Psyllid ID: psy3965
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VCA2 | 548 | Organic cation transporte | no | N/A | 0.856 | 0.835 | 0.318 | 1e-62 | |
| Q95R48 | 567 | Organic cation transporte | no | N/A | 0.846 | 0.798 | 0.299 | 1e-55 | |
| Q9R0W2 | 555 | Solute carrier family 22 | yes | N/A | 0.857 | 0.827 | 0.302 | 6e-53 | |
| O15244 | 555 | Solute carrier family 22 | yes | N/A | 0.710 | 0.684 | 0.300 | 6e-51 | |
| O70577 | 553 | Solute carrier family 22 | yes | N/A | 0.859 | 0.831 | 0.287 | 1e-50 | |
| Q9Y226 | 551 | Solute carrier family 22 | no | N/A | 0.835 | 0.811 | 0.295 | 4e-50 | |
| Q5R5H7 | 555 | Solute carrier family 22 | no | N/A | 0.859 | 0.828 | 0.278 | 3e-49 | |
| Q9WTW5 | 551 | Solute carrier family 22 | no | N/A | 0.842 | 0.818 | 0.273 | 9e-48 | |
| Q8MJI6 | 554 | Solute carrier family 22 | yes | N/A | 0.837 | 0.808 | 0.287 | 1e-47 | |
| O88446 | 551 | Solute carrier family 22 | no | N/A | 0.842 | 0.818 | 0.272 | 6e-47 |
| >sp|Q9VCA2|ORCT_DROME Organic cation transporter protein OS=Drosophila melanogaster GN=Orct PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 162/508 (31%), Positives = 256/508 (50%), Gaps = 50/508 (9%)
Query: 33 DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCA---QTDNFDHISF 89
D + +GEFG +Q ++ LL L I C +H A F A +F CA + + +S
Sbjct: 4 DDVITHLGEFGPYQKRIYYLLCLPAIVCAFHKLAGVFLLAKPDFRCALPYENGSIYELS- 62
Query: 90 PEWINISGVFTRDDEKFGYNPCAIKDLDYSQSY-HDLLLESENVTTTRPCQKWLYDTNNF 148
P N+S ++E+ C+ D+DY++ Y + + S N T T C ++YD + +
Sbjct: 63 PHLWNLS---YPENER-----CSYYDVDYTEEYLNGSIPRSSNETKT--CSSYVYDRSKY 112
Query: 149 GDTIISEPE---SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLG 205
++ ++E S S + + + + G + GRK SLV QL+ G
Sbjct: 113 LNSAVTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFG 172
Query: 206 AGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIA 265
A +P + Y + R ++G + +V+ +E+VG + AG++ +G++
Sbjct: 173 VLAAVAPEYFSYTISRMIVGATTSGVFLVAYVIALEMVGSSYRLFAGVAMQMFFSVGFML 232
Query: 266 ISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFND 325
+G AY+IH WR LQ IT P ++FL +W IPES RWLL G+ +EA +++ AA+ N
Sbjct: 233 TAGFAYFIHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENK 292
Query: 326 KTLPANT-DKLLKQSVSSMKED----SGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY 380
+P ++L+ + K+D S V DL R P +R + + + WF VY
Sbjct: 293 VEVPNEIYEQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSGVY 352
Query: 381 YGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSIL 440
YGL N +N+GG+ VN +ISG VEIP + +
Sbjct: 353 YGLSWNTNNLGGNQLVNFMISGA--------------------------VEIPGYTLLLF 386
Query: 441 ILLKMGRRRPLCLTTMAAGVACLVTLAFPQG-SWMTISLAMIGKFAISSSNVVMPVYTAE 499
L + GRR LC T M AG++ L T+ P +W+ ++ AMIGK AI+SS + +++AE
Sbjct: 387 TLNRWGRRSILCGTMMVAGISLLATIFVPSDMNWLIVACAMIGKLAITSSYGTIYIFSAE 446
Query: 500 LFPTKMRNLGVGASSVPAGVALILIPYL 527
FPT +RN+G+GASS+ A V IL PYL
Sbjct: 447 QFPTVVRNVGLGASSMVARVGGILAPYL 474
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Probably transports organic cations. Drosophila melanogaster (taxid: 7227) |
| >sp|Q95R48|OCTL_DROME Organic cation transporter-like protein OS=Drosophila melanogaster GN=Orct2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 152/507 (29%), Positives = 253/507 (49%), Gaps = 54/507 (10%)
Query: 39 IGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQT-DNFDHISFPEWI-NIS 96
+G+FGR+Q + L+ L +IP +H A F A +F CA +N P + N+S
Sbjct: 10 LGDFGRYQKIIYFLICLTSIPVAFHKLAGVFLLAKPDFRCALPFENGSSYDLPTHLWNLS 69
Query: 97 GVFTRDDEKFGYNPCAIKDLDYSQSY-HDLLLESENVTTTRPCQKWLYDTNNFGDTIISE 155
++E+ C+ D+DY++ Y + + S N T T C ++YD + + ++ ++E
Sbjct: 70 ---YPENER-----CSYYDVDYTEEYLNGSIPRSSNETKT--CSSYVYDRSKYLNSAVTE 119
Query: 156 PE---SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP 212
+ + + + + G ++GRK L SLV Q++ G +P
Sbjct: 120 WNLVCGRDFMAATSDSLFMLGVLLGSIVFGQLSDKYGRKPILFASLVIQVLFGVLAGVAP 179
Query: 213 WFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYY 272
+ Y R M+G + +V+ ME+VG AGI + +G++ + AY+
Sbjct: 180 EYFTYTFARLMVGATTSGVFLVAYVVAMEMVGPDKRLYAGIFVMMFFSVGFMLTAVFAYF 239
Query: 273 IHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFN-----DKT 327
+H WR LQ +T P +IF+ +W IPES RWLL G+ + A+ ++ AARFN D+
Sbjct: 240 VHDWRWLQIALTLPGLIFMFYYWIIPESARWLLLKGRKDCAIANMQKAARFNKVEISDEA 299
Query: 328 LP------ANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYY 381
L N+++ KQ + + D G V DL+ P +R + + ++ W VYY
Sbjct: 300 LSELLDEGENSEEKAKQKLEDQELDEGPPPSVWDLFCYPNLRRKTLLIFLDWLVTSGVYY 359
Query: 382 GLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILI 441
GL N SN+GG+V +N VISG VEIPA +L
Sbjct: 360 GLSWNTSNLGGNVLLNFVISGA--------------------------VEIPAYIFLLLT 393
Query: 442 LLKMGRRRPLCLTTMAAGVACLVTLAFPQG-SWMTISLAMIGKFAISSSNVVMPVYTAEL 500
L + GRR LC + AG++ L T+ PQ + ++ AM+GK AI++S + +++AE
Sbjct: 394 LNRWGRRSILCGCLVMAGLSLLATVIIPQRMHTLIVACAMLGKLAITASYGTVYIFSAEQ 453
Query: 501 FPTKMRNLGVGASSVPAGVALILIPYL 527
FPT +RN+ +GA+S+ A ++ ++ P+L
Sbjct: 454 FPTVVRNVALGAASMVARISGMMAPFL 480
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Probably transports organic cations. Drosophila melanogaster (taxid: 7227) |
| >sp|Q9R0W2|S22A2_RAT Solute carrier family 22 member 2 OS=Rattus norvegicus GN=Slc22a2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 156/516 (30%), Positives = 255/516 (49%), Gaps = 57/516 (11%)
Query: 33 DPISNAIGEFGRWQFQLTVLLSLLN---IPCTWHIFALTFQAADQNFW---CAQTDNFDH 86
D I IGEF +Q Q LL+LL+ P I L F D + W A+
Sbjct: 5 DDILEHIGEFHLFQKQTFFLLALLSGAFTPIYVGIVFLGF-TPDHHCWSPGAAKLSQRCG 63
Query: 87 ISFPEWIN--ISGVFTRDDEKFGYNPCAIKDLDYSQSYHDL------LLESENVTTTRPC 138
S E +N + G+ D+ F + C ++D++QS D L N PC
Sbjct: 64 WSQAEELNYTVPGLGPSDEASF-LSQCMRYEVDWNQSTLDCVDPLSSLAADRNQLPLGPC 122
Query: 139 QK-WLYDTNNFGDTIISEPE---SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRAL 194
+ W+Y+T G +I++E +HS+ + V + G + RFGRK L
Sbjct: 123 EHGWVYNTP--GSSIVTEFNLVCAHSWMLDLFQSVVNVGFFIGAMMIGYLADRFGRKFCL 180
Query: 195 MGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGIS 254
+ +++ + GA +A SP + LV R + G V + G++L E VG + + GI
Sbjct: 181 LVTILINAISGALMAISPNYAWMLVFRFLQGLVSKAGWLIGYILITEFVGLGYRRMVGIC 240
Query: 255 YLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAM 314
Y +G + ++G+AY I +WR LQ+ +T P FL+ +WCIPESPRWL++ K +AM
Sbjct: 241 YQIAFTVGLLILAGVAYVIPNWRWLQFAVTLPNFCFLLYFWCIPESPRWLISQNKIVKAM 300
Query: 315 EVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVE--VLDLWRTPLMRLISCVQYVV 372
+++K A+ N K++P + L + ED+GKK+ LDL RTP +R + +
Sbjct: 301 KIIKHIAKKNGKSVPVSLQNL------TPDEDAGKKLNPSFLDLVRTPQIRKHTLILMYN 354
Query: 373 WFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEI 432
WF+ ++Y GL++++ G ++Y++ S +VE
Sbjct: 355 WFTSSVLYQGLIMHMGLAGDNIYLDFFYS--------------------------ALVEF 388
Query: 433 PAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQG-SWMTISLAMIGKFAISSSNV 491
PA + IL + ++GRR P ++ M AG ACL ++ P W+ I++A +G+ I+ +
Sbjct: 389 PAAFIIILTIDRVGRRYPWAVSNMVAGAACLASVFIPDDLQWLKITIACLGRMGITMAYE 448
Query: 492 VMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
++ + AEL+PT +RNLGV S + I+ P+L
Sbjct: 449 MVCLVNAELYPTYIRNLGVLVCSSMCDIGGIITPFL 484
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Mediates tubular uptake of organic compounds from circulation. Mediates the influx of agmatine, serotonin, choline, ranitidine, histamin, creatinine, amantadine, memantine, acriflavine, 4-[4-(dimethylamino)-styryl]-N-methylpyridinium ASP and amiloride (By similarity). Mediates the influx of adrenaline, noradrenaline (norepinephrine), dopamine, cimetidine, famotidine, metformin, N-1-methylnicotinamide (NMN), 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), oxaliplatin and cisplatin. Cisplatin may develop a nephrotoxic action. Transport of creatinine is inhibited by fluoroquinolones such as DX-619 and LVFX. This transporter is a major determinant of the anticancer activity of oxaliplatin and may contribute to antitumor specificity. Rattus norvegicus (taxid: 10116) |
| >sp|O15244|S22A2_HUMAN Solute carrier family 22 member 2 OS=Homo sapiens GN=SLC22A2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (513), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 130/433 (30%), Positives = 224/433 (51%), Gaps = 53/433 (12%)
Query: 111 CAIKDLDYSQSYHDLLLESENVTTTR------PCQK-WLYDTNNFGDTIISEPE---SHS 160
C ++D++QS D + ++ T R PC+ W+Y+T G +I++E ++S
Sbjct: 89 CRRYEVDWNQSTFDCVDPLASLDTNRSRLPLGPCRDGWVYETP--GSSIVTEFNLVCANS 146
Query: 161 YEM---QSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGY 217
+ + QS +V + G ++ RFGRK L+ +++ G +A SP +
Sbjct: 147 WMLDLFQSSVNV---GFFIGSMSIGYIADRFGRKLCLLTTVLINAAAGVLMAISPTYTWM 203
Query: 218 LVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSWR 277
L+ R + G V + G++L E VG ++ GI Y +G + ++G+AY + WR
Sbjct: 204 LIFRLIQGLVSKAGWLIGYILITEFVGRRYRRTVGIFYQVAYTVGLLVLAGVAYALPHWR 263
Query: 278 ILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLK 337
LQ+ ++ P FL+ +WCIPESPRWL++ K EAM ++K A+ N K+LPA+ +L
Sbjct: 264 WLQFTVSLPNFFFLLYYWCIPESPRWLISQNKNAEAMRIIKHIAKKNGKSLPASLQRL-- 321
Query: 338 QSVSSMKEDSGKKVE--VLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVY 395
++E++GKK+ LDL RTP +R + + WF+ ++Y GL++++ G ++Y
Sbjct: 322 ----RLEEETGKKLNPSFLDLVRTPQIRKHTMILMYNWFTSSVLYQGLIMHMGLAGDNIY 377
Query: 396 VNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTT 455
++ S +VE PA M IL + ++GRR P +
Sbjct: 378 LDFFYS--------------------------ALVEFPAAFMIILTIDRIGRRYPWAASN 411
Query: 456 MAAGVACLVTLAFPQG-SWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASS 514
M AG ACL ++ P W+ I ++ +G+ I+ + ++ + AEL+PT +RNLGV S
Sbjct: 412 MVAGAACLASVFIPGDLQWLKIIISCLGRMGITMAYEIVCLVNAELYPTFIRNLGVHICS 471
Query: 515 VPAGVALILIPYL 527
+ I+ P+L
Sbjct: 472 SMCDIGGIITPFL 484
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Mediates tubular uptake of organic compounds from circulation. Mediates the influx of agmatine, dopamine, noradrenaline (norepinephrine), serotonin, choline, famotidine, ranitidine, histamin, creatinine, amantadine, memantine, acriflavine, 4-[4-(dimethylamino)-styryl]-N-methylpyridinium ASP, amiloride, metformin, N-1-methylnicotinamide (NMN), tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, cisplatin and oxaliplatin. Cisplatin may develop a nephrotoxic action. Transport of creatinine is inhibited by fluoroquinolones such as DX-619 and LVFX. This transporter is a major determinant of the anticancer activity of oxaliplatin and may contribute to antitumor specificity. Homo sapiens (taxid: 9606) |
| >sp|O70577|S22A2_MOUSE Solute carrier family 22 member 2 OS=Mus musculus GN=Slc22a2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/515 (28%), Positives = 251/515 (48%), Gaps = 55/515 (10%)
Query: 33 DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWC-----AQTDNFDHI 87
D I IGEF +Q Q LL+LL+ T + F N C A+
Sbjct: 5 DDILEHIGEFHLFQKQTFFLLALLSGAFTPIYVGIVFLGFTPNHHCRSPGVAELSQRCGW 64
Query: 88 SFPEWIN--ISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTR------PCQ 139
S E +N + G+ + + F + C ++D++QS D + ++ R PC+
Sbjct: 65 SPAEELNYTVPGLGSAGEVSF-LSQCMRYEVDWNQSTLDCVDPLSSLAANRSHLPLSPCE 123
Query: 140 K-WLYDTNNFGDTIISEPE---SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALM 195
W+YDT G +I++E +HS+ + + + G + RFGRK L+
Sbjct: 124 HGWVYDTP--GSSIVTEFNLVCAHSWMLDLFQSLVNVGFFIGAVGIGYLADRFGRKFCLL 181
Query: 196 GSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISY 255
+++ + G +A SP + LV R + G V + G++L E VG + GI Y
Sbjct: 182 VTILINAISGVLMAISPNYAWMLVFRFLQGLVSKAGWLIGYILITEFVGLGYRRTVGICY 241
Query: 256 LFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAME 315
+G + ++G+AY + +WR LQ+ +T P FL+ +WCIPESPRWL++ K +AM+
Sbjct: 242 QIAFTVGLLILAGVAYALPNWRWLQFAVTLPNFCFLLYFWCIPESPRWLISQNKNAKAMK 301
Query: 316 VLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVE--VLDLWRTPLMRLISCVQYVVW 373
++K A+ N K++P + L + ED+G K+ LDL RTP +R + + W
Sbjct: 302 IIKHIAKKNGKSVPVSLQSL------TADEDTGMKLNPSFLDLVRTPQIRKHTLILMYNW 355
Query: 374 FSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIP 433
F+ ++Y GL++++ G ++Y++ S +VE P
Sbjct: 356 FTSSVLYQGLIMHMGLAGDNIYLDFFYS--------------------------ALVEFP 389
Query: 434 AIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQG-SWMTISLAMIGKFAISSSNVV 492
A + IL + ++GRR P ++ M AG ACL ++ P W+ I++A +G+ I+ + +
Sbjct: 390 AAFIIILTIDRIGRRYPWAVSNMVAGAACLASVFIPDDLQWLKITVACLGRMGITIAYEM 449
Query: 493 MPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
+ + AEL+PT +RNL V S + I+ P+L
Sbjct: 450 VCLVNAELYPTYIRNLAVLVCSSMCDIGGIVTPFL 484
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Mediates tubular uptake of organic compounds from circulation. Mediates the influx of agmatine, dopamine, noradrenaline (norepinephrine), serotonin, choline, famotidine, ranitidine, histamin, creatinine, amantadine, memantine, acriflavine, 4-[4-(dimethylamino)-styryl]-N-methylpyridinium ASP, amiloride, metformin, N-1-methylnicotinamide (NMN), tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, cisplatin and oxaliplatin. Cisplatin may develop a nephrotoxic action. Transport of creatinine is inhibited by fluoroquinolones such as DX-619 and LVFX. This transporter is a major determinant of the anticancer activity of oxaliplatin and may contribute to antitumor specificity. Mus musculus (taxid: 10090) |
| >sp|Q9Y226|S22AD_HUMAN Solute carrier family 22 member 13 OS=Homo sapiens GN=SLC22A13 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 147/498 (29%), Positives = 235/498 (47%), Gaps = 51/498 (10%)
Query: 39 IGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDH---ISFPEWINI 95
IG+FGR+Q QL +LL +LN ++ FA F D+ CA +H +S E + +
Sbjct: 11 IGDFGRFQIQLLILLCVLNFLSPFYFFAHVFMVLDEPHHCAVAWVKNHTFNLSAAEQLVL 70
Query: 96 SGVFTRDDEKFGYNPCAI-KDLDYSQSYHDLLLESENVTTTRPCQ-KWLYDTNNFGD--- 150
S D PC + + + S D+L S T+PC W Y N
Sbjct: 71 S---VPLDTAGHPEPCLMFRPPPANASLQDIL--SHRFNETQPCDMGWEYPENRLPSLKN 125
Query: 151 --TIISEPESHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV 208
++ + + QS F ++ L G R GRK ++ L+ ++G
Sbjct: 126 EFNLVCDRKHLKDTTQSVF---MAGLLVGTLMFGPLCDRIGRKATILAQLLLFTLIGLAT 182
Query: 209 AASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISG 268
A P FE Y+ LR + + FS L E VG W T A + LG + ++G
Sbjct: 183 AFVPSFELYMALRFAVATAVAGLSFSNVTLLTEWVGPSWRTQAVVLAQCNFSLGQMVLAG 242
Query: 269 IAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTL 328
+AY +WR+LQ TAP ++ +W +PES RWLLT G+ +EA+++++ AA N + L
Sbjct: 243 LAYGFRNWRLLQITGTAPGLLLFFYFWALPESARWLLTRGRMDEAIQLIQKAASVNRRKL 302
Query: 329 PANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLS 388
+ +L+ Q V E +G LDL+R P +R ++ + + VWF L YYGL L +
Sbjct: 303 ---SPELMNQLV---PEKTGPSGNALDLFRHPQLRKVTLIIFCVWFVDSLGYYGLSLQVG 356
Query: 389 NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRR 448
+ G DVY+ +I G VE+PA SI ++ + GR+
Sbjct: 357 DFGLDVYLTQLIFGA--------------------------VEVPARCSSIFMMQRFGRK 390
Query: 449 RPLCLTTMAAGVACLVTLAFPQGSWMTIS-LAMIGKFAISSSNVVMPVYTAELFPTKMRN 507
T + G+ C++ + P + ++ LA++GK A +++ + VY+AELFPT +R
Sbjct: 391 WSQLGTLVLGGLMCIIIIFIPADLPVVVTMLAVVGKMATAAAFTISYVYSAELFPTILRQ 450
Query: 508 LGVGASSVPAGVALILIP 525
G+G + + + IL P
Sbjct: 451 TGMGLVGIFSRIGGILTP 468
|
Homo sapiens (taxid: 9606) |
| >sp|Q5R5H7|S22A2_PONAB Solute carrier family 22 member 2 OS=Pongo abelii GN=SLC22A2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 145/521 (27%), Positives = 256/521 (49%), Gaps = 61/521 (11%)
Query: 29 TTNEDPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHIS 88
TT +D + + GEF +Q Q+ LL+LL+ T + F + C ++ +S
Sbjct: 3 TTVDDVLEHG-GEFHFFQKQMFFLLALLSATFTPIYVGIVFLGFTPDHRC-RSPGVAELS 60
Query: 89 F------PEWINISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTR------ 136
E +N + + C ++D++QS + ++ T R
Sbjct: 61 LRCGWSPAEELNYTVPGPGPAGEASPRQCGRYEVDWNQSAFGCVDPLASLDTNRSRLPLG 120
Query: 137 PCQK-WLYDTNNFGDTIISEPE---SHSYEM---QSDFDVQLSKLYTGQSNLDDTGSRFG 189
PC++ W+Y+T G +I++E ++S+ + Q+ +V + G ++ RFG
Sbjct: 121 PCREGWVYETP--GSSIVTEFNLVCANSWMLDLFQASVNV---GFFFGSVSIGYIADRFG 175
Query: 190 RKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLT 249
RK L+ +++ G +A SP + L+ R + G V + G++L E VG ++
Sbjct: 176 RKLCLLTTVLINAAAGVLMAISPTYTWMLIFRLIQGLVSKAGWLIGYILITEFVGRRYRR 235
Query: 250 IAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGK 309
GI Y +G + ++G+AY + WR LQ+ +T P FL+ +WCIPESPRWL++ K
Sbjct: 236 TVGIFYQVAYTVGLLVLAGVAYALPHWRWLQFTVTLPNFFFLLYYWCIPESPRWLISQNK 295
Query: 310 TEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVE--VLDLWRTPLMRLISC 367
EAM ++K A+ N K+LPA+ L ++E++G+K+ LDL RTP +R +
Sbjct: 296 NAEAMRIIKHIAKKNGKSLPASLQCL------RLEEETGEKLNPSFLDLVRTPQIRKHTM 349
Query: 368 VQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVP 427
+ WF+ ++Y GL++++ G ++Y++ S
Sbjct: 350 ILMYNWFTSSVLYQGLIMHMGLAGDNIYLDFFYS-------------------------- 383
Query: 428 GIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQG-SWMTISLAMIGKFAI 486
+VE PA M I+ + ++GRR P + M AG ACL ++ P W+ I ++ +G+ I
Sbjct: 384 ALVEFPAAFMIIVTIDRIGRRYPWAASNMVAGAACLASVFIPGDLQWLKIIISCLGRMGI 443
Query: 487 SSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
+ + ++ + AEL+PT +RNLGV S + I+ P+L
Sbjct: 444 TMAYEIVRLVNAELYPTFIRNLGVHICSSMCDIGGIITPFL 484
|
Mediates tubular uptake of organic compounds from circulation. Mediates the influx of agmatine, dopamine, noradrenaline (norepinephrine), serotonin, choline, famotidine, ranitidine, histamin, creatinine, amantadine, memantine, acriflavine, 4-[4-(dimethylamino)-styryl]-N-methylpyridinium ASP, amiloride, metformin, N-1-methylnicotinamide (NMN), tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, cisplatin and oxaliplatin. Cisplatin may develop a nephrotoxic action. Transport of creatinine is inhibited by fluoroquinolones such as DX-619 and LVFX. This transporter is a major determinant of the anticancer activity of oxaliplatin and may contribute to antitumor specificity. Pongo abelii (taxid: 9601) |
| >sp|Q9WTW5|S22A3_MOUSE Solute carrier family 22 member 3 OS=Mus musculus GN=Slc22a3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 143/522 (27%), Positives = 234/522 (44%), Gaps = 71/522 (13%)
Query: 33 DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNF-WC------AQTDNFD 85
D GEFGR+Q ++ +LL L + + + F + ++ WC A +
Sbjct: 5 DQALRKAGEFGRFQRRVFLLLCLTGVTFAFLFVGVVFLGSQPDYYWCRGPRATALAERCA 64
Query: 86 HISFPEWINISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTRPCQKWLYDT 145
EW + E+ G C H LLE+ N ++ C
Sbjct: 65 WSPEEEWNLTTPELHVPAERRGQGHC-----------HRYLLEATNTSSELSCDPLTAFP 113
Query: 146 NNFGDTIISEP-----ESHSYEMQSDFDVQLSKLY--------------TGQSNLDDTGS 186
N + E+HS + S FD+ S + G L
Sbjct: 114 NRSAPLVSCSGDWRYVETHS-TIVSQFDLVCSNAWMLDLTQAILNLGFLAGAFTLGYAAD 172
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGK 246
R+GR + S + G VA +P F +++ R + G + FV+ EIVG K
Sbjct: 173 RYGRLIIYLISCFGVGITGVVVAFAPNFSVFVIFRFLQGVFGKGAWMTCFVIVTEIVGSK 232
Query: 247 WLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLT 306
I GI LG I + GIAY+ SW+ +Q I+ P+ +FL+ +W +PESPRWL+T
Sbjct: 233 QRRIVGIVIQMFFTLGIIILPGIAYFTPSWQGIQLAISLPSFLFLLYYWVVPESPRWLIT 292
Query: 307 MGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLIS 366
+ E+A+++L+ A+ N K L +N ++ ++ ++ LDL RTP MR +
Sbjct: 293 RKQGEKALQILRRVAKCNGKHLSSNYSEI------TVTDEEVSNPSCLDLVRTPQMRKCT 346
Query: 367 CVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCV 426
+ WF+ +VY GLV+ L IGG++Y++ IS
Sbjct: 347 LILMFAWFTSAVVYQGLVMRLGLIGGNLYIDFFIS------------------------- 381
Query: 427 PGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQG-SWMTISLAMIGKFA 485
G+VE+P + +L + ++GRR P + + AGV+CLVT P+G W+ ++A +G+
Sbjct: 382 -GLVELPGALLILLTIERLGRRLPFAASNIVAGVSCLVTAFLPEGIPWLRTTVATLGRLG 440
Query: 486 ISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
I+ + ++ + +EL+PT +RN GV S I+ P+L
Sbjct: 441 ITMAFEIVYLVNSELYPTTLRNFGVSLCSGLCDFGGIIAPFL 482
|
Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain. Mus musculus (taxid: 10090) |
| >sp|Q8MJI6|S22A2_RABIT Solute carrier family 22 member 2 OS=Oryctolagus cuniculus GN=SLC22A2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 151/526 (28%), Positives = 246/526 (46%), Gaps = 78/526 (14%)
Query: 33 DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWC-----AQTDNFDHI 87
D I +G F +Q Q LL+L++ T + F + C A+
Sbjct: 5 DDILEQVGHFHFFQKQTFFLLALISAAFTPIYVGIVFLGFTPDHRCRSPGVAELSQRCGW 64
Query: 88 SFPEWINIS--------GVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTR--- 136
S E +N + G F R C ++D++QS + ++ R
Sbjct: 65 SPGEELNYTVPGLGAADGAFARQ--------CMRYEVDWNQSSPGCVDPLASLAPNRSHL 116
Query: 137 ---PCQK-WLYDTNNFGDTIISEPE---SHSYEM---QSDFDVQLSKLYTGQSNLDDTGS 186
PCQ W+YDT G +I++E + S+ + QS ++ + G +
Sbjct: 117 PLGPCQHGWVYDTP--GSSIVTEFNLVCARSWMLDLFQSAVNI---GFFIGSVGIGYLAD 171
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGK 246
RFGRK L+ +++ G +A SP + L+ R + G V + G++L E VG
Sbjct: 172 RFGRKLCLLVTILINAAAGVLMAVSPNYTWMLIFRLIQGLVSKAGWLIGYILITEFVGLN 231
Query: 247 WLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLT 306
+ GI Y +G + ++G+AY + WR LQ +T P FL+ +WCIPESPRWL++
Sbjct: 232 YRRTVGILYQVAFTVGLLVLAGVAYALPRWRWLQLTVTLPYFCFLLYYWCIPESPRWLIS 291
Query: 307 MGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVE--VLDLWRTPLMRL 364
K +AM +++ A+ N K+LP + L ED G+K+ LDL RTP +R
Sbjct: 292 QNKNAKAMRIMEHIAKKNGKSLPVSLQSL------RAAEDVGEKLNPSFLDLVRTPQIRK 345
Query: 365 ISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTS 424
+C+ WF+ ++Y GL+++L GGD+Y++ S
Sbjct: 346 HTCILMYNWFTSSVLYQGLIMHLGLAGGDIYLDFFYS----------------------- 382
Query: 425 CVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFP---QGSWMTISLAMI 481
+VE PA + I + ++GRR P ++ M AG ACL ++ P QG + I++A +
Sbjct: 383 ---ALVEFPAAFLIIATIDRVGRRYPWAVSNMVAGAACLASVFVPDDLQG--LRITVACL 437
Query: 482 GKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
G+ I+ + ++ + AEL+PT +RNLGV S V I+ P+L
Sbjct: 438 GRMGITMAYEMVCLVNAELYPTFIRNLGVLVCSSLCDVGGIVTPFL 483
|
Mediates tubular uptake of organic compounds from circulation. Mediates the influx of agmatine, dopamine, noradrenaline (norepinephrine), serotonin, choline, famotidine, ranitidine, histamin, creatinine, amantadine, memantine, acriflavine, 4-[4-(dimethylamino)-styryl]-N-methylpyridinium ASP, amiloride, metformin, N-1-methylnicotinamide (NMN), 1-methyl-4-phenylpyridinium (MPP), cisplatin and oxaliplatin. Cisplatin may develop a nephrotoxic action. Transport of creatinine is inhibited by fluoroquinolones such as DX-619 and LVFX. This transporter is a major determinant of the anticancer activity of oxaliplatin and may contribute to antitumor specificity (By similarity). Mediates tubular uptake of tetraethylammonium (TEA) and cimetidine. Oryctolagus cuniculus (taxid: 9986) |
| >sp|O88446|S22A3_RAT Solute carrier family 22 member 3 OS=Rattus norvegicus GN=Slc22a3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 142/522 (27%), Positives = 232/522 (44%), Gaps = 71/522 (13%)
Query: 33 DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNF-WC------AQTDNFD 85
D GEFGR+Q ++ +LL L + + + F + ++ WC A +
Sbjct: 5 DQALRKAGEFGRFQRRVFLLLCLTGVTFAFLFVGVVFLGSQPDYYWCRGPRATALAERCA 64
Query: 86 HISFPEWINISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTRPCQKWLYDT 145
EW + E+ G C H LLE N ++ C
Sbjct: 65 WSPEEEWNLTTPELHVPAERRGQGHC-----------HRYLLEDTNTSSELSCDPLAAFP 113
Query: 146 NNFGDTIISEP-----ESHSYEMQSDFDVQLSKLY--------------TGQSNLDDTGS 186
N + E+HS + S FD+ + G L
Sbjct: 114 NRSAPLVPCSGDWRYVETHS-TIVSQFDLVCGNAWMLDLTQAILNLGFLAGAFTLGYAAD 172
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGK 246
R+GR + S + G VA +P F +++ R + G + FV+ EIVG K
Sbjct: 173 RYGRLIVYLISCFGVGITGVVVAFAPNFSVFVIFRFLQGVFGKGAWMTCFVIVTEIVGSK 232
Query: 247 WLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLT 306
I GI LG I + GIAY+ SW+ +Q I+ P+ +FL+ +W +PESPRWL+T
Sbjct: 233 QRRIVGIVIQMFFTLGIIILPGIAYFTPSWQGIQLAISLPSFLFLLYYWVVPESPRWLIT 292
Query: 307 MGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLIS 366
+ E+A+++L+ A+ N K L +N ++ ++ ++ LDL RTP MR +
Sbjct: 293 RKQGEKALQILRRVAKCNGKHLSSNYSEI------TVTDEEVSNPSCLDLVRTPQMRKCT 346
Query: 367 CVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCV 426
+ WF+ +VY GLV+ L IGG++Y++ IS
Sbjct: 347 LILMFAWFTSAVVYQGLVMRLGLIGGNLYMDFFIS------------------------- 381
Query: 427 PGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQG-SWMTISLAMIGKFA 485
G+VE+P + +L + ++GRR P + + AGV+CLVT P+G W+ ++A +G+
Sbjct: 382 -GLVELPGALLILLTIERLGRRLPFAASNIVAGVSCLVTAFLPEGIPWLRTTVATLGRLG 440
Query: 486 ISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
I+ + ++ + +EL+PT +RN GV S I+ P+L
Sbjct: 441 ITMAFEIVYLVNSELYPTTLRNFGVSLCSGLCDFGGIIAPFL 482
|
Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | ||||||
| 328723345 | 599 | PREDICTED: organic cation transporter pr | 0.878 | 0.784 | 0.529 | 1e-145 | |
| 328723349 | 609 | PREDICTED: organic cation transporter pr | 0.878 | 0.771 | 0.529 | 1e-145 | |
| 242006464 | 549 | organic cation transporter, putative [Pe | 0.917 | 0.894 | 0.484 | 1e-136 | |
| 91077168 | 532 | PREDICTED: similar to CG6006 CG6006-PC [ | 0.852 | 0.857 | 0.463 | 1e-118 | |
| 347969116 | 625 | AGAP013029-PA [Anopheles gambiae str. PE | 0.861 | 0.737 | 0.392 | 1e-90 | |
| 170057759 | 570 | organic cation transporter [Culex quinqu | 0.885 | 0.831 | 0.378 | 4e-90 | |
| 195452120 | 582 | GK13265 [Drosophila willistoni] gi|19416 | 0.878 | 0.807 | 0.373 | 2e-86 | |
| 390179268 | 566 | GA26232, isoform B [Drosophila pseudoobs | 0.885 | 0.837 | 0.357 | 9e-85 | |
| 198454757 | 605 | GA26232, isoform A [Drosophila pseudoobs | 0.885 | 0.783 | 0.357 | 1e-84 | |
| 195157116 | 565 | GL12224 [Drosophila persimilis] gi|19411 | 0.869 | 0.823 | 0.357 | 1e-84 |
| >gi|328723345|ref|XP_003247821.1| PREDICTED: organic cation transporter protein-like isoform 2 [Acyrthosiphon pisum] gi|328723347|ref|XP_001944418.2| PREDICTED: organic cation transporter protein-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/519 (52%), Positives = 347/519 (66%), Gaps = 49/519 (9%)
Query: 30 TNEDPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDN-FDHIS 88
T+EDP+S AIGEFGRWQ LT++LSLLN+PCTWHIF LTFQ AD +FWC + IS
Sbjct: 42 THEDPVSMAIGEFGRWQAMLTLILSLLNLPCTWHIFVLTFQGADTDFWCTPPPGVLNRIS 101
Query: 89 FPEWINISGVFTRD--DEKFGYNPCAIKDLDYSQ-----SYHDLLLESENVTTTRPCQKW 141
EW N+SGV Y+PC +D DY SY +LL + + C W
Sbjct: 102 VDEWKNLSGVIPESPTSNVSVYDPCHYRDFDYESLLSKFSYTELLKNKTDQYELKTCASW 161
Query: 142 LYDTNNFGDTIISE-------PESHSY-EMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRA 193
++T FGDTI SE E ++ EM V ++G RFGRK+
Sbjct: 162 QFNTTEFGDTITSEWNLVCDRKELKNFAEMMFLMGVAFGGFFSGL-----VSDRFGRKKT 216
Query: 194 LMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGI 253
LM SL+ QL LG VA PWFE YLVLR +LGFVCVSIVFSGFVLCME+VGGKWLTIAG+
Sbjct: 217 LMASLIMQLALGILVAICPWFEFYLVLRFILGFVCVSIVFSGFVLCMELVGGKWLTIAGV 276
Query: 254 SYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEA 313
YL PVP+ YI ISGIAY WR+LQW +T P + FL+L W +PESPRWLL MG+ +E
Sbjct: 277 LYLLPVPMSYIIISGIAYICRGWRLLQWCVTLPAVFFLVLHWFVPESPRWLLAMGRVDET 336
Query: 314 MEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVW 373
MEVL+ A++ N LP N DK+LKQS++ + + KV V DL+RT +R IS V Y++W
Sbjct: 337 MEVLEKASKINKHPLPVNMDKILKQSINKFEINGKPKVRVSDLFRTKNIRKISLVLYILW 396
Query: 374 FSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIP 433
FS+YLVYYGLVLNLSNIGG++Y+NT+IS G+VEIP
Sbjct: 397 FSLYLVYYGLVLNLSNIGGNIYINTIIS--------------------------GLVEIP 430
Query: 434 AIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGS--WMTISLAMIGKFAISSSNV 491
AI +S++ILLKMGRR PLCLT +A G+ACL+T P + W+++SL M GKF++SSSNV
Sbjct: 431 AILISVVILLKMGRRIPLCLTMVAGGIACLLTTILPADTDEWISLSLVMAGKFSVSSSNV 490
Query: 492 VMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530
+MP+YTAELFPT +RNLGVG S++PAG+ALI++PYLW++
Sbjct: 491 IMPLYTAELFPTVIRNLGVGTSNIPAGIALIMVPYLWNL 529
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328723349|ref|XP_003247822.1| PREDICTED: organic cation transporter protein-like isoform 3 [Acyrthosiphon pisum] gi|328723351|ref|XP_003247823.1| PREDICTED: organic cation transporter protein-like isoform 4 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/519 (52%), Positives = 347/519 (66%), Gaps = 49/519 (9%)
Query: 30 TNEDPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDN-FDHIS 88
T+EDP+S AIGEFGRWQ LT++LSLLN+PCTWHIF LTFQ AD +FWC + IS
Sbjct: 52 THEDPVSMAIGEFGRWQAMLTLILSLLNLPCTWHIFVLTFQGADTDFWCTPPPGVLNRIS 111
Query: 89 FPEWINISGVFTRD--DEKFGYNPCAIKDLDYSQ-----SYHDLLLESENVTTTRPCQKW 141
EW N+SGV Y+PC +D DY SY +LL + + C W
Sbjct: 112 VDEWKNLSGVIPESPTSNVSVYDPCHYRDFDYESLLSKFSYTELLKNKTDQYELKTCASW 171
Query: 142 LYDTNNFGDTIISE-------PESHSY-EMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRA 193
++T FGDTI SE E ++ EM V ++G RFGRK+
Sbjct: 172 QFNTTEFGDTITSEWNLVCDRKELKNFAEMMFLMGVAFGGFFSGL-----VSDRFGRKKT 226
Query: 194 LMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGI 253
LM SL+ QL LG VA PWFE YLVLR +LGFVCVSIVFSGFVLCME+VGGKWLTIAG+
Sbjct: 227 LMASLIMQLALGILVAICPWFEFYLVLRFILGFVCVSIVFSGFVLCMELVGGKWLTIAGV 286
Query: 254 SYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEA 313
YL PVP+ YI ISGIAY WR+LQW +T P + FL+L W +PESPRWLL MG+ +E
Sbjct: 287 LYLLPVPMSYIIISGIAYICRGWRLLQWCVTLPAVFFLVLHWFVPESPRWLLAMGRVDET 346
Query: 314 MEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVW 373
MEVL+ A++ N LP N DK+LKQS++ + + KV V DL+RT +R IS V Y++W
Sbjct: 347 MEVLEKASKINKHPLPVNMDKILKQSINKFEINGKPKVRVSDLFRTKNIRKISLVLYILW 406
Query: 374 FSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIP 433
FS+YLVYYGLVLNLSNIGG++Y+NT+IS G+VEIP
Sbjct: 407 FSLYLVYYGLVLNLSNIGGNIYINTIIS--------------------------GLVEIP 440
Query: 434 AIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGS--WMTISLAMIGKFAISSSNV 491
AI +S++ILLKMGRR PLCLT +A G+ACL+T P + W+++SL M GKF++SSSNV
Sbjct: 441 AILISVVILLKMGRRIPLCLTMVAGGIACLLTTILPADTDEWISLSLVMAGKFSVSSSNV 500
Query: 492 VMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530
+MP+YTAELFPT +RNLGVG S++PAG+ALI++PYLW++
Sbjct: 501 IMPLYTAELFPTVIRNLGVGTSNIPAGIALIMVPYLWNL 539
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242006464|ref|XP_002424070.1| organic cation transporter, putative [Pediculus humanus corporis] gi|212507376|gb|EEB11332.1| organic cation transporter, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 262/541 (48%), Positives = 352/541 (65%), Gaps = 50/541 (9%)
Query: 3 SDKMGADTVSNSTATPSNEKPPSSPVTTNEDPISNAIGEFGRWQFQLTVLLSLLNIPCTW 62
S +G D VS T N+D IS IG+FG+WQ LT L+L N+PCTW
Sbjct: 2 STNIGRDVVSIEETTKQQN-------YDNQDVISKIIGDFGKWQLHLTFFLALFNLPCTW 54
Query: 63 HIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVFTRDDE-KFGYNPCAIKDLDYSQS 121
HI+A+TFQA D FWCA +S EW NIS + + K+ YNPC I D++Y
Sbjct: 55 HIYAMTFQAPDVEFWCAPPKELQWLSLDEWRNISHTPSLNHHSKYDYNPCLIWDVNYLNF 114
Query: 122 YHDLLLES----ENVTTTRPCQKWLYDTNNFGDTIISE----PESHSYEMQSDFDVQLSK 173
+D L+ S +NV R C+KW+Y+ +++S+ E + + ++ V L+
Sbjct: 115 TYDELINSNFQHQNVGV-RHCEKWIYNEIQNSVSLVSQWNLVCERKTLKETAEM-VFLAG 172
Query: 174 LYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVF 233
+ G RFGRK+ LM SL+ Q+++G +A PW E +LVLR +LGF+ VS+VF
Sbjct: 173 VAIGGLVSGIISDRFGRKKTLMSSLLLQIIVGVLMAFIPWIEFFLVLRFLLGFISVSVVF 232
Query: 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLIL 293
