+..||||+.|||+||||+.||.|+|.|++..
T Consensus       396 ~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfv  455 (470)
T KOG1544|consen  396 RYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFV  455 (470)
T ss_pred             hhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhh
Confidence            3344567999999999763     467999999999999999999999999999998754

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.51  E-value=1.4e-14  Score=105.93  Aligned_cols=43  Identities=35%  Similarity=0.627  Sum_probs=37.8

Q ss_pred             CCCCCCeEEEEEEEeccC-Ce-eEEEEEcCCCCCCCCCeEEEEec
Q psy3964           7 SPDGLDHAVLAVGYGELD-GK-PYWQVKNSWSTYWGNQGYVLMSI   49 (65)
Q Consensus         7 ~~~~~~Hav~ivG~g~~~-~~-~yW~i~NSwg~~WG~~Gy~~i~~   49 (65)
                      +.+.++|||+||||+.++ ++ .||+||||||+.||++||++|++
T Consensus       354 ~es~~tHAM~ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~  398 (437)
T cd00585         354 GESLMTHAMVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSD  398 (437)
T ss_pred             cCCcCCeEEEEEEEEecCCCCcceEEEEcccCCCCCCCcceehhH
Confidence            344679999999999864 76 59999999999999999999986

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=3e-12  Score=92.25  Aligned_cols=42  Identities=43%  Similarity=0.814  Sum_probs=36.2

Q ss_pred             CCCCeEEEEEEEeccC----------CeeEEEEEcCCCCCCCCCeEEEEecc
Q psy3964           9 DGLDHAVLAVGYGELD----------GKPYWQVKNSWSTYWGNQGYVLMSIK   50 (65)
Q Consensus         9 ~~~~Hav~ivG~g~~~----------~~~yW~i~NSwg~~WG~~Gy~~i~~~   50 (65)
                      +..+|||+||||+..-          +..-||||||||+.||++||++++..
T Consensus       262 ~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~  313 (372)
T COG4870         262 ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYY  313 (372)
T ss_pred             ccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEee
Confidence            6778999999998541          34489999999999999999999974

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.10  E-value=1.2e-10  Score=85.40  Aligned_cols=41  Identities=41%  Similarity=0.721  Sum_probs=33.9

Q ss_pred             CCCCeEEEEEEEec-cCCe-eEEEEEcCCCCCCCCCeEEEEec
Q psy3964           9 DGLDHAVLAVGYGE-LDGK-PYWQVKNSWSTYWGNQGYVLMSI   49 (65)
Q Consensus         9 ~~~~Hav~ivG~g~-~~~~-~yW~i~NSwg~~WG~~Gy~~i~~   49 (65)
                      +..+|||+|||... ++++ .+|+|+||||++.|.+||+.|+.
T Consensus       357 S~~tHAM~itGv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd  399 (438)
T PF03051_consen  357 STMTHAMVITGVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSD  399 (438)
T ss_dssp             S--EEEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred             CCCceeEEEEEEEeccCCCeeEEEEEcCCCCCCCCCcEEEECH
Confidence            46789999999997 4566 48999999999999999999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=98.33  E-value=1.2e-07  Score=69.08  Aligned_cols=40  Identities=35%  Similarity=0.678  Sum_probs=34.6

Q ss_pred             CCCeEEEEEEEecc-CCeeE-EEEEcCCCCCCCCCeEEEEec
Q psy3964          10 GLDHAVLAVGYGEL-DGKPY-WQVKNSWSTYWGNQGYVLMSI   49 (65)
Q Consensus        10 ~~~Hav~ivG~g~~-~~~~y-W~i~NSwg~~WG~~Gy~~i~~   49 (65)
                      -+.|||+|+|.+.+ ++.+. |.|+||||.+-|.+|||.++.
T Consensus       360 LmTHAMvlTGvd~d~~g~p~rwkVENSWG~d~G~~GyfvaSd  401 (444)
T COG3579         360 LMTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYFVASD  401 (444)
T ss_pred             HHHHHHHhhccccccCCCceeeEeecccccccCCCceEeehH
Confidence            36799999999965 45665 999999999999999999874

>KOG4128|consensus

Probab=95.19  E-value=0.0011  Score=48.65  Aligned_cols=39  Identities=31%  Similarity=0.466  Sum_probs=31.6

Q ss_pred             CCeEEEEEEEecc-C---CeeEEEEEcCCCCCCCCCeEEEEec
Q psy3964          11 LDHAVLAVGYGEL-D---GKPYWQVKNSWSTYWGNQGYVLMSI   49 (65)
Q Consensus        11 ~~Hav~ivG~g~~-~---~~~yW~i~NSwg~~WG~~Gy~~i~~   49 (65)
                      .+|||++++.+.. .   +-.-|.|+||||.+-|.+|+.+|..
T Consensus       371 mthAml~T~v~~kd~~~g~~~~~rVenswgkd~gkkg~~~mt~  413 (457)
T KOG4128|consen  371 MTHAMLLTSVGLKDPATGGLNEHRVENSWGKDLGKKGVNKMTA  413 (457)
T ss_pred             HHHHHHhhhccccCcccCCchhhhhhchhhhhccccchhhhhH
Confidence            5799999999942 2   2234999999999999999988763

>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.56  E-value=1.1  Score=29.93  Aligned_cols=39  Identities=26%  Similarity=0.438  Sum_probs=24.6

Q ss_pred             CCCCCCeEEEEEEEec-cCCeeEEEEEcCCCCCCCCCeEEEEecc
Q psy3964           7 SPDGLDHAVLAVGYGE-LDGKPYWQVKNSWSTYWGNQGYVLMSIK   50 (65)
Q Consensus         7 ~~~~~~Hav~ivG~g~-~~~~~yW~i~NSwg~~WG~~Gy~~i~~~   50 (65)
                      +.....||++|+||.. .++.++..+=|=|-.     +++.++..
T Consensus       115 ~~~~~gHAlavvGya~~~~g~~~y~~WNPW~~-----~~~~~sa~  154 (175)
T PF05543_consen  115 NGPHAGHALAVVGYAKPNNGQKTYYFWNPWWN-----DVMIQSAK  154 (175)
T ss_dssp             TTB--EEEEEEEEEEEETTSEEEEEEE-TT-S-----S-EEEETT
T ss_pred             CCCccceeEEEEeeeecCCCCeEEEEeCCccC-----CcEEEecC
Confidence            4446789999999986 457889888886633     45555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=86.72  E-value=0.79  Score=26.79  Aligned_cols=24  Identities=33%  Similarity=0.580  Sum_probs=14.9

Q ss_pred             CCCCeEEEEEEEeccCCeeEEEEEcCC
Q psy3964           9 DGLDHAVLAVGYGELDGKPYWQVKNSW   35 (65)
Q Consensus         9 ~~~~Hav~ivG~g~~~~~~yW~i~NSw   35 (65)
                      ....|.|+|+||..+.   ++++..+|
T Consensus       121 ~~~~H~vvi~Gy~~~~---~~~v~DP~  144 (144)
T PF13529_consen  121 TYGGHYVVIIGYDEDG---YVYVNDPW  144 (144)
T ss_dssp             -TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred             CcCCEEEEEEEEeCCC---EEEEeCCC
Confidence            3568999999998643   56665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	65
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		5e-13
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		2e-11
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		4e-11
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		5e-11
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		5e-11
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		5e-11
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		5e-11
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		5e-11
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		2e-10
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		2e-10
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		2e-10
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		2e-10
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		2e-10
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		2e-10
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		2e-10
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		2e-10
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		2e-10
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		2e-10
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		2e-10
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		3e-10
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		3e-10
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		7e-10
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		8e-10
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		4e-09
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		5e-09
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		6e-09
3of8_A	221	Structural Basis For Reversible And Irreversible In		6e-09
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		6e-09
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		6e-09
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		6e-09
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		6e-09
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		6e-09
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		7e-09
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		7e-09
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		8e-09
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		9e-09
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		1e-08
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		1e-08
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		2e-08
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		2e-08
2act_A	220	Crystallographic Refinement Of The Structure Of Act		3e-08
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		3e-08
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		3e-08
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		4e-08
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		5e-08
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		7e-08
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		7e-08
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		1e-07
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		1e-07
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		2e-07
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		2e-07
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		2e-07
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		4e-07
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		5e-07
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		5e-07
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		5e-07
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		7e-07
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		5e-06
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		6e-06
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		9e-06
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		1e-05
1mir_A	322	Rat Procathepsin B Length = 322		1e-05
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		1e-05
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		1e-05
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		1e-05
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		1e-05
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		1e-05
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		1e-05
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		1e-05
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		1e-05
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		1e-05
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		2e-05
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		2e-05
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		2e-05
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		2e-05
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		2e-05
3u8e_A	222	Crystal Structure Of Cysteine Protease From Bulbs O		2e-05
1xkg_A	312	Crystal Structure Of The Major House Dust Mite Alle		2e-05
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		2e-05
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		2e-05
2as8_A	222	Crystal Structure Of Mature And Fully Active Der P		4e-05
3rvw_A	222	Crystal Structure Of Der P 1 Complexed With Fab 4c1		4e-05
3f5v_A	222	C2 Crystal Form Of Mite Allergen Der P 1 Length = 2		4e-05
3ioq_A	213	Crystal Structure Of The Carica Candamarcensis Cyst		7e-05
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		3e-04
3ima_A	212	Complex Strcuture Of Tarocystatin And Papain Length		3e-04
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		3e-04
2cio_A	212	The High Resolution X-Ray Structure Of Papain Compl		3e-04
1khp_A	212	Monoclinic Form Of Papain/zlfg-dam Covalent Complex		3e-04
1stf_E	212	The Refined 2.4 Angstroms X-Ray Crystal Structure O		3e-04
1ppp_A	212	Crystal Structure Of Papain-E64-C Complex. Binding		3e-04
1pip_A	212	Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al		3e-04
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		4e-04
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		4e-04
1icf_B	42	Crystal Structure Of Mhc Class Ii Associated P41 Ii		5e-04

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 38/58 (65%)
Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           H +PD ++HAVLAVGYGE +G PYW VKNSW   WG  GY L+    N CG+    +Y
Sbjct: 158 HKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
           S D L+HAVLAVGYG   G  +W +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 156 SSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANLASFPKM 215

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
           S D L+HAVLAVGYG   G  +W +KNSW   WGN GY+LM+  K+N CG+    ++  M
Sbjct: 156 SSDALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNACGIANLASFPKM 215

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 9   DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
           D L+HAVLAVGYG   G  +W +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 156 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 213

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 9   DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
           D L+HAVLAVGYG   G  +W +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 157 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 214

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 9   DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
           D L+HAVLAVGYG   G  +W +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 158 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 9   DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
           D L+HAVLAVGYG   G  +W +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 257 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 9   DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
           D L+HAVLAVGYG   G  +W +KNSW   WGN+GY+LM+   NN CG+    ++  M
Sbjct: 160 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 217

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 164 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 216

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 165 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 217

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 163 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 215

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 163 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 215

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 163 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 215

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 260 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 312

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSY 214

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSY 214

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E DG  YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 249 SSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 308
Query: 62  YVTM 65
           Y T+
Sbjct: 309 YPTV 312

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 9   DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
           D L+HAVLAVGYGE  G  +W +KNSW   WG  GY+ M+   NN CG+    ++  M
Sbjct: 158 DNLNHAVLAVGYGESKGNKHWIIKNSWGENWGMGGYIKMARNKNNACGIANLASFPKM 215

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 253 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 312
Query: 62  YVTM 65
           Y T+
Sbjct: 313 YPTV 316

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 195 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 254
Query: 62  YVTM 65
           Y T+
Sbjct: 255 YPTV 258

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 158 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 217
Query: 62  YVTM 65
           Y T+
Sbjct: 218 YPTV 221

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 158 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 217
Query: 62  YVTM 65
           Y T+
Sbjct: 218 YPTV 221

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
Query: 62  YVTM 65
           Y T+
Sbjct: 217 YPTV 220