SGFVLCME+VGGKW TI+G+SYLFPVPL YI +GIAY+IH WR +Q I+ P I+ L L
Sbjct: 233 SGFVLCMELVGGKWRTISGVSYLFPVPLSYIIFAGIAYFIHGWREIQLAISLPGILLLGL 292
Query: 294 WWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKK--- 350
WW +PESPRWLLTM K +E +E+LK+AA+ N L N DKLL+Q+ S ED KK
Sbjct: 293 WWVLPESPRWLLTMKKIDENVEILKEAAKMNKLDLTQNIDKLLQQTTSG--EDKTKKNQN 350
Query: 351 VEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTL 410
V +LDL+R P +R S + YV+WFSVY VY+GL++NLS+IGGD+Y+NT++S
Sbjct: 351 VGILDLFRYPNIRKKSLLLYVIWFSVYFVYFGLIMNLSHIGGDIYINTILS--------- 401
Query: 411 STSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQ 470
G+VEIP+IA+SI+ILLKMGRR PLCLT + G+ACL+TL F +
Sbjct: 402 -----------------GLVEIPSIALSIIILLKMGRRWPLCLTFLGGGIACLMTLFFGE 444
Query: 471 G-SWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWD 529
+TI+LAM GKF+I+SSN + PVYTAELFPT +RNLGVG+S+V AG+AL+L+PYLW+
Sbjct: 445 DRETVTITLAMFGKFSIASSNAIAPVYTAELFPTVIRNLGVGSSNVAAGLALVLVPYLWN 504
Query: 530 M 530
+
Sbjct: 505 L 505
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91077168|ref|XP_972002.1| PREDICTED: similar to CG6006 CG6006-PC [Tribolium castaneum] gi|270001712|gb|EEZ98159.1| hypothetical protein TcasGA2_TC000585 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/514 (46%), Positives = 322/514 (62%), Gaps = 58/514 (11%)
Query: 31 NEDPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFP 90
ED +S AIGEFGRWQ +T LLSL NIPCTWHIF TF AA++ WC++ F ++
Sbjct: 15 EEDVVSTAIGEFGRWQLLMTFLLSLFNIPCTWHIFVPTFHAAERETWCSRPKAFQDVAPS 74
Query: 91 EWINISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTRPCQKWLYDTNNFGD 150
W N FT+ + G+ C I DL + + DL ++ PC++W + G
Sbjct: 75 LWRN----FTQPE---GF--CKIYDLA-NVTEADLPRLAQMGRKLVPCKEWEFGGE--GS 122
Query: 151 TIISEPE--------SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQL 202
T+ SE + ++ EM V + L G L D ++GRK+ LM S++ Q
Sbjct: 123 TLTSEFDLVCDRKTLNNIAEMMFLGGVAIGGLVCGI--LSD---KYGRKKTLMASVLLQT 177
Query: 203 VLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLG 262
+LG +A +PWFE Y +LRA LGF+ VS+VFSGFVL +E+VGG W T+AGISYLFPV L
Sbjct: 178 ILGVIIAFAPWFEMYFILRAALGFISVSVVFSGFVLSIELVGGNWRTVAGISYLFPVSLS 237
Query: 263 YIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAAR 322
YI I+G+ Y + WR LQ I+ P +FLILWW +PESPRWLL MG+T E M +L+ A+
Sbjct: 238 YITIAGMGYLLRDWRELQLAISLPGCVFLILWWVLPESPRWLLAMGRTNEVMTILQRASN 297
Query: 323 FNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYG 382
+N K LP N D KQ + + + V V+DL++T MR + + +V+WFSVYLVYYG
Sbjct: 298 WNKKELPINID---KQLLPCESDSETEPVSVMDLFKTRQMRKKTLLLFVIWFSVYLVYYG 354
Query: 383 LVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILIL 442
LVLNL NIGGD+Y+N+++SG VEIPA+A+SILIL
Sbjct: 355 LVLNLGNIGGDLYINSILSGS--------------------------VEIPAVALSILIL 388
Query: 443 LKMGRRRPLCLTTMAAGVACLVTLAFPQGS----WMTISLAMIGKFAISSSNVVMPVYTA 498
LK GRR PL LT + +G AC T+ S W+ +LAM+ +F+ISSSN ++PV+TA
Sbjct: 389 LKGGRRWPLALTMILSGAACGCTIPIDLASDNLQWVITTLAMMSRFSISSSNAIIPVFTA 448
Query: 499 ELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532
EL+PT +RN+GVGAS+V AG+AL+L+PYLW+M N
Sbjct: 449 ELYPTIIRNIGVGASNVSAGIALMLVPYLWEMAN 482
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347969116|ref|XP_003436361.1| AGAP013029-PA [Anopheles gambiae str. PEST] gi|333467691|gb|EGK96652.1| AGAP013029-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 197/502 (39%), Positives = 282/502 (56%), Gaps = 41/502 (8%)
Query: 33 DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFPEW 92
D I IG++G+WQF +T LLSL +P T+HI++ TFQAAD++FWC + + D + W
Sbjct: 113 DIIGELIGDYGKWQFVMTFLLSLFQVPNTFHIYSPTFQAADKSFWCRRPTHLDDVPIDRW 172
Query: 93 INISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTRPCQKWLYDT-NNFGDT 151
N+S + Y+ A+ S S L +NVT T C W +D +N G+T
Sbjct: 173 RNVSSS-VENCRMLNYDWNALTSAQLSMSNFSL---PKNVTDTVACSAWEFDVHDNLGNT 228
Query: 152 IISEPE---SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV 208
SE Y L+ + TG +FGRK L S V Q + G +
Sbjct: 229 WSSEWNLVCDKEYLKNVAEMFFLAGVATGGITSGVLSDKFGRKMMLFISAVLQSIFGLAL 288
Query: 209 AASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISG 268
+ FE YLVLRA+LG V VS+ ++G +L +E V GKW TIAG+ LFP+P+ YI ISG
Sbjct: 289 YFADSFEFYLVLRALLGIVSVSVTYAGLILAIEYVDGKWRTIAGMYNLFPLPVSYIMISG 348
Query: 269 IAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTL 328
IAY +R LQ I P + +LW+ +PESPRWLL G+ E EV++ AA FN + L
Sbjct: 349 IAYLTQDYRNLQLCIGLPGVFLCLLWFVLPESPRWLLCKGRITEVKEVIRKAAAFNKRPL 408
Query: 329 PANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLS 388
P N DKLLK V + +G V +L+R+ +RL++ +WF++ LVYYGLVLN++
Sbjct: 409 PDNLDKLLKPPVDEEETAAG----VCELFRSKYLRLVTFCFLCIWFTMNLVYYGLVLNMN 464
Query: 389 NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRR 448
+ GG++Y+N+ ++ G+VEIPAIA+++ I+ + G++
Sbjct: 465 SFGGNIYLNSALA--------------------------GLVEIPAIALAMYIINRTGKK 498
Query: 449 RPLCLT---TMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKM 505
C T A + + P+ M I+ MIGKF IS+ N +MPVYTAEL+PT +
Sbjct: 499 WLFCATFFAAALACLCAAIVEGKPELLAMKITFVMIGKFTISAGNTIMPVYTAELYPTAI 558
Query: 506 RNLGVGASSVPAGVALILIPYL 527
RN+GVGA ++ AG AL+L PYL
Sbjct: 559 RNVGVGACNLAAGFALVLTPYL 580
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170057759|ref|XP_001864624.1| organic cation transporter [Culex quinquefasciatus] gi|167877086|gb|EDS40469.1| organic cation transporter [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 199/526 (37%), Positives = 292/526 (55%), Gaps = 52/526 (9%)
Query: 19 SNEKPPSSPVTTNE--DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNF 76
S + PP +E D I + IG++G+WQF +T LLSL +P T+HI++ TFQAA+++
Sbjct: 85 SGKSPPGKHKNADEECDVIGDLIGDYGKWQFVMTFLLSLFQVPNTFHIYSPTFQAAEKSH 144
Query: 77 WCAQTDNFDHISFPEWINISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTR 136
WC + N + W N++ D Y+ LD QS +L L + +
Sbjct: 145 WCRRPSNLNDTPVDLWRNVTRAL-EDCRILNYD---WSSLDSQQSLRNLSLAAN--MSHV 198
Query: 137 PCQKWLYDTN-NFGDTIISEPESHSYEMQSDFDVQLSKLY------TGQSNLDDTGSRFG 189
C W +D N N G+T SE S ++ +++++ TG +FG
Sbjct: 199 ACSSWEFDINDNLGNTWASE---WSLVCDKEYLKDVAEMFFLVGVATGGITSGVLSDKFG 255
Query: 190 RKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLT 249
RK+ L S V Q + G + E L LRA+LG V VS+ ++G +L +E V GKW T
Sbjct: 256 RKKMLFISAVLQAIFGLALYFVNSLEFMLALRALLGIVSVSVTYAGLILAIEYVDGKWRT 315
Query: 250 IAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGK 309
IAG+ LFP+P+ YI ISGIAY +R LQ I P + LW+ +PESPRWLL G+
Sbjct: 316 IAGMYNLFPLPVSYIMISGIAYLTQDYRNLQLCIGLPGVFLCFLWFVLPESPRWLLCKGR 375
Query: 310 TEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQ 369
E E++K AA FN++ LP N DKLLK + +G V +L+RT +RL++
Sbjct: 376 IAEVKEIVKKAAAFNNRPLPDNLDKLLKPPTDEEETGAG----VCELFRTKYLRLVTFCF 431
Query: 370 YVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGI 429
+WF++ LVYYGLVLN+++ GG++Y+N+ ++ G+
Sbjct: 432 LCIWFTMNLVYYGLVLNMNSFGGNIYLNSALA--------------------------GL 465
Query: 430 VEIPAIAMSILILLKMGRRRPLCLTTMAAGVACL---VTLAFPQGSWMTISLAMIGKFAI 486
VEIPAIA+++ I+ + G++ C T A +ACL V P+ + I+ MIGKF I
Sbjct: 466 VEIPAIALAMYIINRTGKKWLFCATFFACSLACLCAAVVEGKPEYLTLKITFLMIGKFTI 525
Query: 487 SSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532
S+ N +MPVYTAEL+PT +RN+GVGA ++ AG AL+L PYL M+N
Sbjct: 526 SAGNTIMPVYTAELYPTAIRNVGVGACNLAAGFALVLTPYL-SMLN 570
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195452120|ref|XP_002073221.1| GK13265 [Drosophila willistoni] gi|194169306|gb|EDW84207.1| GK13265 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 194/519 (37%), Positives = 282/519 (54%), Gaps = 49/519 (9%)
Query: 22 KPPSSPVTTNEDP---ISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWC 78
K P +ED I + IG +G+WQ +TVLLSL IP T+HI + +QAA+++FWC
Sbjct: 35 KAPGGASADDEDETDVIGDLIGHYGKWQLVMTVLLSLFQIPNTFHISSSVYQAANKDFWC 94
Query: 79 AQTDNFDHISFPEWINISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTRPC 138
+ +N H+ W NIS ++ N + + L + N C
Sbjct: 95 QRPENLQHLPVDVWRNISNSSDNCHQRDDINWSQLGNETTLTQLQQLSNGAGNDGELVAC 154
Query: 139 QKWLYDTN-NFGDTIISE-----PESHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKR 192
Q W Y+TN N G+T SE H + F L + TG +FGRK
Sbjct: 155 QSWEYETNDNVGNTWTSEWDLVCDREHLKNVAEMFF--LLGVATGGIISGYLSDKFGRKT 212
Query: 193 ALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAG 252
L S V Q + G + F YLVLRA+LG V VS+ +SG +L +E V GKW TIAG
Sbjct: 213 MLFISAVLQTIFGLWLYICSSFNLYLVLRALLGLVSVSVTYSGLILAIEYVDGKWRTIAG 272
Query: 253 ISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEE 312
+ LFP+P+ Y+ ISG+AY ++ LQ I P I LW+ +PESPRWLL G+ +E
Sbjct: 273 MYNLFPLPICYMIISGLAYLTQDYQNLQLCIGLPGIFLCFLWFVVPESPRWLLVKGRIDE 332
Query: 313 AMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVV 372
+++ AA+FN + LPA+ Q +E S + L+R+ +R IS +
Sbjct: 333 VRRIIESAAKFNGRQLPAD-----YQLTPPTQESSSQDFTY--LFRSGYLRRISICFLCI 385
Query: 373 WFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEI 432
WF++ LVYYG++LN+S+ GG+VY+N+ ++ G+VE+
Sbjct: 386 WFTMNLVYYGIILNMSSFGGNVYLNSALA--------------------------GLVEV 419
Query: 433 PAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGS----WMTISLAMIGKFAISS 488
PAIA+++ I+ K+G++ C T + +GVAC A +G W+ I+ M+GKF IS+
Sbjct: 420 PAIAVAMYIITKVGKKWLFCATLICSGVACFCA-AMTEGREDMLWLKITFLMMGKFTISA 478
Query: 489 SNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
N +MPVYTAEL+PT +RN+GVGA ++ AG+ALIL PYL
Sbjct: 479 GNTIMPVYTAELYPTPIRNVGVGACNLAAGLALILTPYL 517
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|390179268|ref|XP_003736850.1| GA26232, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859779|gb|EIM52923.1| GA26232, isoform B [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 320 bits (821), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 187/523 (35%), Positives = 282/523 (53%), Gaps = 49/523 (9%)
Query: 16 ATPSNEKPPSSPVTTNE--DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAAD 73
A P + P +P + D I + +G +G+WQ +TVLLSL +P T+HI + +QAA+
Sbjct: 25 ARPQSPSPGRNPAEDEDETDVIGDLMGHYGKWQLLMTVLLSLFQVPNTFHISSSVYQAAN 84
Query: 74 QNFWCAQTDNFDHISFPEWINISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVT 133
++FWC + + EW N+SG +D + L + + +V
Sbjct: 85 KDFWCQRPLELQQMPVDEWRNLSG---SNDNCHRWEGIGWSSLANDTTLQEAAEVVASVG 141
Query: 134 TTRPCQKWLYDT-NNFGDTIISE-----PESHSYEMQSDFDVQLSKLYTGQSNLDDTGSR 187
C+ W Y+T +N G+T SE + H + F L + TG +
Sbjct: 142 NLVACESWEYETHDNVGNTWTSEWDLVCDKEHLKNVAEMFF--LLGVATGGIISGYLSDK 199
Query: 188 FGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKW 247
FGRK L S + Q + G + FE YL LRA+LG V VS+ +S +L +E V GKW
Sbjct: 200 FGRKTMLFISAILQTIFGLCLYFCSSFELYLTLRALLGLVSVSVTYSALILAIEYVDGKW 259
Query: 248 LTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTM 307
TIAG+ LFP+P+ Y+ ISG+AY ++ LQ I P I LW+ +PESPRWLL
Sbjct: 260 RTIAGMYNLFPLPISYMIISGLAYLTQDYQALQLCIGLPGIFLCFLWFVVPESPRWLLVK 319
Query: 308 GKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISC 367
G+ +E +++ AA+FN + LP + Q +E S + + L+R+ +R I+
Sbjct: 320 GRVDEVRRIIEAAAKFNGRQLPVD-----YQLTPPTQESSSQNIT--HLFRSSYLRRITI 372
Query: 368 VQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVP 427
+WF++ LVYYG++LN+S+ GG+VY+N+ ++
Sbjct: 373 CFLCIWFTMNLVYYGIILNMSSFGGNVYLNSALA-------------------------- 406
Query: 428 GIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACL---VTLAFPQGSWMTISLAMIGKF 484
G+VEIPAIA+++ I+ K+G++ C T AGVAC +T W+ I+ M+GKF
Sbjct: 407 GLVEIPAIAVAMYIITKVGKKWLFCATLFCAGVACFCATITEGREDILWLKITFLMMGKF 466
Query: 485 AISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
IS+ N +MPVYTAEL+PT +RN+GVGA +V AG+ALIL PY+
Sbjct: 467 TISAGNTIMPVYTAELYPTAIRNVGVGACNVAAGLALILTPYI 509
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198454757|ref|XP_002137941.1| GA26232, isoform A [Drosophila pseudoobscura pseudoobscura] gi|198132940|gb|EDY68499.1| GA26232, isoform A [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 187/523 (35%), Positives = 282/523 (53%), Gaps = 49/523 (9%)
Query: 16 ATPSNEKPPSSPVTTNE--DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAAD 73
A P + P +P + D I + +G +G+WQ +TVLLSL +P T+HI + +QAA+
Sbjct: 64 ARPQSPSPGRNPAEDEDETDVIGDLMGHYGKWQLLMTVLLSLFQVPNTFHISSSVYQAAN 123
Query: 74 QNFWCAQTDNFDHISFPEWINISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVT 133
++FWC + + EW N+SG +D + L + + +V
Sbjct: 124 KDFWCQRPLELQQMPVDEWRNLSG---SNDNCHRWEGIGWSSLANDTTLQEAAEVVASVG 180
Query: 134 TTRPCQKWLYDT-NNFGDTIISE-----PESHSYEMQSDFDVQLSKLYTGQSNLDDTGSR 187
C+ W Y+T +N G+T SE + H + F L + TG +
Sbjct: 181 NLVACESWEYETHDNVGNTWTSEWDLVCDKEHLKNVAEMFF--LLGVATGGIISGYLSDK 238
Query: 188 FGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKW 247
FGRK L S + Q + G + FE YL LRA+LG V VS+ +S +L +E V GKW
Sbjct: 239 FGRKTMLFISAILQTIFGLCLYFCSSFELYLTLRALLGLVSVSVTYSALILAIEYVDGKW 298
Query: 248 LTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTM 307
TIAG+ LFP+P+ Y+ ISG+AY ++ LQ I P I LW+ +PESPRWLL
Sbjct: 299 RTIAGMYNLFPLPISYMIISGLAYLTQDYQALQLCIGLPGIFLCFLWFVVPESPRWLLVK 358
Query: 308 GKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISC 367
G+ +E +++ AA+FN + LP + Q +E S + + L+R+ +R I+
Sbjct: 359 GRVDEVRRIIEAAAKFNGRQLPVD-----YQLTPPTQESSSQNIT--HLFRSSYLRRITI 411
Query: 368 VQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVP 427
+WF++ LVYYG++LN+S+ GG+VY+N+ ++
Sbjct: 412 CFLCIWFTMNLVYYGIILNMSSFGGNVYLNSALA-------------------------- 445
Query: 428 GIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACL---VTLAFPQGSWMTISLAMIGKF 484
G+VEIPAIA+++ I+ K+G++ C T AGVAC +T W+ I+ M+GKF
Sbjct: 446 GLVEIPAIAVAMYIITKVGKKWLFCATLFCAGVACFCATITEGREDILWLKITFLMMGKF 505
Query: 485 AISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
IS+ N +MPVYTAEL+PT +RN+GVGA +V AG+ALIL PY+
Sbjct: 506 TISAGNTIMPVYTAELYPTAIRNVGVGACNVAAGLALILTPYI 548
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195157116|ref|XP_002019442.1| GL12224 [Drosophila persimilis] gi|194116033|gb|EDW38076.1| GL12224 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 190/531 (35%), Positives = 291/531 (54%), Gaps = 66/531 (12%)
Query: 16 ATPSNEKPPSSPVTTNE--DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAAD 73
A P + P +P + D I + +G +G+WQ +TVLLSL +P T+HI + +QAA+
Sbjct: 25 ARPQSPSPGRNPAEDEDETDVIGDLMGHYGKWQLLMTVLLSLFQVPNTFHISSSVYQAAN 84
Query: 74 QNFWCAQTDNFDHISFPEWINISGVFTRDD----EKFGY----NPCAIKDLDYSQSYHDL 125
++FWC + + EW N+SG + D+ E G+ N +++ +S ++ +L
Sbjct: 85 KDFWCQRPLELQQMPVDEWRNLSG--SNDNCHRWEGIGWSSLANDTTLQERRWSPAWGNL 142
Query: 126 LLESENVTTTRPCQKWLYDT-NNFGDTIISE-----PESHSYEMQSDFDVQLSKLYTGQS 179
+ C+ W Y+T +N G+T SE + H + F L + TG
Sbjct: 143 V----------ACESWEYETHDNVGNTWTSEWDLVCDKEHLKNVAEMFF--LLGVATGGI 190
Query: 180 NLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLC 239
+FGRK L S + Q + G + FE YL LRA+LG V VS+ +S +L
Sbjct: 191 ISGYLSDKFGRKTMLFISAILQTIFGLCLYFCSSFELYLTLRALLGLVSVSVTYSALILA 250
Query: 240 MEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPE 299
+E V GKW TIAG+ LFP+P+ Y+ ISG+AY ++ LQ I P I LW+ +PE
Sbjct: 251 IEYVDGKWRTIAGMYNLFPLPISYMIISGLAYLTQDYQALQLCIGLPGIFLCFLWFVVPE 310
Query: 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRT 359
SPRWLL G+ +E +++ AA+FN + LP + Q +E S + + L+R+
Sbjct: 311 SPRWLLVKGRVDEVRRIIEAAAKFNGRQLPVD-----YQLTPPTQESSSQNIT--HLFRS 363
Query: 360 PLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFH 419
+R I+ +WF++ LVYYG++LN+S+ GG+VY+N+ ++
Sbjct: 364 SYLRRITICFLCIWFTMNLVYYGIILNMSSFGGNVYLNSALA------------------ 405
Query: 420 DLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACL---VTLAFPQGSWMTI 476
G+VEIPAIA+++ I+ K+G++ C T AGVAC +T W+ I
Sbjct: 406 --------GLVEIPAIAVAMYIITKVGKKWLFCATLFCAGVACFCATITEGREDILWLKI 457
Query: 477 SLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
+ M+GKF IS+ N +MPVYTAEL+PT +RN+GVGA +V AG+ALIL PY+
Sbjct: 458 TFLMMGKFTISAGNTIMPVYTAELYPTAIRNVGVGACNVAAGLALILTPYI 508
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | ||||||
| FB|FBgn0063649 | 603 | CG6006 [Drosophila melanogaste | 0.708 | 0.628 | 0.334 | 6.6e-79 | |
| FB|FBgn0038404 | 670 | CG8925 [Drosophila melanogaste | 0.543 | 0.434 | 0.322 | 2.1e-62 | |
| FB|FBgn0019952 | 548 | Orct "Organic cation transport | 0.671 | 0.655 | 0.277 | 2.3e-58 | |
| FB|FBgn0086365 | 567 | Orct2 "Organic cation transpor | 0.846 | 0.798 | 0.284 | 3.8e-46 | |
| RGD|61936 | 555 | Slc22a2 "solute carrier family | 0.663 | 0.639 | 0.290 | 6.2e-45 | |
| ZFIN|ZDB-GENE-061013-532 | 508 | zgc:153639 "zgc:153639" [Danio | 0.659 | 0.694 | 0.283 | 2.6e-43 | |
| ZFIN|ZDB-GENE-040724-70 | 542 | si:dkey-119m7.4 "si:dkey-119m7 | 0.678 | 0.669 | 0.280 | 5.9e-43 | |
| UNIPROTKB|Q9Y226 | 551 | SLC22A13 "Solute carrier famil | 0.654 | 0.635 | 0.283 | 1.1e-42 | |
| MGI|MGI:1335072 | 553 | Slc22a2 "solute carrier family | 0.665 | 0.643 | 0.276 | 2.2e-42 | |
| ZFIN|ZDB-GENE-120215-78 | 537 | si:dkey-166k12.1 "si:dkey-166k | 0.654 | 0.651 | 0.268 | 2.2e-40 |
| FB|FBgn0063649 CG6006 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
Identities = 137/410 (33%), Positives = 206/410 (50%)
Query: 5 KMGADTVSNSTATPSNEKPPSSPVTTNEDPISNAIGEFGRWQFQLTVLLSLLNIPCTWHI 64
K A T + A S P T D I + +G +G+WQ +TVLLSL +P T+HI
Sbjct: 57 KQQAATPQSPAAAVSGLDPADDEDET--DVIGDLMGHYGKWQLLMTVLLSLFQVPNTFHI 114
Query: 65 FALTFQAADQNFWCAQTDNFDHISFPEWINISGVFTRDDEKFGYNPCAIKDLDYSQSYHD 124
+ +QAA+++FWC + H+ W N+SG + D N + +D+SQ ++
Sbjct: 115 SSSIYQAANKDFWCQRPAQLQHMPVATWRNLSG--SVD------NCRRWEGIDWSQVSNE 166
Query: 125 LLLESENVTTTR------PCQKWLYDTN-NFGDTIISE-----PESHSYEMQSDFDVQLS 172
L S+ T C+KW Y+TN N G+T S+ + H + F L
Sbjct: 167 TTLPSDWKTPAEMDKKLVACEKWEYETNDNVGNTWTSQWDLVCEKEHLKNVAEMFF--LL 224
Query: 173 KLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIV 232
+ TG +FGRK L S V Q + G + FE YL LRA+LG V VS+
Sbjct: 225 GVATGGIISGYLSDKFGRKTMLFISAVLQTIFGLWLYICSSFELYLTLRALLGLVSVSVT 284
Query: 233 FSGFVLCMEIVGGKWLTIAGISYLFPVPLXXXXXXXXXXXXHSWRILQWVITAPTIIFLI 292
+SG +L +E V GKW TIAG+ LFP+P+ ++ LQ I P I
Sbjct: 285 YSGLILAIEYVDGKWRTIAGMYNLFPLPISYMIISGLAYLTQDYQRLQLCIGIPGIFLCF 344
Query: 293 LWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVE 352
LW+ +PESPRWLL G+ +E +++ AA+FN + LPA+ +L + S +D
Sbjct: 345 LWFVVPESPRWLLVKGRIDEVRRIIEAAAKFNGRQLPADY-QLTPPTQESSTQD------ 397
Query: 353 VLDLWRTPLMRLISCVQYVVWFSXXXXXXXXXXNLSNIGGDVYVNTVISG 402
V L+R+ +R IS + +WF+ N+S+ GG+VY+N+ ++G
Sbjct: 398 VTYLFRSSYLRRISICFFCIWFTMNLVYYGIILNMSSFGGNVYLNSALAG 447
|
|
| FB|FBgn0038404 CG8925 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 2.1e-62, Sum P(3) = 2.1e-62
Identities = 104/322 (32%), Positives = 158/322 (49%)
Query: 35 ISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFPEWIN 94
+ +G WQ LLS+ CT+HIF FQ A ++FWCA+ +N +S EW N
Sbjct: 150 LERLLGCLTPWQSMWCALLSIFQAICTFHIFVYVFQIAPKDFWCARPENLMQMSVSEWRN 209
Query: 95 ISGVFTRDDEKFGYNPCAIKDLDYSQ-SYHD--LLLESENVTTTRPCQKWLY---DTNNF 148
IS N C + D+DY+Q +Y + L+ EN T Q W + D +
Sbjct: 210 ISQ---------SSNGCLLLDVDYTQVTYENNQLINWPENATDLGYRQCWHFEFSDVDGS 260
Query: 149 GDTIISEPESHSYEMQSDFDVQLSKLYT----GQSN---LDD-TGSRFGRKRALMGSLVC 200
T++ E +++ D+ LS + T G + L RFGR+ LM +
Sbjct: 261 AKTLVQE-----FDLVCGRDI-LSLVETCFLVGAAAGAVLSGWISDRFGRRHTLMAFVTI 314
Query: 201 QLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVP 260
Q V G +A S ++ LR ++GF +++ FVL +E+V GKW T+ GI + PV
Sbjct: 315 QSVFGGILAFSTSVAMFMSLRVIIGFASMTVTVVSFVLVVELVSGKWRTVIGILNILPVA 374
Query: 261 LXXXXXXXXXXXXHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDA 320
+ WR LQ I+ P +I L +W+ +PESPRWLL G+ +E +++ A
Sbjct: 375 ISYVLSAGLAYLIRDWRHLQLAISWPWLIMLSIWFWLPESPRWLLAQGRLDELCGLIERA 434
Query: 321 ARFN--DKTLPANTDKLLKQSV 340
AR N +LP+N K L+ +V
Sbjct: 435 ARMNGTSASLPSNYRKTLEAAV 456
|
|
| FB|FBgn0019952 Orct "Organic cation transporter" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 383 (139.9 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 106/382 (27%), Positives = 177/382 (46%)
Query: 33 DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCA---QTDNFDHISF 89
D + +GEFG +Q ++ LL L I C +H A F A +F CA + + +S
Sbjct: 4 DDVITHLGEFGPYQKRIYYLLCLPAIVCAFHKLAGVFLLAKPDFRCALPYENGSIYELSP 63
Query: 90 PEWINISGVFTRDDEKFGYNPCAIKDLDYSQSY-HDLLLESENVTTTRPCQKWLYDTNNF 148
W N+S ++E+ C+ D+DY++ Y + + S N T T C ++YD + +
Sbjct: 64 HLW-NLS---YPENER-----CSYYDVDYTEEYLNGSIPRSSNETKT--CSSYVYDRSKY 112
Query: 149 GDTIISEPE---SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLG 205
++ ++E S S + + + + G + GRK SLV QL+ G
Sbjct: 113 LNSAVTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFG 172
Query: 206 AGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLXXXX 265
A +P + Y + R ++G + +V+ +E+VG + AG++ +
Sbjct: 173 VLAAVAPEYFSYTISRMIVGATTSGVFLVAYVIALEMVGSSYRLFAGVAMQMFFSVGFML 232
Query: 266 XXXXXXXXHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFND 325
H WR LQ IT P ++FL +W IPES RWLL G+ +EA +++ AA+ N
Sbjct: 233 TAGFAYFIHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENK 292
Query: 326 KTLPANT-DKLLKQSVSSMKED----SGKKVEVLDLWRTPLMRLISCVQYVVWFSXXXXX 380
+P ++L+ + K+D S V DL R P +R + + + WF
Sbjct: 293 VEVPNEIYEQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSGVY 352
Query: 381 XXXXXNLSNIGGDVYVNTVISG 402
N +N+GG+ VN +ISG
Sbjct: 353 YGLSWNTNNLGGNQLVNFMISG 374
|
|
| FB|FBgn0086365 Orct2 "Organic cation transporter 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 144/507 (28%), Positives = 240/507 (47%)
Query: 39 IGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQT-DNFDHISFPEWI-NIS 96
+G+FGR+Q + L+ L +IP +H A F A +F CA +N P + N+S
Sbjct: 10 LGDFGRYQKIIYFLICLTSIPVAFHKLAGVFLLAKPDFRCALPFENGSSYDLPTHLWNLS 69
Query: 97 GVFTRDDEKFGYNPCAIKDLDYSQSY-HDLLLESENVTTTRPCQKWLYDTNNFGDTIISE 155
++E+ C+ D+DY++ Y + + S N T T C ++YD + + ++ ++E
Sbjct: 70 ---YPENER-----CSYYDVDYTEEYLNGSIPRSSNETKT--CSSYVYDRSKYLNSAVTE 119
Query: 156 PE---SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP 212
+ + + + + G ++GRK L SLV Q++ G +P
Sbjct: 120 WNLVCGRDFMAATSDSLFMLGVLLGSIVFGQLSDKYGRKPILFASLVIQVLFGVLAGVAP 179
Query: 213 WFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLXXXXXXXXXXX 272
+ Y R M+G + +V+ ME+VG AGI + +
Sbjct: 180 EYFTYTFARLMVGATTSGVFLVAYVVAMEMVGPDKRLYAGIFVMMFFSVGFMLTAVFAYF 239
Query: 273 XHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFN-----DKT 327
H WR LQ +T P +IF+ +W IPES RWLL G+ + A+ ++ AARFN D+
Sbjct: 240 VHDWRWLQIALTLPGLIFMFYYWIIPESARWLLLKGRKDCAIANMQKAARFNKVEISDEA 299
Query: 328 LPA------NTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSXXXXXX 381
L N+++ KQ + + D G V DL+ P +R + + ++ W
Sbjct: 300 LSELLDEGENSEEKAKQKLEDQELDEGPPPSVWDLFCYPNLRRKTLLIFLDWLVTSGVYY 359
Query: 382 XXXXNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILI 441
N SN+GG+V +N VISG VEIPA +L
Sbjct: 360 GLSWNTSNLGGNVLLNFVISGA--------------------------VEIPAYIFLLLT 393
Query: 442 LLKMGRRRPLCLTTMAAGVACLVTLAFPQGSW-MTISLAMIGKFAISSSNVVMPVYTAEL 500
L + GRR LC + AG++ L T+ PQ + ++ AM+GK AI++S + +++AE
Sbjct: 394 LNRWGRRSILCGCLVMAGLSLLATVIIPQRMHTLIVACAMLGKLAITASYGTVYIFSAEQ 453
Query: 501 FPTKMRNLGVGASSVPAGVALILIPYL 527
FPT +RN+ +GA+S+ A ++ ++ P+L
Sbjct: 454 FPTVVRNVALGAASMVARISGMMAPFL 480
|
|
| RGD|61936 Slc22a2 "solute carrier family 22 (organic cation transporter), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 6.2e-45, Sum P(2) = 6.2e-45
Identities = 112/385 (29%), Positives = 179/385 (46%)
Query: 33 DPISNAIGEFGRWQFQLTVLLSLLN---IPCTWHIFALTFQAADQNFW---CAQTDNFDH 86
D I IGEF +Q Q LL+LL+ P I L F D + W A+
Sbjct: 5 DDILEHIGEFHLFQKQTFFLLALLSGAFTPIYVGIVFLGF-TPDHHCWSPGAAKLSQRCG 63
Query: 87 ISFPEWIN--ISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLL--LES----ENVTTTRPC 138
S E +N + G+ D+ F + C ++D++QS D + L S N PC
Sbjct: 64 WSQAEELNYTVPGLGPSDEASF-LSQCMRYEVDWNQSTLDCVDPLSSLAADRNQLPLGPC 122
Query: 139 QK-WLYDTNNFGDTIISEPE---SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRAL 194
+ W+Y+T G +I++E +HS+ + V + G + RFGRK L
Sbjct: 123 EHGWVYNTP--GSSIVTEFNLVCAHSWMLDLFQSVVNVGFFIGAMMIGYLADRFGRKFCL 180
Query: 195 MGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGIS 254
+ +++ + GA +A SP + LV R + G V + G++L E VG + + GI
Sbjct: 181 LVTILINAISGALMAISPNYAWMLVFRFLQGLVSKAGWLIGYILITEFVGLGYRRMVGIC 240
Query: 255 YLFPVPLXXXXXXXXXXXXHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAM 314
Y + +WR LQ+ +T P FL+ +WCIPESPRWL++ K +AM
Sbjct: 241 YQIAFTVGLLILAGVAYVIPNWRWLQFAVTLPNFCFLLYFWCIPESPRWLISQNKIVKAM 300
Query: 315 EVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVE--VLDLWRTPLMRLISCVQYVV 372
+++K A+ N K++P + L ED+GKK+ LDL RTP +R + +
Sbjct: 301 KIIKHIAKKNGKSVPVSLQNLTPD------EDAGKKLNPSFLDLVRTPQIRKHTLILMYN 354
Query: 373 WFSXXXXXXXXXXNLSNIGGDVYVN 397
WF+ ++ G ++Y++
Sbjct: 355 WFTSSVLYQGLIMHMGLAGDNIYLD 379
|
|
| ZFIN|ZDB-GENE-061013-532 zgc:153639 "zgc:153639" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 2.6e-43, Sum P(2) = 2.6e-43
Identities = 107/378 (28%), Positives = 172/378 (45%)
Query: 35 ISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQT---DNFDHISFPE 91
I +++GEFG +Q +L V + L NI +H+F F A +C + +++ +
Sbjct: 7 ILSSVGEFGAFQKRLLVAVCLPNIFTAFHMFGQVFTAISFPHYCNSSWILRQAPNLTEEK 66
Query: 92 WINISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTRPC-QKWLYDTNNFGD 150
+N++ D K Y C + D+ E + TT C W+Y
Sbjct: 67 QLNLTVPL---DSKGQYESCKMFT-PVEMDIEDI--EHYGINTTTSCIDGWVYKAPKDSS 120
Query: 151 TIISE----PESHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGA 206
T+I+E E+ Y S + ++ L G ++GR+ A + SL Q + G
Sbjct: 121 TLITEFDLVCENKVYSEASQ-SIYMAGLLVGALLFGPMADKYGRRFATLLSLFLQFLSGV 179
Query: 207 GVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGG-KWLTIAGISYLFPVPLXXXX 265
GVA SP Y+ LR ++G I + FVL E G K +S+ F +
Sbjct: 180 GVAFSPNIYVYIALRFVVGTTISGISINTFVLGTEWCGSAKRALFTILSHCF-FAIGLML 238
Query: 266 XXXXXXXXHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAM-EVLKDAARFN 324
+WR+LQ V++AP +F I +W +PES RWLLT GK + A E+LK AAR N
Sbjct: 239 LSGVAYGIRNWRVLQLVLSAPVGLFFIYYWFLPESARWLLTQGKLDSAKREILK-AARIN 297
Query: 325 DKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSXXXXXXXXX 384
+ + N LL + + E++ K ++DL+R +R + + +WF
Sbjct: 298 GRKVSEN---LLDKMEA---ENTAKSSTMIDLFRVGYLRKRALIMCYMWFVTSLVYYGVS 351
Query: 385 XNLSNIGGDVYVNTVISG 402
N+ N G D+Y+ +I G
Sbjct: 352 LNVGNFGLDIYLTQLIFG 369
|
|
| ZFIN|ZDB-GENE-040724-70 si:dkey-119m7.4 "si:dkey-119m7.4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
Identities = 106/378 (28%), Positives = 172/378 (45%)
Query: 31 NEDPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFP 90
N D + + IG FGR+Q L V + L I +H+ F A C + + P
Sbjct: 2 NFDKVLDRIGGFGRFQKTLYVWICLPQIFLAFHMLVSVFTGAVPPHLCRSSWPVGDSAGP 61
Query: 91 EWINISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTRPCQK-WLYDTNNFG 149
+N+S F+ G + +D Q H L + +E+ +T + C W + F
Sbjct: 62 R-LNLS--FSSAP---GESCTPSQDGSLPQRNHSLPI-TEHSSTAKGCTGGWEFSKEVFL 114
Query: 150 DTIISEPE--SHSYEMQS-DFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGA 206
TI +E + + M + + + L G ++GR+ ++ L Q + G
Sbjct: 115 STIATEWDLVCENATMNNIGSSIYMFGLLVGAVLFGALADKYGRRIIILIGLAIQAIFGV 174
Query: 207 GVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGI--SYLFPVPLXXX 264
G A +P F Y++LR ++G +++ + FVL E G K +AG+ Y F
Sbjct: 175 GAAFAPNFYIYVLLRFVVGTTVSAVIMNAFVLGTEWTGPKKRMLAGVITDYFFG--FGYI 232
Query: 265 XXXXXXXXXHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFN 324
WR LQ I+AP+ +FL W +P+S RWL+ K EEA+++++ AA N
Sbjct: 233 LLAGVAYLIRDWRKLQLAISAPSFLFLFYVWVLPKSARWLMANNKHEEALDLIRKAALIN 292
Query: 325 DKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSXXXXXXXXX 384
K L + +L + SS K +K VLDL RTP MR S + + +WF
Sbjct: 293 GKPLEDDDMELYQSPKSSEKLQEQRKYTVLDLVRTPRMRKQSLILFYLWFVNVLVYYGLS 352
Query: 385 XNLSNIGGDVYVNTVISG 402
N+S+ G ++Y+ +I G
Sbjct: 353 LNISDFGMNIYLTQMIFG 370
|
|
| UNIPROTKB|Q9Y226 SLC22A13 "Solute carrier family 22 member 13" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 106/374 (28%), Positives = 165/374 (44%)
Query: 39 IGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDH---ISFPEWINI 95
IG+FGR+Q QL +LL +LN ++ FA F D+ CA +H +S E + +
Sbjct: 11 IGDFGRFQIQLLILLCVLNFLSPFYFFAHVFMVLDEPHHCAVAWVKNHTFNLSAAEQLVL 70
Query: 96 SGVFTRDDEKFGYNPCAI-KDLDYSQSYHDLLLESENVTTTRPCQK-WLYDTNNFGD--- 150
S D PC + + + S D+L S T+PC W Y N
Sbjct: 71 SVPL---DTAGHPEPCLMFRPPPANASLQDIL--SHRFNETQPCDMGWEYPENRLPSLKN 125
Query: 151 --TIISEPESHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV 208
++ + + QS F ++ L G R GRK ++ L+ ++G
Sbjct: 126 EFNLVCDRKHLKDTTQSVF---MAGLLVGTLMFGPLCDRIGRKATILAQLLLFTLIGLAT 182
Query: 209 AASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLXXXXXXX 268
A P FE Y+ LR + + FS L E VG W T A + L
Sbjct: 183 AFVPSFELYMALRFAVATAVAGLSFSNVTLLTEWVGPSWRTQAVVLAQCNFSLGQMVLAG 242
Query: 269 XXXXXHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTL 328
+WR+LQ TAP ++ +W +PES RWLLT G+ +EA+++++ AA N + L
Sbjct: 243 LAYGFRNWRLLQITGTAPGLLLFFYFWALPESARWLLTRGRMDEAIQLIQKAASVNRRKL 302
Query: 329 PANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSXXXXXXXXXXNLS 388
+ +L+ Q V E +G LDL+R P +R ++ + + VWF +
Sbjct: 303 ---SPELMNQLVP---EKTGPSGNALDLFRHPQLRKVTLIIFCVWFVDSLGYYGLSLQVG 356
Query: 389 NIGGDVYVNTVISG 402
+ G DVY+ +I G
Sbjct: 357 DFGLDVYLTQLIFG 370
|
|
| MGI|MGI:1335072 Slc22a2 "solute carrier family 22 (organic cation transporter), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 106/384 (27%), Positives = 178/384 (46%)
Query: 33 DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWC-----AQTDNFDHI 87
D I IGEF +Q Q LL+LL+ T + F N C A+
Sbjct: 5 DDILEHIGEFHLFQKQTFFLLALLSGAFTPIYVGIVFLGFTPNHHCRSPGVAELSQRCGW 64
Query: 88 SFPEWIN--ISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTR------PCQ 139
S E +N + G+ + + F + C ++D++QS D + ++ R PC+
Sbjct: 65 SPAEELNYTVPGLGSAGEVSF-LSQCMRYEVDWNQSTLDCVDPLSSLAANRSHLPLSPCE 123
Query: 140 K-WLYDTNNFGDTIISEPE---SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALM 195
W+YDT G +I++E +HS+ + + + G + RFGRK L+
Sbjct: 124 HGWVYDTP--GSSIVTEFNLVCAHSWMLDLFQSLVNVGFFIGAVGIGYLADRFGRKFCLL 181
Query: 196 GSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISY 255
+++ + G +A SP + LV R + G V + G++L E VG + GI Y
Sbjct: 182 VTILINAISGVLMAISPNYAWMLVFRFLQGLVSKAGWLIGYILITEFVGLGYRRTVGICY 241
Query: 256 LFPVPLXXXXXXXXXXXXHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAME 315
+ +WR LQ+ +T P FL+ +WCIPESPRWL++ K +AM+
Sbjct: 242 QIAFTVGLLILAGVAYALPNWRWLQFAVTLPNFCFLLYFWCIPESPRWLISQNKNAKAMK 301
Query: 316 VLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVE--VLDLWRTPLMRLISCVQYVVW 373
++K A+ N K++P + QS+++ ED+G K+ LDL RTP +R + + W
Sbjct: 302 IIKHIAKKNGKSVPVSL-----QSLTA-DEDTGMKLNPSFLDLVRTPQIRKHTLILMYNW 355
Query: 374 FSXXXXXXXXXXNLSNIGGDVYVN 397
F+ ++ G ++Y++
Sbjct: 356 FTSSVLYQGLIMHMGLAGDNIYLD 379
|
|
| ZFIN|ZDB-GENE-120215-78 si:dkey-166k12.1 "si:dkey-166k12.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 102/380 (26%), Positives = 158/380 (41%)
Query: 31 NEDPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWC-AQTDNFDHISF 89
N D + IG FG++Q L V + L I +H+ A F A C T + +F
Sbjct: 2 NFDQLLATIGGFGKYQKLLYVWICLPQIFLGFHMMASVFTGATPPHRCRGSTSGMEDWTF 61
Query: 90 PEWINISGVFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTRPCQK-WLYDTNNF 148
N+S V G+ D + S N + C+ W+Y F
Sbjct: 62 TS--NLSHVNLSISRLAGF-----ADACTAAS-------GVNRSARTNCETGWVYSHEVF 107
Query: 149 GDTIISEPE--SHSYEMQS-DFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLG 205
T ++E + + S + + L G R+GR+ A++ SL Q V G
Sbjct: 108 QSTTVTEWDLVCDKRGLSSLGSSIYMLGLLVGAVVFGAMADRYGRRFAMLVSLALQTVFG 167
Query: 206 AGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGI--SYLFPVPLXX 263
A +P F Y+ LR ++G ++ + FVL E + +AGI Y F
Sbjct: 168 VAAAFAPNFPVYVGLRFIIGMTVSGVIINAFVLGTEWTCTQRRMLAGIFTDYFFG--FGY 225
Query: 264 XXXXXXXXXXHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARF 323
WR LQ I+AP +F+ W +P S RWLL + EEA+++L+ AA
Sbjct: 226 MLLAGVAFLIRDWRKLQLAISAPGFLFIFYIWVLPHSARWLLVNNRKEEAIDLLRKAASV 285
Query: 324 NDKTLPANTDKLLKQSVSSMKEDSGK-KVEVLDLWRTPLMRLISCVQYVVWFSXXXXXXX 382
N +TLP V + G+ K V+DL RTP MR + + + +WF
Sbjct: 286 NGRTLPPTVQ------VERYESPQGRSKYTVVDLLRTPQMRKRALILFYIWFVNVLVYYG 339
Query: 383 XXXNLSNIGGDVYVNTVISG 402
+S++G D+Y+ + G
Sbjct: 340 LSLGVSDLGADLYLTQFMFG 359
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8MJI6 | S22A2_RABIT | No assigned EC number | 0.2870 | 0.8373 | 0.8086 | yes | N/A |
| Q9LHQ6 | OCT4_ARATH | No assigned EC number | 0.2713 | 0.8317 | 0.8460 | yes | N/A |
| O15244 | S22A2_HUMAN | No assigned EC number | 0.3002 | 0.7102 | 0.6846 | yes | N/A |
| Q9R0W2 | S22A2_RAT | No assigned EC number | 0.3023 | 0.8579 | 0.8270 | yes | N/A |
| O70577 | S22A2_MOUSE | No assigned EC number | 0.2873 | 0.8598 | 0.8318 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 535 | |||
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-80 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-18 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-12 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-10 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-08 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 1e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-07 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 3e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-04 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 9e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.002 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 0.002 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 260 bits (666), Expect = 1e-80
Identities = 157/503 (31%), Positives = 246/503 (48%), Gaps = 53/503 (10%)
Query: 40 GEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVF 99
GEFG +Q + +LL+L +H + F A C + ++S +N +
Sbjct: 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCR-LPDAANLSSRCELN---LT 56
Query: 100 TRDDEKFGYNPCAIKDLDYSQSYHDLLLE-----SENVTTTRPC-QKWLYDTNNFGDTII 153
C +D + L E + T PC W Y + F TI+
Sbjct: 57 LPRLPDGRPESCLRFMVDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIV 116
Query: 154 SE---PESHSYEM---QSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAG 207
+E ++++ QS F V + L D RFGRK+ L+ S + V G
Sbjct: 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSD---RFGRKKVLLLSTLVTAVSGVL 173
Query: 208 VAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAIS 267
A SP + +LV R ++G I VL E + K I G LG + +
Sbjct: 174 TAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLP 233
Query: 268 GIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKT 327
+AY+I WR LQ ++ PT +F +L W +PESPRWL++ G+ EEA+++L+ A+ N K
Sbjct: 234 LVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKK 293
Query: 328 LPANTDKLLKQSVSSMKEDSGKKVE--VLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVL 385
LPA S+S K+ S K + LDL+RTP +R + ++WF+ YYGLVL
Sbjct: 294 LPAE-----VLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVL 348
Query: 386 NLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM 445
+L N+GG++Y++ ISG +VE+PA +++L++ ++
Sbjct: 349 DLGNLGGNIYLDLFISG--------------------------LVELPAKLITLLLIDRL 382
Query: 446 GRRRPLCLTTMAAGVACLVTLAFPQG-SWMTISLAMIGKFAISSSNVVMPVYTAELFPTK 504
GRR + + + AGVA L+ L P ++ +LA++GKF I+S+ ++ +YTAEL+PT
Sbjct: 383 GRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442
Query: 505 MRNLGVGASSVPAGVALILIPYL 527
+RNLGVG S A V I+ P+L
Sbjct: 443 VRNLGVGVCSTMARVGSIISPFL 465
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-18
Identities = 89/370 (24%), Positives = 140/370 (37%), Gaps = 63/370 (17%)
Query: 185 GSRFGRKRALMGSLVCQLVLGA---GVAASPWFEGYLVLRAMLGFVC-VSIVFSGFVLCM 240
G RFGRK++L+ V V+GA G A F +V R ++G V +
Sbjct: 70 GDRFGRKKSLLIGNVL-FVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVP-MYIS 127
Query: 241 EI----------VGGKWLTIAGISYLFPVPLGYIAISGIAYYIHS--WRILQWVITAPTI 288
EI + GI + I G+ Y +S WRI + P I
Sbjct: 128 EIAPKKLRGALGSLYQLGITFGI------LVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 289 IFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSG 348
+ LI +PESPRWL+ GK EEA VL + + ++ ++ S +
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKL-----RGVSDVDQEIQEEKDSLERSVEA 236
Query: 349 KKVEVLDLWRTPLMR---LISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESF 405
+K L+L+R +R L+ + + L+ I Y + I F
Sbjct: 237 EKASWLELFRGKTVRQRLLMGVM------------LQIFQQLTGINAIFYYSPTI----F 280
Query: 406 NSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPL--CLTTMAAGVACL 463
+ LS S + + + G+V ++I ++ + GRR L MA L
Sbjct: 281 ETLGLSDSLL-------VTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVL 333
Query: 464 -VTLAFPQGS-WMTI-SLAMIGKFAIS---SSNVVMPVYTAELFPTKMRNLGVGASSVPA 517
V L S I ++ I F V V +ELFP +R + ++
Sbjct: 334 GVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAAN 393
Query: 518 GVALILIPYL 527
+A LI +L
Sbjct: 394 WLANFLIGFL 403
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 67/358 (18%), Positives = 133/358 (37%), Gaps = 39/358 (10%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVL---RAMLGFV--CVSIVFSGFV--LC 239
RFGRK++L+ + ++ + + + +L R +LG S + ++ +
Sbjct: 97 RFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIA 156
Query: 240 MEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHS--WRILQWVITAPTIIFLILWWCI 297
+ + G ++ ++ F + + Y SG ++ WRI + P + + + +
Sbjct: 157 PKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFL 216
Query: 298 PESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLW 357
PESPRWL+ G+ EEA + L + + LL + + S +K V W
Sbjct: 217 PESPRWLVGKGRVEEARKSLARLRGTSGEDKE-----LLDELELIDIKRSIEKRSVQPSW 271
Query: 358 RTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILC 417
+ L S + + V + I +Y + I F + +ST
Sbjct: 272 GS----LFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTI----FENAGVSTD---- 319
Query: 418 FHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPL------CLTTMAAGVACLVTLAFPQG 471
H S + G V ++I ++ + GRR L + +
Sbjct: 320 -HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378
Query: 472 SWMT-ISLAM----IGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILI 524
+++ I FA+ V V +E+FP +R G+ + +A ++
Sbjct: 379 KSSGNVAIVFILLFIAFFAMGWGPVPW-VIVSEIFPLSLRPKGISIAVAANWLANFIV 435
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 50/242 (20%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGY---LVLRAMLGFV---CVSIVFSGFV--- 237
+ GRK+ L L+C V G S + +GY L R + GF + IVFS F
Sbjct: 228 KLGRKQCL---LICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFL 284
Query: 238 -----------LCM-EIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITA 285
LCM ++GG + A +++ G+ G AY HSWR+ V
Sbjct: 285 AQEKRGEHLSWLCMFWMIGGIY--AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAF 342
Query: 286 PTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFN-------DKTLPANTDKLLKQ 338
P + + +PESPR+ L GK +EA +LK N +K N K + Q
Sbjct: 343 PCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQ 402
Query: 339 --SVSSMKEDSGK---------KVEVLDLWRT------PLMRLISCVQYVVWFSVYLVYY 381
+ ++ D+G E +W P +R I+ VWF++ YY
Sbjct: 403 EDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYY 462
Query: 382 GL 383
GL
Sbjct: 463 GL 464
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 3/115 (2%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGK 246
RFGR+R L+ L+ + +A + LV R +LG ++ + L E K
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119
Query: 247 WLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIP 298
A + LG + + + WR L ++ ++ +L +
Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 63/333 (18%), Positives = 112/333 (33%), Gaps = 41/333 (12%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGY---LVLRAMLGFVCVSIVFSGFVLCMEIV 243
R GR+R L L L+ L+LR + G ++ + L E
Sbjct: 78 RIGRRRVL---LWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA 134
Query: 244 GGKWLTIAGISYLFPVPLGYI---AISGIAYYIHSWRILQWVIT-APTIIFLILWWCIPE 299
++ A P+G ++G + WR L +V AP ++ L+L +PE
Sbjct: 135 PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPE 194
Query: 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRT 359
S +L++ V A + + A + K G K V
Sbjct: 195 SIDFLVSKRPETVRRIVNAIAPQMQAEAQSA---------LPEQKATQGTKRSVFKALFQ 245
Query: 360 PLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFH 419
I+ + ++++F + + Y L ++ ++ F+ + +T L
Sbjct: 246 GKTARITVLLWLLYFMLLVGVYFLT---------NWLPKLMVELGFSLSLAATGGAL--- 293
Query: 420 DLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGV-ACLVTLAFPQGSWMTISL 478
+ V G + I L R L + V A LV + + +
Sbjct: 294 -FNFGGVIGSI-IFGWLADRL------GPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLG 345
Query: 479 AMIGKFAISSSNVVMPVYTAELFPTKMRNLGVG 511
A+ G F + A +PT +R GVG
Sbjct: 346 AIAGFFVN-GGQSGLYALMALFYPTAIRATGVG 377
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 371 VVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIV 430
+ +F + YYGL+ L +V + S + G+
Sbjct: 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLS------------------LFGLG 223
Query: 431 EIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSN 490
I + L+ ++GRRR L L + L+ LA + + ++ F + +
Sbjct: 224 GILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283
Query: 491 VVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
+ +EL P + R G + + L P L
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL 320
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 263 YIAISGIAYYIHS--WRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDA 320
+IA SG A ++++ WR + P ++FL+L + +PE+PR+L++ GK E+A +L+
Sbjct: 178 FIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILR-- 235
Query: 321 ARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY 380
+ TL + +K S+ ++ GK L+ F V ++
Sbjct: 236 -KIMGNTLATQALQEIKHSLDHGRKTGGK--------------LLM-------FGVGVIV 273
Query: 381 YGLVLNLSNIGGDVYVNTVI--SGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMS 438
G++ LS V +N V+ + E F + ST L L T V G++ + ++
Sbjct: 274 IGVM--LSVFQQFVGINVVLYYAPEIFKTLGASTDIAL----LQTIIV-GVINLTFTVLA 326
Query: 439 ILILLKMGRRRPLCLT---TMAAGVACLVTLAFPQGSWMTISLAMI---GKFAISSSNVV 492
I+ + K G R+PL + MA G+ L T + Q + L+M+ FA+S V
Sbjct: 327 IMTVDKFG-RKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVC 385
Query: 493 MPVYTAELFPTKMR 506
V +E+FP +R
Sbjct: 386 W-VLLSEIFPNAIR 398
|
Length = 479 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 48/346 (13%), Positives = 109/346 (31%), Gaps = 64/346 (18%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVG-- 244
RFGR+R L+ L+ + + + LVLR + G ++ + L +
Sbjct: 58 RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPE 117
Query: 245 --GKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPR 302
G+ L + + LG + + G+ + WR ++ ++ +L
Sbjct: 118 ERGRALGLLSAGFGLGAALGPL-LGGLLASLFGWRAAFLILAILALLAAVLAAL------ 170
Query: 303 WLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLM 362
L K+ + + + L R P++
Sbjct: 171 LLPR-------------------------PPPESKRPKPAEEAPAPLVPAWKLLLRDPVL 205
Query: 363 RLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLS 422
L+ + ++ L+ L + ++ +++G
Sbjct: 206 WLL-----LALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLG---------------- 244
Query: 423 TSCVPGIVEIPAIAMSILILLKMGRRRPL---CLTTMAAGVACLVTLAFPQGSWMTISLA 479
+ G++ + + ++GRRR L L + A + + W+ ++L
Sbjct: 245 ---LAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALL 301
Query: 480 MIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIP 525
++G F + ++L P + R G + + L P
Sbjct: 302 LLG-FGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 58/341 (17%), Positives = 114/341 (33%), Gaps = 54/341 (15%)
Query: 185 GSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVG 244
G R+GR+ ++ S+V +P + + R ++G S +E
Sbjct: 71 GDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWP 130
Query: 245 GKWLTIAGISYLFPVPLGYIAISGIAYYI------HSWRILQWVITAPTIIFLILWWCIP 298
A + +G + ++ Y + WR L ++ P I L L IP
Sbjct: 131 KHLRNKASGLLISGYAVGAV-VAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIP 189
Query: 299 ESPRWLLTMGKTEEAMEVLKDAAR--FNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDL 356
E+ W + +++ + + AN ++ ++M + +GK+
Sbjct: 190 EAEDW----KEKHAGKALVRTMVDILYGGEHRIAN---IVMTLAAAMVQSAGKR------ 236
Query: 357 WRTPLMRLISCVQYVVWFSVYLVYYGLVLN-LSNIGGDVYVNTVISGESFNSTTLSTSSI 415
W T VYLV L N S+ D+ ++ L S
Sbjct: 237 WPT---------------FVYLVVLVLFANLYSHPIQDLL-------PTYLKADLGLSP- 273
Query: 416 LCFHDLSTSCVPGIVEIPAIAMSIL---ILLKMGRRRPLCLTTMAAGVACLVTLAFPQGS 472
+ + + I AI + + +GRR+ + +A + + A
Sbjct: 274 -----HTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANV 328
Query: 473 WMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGAS 513
+ + + ++P + E FPT R G+G +
Sbjct: 329 AVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFT 369
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 432 IPAIAMSILILL------KMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFA 485
++ ++ L + GRRR L + + + L+ L + + + G
Sbjct: 40 AFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG-LG 98
Query: 486 ISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
+ A+ FP + R +G S G+ L P L
Sbjct: 99 GGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL 140
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 7/140 (5%)
Query: 394 VYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILL------KMGR 447
+++ +SG + + + LS S IV ++ ++ LL + GR
Sbjct: 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGR 63
Query: 448 RRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRN 507
RR L L + + L+ + + ++G + AE FP K R
Sbjct: 64 RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLG-LGGGALYPAAAALIAEWFPPKERG 122
Query: 508 LGVGASSVPAGVALILIPYL 527
+G S G+ +L P L
Sbjct: 123 RALGLFSAGFGLGALLGPLL 142
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 9e-04
Identities = 63/266 (23%), Positives = 95/266 (35%), Gaps = 31/266 (11%)
Query: 276 WRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKL 335
WRIL P ++ L IPE+PR+ + K E + D + + A D++
Sbjct: 203 WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVE--QAASDMSAVLQVKIEAEPDEV 260
Query: 336 LKQS--VSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLN----LSN 389
K S V K WR L + WF + + +YG+ LN LS
Sbjct: 261 EKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGS---WFLLDIAFYGVNLNQKVILSA 317
Query: 390 IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRR 449
IG T + E T + I VPG +++ ++ +G R+
Sbjct: 318 IGYSPPAATNNAYEELYKTAVGNLIIAL-----AGTVPG------YWVTVFLVDIIG-RK 365
Query: 450 PLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGK----FAISSSNVVMPVYTAELFPTKM 505
P+ L L F T I FA N + E+FPT+
Sbjct: 366 PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY 425
Query: 506 RNL--GVGASSVPAG--VALILIPYL 527
R+ G+ A+S AG + YL
Sbjct: 426 RSTAHGISAASGKAGAIIGQFGFLYL 451
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 186 SRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFS-GFVLCMEIVG 244
R R+R L+G L +V A +P F L+ RA+ G + +S L +V
Sbjct: 73 GRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGL-AHGVFWSIAAALAARLVP 131
Query: 245 ----GKWLTIAG----ISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTII-FLILWW 295
G+ L + ++ + VPLG + + WR I ++ L+LW
Sbjct: 132 PGKRGRALALVFTGLTLATVLGVPLG-TFLGQLF----GWRATFLAIAVLALLALLLLWK 186
Query: 296 CIPES 300
+P S
Sbjct: 187 LLPPS 191
|
Length = 394 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 444 KMGRRRPL-CLTTMAAGVACLVTLAFPQGSWMTISLA--MIGKFAISSSNVVMPVYTAEL 500
++GRR L T +AA +A + +A T+ + M + EL
Sbjct: 281 RIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFLPEL 340
Query: 501 FPTKMRNLGVG---------ASSVPAGVALILIPY 526
FPT++R G +A L+
Sbjct: 341 FPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| KOG0253|consensus | 528 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0569|consensus | 485 | 100.0 | ||
| KOG0254|consensus | 513 | 99.97 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.97 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.96 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.96 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.96 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.95 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.95 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.95 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.95 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.95 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.95 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.95 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.95 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.95 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| KOG0252|consensus | 538 | 99.94 | ||
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.94 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.94 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.94 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.94 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.93 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.93 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.92 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.92 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.92 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.92 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.92 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.92 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.92 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.91 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.91 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.91 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.91 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.91 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.91 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.91 | |
| KOG2532|consensus | 466 | 99.91 | ||
| PRK10504 | 471 | putative transporter; Provisional | 99.9 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.9 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.9 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.9 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.9 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.9 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.9 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.9 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.9 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.9 | |
| KOG1330|consensus | 493 | 99.89 | ||
| PRK10054 | 395 | putative transporter; Provisional | 99.89 | |
| KOG2533|consensus | 495 | 99.89 | ||
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.89 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.89 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.89 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.88 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.88 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.88 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.88 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.88 | |
| KOG2615|consensus | 451 | 99.87 | ||
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.87 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.86 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.85 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.85 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.85 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.85 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.85 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.84 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.84 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.84 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.81 | |
| KOG3764|consensus | 464 | 99.81 | ||
| KOG2504|consensus | 509 | 99.81 | ||
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.8 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.8 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.8 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.8 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.8 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.79 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.78 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.76 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.76 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.76 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.72 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.72 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.7 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.69 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.68 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.67 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.66 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.64 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.64 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.63 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.58 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.57 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.54 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.53 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.5 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.5 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.48 | |
| KOG4686|consensus | 459 | 99.47 | ||
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.43 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.36 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.29 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.26 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.22 | |
| KOG2563|consensus | 480 | 99.12 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.09 | |
| KOG2325|consensus | 488 | 99.07 | ||
| KOG2816|consensus | 463 | 99.07 | ||
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.04 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.02 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.01 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.91 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.9 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.89 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.88 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.85 | |
| KOG3626|consensus | 735 | 98.81 | ||
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.81 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.79 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.78 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.76 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.72 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.66 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.66 | |
| KOG3098|consensus | 461 | 98.65 | ||
| PRK09952 | 438 | shikimate transporter; Provisional | 98.65 | |
| KOG0253|consensus | 528 | 98.64 | ||
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.62 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.59 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.59 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.58 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.55 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.54 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.51 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.5 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.49 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.48 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.47 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.46 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.46 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.45 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.44 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.44 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.43 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.43 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.42 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.41 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.41 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.4 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.4 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.39 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.38 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.38 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.38 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.36 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.35 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.34 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.34 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.33 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.32 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.32 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.32 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.32 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.31 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.29 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.28 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.27 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.26 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.26 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.25 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.25 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.2 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.19 | |
| KOG2615|consensus | 451 | 98.17 | ||
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.16 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.15 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.15 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.14 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.14 | |
| KOG0569|consensus | 485 | 98.12 | ||
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.12 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.11 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.11 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.09 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.07 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.07 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.06 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.06 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.06 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.06 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.06 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.05 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.05 | |
| KOG2504|consensus | 509 | 98.04 | ||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.03 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.01 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.0 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 97.99 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.97 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.95 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 97.94 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.94 | |
| KOG0255|consensus | 521 | 97.94 | ||
| PRK11043 | 401 | putative transporter; Provisional | 97.94 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.9 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.9 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.9 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.88 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.87 | |
| KOG3764|consensus | 464 | 97.86 | ||
| KOG1330|consensus | 493 | 97.85 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.85 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.84 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.8 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.78 | |
| KOG3574|consensus | 510 | 97.76 | ||
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.74 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.72 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.71 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 97.71 | |
| KOG3810|consensus | 433 | 97.7 | ||
| KOG0252|consensus | 538 | 97.7 | ||
| KOG0254|consensus | 513 | 97.67 | ||
| KOG4332|consensus | 454 | 97.64 | ||
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 97.6 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.6 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.59 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.56 | |
| KOG3762|consensus | 618 | 97.55 | ||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.53 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.48 | |
| KOG4686|consensus | 459 | 97.43 | ||
| KOG3762|consensus | 618 | 97.41 | ||
| KOG0637|consensus | 498 | 97.36 | ||
| KOG1237|consensus | 571 | 97.19 | ||
| KOG2532|consensus | 466 | 97.07 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.05 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 96.89 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.87 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.73 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.72 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.66 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.6 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.54 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.52 | |
| KOG2533|consensus | 495 | 96.26 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.2 | |
| KOG1479|consensus | 406 | 96.18 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 95.54 | |
| KOG2816|consensus | 463 | 95.32 | ||
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.21 | |
| KOG2325|consensus | 488 | 95.06 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.83 | |
| KOG3880|consensus | 409 | 94.63 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 94.5 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 93.68 | |
| KOG3098|consensus | 461 | 93.53 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 92.19 | |
| KOG2563|consensus | 480 | 92.01 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 91.04 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 90.01 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 89.79 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 88.55 | |
| KOG3880|consensus | 409 | 88.09 | ||
| KOG0637|consensus | 498 | 87.49 |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=436.49 Aligned_cols=453 Identities=34% Similarity=0.556 Sum_probs=373.5
Q ss_pred CCCCcHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCccccCCCCCCCCCcccccccccccccCCCCCCCCCCccccCCCc
Q psy3965 40 GEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVFTRDDEKFGYNPCAIKDLDYS 119 (535)
Q Consensus 40 g~~G~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 119 (535)
|+|||||++++++++++.++.++|.++.+|++.+|||||+.|+. .+.+.++|.+.+.|.. .+.++++|.+++.+..