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
Query: 62  YVTM 65
           Y T+
Sbjct: 217 YPTV 220

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
Query: 62  YVTM 65
           Y T+
Sbjct: 217 YPTV 220

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
Query: 62  YVTM 65
           Y T+
Sbjct: 217 YPTV 220

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
Query: 62  YVTM 65
           Y T+
Sbjct: 217 YPTV 220

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S   LDH VL VGYG      D   YW VKNSW   WG+ GYV ++  K+N+CG+ TA +
Sbjct: 158 SSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217
Query: 62  Y 62
           Y
Sbjct: 218 Y 218

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S   LDH VL VGYG      D   YW VKNSW   WG+ GYV ++  K+N+CG+ TA +
Sbjct: 158 SSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217
Query: 62  Y 62
           Y
Sbjct: 218 Y 218

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 9   DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
           + LDH VL VGY +    PYW +KNSW+T WG +GY+ ++   N C V
Sbjct: 158 EALDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLV 205

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           SP  +DHAVL VGYG+    P+W +KNSW T WG +GY  +      CGV T
Sbjct: 155 SPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNT 206

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLM-SIKDNNCGVMTAPT 61
           SP  ++HAVLAVGYG   G  YW VKNSW   WG +GY+ M   + N CG+ +  +
Sbjct: 247 SPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLAS 302

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 9   DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
           + LDH VL VGY +    PYW +KNSW+T WG +GY+ ++   N C V
Sbjct: 158 EQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLV 205

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNC 54
           LDH VL VGY +    PYW +KNSW+T WG +GY+ ++   N C
Sbjct: 160 LDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNC 54
           LDH VL VGY +    PYW +KNSW+T WG +GY+ ++   N C
Sbjct: 160 LDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 62
           +DHA++ VGYG   G  YW VKNSW T WG +GY  M I  N      CG+ T P+Y
Sbjct: 160 VDHAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGY--MRILRNVGGAGTCGIATMPSY 214

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 62
           +DHAV  VGYG   G  YW VKNSW T WG +GY  M I  N      CG+ T P+Y
Sbjct: 160 IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGY--MRILRNVGGAGTCGIATMPSY 214

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD--NNCGVMTAPTYVTM 65
           L+H VL VGYG  +G+ YW +KNSW + WG  GY    +++  NNCG+ TA +Y  +
Sbjct: 274 LNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGY-WRQVRNYGNNCGIATAASYPAL 329

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 12  DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVT 64
           +H V+ VGYG   GK YW V+NSW   WGNQGY+ M     +    CG+   P+Y T
Sbjct: 157 NHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 11  LDHAVLAVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
           L+HA+L VGYG + + + YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 161 LNHAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNC 54
           LDH VL VGY +    PYW +KNSWS  WG  GY+ +    N C
Sbjct: 160 LDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQC 203

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 11  LDHAVLAVGYGE-LDGKPYWQVKNSWSTYWGNQGYVLM----SIKDNNCGVMTAPTY 62
           LDH V  VGYG  +DG  YW VKNSW   WG +GY+ M    S K+  CG+    +Y
Sbjct: 160 LDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASY 216

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
           LDHAV AVGYG  DGK Y  +KNSW   WG +GY+ +  +  N    CGV  +  Y
Sbjct: 157 LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYY 212

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 11  LDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-----CGVMTAPTY 62
           LDH V  VGYG   DGK YW VKNSW   WG QGY+ +  KD+      CG+    +Y
Sbjct: 165 LDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVE-KDSGASGGLCGIAMEASY 221

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
           HAV  VG+G  +G PYW++ NSW+T WG  GY L+    + CG+
Sbjct: 282 HAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 325

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
           HAV  VG+G  +G PYW++ NSW+T WG  GY L+    + CG+
Sbjct: 260 HAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 303

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
           HAV  VG+G  +G PYW++ NSW+T WG  GY L+    + CG+
Sbjct: 259 HAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 302

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 62
           +DHAV  VGYG   G  YW VKNSW T WG +GY  M I+ N      CG+    +Y
Sbjct: 160 VDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGY--MRIQRNVGGVGQCGIAKKASY 214

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 62
           +DHAV  VGYG   G  YW VKNSW T WG +GY  M I+ N      CG+    +Y
Sbjct: 160 VDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGY--MRIQRNVGGVGQCGIAKKASY 214

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 11  LDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSI---KDNNCGVMTAPTYVTM 65
           LDH VL VGYG  +   K +W +KNSW T WG  GY+ M++   ++  CG++   ++  M
Sbjct: 165 LDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 6   NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPT 61
           +SP G++H VL VGYG  DG  YW  KNSW   WG  GY+ +     N    CG+    +
Sbjct: 161 SSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFAS 220
Query: 62  Y 62
           Y
Sbjct: 221 Y 221

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
             HAVL VGYG  +G+ YW VKNSW   WG  GY  ++   NN CG+    +  T+
Sbjct: 276 FTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 1   MRKGHNSPDGLDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           +R   N  +  +HAVL VGYG     G  YW VKNSW T WG  GY  +    + C + +
Sbjct: 369 LRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIES 428
Query: 59  APTYVT 64
                T
Sbjct: 429 IAVAAT 434

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN--CGVMTAPTYVT 64
           L+H V+ VGYG    K YW V+NSW  +WG QGY  M        CG+   P Y T
Sbjct: 155 LNHGVVIVGYG----KDYWIVRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYPT 206

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 262 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 307

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+  WG+ G+  +   +N+CG+ +
Sbjct: 205 HAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 250

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+  WG+ G+  +   +N+CG+ +
Sbjct: 261 HAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 306

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 199 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 244

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 201 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 246

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 199 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 244

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 205 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 250

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 200 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 245

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+  WG+ G+  +   +N+CG+ +
Sbjct: 199 HAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 244

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 150 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 195

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 199 HAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 244

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12  DHAVLAVGYGE--LDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           +HAVL VGYG+  + G  YW VKNSW + WG  GY  +    + C + +
Sbjct: 379 NHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIES 427

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN--CGVMTAPTYVT 64
           L+H V+ VGY     K YW V+NSW  YWG QGY+ M        CG+   P Y T
Sbjct: 155 LNHGVVIVGYW----KDYWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYPT 206

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
           HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +
Sbjct: 151 HAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 12 DHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 64
          +HAVL VGYG     G  YW VKNSW T WG  GY  +    + C + +     T
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 64

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 27/53 (50%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
           HAV  VGYG   G  YW V+NSW T WG+ GY      +N   +   P  V M
Sbjct: 171 HAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIEQYPYVVIM 223

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 12  DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVL----MSIKDNNCGVMTAPTY 62
           +HA+  VGYG  + K +W VKNSW   WG  GY+     +   D  CG+    +Y
Sbjct: 160 NHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 214

>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 5   HNSPDGLDHAVLAVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIKDN 52
            + P  +DH VL VGYG       YW VKNSW T WG  GY+L+    N
Sbjct: 154 SDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTN 202

>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 44
           HAV  VGY    G  YW V+NSW T WG+ GY
Sbjct: 250 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 9   DGLDHAVLAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI 49
           D  DHAV  VGYG     E + K YW V+NSW  YWG++GY  + +
Sbjct: 195 DTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 240

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 9   DGLDHAVLAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI 49
           D  DHAV  VGYG     E + K YW V+NSW  YWG++GY  + +
Sbjct: 196 DTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 241

>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 44
           HAV  VGY    G  YW V+NSW T WG+ GY
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201

>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 44
           HAV  VGY    G  YW V+NSW T WG+ GY
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201

>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 44
           HAV  VGY    G  YW V+NSW T WG+ GY
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201

>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVT 64
           +DHAV AVGYG      Y  +KNSW T WG  GY+ +     N    CGV++   + T
Sbjct: 157 IDHAVAAVGYG----NDYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPT 210

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 12  DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTY 62
           DHAV AVGYG    K Y  +KNSW   WG +GY+ +          CGV T+  +
Sbjct: 158 DHAVTAVGYG----KTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFF 208

>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
           +DHAV AVGYG      Y  +KNSW T WG  GY+ +     N    CG+ T+  Y
Sbjct: 157 VDHAVAAVGYG----PNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPT 61
           HA+  +G+G  +  PYW + NSW+  WG  GY  +    + C + +  T
Sbjct: 201 HAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVT 249

>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
           +DHAV AVGYG      Y  +KNSW T WG  GY+ +     N    CG+ T+  Y
Sbjct: 157 VDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
           +DHAV AVGYG      Y  +KNSW T WG  GY+ +     N    CG+ T+  Y
Sbjct: 157 VDHAVAAVGYG----PNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
           +DHAV AVGYG      Y  +KNSW T WG  GY+ +     N    CG+ T+  Y
Sbjct: 157 VDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
           +DHAV AVGYG      Y  +KNSW T WG  GY+ +     N    CG+ T+  Y
Sbjct: 157 VDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
           +DHAV AVGYG      Y  +KNSW T WG  GY+ +     N    CG+ T+  Y
Sbjct: 157 VDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
           +DHAV AVGYG      Y  ++NSW T WG  GY+ +     N    CG+ T+  Y
Sbjct: 308 VDHAVAAVGYG----PNYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 359

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN--CGVMTAPTYVT 64
           L+H V  VGY       YW V+NSW  YWG +GY+ M        CG+   P Y T
Sbjct: 155 LNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206

>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 42

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 28 YWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
          YW VKNSW   WG  GYV M+  + N+CG+ +A +Y T+
Sbjct: 4  YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	65
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	2e-29
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	8e-29
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	1e-28
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	1e-27
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	1e-27
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	6e-27
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	3e-26
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	3e-26
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	7e-26
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	2e-25
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	2e-25
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	4e-25
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	8e-25
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	2e-24
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	4e-24
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	9e-24
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	1e-23
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	4e-23
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	3e-22
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	4e-22
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	4e-22
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	5e-22
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	1e-21
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	1e-21
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	2e-21
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	5e-21
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	3e-20
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	5e-20
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	5e-20
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	1e-19
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	1e-19
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	2e-19
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	2e-19
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	2e-19
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	2e-19
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	6e-19
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	5e-18
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	3e-17
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	9e-17
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	3e-07

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score =  102 bits (257), Expect = 2e-29
 Identities = 31/58 (53%), Positives = 38/58 (65%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           H +PD ++HAVLAVGYGE +G PYW VKNSW   WG  GY L+    N CG+    +Y
Sbjct: 158 HKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  102 bits (257), Expect = 8e-29
 Identities = 21/62 (33%), Positives = 27/62 (43%)

Query: 4   GHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 63
             N      HAV  VGY    G  YW V+NSW T WG+ GY   +   +   +   P  V
Sbjct: 241 RDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVV 300

Query: 64  TM 65
            +
Sbjct: 301 IL 302

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A* Length = 222

 Score =  100 bits (251), Expect = 1e-28
 Identities = 21/62 (33%), Positives = 27/62 (43%)

Query: 4   GHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 63
             N      HAV  VGY    G  YW V+NSW T WG+ GY   +   +   +   P  V
Sbjct: 161 RDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVV 220

Query: 64  TM 65
            +
Sbjct: 221 IL 222

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score = 99.6 bits (249), Expect = 1e-27
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS-IKDNNCGVMTAPTYVTM 65
             +   HAVL VGYG  +G+ YW VKNSW   WG  GY  ++   +N+CG+    +  T+
Sbjct: 272 ETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score = 97.2 bits (243), Expect = 1e-27
 Identities = 26/62 (41%), Positives = 34/62 (54%)

Query: 4   GHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 63
              SP  +DHAVL VGYG+    P+W +KNSW T WG +GY  +      CGV T  +  
Sbjct: 152 PLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSA 211