T Consensus 1 g~~g~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~c~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 76 (505)
T TIGR00898 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCRLPDA-ANLSSRCELNLTLPRL---PDGRPESCLRFMVDQW 76 (505)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCCCc-ccCChHhHhceeccCC---CCCCCCCCccccccch
Confidence 79999999999999999999999999999999999999998853 3455566878776642 2334689988876531
Q ss_pred c-hh----hhhcccCCCCCCcccCC-ceEecCCCCcCceeccCCC--------cchhHHHhhhhhhcceeeccCCccccc
Q psy3965 120 Q-SY----HDLLLESENVTTTRPCQ-KWLYDTNNFGDTIISEPES--------HSYEMQSDFDVQLSKLYTGQSNLDDTG 185 (535)
Q Consensus 120 ~-~~----~~~~~~~~~~~~~~~c~-~w~y~~~~~~~~i~~~~~l--------~~~~s~~~~g~~ig~~~~G~~~~~~l~ 185 (535)
. .. .+............+|. .|.|+.+...+++++|||+ ++..+++++|.++|+++.|+ ++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~-----l~ 151 (505)
T TIGR00898 77 ANPSLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGY-----LS 151 (505)
T ss_pred hhhcccccccchhcccCCCCCCCCCCCcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHH-----hh
Confidence 1 10 00000000123445676 4999987778999999999 57889999999999999999 99
Q ss_pred cccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHH
Q psy3965 186 SRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIA 265 (535)
Q Consensus 186 Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i 265 (535)
||+|||++++++.++.+++.++.+++++++.+++.|++.|++.++..+...+++.|++|+++|+++.++.+.++.+|.++
T Consensus 152 Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~ 231 (505)
T TIGR00898 152 DRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL 231 (505)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhh
Q psy3965 266 ISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKE 345 (535)
Q Consensus 266 ~~~l~~~~~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (535)
++.+++.+.+||+.+++.+++.++..+..+++||||+|+..+++.+++++.+++.++.|+...+.+..+.. .+++.+
T Consensus 232 ~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~ 308 (505)
T TIGR00898 232 LPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLS---LEKDLS 308 (505)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhh---hhhhhh
Confidence 99999988899999999999888877777889999999999999999999999999888765543322111 111111
Q ss_pred ccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCc
Q psy3965 346 DSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSC 425 (535)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (535)
+++++.++++++++|.++...+.....|+.....||++.++.+.++.+.+....+.+
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 365 (505)
T TIGR00898 309 SSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISG----------------------- 365 (505)
T ss_pred hccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHHHHHH-----------------------
Confidence 112245788999999999999888888999889999988888777666554444444
Q ss_pred cCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHhhhhhhhcccccchh
Q psy3965 426 VPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGS-WMTISLAMIGKFAISSSNVVMPVYTAELFPTK 504 (535)
Q Consensus 426 ~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 504 (535)
+.++++.++.+++.||+|||+.+.++.++.+++++++.+.++.. +......++.+++.+..++..+.+.+|.+|++
T Consensus 366 ---~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 366 ---LVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442 (505)
T ss_pred ---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 77889999999999999999999999988888888777765542 44455566677777777889999999999999
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 505 MRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 505 ~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
.|++++|+.+++.++|++++|++.++
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~~ 468 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVYL 468 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999873
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=377.92 Aligned_cols=451 Identities=32% Similarity=0.488 Sum_probs=370.4
Q ss_pred CCchhhhhhcCCCCcHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCccccCCCCCCCCCcccccccccccccCCCCCCCC
Q psy3965 30 TNEDPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVFTRDDEKFGYN 109 (535)
Q Consensus 30 ~~~~~l~~~~g~~G~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (535)
+.||.++. .|++|+||+...++..+..+..+.|....+|....|+|+|. +... .. + ..+
T Consensus 2 ~~~~~~~~-~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~----------~~-------~--~~~ 60 (521)
T KOG0255|consen 2 DLDEILSS-VGDFGRYQKLLLLLLGLPSIFSALHSFAQIFLAFVPDHHCT-EWGC----------LN-------D--AED 60 (521)
T ss_pred chHHHHHH-hcCCcHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCCchhh-hhhc----------cc-------C--Ccc
Confidence 45777775 99999999999999999999999999999999999998875 1100 00 0 224
Q ss_pred CCccccCCCcc-hhhhhcccC-CCCCCcccC-CceEecCCCCcCceeccCCC--------cchhHHHhhhhhhcceeecc
Q psy3965 110 PCAIKDLDYSQ-SYHDLLLES-ENVTTTRPC-QKWLYDTNNFGDTIISEPES--------HSYEMQSDFDVQLSKLYTGQ 178 (535)
Q Consensus 110 ~c~~~~~~~~~-~~~~~~~~~-~~~~~~~~c-~~w~y~~~~~~~~i~~~~~l--------~~~~s~~~~g~~ig~~~~G~ 178 (535)
+|.++..+... ......... ........| .+|.|+.+....++..|+++ .+.++++++|.++|++++|+
T Consensus 61 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~ 140 (521)
T KOG0255|consen 61 SCLVYWDPTLDPANPLNWPSWKKWLLVIVICLDGWVYDYGSSVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGP 140 (521)
T ss_pred cceecccCccCcCCccccccccccccccccccceeEecCCCCcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhhee
Confidence 56554321100 000000000 000223445 46999988777778877777 77889999999999999999
Q ss_pred CCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhh
Q psy3965 179 SNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFP 258 (535)
Q Consensus 179 ~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 258 (535)
++||+|||+++++++++..++.++.++++|++.+++.|++.|++.++...++..++.|+.++++|+.+..+....
T Consensus 141 -----lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~ 215 (521)
T KOG0255|consen 141 -----LSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFF 215 (521)
T ss_pred -----hHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996677
Q ss_pred hhhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHH-
Q psy3965 259 VPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLK- 337 (535)
Q Consensus 259 ~~lG~~i~~~l~~~~~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~- 337 (535)
+..|.+..+..+++..+||+.+++..++.++.++++++.||||||+..+++.+++.+.++++++.|+.....+......
T Consensus 216 ~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~ 295 (521)
T KOG0255|consen 216 FVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLEL 295 (521)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHH
Confidence 7777777778888888999999999999998877777778999999999999999999999999885443332222111
Q ss_pred HhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccc
Q psy3965 338 QSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILC 417 (535)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (535)
....+.....+++..+.++++.|.+++.++...+.|+.....||++.+....++.+.+.+..+.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~--------------- 360 (521)
T KOG0255|consen 296 LLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSG--------------- 360 (521)
T ss_pred HhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHH---------------
Confidence 11111222223446689999999999999999999999999999999999999999988888777
Q ss_pred cccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHHHHhhhhhh
Q psy3965 418 FHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSW--MTISLAMIGKFAISSSNVVMPV 495 (535)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 495 (535)
..+.++....+...|++|||.....+..+.++++++..+.+.... .......++.++.+..+...+.
T Consensus 361 -----------~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (521)
T KOG0255|consen 361 -----------LVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFL 429 (521)
T ss_pred -----------HHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999988876543 5777788888999999899999
Q ss_pred hcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 496 YTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 496 ~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
+.+|++|+..|+.+.+.+++.+++|++++|++..+..
T Consensus 430 ~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~ 466 (521)
T KOG0255|consen 430 YSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLR 466 (521)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987543
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=323.34 Aligned_cols=420 Identities=20% Similarity=0.309 Sum_probs=327.0
Q ss_pred CCCCCCchhhhhhcCCCCcHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCccccCCCCCCCCCcccccccccccccCCCC
Q psy3965 26 SPVTTNEDPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVFTRDDEK 105 (535)
Q Consensus 26 ~~~~~~~~~l~~~~g~~G~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (535)
.+..+.||.++. +| |||||+.++......++..++..+...++.+- -.| .|.
T Consensus 58 ~k~~tv~ea~~a-ig-fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~--l~~------------~w~------------ 109 (528)
T KOG0253|consen 58 AKSFTVDEAMNA-IG-FGRFQWYLFFVAGMGWMADAMEMMLLSLILPA--LDE------------VWG------------ 109 (528)
T ss_pred cceeeehhhhhh-cC-cccchhhHHHHhhhHHHHHHHHHHHHHHHHHH--HHh------------hhc------------
Confidence 344556889986 77 99999999999999999999999999888532 111 110
Q ss_pred CCCCCCccccCCCcchhhhhcccCCCCCCcccCCceEecCCCCcCceeccCCCcchhHHHhhhhhhcceeeccCCccccc
Q psy3965 106 FGYNPCAIKDLDYSQSYHDLLLESENVTTTRPCQKWLYDTNNFGDTIISEPESHSYEMQSDFDVQLSKLYTGQSNLDDTG 185 (535)
Q Consensus 106 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~c~~w~y~~~~~~~~i~~~~~l~~~~s~~~~g~~ig~~~~G~~~~~~l~ 185 (535)
.++-+.+++.+..+.|..+|+..+|. ++
T Consensus 110 -----------------------------------------------~s~~q~~llt~~v~~gmllga~~w~l-----~~ 137 (528)
T KOG0253|consen 110 -----------------------------------------------PSEGQAPLLTLSVFLGMLVGAMVWGL-----SA 137 (528)
T ss_pred -----------------------------------------------hhhhhhhHHHHHHHhhhhhhhhhhhe-----eh
Confidence 01112267788899999999999999 99
Q ss_pred cccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHH
Q psy3965 186 SRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIA 265 (535)
Q Consensus 186 Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i 265 (535)
|++|||+.+.+.....++...+.++++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..|.+|.++
T Consensus 138 d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ 215 (528)
T KOG0253|consen 138 DTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVF 215 (528)
T ss_pred hhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 899999999999999999887666 889999999
Q ss_pred HHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHH------HH
Q psy3965 266 ISGIAYYI---HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDK------LL 336 (535)
Q Consensus 266 ~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~------~~ 336 (535)
...+++.. .||||.....+.|..++....+++|||||++..+|+.++|.+.++++++.|+++.|....+ ..
T Consensus 216 ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e 295 (528)
T KOG0253|consen 216 EALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQE 295 (528)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhh
Confidence 99998876 3999999888888888888889999999999999999999999999999999886644311 11
Q ss_pred HHhhh--h--hhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCccCCceeeeeeEEc-cccCccccc
Q psy3965 337 KQSVS--S--MKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISG-ESFNSTTLS 411 (535)
Q Consensus 337 ~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 411 (535)
++..+ + .+..++.+....+++. |.+|+..+..+..|+.+.+.||+..+....+....-....... ++.....-.
T Consensus 296 ~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~ 374 (528)
T KOG0253|consen 296 QEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRA 374 (528)
T ss_pred hhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhh
Confidence 11110 0 1111223445666664 8899999999999999999999987765543221100000000 000000000
Q ss_pred cccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh
Q psy3965 412 TSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNV 491 (535)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (535)
.-..+.-.++...++..+.+++|.++.++++||+|||+.+...+++.+++.+++....... ...++.+.+.++.+..+.
T Consensus 375 ~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn-~~tvllf~arafisg~fq 453 (528)
T KOG0253|consen 375 NCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN-AYTVLLFTARAFISGAFQ 453 (528)
T ss_pred cCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHhchhe
Confidence 0000111222333444588999999999999999999999999999999888877665443 556677888899999999
Q ss_pred hhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHh
Q psy3965 492 VMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWD 529 (535)
Q Consensus 492 ~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~ 529 (535)
+.|+|+.|++|+..|+++.|.++.++++|+++.|+++.
T Consensus 454 vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~ 491 (528)
T KOG0253|consen 454 VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAM 491 (528)
T ss_pred EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999983
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=356.27 Aligned_cols=420 Identities=20% Similarity=0.244 Sum_probs=309.6
Q ss_pred CCCchhhhhhcCCCCcHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCccccCCCCCCCCCcccccccccccccCCCCCCC
Q psy3965 29 TTNEDPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVFTRDDEKFGY 108 (535)
Q Consensus 29 ~~~~~~l~~~~g~~G~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (535)
..+|+++++ .| +|++|+++++++++..+..++....+.++.+. ..+...
T Consensus 150 ~~~d~~l~~-~~-~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~--i~~~~g--------------------------- 198 (742)
T TIGR01299 150 QQYELIIQE-CG-HGRFQWALFFVLGLALMADGVEVFVVGFVLPS--AEKDLC--------------------------- 198 (742)
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhC---------------------------
Confidence 456889988 77 69999999999999998888877766665321 111000
Q ss_pred CCCccccCCCcchhhhhcccCCCCCCcccCCceEecCCCCcCceeccCCCcchhHHHhhhhhhcceeeccCCcccccccc
Q psy3965 109 NPCAIKDLDYSQSYHDLLLESENVTTTRPCQKWLYDTNNFGDTIISEPESHSYEMQSDFDVQLSKLYTGQSNLDDTGSRF 188 (535)
Q Consensus 109 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~c~~w~y~~~~~~~~i~~~~~l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~ 188 (535)
. +.-..+++.+++++|.++|++++|+ ++||+
T Consensus 199 ----------------------------------l----------s~~~~g~l~s~~~lG~iiG~li~G~-----LsDR~ 229 (742)
T TIGR01299 199 ----------------------------------I----------PDSGKGMLGLIVYLGMMVGAFFWGG-----LADKL 229 (742)
T ss_pred ----------------------------------C----------CHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHh
Confidence 0 0001178889999999999999999 99999
Q ss_pred CchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHH
Q psy3965 189 GRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISG 268 (535)
Q Consensus 189 Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~ 268 (535)
|||+++++++++.+++.++++++++++.++++|++.|++.++..++..+++.|++|+++|++..+++..++.+|.++++.
T Consensus 230 GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~ 309 (742)
T TIGR01299 230 GRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAA 309 (742)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHhhh----------------cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCC--Ch
Q psy3965 269 IAYYI----------------HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTL--PA 330 (535)
Q Consensus 269 l~~~~----------------~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~--~~ 330 (535)
++..+ .+||+++++.+++.++.++..+++||||+|+..++|.+|+.+.++++++.|++.. +.
T Consensus 310 la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~ 389 (742)
T TIGR01299 310 MAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPE 389 (742)
T ss_pred HHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchh
Confidence 65432 2699999999998888888888999999999999999999999999988776432 11
Q ss_pred hh-H-HHHHHhhhhh------hhccC---------------CcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhcc
Q psy3965 331 NT-D-KLLKQSVSSM------KEDSG---------------KKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNL 387 (535)
Q Consensus 331 ~~-~-~~~~~~~~~~------~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (535)
+. . +..+.....+ ..... ...+++++|+ +.+++.++.+++.|++..+.||++..+.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~-~~~~~~tl~l~~~wf~~~~~yygl~~w~ 468 (742)
T TIGR01299 390 KVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFN-PEVREITIKLMGVWFTLSFGYYGLSVWF 468 (742)
T ss_pred HHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 0111100000 00000 0013556665 5667888888899999999999998886
Q ss_pred CccC----------------Cceeee----ee---------------EEccccCccccc-------------cc------
Q psy3965 388 SNIG----------------GDVYVN----TV---------------ISGESFNSTTLS-------------TS------ 413 (535)
Q Consensus 388 ~~~~----------------~~~~~~----~~---------------~~~~~~~~~~~~-------------~~------ 413 (535)
+.+- .+.+.. .- +.+..+++.... ..
T Consensus 469 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (742)
T TIGR01299 469 PDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKN 548 (742)
T ss_pred HHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhc
Confidence 6431 000000 00 000000000000 00
Q ss_pred ----------------------------------cc--------cccccCcCCccCceeehhhHHHHHHHHhhcCChhHH
Q psy3965 414 ----------------------------------SI--------LCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPL 451 (535)
Q Consensus 414 ----------------------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l 451 (535)
.. .....+....+.+++.+++.+++++++||+|||+++
T Consensus 549 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l 628 (742)
T TIGR01299 549 CTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRML 628 (742)
T ss_pred cchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 00 000011223344577899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 452 CLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 452 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
.+++++.+++++++.+.++.. ..+++.++.+++.+..++..+++++|++|++.|++++|+.++.+++|++++|++.+.
T Consensus 629 ~~~~~lsai~~ll~~~~~s~~-~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~ 706 (742)
T TIGR01299 629 AGSMVLSCISCFFLSFGNSES-AMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGS 706 (742)
T ss_pred HHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877765543 334444455666666778899999999999999999999999999999999999764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=305.42 Aligned_cols=408 Identities=16% Similarity=0.200 Sum_probs=274.0
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCCccccCCCCCCCCCcccccccccccccCCCCCCCCCCc
Q psy3965 33 DPISNAIGEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVFTRDDEKFGYNPCA 112 (535)
Q Consensus 33 ~~l~~~~g~~G~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 112 (535)
|++++ .+ +||+|+++++++++..+..++......+..+.. .|.... ..+.
T Consensus 3 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~--~~~~~~--------------------------~~~~ 52 (502)
T TIGR00887 3 EEADT-AP-FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKML--GYVYYH--------------------------GKGP 52 (502)
T ss_pred chhhc-cc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcc--------------------------Cccc
Confidence 44565 55 899999999999999999999888887775321 110000 0000
Q ss_pred cccCCCcchhhhhcccCCCCCCcccCCceEecCCCCcCceeccCCCcchhHHHhhhhhhcceeeccCCccccccccCchh
Q psy3965 113 IKDLDYSQSYHDLLLESENVTTTRPCQKWLYDTNNFGDTIISEPESHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKR 192 (535)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~w~y~~~~~~~~i~~~~~l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~ 192 (535)
.++...+++.+.+.+|.++++++.|+ ++||+|||+
T Consensus 53 ----------------------------------------~~~~~~~~~~~~~~ig~~ig~~~~g~-----l~d~~Grr~ 87 (502)
T TIGR00887 53 ----------------------------------------LPSSVSAAVNGSASIGTLAGQLFFGW-----LADKLGRKR 87 (502)
T ss_pred ----------------------------------------chHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhccHH
Confidence 00011268899999999999999999 999999999
Q ss_pred hHHHHHHHHHHhhchhhccch------HHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHH
Q psy3965 193 ALMGSLVCQLVLGAGVAASPW------FEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAI 266 (535)
Q Consensus 193 ~l~~~~~~~~i~~~~~~~~~s------~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~ 266 (535)
++.++.++..++.++++++++ ++.++++|++.|++.++..+....++.|++|+++|+++.++.+....+|.+++
T Consensus 88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g 167 (502)
T TIGR00887 88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888876 78999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhh--------------------------cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHH-HHHHHHHH
Q psy3965 267 SGIAYYI--------------------------HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTE-EAMEVLKD 319 (535)
Q Consensus 267 ~~l~~~~--------------------------~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~-~a~~~l~~ 319 (535)
+.++..+ .+||+++.+.++++++.++..+++||||||+..++|.+ ++++.+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~ 247 (502)
T TIGR00887 168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA 247 (502)
T ss_pred HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence 8776432 26999999999998888888889999999999988875 46666666
Q ss_pred HHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCc---hHHHHHHHHHHHHhhhHHhhhhhhhccCccCCceee
Q psy3965 320 AARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTP---LMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYV 396 (535)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (535)
..+.+..+..++. ++. ++++ +..+.+++++++++ +.++.++.....|+...+.+|+...+.+.+-.+
T Consensus 248 ~~~~~~~~~~~~~----~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~--- 317 (502)
T TIGR00887 248 VLQVKIEAEPDEV----EKA-STAV--EVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA--- 317 (502)
T ss_pred HhccccccCcccc----cch-hccc--cchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH---
Confidence 5432221111110 000 0000 11123567777642 223344444456666666677654433221100
Q ss_pred eeeEEccccCccccccc--cccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC--Ch
Q psy3965 397 NTVISGESFNSTTLSTS--SILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQ--GS 472 (535)
Q Consensus 397 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~--~~ 472 (535)
.+++....... ...........++..++.+++.++++++.||+|||+.++.+..+.+++++++..... ..
T Consensus 318 ------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~ 391 (502)
T TIGR00887 318 ------IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST 391 (502)
T ss_pred ------HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 00100000000 000000000011112456678889999999999999998888777766655544311 11
Q ss_pred HHHHHHHHHHH-HHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 473 WMTISLAMIGK-FAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 473 ~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
.......++.. +......+..+.+.+|.+|++.|+++.|+.+.++++|++++|++....
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l 451 (502)
T TIGR00887 392 HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYL 451 (502)
T ss_pred hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 11112222221 212223456778899999999999999999999999999999887643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=278.39 Aligned_cols=340 Identities=20% Similarity=0.242 Sum_probs=255.4
Q ss_pred CcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc---chHHHHHHHHHHHhhhhhhhHHH
Q psy3965 158 SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS---PWFEGYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 158 l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~---~s~~~l~~~r~l~G~~~~~~~~~ 234 (535)
++.+.+++.+|.++|+++.|. ++||+|||..+.++.++..++.++..++ +++.+++++|++.|+..|.....
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~-----la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~ 136 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGL-----LADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL 136 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH
Confidence 388899999999999999999 9999999999999999988888777654 88999999999999999999999
Q ss_pred HHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-----cchhHHHHHHHHHHHHHHHHhhhcccchhHHHh-cC
Q psy3965 235 GFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-----HSWRILQWVITAPTIIFLILWWCIPESPRWLLT-MG 308 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-----~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~-~~ 308 (535)
...|+.|..|++.||....+.+.+..+|.+++..++.-- ..|++++....+++++..+..+++||||||+.. ++
T Consensus 137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~ 216 (485)
T KOG0569|consen 137 VPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKG 216 (485)
T ss_pred HHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcC
Confidence 999999999999999999999999999999997776432 369999999999999999999999999999998 89
Q ss_pred CHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhh------HHhhhh
Q psy3965 309 KTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSV------YLVYYG 382 (535)
Q Consensus 309 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~ 382 (535)
+.+||++.+++.+..++.+. ..++..+..++++.++++..+++++++++.+|+...+.+...+.+ ...+|.
T Consensus 217 ~~~~A~~sl~~y~G~~~~~~---~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Ys 293 (485)
T KOG0569|consen 217 DEEEARKALKFYRGKEDVEA---EIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYS 293 (485)
T ss_pred CHHHHHHHHHHHhCCCcchh---HHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHH
Confidence 99999999998865443221 112222222222233346778999999999998866665544432 233344
Q ss_pred hhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q psy3965 383 LVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVAC 462 (535)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~ 462 (535)
..++... + +...... ......++..++.++++.+++||.|||++++.+..++.+..
T Consensus 294 t~i~~~a-G-------------~~~~~a~----------~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~ 349 (485)
T KOG0569|consen 294 TSIFKTA-G-------------FTPEEAQ----------YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVAL 349 (485)
T ss_pred HHHHHHc-C-------------CCHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3332211 1 1111000 11112337888999999999999999999999998888877
Q ss_pred HHHHhc---CC-C-hHH---HHHHHHHHHHHHHHH-hhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHh
Q psy3965 463 LVTLAF---PQ-G-SWM---TISLAMIGKFAISSS-NVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWD 529 (535)
Q Consensus 463 ~~~~~~---~~-~-~~~---~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~ 529 (535)
+++... .+ . .|. .++..++..+..+.+ .|+.+.+.+|++|++.|+.+.++..++.++..++-.+...
T Consensus 350 ~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp 425 (485)
T KOG0569|consen 350 LLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP 425 (485)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766543 11 1 222 223333333333332 4888999999999999999999999998888776555443
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=266.98 Aligned_cols=341 Identities=21% Similarity=0.273 Sum_probs=248.4
Q ss_pred CCcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 157 ESHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 157 ~l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
+.+++.+.+.+|.++|+++.|+ ++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|+...+.+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~-----l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~p 164 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGR-----LGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcch
Confidence 3489999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc----chhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHH
Q psy3965 237 VLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH----SWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEE 312 (535)
Q Consensus 237 ~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~ 312 (535)
.|++|..|++.||...+..+....+|.+++..+++... +||..+.+..+++++..+..+++||||+|+.++++.++
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~ 244 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEE 244 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHH
Confidence 99999999999999999999999999999988888874 79999999999999987778899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh-hhhhhhccCccC
Q psy3965 313 AMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV-YYGLVLNLSNIG 391 (535)
Q Consensus 313 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 391 (535)
+++.++++...++.+...+.+... .....+......+..++++++ |..++..+........+.+. +....++...+.
T Consensus 245 a~~~l~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if 322 (513)
T KOG0254|consen 245 AKRSLKRLRGLSPEDVEVELELLK-IKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIF 322 (513)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHH-HHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHH
Confidence 999999987755333333322222 111111111122224566666 54444444333333222222 111111111110
Q ss_pred CceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC--
Q psy3965 392 GDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFP-- 469 (535)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~-- 469 (535)
...+..... ...+++.++..+++.+++.++.||+|||+.++.+...+.++++++....
T Consensus 323 ---------~~~g~~~~~-----------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~ 382 (513)
T KOG0254|consen 323 ---------KSAGLKSDT-----------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVF 382 (513)
T ss_pred ---------HhcCCCCch-----------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 000010000 0112233477888889999999999999999999999888888776441
Q ss_pred --C-------ChHHHHHHHHH--HHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHH
Q psy3965 470 --Q-------GSWMTISLAMI--GKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIP 525 (535)
Q Consensus 470 --~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P 525 (535)
. ..+..++..++ ..+..+. .++.+.+.+|.+|.+.|+.+.++.....++.+.+-.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~-g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~ 448 (513)
T KOG0254|consen 383 ALYYPNSSKGAGWLAIVFLCLFIFSFAIGW-GPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLIS 448 (513)
T ss_pred hccCCCcccchhHHHHHHHHHHHHHHhccc-ccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHH
Confidence 1 11233333222 2233332 367778999999999999999999999887766543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-35 Score=304.15 Aligned_cols=345 Identities=24% Similarity=0.308 Sum_probs=248.6
Q ss_pred ccCCCcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc---hHHHHHHHHHHHhhhhhh
Q psy3965 154 SEPESHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP---WFEGYLVLRAMLGFVCVS 230 (535)
Q Consensus 154 ~~~~l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~---s~~~l~~~r~l~G~~~~~ 230 (535)
++...++..+..++|..+|++++|. ++||+|||+.++++.++..++.++.++++ +++.+.++|++.|++.|+
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~-----~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~ 118 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGF-----LADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGG 118 (451)
T ss_pred hHHHHHHHHHHHHhhhccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3444588999999999999999999 99999999999999999999999999999 999999999999999999
Q ss_pred hHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cc---hhHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy3965 231 IVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HS---WRILQWVITAPTIIFLILWWCIPESPRWL 304 (535)
Q Consensus 231 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~---Wr~~~~~~~~~~l~~~~~~~~lpesp~~l 304 (535)
..+....++.|..|+++|++..++.+.++.+|.+++..++... .+ ||..+.+.++++++..+..+++||||||+
T Consensus 119 ~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL 198 (451)
T PF00083_consen 119 AYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWL 198 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 9999999999999999999999999999999999988877654 24 99999999999988888888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhh-hhh
Q psy3965 305 LTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY-YGL 383 (535)
Q Consensus 305 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 383 (535)
..++|.+||++.++++++.+..+ ++.++ ..++.++.++.+.+++++++++..++..+..+..+....... +..
T Consensus 199 ~~~~~~~~A~~~l~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 272 (451)
T PF00083_consen 199 LSKGRDEEAEKVLRKLRGKEIED--EEIEE----IKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFI 272 (451)
T ss_pred ccccccccccccccccccccccc--ccccc----cccccccccccceeeeeccccccccccccccccccccccccccccc
Confidence 99999999999999854332111 11111 111111111122667888888664444444433333322221 111
Q ss_pred hhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q psy3965 384 VLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACL 463 (535)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~ 463 (535)
..+.+.+..+...... .....+.++..+++.+++.++.||+|||+.++.+..+++++++
T Consensus 273 ~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~ 331 (451)
T PF00083_consen 273 FYYSPSIFENAGISNS---------------------FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSL 331 (451)
T ss_pred cccccccccccccccc---------------------ccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111111110000000 0111223367778888888999999999999998888877776
Q ss_pred HHH--h--cCCC----hHHHHHHHHHHHHHHH-HHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 464 VTL--A--FPQG----SWMTISLAMIGKFAIS-SSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 464 ~~~--~--~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
.+. . ..+. ....+++..+..+..+ ...+..+.++.|++|++.|+++.|++...++++++++|.+...
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~ 407 (451)
T PF00083_consen 332 ILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPY 407 (451)
T ss_pred ccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 664 1 1222 1222222222222222 2246677999999999999999999999999999988876543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=256.22 Aligned_cols=333 Identities=16% Similarity=0.231 Sum_probs=222.9
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc------------chHHHHHHHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS------------PWFEGYLVLRAMLGF 226 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~------------~s~~~l~~~r~l~G~ 226 (535)
+++.+++++|.+++++++|+ ++||+|||++++++.++..++.++++++ +.++.++++|+++|+
T Consensus 58 ~~~~s~~~ig~~~~~~~~G~-----l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~ 132 (479)
T PRK10077 58 GFCVASALIGCIIGGALGGY-----CSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI 132 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh
Confidence 88999999999999999999 9999999999999999999888877763 235678999999999
Q ss_pred hhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-----------cchhHHHHHHHHHHHHHHHHhh
Q psy3965 227 VCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-----------HSWRILQWVITAPTIIFLILWW 295 (535)
Q Consensus 227 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-----------~~Wr~~~~~~~~~~l~~~~~~~ 295 (535)
+.|+..+...+++.|++|+++|++++++.+.+..+|.++++.++..+ .+||+.|++.+++.++..+..+
T Consensus 133 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 133 GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY 212 (479)
T ss_pred hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776543 2799999998888777666678
Q ss_pred hcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhh
Q psy3965 296 CIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFS 375 (535)
Q Consensus 296 ~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 375 (535)
++||+|+|+..+++.+++++..++..+.++ ..+..+...... +++... .+..+... ............+.
T Consensus 213 ~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~ 282 (479)
T PRK10077 213 FVPETPRYLMSRGKQEQAEGILRKIMGNTL---ATQALQEIKHSL---DHGRKT---GGKLLMFG-VGVIVIGVMLSVFQ 282 (479)
T ss_pred cCCCCcHHHHHcCCHHHHHHHHHHHcCChh---HHHHHHHHHHHH---HHhhhh---hhhhcchh-HHHHHHHHHHHHHH
Confidence 899999999888888888776665432110 010000011000 000000 01111110 11111111111111
Q ss_pred hHHhhhhh----hhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHH
Q psy3965 376 VYLVYYGL----VLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPL 451 (535)
Q Consensus 376 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l 451 (535)
....++.. .......+.+..... ......++..+++.++++++.||+|||+.+
T Consensus 283 ~~~~~~~~~~~~p~i~~~~g~~~~~~~-----------------------~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~ 339 (479)
T PRK10077 283 QFVGINVVLYYAPEIFKTLGASTDIAL-----------------------LQTIIVGVINLTFTVLAIMTVDKFGRKPLQ 339 (479)
T ss_pred HHhChhHHHHHHHHHHHHcCCCCchHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 11111111 111111111110000 000112266778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC--CChH-HHHHHHHHHHHHHHHH-hhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHH
Q psy3965 452 CLTTMAAGVACLVTLAFP--QGSW-MTISLAMIGKFAISSS-NVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527 (535)
Q Consensus 452 ~~~~~~~~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i 527 (535)
+.+.++.+++.+++.... +..+ ......++..++.+.. .+..+.++.|.+|++.|+++.|+.+.+.++|++++|++
T Consensus 340 i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 419 (479)
T PRK10077 340 IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWT 419 (479)
T ss_pred HHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888776665431 2221 2222222222333322 25678999999999999999999999999999988766
Q ss_pred Hh
Q psy3965 528 WD 529 (535)
Q Consensus 528 ~~ 529 (535)
..