Query: 64  TM 65
            +
Sbjct: 212 VV 213

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score = 95.6 bits (239), Expect = 6e-27
 Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
           + D L+HAVLAVGYG   G  +W +KNSW   WGN+GY+LM+  K+N CG+    ++  M
Sbjct: 156 NSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score = 94.1 bits (235), Expect = 3e-26
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 64
             + LDH VL VGY +    PYW +KNSW+T WG +GY+ ++   N C V    +   
Sbjct: 156 VSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score = 96.2 bits (240), Expect = 3e-26
 Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
           + D L+HAVLAVGYG   G  +W +KNSW   WGN+GY+LM+  K+N CG+    ++  M
Sbjct: 255 NSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score = 95.0 bits (237), Expect = 7e-26
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
           +   L+H VL VGYG  +G+ YW +KNSW + WG  GY        NNCG+ TA +Y  +
Sbjct: 270 NQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAASYPAL 329

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score = 92.2 bits (230), Expect = 2e-25
 Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y  +
Sbjct: 163 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score = 93.8 bits (234), Expect = 2e-25
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
           SP  ++HAVLAVGYG   G  YW VKNSW   WG +GY+ M   + N CG+ +  +   +
Sbjct: 247 SPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPMV 306

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score = 93.1 bits (232), Expect = 4e-25
 Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
           ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y  +
Sbjct: 260 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score = 91.2 bits (227), Expect = 8e-25
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 7   SPDGLDHAVLAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAP 60
             D  DHAV  VGYG     E + K YW V+NSW  YWG++GY  + +    +C      
Sbjct: 194 GDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIH 253

Query: 61  TYVT 64
           + V 
Sbjct: 254 SVVI 257

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score = 89.6 bits (223), Expect = 2e-24
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTY 62
           SP G++H VL VGYG  DG  YW  KNSW   WG  GY+ +          CG+    +Y
Sbjct: 162 SPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASY 221

Query: 63  VTM 65
             +
Sbjct: 222 PII 224

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score = 88.4 bits (220), Expect = 4e-24
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216

Query: 62  YVTM 65
           Y T+
Sbjct: 217 YPTV 220

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A Length = 220

 Score = 87.6 bits (218), Expect = 9e-24
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS---IKDNNCGVMTAPTYVTM 65
           +DHAV  VGYG   G  YW VKNSW T WG +GY+ +         CG+    +Y   
Sbjct: 160 VDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPVK 217

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score = 89.2 bits (222), Expect = 1e-23
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 7   SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
           S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG+ +A +
Sbjct: 253 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 312

Query: 62  YVTM 65
           Y T+
Sbjct: 313 YPTV 316

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score = 85.6 bits (213), Expect = 4e-23
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
           +DHAV AVGYG+  GK Y  +KNSW T WG +GY+ +     N    CG+  +  Y
Sbjct: 157 VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYY 212

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score = 85.4 bits (212), Expect = 3e-22
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM 65
           +D AV AVGYG+  GK Y  +KNSW T WG +GY+ +     N    CG+  +  Y T 
Sbjct: 263 VDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 321

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score = 83.4 bits (207), Expect = 4e-22
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 11  LDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMS---IKDNNCGVMTAPTYVTM 65
           LDH VL VGYG  +   K +W +KNSW T WG  GY+ M+    ++  CG++   ++  M
Sbjct: 165 LDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score = 83.4 bits (207), Expect = 4e-22
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 11  LDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTYVTM 65
           LDH V  VGYG  +DG  YW VKNSW   WG +GY+ M      K+  CG+    +Y   
Sbjct: 160 LDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIK 219

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score = 83.0 bits (206), Expect = 5e-22
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM 65
           LDHAV AVGYG  DGK Y  +KNSW   WG +GY+ +  +  N    CGV  +  Y   
Sbjct: 157 LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK 215

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score = 81.8 bits (203), Expect = 1e-21
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVT 64
            +H V+ VGYG   GK YW V+NSW   WGNQGY+ M     +    CG+   P+Y T
Sbjct: 156 QNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score = 81.8 bits (203), Expect = 1e-21
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTY 62
            +HA+  VGYG  + K +W VKNSW   WG  GY+         D  CG+    +Y
Sbjct: 159 ANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 214

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score = 81.9 bits (203), Expect = 2e-21
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 14/69 (20%)

Query: 11  LDHAVLAVGYG----------ELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGV 56
            +HAV+ VGYG           ++   Y+ +KNSW + WG  GY+ +          C +
Sbjct: 174 PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSI 233

Query: 57  MTAPTYVTM 65
            T      +
Sbjct: 234 GTEAYVPLL 242

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score = 80.6 bits (200), Expect = 5e-21
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTYVTM 65
            DHAV AVGYG    K Y  +KNSW   WG +GY+ +          CGV T+  +   
Sbjct: 157 TDHAVTAVGYG----KTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK 211

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score = 78.8 bits (195), Expect = 3e-20
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 14/69 (20%)

Query: 11  LDHAVLAVGYG----------ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGV 56
           L+HAV+ VG+G          + +   Y+ +KNSW   WG +G++ +   ++     CG+
Sbjct: 172 LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGL 231

Query: 57  MTAPTYVTM 65
            T      +
Sbjct: 232 GTDAFIPLI 240

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score = 78.9 bits (195), Expect = 5e-20
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 3   KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLM--------SIKDNNC 54
             +     ++H V   G+G  DG  YW V+NSW   WG +G++ +             N 
Sbjct: 205 AEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNL 264

Query: 55  GVMTAPTY 62
            +    T+
Sbjct: 265 AIEEHCTF 272

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score = 78.5 bits (194), Expect = 5e-20
 Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 11  LDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM 65
           LDH V  VGYG   DGK YW VKNSW   WG QGY+ +          CG+    +Y   
Sbjct: 165 LDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVK 224

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score = 78.6 bits (194), Expect = 1e-19
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 3   KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           +         HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +    
Sbjct: 252 QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVA 311

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score = 79.1 bits (195), Expect = 1e-19
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   RKGHNSPDGLDHAVLAVGYGE--LDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTA 59
           R   N  +  +HAVL VGYG     G  YW VKNSW T WG  GY  +    + C + + 
Sbjct: 370 RDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESI 429

Query: 60  PTYVT 64
               T
Sbjct: 430 AVAAT 434

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score = 76.3 bits (189), Expect = 2e-19
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTY 62
           +DHAV AVGYG      Y  +KNSW T WG  GY+ +          CGV++   +
Sbjct: 157 IDHAVAAVGYG----NDYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVF 208

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score = 77.3 bits (191), Expect = 2e-19
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 3   KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           K         HA+  +G+G  +  PYW + NSW+  WG  GY  +    + C + +  T 
Sbjct: 191 KHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTA 250

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score = 76.0 bits (188), Expect = 2e-19
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)

Query: 11  LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
           +DHAV AVGYG      Y  +KNSW T WG  GY+ +     N    CG+ T+  Y
Sbjct: 157 VDHAVAAVGYG----PNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score = 77.8 bits (192), Expect = 2e-19
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 3   KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
              +      HAV  VG+G  +G PYW++ NSW+T WG  GY L+    + CG+    + 
Sbjct: 250 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSA 309

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score = 75.8 bits (187), Expect = 6e-19
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 3   KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
           +         HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+
Sbjct: 195 QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 248

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score = 72.6 bits (178), Expect = 5e-18
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 4   GHNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMT 58
             + P  +DH VL VGYG       YW VKNSW T WG  GY+L+       D  C +  
Sbjct: 153 CSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDA 212

Query: 59  APTYVTM 65
             +Y T 
Sbjct: 213 WGSYPTK 219

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score = 71.4 bits (175), Expect = 3e-17
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS-IKDNNCGVMT 58
            N      HAVL VGY   D   +++++NSW    G  GY  M     +N  +  
Sbjct: 229 KNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQLAD 281

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score = 69.2 bits (170), Expect = 9e-17
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 7   SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS--IKDNNCGVMTAPTY 62
               L+H V  VGY       YW V+NSW  YWG +GY+ M        CG+   P Y
Sbjct: 151 CGTKLNHGVTIVGYQ----ANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYY 204

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 44.1 bits (103), Expect = 3e-07
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 11  LDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMS 48
            DH +   G   + +G  Y+ VKNSW T     G    S
Sbjct: 316 DDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYAS 354

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	99.94
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	99.94
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	99.94
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	99.94
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	99.94
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	99.94
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	99.93
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	99.93
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	99.93
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	99.93
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	99.93
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	99.93
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	99.93
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	99.93
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	99.93
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	99.93
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	99.93
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	99.93
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	99.92
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	99.92
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	99.92
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	99.92
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	99.92
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	99.92
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	99.91
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	99.91
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	99.91
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	99.91
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	99.91
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	99.91
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	99.91
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	99.91
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	99.91
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	99.91
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	99.91
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	99.9
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	99.9
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	99.9
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	99.88
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	99.71
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	99.68
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	99.67
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.61
1pxv_A	183	Cysteine protease; hydrolase; 1.80A {Staphylococcu	90.83
1x9y_A	367	Cysteine proteinase; half-barrel, barrel-sandwich-	88.64
1cv8_A	174	Staphopain; cysteine protease, thiol protease, pap	88.55

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*

Probab=99.94  E-value=3.2e-27  Score=155.57  Aligned_cols=60  Identities=35%  Similarity=0.618  Sum_probs=56.7

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~v   65 (65)
                      ++....+|||+|||||.+++++|||||||||++||++|||||+|+.|.|+|++.++||+|
T Consensus       163 ~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~~~p~~  222 (222)
T 3f5v_A          163 NGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL  222 (222)
T ss_dssp             CSSSCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEEEEC
T ss_pred             CCCCccCcEEEEEEEeccCCCEEEEEEcCCCCCcccCCEEEEEcCCCeecCCCceeEEeC
Confidence            445678999999999999999999999999999999999999999999999999999986

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=99.94  E-value=4.6e-27  Score=154.57  Aligned_cols=60  Identities=43%  Similarity=0.864  Sum_probs=56.3

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~v   65 (65)
                      |++..++|||+|||||.+++.+|||||||||++||++|||||.|+.|.|+|++.++||++
T Consensus       154 c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~Cgi~~~~~~~~~  213 (214)
T 1m6d_A          154 CSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV  213 (214)
T ss_dssp             SCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTCEEEEC
T ss_pred             CCCCcCCEEEEEEEEeecCCcEEEEEEeCCCCCcccCcEEEEEcCCCccccCceeEEEEe
Confidence            445578999999999999999999999999999999999999999999999999999986

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=99.94  E-value=4.2e-27  Score=154.20  Aligned_cols=60  Identities=47%  Similarity=0.980  Sum_probs=56.1

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC-CeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~~~p~v   65 (65)
                      |++..++|||+|||||.+++++|||||||||++||++|||||+|+. |.|+|++.++||+|
T Consensus       155 ~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~r~~~n~Cgi~~~~~~p~~  215 (215)
T 3kwz_A          155 CNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             CCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEECC
T ss_pred             CCCChhhCEEEEEEEeccCCceEEEEECCcCcccccCCEEEEecCCCCccCcCCceeeeeC
Confidence            4456789999999999999999999999999999999999999986 89999999999986

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=99.94  E-value=5.9e-27  Score=153.77  Aligned_cols=59  Identities=44%  Similarity=1.031  Sum_probs=55.9

Q ss_pred             CCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC-CeeeeccccEEEEC
Q psy3964           7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM   65 (65)
Q Consensus         7 ~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~~~p~v   65 (65)
                      +....+|||+|||||.+++++|||||||||++||++|||||+|+. |.|+|++.++||+|
T Consensus       159 ~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  218 (218)
T 3ovx_A          159 CTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  218 (218)
T ss_dssp             CCSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CCcccCcEEEEEEEeccCCceEEEEECCCCCccccCCEEEEecCCCCcccccCceeeeeC
Confidence            356789999999999999999999999999999999999999987 99999999999986

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=99.94  E-value=3.7e-27  Score=155.09  Aligned_cols=60  Identities=38%  Similarity=0.829  Sum_probs=56.3

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~v   65 (65)
                      |+...++|||+|||||.+++++|||||||||++||++|||||+|+.|.|+|++.+++|+|
T Consensus       155 ~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgi~~~~~~~~~  214 (215)
T 3i06_A          155 CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV  214 (215)
T ss_dssp             CCCSCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSEEEEEE
T ss_pred             CCCCccCcEEEEEEEeccCCcEEEEEECCCCCCcccCceEEEecCCCeecCCCceeEEec
Confidence            456678999999999998899999999999999999999999999999999999999985