T Consensus 420 ~p 421 (479)
T PRK10077 420 FP 421 (479)
T ss_pred hH
Confidence 54
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-29 Score=258.95 Aligned_cols=313 Identities=17% Similarity=0.161 Sum_probs=210.2
Q ss_pred hHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHH--------HHHHHHHHhhhhhhhHH
Q psy3965 162 EMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEG--------YLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 162 ~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~--------l~~~r~l~G~~~~~~~~ 233 (535)
.++.+++..+|++++|+ ++||+|||+++.+++++++++++++++++|+.. ++++|+++|++.|+..+
T Consensus 63 ~~~~~l~~~ig~~~~G~-----l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~ 137 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGM-----LGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYT 137 (490)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHH
Confidence 47888999999999999 999999999999999999999999999999875 89999999999999999
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-----------cchhHHHHHHHHHHHHHHHHhhhcccchh
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-----------HSWRILQWVITAPTIIFLILWWCIPESPR 302 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-----------~~Wr~~~~~~~~~~l~~~~~~~~lpesp~ 302 (535)
...+++.|++|+++|+++.++.+.+..+|.++++.+...+ .+||+.|++.++++++.+++...+||+|+
T Consensus 138 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~ 217 (490)
T PRK10642 138 GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPA 217 (490)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChh
Confidence 9999999999999999999999988888888877654322 38999999987766666666677899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhh
Q psy3965 303 WLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYG 382 (535)
Q Consensus 303 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (535)
|...+++.++.. + +...+.++.++++++++ ..+ ........++.....+|+
T Consensus 218 ~~~~~~~~~~~~----------~-----------------~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 268 (490)
T PRK10642 218 FQQHVDKLEQGD----------R-----------------EGLQDGPKVSFKEIATK-HWR-SLLTCIGLVIATNVTYYM 268 (490)
T ss_pred HHHHHHhhhhhc----------c-----------------ccccccccCCHHHHHHH-hHH-HHHHHHHHHHHHHHHHHH
Confidence 853322111100 0 00000112245555553 112 222222222223333333
Q ss_pred hhhccCc-----cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHH
Q psy3965 383 LVLNLSN-----IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMA 457 (535)
Q Consensus 383 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 457 (535)
...+.+. ++.+...... ......++.+++.++.+++.||+|||+.+..+.++
T Consensus 269 ~~~~~p~~l~~~~g~s~~~~~~-----------------------~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 325 (490)
T PRK10642 269 LLTYMPSYLSHNLHYSEDHGVL-----------------------IIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVA 325 (490)
T ss_pred HHHHHHHHHHHhcCCCHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3222221 1111100000 00111255677888899999999999988777654
Q ss_pred HHHHHHH-HHhc-CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 458 AGVACLV-TLAF-PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 458 ~~i~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
..+..+. +... ........+..++.+++.+...+....+..|.+|++.|+++.|+......+++.++|++.+..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l 401 (490)
T PRK10642 326 LFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWL 401 (490)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222 2222 222333333344444555555566777888999999999999987777888888888887653
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=248.51 Aligned_cols=346 Identities=12% Similarity=0.157 Sum_probs=218.6
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.+.+++|+++ +++.+++++++.+++++.|+ ++||+|||+++..++++.+++.+++++++|++.+++.|++
T Consensus 31 ~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~-----l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 105 (412)
T TIGR02332 31 GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNI-----MLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRIL 105 (412)
T ss_pred HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4567777777 88899999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---------cchhHHHHHHHHHHHHH-HHH
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---------HSWRILQWVITAPTIIF-LIL 293 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---------~~Wr~~~~~~~~~~l~~-~~~ 293 (535)
.|++.+...+....++.|++|+++|+++.++++.+.++|.++++.++..+ .+||+.|++.+++.++. .+.
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887654 28999999988877664 445
Q ss_pred hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHH
Q psy3965 294 WWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVW 373 (535)
Q Consensus 294 ~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 373 (535)
++++||+|+. .+.-.++.++..++..+.+..+.++.. + ..+++....+..+++++ ++.++...+...+..
T Consensus 186 ~~~~~~~p~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 255 (412)
T TIGR02332 186 WFWLDDSPDK--AKWLDEEDKKALKEMIDNDQLTLEQPE----G---AFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLT 255 (412)
T ss_pred hhccCCCccc--CCCCCHHHHHHHHHHHHhccccccccc----c---ccccccccHHHHHHHhc-ChHHHHHHHHHHHHH
Confidence 6778999842 000011111111111111110000000 0 00000000011233444 344433332222221
Q ss_pred hhh-HHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhH-H
Q psy3965 374 FSV-YLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRP-L 451 (535)
Q Consensus 374 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~-l 451 (535)
... .+..+...+ .++.+. +++....+ .......++.+++.++.+++.||++||+. .
T Consensus 256 ~~~~~~~~~~p~~-l~~~~~-----------~~s~~~~~----------~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~ 313 (412)
T TIGR02332 256 NTLSAINIWTPQI-LQSFNQ-----------GSSNIMIG----------LLAAIPQFCTIFGMIWWSRHSDRLKERKHHT 313 (412)
T ss_pred HHHHHHHHHHHHH-HHhcCC-----------CCcHHHhH----------HHhhHHHHHHHHHHHHHHHHhcccCccHHHH
Confidence 111 112222222 222110 00000000 01112337788899999999999997764 3
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 452 CLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 452 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
.......+++.++. .........+...++..++.....+..+....|.+|++.|+++.|+.+...++|++++|.+.+..
T Consensus 314 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i 392 (412)
T TIGR02332 314 ALPYLFAAAGWLLA-SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGIL 392 (412)
T ss_pred HHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 33333333333222 22222222222222222333223344456667889999999999999999999999999988654
Q ss_pred h
Q psy3965 532 N 532 (535)
Q Consensus 532 ~ 532 (535)
.
T Consensus 393 ~ 393 (412)
T TIGR02332 393 K 393 (412)
T ss_pred c
Confidence 3
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=246.43 Aligned_cols=330 Identities=15% Similarity=0.096 Sum_probs=217.2
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+++.+++.++..+++++.|. ++||+|||++++++.++.+++.++.+++++++.+++.|++.|++.+...+...++
T Consensus 50 g~~~~~~~~~~~~~~~~~G~-----l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 124 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGL-----WGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAY 124 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 78889999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc-----chhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH-----SWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEA 313 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~-----~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~a 313 (535)
+.|++|+++|+++.++.+.+..+|.++++.++..+. +||+.+++.+++.++..+....+||++++...+++.++.
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (405)
T TIGR00891 125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALV 204 (405)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhh
Confidence 999999999999999999999999999998876652 499999987777666666667789987754322221111
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh-----hhhhhhccC
Q psy3965 314 MEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV-----YYGLVLNLS 388 (535)
Q Consensus 314 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 388 (535)
++..++..+ .+ + .. +. ..++.....++..+++ +................ .+...+...
T Consensus 205 ~~~~~~~~~---~~-~-~~----~~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (405)
T TIGR00891 205 RTMVDILYG---GE-H-RI----AN------IVMTLAAAMVQSAGKR--WPTFVYLVVLVLFANLYSHPIQDLLPTYLKA 267 (405)
T ss_pred hhHHHHHhc---cc-h-hh----hh------hhhhhhHHhhhhhhhh--hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 111111100 00 0 00 00 0000000011101111 11111111111111111 111111111
Q ss_pred ccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc
Q psy3965 389 NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAF 468 (535)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~ 468 (535)
..+.+......+ ....+++.+++.++.+++.||+|||+.+..+..+.++..+.....
T Consensus 268 ~~g~s~~~~~~~-----------------------~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 324 (405)
T TIGR00891 268 DLGLSPHTVANI-----------------------VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI 324 (405)
T ss_pred HhCCCHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh
Confidence 122111110000 012226788899999999999999998887776654443333333
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 469 PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
....+......++.++......+....+..|.+|++.|+++.|+.+.+..+|+.++|.+.+...+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 325 GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444556777889999999999999999999999999999999876544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=240.49 Aligned_cols=312 Identities=10% Similarity=0.048 Sum_probs=209.8
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+++||++ +++.+.+++++++++++.|+ ++||+|||++++.+......+.+....+++++.+++.|++
T Consensus 14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~-----l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 88 (368)
T TIGR00903 14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGL-----LLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLL 88 (368)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6788888888 78889999999999999999 9999999998776665555544333444799999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHH-HHHHhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTII-FLILWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~-~~~~~~~lpe 299 (535)
+|++.+. .......++|++|+++|+++.++.+.+..+|.++++.++..+ .+||+.|++.++++++ ..+.++++||
T Consensus 89 ~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 89 AALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred HHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999886 556666679999999999999999999999999999998877 3999999997777666 4445677899
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV 379 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 379 (535)
+|++. ++..+ ..+ ....+++++++|.++...+..++ ....
T Consensus 168 ~p~~~---~~~~~-------------------~~~--------------~~~~~~~ll~~~~~~~~~~~~~~----~~~~ 207 (368)
T TIGR00903 168 LPFQA---AEGFG-------------------FKD--------------AVKEFGALAGRKDLWIIGAILGF----GVAL 207 (368)
T ss_pred CCCCC---CCCcc-------------------hHH--------------HHHHHHHHHcChhHHHHHHHHHH----HHHH
Confidence 98752 10000 000 00124577888877655444333 2223
Q ss_pred hhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCCh---hHHH-HHH
Q psy3965 380 YYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRR---RPLC-LTT 455 (535)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr---~~l~-~~~ 455 (535)
+|++..+.+.+-.+...+.. .+ . ...+..+.+.+..+++.||.+|| +... ...
T Consensus 208 ~~~~~~wlp~~L~~~g~s~~-~~---------~-------------~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~ 264 (368)
T TIGR00903 208 FDNLAIWLEAALRPAGLEDI-AG---------D-------------AVALAILAGLIGVAVIPDRVARAGLRSIYIRAAA 264 (368)
T ss_pred HHHHHHHHHHHHHHCCCChH-HH---------H-------------HHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHH
Confidence 33332222221111000000 01 0 00033445556667888887654 3322 233
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 456 MAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 456 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
.+.++.+.++....+ .+..+.+..+.+++....++..+.+.+|.+|++.|+++.|+.+..+++|++++|.+...
T Consensus 265 ~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~ 338 (368)
T TIGR00903 265 LLIAAFFLALAFELN-RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAML 338 (368)
T ss_pred HHHHHHHHHHHHccc-cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHH
Confidence 333444433333322 32334444555566666667788999999999999999999999999999999988753
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=242.45 Aligned_cols=320 Identities=15% Similarity=0.119 Sum_probs=215.8
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+++.++..+++++.|+ ++||+|||+++.++.++.+++.++.+++++++.++++|+++|++.+...+....+
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~-----l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~ 130 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGL-----LADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTY 130 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77889999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAME 315 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~a~~ 315 (535)
+.|++|+++|+++.++...+..+|.++++.+...+ .+||+.+++..++.++........||++++...+.+
T Consensus 131 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------ 204 (426)
T PRK12307 131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS------ 204 (426)
T ss_pred HHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh------
Confidence 99999999999999999999999999998877654 389999988655444443333445676544211000
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhH---HhhhhhhhccCccCC
Q psy3965 316 VLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVY---LVYYGLVLNLSNIGG 392 (535)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 392 (535)
..+ ++ .+...+..+..++++++++.++.........+.... ........+....+.
T Consensus 205 ------~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 263 (426)
T PRK12307 205 ------GKG-KH--------------SQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGF 263 (426)
T ss_pred ------ccc-cc--------------cccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 000 00 000000011245677777776544433222221111 011111222222222
Q ss_pred ceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCh
Q psy3965 393 DVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGS 472 (535)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~ 472 (535)
+...... ...+.+++.+++.++.+++.||++||+.+..+.++.++..+.+...+...
T Consensus 264 ~~~~~~~-----------------------~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (426)
T PRK12307 264 DTGVVSN-----------------------LMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDN 320 (426)
T ss_pred CHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 1110000 00122267788899999999999999998888777666655444433332
Q ss_pred HHHHHHHHHHH-HHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 473 WMTISLAMIGK-FAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 473 ~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
.......+++. +......+..+.++.|.+|++.|+++.|+...+.++|+.++|.+.++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 321 YLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 22222222211 11112234556778999999999999999999999999999999876543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=242.64 Aligned_cols=305 Identities=19% Similarity=0.167 Sum_probs=205.4
Q ss_pred HHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHH--------HHHHHHHHHhhhhhhhHHH
Q psy3965 163 MQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFE--------GYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 163 s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~--------~l~~~r~l~G~~~~~~~~~ 234 (535)
++.+++..+|+++.|+ ++||+|||++++++.++++++++++++++++. .++++|+++|++.|+..+.
T Consensus 71 ~~~~~~~~~g~~~~G~-----l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~ 145 (438)
T PRK09952 71 GVGFLFRPLGGVVFGH-----FGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGG 145 (438)
T ss_pred HHHHHHHhhHHHHHHH-----HHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHH
Confidence 4556778899999999 99999999999999999999999999999987 5889999999999999999
Q ss_pred HHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-----------cchhHHHHHHHHHHHHHHHHhhhcccchhH
Q psy3965 235 GFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-----------HSWRILQWVITAPTIIFLILWWCIPESPRW 303 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-----------~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~ 303 (535)
...++.|+.|+++|++..+..+.++.+|.+++..+...+ .+||+.|++.+++.++........||+|+|
T Consensus 146 ~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~ 225 (438)
T PRK09952 146 AALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEF 225 (438)
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence 999999999999999999999999999998887655432 389999999888776655555678999876
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhh-
Q psy3965 304 LLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYG- 382 (535)
Q Consensus 304 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 382 (535)
...+++.++. +++....+.++++++.+...+.. .+.....+|.
T Consensus 226 ~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~ 269 (438)
T PRK09952 226 EQQQHEQAAA---------------------------------KKRIPVIEALLRHPGAFLKIIAL---RLCELLTMYIV 269 (438)
T ss_pred HHHHhhcccc---------------------------------cccCCHHHHHHHchHHHHHHHHH---HHHHHHHHHHH
Confidence 4222110000 00000111234444433332211 1111112221
Q ss_pred ----hhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 383 ----LVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 383 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
..+....++.+...... .....++..+++.++.|+++||+|||+.+..+.++.
T Consensus 270 ~~~~~~y~~~~~g~s~~~~~~-----------------------~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~ 326 (438)
T PRK09952 270 TAFALNYSTQNLGLPRELFLN-----------------------IGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIG 326 (438)
T ss_pred HHHHHHHHHHhcCCCHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 11111112211110000 000112555677788999999999999888776655
Q ss_pred HHHHHHHHhc--CC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHh-HHHHHHHHHHhhh
Q psy3965 459 GVACLVTLAF--PQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAG-VALILIPYLWDMV 531 (535)
Q Consensus 459 ~i~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-ig~~i~P~i~~l~ 531 (535)
.++.+.+... .. ..+..+...++.+++.+...+..+.+..|.+|++.|+++.|+.+..+. +|+.++|++....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l 403 (438)
T PRK09952 327 TLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAAL 403 (438)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5443322221 22 222333334445566666667788999999999999999999776655 8999999888764
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=245.34 Aligned_cols=345 Identities=18% Similarity=0.189 Sum_probs=230.5
Q ss_pred CCcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc---chHHHHHHHHHHHhhhhhhhHH
Q psy3965 157 ESHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS---PWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 157 ~l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~---~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
+.+++.+++.++..++++++|+ ++||+|||++++++.++..++.+++.++ .+++.+++.|++.|++.+...+
T Consensus 72 ~~~~~~~~~~~~~~i~~~~~g~-----l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~ 146 (481)
T TIGR00879 72 LWGLVVSIFLVGGFIGALFAGW-----LSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASA 146 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH-----hhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHh
Confidence 3489999999999999999999 9999999999999999999999988554 4566899999999999999999
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHH---hhh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhc
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIA---YYI---HSWRILQWVITAPTIIFLILWWCIPESPRWLLTM 307 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~---~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~ 307 (535)
....++.|++|+++|+++.++.+.+..+|.++++.++ ... .+||+.|++.++..++..+..+++||+|+++..+
T Consensus 147 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~ 226 (481)
T TIGR00879 147 LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGK 226 (481)
T ss_pred HHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHc
Confidence 9999999999999999999999999999999999998 443 3899999997777777777778899999998888
Q ss_pred CCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhh-hhhhhccCCcccchhhccCc--hHHHHHHHHHHHHhhhHHhh----
Q psy3965 308 GKTEEAMEVLKDAARFNDKTLPANTDKLLKQSV-SSMKEDSGKKVEVLDLWRTP--LMRLISCVQYVVWFSVYLVY---- 380 (535)
Q Consensus 308 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~---- 380 (535)
++.+++++..++..+.+.. ..+..+...... ..+.+.+..+..+.++++.. ..++......+.++......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (481)
T TIGR00879 227 GRVEEARKSLARLRGTSGE--DKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIM 304 (481)
T ss_pred CChHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehH
Confidence 8877766655544322211 111111111000 00001111111233333321 12233333333333222111
Q ss_pred hhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHH
Q psy3965 381 YGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGV 460 (535)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i 460 (535)
+.........+.+.... . ....+..++.+++.++.+++.||+|||+.+..+..+.++
T Consensus 305 ~~~~~~~~~~g~~~~~~-------------~----------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 361 (481)
T TIGR00879 305 YYSPTIFENAGVSTDHA-------------F----------LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI 361 (481)
T ss_pred HHHHHHHHHcCCCchHH-------------H----------HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 11122222222211000 0 011122266788999999999999999999888777777
Q ss_pred HHHHHHhc---CCC------hHHHHHHHHHHHHHHHH-HhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 461 ACLVTLAF---PQG------SWMTISLAMIGKFAISS-SNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 461 ~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
+++++.+. ... .+..+....+...+.+. ..+....+..|.+|++.|+++.|+.++...+|++++|.+...
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~ 441 (481)
T TIGR00879 362 CLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT 441 (481)
T ss_pred HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665521 111 22222222222222222 235666788999999999999999999999999999988765
Q ss_pred h
Q psy3965 531 V 531 (535)
Q Consensus 531 ~ 531 (535)
.
T Consensus 442 ~ 442 (481)
T TIGR00879 442 M 442 (481)
T ss_pred H
Confidence 3
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-27 Score=236.49 Aligned_cols=334 Identities=17% Similarity=0.188 Sum_probs=227.2
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+++.+.+.++.+++.++.|+ ++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+...++
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~-----l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 129 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGP-----LADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNAL 129 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHH-----HHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHH
Confidence 77888999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHH-HHHHhhhcccchhHHHhcCCHHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTII-FLILWWCIPESPRWLLTMGKTEEAM 314 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~-~~~~~~~lpesp~~l~~~~~~~~a~ 314 (535)
+.|++|+++|+++.++...+..+|..+++.++..+ .+||+.+++.++..++ ..+..+++||++++...+ +.++++
T Consensus 130 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 208 (398)
T TIGR00895 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVR 208 (398)
T ss_pred HHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHH
Confidence 99999999999999999999999999999888665 3899999887654444 555567789998876554 444444
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhh----hccCcc
Q psy3965 315 EVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLV----LNLSNI 390 (535)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 390 (535)
+..++....+..+...+. .+++.+++..+...+.+++++..+... .....++.....++... ......
T Consensus 209 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (398)
T TIGR00895 209 RIVNAIAPQMQAEAQSAL-------PEQKATQGTKRSVFKALFQGKTARITV-LLWLLYFMLLVGVYFLTNWLPKLMVEL 280 (398)
T ss_pred HHHHHHHHhccccccccc-------cccccccchhhHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444332221111000 000000011111122233333322222 22222222222222211 222222
Q ss_pred CCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC
Q psy3965 391 GGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQ 470 (535)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~ 470 (535)
+.+....... ..+..++.+++.++.+++.||++||+... ...+.++...++.....
T Consensus 281 g~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 336 (398)
T TIGR00895 281 GFSLSLAATG-----------------------GALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTLF 336 (398)
T ss_pred CCCHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHhh
Confidence 2211111100 11222677889999999999999984444 33444443333333233
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 471 GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
+.+......++.+++.+...+...++..|.+|++.|+++.|+.+.+..+|.+++|.+.+.
T Consensus 337 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 337 SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 444555566677777887888889999999999999999999999999999999998865
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=228.44 Aligned_cols=313 Identities=19% Similarity=0.169 Sum_probs=245.1
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.+|+++ |+..|.|.++..+++++... +.||+.||++++..+.++.++++++++++||+.++++|++
T Consensus 36 Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~-----lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~ 110 (394)
T COG2814 36 LPPIAADLGVSEGAAGQLITAYALGVALGAPLLAL-----LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110 (394)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7899999999 88899999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHH-Hhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLI-LWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~-~~~~lpe 299 (535)
.|+..|..++...++..+..|+++|+++.++...+.+++.++|.+++.++. |||..|++.+..+++.++ .+..+|
T Consensus 111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP- 189 (394)
T COG2814 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP- 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999999999999999999999999999999999998874 999999999998888554 566778
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV 379 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 379 (535)
|+- ..++...+..+..+++|+|..+...+...+........
T Consensus 190 -~~~--------------------------------------~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ 230 (394)
T COG2814 190 -PSE--------------------------------------ISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFAL 230 (394)
T ss_pred -Ccc--------------------------------------CCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhh
Confidence 210 00000111223567889999888877776655555544
Q ss_pred hhhhhhccCccCC-ceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 380 YYGLVLNLSNIGG-DVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 380 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
|..+....++..+ +..... ...+++|++.++|..++|++.|| +.|+.+.....+.
T Consensus 231 ftYi~P~L~~v~g~s~~~vs-----------------------~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~ 286 (394)
T COG2814 231 YTYIRPFLESVAGFSVSAVS-----------------------LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLL 286 (394)
T ss_pred HHhHHHHHHHccCCCHhHHH-----------------------HHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHH
Confidence 4333333332221 111100 11123458899999999999999 8888888888888
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 459 GVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 459 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
++..+.+.+.+++.+......++.++.............++..| +.++.+.++.....++|..+|..+.++.
T Consensus 287 a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~~~~a~sl~~aa~nlgia~GA~lGG~v 358 (394)
T COG2814 287 ALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLGIALGAALGGLV 358 (394)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777666666666666666665555566666444 5678999999888888888887777654
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=240.91 Aligned_cols=301 Identities=16% Similarity=0.123 Sum_probs=198.8
Q ss_pred hHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHH--------HHHHHHHHHhhhhhhhHH
Q psy3965 162 EMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFE--------GYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 162 ~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~--------~l~~~r~l~G~~~~~~~~ 233 (535)
.+..+++..+|++++|+ ++||+|||+++..++++++++++++++++++. .++++|+++|++.|+..+
T Consensus 69 ~~~~~~~~~ig~~~~G~-----l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~ 143 (432)
T PRK10406 69 FAAGFLMRPIGGWLFGR-----IADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYG 143 (432)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHh
Confidence 34556666799999999 99999999999999999999999999999874 699999999999999999
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-----------cchhHHHHHHHHHHHHHHHHhhhcccchh
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-----------HSWRILQWVITAPTIIFLILWWCIPESPR 302 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-----------~~Wr~~~~~~~~~~l~~~~~~~~lpesp~ 302 (535)
...+++.|++|+++|+++.++.+.+...|.++++.+...+ .+||+.|++.++++++.......+||+|+
T Consensus 144 ~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~ 223 (432)
T PRK10406 144 TSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQ 223 (432)
T ss_pred hHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 9999999999999999999998888888888777654332 48999999988887776666666788765
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhh
Q psy3965 303 WLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYG 382 (535)
Q Consensus 303 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (535)
+.. ++ .+++.+++++++++..+...+... +.....+|.
T Consensus 224 ~~~--------~~-------------------------------~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~ 261 (432)
T PRK10406 224 QET--------RA-------------------------------LKEAGSLKGLWRNRRAFIMVLGFT---AAGSLCFYT 261 (432)
T ss_pred HHH--------hh-------------------------------hcccccHHHHHhhHHHHHHHHHHH---HHHHHHHHH
Confidence 310 00 001123566777665443322221 111222222
Q ss_pred hhhcc-----CccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHH
Q psy3965 383 LVLNL-----SNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMA 457 (535)
Q Consensus 383 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 457 (535)
...+. +..+.+........ .+..+...++..+.|++.||++||+.+.....+
T Consensus 262 ~~~~lp~~l~~~~g~s~~~~~~~~-----------------------~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~ 318 (432)
T PRK10406 262 FTTYMQKYLVNTAGMHANVASGIM-----------------------TAALFVFMLIQPLIGALSDKIGRRTSMLCFGSL 318 (432)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 22222 11221110000000 011144566777889999999999987766554
Q ss_pred HHHHHHHHH--hc-CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhH-HHHHHHHHHhhhh
Q psy3965 458 AGVACLVTL--AF-PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGV-ALILIPYLWDMVN 532 (535)
Q Consensus 458 ~~i~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i-g~~i~P~i~~l~~ 532 (535)
.++..+.+. .. .+.......+..+..+..+...+..+.+.+|.+|++.|+++.|+.+..+++ ++...|++..+.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~ 397 (432)
T PRK10406 319 AALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK 397 (432)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence 433332221 11 112222222233333344444456678899999999999999999988775 3445777666543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=234.19 Aligned_cols=309 Identities=18% Similarity=0.151 Sum_probs=216.2
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+++.+.+.++..+++++.|+ ++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.+...+...++
T Consensus 53 g~~~~~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~ 127 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGR-----LADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIAL 127 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 78889999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHH-HHHhhhcccchhHHHhcCCHHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIF-LILWWCIPESPRWLLTMGKTEEAM 314 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~-~~~~~~lpesp~~l~~~~~~~~a~ 314 (535)
+.|++|+++|+++.++.+.+..+|..+++.++..+ .+||+.|++.++..++. .+...++||+|++...+++.++.+
T Consensus 128 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (406)
T PRK11551 128 TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA 207 (406)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh
Confidence 99999999999999999999999999999888665 37999998877655553 344566899876532221110000
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCc---hHHHHHHHHHHHHhhhHHhhhhhhhccCccC
Q psy3965 315 EVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTP---LMRLISCVQYVVWFSVYLVYYGLVLNLSNIG 391 (535)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (535)
+ ..+.+++.+ ......+..................+..+.+
T Consensus 208 ~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 251 (406)
T PRK11551 208 P------------------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQG 251 (406)
T ss_pred h------------------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 000111111 1111111111111111111111111112222
Q ss_pred CceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCC
Q psy3965 392 GDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQG 471 (535)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~ 471 (535)
.+....... ....+++.+++.++.+++.||+|||+.+..+....+++++++...+ +
T Consensus 252 ~s~~~~~~~-----------------------~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~ 307 (406)
T PRK11551 252 LSRSQAGLV-----------------------QIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP-S 307 (406)
T ss_pred CChhhhhHH-----------------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence 211111111 1122267888999999999999999988877666666655554444 3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 472 SWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
.+......++.+++.+...+..+.+..|.+|++.|+++.|+.+....+|+.++|.+.+...
T Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~ 368 (406)
T PRK11551 308 FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLL 368 (406)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence 3344444455556665666788889999999999999999999999999999999987643
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=239.01 Aligned_cols=327 Identities=13% Similarity=0.022 Sum_probs=227.7
Q ss_pred EecCCCCcCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHH
Q psy3965 142 LYDTNNFGDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEG 216 (535)
Q Consensus 142 ~y~~~~~~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~ 216 (535)
.|+.+...|.+.+|+++ +++.+++.++..+++++.|. ++||+|||+++..+.++.+++.++++++++++.
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~-----l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGL-----LADKFGPRAVAMLGGILYGLGFTFYAIADSLAA 93 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHH-----HHHHcCccchhHHhHHHHHHHHHHHHHHHHHHH
Confidence 44445557888888888 88899999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHH-hhh--cchhHHHHHHHHHHHHHHHH
Q psy3965 217 YLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIA-YYI--HSWRILQWVITAPTIIFLIL 293 (535)
Q Consensus 217 l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~-~~~--~~Wr~~~~~~~~~~l~~~~~ 293 (535)
++++|++.|++.+...+.....+.|++| ++|+++.++...+..+|.++++.+. ... .+||+.|++.+++.++..+.
T Consensus 94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 172 (377)
T TIGR00890 94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVL 172 (377)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888888889886 6799999999999999987655444 333 48999999988877775544
Q ss_pred -hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHH
Q psy3965 294 -WWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVV 372 (535)
Q Consensus 294 -~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (535)
+++++|+|+.. .+ ++. +.++++.+.++.++++..+...+.....
T Consensus 173 ~~~~~~~~~~~~---~~----------------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (377)
T TIGR00890 173 GAFLIGYPPGQL---IK----------------TNI----------------EVSVKDYTVWEMLRTPQFWVLYLSFFLN 217 (377)
T ss_pred HHHheecCchhc---cc----------------cCc----------------ccchhhhhHHHHHcCccHHHHHHHHHHH
Confidence 44555543200 00 000 0000111234566666655444333222
Q ss_pred HhhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHH
Q psy3965 373 WFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLC 452 (535)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~ 452 (535)
.+...........+.++++.+...... ...+.+++.+++.++.+++.||+|||+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 274 (377)
T TIGR00890 218 AVSGLLLIGLYKPYGQSLGLSDGFLVL-----------------------AVSISSIFNGGGRPFLGALSDKIGRQKTMS 274 (377)
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 211111111111111222211100000 011222677889999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 453 LTTMAAGVACLVTLAFPQGS-WMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 453 ~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
.+..+.+++.+++...++.. .......++.+++.+...+....+..|.+|++.|+++.|+.+....+|+.++|.+.+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 354 (377)
T TIGR00890 275 IVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHA 354 (377)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777666554322 22223334445555555566678899999999999999999999999999999988754
Q ss_pred h
Q psy3965 532 N 532 (535)
Q Consensus 532 ~ 532 (535)
.
T Consensus 355 ~ 355 (377)
T TIGR00890 355 L 355 (377)
T ss_pred H
Confidence 3
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=218.42 Aligned_cols=322 Identities=16% Similarity=0.132 Sum_probs=227.1
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+++.|.+++.+.++-++.|. ++||.+.|+.+.+++++.++..++.+++++++.+.++.++.|...|.-.|.+...
T Consensus 67 G~i~s~f~i~YG~sKf~~G~-----~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~ 141 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGV-----LSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCART 141 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhh-----hcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 88999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHH--hhhc---chhHHHHHHHHHHHH-HHHHhhhcccchhHHHhcCCHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIA--YYIH---SWRILQWVITAPTII-FLILWWCIPESPRWLLTMGKTEE 312 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~--~~~~---~Wr~~~~~~~~~~l~-~~~~~~~lpesp~~l~~~~~~~~ 312 (535)
+..|+++++||+..++++.+.++|..+.+++. ..+. +||..|++.++++++ .++.++..+|+|+-.-- .+.+|
T Consensus 142 i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~ 220 (448)
T COG2271 142 ITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEE 220 (448)
T ss_pred HHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHH
Confidence 99999999999999999999999999988877 5543 899999999988877 55567778888852100 01111
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHhhhh-hhhccC-----CcccchhhccCchHHHHHHHHHHHHhhhHHh-hhhhhh
Q psy3965 313 AMEVLKDAARFNDKTLPANTDKLLKQSVSS-MKEDSG-----KKVEVLDLWRTPLMRLISCVQYVVWFSVYLV-YYGLVL 385 (535)
Q Consensus 313 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 385 (535)
. ..+..+. +++++. .+.-.+.+++||.++...+..++.+..-... ..+..+
T Consensus 221 ~----------------------~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~Y 278 (448)
T COG2271 221 Y----------------------RGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLY 278 (448)
T ss_pred h----------------------hcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 1 0000000 000111 1122345677888776666555544432211 222222
Q ss_pred ccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhc--CChhHHHHHHHH-HHHHH
Q psy3965 386 NLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM--GRRRPLCLTTMA-AGVAC 462 (535)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~~~~~~-~~i~~ 462 (535)
..+.. +++-..........+ +++++|.+++|+++||+ |||....+.+.+ ..++.
T Consensus 279 L~e~k-------------~~s~~~a~~a~~lfE----------~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~ 335 (448)
T COG2271 279 LSEVK-------------GFSLVKANWAISLFE----------VAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASL 335 (448)
T ss_pred HHHhc-------------CCCHHHHHHHHHHHH----------HHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 22221 222222222222222 78899999999999996 677666554444 44444
Q ss_pred HHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhH-HHHHHHHHHhhh
Q psy3965 463 LVTLAFPQG-SWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGV-ALILIPYLWDMV 531 (535)
Q Consensus 463 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i-g~~i~P~i~~l~ 531 (535)
+.+...++. .++..++.++.++....-.-+.-..+.|..|++..|++.|+...++.+ |+..+.+..++.
T Consensus 336 ~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i 406 (448)
T COG2271 336 VLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYI 406 (448)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceee
Confidence 444455544 344455555555555444345567899999999999999999999998 888887766654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-26 Score=229.74 Aligned_cols=313 Identities=16% Similarity=0.064 Sum_probs=219.4
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.+|+|+ ++..+.+.+++.+++++.|. ++||+|||+++..+.++.+++++++++++|++.++++|++
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ 106 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLML-----LTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG 106 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5677888887 78889999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
+|++.+...+...+++.|++|+++|+++.++...+..+|..++|.++..+ .+||+.|++.+++.++..+. .+.+||
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 186 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPL 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999988765 38999999988877664433 445666
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhH-H
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVY-L 378 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~ 378 (535)
.|+. +.+ ...+.++++|++.++......+....... .
T Consensus 187 ~~~~-----~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (390)
T PRK03545 187 LPSE-----HSG-------------------------------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTA 224 (390)
T ss_pred CCCC-----Ccc-------------------------------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 4320 000 00123456677766544433322222111 1
Q ss_pred hhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 379 VYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
..+...+.....+.+......+ ....+++.+++.++.+++.||++||... .+..+.
T Consensus 225 ~~~~~~~l~~~~g~s~~~~~~~-----------------------~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~ 280 (390)
T PRK03545 225 YSYIEPFVQQVAGLSENFATLL-----------------------LLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALL 280 (390)
T ss_pred HHHHHHHHHHhcCCCccHHHHH-----------------------HHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHH
Confidence 1122222222222221111110 0122267788999999999999988654 444444
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 459 GVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 459 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
.++...+....++.+......++.+++.....+.......+..| +.|+.+.|+.+...++|..+||.+.+...+
T Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~ 354 (390)
T PRK03545 281 LVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL 354 (390)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443333333344444445555555554444555667777777 578999999999999999999999876543
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-28 Score=232.00 Aligned_cols=346 Identities=16% Similarity=0.128 Sum_probs=239.3
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc-------hHHHHHHHHHHHhhhhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP-------WFEGYLVLRAMLGFVCVSI 231 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~-------s~~~l~~~r~l~G~~~~~~ 231 (535)
+.+..+.++|.++|++++|+ ++||+|||+++...+++..+++++++++. -.+++.+.|++.|+|.|+-
T Consensus 87 ~~Vn~~A~vGti~GQl~FG~-----lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 87 ALVNAAALVGTIFGQLFFGW-----LGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCC
Confidence 66778899999999999999 99999999999999999999999887763 2568999999999999999
Q ss_pred HHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc------------------chhHHHHHHHHHHHHHHHH
Q psy3965 232 VFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH------------------SWRILQWVITAPTIIFLIL 293 (535)
Q Consensus 232 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~------------------~Wr~~~~~~~~~~l~~~~~ 293 (535)
+|.+.++.+|..-+++||...+.+.+....|.+.+.+++..+. -||..+.+.++|++..+..
T Consensus 162 YPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~ 241 (538)
T KOG0252|consen 162 YPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF 241 (538)
T ss_pred CcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888887776551 3999999999999999988
Q ss_pred hhhcccchhHHHhc-CCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCccc---chhhccCchHHHHHHHH
Q psy3965 294 WWCIPESPRWLLTM-GKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVE---VLDLWRTPLMRLISCVQ 369 (535)
Q Consensus 294 ~~~lpesp~~l~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~ 369 (535)
.+.+|||+|+-... ++.+.|. +..++..+.+.++. ...+...+.++.+ +...+..+ --+.++..
T Consensus 242 Rl~M~Et~~Y~al~~~~~~~a~-------~d~~k~~~~~~~~~----~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt 309 (538)
T KOG0252|consen 242 RLKMPETARYTALVSKKLKQAA-------GDMKKVLSVDIEAE----STAESDVPPPSNSFGLFSRLFLRW-HGKHLLGT 309 (538)
T ss_pred hhcCCcchhHHHHhhcCHhhhh-------hccccccccccchh----hccccCCCCcccccchHHHHHHHH-HHHHHHHH
Confidence 99999999985222 2222222 22222222211111 1111111111222 23333323 23567777
Q ss_pred HHHHhhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChh
Q psy3965 370 YVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRR 449 (535)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~ 449 (535)
...|+...+.+|+..++....-.+.. +....-.. -...-.+....++.....+||..+...++|++|||+
T Consensus 310 ~~~WFllDiafy~~nL~~s~I~~~ig---------~~~~~~~~-~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~ 379 (538)
T KOG0252|consen 310 AGTWFLLDIAFYGQNLFQSVIFSAIG---------VIPSANTY-HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKY 379 (538)
T ss_pred HHHHHhhhhhhhccccHHHHHHHhhc---------cCCCcchH-HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHH
Confidence 88999999888887766543221110 00000000 000000001111222566778888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCh---HHHHHHH-HHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHH
Q psy3965 450 PLCLTTMAAGVACLVTLAFPQGS---WMTISLA-MIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIP 525 (535)
Q Consensus 450 ~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P 525 (535)
..+.+++++.+..+.+....+.. ....++. +...++...-.....++.+|.+|++.|+++.|+....+..|++++.
T Consensus 380 iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~ 459 (538)
T KOG0252|consen 380 IQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGA 459 (538)
T ss_pred HHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHH
Confidence 99999999999888887765421 1222222 2232333333456778999999999999999999999999999998
Q ss_pred HHHhhh
Q psy3965 526 YLWDMV 531 (535)
Q Consensus 526 ~i~~l~ 531 (535)
+.....
T Consensus 460 ~~F~~~ 465 (538)
T KOG0252|consen 460 FGFLYL 465 (538)
T ss_pred HHhhHh
Confidence 766543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=232.22 Aligned_cols=338 Identities=14% Similarity=0.051 Sum_probs=211.2
Q ss_pred CceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhc-----cchHHHHHH
Q psy3965 150 DTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAA-----SPWFEGYLV 219 (535)
Q Consensus 150 ~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~-----~~s~~~l~~ 219 (535)
|.+.+|+++ +++.+.+++++.+++++.|+ ++||+|||+++..+.++.+++.++.++ +++++.+++
T Consensus 53 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~-----l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (467)
T PRK09556 53 NDMISTYGLSTTELGMIGLGFSITYGVGKTLVGY-----YADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIA 127 (467)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhh-----HhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 344444544 88999999999999999999 999999999998888887777665554 689999999
Q ss_pred HHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh------cchhHHHHHHHHHHHHHHH-
Q psy3965 220 LRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI------HSWRILQWVITAPTIIFLI- 292 (535)
Q Consensus 220 ~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~------~~Wr~~~~~~~~~~l~~~~- 292 (535)
.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|.++++.+...+ .+||..|.+.+++.++..+
T Consensus 128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~ 207 (467)
T PRK09556 128 LWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFI 207 (467)
T ss_pred HHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876432 2699988887777666443
Q ss_pred HhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCccc-chhhccCchHHHHHHHHHH
Q psy3965 293 LWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVE-VLDLWRTPLMRLISCVQYV 371 (535)
Q Consensus 293 ~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 371 (535)
.+++.+++|+.... .+.++ ..+ + ....+ +. ..++++...... .+..++++.++...+..++
T Consensus 208 ~~~~~~~~p~~~~~-~~~~~---~~~------~-~~~~~------~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 269 (467)
T PRK09556 208 GLRYGSDSPEELGW-GKAEE---IFG------E-PISEE------DK-ETESTDMTKWQIFVEYVLKNPVIWLLCFANIF 269 (467)
T ss_pred HHHhCCCChhhcCC-CChhh---ccc------C-ccchh------hh-ccccccCcHHHHHHHHHHcChHHHHHHHHHHH
Confidence 44555666642100 00000 000 0 00000 00 000000000011 1235677776655444333
Q ss_pred HHhhh-HHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhH
Q psy3965 372 VWFSV-YLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRP 450 (535)
Q Consensus 372 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~ 450 (535)
..... ....+...+..+.++.+....... .....++.+++.++.|+++||++||+.
T Consensus 270 ~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~-----------------------~~~~~~~~~ig~~~~G~lsDr~g~r~~ 326 (467)
T PRK09556 270 LYIVRIGIDNWSPVYAFQELGFSKEDAINT-----------------------FTLFEIGALVGSLLWGWLSDLANGRRA 326 (467)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 22221 112222222222233222111110 011226778999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhH-HHHHHHHHH
Q psy3965 451 LCLTTMAAGVACLVTLA-FPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGV-ALILIPYLW 528 (535)
Q Consensus 451 l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i-g~~i~P~i~ 528 (535)
+.....+..++..++.. ..++.+...+..++.++............+.|.+|++.|+++.|+.+.++.+ |++++|.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~ 406 (467)
T PRK09556 327 LVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGL 406 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhH
Confidence 66554433333222222 2223323323333333322222223345667999999999999999999997 779999988
Q ss_pred hhhhh
Q psy3965 529 DMVNS 533 (535)
Q Consensus 529 ~l~~~ 533 (535)
+...+
T Consensus 407 G~i~~ 411 (467)
T PRK09556 407 GMIAD 411 (467)
T ss_pred HHHhc
Confidence 77654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=227.62 Aligned_cols=315 Identities=11% Similarity=-0.001 Sum_probs=217.4
Q ss_pred CCCCcCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHH
Q psy3965 145 TNNFGDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLV 219 (535)
Q Consensus 145 ~~~~~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~ 219 (535)
.+...|.+++|+++ +++.+.+.+++.+++++.|+ ++||+|||+++..+..+.+++.++++++++++.+++
T Consensus 28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~-----l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~ 102 (393)
T PRK09705 28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSW-----LHQHVSERRSVAISLLLIAVGALMRELYPQSALLLS 102 (393)
T ss_pred cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHH-----HHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHH
Confidence 34457889999998 88889999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHhh
Q psy3965 220 LRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI----HSWRILQWVITAPTIIFLILWW 295 (535)
Q Consensus 220 ~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----~~Wr~~~~~~~~~~l~~~~~~~ 295 (535)
.|+++|++.+...+....++.+++| ++|+++++.+..+..+|..+++.++..+ .+||+.+.+.++..++..+.++
T Consensus 103 ~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~ 181 (393)
T PRK09705 103 SALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWW 181 (393)
T ss_pred HHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986 7899999999988888888887776654 3899988776665444333332
Q ss_pred hcc-cchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHh
Q psy3965 296 CIP-ESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWF 374 (535)
Q Consensus 296 ~lp-esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 374 (535)
... +.|+ + +++ ++...++.++++..+...+...+...
T Consensus 182 ~~~~~~~~--------~------------------------------~~~----~~~~~~~~l~~~~~~~l~~~~~~~~~ 219 (393)
T PRK09705 182 WQSAREVA--------S------------------------------SHK----TTTTPVRVVFTPRAWTLGVYFGLING 219 (393)
T ss_pred HHhcCCCc--------c------------------------------ccC----CCcCCcccccCHhHHHHHHHHHHHHH
Confidence 221 1110 0 000 00112334455554443332222221
Q ss_pred hh-HHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHH
Q psy3965 375 SV-YLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCL 453 (535)
Q Consensus 375 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~ 453 (535)
.. ....+...+ ..+.+.+...... ...+.+++.+++.++.+++.||++||+....
T Consensus 220 ~~~~~~~~lp~~-l~~~g~s~~~ag~-----------------------~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~ 275 (393)
T PRK09705 220 GYASLIAWLPAF-YIEIGASAQYSGS-----------------------LLALMTLGQAAGALLMPAMARHQDRRKLLML 275 (393)
T ss_pred HHHHHHHHHHHH-HHHcCCChhhhhH-----------------------HHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 11 111122222 1222222111111 1112337788999999999999999998888
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhccccc-chhhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 454 TTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELF-PTKMRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 454 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
+..+.+++.+++...+...... ..++.+++.+..++.......+.+ |++.|++..|+.+.++.+++.++|.+.++..
T Consensus 276 ~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~ 353 (393)
T PRK09705 276 ALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR 353 (393)
T ss_pred HHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777666554444332222 223445555566666665666666 4678999999999999999999999987655
Q ss_pred h
Q psy3965 533 S 533 (535)
Q Consensus 533 ~ 533 (535)
+
T Consensus 354 ~ 354 (393)
T PRK09705 354 S 354 (393)
T ss_pred H
Confidence 4
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-26 Score=229.90 Aligned_cols=339 Identities=16% Similarity=0.147 Sum_probs=225.6
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.+++++ +++.+++.++..++.++.|. ++||+|||+++..+.++.+++.++.+++++++.++++|++
T Consensus 17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~-----l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (399)
T TIGR00893 17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGW-----LLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVL 91 (399)
T ss_pred HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHH-----HHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4556666665 78899999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
.|++.+...+....++.|++|+++|++..++.+....+|.++++.++..+ .+||+.|++.++..++..+. .+..||
T Consensus 92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (399)
T TIGR00893 92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPD 171 (399)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecC
Confidence 99999999999999999999999999999999999999999999988765 38999999888776664444 445676
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV 379 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 379 (535)
+|+.. +...++.++...+ + .....+++++++.++...++++++|.++...+............
T Consensus 172 ~~~~~--~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (399)
T TIGR00893 172 PPQKA--KWLTEEEKYIVVG-----G----------LLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFF 234 (399)
T ss_pred CCCcc--ccCCHHHHhhcch-----h----------hccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHH
Confidence 65311 1111111100000 0 00000011111223345677888887766555544443333222
Q ss_pred hhhhhhcc-CccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChh--HHHHHH-
Q psy3965 380 YYGLVLNL-SNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRR--PLCLTT- 455 (535)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~--~l~~~~- 455 (535)
......+. +..+.+......+. ...+++.+++.++.+++.||++||+ ......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 291 (399)
T TIGR00893 235 LTWFPTYLVQERGLSILEAGFMA-----------------------SLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKT 291 (399)
T ss_pred HHHHHHHHHHHhcccHHHhhHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 22222222 22222211111110 1122667889999999999999986 111111
Q ss_pred -HHHHH-HHHHHHhcC--CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 456 -MAAGV-ACLVTLAFP--QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 456 -~~~~i-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
....+ ..+...... +..+.......+..++.+ ..+..+.+..|.+|++.|+++.|+.+.+..+|+.++|.+.+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l 370 (399)
T TIGR00893 292 AIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI 370 (399)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhh
Confidence 11111 111111111 122333333344444444 5688889999999999999999999999999999999988765
Q ss_pred hh
Q psy3965 532 NS 533 (535)
Q Consensus 532 ~~ 533 (535)
.+
T Consensus 371 ~~ 372 (399)
T TIGR00893 371 AA 372 (399)
T ss_pred cc
Confidence 43
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=231.91 Aligned_cols=352 Identities=10% Similarity=-0.032 Sum_probs=236.9
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|++.+|+|. +|+.+.|.++..++.+++|+ ++||+|||++++.+.++..++++++++++|++.++++|++
T Consensus 29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~-----l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l 103 (495)
T PRK14995 29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGA-----LGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRAL 103 (495)
T ss_pred HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5777788876 88899999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccc-cCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHH-HHHhhhcc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIV-GGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIF-LILWWCIP 298 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~-~~~~~~lp 298 (535)
+|+|.+...+.....+.+.+ |+++|+++.+++.....+|.+++|.++..+ .+||+.|++.....++. .+..+++|
T Consensus 104 ~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 104 LAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999888888776765 689999999999999999999999999887 38999999887666654 34456678
Q ss_pred cchhHHHhcCCHHHHHHHHH-------HHHHHcCCCCChhhHHH----------HHHhhhhhhhccCCcccchhhccCch
Q psy3965 299 ESPRWLLTMGKTEEAMEVLK-------DAARFNDKTLPANTDKL----------LKQSVSSMKEDSGKKVEVLDLWRTPL 361 (535)
Q Consensus 299 esp~~l~~~~~~~~a~~~l~-------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (535)
|+|.. .+++.+.....+. .....+........... ...-...+.+ .+.+.-..+++|++.
T Consensus 184 ~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~-~~~p~~~~~lf~~~~ 260 (495)
T PRK14995 184 RQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLA-ASRPMIDMRLFTHRI 260 (495)
T ss_pred CCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcCHHHhCCcc
Confidence 76531 1111111111100 00000000000000000 0000001111 111222256788877
Q ss_pred HHHHHHHHHHHHhhhHHhhhhhhhccC-ccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHH
Q psy3965 362 MRLISCVQYVVWFSVYLVYYGLVLNLS-NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSIL 440 (535)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (535)
++...+..+..........+....+.+ ..+.+........ ...+++..++.++.|+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~-----------------------~~~~~~~~~~~~~~g~ 317 (495)
T PRK14995 261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFM-----------------------LPVMVASGFSGPIAGI 317 (495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHH
Confidence 665544444333322222222222222 1222221111110 1122667788899999
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHh
Q psy3965 441 ILLKMGRRRPLCLTTMAAGVACLVTLAFP--QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAG 518 (535)
Q Consensus 441 l~dr~grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 518 (535)
+.||+|+|+.+..+..+.+++.+++.... ...+......++.+++.+...+.....+.+..|++.++.+.++.++...
T Consensus 318 l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (495)
T PRK14995 318 LVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYE 397 (495)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHH
Confidence 99999999988888877777665554432 2333445556677788888777788888899999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy3965 519 VALILIPYLWDMV 531 (535)
Q Consensus 519 ig~~i~P~i~~l~ 531 (535)
+|+.+|+.+.+..
T Consensus 398 lG~~~G~ai~g~i 410 (495)
T PRK14995 398 LGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=222.24 Aligned_cols=314 Identities=16% Similarity=0.083 Sum_probs=226.8
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc-----hHHHHHHHHHHHhhhhhhhHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP-----WFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~-----s~~~l~~~r~l~G~~~~~~~~ 233 (535)
+++.+++.++.++++++.|+ ++||+|||++++.+.++..++.++.++++ +++.+++.|++.|++.+...+
T Consensus 37 g~~~~~~~~~~~i~~~~~G~-----l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 111 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGA-----LADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTP 111 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhH-----HHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999 99999999999999999999888888877 999999999999999999999
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhc--ccchhHHHhcC
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCI--PESPRWLLTMG 308 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~l--pesp~~l~~~~ 308 (535)
...+++.|+.|+++|++..++.+.+..+|.++++.++..+ .+||+.+++.++..++..+..+.+ ||.++. +
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 187 (365)
T TIGR00900 112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS----E 187 (365)
T ss_pred HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc----c
Confidence 9999999999999999999999999999999999988776 389999988777666544443333 332210 0
Q ss_pred CHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhh-hhhhhcc
Q psy3965 309 KTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY-YGLVLNL 387 (535)
Q Consensus 309 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 387 (535)
+ ++ .+.+ ..+ +....++.++++|.++...+............. .....+.
T Consensus 188 ~-~~---------------~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (365)
T TIGR00900 188 I-QA---------------LSNA---VLR----------DTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQ 238 (365)
T ss_pred c-cc---------------cchh---HHH----------HHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 0 00 0000 000 001134556777777665554443333322121 2222222
Q ss_pred Cc-cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q psy3965 388 SN-IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTL 466 (535)
Q Consensus 388 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~ 466 (535)
.+ ++.+......+ ....+++.+++.++.+++.||.+||+.+..+..+.+++++.+.
T Consensus 239 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (365)
T TIGR00900 239 SKYLGRGSTHYGWV-----------------------LAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG 295 (365)
T ss_pred HHHhCCchHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 21 22111111100 0112266778889999999999999988887777777766666
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 467 AFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
+.+++.+...+..++.+++.+...+....+..|..|++.|+++.|+.+....+|..++|.+.+...+
T Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 296 LTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543244555556667777777778888999999999999999999999999999999999876544
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=227.62 Aligned_cols=352 Identities=14% Similarity=0.088 Sum_probs=237.6
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.++++. +++.+.+.++..++.++.|+ ++||+|||++++.+.++..++.++++++++++.++++|++
T Consensus 25 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (485)
T TIGR00711 25 IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGW-----LAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVI 99 (485)
T ss_pred HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHH-----HHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 3455555554 88999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHH-Hhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLI-LWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~-~~~~lpe 299 (535)
+|++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+ .+||+.|++.+.+.++..+ ..+++||
T Consensus 100 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 179 (485)
T TIGR00711 100 QGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPR 179 (485)
T ss_pred HHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999988776 3899999988777666443 4455676
Q ss_pred chhHHHhcCCHHHHHHHHH--------HHHHHcCCCCChhhHHHHHH----------hhhhhhhccCCcccchhhccCch
Q psy3965 300 SPRWLLTMGKTEEAMEVLK--------DAARFNDKTLPANTDKLLKQ----------SVSSMKEDSGKKVEVLDLWRTPL 361 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~--------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~ 361 (535)
+++ ..+++.+.....+. ......++....+....... ....+.+ .+++....++++++.
T Consensus 180 ~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 256 (485)
T TIGR00711 180 DKP--AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELT-DDNPLVDLRLFKYRN 256 (485)
T ss_pred ccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc-CCCCccCHHHHcCCC
Confidence 543 11122222111110 00011111100000000000 0001111 111222245778887
Q ss_pred HHHHHHHHHHHHhhhHHhhhhhhhccC-ccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHH
Q psy3965 362 MRLISCVQYVVWFSVYLVYYGLVLNLS-NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSIL 440 (535)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (535)
++...+..+...+......+..+.+.+ ..+.+....... ....+++.+++.++.++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~-----------------------~~~~~~~~~~~~~~~g~ 313 (485)
T TIGR00711 257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLH-----------------------ILPVGLAPMLSSPIAGR 313 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-----------------------HHHHHHHHHHHHHHHHH
Confidence 766655544443333222222222222 222221111110 01122677889999999
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHh-c-CC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHH
Q psy3965 441 ILLKMGRRRPLCLTTMAAGVACLVTLA-F-PQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPA 517 (535)
Q Consensus 441 l~dr~grr~~l~~~~~~~~i~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~ 517 (535)
+.||+|||+.+..+..+.+++.+++.+ . ++ ..+......++.+++.+..++.......+..|++.|+++.|+.++..
T Consensus 314 l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 393 (485)
T TIGR00711 314 MGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTR 393 (485)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHH
Confidence 999999999998888888777776652 2 22 23344444566777777776666777778899999999999999999
Q ss_pred hHHHHHHHHHHhhh
Q psy3965 518 GVALILIPYLWDMV 531 (535)
Q Consensus 518 ~ig~~i~P~i~~l~ 531 (535)
.+|+.+++.+.+..
T Consensus 394 ~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 394 QLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=223.67 Aligned_cols=334 Identities=13% Similarity=0.052 Sum_probs=210.8
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.+++++ +++.+.+.++..+++++.|+ ++||+|||+++.++.++.+++.++.+++++++.+++.|++
T Consensus 46 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~-----l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 120 (434)
T PRK11663 46 MPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGI-----VSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVL 120 (434)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhH-----HHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555666666 78889999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHH-HHHhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIF-LILWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~-~~~~~~lpe 299 (535)
.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+ .+||+.|++.+++.++. ++..++++|
T Consensus 121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999998877665 38999999888766653 444566788
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccch-----hhccCchHHHHHHHHHHHHh
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVL-----DLWRTPLMRLISCVQYVVWF 374 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~ 374 (535)
+|++...+...++.++ . .+ ..++. ++++.+.+ ..++++.++...+.......
T Consensus 201 ~p~~~~~~~~~~~~~~---------------~----~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (434)
T PRK11663 201 KPQAMGLPSVGEWRHD---------------A----LE--LAQQQ--EGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYV 257 (434)
T ss_pred CHhhcCCCCccccccc---------------c----cc--cchhc--cccCCChhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 8764211100000000 0 00 00000 00011111 24455655544333322222
Q ss_pred hhH-HhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhc--CChhHH
Q psy3965 375 SVY-LVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM--GRRRPL 451 (535)
Q Consensus 375 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l 451 (535)
... +..+...+.....+.+...... .....+++.+++.++.|++.||+ ++|+..
T Consensus 258 ~~~~~~~~~p~~l~~~~g~s~~~a~~-----------------------~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~ 314 (434)
T PRK11663 258 VRAAINDWGNLYMSETLGVDLVTANS-----------------------AVSMFELGGFIGALVAGWGSDKLFNGNRGPM 314 (434)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHH-----------------------HHHHHHHHHHHHHHHHhhhHHHhccCCccHH
Confidence 211 1112222221222222111111 01122267889999999999998 333332
Q ss_pred -HHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHh
Q psy3965 452 -CLTTMAAGVACLVTLAFPQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWD 529 (535)
Q Consensus 452 -~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~ 529 (535)
........+....+...+. .........+..+++.............|.+|++.|+++.|+.+++.++|++++|.+.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g 394 (434)
T PRK11663 315 NLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLA 394 (434)
T ss_pred HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHH
Confidence 2222222222222222222 22222222222222221112233456789999999999999999999999999998887
Q ss_pred hhhh
Q psy3965 530 MVNS 533 (535)
Q Consensus 530 l~~~ 533 (535)
...+
T Consensus 395 ~l~~ 398 (434)
T PRK11663 395 KVLE 398 (434)
T ss_pred HHHH
Confidence 6543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=223.88 Aligned_cols=318 Identities=18% Similarity=0.150 Sum_probs=218.7
Q ss_pred ceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHh
Q psy3965 151 TIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLG 225 (535)
Q Consensus 151 ~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G 225 (535)
.+.++++. +++.+++.++..+++++.|+ ++||+|||++++.+.++.+++.++..++++++.+++.|++.|
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~-----l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 96 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGY-----LSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLG 96 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHH-----HHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccc
Confidence 44555554 88999999999999999999 999999999999999999999777667688889999999999
Q ss_pred hhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHH-hhhcccch
Q psy3965 226 FVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLIL-WWCIPESP 301 (535)
Q Consensus 226 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~-~~~lpesp 301 (535)
++.+...+....++.|++|+++|+++.++.+.+..+|.++++.++..+. +||+.|++.++..++..++ .++++++|
T Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 97 IGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPP 176 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---S
T ss_pred cccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcc
Confidence 9999999999999999999999999999999999999999999998874 8999999998888776553 34555543
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh-h
Q psy3965 302 RWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV-Y 380 (535)
Q Consensus 302 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 380 (535)
+....+.+.+ ++ ++++++....++.+++++.++...+......+..... .
T Consensus 177 ~~~~~~~~~~------------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
T PF07690_consen 177 PPRERESPKE------------------SE-----------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSF 227 (352)
T ss_dssp TTTT--SSTT------------------TT-------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccc------------------cc-----------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhc
Confidence 2100000000 00 0000001112455555554442222222222222222 2
Q ss_pred hhhhhccCccCCc-eeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHH
Q psy3965 381 YGLVLNLSNIGGD-VYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAG 459 (535)
Q Consensus 381 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~ 459 (535)
+...+.....+.+ ........+ +.++..+++.++.+++.||+++|+..........
T Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 284 (352)
T PF07690_consen 228 FLPLYLQEVLGFSGPSQAGLLFS-----------------------IFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLI 284 (352)
T ss_dssp HHHHHCCHHHHCCTHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchhhhhccCCCHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 2222212222222 111110011 1125666778899999999999887777766666
Q ss_pred HHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHH
Q psy3965 460 VACLVTLAFPQ--GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIP 525 (535)
Q Consensus 460 i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P 525 (535)
+..+.+..... +........++.+++.+...+....+..|..|++.|+++.|+.+....+|++++|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 285 LGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 66555544322 2334444555666788888899999999999999999999999999999999998
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-25 Score=224.38 Aligned_cols=339 Identities=15% Similarity=0.011 Sum_probs=217.5
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+++++++ +++.+++.++..+++++.|+ ++||+|||++++.+.++.+++.++.+++++++.+++.|++
T Consensus 18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (379)
T TIGR00881 18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGS-----VSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWAL 92 (379)
T ss_pred hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhH-----HHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4566667666 78889999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHH-HHHhhh---cchhHHHHHHHHHHHH-HHHHhhhcc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAIS-GIAYYI---HSWRILQWVITAPTII-FLILWWCIP 298 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~-~l~~~~---~~Wr~~~~~~~~~~l~-~~~~~~~lp 298 (535)
.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++ .++..+ .+||+.+++.++..++ .++.+++.|
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T TIGR00881 93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLR 172 (379)
T ss_pred HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeC
Confidence 99999999999999999999999999999999999999999999 455443 3899999888776655 444556677
Q ss_pred cchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHH
Q psy3965 299 ESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYL 378 (535)
Q Consensus 299 esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (535)
|+|+....+.+ ++ .. .++. + +...+++++.+..+...+++++++.++...+.....+.....
T Consensus 173 ~~~~~~~~~~~-~~-------------~~-~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (379)
T TIGR00881 173 DSPQSCGLPPA-EE-------------MP-NEEP-D--GDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTG 234 (379)
T ss_pred CCccccccCcc-cc-------------Cc-cccc-c--cccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 76642100000 00 00 0000 0 000000001111122345667777766555544443332222
Q ss_pred h-hhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcC-ChhHHH-HHH
Q psy3965 379 V-YYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMG-RRRPLC-LTT 455 (535)
Q Consensus 379 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g-rr~~l~-~~~ 455 (535)
. .+...+..+..+.+........ .+.+++.+++.++.+++.||.. ||+... ...
T Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 291 (379)
T TIGR00881 235 ILDWSPLYLTQEKGFSKEKASWAF-----------------------TLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF 291 (379)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-----------------------HHHHHHcchhHHHHHHHHHHHcCCcchHHHHHH
Confidence 1 2222222222222211111100 1122677889999999999864 333222 222
Q ss_pred HH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 456 MA-AGVACLVTLAFPQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 456 ~~-~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
.. ..++.......+. ..+......++.++......+....+..|.+|++.|+++.|+.+....+|+.++|.+.+...+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 292 MALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 11 1222222222112 222222333333333333345556788999999999999999999999999999988876543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=220.48 Aligned_cols=323 Identities=10% Similarity=0.057 Sum_probs=211.1
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc--chHHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS--PWFEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~--~s~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
|++.+.+.+++.+++++.|+ ++||+|||+++..+.++.+++.+++.++ .+++.+++.|+++|++.+...+...
T Consensus 79 g~~~s~~~~~~~~~~~~~g~-----l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~ 153 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGY-----LAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATH 153 (465)
T ss_pred hHHHHHHHHHHHHHHcchHH-----HHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHH
Confidence 88999999999999999999 9999999999999999999998887544 5688999999999999999999999
Q ss_pred hhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHh-hhcccchhHHHhcCCHH
Q psy3965 237 VLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI----HSWRILQWVITAPTIIFLILW-WCIPESPRWLLTMGKTE 311 (535)
Q Consensus 237 ~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----~~Wr~~~~~~~~~~l~~~~~~-~~lpesp~~l~~~~~~~ 311 (535)
.++.|++|+++|+++.++...+..+|.++++.++..+ .+||+.|++.+++.++..+.+ ++.+|+|+... +.+.+
T Consensus 154 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~ 232 (465)
T TIGR00894 154 KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKF 232 (465)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHH
Confidence 9999999999999999999999999999999887665 289999999888877755544 44567775210 01111
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhh-HHhhhhhhhccCcc
Q psy3965 312 EAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSV-YLVYYGLVLNLSNI 390 (535)
Q Consensus 312 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 390 (535)
|. +.+ ++..++++++.+.+..++++++++.++...+..+...... .+..|...+..+.+
T Consensus 233 ~~-~~i-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~ 292 (465)
T TIGR00894 233 EK-KYI-------------------NSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVL 292 (465)
T ss_pred HH-HHH-------------------HhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 000 0000011111122345788888887766655444333222 22223333322222
Q ss_pred CCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhH--------HHHHHHHH--HH
Q psy3965 391 GGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRP--------LCLTTMAA--GV 460 (535)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~--------l~~~~~~~--~i 460 (535)
+.+......... +..++.+++.+++|++.||+++|+. +..+.... ++
T Consensus 293 g~s~~~~g~~~~-----------------------~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (465)
T TIGR00894 293 RVSGKENGLLSS-----------------------LPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGI 349 (465)
T ss_pred CcChHHhHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 322211111111 1226778889999999998764321 11111111 11
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 461 ACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
..+.........+..+.+..+.+++.+...+.......|..|. .+|.+.|+.++.+.+|++++|++.+..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~ 419 (465)
T TIGR00894 350 FAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNI 419 (465)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 1111222122333333334444444444444455566677776 799999999999999999999998753
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=216.94 Aligned_cols=313 Identities=13% Similarity=0.068 Sum_probs=214.3
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.+|+++ ++..+++.++..+++++.|. ++||+|||++++.+.++.+++.++++++++++.+++.|++
T Consensus 43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~-----l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 117 (394)
T PRK10213 43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQ-----TIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117 (394)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 4566777776 77778999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
+|++.+...+....++.|++|+++|+++.++...+.++|.+++|.++..+ .+||+.|++.++..++..+. ....||
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999998876 38999999887766654333 334666
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHH-
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYL- 378 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 378 (535)
+|+. + + +.....++.+++|.++...+...........
T Consensus 198 ~~~~-----~-~------------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T PRK10213 198 LPGE-----P-S------------------------------------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAF 235 (394)
T ss_pred CCcc-----c-c------------------------------------cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5320 0 0 0001134566777766554433322222111
Q ss_pred hhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 379 VYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
..+....+..+.+.+....... ....+++.+++.++.+++.||.+|+.......+..
T Consensus 236 ~~~~~p~~~~~~g~s~~~~g~~-----------------------~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~ 292 (394)
T PRK10213 236 FTYIRPVYMNLAGFGVDGLTLV-----------------------LLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLA 292 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 1121222223333222110110 01122667788888899999954443333333323
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 459 GVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 459 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
+..+++.. ..+..+......++.+++.+...+...++..+..|+ .++...++......+|..+||.+.+...+
T Consensus 293 ~~~~~l~~-~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~ 365 (394)
T PRK10213 293 VSALVLTL-WGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALD 365 (394)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333 333444555556666777777767777777787874 45566677777778888888888776543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=221.54 Aligned_cols=298 Identities=14% Similarity=0.085 Sum_probs=183.0
Q ss_pred hhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHH--------HHHHHHHHHhhhhhhhHHHHHhhhcc
Q psy3965 170 QLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFE--------GYLVLRAMLGFVCVSIVFSGFVLCME 241 (535)
Q Consensus 170 ~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~--------~l~~~r~l~G~~~~~~~~~~~~~i~e 241 (535)
.+|+++.|. ++||+|||++++.+.++.+++.++++++++++ .++++|+++|++.+...+....++.|
T Consensus 70 ~ig~~~~G~-----l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e 144 (434)
T PRK15075 70 PLGAIVLGA-----YIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAE 144 (434)
T ss_pred hhHHHHHHH-----HhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHh
Confidence 478889999 99999999999999999999999999999987 46899999999999999999999999
Q ss_pred cccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-----------cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCH
Q psy3965 242 IVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-----------HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKT 310 (535)
Q Consensus 242 ~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-----------~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~ 310 (535)
++|+++|++..++...+..+|..+++.++..+ .+||+.|++..+...+........||++++...++
T Consensus 145 ~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-- 222 (434)
T PRK15075 145 IATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH-- 222 (434)
T ss_pred hCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh--
Confidence 99999999999998888777777777666543 38999998755443322222233344322110000
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHH-HH-HhhhHHhhhhhhhccC
Q psy3965 311 EEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQY-VV-WFSVYLVYYGLVLNLS 388 (535)
Q Consensus 311 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 388 (535)
+.+.+..+++..+++.......... .. .......++...+..+
T Consensus 223 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~ 267 (434)
T PRK15075 223 -----------------------------------RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKT 267 (434)
T ss_pred -----------------------------------ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011112222222211111111 01 1111112222222211
Q ss_pred ccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHH-HHH-
Q psy3965 389 NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACL-VTL- 466 (535)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~-~~~- 466 (535)
..+.+...... ...+.+++.+++.++.|++.||+|||+.+..+..+..+..+ .+.
T Consensus 268 ~~g~~~~~~~~-----------------------~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 324 (434)
T PRK15075 268 VLHLSAADSLL-----------------------VTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW 324 (434)
T ss_pred hcCCCHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 12221110000 01122266778889999999999999988776554433221 111
Q ss_pred hcCCC-hHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHh-HHHHHHHHHHhhhh
Q psy3965 467 AFPQG-SWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAG-VALILIPYLWDMVN 532 (535)
Q Consensus 467 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-ig~~i~P~i~~l~~ 532 (535)
..... ........++.+++.+...+..+.+..|.+|++.|+++.|+.+.++. +++.++|.+.+...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~ 392 (434)
T PRK15075 325 LVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLI 392 (434)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHH
Confidence 11222 22222223334455555556667888999999999999999766555 45788888886543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=217.34 Aligned_cols=314 Identities=16% Similarity=0.114 Sum_probs=217.8
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.+|+++ +++.+.+.++..+++++.|+ ++||+|||+++..+.++..++.++.+++++++.+.+.|++
T Consensus 28 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~-----l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (385)
T TIGR00710 28 FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGP-----LSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFV 102 (385)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhh-----HHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 4556666666 78889999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHH-Hhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLI-LWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~-~~~~lpe 299 (535)
.|++.+...+...+++.|++|+++|++..++.+....+|..+++.++..+ .+||+.+++.++..++..+ .++..||
T Consensus 103 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (385)
T TIGR00710 103 QAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPE 182 (385)
T ss_pred HHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999888765 3899999887776665443 4455677
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV 379 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 379 (535)
+++.. ++ ++ . ++....++++++++.++...+.....+......
T Consensus 183 ~~~~~---~~-~~-------------------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (385)
T TIGR00710 183 TLPYE---AR-IQ-------------------I--------------STYFETFLLLLKSKMFWGYALIYGASFGGFFAF 225 (385)
T ss_pred CCCCc---cc-CC-------------------H--------------HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 54310 00 00 0 000112345667776665554433332222111
Q ss_pred -hhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 380 -YYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 380 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
.+...+.....+.+......+. ...+++.+++.++.+++.||++||+.+..+..+.
T Consensus 226 ~~~~~~~~~~~~g~~~~~~g~~~-----------------------~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 282 (385)
T TIGR00710 226 FSGAPFVYIDIMGVSPSVFGLLF-----------------------ALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILF 282 (385)
T ss_pred HHcChHHHHHHcCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1111111112222211110100 1122677889999999999999999888777666
Q ss_pred HHHHHHHHhcC--C-C-hHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhH-HHHHHHHHH
Q psy3965 459 GVACLVTLAFP--Q-G-SWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGV-ALILIPYLW 528 (535)
Q Consensus 459 ~i~~~~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i-g~~i~P~i~ 528 (535)
.++.+++.... . . .+......++.+++.+...+.......|..| +.|+++.++.+..... |++.+|.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 283 AVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444321 1 2 2233333445566677777778888888888 4689999999888875 445555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=216.81 Aligned_cols=305 Identities=17% Similarity=0.144 Sum_probs=202.2
Q ss_pred HHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHH--------HHHHHHHHHhhhhhhhHHHH
Q psy3965 164 QSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFE--------GYLVLRAMLGFVCVSIVFSG 235 (535)
Q Consensus 164 ~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~--------~l~~~r~l~G~~~~~~~~~~ 235 (535)
..+++..+++++.|+ ++||+|||+++..+.++..++.+++++++++. .+++.|+++|++.+...+..