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=99.94  E-value=9.3e-27  Score=153.00  Aligned_cols=56  Identities=52%  Similarity=1.056  Sum_probs=53.9

Q ss_pred             CCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEE
Q psy3964           9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT   64 (65)
Q Consensus         9 ~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~   64 (65)
                      ..++|||+|||||.+++++|||||||||++||++|||||+|+.|.|||++.++||+
T Consensus       162 ~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~~~~~  217 (220)
T 8pch_A          162 DKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI  217 (220)
T ss_dssp             TTCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEEEE
T ss_pred             CcCCcEEEEEEEEccCCeeEEEEECCCCcCcccCCEEEEEcCCCccccCCCceeEe
Confidence            37899999999999999999999999999999999999999999999999999997

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A

Probab=99.93  E-value=1.7e-26  Score=152.21  Aligned_cols=59  Identities=41%  Similarity=0.856  Sum_probs=54.8

Q ss_pred             CCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCC---eeeeccccEEEEC
Q psy3964           7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN---NCGVMTAPTYVTM   65 (65)
Q Consensus         7 ~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~---~cgi~~~~~~p~v   65 (65)
                      +.+.++|||+|||||.+++++|||||||||+.||++|||||+|+.+   .|||++.++||++
T Consensus       156 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~Cgi~~~~~~p~~  217 (220)
T 3p5u_A          156 CGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPVK  217 (220)
T ss_dssp             CCCSCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCCTTCGGGTTSSCEEEEC
T ss_pred             CCCccceEEEEEEEecCCCceEEEEECCCCCCcccCCEEEEECCCCCCCccCcccccceEEE
Confidence            3456899999999999899999999999999999999999999876   9999999999985

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=99.93  E-value=1.8e-26  Score=151.72  Aligned_cols=59  Identities=41%  Similarity=0.915  Sum_probs=55.3

Q ss_pred             CCCCCCeEEEEEEEecc--CCeeEEEEEcCCCCCCCCCeEEEEeccC---CeeeeccccEEEEC
Q psy3964           7 SPDGLDHAVLAVGYGEL--DGKPYWQVKNSWSTYWGNQGYVLMSIKD---NNCGVMTAPTYVTM   65 (65)
Q Consensus         7 ~~~~~~Hav~ivG~g~~--~~~~yW~i~NSwg~~WG~~Gy~~i~~~~---~~cgi~~~~~~p~v   65 (65)
                      +...++|||+|||||.+  ++++|||||||||++||++|||||+|+.   |.|+|++.++||+|
T Consensus       161 ~~~~~~Hav~iVGyg~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~cgi~~~~~~p~~  224 (224)
T 3f75_A          161 CGTDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM  224 (224)
T ss_dssp             CCCCCCEEEEEEEEEEETTTTEEEEEEECSBCTTSTBTTEEEEESCSCTTCGGGTTSSCEEEEC
T ss_pred             CCCccCeEEEEEEEecccCCCCCEEEEECCcCcchhhCCEEEEEcCCCCCCcCcccCceeeeeC
Confidence            35678999999999987  7999999999999999999999999987   99999999999986

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=99.93  E-value=1.9e-26  Score=161.12  Aligned_cols=60  Identities=43%  Similarity=0.902  Sum_probs=56.6

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC-CeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~~~p~v   65 (65)
                      |++..++|||+|||||.+++++|||||||||+.||++|||||+|+. |.|||++.++||+|
T Consensus       269 c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~yp~v  329 (329)
T 3qt4_A          269 CNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAASYPAL  329 (329)
T ss_dssp             CCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTTTCEEEEC
T ss_pred             CCCCcCCEEEEEEEEEeeCCccEEEEEeCCCCcccCCcEEEEEeCCCCccCCCCceeEeeC
Confidence            4457899999999999999999999999999999999999999987 99999999999986

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=99.93  E-value=2e-26  Score=160.75  Aligned_cols=60  Identities=40%  Similarity=0.854  Sum_probs=56.6

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC-CeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~~~p~v   65 (65)
                      |++..++|||+|||||.+++++|||||||||+.||++|||||+|+. |.|||++.++||+|
T Consensus       271 c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~v  331 (331)
T 3qj3_A          271 CETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL  331 (331)
T ss_dssp             CCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CCCCcCCEEEEEEEEeccCCceEEEEEcCCCCCcCCCCEEEEEcCCCCccCcCCceeeeeC
Confidence            4456899999999999999999999999999999999999999987 99999999999987

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=99.93  E-value=4.4e-26  Score=150.33  Aligned_cols=58  Identities=45%  Similarity=0.947  Sum_probs=54.4

Q ss_pred             CCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           8 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      ...++|||+|||||.+++++|||||||||++||++|||||+|+.    |.|+|++.+.||++
T Consensus       153 ~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  214 (215)
T 1iwd_A          153 GTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK  214 (215)
T ss_dssp             CCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             CCcCCEEEEEEEEeccCCccEEEEEeCCCCCcCCCcEEEEEcCCCCCCCCCCccccceeeee
Confidence            34689999999999999999999999999999999999999986    89999999999986

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=99.93  E-value=5.1e-26  Score=149.89  Aligned_cols=60  Identities=50%  Similarity=0.995  Sum_probs=54.8

Q ss_pred             CCCCCCCeEEEEEEEe----ccCCeeEEEEEcCCCCCCCCCeEEEEeccC-CeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g----~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~~~p~v   65 (65)
                      |.+..++|||+|||||    .+++++|||||||||++||++|||||+|+. |.|+|++.+.||+|
T Consensus       156 c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~~n~Cgi~~~~~~p~~  220 (220)
T 2xu3_A          156 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  220 (220)
T ss_dssp             CCSSCCCEEEEEEEEEECCCSSSCCEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CCCCCCCeEEEEEEcCCccccCCCCcEEEEEeCCCCCcccCcEEEEecCCCCcCCccccceeeeC
Confidence            4445789999999999    667899999999999999999999999986 89999999999986

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=99.93  E-value=5.4e-26  Score=149.79  Aligned_cols=58  Identities=43%  Similarity=0.818  Sum_probs=54.1

Q ss_pred             CCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           8 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      .+.++|||+|||||.+++.+|||||||||++||++|||||+|+.    |.|+|++.+.||++
T Consensus       154 ~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~n~Cgi~~~~~~p~~  215 (216)
T 1ppo_A          154 GTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  215 (216)
T ss_dssp             CSCCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEEC
T ss_pred             CCCCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEEcCCCCCCCcCccccceeeEee
Confidence            34589999999999998999999999999999999999999974    89999999999986

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=99.93  E-value=3.9e-26  Score=150.80  Aligned_cols=56  Identities=45%  Similarity=0.866  Sum_probs=53.2

Q ss_pred             CCCeEEEEEEEeccC-CeeEEEEEcCCCCCCCCCeEEEEeccCC----eeeeccccEEEEC
Q psy3964          10 GLDHAVLAVGYGELD-GKPYWQVKNSWSTYWGNQGYVLMSIKDN----NCGVMTAPTYVTM   65 (65)
Q Consensus        10 ~~~Hav~ivG~g~~~-~~~yW~i~NSwg~~WG~~Gy~~i~~~~~----~cgi~~~~~~p~v   65 (65)
                      .++|||+|||||.++ +++|||||||||++||++|||||+|+.+    .|+|++.++||++
T Consensus       159 ~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~g~Cgi~~~~~~p~~  219 (222)
T 3u8e_A          159 TVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTK  219 (222)
T ss_dssp             GCCEEEEEEEEEESSTTCEEEEEECSBCTTSTBTTEEEEECSCSCTTCGGGTTSSCEEEEC
T ss_pred             cCCEEEEEEEEeecCCCCcEEEEECCCCCCcccCCEEEEEcCCCCCCCcCCccccceEEEE
Confidence            689999999999887 8999999999999999999999999876    9999999999985

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=99.93  E-value=6.3e-26  Score=149.65  Aligned_cols=58  Identities=45%  Similarity=0.851  Sum_probs=54.0

Q ss_pred             CCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           8 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      .+.++|||+|||||.+++++|||||||||++||++|||||+|+.    |.|||++.+.||++
T Consensus       154 ~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  215 (218)
T 1yal_A          154 GTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK  215 (218)
T ss_dssp             CSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEEC
T ss_pred             CCCCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEECCCCCCCCccccccceeeEEE
Confidence            34589999999999998999999999999999999999999974    89999999999985

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=99.93  E-value=7.4e-26  Score=149.56  Aligned_cols=58  Identities=36%  Similarity=0.809  Sum_probs=54.1

Q ss_pred             CCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEecc----CCeeeeccccEEEEC
Q psy3964           8 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIK----DNNCGVMTAPTYVTM   65 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~----~~~cgi~~~~~~p~v   65 (65)
                      ...++|||+|||||.+++++|||||||||++||++|||||+|+    .|.|+|++.++||++
T Consensus       156 ~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  217 (221)
T 1cqd_A          156 NISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVK  217 (221)
T ss_dssp             CCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             CCcCCeEEEEEEEcccCCCcEEEEEeCCCCCcccCCEEEEEcCCCCCCcccceeeeeeEEEe
Confidence            3468999999999999999999999999999999999999997    489999999999985

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=99.93  E-value=5.2e-26  Score=157.29  Aligned_cols=60  Identities=45%  Similarity=0.896  Sum_probs=55.7

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC-CeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~~~p~v   65 (65)
                      |++..++|||+|||||.+++++|||||||||++||++|||||+|+. |.|||++.++||++
T Consensus       246 c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cgi~~~~~~p~~  306 (310)
T 2o6x_A          246 CSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPMV  306 (310)
T ss_dssp             CCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSEEEEEE
T ss_pred             CCCCCCCEEEEEEEEeccCCceEEEEEeCCCCccCCCcEEEEEcCCCCcCCccceeeEEEe
Confidence            4445789999999999999999999999999999999999999987 89999999999985

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=99.93  E-value=6.1e-26  Score=157.18  Aligned_cols=60  Identities=47%  Similarity=0.990  Sum_probs=55.7

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEecc-CCeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIK-DNNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~-~~~cgi~~~~~~p~v   65 (65)
                      |++..++|||+|||||.+++++|||||||||++||++|||||+|+ .|.|||++.++||+|
T Consensus       254 c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~  314 (314)
T 1by8_A          254 CNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  314 (314)
T ss_dssp             CCSSCCCEEEEEEEEEEETTEEEEEEECSBTTTSTBTTEEEECCSSSCGGGTTSSCEEECC
T ss_pred             CCCCCCCeEEEEEEEeccCCceEEEEEcCCCCCcCcCCEEEEEcCCCCcCCccCeeEEeeC
Confidence            444578999999999999999999999999999999999999998 499999999999986

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=99.92  E-value=9.2e-26  Score=156.33  Aligned_cols=57  Identities=46%  Similarity=1.063  Sum_probs=54.2

Q ss_pred             CCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEecc-CCeeeeccccEEEEC
Q psy3964           9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIK-DNNCGVMTAPTYVTM   65 (65)
Q Consensus         9 ~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~-~~~cgi~~~~~~p~v   65 (65)
                      +.++|||+|||||.+++++|||||||||++||++|||||+|+ .|.|||++.++||+|
T Consensus       258 ~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~  315 (315)
T 2c0y_A          258 QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  315 (315)
T ss_dssp             SCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CcCCEEEEEEEEeecCCCcEEEEEcCCCCCcCCCcEEEEEcCCCCccCcCceeEEeeC
Confidence            378999999999999999999999999999999999999998 499999999999986

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=99.92  E-value=9.8e-26  Score=151.42  Aligned_cols=55  Identities=40%  Similarity=0.870  Sum_probs=52.9