T Consensus 43 ~~~~~~~i~~~~~G~-----l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 117 (394)
T TIGR00883 43 AGFLARPLGAIVFGH-----FGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGA 117 (394)
T ss_pred HHHHHhhhHHHHhhh-----hhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhcccccccc
Confidence 344555678999999 99999999999999999999999999999875 58899999999999999999
Q ss_pred HhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-----------cchhHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy3965 236 FVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-----------HSWRILQWVITAPTIIFLILWWCIPESPRWL 304 (535)
Q Consensus 236 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-----------~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l 304 (535)
..++.|+.++++|++..++.+.+..+|.++++.++..+ .+||+.+++.++..++.......+||+|++.
T Consensus 118 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (394)
T TIGR00883 118 ALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFE 197 (394)
T ss_pred HHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHH
Confidence 99999999999999999999999999999998876443 3799999887776666555556677776431
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCch--HHHHHHHHHHHHhhhH-Hhhh
Q psy3965 305 LTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPL--MRLISCVQYVVWFSVY-LVYY 381 (535)
Q Consensus 305 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~-~~~~ 381 (535)
..++ ++++.+.+.++.++++. ++.............. ...+
T Consensus 198 ~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
T TIGR00883 198 KAQE------------------------------------KHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTY 241 (394)
T ss_pred HHHh------------------------------------ccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 00011223444555443 2222222221111111 1111
Q ss_pred hhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy3965 382 GLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVA 461 (535)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~ 461 (535)
...+.....+.+....... ..+..+..+++.++.+++.||+|||+.+.....+..+.
T Consensus 242 ~~~~~~~~~g~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 298 (394)
T TIGR00883 242 LPTYLTQTLGLSANSALLV-----------------------LMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALL 298 (394)
T ss_pred HHHHHHHhcCCChhHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 1111112222111100000 01122667788889999999999999777554444333
Q ss_pred H-HHH-Hhc-CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHH-HHHhHHHHHHHHHHhhhh
Q psy3965 462 C-LVT-LAF-PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASS-VPAGVALILIPYLWDMVN 532 (535)
Q Consensus 462 ~-~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~ig~~i~P~i~~l~~ 532 (535)
. ... ... ....+......++.+++.+...+....+..|.+|++.|+++.|+.. ....+|+.++|.+.+...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~ 373 (394)
T TIGR00883 299 AVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV 373 (394)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHH
Confidence 2 222 222 2333444444555666666777888899999999999999999854 445678889998887643
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=212.85 Aligned_cols=326 Identities=12% Similarity=0.035 Sum_probs=199.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc----chHHHHHHHHHHHhhhhhhhHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS----PWFEGYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~----~s~~~l~~~r~l~G~~~~~~~~~ 234 (535)
+++.+.+.++..+++++.|+ ++||+|||++++.+.++.+++.++.+++ .+++.+++.|++.|++.+...+.
T Consensus 66 g~~~~~~~i~~~~~~~~~G~-----l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~ 140 (452)
T PRK11273 66 GFALSGISIAYGFSKFIMGS-----VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 140 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhh-----hhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchH
Confidence 78889999999999999999 9999999999999999999999888775 37889999999999999988888
Q ss_pred HHhhhcccccCcchhhhhhhhhhhhhhHHH-HHHHHHhh---hcchhHHHHHHHHHHHH-HHHHhhhcccchhHHHhcCC
Q psy3965 235 GFVLCMEIVGGKWLTIAGISYLFPVPLGYI-AISGIAYY---IHSWRILQWVITAPTII-FLILWWCIPESPRWLLTMGK 309 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~-i~~~l~~~---~~~Wr~~~~~~~~~~l~-~~~~~~~lpesp~~l~~~~~ 309 (535)
....+.|++|+++|+++.++.+.+..+|.. .+++++.. ..+||+.|++.+++.++ .++..+++||+|+....+ +
T Consensus 141 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~ 219 (452)
T PRK11273 141 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-P 219 (452)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-C
Confidence 888899999999999999999999888864 45543322 24999999998877666 445567788887632111 1
Q ss_pred HHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccc-hhhccCchHHHHHHHHHHHHhhhH-Hhhhhhhhcc
Q psy3965 310 TEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEV-LDLWRTPLMRLISCVQYVVWFSVY-LVYYGLVLNL 387 (535)
Q Consensus 310 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 387 (535)
.++.+ ++ . +.+ .+ ++++++.+.+..+ ..+++++.++...+...+...... ...+...+..
T Consensus 220 ~~~~~---~~------~--~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~ 281 (452)
T PRK11273 220 IEEYK---ND------Y--PDD----YN---EKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 281 (452)
T ss_pred hhhhh---hc------c--ccc----cc---cccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 00 0 000 00 0000000001111 235667776665555444333222 2222222222
Q ss_pred CccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhc--CChhHH-HHHHHHHHHHHHH
Q psy3965 388 SNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM--GRRRPL-CLTTMAAGVACLV 464 (535)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l-~~~~~~~~i~~~~ 464 (535)
+..+.+....... ..+..++.+++.++.|+++||+ +||... +....+..++.++
T Consensus 282 ~~~g~s~~~~~~~-----------------------~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~ 338 (452)
T PRK11273 282 EVKHFALDKSSWA-----------------------YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 338 (452)
T ss_pred HhcCCCHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHH
Confidence 2222211111000 0112266778899999999999 555432 2222333333333
Q ss_pred HHhcCC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHH-HHHHHhhh
Q psy3965 465 TLAFPQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALIL-IPYLWDMV 531 (535)
Q Consensus 465 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i-~P~i~~l~ 531 (535)
+...+. ..+......+..++...........++.|.+|++.|+++.|+.+....+|+.+ +|.+.+..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l 407 (452)
T PRK11273 339 YWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 407 (452)
T ss_pred HHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 322222 22222222222223222222333456779999999999999999998888655 68776544
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-24 Score=214.40 Aligned_cols=313 Identities=14% Similarity=0.077 Sum_probs=209.3
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+++|+|+ ++..+.+.++.++++++.|+ ++||+|||+++..+.++.+++.++++++++++.+++.|++
T Consensus 26 l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l 100 (382)
T PRK10091 26 LTELAHDVGISIPAAGHMISYYALGVVVGAPIIAL-----FSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLV 100 (382)
T ss_pred hHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHH-----HHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 5667777776 78889999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHH-Hhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLI-LWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~-~~~~lpe 299 (535)
.|++.+...+....++.|+.++++|+++.++...+..+|..+++.++..+ .+||+.|++.++..++..+ .++.+||
T Consensus 101 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~ 180 (382)
T PRK10091 101 SGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPD 180 (382)
T ss_pred HHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999998888889999999999999999999999999999998887665 3899999998876665443 3556777
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhh-HH
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSV-YL 378 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 378 (535)
.++ +.+ . +. + ...+.++++..+.......+..... ..
T Consensus 181 ~~~----~~~-~-------------------~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (382)
T PRK10091 181 IRD----EAK-G-------------------GL-----------------R-EQFHFLRSPAPWLIFAATMFGNAGVFAW 218 (382)
T ss_pred CCc----ccc-c-------------------CH-----------------H-HHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 532 000 0 00 0 0012334444433322222111111 11
Q ss_pred hhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 379 VYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
..|...+.....+.+......+ ..+.+++.+++.++.+++.||+|+|+.+..+..+.
T Consensus 219 ~~~~~~~~~~~~g~s~~~~~~~-----------------------~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~ 275 (382)
T PRK10091 219 FSYIKPYMMFISGFSETSMTFI-----------------------MMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFII 275 (382)
T ss_pred HHHHHHHHHHhcCCCHHHHHHH-----------------------HHHHHHHHHHHhHHHheeccccCchhHHHHHHHHH
Confidence 1122222222222222111111 11223678889999999999999999988888777
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh-hhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 459 GVACLVTLAFPQGSWMTISLAMIGKFAISSSNV-VMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 459 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
+++.+++....+..+......++..++.....+ .......+..|.+.++.+ ..+....+|.+++|.+.+...+
T Consensus 276 ~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~ 349 (382)
T PRK10091 276 VLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLT 349 (382)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Confidence 777655544333333333333333343333222 222344455555555544 3466778999999998876443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=211.00 Aligned_cols=296 Identities=15% Similarity=0.068 Sum_probs=200.8
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc--------chHHHHHHHHHHHhhhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS--------PWFEGYLVLRAMLGFVCVS 230 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~--------~s~~~l~~~r~l~G~~~~~ 230 (535)
+++.+++.++.++++++.|. ++||+|||++++.+.++.+++.+.++++ .+++.+++.|+++|++.+.
T Consensus 54 g~~~~~~~~~~~i~~~~~G~-----l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 128 (399)
T PRK05122 54 GLVISLQYLATLLSRPHAGR-----YADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESL 128 (399)
T ss_pred HHHHHHHHHHHHHhchhhHh-----HHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHh
Confidence 88999999999999999999 9999999999999999888876665443 2577899999999999999
Q ss_pred hHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhc
Q psy3965 231 IVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIPESPRWLLTM 307 (535)
Q Consensus 231 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~ 307 (535)
..+....++.|+.|+++|+++.++.+.+..+|.++++.++..+ .+||+.+++.++..++..+.....|++++ .+
T Consensus 129 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 205 (399)
T PRK05122 129 AGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP---VK 205 (399)
T ss_pred hcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC---CC
Confidence 9999999999999999999999999999999999999887765 38999887766655443333332333211 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhH-Hhhhhhhhc
Q psy3965 308 GKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVY-LVYYGLVLN 386 (535)
Q Consensus 308 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 386 (535)
++ +.++++.+++ .+..........+... ...+...+.
T Consensus 206 ~~----------------------------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (399)
T PRK05122 206 GE----------------------------------------RLPFRRVLGR--VWPYGMGLALASIGFGTIATFITLYY 243 (399)
T ss_pred cc----------------------------------------chhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0001111111 1111111111111111 111111111
Q ss_pred cCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q psy3965 387 LSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTL 466 (535)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~ 466 (535)
.+.+.+. .+ ......+++.+++.++.+++.||++||+.+..+..+.+++.+++.
T Consensus 244 -~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 297 (399)
T PRK05122 244 -AARGWDG------AA-------------------LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW 297 (399)
T ss_pred -HHccccc------ch-------------------HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 1111100 00 000012256678889999999999999988888777777766665
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 467 AFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
..+ +.+..+...++.+++.+..++.......|..|++.|+++.|+.+....+|..++|.+.+..
T Consensus 298 ~~~-~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 361 (399)
T PRK05122 298 LAP-SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLV 361 (399)
T ss_pred Hhc-cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3334445556666777766777777778899999999999999999999988888776654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=210.63 Aligned_cols=304 Identities=13% Similarity=0.098 Sum_probs=202.4
Q ss_pred eeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchh---hc-----cchHHHHH
Q psy3965 152 IISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV---AA-----SPWFEGYL 218 (535)
Q Consensus 152 i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~-----~~s~~~l~ 218 (535)
+.+|+|+ +++.+.+.++..+++++.|+ ++||+||||+++.+.++..++.+.. ++ .++++.++
T Consensus 42 l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~-----l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (392)
T PRK12382 42 VHHDLGFGNTMVGIAVGIQFLATVLTRGYAGR-----LADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLV 116 (392)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhH-----HHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHH
Confidence 3456665 88999999999999999999 9999999999999888776655432 22 36889999
Q ss_pred HHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhh
Q psy3965 219 VLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWW 295 (535)
Q Consensus 219 ~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~ 295 (535)
+.|+++|++.+...+...+++.|+.|+++|+++.++.+.+..+|.++++.++..+ .+||+.+.+..+..++......
T Consensus 117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 196 (392)
T PRK12382 117 VGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNG 196 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988765 3899877665544333332222
Q ss_pred hcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhh
Q psy3965 296 CIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFS 375 (535)
Q Consensus 296 ~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 375 (535)
..||.+.. ++ ++.+.++.++ ..+...+...+....
T Consensus 197 ~~~~~~~~---~~----------------------------------------~~~~~~~~~~--~~~~~~~~~~l~~~~ 231 (392)
T PRK12382 197 TVRKVPAH---AG----------------------------------------ERPSLWSVVG--LIWKPGLGLALQGVG 231 (392)
T ss_pred hccCCCCC---cc----------------------------------------cCchHHHHHH--HHHHhHHHHHHHHHH
Confidence 23332110 00 0000111111 001000111101011
Q ss_pred h-HHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHH
Q psy3965 376 V-YLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLT 454 (535)
Q Consensus 376 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~ 454 (535)
. ....+... +..+.+.+. .+ ......+++.+++.++.+++.||+|+|+.+..+
T Consensus 232 ~~~~~~~~~~-~~~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~ 285 (392)
T PRK12382 232 FAVIGTFVSL-YFASKGWAM------AG-------------------FTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVS 285 (392)
T ss_pred HhHHHHHHHH-HHHhcCCch------hH-------------------HHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHH
Confidence 1 11111111 111111110 00 000011255677889999999999999998888
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 455 TMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 455 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
..+.+++.+++...+ +.+......++.+++.+...+.......|.+|++.|+++.|+.+....+|..++|.+.+...
T Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~ 362 (392)
T PRK12382 286 LLVETVGLLLLWLAP-TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA 362 (392)
T ss_pred HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777776665544 33344445555566666666777778889999999999999999999999999998887644
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=215.30 Aligned_cols=311 Identities=14% Similarity=0.045 Sum_probs=192.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+++.+.+.+++.+++++.|+ ++||+|||+++..+.++.+++.++.+++++++.++++|++.|++.+... ....+
T Consensus 74 g~~~~~~~~~~~~~~~~~G~-----l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~ 147 (476)
T PLN00028 74 GNAGIASVSGSIFSRLAMGP-----VCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYW 147 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 66778899999999999999 9999999999999999999999999999999999999999999987654 45667
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHH----hhh--------cchhHHHHHHHHHHHHHHHHhhhcc-cchhHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIA----YYI--------HSWRILQWVITAPTIIFLILWWCIP-ESPRWLL 305 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~----~~~--------~~Wr~~~~~~~~~~l~~~~~~~~lp-esp~~l~ 305 (535)
+.|++|+++|+++.++......+|..+++.+. ..+ .+||+.|++.+++.++..+..++++ +.|+
T Consensus 148 i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~--- 224 (476)
T PLN00028 148 MSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD--- 224 (476)
T ss_pred HHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC---
Confidence 89999999999999998765555555554333 221 2799999998887777555544444 3332
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhH-Hhhhhhh
Q psy3965 306 TMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVY-LVYYGLV 384 (535)
Q Consensus 306 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 384 (535)
++.++.+ + +. +.++.+....+++.++++..+...+..+..+.... ...+...
T Consensus 225 --~~~~~~~-------~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 277 (476)
T PLN00028 225 --GNYRELK-------K-SG-----------------TMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAE 277 (476)
T ss_pred --CchhhHH-------h-cC-----------------ccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1100000 0 00 00000001123455666665444333222211111 1111111
Q ss_pred hccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChh-------HHHHHHHH
Q psy3965 385 LNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRR-------PLCLTTMA 457 (535)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~-------~l~~~~~~ 457 (535)
+.....+.+...... ...+.+++.+++.++.|+++||++||+ .......+
T Consensus 278 ~l~~~~g~s~~~a~~-----------------------~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l 334 (476)
T PLN00028 278 YFYDRFGLSLETAGA-----------------------IAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTL 334 (476)
T ss_pred HHHHhcCCCHHHHHH-----------------------HHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 111222222111111 111223778889999999999998652 22233333
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 458 AGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 458 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
.++.++++... ++.+..+...++.+++.+...+..+.+..+..| +.|+++.|+.+..+.+|++++|++...
T Consensus 335 ~~i~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~ 405 (476)
T PLN00028 335 GGVFCIWLGRA-NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFT 405 (476)
T ss_pred HHHHHHHhccc-chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHh
Confidence 33333333222 233333334444445555555566677777765 689999999999999999999998753
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=210.38 Aligned_cols=315 Identities=11% Similarity=-0.006 Sum_probs=212.0
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.+++++ +++.+.+.+++.+++++.|+ ++||+|||+++..+.++..++.++.+++++++.+++.|++
T Consensus 30 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~-----l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l 104 (394)
T PRK03699 30 MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAW-----LMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFV 104 (394)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 5677788887 67788999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI----HSWRILQWVITAPTIIFLILWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----~~Wr~~~~~~~~~~l~~~~~~~~lpe 299 (535)
.|++.+...+....++.|++|+++|++..+..+....+|..++|.+...+ .+||+.|.+.+++.++..+..++ .+
T Consensus 105 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~ 183 (394)
T PRK03699 105 LGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SE 183 (394)
T ss_pred HHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 99999998888999999999999999999988888888888888776543 38999999888776665443332 22
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhh-HH
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSV-YL 378 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 378 (535)
.|+. .+.+ + +++ ++ ..++.+ ++.++...+...+..... ..
T Consensus 184 ~p~~--~~~~-----------------~--------------~~~-~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 224 (394)
T PRK03699 184 FPAL--GKHA-----------------P--------------KAD-KP----VAKEKW-GIGVLFLAIAALLYILAQLTF 224 (394)
T ss_pred Cccc--cccC-----------------c--------------ccc-Cc----cccccC-ChHHHHHHHHHHHHHHHHHHH
Confidence 2210 0000 0 000 00 001111 222222222111111111 11
Q ss_pred hhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 379 VYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
..+...+..+.++.+......+.. ...++.+++.++.+++.||++||+.+.....+.
T Consensus 225 ~~~~p~~l~~~~g~s~~~~~~~~~-----------------------~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~ 281 (394)
T PRK03699 225 ISWVPEYAQKKFGMSLEDAGNLVS-----------------------NFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLA 281 (394)
T ss_pred HHHHHHHHHHHcCCChHHhhHHHH-----------------------HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 122222222222222211111111 112567889999999999999999888777766
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 459 GVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 459 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
++.++++...++.. ......++.+++.+..++....+..|..|.+ ++...|....+..+|++++|.+.+...+
T Consensus 282 ~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~ 354 (394)
T PRK03699 282 LVLMYLFVNTDDPS-HLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVA 354 (394)
T ss_pred HHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 66555554444333 3344455556666666677777777777644 5677888888999999999999876543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=216.67 Aligned_cols=345 Identities=14% Similarity=0.146 Sum_probs=209.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.+.++..+++++.|+ ++||+|||++++.+.++.+++.++.+++++++.+++.|++.|++.+...+....+
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 132 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGA-----MGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATY 132 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAME 315 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~a~~ 315 (535)
+.|++|+++|+++.++...+..+|.++++.++..+ .+||+.|++.+++.++.++....+||++++...+++.++.++
T Consensus 133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 212 (496)
T PRK03893 133 VIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRT 212 (496)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchh
Confidence 99999999999999999999999999999888766 389999987666555555555667887765332221111111
Q ss_pred HHHHHHHHcCCCCChhhHHHHHH-hhhhhhhccCCcccch-------------hh-c-cCchHHHHHHHHHHHHhhhH--
Q psy3965 316 VLKDAARFNDKTLPANTDKLLKQ-SVSSMKEDSGKKVEVL-------------DL-W-RTPLMRLISCVQYVVWFSVY-- 377 (535)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~l-~-~~~~~~~~~~~~~~~~~~~~-- 377 (535)
..+...+ +++.. ......... ..-...-.......+. .. . ..+..+..........+...
T Consensus 213 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (496)
T PRK03893 213 MVDILYR-GEHRI-INILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLY 290 (496)
T ss_pred HHHHHhc-chhHH-HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhc
Confidence 1110000 00000 000000000 0000000000000000 00 0 00000000000000000000
Q ss_pred ---HhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHH
Q psy3965 378 ---LVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLT 454 (535)
Q Consensus 378 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~ 454 (535)
...+...+.....+.+... .+.. .....++.+++.++.+++.||+|||+.+..+
T Consensus 291 ~~~~~~~lp~~l~~~~g~~~~~-------------~g~~----------~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~ 347 (496)
T PRK03893 291 SWPIQALLPTYLKTDLGYDPHT-------------VANV----------LFFSGFGAAVGCCVGGFLGDWLGTRKAYVCS 347 (496)
T ss_pred cchHHHHHHHHHHhhcCCCHHH-------------HHHH----------HHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 0001111111122221111 0000 1122267788999999999999999988877
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 455 TMAAGVACLVTLAFPQGS-WMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 455 ~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
..+.++..+++....... +......++.++......+....+..|.+|++.|++++|+.+....+|+.++|.+.+...+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~ 427 (496)
T PRK03893 348 LLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ 427 (496)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence 766665554443333322 2222222222222222235666788899999999999999999999999999998876543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=208.66 Aligned_cols=311 Identities=15% Similarity=0.172 Sum_probs=208.4
Q ss_pred eeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHH-HHHHHHHhhchhhccchHHHHHHHHHHHh
Q psy3965 152 IISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMG-SLVCQLVLGAGVAASPWFEGYLVLRAMLG 225 (535)
Q Consensus 152 i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~-~~~~~~i~~~~~~~~~s~~~l~~~r~l~G 225 (535)
+++++++ +++.+.+.++..+.+++.|. ++||+||||.++. +.++..++.++.+++++++.+++.|++.|
T Consensus 24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~-----l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 98 (375)
T TIGR00899 24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLAT-----RSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLS 98 (375)
T ss_pred HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3455555 78888999999999999999 9999999887654 56666677788899999999999999999
Q ss_pred hhhhhhHHHHHhhhcccccCcchhhh--hhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 226 FVCVSIVFSGFVLCMEIVGGKWLTIA--GISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 226 ~~~~~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
.+.+...+....+..|+.|+++|++. .+....+.++|.++++.++..+ .+||+.|++.++..++..+. ++++||
T Consensus 99 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 99 SFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred hhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888888888899999888777654 5777778889999999887766 38999999988876664444 555888
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV 379 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 379 (535)
+|++...+ + ++.+.++.++++..+.........+......
T Consensus 179 ~~~~~~~~-------------------~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T TIGR00899 179 YPRGAPGA-------------------L---------------------TRLEVRGLLASRDTRLLFVACTLMWGCNILY 218 (375)
T ss_pred cccCcccc-------------------c---------------------CcchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence 76421000 0 0001123455555554444433333322222
Q ss_pred hhhhhhc-cCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 380 YYGLVLN-LSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 380 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
......+ ....+.+......+.+ ......+++.++.+++.||+|||+.+..+..+.
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~-----------------------~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 275 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKLAGLMMG-----------------------TAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAG 275 (375)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHH-----------------------HHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHH
Confidence 1111111 1222222111100000 111345667788999999999999888776665
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 459 GVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 459 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
.+..+.+... ++.+......++.+++.+...+....+..|..|++ ++++.|+.+...++|..++|.+.+...
T Consensus 276 ~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 276 VAFYTGLAAD-NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444333 23344444555566666766777778889998875 569999999999999999999887643
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=209.98 Aligned_cols=323 Identities=15% Similarity=0.092 Sum_probs=231.0
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc--hHHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP--WFEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--s~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
+++.+.++.|+++++++.|+ +.||+|-|+++..+.++.++++++...+. +++.+++.|+++|++.|..+++..
T Consensus 76 ~~i~ss~~~G~i~~~iP~g~-----l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~ 150 (466)
T KOG2532|consen 76 GLIFSSFFWGYILGQIPGGY-----LADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIG 150 (466)
T ss_pred HHHHHHHHHHHHHHHcCcHH-----HHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhh
Confidence 89999999999999999999 99999999999999999999999998874 556889999999999999999999
Q ss_pred hhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHhh-hcccchhHHHhcCCHH
Q psy3965 237 VLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI----HSWRILQWVITAPTIIFLILWW-CIPESPRWLLTMGKTE 311 (535)
Q Consensus 237 ~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----~~Wr~~~~~~~~~~l~~~~~~~-~lpesp~~l~~~~~~~ 311 (535)
.+.+.|.|+++|++..++...+..+|.+++.++++.+ .||++.|++.++.+++..++++ +..|+|.- +.+
T Consensus 151 ~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~-- 225 (466)
T KOG2532|consen 151 SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPN-- 225 (466)
T ss_pred ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---CCC--
Confidence 9999999999999999999999999999988777665 3899999999999988766654 45677641 111
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHH-HHhhhHHhhhhhhhccCcc
Q psy3965 312 EAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYV-VWFSVYLVYYGLVLNLSNI 390 (535)
Q Consensus 312 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 390 (535)
..+++.+.+++...++..+++.+.+++++++++.++...+..+. .|....+..|...+.-+.+
T Consensus 226 ----------------is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL 289 (466)
T KOG2532|consen 226 ----------------ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL 289 (466)
T ss_pred ----------------CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 11111111222211222222256789999999988766665543 3445555566666665555
Q ss_pred CCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCC---------hhHHHHHHHHHHHH
Q psy3965 391 GGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGR---------RRPLCLTTMAAGVA 461 (535)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr---------r~~l~~~~~~~~i~ 461 (535)
+.+...+..+.+ ++.+...+..+++|.++||+.+ |..-.++....+++
T Consensus 290 ~f~v~~~G~~sa-----------------------lP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~ 346 (466)
T KOG2532|consen 290 GFDVRETGFLSA-----------------------LPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVF 346 (466)
T ss_pred CCChhhhhHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHH
Confidence 555544444433 2227888999999999998755 33334566666666
Q ss_pred HHHHHhcCCChH-HHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 462 CLVTLAFPQGSW-MTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 462 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
++.+.+.+.... ..+++..+.....+...+-.+.-..+..| +..+..+|+.+.+..+.++++|.+++..
T Consensus 347 l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~ 416 (466)
T KOG2532|consen 347 LLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGII 416 (466)
T ss_pred HHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence 777776665432 33333222222222222222222223244 5679999999999999999999998754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-23 Score=212.03 Aligned_cols=351 Identities=15% Similarity=0.107 Sum_probs=235.4
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.+|+++ +++.+.+.++..++.++.|+ ++||+|||++++.+.++.+++.++++++++++.+++.|++
T Consensus 33 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~-----l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 107 (471)
T PRK10504 33 LPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGW-----LADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVL 107 (471)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5666677777 67789999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
+|++.+...+...+++.|++|+++|+.+.++......+|..++|.++..+ .+||+.|++.....++..+. ....|+
T Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 108 QGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999988766 38999999877665554433 344455
Q ss_pred chhHHHhcCCHHHHHHHHHH-------HHHHcCCCC--Ch-hhHHH-------HHHhhhhhhhccCCcccchhhccCchH
Q psy3965 300 SPRWLLTMGKTEEAMEVLKD-------AARFNDKTL--PA-NTDKL-------LKQSVSSMKEDSGKKVEVLDLWRTPLM 362 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~-------~~~~~~~~~--~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (535)
.+. .+.|.+.+...... ....+.+.. .. ..... ......+++...++.. ..+++|+|.+
T Consensus 188 ~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 263 (471)
T PRK10504 188 YTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALF-SLKLFRTRTF 263 (471)
T ss_pred ccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-CHHHhcccch
Confidence 431 22232222211110 000111100 00 00000 0000001111111112 2357888888
Q ss_pred HHHHHHHHHHHhhhHHhhhhhhhccC-ccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHH
Q psy3965 363 RLISCVQYVVWFSVYLVYYGLVLNLS-NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILI 441 (535)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 441 (535)
+......++.++.....++...++.+ ..+.+........ ....++.+++.++.+++
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~-----------------------~~~~~~~~~~~~~~~~l 320 (471)
T PRK10504 264 SLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMM-----------------------IPMVLGSMGMKRIVVQV 320 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHH
Confidence 77666555555444333333333332 2222221111110 01114556667889999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhH
Q psy3965 442 LLKMGRRRPLCLTTMAAGVACLVTLAFPQG--SWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGV 519 (535)
Q Consensus 442 ~dr~grr~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i 519 (535)
.||+|||+.+..+..+.++..+++.+.+.. .+......++.+++.+..++....+..+..|++.++.+.|+.++...+
T Consensus 321 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 400 (471)
T PRK10504 321 VNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQL 400 (471)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHH
Confidence 999999999988888777776666554322 222233344445666667777788888999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy3965 520 ALILIPYLWDMV 531 (535)
Q Consensus 520 g~~i~P~i~~l~ 531 (535)
|..++|.+.+..
T Consensus 401 g~~ig~~i~g~l 412 (471)
T PRK10504 401 SMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-23 Score=204.73 Aligned_cols=314 Identities=11% Similarity=0.034 Sum_probs=211.4
Q ss_pred CcCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHH
Q psy3965 148 FGDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRA 222 (535)
Q Consensus 148 ~~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~ 222 (535)
..|.+.+|+++ ++..+.+.++..+++++.|+ ++||+|||+++.++.++..++.+.. .+++++.+++.|+
T Consensus 22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPW-----LARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 36788889988 78889999999999999999 9999999999999999888888777 7789999999999
Q ss_pred HHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc-----chhHHHHHHHHHHHHHHHHhhhc
Q psy3965 223 MLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH-----SWRILQWVITAPTIIFLILWWCI 297 (535)
Q Consensus 223 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~-----~Wr~~~~~~~~~~l~~~~~~~~l 297 (535)
+.|++.+...+....++.|+.+ ++|+++.++.+.+..+|..+++.++..+. +||+.|.+.++..++.. ..++
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~~ 172 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--LAWI 172 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHh
Confidence 9999999888888888888886 68999999999999999988887765542 39998877665443322 2234
Q ss_pred ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhH
Q psy3965 298 PESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVY 377 (535)
Q Consensus 298 pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 377 (535)
|++++ +.+ +++...+...++++|+|..+...+...+......
T Consensus 173 ~~~~~------~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (355)
T TIGR00896 173 PQVRR------RVA--------------------------------ANQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYY 214 (355)
T ss_pred hhhcc------ccC--------------------------------CCCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHH
Confidence 44321 000 0000011234566777776554443332222221
Q ss_pred HhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhc-CChhHHHHHHH
Q psy3965 378 LVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM-GRRRPLCLTTM 456 (535)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~ 456 (535)
........+..+.+.+......+ ..+.+++.++++++.+++.||+ +||+.+..+..
T Consensus 215 ~~~~~lp~~~~~~g~~~~~~g~~-----------------------~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~ 271 (355)
T TIGR00896 215 SLIGWLPAILISHGASAATAGSL-----------------------LALMQLAQAASALLIPALARRVKDQRGIVAVLAV 271 (355)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH-----------------------HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Confidence 11111122222222221111111 1122377889999999999999 56666667666
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccc-cchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 457 AAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAEL-FPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 457 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
+.+++.+.+.+.++.. ... ...+.+++.+..++.......+. .+++.++...++.+.+..++.+++|.+.+...+
T Consensus 272 ~~~~~~~~~~~~~~~~-~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 272 LQLVGLCGLLFAPMHG-LWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred HHHHHHHHHHHhhhhH-HHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555544332 222 34455677777777766655544 446777899999999999999999988876544
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=210.01 Aligned_cols=310 Identities=13% Similarity=-0.001 Sum_probs=214.8
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhh-----ccchHHHHHHHHHHHhhhhhhhHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVA-----ASPWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~-----~~~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
+++.+.+.++..+++++.|+ ++||+|||+++..+.++.+++.+..+ ..++++.+++.|++.|++.+...+
T Consensus 55 g~~~~~~~l~~~~~~~~~G~-----l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 129 (417)
T PRK10489 55 GLSVTLTGGAMFIGLMVGGV-----LADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVT 129 (417)
T ss_pred HHHHHHHHHHHHHHHHhhHH-----HhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999 99999999999998887777665543 257889999999999999888889
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCH
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKT 310 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~ 310 (535)
...+++.|+.|+++|+++.++...+..+|..+++.++..+ .+||+.+++.++..++..+..+.+||+++.. +++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~- 206 (417)
T PRK10489 130 ALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPR- 206 (417)
T ss_pred HHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccc-
Confidence 8999999999999999999999999999999999988765 3799999888777666666666777754310 000
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCc-
Q psy3965 311 EEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSN- 389 (535)
Q Consensus 311 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 389 (535)
++ .. ++.+..++.++++|.++...+.............+. ..+..+
T Consensus 207 ~~------------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 253 (417)
T PRK10489 207 EH------------------PL--------------RSLLAGFRFLLASPVVGGIALLGGLLTMASAVRVLY-PALADEV 253 (417)
T ss_pred cc------------------ch--------------HHHHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhh-HHHHHhc
Confidence 00 00 000112344566666554443332221111111111 112222
Q ss_pred cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC
Q psy3965 390 IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFP 469 (535)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~ 469 (535)
.+.+......+. ...+++.+++.++.+++.||.++++.+..+..+.+++.+++...+
T Consensus 254 ~g~~~~~~g~~~-----------------------~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 310 (417)
T PRK10489 254 WQMGAAQIGLLY-----------------------AAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP 310 (417)
T ss_pred cCCChhHhHHHH-----------------------HHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc
Confidence 222211111110 122266778888999999987777777777776666665554433
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 470 QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
+.+...+..++.+++.+...+...++..|..|++.|+++.|+.+....+|..++|.+.+...+
T Consensus 311 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 311 -MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 333444445555566666556667889999999999999999999999999999999876543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-23 Score=210.10 Aligned_cols=316 Identities=9% Similarity=-0.050 Sum_probs=210.9
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchh---hccchHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV---AASPWFEGYLVL 220 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~~~s~~~l~~~ 220 (535)
.|.+++++++ ++..+.+.+++.+++++.|+ +.||+|||+++..+.++..++.+++ +++++++.++++
T Consensus 49 ~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~-----l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~ 123 (438)
T PRK10133 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGI-----LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123 (438)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5667777777 78889999999999999999 9999999999999999999999875 578999999999
Q ss_pred HHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---------------------------
Q psy3965 221 RAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI--------------------------- 273 (535)
Q Consensus 221 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~--------------------------- 273 (535)
|+++|+|.+...+....++.|+.++++|...+++.+..+.+|..+++.++..+
T Consensus 124 r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~ 203 (438)
T PRK10133 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHS 203 (438)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHH
Confidence 99999999999999999999987777777778888999999999888775421
Q ss_pred --cchhHHHHHHH-HHHHHHHHH-hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCC
Q psy3965 274 --HSWRILQWVIT-APTIIFLIL-WWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGK 349 (535)
Q Consensus 274 --~~Wr~~~~~~~-~~~l~~~~~-~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (535)
.+||+.|+... +..++..+. ...+||.+. ++. .+++..+.
T Consensus 204 ~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~-------------------------------~~~~~~~~ 247 (438)
T PRK10133 204 LVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNH-------------------------------SDAKQGSF 247 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----ccc-------------------------------ccccccch
Confidence 24555665433 322222222 233444211 000 00000001
Q ss_pred cccchhhccCchHHHHHHHHHHHHhhhHHh-hhhhhhccC-ccCCceeeeeeEEccccCccccccccccccccCcCCccC
Q psy3965 350 KVEVLDLWRTPLMRLISCVQYVVWFSVYLV-YYGLVLNLS-NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVP 427 (535)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (535)
..+.++++++|.++...+..++........ .|...+..+ ..+.+....... ....