Q ss_pred             CCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964          11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus        11 ~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      ++|||+|||||.+++++|||||||||++||++|||||+|+.    |.|+|++.++||++
T Consensus       166 ~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p~~  224 (246)
T 2b1m_A          166 INHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPII  224 (246)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCSSCTTCGGGTTSEEEEEEC
T ss_pred             CceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCCCCccccccceeeEEEe
Confidence            89999999999999999999999999999999999999986    89999999999985

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=99.92  E-value=9.1e-26  Score=156.86  Aligned_cols=58  Identities=41%  Similarity=0.776  Sum_probs=54.4

Q ss_pred             CCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           8 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      .+.++|||+|||||.+++.+|||||||||++||++|||||.|+.    |.|||++.++||++
T Consensus       260 ~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~n~CgI~~~~~yp~~  321 (322)
T 1pci_A          260 GTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  321 (322)
T ss_dssp             CSCCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSBSSCGGGGGGCCEEECC
T ss_pred             CCCCCEEEEEEEEeccCCccEEEEEeCCCCcccCCeEEEEEcCCCCCCCcCCcccceeEEEe
Confidence            34689999999999999999999999999999999999999985    89999999999986

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=99.92  E-value=1.5e-25  Score=155.36  Aligned_cols=60  Identities=48%  Similarity=0.970  Sum_probs=55.2

Q ss_pred             CCCCCCCeEEEEEEEe---cc-CCeeEEEEEcCCCCCCCCCeEEEEeccC-CeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYG---EL-DGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g---~~-~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~~~p~v   65 (65)
                      |++..++|||+|||||   .+ ++++|||||||||++||++|||||+|+. |.|||++.++||+|
T Consensus       252 c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~  316 (316)
T 1cs8_A          252 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  316 (316)
T ss_dssp             CCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             CCCCCCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCcccCCEEEEECCCCCccCccceeeEeeC
Confidence            4445789999999999   77 7999999999999999999999999986 89999999999986

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=99.92  E-value=2.4e-25  Score=147.91  Aligned_cols=58  Identities=41%  Similarity=0.833  Sum_probs=53.5

Q ss_pred             CCCCCeEEEEEEEeccC-CeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           8 PDGLDHAVLAVGYGELD-GKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~-~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      ...++|||+|||||.+. +++|||||||||++||++|||||+|+.    |.|+|++.+.||++
T Consensus       157 ~~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  219 (229)
T 1s4v_A          157 GTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIK  219 (229)
T ss_dssp             CCCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             CCCCCeEEEEEEeccccCCCCEEEEEeCCCCCccCCcEEEEEcCCCCCCCcCcccccceeeEe
Confidence            34689999999999876 899999999999999999999999974    89999999999985

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=99.92  E-value=2.7e-25  Score=154.26  Aligned_cols=56  Identities=36%  Similarity=0.675  Sum_probs=53.5

Q ss_pred             CCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEEC
Q psy3964           9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM   65 (65)
Q Consensus         9 ~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~v   65 (65)
                      .. +|||+|||||.+++++|||||||||++||++|||||+|+.|.|||++.++||++
T Consensus       247 ~~-~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~n~CgI~~~~~~~~~  302 (312)
T 1xkg_A          247 PN-YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL  302 (312)
T ss_dssp             CE-EEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEEC
T ss_pred             cC-ceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCcccccceeEEeec
Confidence            35 999999999999999999999999999999999999999999999999999985

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=99.91  E-value=3.6e-25  Score=147.99  Aligned_cols=56  Identities=32%  Similarity=0.759  Sum_probs=52.1

Q ss_pred             CCCeEEEEEEEeccC----------CeeEEEEEcCCCCCCCCCeEEEEeccCCe----eeeccccEEEEC
Q psy3964          10 GLDHAVLAVGYGELD----------GKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM   65 (65)
Q Consensus        10 ~~~Hav~ivG~g~~~----------~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~----cgi~~~~~~p~v   65 (65)
                      .++|||+|||||.+.          +.+|||||||||++||++|||||+|+.+.    |||++.+.||++
T Consensus       171 ~~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~  240 (241)
T 2oul_A          171 QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI  240 (241)
T ss_dssp             SCCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEEEEC
T ss_pred             CCCEEEEEEEeccccccccccccCCCCCEEEEEeCCCCCcccCCEEEEEcCCCCCCCcCCccceEEEEee
Confidence            389999999999875          78999999999999999999999998776    999999999986

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=99.91  E-value=4.2e-25  Score=147.80  Aligned_cols=56  Identities=36%  Similarity=0.732  Sum_probs=52.1

Q ss_pred             CCCeEEEEEEEeccC----------CeeEEEEEcCCCCCCCCCeEEEEeccCCe----eeeccccEEEEC
Q psy3964          10 GLDHAVLAVGYGELD----------GKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM   65 (65)
Q Consensus        10 ~~~Hav~ivG~g~~~----------~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~----cgi~~~~~~p~v   65 (65)
                      .++|||+|||||.+.          +.+|||||||||++||++|||||+|+.+.    |||++.++||++
T Consensus       173 ~~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~  242 (243)
T 3bwk_A          173 APNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLL  242 (243)
T ss_dssp             SCCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEEEEC
T ss_pred             cCCeEEEEEEecCccccccccccCCCCCEEEEEeCCCCCcCCCcEEEEEcCCCCCCCcCCccceEEEEec
Confidence            389999999999875          78999999999999999999999998776    999999999986

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=99.91  E-value=6.9e-25  Score=144.08  Aligned_cols=56  Identities=41%  Similarity=0.827  Sum_probs=51.4

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      ++...++|||+|||||.    +|||||||||++||++|||||+|+.    |.|||++.++||++
T Consensus       152 ~~~~~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  211 (213)
T 3ioq_A          152 PCGTSIDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK  211 (213)
T ss_dssp             SCCSCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEESSCSSTTCGGGTTSCCEEEEC
T ss_pred             CCCCccCceEEEEecCC----CeEEEECCCCCCcccCCeEEEEcCCCCCCCcccccCcceEeEe
Confidence            34567899999999996    7999999999999999999999986    89999999999985

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=99.91  E-value=8.4e-25  Score=148.68  Aligned_cols=58  Identities=45%  Similarity=0.934  Sum_probs=52.7

Q ss_pred             CCCCCeEEEEEEEecc-CCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           8 PDGLDHAVLAVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~-~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      .+.++|||+|||||.+ ++++|||||||||++||++|||||+|+.    +.|||++.+.||++
T Consensus       162 ~~~~~HaV~IVGyg~~~~G~~YWivkNSWG~~WGe~GY~ri~r~~n~~~~~CgI~~~~~~p~~  224 (262)
T 2fo5_A          162 GTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVK  224 (262)
T ss_dssp             CCCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEESSCSCTTCGGGTTTSCEEEEC
T ss_pred             CCcCCEEEEEEEEcccCCCceEEEEEeCCCCCCCCCeEEEEEcCCCCCCCccceeeeeeEEEe
Confidence            3468999999999987 5899999999999999999999999975    45999999999985

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=99.91  E-value=4.5e-25  Score=153.67  Aligned_cols=56  Identities=38%  Similarity=0.773  Sum_probs=52.2

Q ss_pred             CCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEE
Q psy3964           9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT   64 (65)
Q Consensus         9 ~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~   64 (65)
                      ...+|||+|||||++++.+|||||||||++||++|||||+|+.|+|||++.++.++
T Consensus       256 ~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~~~~~g~  311 (325)
T 3hhi_A          256 YLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGI  311 (325)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCEEEEE
T ss_pred             CCCCEEEEEEEEEecCCceEEEEEeCCCCCcccCCEEEEEcCCCeecCccceEEee
Confidence            34599999999999999999999999999999999999999999999999988764

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=99.91  E-value=4.1e-25  Score=149.21  Aligned_cols=56  Identities=32%  Similarity=0.716  Sum_probs=52.3

Q ss_pred             CCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEE
Q psy3964           9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT   64 (65)
Q Consensus         9 ~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~   64 (65)
                      ...+|||+|||||.+++.+|||||||||+.||++|||||+|+.|.|+|++.+++++
T Consensus       201 ~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgI~~~~~~~~  256 (266)
T 3cbj_A          201 MMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI  256 (266)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECC
T ss_pred             ccCCeEEEEEEecccCCceEEEEEcCCCCccCCCCEEEEEcCCCcccccCceEEEE
Confidence            34589999999999999999999999999999999999999999999999998875

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=99.91  E-value=1.1e-24  Score=148.45  Aligned_cols=58  Identities=29%  Similarity=0.653  Sum_probs=54.1

Q ss_pred             CCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCC--------eeeeccccEEEE
Q psy3964           7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN--------NCGVMTAPTYVT   64 (65)
Q Consensus         7 ~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~--------~cgi~~~~~~p~   64 (65)
                      +...++|||+|||||.+++++|||||||||++||++|||||+|+.|        +|+|++.+.+++
T Consensus       209 ~~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~cgIe~~~~~~~  274 (277)
T 1deu_A          209 DTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGD  274 (277)
T ss_dssp             SCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTTSCEEEEE
T ss_pred             CCCcCCeEEEEEEecccCCccEEEEEeCCCCccCCCcEEEEEcCCCcccccccccceeccccEeec
Confidence            4457899999999999999999999999999999999999999988        999999999875

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=99.91  E-value=6.4e-25  Score=152.21  Aligned_cols=56  Identities=32%  Similarity=0.716  Sum_probs=51.6

Q ss_pred             CCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEE
Q psy3964           8 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV   63 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p   63 (65)
                      ....+|||+|||||.+++.+|||||||||++||++|||||.|+.|+|||++.++.+
T Consensus       257 ~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~ri~rg~n~CgI~~~~~a~  312 (317)
T 3pbh_A          257 EMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG  312 (317)
T ss_dssp             CEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEEC
T ss_pred             CCCCCEEEEEEEEEEeCCeeEEEEEcCCCCCcCCCcEEEEEcCCCcccCCCceEee
Confidence            33459999999999999999999999999999999999999999999999988764

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=99.91  E-value=1.6e-24  Score=142.36  Aligned_cols=54  Identities=43%  Similarity=0.820  Sum_probs=50.2

Q ss_pred             CCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           8 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      .+.++|||+|||||.    +|||||||||++||++|||||+|+.    |.|||++.+.||++
T Consensus       154 ~~~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (212)
T 2cio_A          154 GNKVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK  211 (212)
T ss_dssp             CSCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECSSSCTTCGGGTTSCCEEEEC
T ss_pred             CCCCCEEEEEEEecC----CeEEEEeCCCCCcccCcEEEEEcCCCCCCCccCcccceeEEEe
Confidence            346899999999997    7999999999999999999999985    89999999999986

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=99.91  E-value=9.8e-25  Score=146.41  Aligned_cols=57  Identities=28%  Similarity=0.641  Sum_probs=52.4

Q ss_pred             CCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEE
Q psy3964           8 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT   64 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~   64 (65)
                      ....+|||+|||||.+++++|||||||||+.||++|||||+|+.|+|+|++.+...+
T Consensus       196 ~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~rg~n~CgI~~~~~~~~  252 (254)
T 3qsd_A          196 ETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTAGR  252 (254)
T ss_dssp             CEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSSEEEEE
T ss_pred             CCCCCeEEEEEEEeecCCeeEEEEEeCCCCCcccCCeEEEEcCCCeecCCCceEeec
Confidence            344689999999999999999999999999999999999999999999999988654

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=99.91  E-value=1.8e-24  Score=141.98  Aligned_cols=54  Identities=43%  Similarity=0.911  Sum_probs=50.4

Q ss_pred             CCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC--CeeeeccccEEEEC
Q psy3964           8 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD--NNCGVMTAPTYVTM   65 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~--~~cgi~~~~~~p~v   65 (65)
                      ...++|||+|||||.    +|||||||||++||++|||||+|+.  |.|+|++.++||++
T Consensus       152 ~~~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~Cgi~~~~~~p~~  207 (208)
T 1o0e_A          152 GTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPTK  207 (208)
T ss_dssp             CSCCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEEC
T ss_pred             CCcCCEEEEEEEeCC----CeEEEEcCCCCcccCCcEEEEEcCCCCCcCCCcccceeeec
Confidence            346899999999997    8999999999999999999999986  89999999999986

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=99.90  E-value=3.7e-24  Score=141.01  Aligned_cols=54  Identities=41%  Similarity=0.831  Sum_probs=50.1

Q ss_pred             CCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           8 PDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      .+.++|||+|||||.    +|||||||||++||++|||||+|+.    |.|+|++.+.||++
T Consensus       154 ~~~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (214)
T 2bdz_A          154 GTNTDHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK  211 (214)
T ss_dssp             CSCCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCCSBSSCGGGTTSCEEEEEC
T ss_pred             CCCCCeEEEEEEcCC----CeEEEEeCCCCCcccCCEEEEEcCCCCCCCcccccccceEEEe
Confidence            346899999999997    8999999999999999999999975    89999999999985

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=99.90  E-value=3.7e-24  Score=151.56  Aligned_cols=55  Identities=40%  Similarity=0.806  Sum_probs=49.6

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEE
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVT   64 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~   64 (65)
                      ++...+||||+|||||.    +|||||||||+.||++|||||.|+.    |.|||++.++||+
T Consensus       303 ~~~~~lnHaV~iVGyG~----~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~~a~yPi  361 (363)
T 3tnx_A          303 PCGNKVDHAVAAVGYGP----NYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV  361 (363)
T ss_dssp             CCCSCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCSSCGGGTTSCEEEEE
T ss_pred             CCCCCCCeEEEEEEcCC----CcEEEEeCCCCccccCcEEEEEcCCCCCCCcCCccceeeecc
Confidence            34567899999999996    4999999999999999999999976    4599999999997

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=99.90  E-value=7.8e-24  Score=142.17  Aligned_cols=58  Identities=41%  Similarity=0.892  Sum_probs=48.3

Q ss_pred             CCCCCCCeEEEEEEEecc---CC--eeEEEEEcCCCCCCCCCeEEEEec-cCCeeeeccccEEE
Q psy3964           6 NSPDGLDHAVLAVGYGEL---DG--KPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYV   63 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~---~~--~~yW~i~NSwg~~WG~~Gy~~i~~-~~~~cgi~~~~~~p   63 (65)
                      |....++|||+|||||.+   ++  ++|||||||||++||++|||||++ +.|.|+|+..+.++
T Consensus       193 c~~~~~~HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g~n~Cgi~~~~~~~  256 (265)
T 2wbf_X          193 CGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVV  256 (265)
T ss_dssp             CCCSCCCEEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEESSCCTTCSSCSCCEEE
T ss_pred             CCCCcCCEEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEecCCCccCcceeEEEE
Confidence            444578999999999985   55  699999999999999999999986 67899966554443

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=99.88  E-value=3.8e-23  Score=149.20  Aligned_cols=56  Identities=41%  Similarity=0.809  Sum_probs=51.3

Q ss_pred             CCCCeEEEEEEEecc--CCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEE
Q psy3964           9 DGLDHAVLAVGYGEL--DGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT   64 (65)
Q Consensus         9 ~~~~Hav~ivG~g~~--~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~   64 (65)
                      ..++|||+|||||.+  ++++|||||||||++||++|||||+|+.|+|||++.++.+.
T Consensus       377 ~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI~s~~~a~~  434 (441)
T 3pdf_A          377 ELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT  434 (441)
T ss_dssp             CCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCCEEEE
T ss_pred             CcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCCCccCCCCceEEee
Confidence            358999999999975  68999999999999999999999999999999999888653

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=99.71  E-value=4e-18  Score=116.30  Aligned_cols=38  Identities=39%  Similarity=0.737  Sum_probs=35.1

Q ss_pred             CCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEecc
Q psy3964          11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIK   50 (65)
Q Consensus        11 ~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~   50 (65)
                      .+|||+|||||  ++++|||||||||+.||++|||||+++
T Consensus       235 ~~Hav~iVGy~--~~~~ywivkNSWG~~WG~~Gy~~i~~~  272 (291)
T 3ois_A          235 GGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYE  272 (291)
T ss_dssp             EEEEEEEEEEE--TTTTEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             CCeEEEEEEEe--CCCCEEEEEeCCCCCCCCCcEEEEEHH
Confidence            48999999998  457899999999999999999999985

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=99.68  E-value=2.3e-17  Score=119.88  Aligned_cols=43  Identities=28%  Similarity=0.393  Sum_probs=39.1

Q ss_pred             CCCCCeEEEEEEEecc-CCe--eEEEEEcCCCCCCCCCeEEEEecc
Q psy3964           8 PDGLDHAVLAVGYGEL-DGK--PYWQVKNSWSTYWGNQGYVLMSIK   50 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~~-~~~--~yW~i~NSwg~~WG~~Gy~~i~~~   50 (65)
                      .+.++|||+|||||.+ +++  +||+||||||++||++||++|+++
T Consensus       368 ~s~~~HAmlivGyg~d~~G~~p~yW~VkNSWG~~wG~~GY~~ms~~  413 (457)
T 2e01_A          368 ESLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQK  413 (457)
T ss_dssp             SCCCCEEEEEEEEEECTTTCCEEEEEEECSSCTTSTBTTEEEEEHH
T ss_pred             CCCCCeEEEEEEEEeccCCCccCEEEEEeCccCCcCCCceEEeehh
Confidence            3478999999999986 687  899999999999999999999974

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=99.67  E-value=6.2e-17  Score=117.56  Aligned_cols=42  Identities=31%  Similarity=0.612  Sum_probs=38.6

Q ss_pred             CCCCeEEEEEEEe--cc-CCe-eEEEEEcCCCCCCCCCeEEEEecc
Q psy3964           9 DGLDHAVLAVGYG--EL-DGK-PYWQVKNSWSTYWGNQGYVLMSIK   50 (65)
Q Consensus         9 ~~~~Hav~ivG~g--~~-~~~-~yW~i~NSwg~~WG~~Gy~~i~~~   50 (65)
                      +.+||||+|||||  .+ +++ +||+||||||++||++||++|+++
T Consensus       367 s~~~HAmlivGyg~~~d~~G~~~yWiVkNSWG~~wG~~GY~~ms~~  412 (453)
T 2cb5_A          367 SLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDE  412 (453)
T ss_dssp             CCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             CCCCeEEEEEEeccccccCCCccEEEEEcCcCCCcCcCceEEechh
Confidence            4789999999999  76 677 999999999999999999999874

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.61  E-value=4.3e-16  Score=111.28  Aligned_cols=42  Identities=31%  Similarity=0.446  Sum_probs=38.4

Q ss_pred             CCCCCeEEEEEEEec-cCCeeEEEEEcCCCCCCCCCeEEEEec
Q psy3964           8 PDGLDHAVLAVGYGE-LDGKPYWQVKNSWSTYWGNQGYVLMSI   49 (65)
Q Consensus         8 ~~~~~Hav~ivG~g~-~~~~~yW~i~NSwg~~WG~~Gy~~i~~   49 (65)
                      .+.+||||+|||||. +++++||+||||||++||++||++|++
T Consensus       313 ~t~~~Ha~~ivG~~~d~~g~~yw~vkNSWg~~~g~~Gy~~m~~  355 (383)
T 3pw3_A          313 ETTDDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYASK  355 (383)
T ss_dssp             SSCCEEEEEEEEEEECTTCCEEEEEECSBCSCSTTTTEEEEEH
T ss_pred             cCcCCeEEEEEEEEEcCCCceEEEEEeCCCCCCCcCCeEEecH
Confidence            356799999999997 568899999999999999999999986

>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A

Probab=90.83  E-value=1.5  Score=28.64  Aligned_cols=46  Identities=17%  Similarity=0.265  Sum_probs=33.2

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeee
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV   56 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi   56 (65)
                      .+.....||++|+||...++.++.++=|=|..     +++.++..++...+
T Consensus       123 ~~~~~~gHA~av~Gya~~~~~~~y~~WNPW~~-----~~~~~~a~S~~i~l  168 (183)
T 1pxv_A          123 PNDPHLGHALAVVGNAKINDQEKLIYWNPWDT-----ELSIQDADSSLLHL  168 (183)
T ss_dssp             TTSCCCEEEEEEEEEEEETTEEEEEEECTTCS-----SCEEEETTCCEEEE
T ss_pred             CCCccCceeEEEEeeeecCCCeEEEEeCCccC-----CcEeecCCCCeEEe
Confidence            33447889999999998778899999886633     67777655443333

>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4

Probab=88.64  E-value=1.1  Score=32.08  Aligned_cols=42  Identities=19%  Similarity=0.323  Sum_probs=29.9

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN   52 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~   52 (65)
                      .++....|||+|+||...++.+|..+=|=|-.     +++.++..++
T Consensus       299 ~n~~~~gHAlavvGyA~~~~~~~y~~WNPW~~-----~~~~~sa~S~  340 (367)
T 1x9y_A          299 PNDPHLGHALAVVGNAKINDQEKLIYWNPWDT-----ELSIQDADSS  340 (367)
T ss_dssp             SSSCCCSEEEEEEEEEEETTEEEEEEECTTCS-----SCEEEETTCC
T ss_pred             CCCccCceeEEEEeccccCCCcEEEEecCccC-----CceeecCCCC
Confidence            44557899999999987668899888786633     3666555333

>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1

Probab=88.55  E-value=0.71  Score=29.89  Aligned_cols=30  Identities=23%  Similarity=0.374  Sum_probs=23.7

Q ss_pred             CCCCCCeEEEEEEEec-cCCeeEEEEEcCCC
Q psy3964           7 SPDGLDHAVLAVGYGE-LDGKPYWQVKNSWS   36 (65)
Q Consensus         7 ~~~~~~Hav~ivG~g~-~~~~~yW~i~NSwg   36 (65)
                      ......||++|+||.. .++.+|..+=|=|-
T Consensus       114 ~~~~~gHAlav~Gy~~~~ng~~~y~~WNPW~  144 (174)
T 1cv8_A          114 NGMHAGHAMAVVGNAKLNNGQEVIIIWNPWD  144 (174)
T ss_dssp             TTBCCEEEEEEEEEEEETTSCEEEEEECTTC
T ss_pred             CCCCCceeEEEEeeeeecCCceEEEEeCCcc
Confidence            3447789999999986 46789988888663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	65
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	1e-18
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	1e-16
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	1e-15
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	2e-15
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	4e-15
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	1e-14
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	6e-14
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	1e-13
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	2e-13
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	3e-13
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	3e-13
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	1e-12
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	1e-12
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	1e-11
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	1e-11
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	2e-11
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	5e-11
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	9e-11
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	1e-10
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	9e-09
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	9e-08
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	4e-07

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 74.3 bits (181), Expect = 1e-18
 Identities = 21/61 (34%), Positives = 27/61 (44%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 64
            N      HAV  VGY    G  YW V+NSW T WG+ GY   +   +   +   P  V 
Sbjct: 239 DNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVI 298

Query: 65  M 65
           +
Sbjct: 299 L 299

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 1e-16
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 1   MRKGHNSPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCG 55
             +   S + +DH VL VGYG    E D   YW VKNSW   WG  GYV M+  + N+CG
Sbjct: 247 YFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 306

Query: 56  VMTAPTYVTM 65
           + +A +Y T+
Sbjct: 307 IASAASYPTV 316

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 1e-15
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 13  HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
           HA+  +G+G  +G PYW V NSW+T WG+ G+  +    ++CG+ +    
Sbjct: 200 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVA 249

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 4e-15
 Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYV 63
            +    ++H VL VGYG+L+GK YW VKNSW   +G +GY+ M+  K N+CG+ + P+Y 
Sbjct: 156 PSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215

Query: 64  TM 65
            +
Sbjct: 216 EI 217

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 1e-14
 Identities = 26/59 (44%), Positives = 33/59 (55%)

Query: 4   GHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
              SP  +DHAVL VGYG+    P+W +KNSW T WG +GY  +      CGV T  + 
Sbjct: 152 PLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 210

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 60.8 bits (146), Expect = 6e-14
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
               + LDH VL VGY +    PYW +KNSW+T WG +GY+ ++   N C V    + 
Sbjct: 154 SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 60.4 bits (145), Expect = 1e-13
 Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAP 60
                 LDHAV AVGYG  DGK Y  +KNSW   WG +GY+ +  +  N    CGV  + 
Sbjct: 151 GPCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSS 210

Query: 61  TY 62
            Y
Sbjct: 211 YY 212

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 2e-13
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 1   MRKGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCG 55
           +   +     ++H V   G+G  DG  YW V+NSW   WG +G++ +       G
Sbjct: 201 IYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDG 255

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 3e-13
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 1   MRKGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTA 59
                 + D L+HAVLAVGYG   G  +W +KNSW   WGN+GY+LM+  K+N CG+   
Sbjct: 150 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 209

Query: 60  PTYVTM 65
            ++  M
Sbjct: 210 ASFPKM 215

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 57.7 bits (138), Expect = 1e-12
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAP 60
                 +DHAV AVGYG+  GK Y  +KNSW T WG +GY+ +     N    CG+  + 
Sbjct: 151 GPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSS 210

Query: 61  TYVT 64
            Y T
Sbjct: 211 YYPT 214

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 57.3 bits (137), Expect = 1e-12
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS---IKDNNCGVMTAPT 61
                 +DHAV  VGYG   G  YW VKNSW T WG +GY+ +         CG+ T P+
Sbjct: 154 GPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPS 213

Query: 62  Y 62
           Y
Sbjct: 214 Y 214

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 54.6 bits (130), Expect = 1e-11
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 5   HNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTA 59
            +    LDH V  VGYG  +DG  YW VKNSW   WG +GY+ M      K+  CG+   
Sbjct: 154 GSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAME 213

Query: 60  PTY 62
            +Y
Sbjct: 214 ASY 216

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 54.6 bits (130), Expect = 1e-11
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAP 60
            +     +HA+  VGYG  + K +W VKNSW   WG  GY+         D  CG+    
Sbjct: 151 GSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFA 210

Query: 61  TY 62
           +Y
Sbjct: 211 SY 212

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 54.2 bits (129), Expect = 2e-11
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 5   HNSPDGLDHAVLAVGYG----------ELDGKPYWQVKNSWSTYWGNQGYVLMS----IK 50
               D L+HAV+ VG+G          + +   Y+ +KNSW   WG +G++ +       
Sbjct: 166 GECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGL 225

Query: 51  DNNCGVMTAPTYVTM 65
              CG+ T      +
Sbjct: 226 MRKCGLGTDAFIPLI 240

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 5e-11
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 1   MRKGHNSPDGLDHAVLAVGY----GELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCG 55
             +   S   LDH VL VGY       D   YW VKNSW   WG+ GYV ++  K+N+CG
Sbjct: 152 YFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCG 211

Query: 56  VMTAPTYVTM 65
           + TA +Y  +
Sbjct: 212 IATAASYPNV 221

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 52.3 bits (124), Expect = 9e-11
 Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAP 60
                  +H V+ VGYG   GK YW V+NSW   WGNQGY+ M          CG+   P
Sbjct: 150 GPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLP 209

Query: 61  TYVT 64
           +Y T
Sbjct: 210 SYPT 213

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 51.9 bits (123), Expect = 1e-10
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS--IKDNNCGVMTAPTY 62
                 L+H V  VGY       YW V+NSW  YWG +GY+ M        CG+   P Y
Sbjct: 149 GPCGTKLNHGVTIVGYQ----ANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYY 204

Query: 63  VT 64
            T
Sbjct: 205 PT 206

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 47.0 bits (110), Expect = 9e-09
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 5   HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAP 60
               + +DHAV AVGYG      Y  +KNSW T WG  GY+ +     N    CG+ T+ 
Sbjct: 151 GPCGNKVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSS 206

Query: 61  TY 62
            Y
Sbjct: 207 FY 208

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 44.2 bits (104), Expect = 9e-08
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 11  LDHAVLAVGYG--ELDGKP-YWQVKNSWSTYWGNQGYVLMS 48
           + HA+L  G    E    P  ++V+NSW    G  G  +M+
Sbjct: 372 MTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMT 412

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 4e-07
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 12  DHAVLAVGYG---ELDGKP-YWQVKNSWSTYWGNQGYVLMS 48
            HA+         + DG    W+V+NSW    G++GY+ M+
Sbjct: 370 THAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMT 410

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	65
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	99.95
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	99.95
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	99.94
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	99.94
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	99.94
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	99.93
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	99.93
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	99.93
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	99.93
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	99.92
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	99.92
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	99.92
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	99.91
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	99.91
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	99.91
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	99.91
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	99.91
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	99.91
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	99.9
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	99.18
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	99.03
d1cv8a_	173	Staphopain StpA {Staphylococcus aureus [TaxId: 128	92.36
d1pxva_	183	Staphopain SspB {Staphylococcus aureus [TaxId: 128	92.17

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.95  E-value=3.3e-28  Score=155.49  Aligned_cols=61  Identities=38%  Similarity=0.814  Sum_probs=57.4

Q ss_pred             CCCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEEC
Q psy3964           5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM   65 (65)
Q Consensus         5 ~~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~v   65 (65)
                      .+++...+|||+|||||.+++++|||||||||++||++|||||+|+.|.|+|+++++||+|
T Consensus       154 ~~~~~~~~Hav~IVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~g~n~cgI~~~~~~~~~  214 (215)
T d1me4a_         154 SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV  214 (215)
T ss_dssp             SCCCSCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSEEEEEC
T ss_pred             CCccccceeEEEEEEccccCCceEEEEEcCCCCCcccCCEEEEECCCCccccCCceeeEec
Confidence            3556678999999999999999999999999999999999999999999999999999987

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.2e-28  Score=153.85  Aligned_cols=61  Identities=43%  Similarity=0.996  Sum_probs=56.7

Q ss_pred             CCCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC-CeeeeccccEEEEC
Q psy3964           5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM   65 (65)
Q Consensus         5 ~~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~~~p~v   65 (65)
                      +++....+|||+|||||.+.+++|||||||||++||++|||||+|+. |.|+|++.++||+|
T Consensus       156 ~~~~~~~~Hav~iVGy~~~~~~~ywivrNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  217 (217)
T d2h7ja1         156 PSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  217 (217)
T ss_dssp             TTCCSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CCCCCCCCeEEEEEecccCCCceEEEEEcCCCCCcccCCEEEEecCCCCcCCccccccceeC
Confidence            44566789999999999999999999999999999999999999986 99999999999997

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.6e-28  Score=153.50  Aligned_cols=61  Identities=43%  Similarity=0.839  Sum_probs=57.0

Q ss_pred             CCCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEEC
Q psy3964           5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM   65 (65)
Q Consensus         5 ~~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~v   65 (65)
                      .++....+|||+|||||.+.+.+|||||||||++||++|||||+++.|.|+|+++++||+|
T Consensus       153 ~~~~~~~~HaV~iVGyg~~~~~~ywivkNSWG~~WGd~Gy~~i~~g~n~cgI~~~~~~~~~  213 (214)
T d1m6da_         153 LCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV  213 (214)
T ss_dssp             GSCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTCEEEEC
T ss_pred             CCCCcccceeEEEEcccccCCceEEEEECCCCCccccCCEEEEEcCCCcccccceeeEEec
Confidence            3455678999999999999999999999999999999999999999999999999999986

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-27  Score=161.63  Aligned_cols=61  Identities=48%  Similarity=0.936  Sum_probs=55.5

Q ss_pred             CCCCCCCCeEEEEEEEecc----CCeeEEEEEcCCCCCCCCCeEEEEeccC-CeeeeccccEEEEC
Q psy3964           5 HNSPDGLDHAVLAVGYGEL----DGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM   65 (65)
Q Consensus         5 ~~~~~~~~Hav~ivG~g~~----~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~~~p~v   65 (65)
                      .|+...+||||+|||||.+    ++.+|||||||||++|||+|||||+|+. |.|||++.++||+|
T Consensus       251 ~c~~~~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WGe~GY~ri~r~~~n~CGI~~~~~yP~v  316 (316)
T d1cs8a_         251 DCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  316 (316)
T ss_dssp             TCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             CCCCCcCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcccCCEEEEeeCCCCcCccCCeeeeeeC
Confidence            4566789999999999965    5889999999999999999999999974 89999999999987

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=99.94  E-value=2.6e-27  Score=160.27  Aligned_cols=61  Identities=34%  Similarity=0.610  Sum_probs=56.3

Q ss_pred             CCCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEEC
Q psy3964           5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM   65 (65)
Q Consensus         5 ~~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~v   65 (65)
                      .|+....+|||+|||||.+++.+|||||||||++||++|||||+|+.|.|||++++++|+|
T Consensus       239 ~~~~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~~~~n~cgi~~~~~~~~~  299 (302)
T d1xkga1         239 DNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL  299 (302)
T ss_dssp             CCSSCCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEEC
T ss_pred             CCCCCcCCEEEEEEEEeccCCeEEEEEEcCCCCchhcCCEEEEECCCCeeccCCCcEEEEe
Confidence            3445556799999999999999999999999999999999999999999999999999986

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=99.93  E-value=6.4e-27  Score=149.45  Aligned_cols=60  Identities=43%  Similarity=0.885  Sum_probs=55.2

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEec---cCCeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI---KDNNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~---~~~~cgi~~~~~~p~v   65 (65)
                      +..+..+|||+|||||.+++++|||||||||++||++|||+|+|   +.|.|||+++++||+.
T Consensus       155 ~~~~~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~Cgi~~~~~~~~~  217 (218)
T d1aeca_         155 PCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPVK  217 (218)
T ss_dssp             SCCSSCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSTTCGGGTTSSCEEEEC
T ss_pred             cccccCCceeEEEEEeccCCeEEEEEEcCCCCCcccCCEEEEEeCCCCCcccccCCcceeccc
Confidence            45567899999999999999999999999999999999999998   4689999999999984

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-26  Score=147.37  Aligned_cols=61  Identities=46%  Similarity=0.963  Sum_probs=56.9

Q ss_pred             CCCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC-CeeeeccccEEEEC
Q psy3964           5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM   65 (65)
Q Consensus         5 ~~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~~~p~v   65 (65)
                      .++....+|||+|||||.+.+.+|||||||||++||++|||||+++. |.|||++.+.||.|
T Consensus       154 ~~~~~~~~Hav~iVGy~~~~~~~ywivrNSWG~~WGe~Gy~~i~~~~~n~Cgi~~~~~~p~~  215 (215)
T d2r6na1         154 SCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             TCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEEEC
T ss_pred             CCCCCCCCeeEEEEEeeccCCCcEEEEEcCCCCCcccCCeEEEEeCCCCcCcccCccccccC
Confidence            45667899999999999998999999999999999999999999986 89999999999986

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.93  E-value=2.4e-26  Score=147.27  Aligned_cols=60  Identities=43%  Similarity=0.819  Sum_probs=54.5

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      ++....+|||+|||||.+++++|||||||||++||++|||||+|+.    +.|||++.++||+.
T Consensus       152 ~~~~~~~Hav~IVGyg~~~g~~ywivkNSWG~~WGd~Gy~~I~~~~~~~~~~CGI~~~~~~p~~  215 (218)
T d1yala_         152 PCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK  215 (218)
T ss_dssp             SCCSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEEC
T ss_pred             cccccCCcEEEEEEeeccCCceEEEEECCCCCCcccCCEEEEEccCCCCCCcCCccceeeeccC
Confidence            3445689999999999999999999999999999999999999964    68999999999974

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.93  E-value=4.3e-26  Score=145.64  Aligned_cols=60  Identities=42%  Similarity=0.787  Sum_probs=54.5

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      ++...++|||+|||||.+.+++|||||||||++||++|||||+++.    +.|||++.++||++
T Consensus       152 ~~~~~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  215 (216)
T d1ppoa_         152 PCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  215 (216)
T ss_dssp             SCCSCCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEEC
T ss_pred             cccccCCcEEEEEeccccCCCceEEEECCCCCCcccCCEEEEEcCCCCCCCcCccccEeeeeec
Confidence            3455689999999999999999999999999999999999999975    56999999999985

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-26  Score=150.25  Aligned_cols=59  Identities=31%  Similarity=0.682  Sum_probs=54.2

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeeccccEEEE
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT   64 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~~~~~p~   64 (65)
                      +.....+|||+|||||.+++.+|||||||||++||++|||||+|+.|.|||++++++++
T Consensus       193 ~~~~~~~Hav~IVGyg~~~g~~ywIvkNSWG~~WGd~GYf~i~~~~n~cgi~~~~~~~~  251 (254)
T d1gmya_         193 TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI  251 (254)
T ss_dssp             SCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECC
T ss_pred             cccccccEEEEEEEEeccCCceEEEEEcCCCCCcCCCceEEEEcCCCccCcCCceEecc
Confidence            34445689999999999999999999999999999999999999999999999999874

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=99.92  E-value=2.6e-25  Score=141.50  Aligned_cols=59  Identities=34%  Similarity=0.761  Sum_probs=54.1

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEE
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVT   64 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~   64 (65)
                      +.....+|||+|||||.+++++|||||||||++||++|||||+++.    +.|||++.++||+
T Consensus       152 ~~~~~~~Hav~iVGyg~~~~~~~wiv~NSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~  214 (216)
T d1cqda_         152 SCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV  214 (216)
T ss_dssp             CCCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             cccccCCcceeeeccccccCCceEEEECCCCCccccCCEEEEEcCCCCCCCCCCccceeeeee
Confidence            4456789999999999999999999999999999999999999863    6899999999996

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=99.92  E-value=2.5e-25  Score=142.18  Aligned_cols=60  Identities=42%  Similarity=0.893  Sum_probs=53.8

Q ss_pred             CCCCCCCeEEEEEEEecc-CCeeEEEEEcCCCCCCCCCeEEEEecc----CCeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIK----DNNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~-~~~~yW~i~NSwg~~WG~~Gy~~i~~~----~~~cgi~~~~~~p~v   65 (65)
                      ++....+|||+||||+.+ ++++|||||||||++||++|||||+|+    .+.|||++++.||+.
T Consensus       155 ~~~~~~~Hav~iVGy~~~~~g~~ywiikNSWG~~WG~~Gy~~i~~g~~~~~n~CgI~~~~~yp~~  219 (224)
T d1s4va_         155 SCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIK  219 (224)
T ss_dssp             CCCCCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             cccccCCcceEEEecccccCCceEEEEEcCCCCccccCceEEEECCCCCCCCcCCccceeeeeec
Confidence            455678999999999876 689999999999999999999999996    478999999999973

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=99.91  E-value=5.6e-25  Score=140.33  Aligned_cols=59  Identities=44%  Similarity=0.934  Sum_probs=54.1

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEE
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVT   64 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~   64 (65)
                      ++....+|||+|||||.+.+++|||||||||++||++|||+|+|+.    +.|||++.++||+
T Consensus       151 ~~~~~~~Hav~iVGyg~~~~~~ywiirNSWG~~WGd~Gy~~I~~~~~~~~~~CGi~~~~~~p~  213 (215)
T d1iwda_         151 PCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT  213 (215)
T ss_dssp             CCCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             cccccccceEEEEEeecCCCceEEEEECCCCcccccCCEEEEECCCCCCCCcCCccccceeec
Confidence            4455679999999999999999999999999999999999999964    6799999999997

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.5e-25  Score=140.09  Aligned_cols=61  Identities=48%  Similarity=0.945  Sum_probs=54.5

Q ss_pred             CCCCCCCCeEEEEEEEecc----CCeeEEEEEcCCCCCCCCCeEEEEeccC-CeeeeccccEEEEC
Q psy3964           5 HNSPDGLDHAVLAVGYGEL----DGKPYWQVKNSWSTYWGNQGYVLMSIKD-NNCGVMTAPTYVTM   65 (65)
Q Consensus         5 ~~~~~~~~Hav~ivG~g~~----~~~~yW~i~NSwg~~WG~~Gy~~i~~~~-~~cgi~~~~~~p~v   65 (65)
                      .+.....+|+++|||||.+    ++.+|||||||||++||++|||||+|+. |.|||+++++||+|
T Consensus       156 ~~~~~~~~ha~~ivG~g~~~~~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~n~CgI~~~~~yp~~  221 (221)
T d1fh0a_         156 DCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV  221 (221)
T ss_dssp             TCCSSCCCEEEEEEEEEESSSCTTSSEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             cccccCCcccEEEeeEeccCcCCCCceEEEEEeCCCCCcccCCEEEEEeCCCCccccCCCcccccC
Confidence            3455678999999999954    5788999999999999999999999974 89999999999987

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.91  E-value=6.5e-25  Score=138.77  Aligned_cols=56  Identities=41%  Similarity=0.786  Sum_probs=49.9

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccC----CeeeeccccEEEEC
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD----NNCGVMTAPTYVTM   65 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~----~~cgi~~~~~~p~v   65 (65)
                      +....++|||+|||||.    +|||||||||++||++|||||+++.    +.|||++.++||+.
T Consensus       152 ~~~~~~~Hav~iVGyg~----~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (212)
T d1khqa_         152 PCGNKVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK  211 (212)
T ss_dssp             SCCSCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCTTCGGGTTSCCEEEEC
T ss_pred             ccccccCeEEEecccCC----cEEEEEcCCCCCcccCCEEEEEcCCCCCCCcCCcccEeeeecc
Confidence            44557899999999985    4999999999999999999999975    56999999999973

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=99.91  E-value=8.1e-25  Score=138.74  Aligned_cols=55  Identities=42%  Similarity=0.881  Sum_probs=49.4

Q ss_pred             CCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEec--cCCeeeeccccEEEE
Q psy3964           6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI--KDNNCGVMTAPTYVT   64 (65)
Q Consensus         6 ~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~--~~~~cgi~~~~~~p~   64 (65)
                      +.....+|||+||||+.    +|||||||||++||++|||||+|  +.|.|+|++.+.||+
T Consensus       150 ~~~~~~~Hav~iVGy~~----~ywiirNSWG~~WGd~Gy~~I~~~~~~~~Cgi~~~~~~p~  206 (208)
T d1o0ea_         150 PCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT  206 (208)
T ss_dssp             CCCSCCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEE
T ss_pred             cccccCCcEEEEEeeec----ceEEEECCCCCCcccCCeEEEEccCCCCccCccccceecc
Confidence            44556799999999974    59999999999999999999999  557899999999997

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8e-25  Score=144.51  Aligned_cols=61  Identities=28%  Similarity=0.634  Sum_probs=53.9

Q ss_pred             CCCCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeee--------eccccEE--EEC
Q psy3964           5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCG--------VMTAPTY--VTM   65 (65)
Q Consensus         5 ~~~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cg--------i~~~~~~--p~v   65 (65)
                      .+++...+|||+|||||.+++.+|||||||||++||++|||||.++.+.|+        |++.+.|  |+|
T Consensus       205 ~~~~~~~~HAV~IVGyg~~~g~~ywivrNSWG~~WGd~Gyf~I~~~~~~~~~~~~~~~~ie~~~~~~~p~~  275 (275)
T d1deua_         205 YQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV  275 (275)
T ss_dssp             CCSCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTTSCEEEEEECC
T ss_pred             ccccccCCeEEEEEEEeccCCcEEEEEECCCCCCcccCCEEEEECCCCCCCccccccccccCccEecCCcC
Confidence            455667899999999999999999999999999999999999999866554        8999998  654

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=99.18  E-value=1.1e-11  Score=88.43  Aligned_cols=41  Identities=29%  Similarity=0.446  Sum_probs=35.7

Q ss_pred             CCCCeEEEEEEEecc-CCe--eEEEEEcCCCCCCCCCeEEEEec
Q psy3964           9 DGLDHAVLAVGYGEL-DGK--PYWQVKNSWSTYWGNQGYVLMSI   49 (65)
Q Consensus         9 ~~~~Hav~ivG~g~~-~~~--~yW~i~NSwg~~WG~~Gy~~i~~   49 (65)
                      +..+|||+|||++.+ ++.  .+|+||||||+++|++||+.|+.
T Consensus       370 s~~tHAM~ltGv~~D~~g~~~~~w~VeNSWG~~~g~~Gy~~msd  413 (458)
T d3gcba_         370 SLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQ  413 (458)
T ss_dssp             CCCCEEEEEEEEEECTTTCSEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             CCCCeeEEEEEEEEcCCCCccceEEEEeccCCCCCCCceEEecH
Confidence            468999999999864 343  58999999999999999999985

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.5e-10  Score=82.46  Aligned_cols=41  Identities=34%  Similarity=0.644  Sum_probs=35.7

Q ss_pred             CCCCeEEEEEEEec---cCCe-eEEEEEcCCCCCCCCCeEEEEec
Q psy3964           9 DGLDHAVLAVGYGE---LDGK-PYWQVKNSWSTYWGNQGYVLMSI   49 (65)
Q Consensus         9 ~~~~Hav~ivG~g~---~~~~-~yW~i~NSwg~~WG~~Gy~~i~~   49 (65)
                      +..+|||+|+|++.   ++++ .+|+|+||||++-|++||+.|+.
T Consensus       367 s~~tHAM~ltGv~l~dd~~G~~~~w~VENSWG~~~g~kGy~~Msd  411 (453)
T d2cb5a_         367 SLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTD  411 (453)
T ss_dssp             CCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             cCCCceEEEEEEecccccCCCEeEEEEEccccCcCCCCceEEecH
Confidence            46789999999985   3466 57999999999999999999985

>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain StpA
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.36  E-value=0.27  Score=30.24  Aligned_cols=49  Identities=24%  Similarity=0.400  Sum_probs=36.9

Q ss_pred             CCCCCCCCeEEEEEEEecc-CCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeecc
Q psy3964           5 HNSPDGLDHAVLAVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT   58 (65)
Q Consensus         5 ~~~~~~~~Hav~ivG~g~~-~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~   58 (65)
                      ++......|||+|+|+..- ++++.-++=|=|..     ||......++...+..
T Consensus       111 s~~g~h~~hAmaV~GnA~~nn~q~vi~~WNPWd~-----~~~~qda~Sn~I~vs~  160 (173)
T d1cv8a_         111 SRNGMHAGHAMAVVGNAKLNNGQEVIIIWNPWDN-----GFMTQDAKNNVIPVSN  160 (173)
T ss_dssp             CBTTBCCEEEEEEEEEEEETTSCEEEEEECTTCS-----SCEEEETTCCEEECTT
T ss_pred             CCCCCccceeEEEeecceecCCceEEEEeCCCcC-----CccccCCccCeeeecC
Confidence            4455588999999999975 56888888898855     7888877766555433

>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain SspB
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.17  E-value=0.47  Score=29.33  Aligned_cols=47  Identities=15%  Similarity=0.223  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEEEEEeccCCeeEEEEEcCCCCCCCCCeEEEEeccCCeeeecc
Q psy3964           7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT   58 (65)
Q Consensus         7 ~~~~~~Hav~ivG~g~~~~~~yW~i~NSwg~~WG~~Gy~~i~~~~~~cgi~~   58 (65)
                      ....+.|||+|+|+..-+.++.-++=|=|.     +||..+...++..-+..
T Consensus       124 n~~hagHAmaV~GnA~~nn~~~ii~WNPWD-----~g~~~qda~Sn~I~vs~  170 (183)
T d1pxva_         124 NDPHLGHALAVVGNAKINDQEKLIYWNPWD-----TELSIQDADSSLLHLSF  170 (183)
T ss_dssp             TSCCCEEEEEEEEEEEETTEEEEEEECTTC-----SSCEEEETTCCEEEEGG
T ss_pred             CCcccceeEEEeeeeeEcCceEEEEeCCCc-----CCccccCCccCeEeecC
Confidence            445678999999999877777777767774     48888887777665543