T Consensus 248 ~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~-----------------------~~~~ 304 (438)
T PRK10133 248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANY-----------------------LTGT 304 (438)
T ss_pred hhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH-----------------------HHHH
Confidence 123456778887765544333222221111 122212111 222222111110 0122
Q ss_pred ceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhh
Q psy3965 428 GIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRN 507 (535)
Q Consensus 428 ~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 507 (535)
.++.++++++++++.||+|+|+.+..+..+..+.+++..+.+. . ..+....+.+++.+..+|..++...+.+|++ .+
T Consensus 305 ~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~ 381 (438)
T PRK10133 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG-H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK 381 (438)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC-h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hc
Confidence 2677889999999999999999988887777666655555443 2 2344456678889999999999999998864 56
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 508 LGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 508 ~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
++.++..+ ..+|+.++|.+.+...
T Consensus 382 ~as~l~~~-~~~g~~~~~~i~G~l~ 405 (438)
T PRK10133 382 YGSSFIVM-TIIGGGIVTPVMGFVS 405 (438)
T ss_pred cchhHHhH-HhccchHHHHHHHHHH
Confidence 77777764 4467777777776543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-23 Score=207.34 Aligned_cols=311 Identities=12% Similarity=0.028 Sum_probs=208.6
Q ss_pred CcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 158 SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 158 l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
++++.+.+.+++.++.++.|+ ++||+|||++++.+.++.+++.++++++++. ++.|+++|++.+...|+..+
T Consensus 40 ~~~~~~~~~l~~~l~~~~~G~-----laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a 111 (393)
T PRK11195 40 QPLLQMFFVLAYIVLAPFVGA-----FADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYG 111 (393)
T ss_pred HHHHHHHHHHHHHHHHhhhhH-----hhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 388899999999999999999 9999999999999999999988887777664 78899999999999999999
Q ss_pred hhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhcch--hHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHH
Q psy3965 238 LCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSW--RILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAME 315 (535)
Q Consensus 238 ~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~~W--r~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~a~~ 315 (535)
++.|++|+++|+++.++.+....+|.+++|.+++.+.+| +..+.+.+...++..+..+.+||+|+.. +++.++..+
T Consensus 112 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~ 189 (393)
T PRK11195 112 ILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGARR--PGQSWNPIA 189 (393)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cccCCCHHH
Confidence 999999999999999999999999999999999887544 4444444443344444556788875421 000000000
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCc-cCCce
Q psy3965 316 VLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSN-IGGDV 394 (535)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 394 (535)
..++. ....+.++++|.++.......+.+.......+....+.+. ++.+.
T Consensus 190 ~~~~~-----------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~ 240 (393)
T PRK11195 190 LLRDF-----------------------------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITL 240 (393)
T ss_pred HHHHH-----------------------------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 00000 0112456677776655554444444443333433333322 22221
Q ss_pred eeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHH
Q psy3965 395 YVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWM 474 (535)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 474 (535)
.....+ ....+++.+++.++.+++.||.++|+.+..+.. .++..+.+... ++.+.
T Consensus 241 ~~~G~~-----------------------~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~-~~~~~ 295 (393)
T PRK11195 241 NQPAYL-----------------------QAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ-HSLLP 295 (393)
T ss_pred hHHHHH-----------------------HHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH-hHHHH
Confidence 111111 112226677888888888998888877766643 33333333332 23333
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccchhh-hhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 475 TISLAMIGKFAISSSNVVMPVYTAELFPTKM-RNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
.....++.+++.+...+...+...+..|++. +|.+.++.+....++..++..+....+
T Consensus 296 ~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 296 AYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444555666666665666677778766655 799999999999999998888776554
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=205.78 Aligned_cols=319 Identities=10% Similarity=0.004 Sum_probs=217.4
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.+.+.+|+++ ++..+.+.++..+++++.|. ++||+|||++++.+.++..++.++..++++++.+++.|++
T Consensus 36 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~-----l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 110 (406)
T PRK15402 36 MLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGP-----LSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFL 110 (406)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 4556677776 67789999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHH-Hhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLI-LWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~-~~~~lpe 299 (535)
+|++.+...+....++.|.+|+++|.+..++......+|..++|.++..+ .+||+.+++.++..++..+ .++..||
T Consensus 111 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 190 (406)
T PRK15402 111 QGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPE 190 (406)
T ss_pred HHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999988899999999999999999988888888888888888887665 4899999988877666444 3455677
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHH-
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYL- 378 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 378 (535)
+++.. ++ ++ + . ++...++++++++|.++...+...+.......
T Consensus 191 ~~~~~---~~-~~----------------~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (406)
T PRK15402 191 TAGRV---GE-KL----------------S--L--------------KELGRDYKLVLKNRRFVAGALALGLVSLPLLAW 234 (406)
T ss_pred CCccc---cc-cc----------------c--H--------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 64310 00 00 0 0 00011235667777766554443322221111
Q ss_pred hhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 379 VYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
..+...+.....+.+.... +.... ...++.+++.++.+++.||+++|+.+..+.++.
T Consensus 235 ~~~~p~~~~~~~g~~~~~~-------------g~~~~----------~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~ 291 (406)
T PRK15402 235 IALSPVILISGEQLSSYEY-------------GLLQV----------PVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM 291 (406)
T ss_pred HHHhHHHHHHHhCCCHHHH-------------HHHHH----------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1111111111122211100 00000 111456778889999999999999888887776
Q ss_pred HHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 459 GVACLVTLAFP----QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 459 ~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
+++.+++...+ ...+......++.+++.+...+.......... ++.|++..++.++...+|..++|.+.....
T Consensus 292 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 292 VAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66665554432 22333344445555666665555554444333 478999999999999999999998887643
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=210.28 Aligned_cols=317 Identities=13% Similarity=0.025 Sum_probs=202.4
Q ss_pred cCc-eeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc-hHHHHHHHH
Q psy3965 149 GDT-IISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP-WFEGYLVLR 221 (535)
Q Consensus 149 ~~~-i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~-s~~~l~~~r 221 (535)
.|. +++++|+ +++.+++.++.++++++.|+ ++||+|||+.++++.++..++.++.++++ +++.+++.|
T Consensus 24 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 98 (366)
T TIGR00886 24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGF-----LVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLR 98 (366)
T ss_pred hhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHH-----HHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 453 6777777 88889999999999999999 99999999999999999999999999999 999999999
Q ss_pred HHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-------------cchhHHH-HHHHHHH
Q psy3965 222 AMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-------------HSWRILQ-WVITAPT 287 (535)
Q Consensus 222 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-------------~~Wr~~~-~~~~~~~ 287 (535)
+++|++.+ ..+....++.|++|+++|+++.++......+|..+++.++..+ .+||+.+ +..++..
T Consensus 99 ~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 177 (366)
T TIGR00886 99 LFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGIL 177 (366)
T ss_pred HHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Confidence 99999955 4566788999999999999999998866666666665554322 1799998 4434443
Q ss_pred HH-HHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHH
Q psy3965 288 II-FLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLIS 366 (535)
Q Consensus 288 l~-~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 366 (535)
++ ..+...+.+|+|+. +.++.+. +.+..... .+++.....+++++++..+...
T Consensus 178 ~~~~~~~~~~~~~~~~~-----~~~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 231 (366)
T TIGR00886 178 LLPALLIFFVGADTPPG-----KPATGKL--------SFKGARWS-------------VGTGALGDQLKVFRDRHTWILA 231 (366)
T ss_pred HHHHHHHHHhcccCCcc-----cccchhc--------cccccccc-------------ccchhHHHHHHHHhccchhhHH
Confidence 33 44445556776531 0000000 00000000 0000011345566777665554
Q ss_pred HHHHHHHhhhHHh-hhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhc
Q psy3965 367 CVQYVVWFSVYLV-YYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM 445 (535)
Q Consensus 367 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~ 445 (535)
+.....+...... .+...+....++.+......+. .+..+..+++.++.+++.||+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~l~~r~ 288 (366)
T TIGR00886 232 LLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYA-----------------------SLGGLLGSLARPLGGAISDRL 288 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH-----------------------HHHHHHHHHHhhccchHHHhh
Confidence 4443333222111 1111121122222211111000 112256778888999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHH
Q psy3965 446 GRRRPLCLTTMAAGVACLVTLAFPQ---GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVAL 521 (535)
Q Consensus 446 grr~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~ 521 (535)
|||+.+..+......+..++.+... ..+......++..+..+...+..+....+..| +.++++.|+.+..+++|+
T Consensus 289 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 289 GGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 9988777766655555544443322 33333344444555566666777788888888 589999999999888763
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=206.49 Aligned_cols=314 Identities=12% Similarity=0.018 Sum_probs=210.7
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.+.+.+|+++ ++..+++.++..++++++|+ ++||+|||+++..+.++..++.++.+++++++.+++.|++
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 103 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGP-----LSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFV 103 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhh-----HHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3456667776 88899999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIPES 300 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpes 300 (535)
+|++.+...+....++.|+++++++++..+.......+|..++|.++..+ .+||+.+++.++..++..+..++++|+
T Consensus 104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 104 QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99998888888888999999999998888888888888888888887765 389999998887777665555556654
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhh
Q psy3965 301 PRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY 380 (535)
Q Consensus 301 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (535)
++. ++ ++ +++.+++++++++..+...+.............
T Consensus 184 ~~~----~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (401)
T PRK11043 184 KKA----RK-QS-----------------------------------QDALTFKQLLKSKTYLGNVLIFAACSAAFFAWL 223 (401)
T ss_pred CCc----cc-cc-----------------------------------hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Confidence 320 00 00 001134455666665543332221111111001
Q ss_pred hhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHH
Q psy3965 381 YGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGV 460 (535)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i 460 (535)
.......+..+.+........ ....++.+++.++.+++.||+++|+.........++
T Consensus 224 ~~~p~~~~~~g~s~~~~g~~~-----------------------~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~ 280 (401)
T PRK11043 224 TGSPFILEQMGYSPADIGLSY-----------------------VPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAV 280 (401)
T ss_pred HHhHHHHHHcCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 111111122222111000000 011145667788888999999988866555444433
Q ss_pred HHHHH---Hhc-CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 461 ACLVT---LAF-PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 461 ~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.+.+ ... ....+.......+.+++.+..++.......+..|+ .|+++.|+.+.....++..++.+.+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 281 SVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33222 221 22333333334455666677777777777777775 689999999999888888888777654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=204.51 Aligned_cols=309 Identities=14% Similarity=0.005 Sum_probs=205.6
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.+|+++ +++.+.+.++..+++++.|+ ++||+|||+++..+.++.+++.++.+++++++.+++.|++
T Consensus 29 lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~-----l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 103 (381)
T PRK03633 29 VPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGY-----VIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFV 103 (381)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4555566665 88999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHhh-hcccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHS--WRILQWVITAPTIIFLILWW-CIPES 300 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~~--Wr~~~~~~~~~~l~~~~~~~-~lpes 300 (535)
+|++.+...+.....+.+..++++|+++.+....+..+|..+++.++..+.. ++...+..+..........+ ..+|+
T Consensus 104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (381)
T PRK03633 104 AGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAILPLLFTRILNQ 183 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcccCC
Confidence 9999999989888888899999999999999999999999999999887642 22223322222211111111 11111
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhh
Q psy3965 301 PRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY 380 (535)
Q Consensus 301 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (535)
+. + +++..+.+++++++..+................+
T Consensus 184 ~~---------------------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (381)
T PRK03633 184 QA---------------------------------------E----NHDSTSIWPMLKLRQARLGVNGCIISGIVLGSLY 220 (381)
T ss_pred CC---------------------------------------C----CCCCCCHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 00 0 0011223455666665543222222222222222
Q ss_pred hhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHH
Q psy3965 381 YGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGV 460 (535)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i 460 (535)
..++.+.++.+.+......+. ....++.+++.+..+++.||+++|+.+..+..+.++
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~-----------------------~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~ 277 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWM-----------------------ALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVIL 277 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHH-----------------------HHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHH
Confidence 222222222222211110100 112266778899999999999999988887777666
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 461 ACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
+.+.+. . .. .......+.+++.....|.....+.|..|++.++.+.+..+....+|++++|.+.++..
T Consensus 278 ~~~~~~--~-~~-~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~ 345 (381)
T PRK03633 278 GSIAML--S-QA-AMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM 345 (381)
T ss_pred HHHHHh--h-hH-HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 1 11 12222233334444456778888889999888888888888888899999999888653
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=206.27 Aligned_cols=316 Identities=8% Similarity=-0.082 Sum_probs=219.6
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhc---cchHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAA---SPWFEGYLVL 220 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~---~~s~~~l~~~ 220 (535)
.|.+++++++ +++.+.+++++.+++++.|+ +.||+|||++++.+.++.+++.++... .++++.+++.
T Consensus 26 ~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~-----l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~ 100 (410)
T TIGR00885 26 VPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAI-----FMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVG 100 (410)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 5677788887 88889999999999999999 999999999999999999999888543 4689999999
Q ss_pred HHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---------------------------
Q psy3965 221 RAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI--------------------------- 273 (535)
Q Consensus 221 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~--------------------------- 273 (535)
|++.|+|.+...+....++.+..|+++|++..++.+...++|..+++.++..+
T Consensus 101 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (410)
T TIGR00885 101 LFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHS 180 (410)
T ss_pred HHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887644
Q ss_pred --cchhHHHHHHHHHHHHHHHHhhh--cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCC
Q psy3965 274 --HSWRILQWVITAPTIIFLILWWC--IPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGK 349 (535)
Q Consensus 274 --~~Wr~~~~~~~~~~l~~~~~~~~--lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (535)
.+||+.|++.+++.++..+...+ .||.++ ++ + ++.+.
T Consensus 181 ~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~~------------------------------~-~~~~~ 221 (410)
T TIGR00885 181 DLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------SD------------------------------A-KQISF 221 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------cc------------------------------c-ccccc
Confidence 14999999888766654444333 333110 00 0 00001
Q ss_pred cccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCce
Q psy3965 350 KVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGI 429 (535)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (535)
+.+.++++|+|.++...+..++...........+..+..+........ ..+ . ... ....
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~--~a~---------~-~~~---------~~~~ 280 (410)
T TIGR00885 222 SASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAG--FAA---------N-YNI---------GAMV 280 (410)
T ss_pred hhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHH--HHH---------H-HHH---------HHHH
Confidence 113345677777666544444322222111111111111111000000 000 0 000 0014
Q ss_pred eehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhH
Q psy3965 430 VEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLG 509 (535)
Q Consensus 430 ~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 509 (535)
...+|+++++++.||+++|+.+.+...+..+.+++....++.. . .....+.+++.+..+|..+....+..+++.+..+
T Consensus 281 ~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~-~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s 358 (410)
T TIGR00885 281 IFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHV-G-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGA 358 (410)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-H-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 4678999999999999999998888888887777776654432 3 3444555577778889999999999998776555
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 510 VGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 510 ~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
.++.... +|+.+.|.+.+...|
T Consensus 359 ~~l~~~~--~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 359 AGLVMAI--IGGGIVPPLQGFIID 380 (410)
T ss_pred HHHHHHH--hccchHHHHHHHHHH
Confidence 5555543 999999999887665
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-25 Score=213.21 Aligned_cols=325 Identities=15% Similarity=0.090 Sum_probs=211.9
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.+.+++.||+ |++++.+.+.+++++|+.|+ ++|||.||+++.+|..++.++.++++++..||+++++|.+
T Consensus 56 ~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gy-----LadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~ 130 (493)
T KOG1330|consen 56 LKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGY-----LADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGF 130 (493)
T ss_pred hHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHH-----HHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555 99999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc----chhHHHHHHHHHHHHHHH-Hhhhcc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH----SWRILQWVITAPTIIFLI-LWWCIP 298 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----~Wr~~~~~~~~~~l~~~~-~~~~lp 298 (535)
.|+|.+...++++.+++|.+|..+|++..++++.+..+|..+|.+++..+. .|||.|+..++++++..+ ..++++
T Consensus 131 vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 131 VGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred hccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999888887776663 599999999998888555 466677
Q ss_pred cchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHH-------
Q psy3965 299 ESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYV------- 371 (535)
Q Consensus 299 esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------- 371 (535)
|.+| +..+|.. +.+. ..+.......+.+.+.+++......+....
T Consensus 211 eP~r-----ga~~~~~-------~~~~----------------~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs 262 (493)
T KOG1330|consen 211 EPER-----GARDEVD-------GENK----------------MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGS 262 (493)
T ss_pred Cccc-----ccccccc-------cCCc----------------CCCCccchHHHHHHHHccCceeeehHHHHHHHHhccc
Confidence 7643 1111100 0000 000000111222333343433322222221
Q ss_pred -HHhhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCCh--
Q psy3965 372 -VWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRR-- 448 (535)
Q Consensus 372 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr-- 448 (535)
.|......+|...+. + .+...+.++.+ +...++.+|.+++|.++||+.|+
T Consensus 263 ~sww~p~~~~~~~~~~--~--~~~~~~~ifg~-----------------------vt~~~G~lGvl~Ggiisd~~~~~~~ 315 (493)
T KOG1330|consen 263 LSWWAPAFIYYSYELI--G--FDHNATLIFGG-----------------------VTCAGGSLGVLFGGIISDKLSRIFP 315 (493)
T ss_pred cchhhhhHHHHHHHHh--C--Cccccchhhhh-----------------------HHHhhchhhheehHHHHHHHHHhcc
Confidence 122222222222111 1 11111112111 22267778888888888884321
Q ss_pred --hHHHHHH-------HHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHh
Q psy3965 449 --RPLCLTT-------MAAGVACLVTLAFPQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAG 518 (535)
Q Consensus 449 --~~l~~~~-------~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 518 (535)
....... .+....+++...... ..+..+++.+++.......++...-+..|..|++.|.++.++...+..
T Consensus 316 ~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h 395 (493)
T KOG1330|consen 316 NSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEH 395 (493)
T ss_pred cccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHH
Confidence 1111111 111111122222222 234445555555555555566666788899999999999999987777
Q ss_pred -HHHHHHHHHHhhhhh
Q psy3965 519 -VALILIPYLWDMVNS 533 (535)
Q Consensus 519 -ig~~i~P~i~~l~~~ 533 (535)
+|.+-+|+++++.++
T Consensus 396 ~fgd~~~p~ivGilsd 411 (493)
T KOG1330|consen 396 IFGDAASPYIVGILSD 411 (493)
T ss_pred HhccCCCcceehhHHH
Confidence 466777878877654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=205.85 Aligned_cols=315 Identities=9% Similarity=-0.059 Sum_probs=217.9
Q ss_pred ceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHh
Q psy3965 151 TIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLG 225 (535)
Q Consensus 151 ~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G 225 (535)
.+++++|+ ++..+.+.++..+++++.|+ ++||+|||++++++.++..++.++.+++++++.++++|++.|
T Consensus 33 ~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~-----l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 107 (395)
T PRK10054 33 YLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGI-----LADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALIN 107 (395)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455665 78888999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHH-Hhhhcccchh
Q psy3965 226 FVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH--SWRILQWVITAPTIIFLI-LWWCIPESPR 302 (535)
Q Consensus 226 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--~Wr~~~~~~~~~~l~~~~-~~~~lpesp~ 302 (535)
.+.+...+....+..|..|+++|+++.++......+|.+++|.++..+. +||..|++.++..++..+ ..+++||+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 187 (395)
T PRK10054 108 CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEK 187 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888889999999999999999999999999999999999887763 899999988776666443 3444555421
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhh
Q psy3965 303 WLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYG 382 (535)
Q Consensus 303 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (535)
- ++ ++. + +..+.++++|+|.++...+...+..+........
T Consensus 188 ~----~~-~~~-----------------------------~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 228 (395)
T PRK10054 188 A----IA-TET-----------------------------G-----SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASC 228 (395)
T ss_pred c----cc-cch-----------------------------h-----hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhh
Confidence 0 00 000 0 0011245667777665554444333222111111
Q ss_pred hhhcc---CccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHH
Q psy3965 383 LVLNL---SNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAG 459 (535)
Q Consensus 383 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~ 459 (535)
...+. .+.+.+......+. ...++...+.....+.+.||.++|+.+..+..+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~g~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 285 (395)
T PRK10054 229 ISQYVMVVADSDFAEKVVAVVL-----------------------PVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFV 285 (395)
T ss_pred HHHHHHHhcccchHHHHHHHHH-----------------------HhhhhheeeehhHHHHHHccCCchhHHHHHHHHHH
Confidence 11111 11111000000000 01114445556788899999999999888887777
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 460 VACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 460 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
++.+.+.+..++.+...+...+.+++.+...+....++.+..|++.|+++.+..+ ...+|..++|.+.+...+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 286 IGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT 358 (395)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 7766665443344444445556666666666777788999999999999988765 567899999998876544
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=205.59 Aligned_cols=321 Identities=18% Similarity=0.154 Sum_probs=226.6
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+.+.+++++++++|.+++|. |.||++-.+.+....+++++.+++....+|++.+++.|++.|+..+..+|....+
T Consensus 84 ~~~~t~F~v~Yii~~~p~~~-----L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~ 158 (495)
T KOG2533|consen 84 GVLDTVFYVGYIIGQFPSGL-----LGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAI 158 (495)
T ss_pred hhHHHHHHHHHHHHHhhHHH-----HHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHH
Confidence 88999999999999999999 9999999999999999999999888889999999999999999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---------cchhHHHHHHHHHHHH-HHHHhhhcccchh--HHHh
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---------HSWRILQWVITAPTII-FLILWWCIPESPR--WLLT 306 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---------~~Wr~~~~~~~~~~l~-~~~~~~~lpesp~--~l~~ 306 (535)
+..|+.+++|++.++++.+..++|.++++++++.+ .||||.|++.+++.++ .++.++++|+.|. |..+
T Consensus 159 lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~ 238 (495)
T KOG2533|consen 159 LGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLT 238 (495)
T ss_pred HHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccc
Confidence 99999999999999999999999999999998883 4899999999988877 4456788999986 3322
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhc
Q psy3965 307 MGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLN 386 (535)
Q Consensus 307 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (535)
+.+.+-+ .++..+ .......++.+...+++.+++|..+...+..++.+.......+.++++
T Consensus 239 ~~ek~~~---~~~~~~----------------~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~ 299 (495)
T KOG2533|consen 239 DEEKELV---VERLRE----------------SPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLY 299 (495)
T ss_pred hHHHHHH---HHHHHh----------------ccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHH
Confidence 2111111 111111 111111111455678899999999988888877777666444444444
Q ss_pred cCc-cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhh----cCChhHHHHHHHHHHHH
Q psy3965 387 LSN-IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLK----MGRRRPLCLTTMAAGVA 461 (535)
Q Consensus 387 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr----~grr~~l~~~~~~~~i~ 461 (535)
..+ .+.+..... ..++...++++++.+++++++|| ..+|......+.+..+.
T Consensus 300 l~~~~~~s~~~a~-----------------------~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~ 356 (495)
T KOG2533|consen 300 LKSNGGYSELQAN-----------------------LLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAII 356 (495)
T ss_pred HHcCCCcChHHhc-----------------------cccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 433 111111111 12223348899999999999999 55666555555544444
Q ss_pred H-HHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhH-HHHHHHHHhHHHHHHHHH
Q psy3965 462 C-LVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLG-VGASSVPAGVALILIPYL 527 (535)
Q Consensus 462 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~-~g~~~~~~~ig~~i~P~i 527 (535)
. +.+... +.........+.+.++.....+.....+++....+.|... .+........+++++|.+
T Consensus 357 g~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~ 423 (495)
T KOG2533|consen 357 GAISLLAA-AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL 423 (495)
T ss_pred HHHHHHhh-ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh
Confidence 3 333333 3333444444555555666666777777776665555444 444445555666666554
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=203.36 Aligned_cols=317 Identities=11% Similarity=0.095 Sum_probs=209.7
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.+++|+ ++..+++.++..++.++.|. ++||+|||+++..+.++.+++.+++.++++++.+.+.|++
T Consensus 14 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~-----l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 88 (377)
T PRK11102 14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGP-----MADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL 88 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhch-----HHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 4566677776 77789999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHH-HHhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFL-ILWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~-~~~~~lpe 299 (535)
.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.++..+ .+||+.+++.++..++.. +..+++||
T Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (377)
T PRK11102 89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPE 168 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999887765 389999998877766644 44566777
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHH-
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYL- 378 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 378 (535)
+++- +++ ++ .+.. +...+++++++++..+...+...+.+.....
T Consensus 169 ~~~~---~~~----------------~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (377)
T PRK11102 169 TLPK---ERR----------------QP--FHLR--------------TTIRNFASLFRHKRVLGYMLASGFSFAGMFSF 213 (377)
T ss_pred cCcc---ccc----------------CC--CChH--------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 5420 000 00 0000 0011234566776655444433322221111
Q ss_pred hhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 379 VYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
..+...+..+..+.+........ .+.+++.+++.++.+++.||+|||+.+..+..+.
T Consensus 214 ~~~~~~~~~~~~g~s~~~~g~~~-----------------------~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 270 (377)
T PRK11102 214 LTAGPFVYIELNGVSPQNFGYYF-----------------------ALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQ 270 (377)
T ss_pred HHcCHHHHHHHhCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 11111112222221111100000 1122667788999999999999999888777654
Q ss_pred HHHHHHHH---hcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHh-HHHHHHHHHHh
Q psy3965 459 GVACLVTL---AFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAG-VALILIPYLWD 529 (535)
Q Consensus 459 ~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-ig~~i~P~i~~ 529 (535)
.+..+.+. ..+...+.......+...+.+...+....+..|..| +.++.+.++.+.... +|..+++++..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 271 FIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43332222 222223333322323333333333444556677777 678999998876643 67777777654
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=202.84 Aligned_cols=305 Identities=13% Similarity=0.023 Sum_probs=204.6
Q ss_pred cCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc-----chHHHHHHHHHHH
Q psy3965 155 EPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS-----PWFEGYLVLRAML 224 (535)
Q Consensus 155 ~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~-----~s~~~l~~~r~l~ 224 (535)
|+++ +++.+++.+++.++.++.|. +.||+|.|+++.++.++.++..++.+++ ++++.+++.|++.
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~-----l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~ 138 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSF-----MVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLC 138 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHH
Confidence 5666 78889999999999999999 9999999999999999999999999987 8999999999999
Q ss_pred hhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhh-----h----------------cchhHHHHHH
Q psy3965 225 GFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYY-----I----------------HSWRILQWVI 283 (535)
Q Consensus 225 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~-----~----------------~~Wr~~~~~~ 283 (535)
|++ +..++.....+++++|+++||++.++......+|..+++.+... + .+||...++.
T Consensus 139 Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~ 217 (462)
T PRK15034 139 GFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIW 217 (462)
T ss_pred HHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHH
Confidence 998 77889999999999999999999999965555555544333221 1 1377777777
Q ss_pred HHHHHHHHHHhhh-cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchH
Q psy3965 284 TAPTIIFLILWWC-IPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLM 362 (535)
Q Consensus 284 ~~~~l~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (535)
.++.++..++.++ .++.|. .+......++.+|+|+.
T Consensus 218 ~~~~iv~~i~~~~~~~~~~~-------------------------------------------~~~~~~~~~~vlk~~~~ 254 (462)
T PRK15034 218 VPLLAIATIAAWSGMNDIAS-------------------------------------------SRASIADQLPVLQRLHL 254 (462)
T ss_pred HHHHHHHHHHHHHhCCCccc-------------------------------------------cccCHHHHHHHhCCCch
Confidence 7766665544443 333221 00011234567888887
Q ss_pred HHHHHHHHHHHhhhH-HhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHH
Q psy3965 363 RLISCVQYVVWFSVY-LVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILI 441 (535)
Q Consensus 363 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 441 (535)
|...+..+..+.... +.++...+....+... ..... ..+..+...+.++++|++
T Consensus 255 Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~----~~l~~---------------------~~l~~l~~~l~rplgG~L 309 (462)
T PRK15034 255 WLLSLLYLATFGSFIGFSAGFAMLAKTQFPDV----NILRL---------------------AFFGPFIGAIARSVGGAI 309 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH----HHHHH---------------------HHHHHHHHHHHHHhhHHH
Confidence 766666554443322 2222222211111100 00000 000115567788899999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHH-HhcCC----ChHHHHHHHHHHHHHHHHHhhhhhhhcccccch-------------
Q psy3965 442 LLKMGRRRPLCLTTMAAGVACLVT-LAFPQ----GSWMTISLAMIGKFAISSSNVVMPVYTAELFPT------------- 503 (535)
Q Consensus 442 ~dr~grr~~l~~~~~~~~i~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~------------- 503 (535)
+||+|+|+++.++.+++.+..... ...+. +.+...+..+...++.+......+-++.+.+|+
T Consensus 310 ADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~ 389 (462)
T PRK15034 310 SDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSD 389 (462)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccch
Confidence 999999999988887666665332 23332 123333333334455555666677777777774
Q ss_pred --------hhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 504 --------KMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 504 --------~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
+..|.+.|+....+.+|+++.|.+.+...+
T Consensus 390 ~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~ 427 (462)
T PRK15034 390 EQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLN 427 (462)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHH
Confidence 146788899999999999999987765543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=200.51 Aligned_cols=284 Identities=18% Similarity=0.171 Sum_probs=218.8
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.+.++..+++++.|+ ++||+|||+.+..+.++..++.++..++++++.+.+.|++.|++.+...+...++
T Consensus 37 ~~~~~~~~~~~~~~~~~~g~-----~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 111 (352)
T cd06174 37 GLIVSAFSLGYALGSLLAGY-----LSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAAL 111 (352)
T ss_pred HHHHHHHHHHHHHHHHhHHH-----HHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHH
Confidence 78889999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAME 315 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~a~~ 315 (535)
+.|+.|+|+|++..++.+....+|..+++.++..+. +||+.+++.++..++..+...+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 174 (352)
T cd06174 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL----------------- 174 (352)
T ss_pred HHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 999999999999999999999999999999888763 699999988877766555444332
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhh-hhhhhccCccCCce
Q psy3965 316 VLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY-YGLVLNLSNIGGDV 394 (535)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 394 (535)
|.++...+............. +...+..+..+.+.
T Consensus 175 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (352)
T cd06174 175 --------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA 210 (352)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCH
Confidence 112222222222222211111 11111111111111
Q ss_pred eeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChh-HHHHHHHHHHHHHHHHHhcCCChH
Q psy3965 395 YVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRR-PLCLTTMAAGVACLVTLAFPQGSW 473 (535)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~-~l~~~~~~~~i~~~~~~~~~~~~~ 473 (535)
...... ....+++.+++.++.+++.||++||+ .+..+..+..++.+.....++ .+
T Consensus 211 ~~~~~~-----------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~ 266 (352)
T cd06174 211 AEAGLL-----------------------LSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS-LA 266 (352)
T ss_pred HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-HH
Confidence 111000 01122778889999999999999999 888888888888877766544 44
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 474 MTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
......++.+++.+...+....+..|..|++.|++..|+.+....+|..++|.+.+...
T Consensus 267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~ 325 (352)
T cd06174 267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL 325 (352)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566677778888888899999999999999999999999999999999999987643
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=202.90 Aligned_cols=148 Identities=15% Similarity=0.092 Sum_probs=131.1
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.++++. ++..+++++++++++++.|+ ++||+|||++++.+.++.+++.++++++++++.++++|++
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~-----l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l 113 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGP-----LSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFI 113 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567777777 77889999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
+|++.+...+....++.|++|+++|++..++...+..+|..++|.++..+ .+||+.|++.++..++..+. ++.+||
T Consensus 114 ~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 114 QGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99998877778888899999999999999999999999999999988766 38999999988877765543 556788
Q ss_pred ch
Q psy3965 300 SP 301 (535)
Q Consensus 300 sp 301 (535)
++
T Consensus 194 ~~ 195 (413)
T PRK15403 194 TV 195 (413)
T ss_pred Cc
Confidence 74
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=202.96 Aligned_cols=315 Identities=10% Similarity=-0.014 Sum_probs=207.6
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.+++++ +++.+.+.++..+++++.|+ ++||+|||+++..+.++..++.++..++++++.+++.|++
T Consensus 31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~-----l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 105 (394)
T PRK11652 31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGP-----LSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAI 105 (394)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhh-----HHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 4566677776 78889999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHH-HHHhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIF-LILWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~-~~~~~~lpe 299 (535)
.|++.+...+....+..|.+++++|+++.++.+.+..+|..++|.++..+ .+||+.|++.++..++. .+..+++||
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (394)
T PRK11652 106 QGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPE 185 (394)
T ss_pred HHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999888888888999999999999999999999999999999888765 38999999887766553 344566788
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV 379 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 379 (535)
+++. +.+.++ .+..+++.++++.++...+............
T Consensus 186 ~~~~---~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
T PRK11652 186 TRPA---DARRTR------------------------------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVF 226 (394)
T ss_pred cCcc---ccchhH------------------------------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 6431 000000 0112344566666655444333222211111
Q ss_pred hhhhhhcc-CccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 380 YYGLVLNL-SNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
........ +.++.+......+.. ...++.+++.++.+++.||.+++..........
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~-----------------------~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 283 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFI-----------------------LPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLL 283 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 112221111000000 111444555566666666666332222122222
Q ss_pred HHHHHHHH-hc-CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 459 GVACLVTL-AF-PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 459 ~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+....... .. ....+......++.+++.+...+....+..|.+|+ .++++.++.+....+|+.++|.+.+..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 284 AGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-LAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 21121111 11 12334445555666677777788888888898884 689999999999999999999887654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=202.18 Aligned_cols=306 Identities=9% Similarity=-0.017 Sum_probs=205.3
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
|++.+.+.++..+.+++.|+ ++||+|||+++..+.++..++.++..++++++.+.+.|+++|++.+...+...++
T Consensus 49 gl~~~~~~l~~~~~~~~~G~-----l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~ 123 (400)
T PRK11646 49 GIALGLRQFIQQGLGIFGGA-----IADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTAL 123 (400)
T ss_pred HHHHHHHHHHHHHHHhhhhH-----HHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888999999 9999999999999999999999999999999999999999999998888999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh--cchhHHHHHHHHHHHHHH-HHhhhcccchhHHHhcCCHHHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI--HSWRILQWVITAPTIIFL-ILWWCIPESPRWLLTMGKTEEAME 315 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~--~~Wr~~~~~~~~~~l~~~-~~~~~lpesp~~l~~~~~~~~a~~ 315 (535)
+.|++|+++|+++.++......+|..++|.++..+ .+||+.|++.++..++.. +..+++||.+. .+.+
T Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~~~---- 194 (400)
T PRK11646 124 VIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----STVR---- 194 (400)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----cccc----
Confidence 99999999999999999999999999999888766 389999998877665543 33445555210 0000
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCccCCcee
Q psy3965 316 VLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVY 395 (535)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (535)
++.+.+++++++++.++...+.....+..........+.+.++.+.+..
T Consensus 195 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 243 (400)
T PRK11646 195 -------------------------------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPS 243 (400)
T ss_pred -------------------------------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCch
Confidence 0001124456666665543333222221111111112222222111110
Q ss_pred eeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHH-hhcCChhHHHHHHHHHHHHHHHHHhcCCChHH
Q psy3965 396 VNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILIL-LKMGRRRPLCLTTMAAGVACLVTLAFPQGSWM 474 (535)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 474 (535)
....+.. +.++....+....+.+. ||++.++.+..+..+.+++.+++...++ .+.
T Consensus 244 ~~g~l~~-----------------------~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 299 (400)
T PRK11646 244 AVKWMYA-----------------------IEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN-LQQ 299 (400)
T ss_pred HHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh-HHH
Confidence 0000000 01122333333334444 4566566666666666666655554433 333
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 475 TISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
.....++.+.+.+...+...++..+..|++.|+++.|+.+....+|..++|.+.+...+
T Consensus 300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 300 LFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 33344445556666667778899999999999999999999999999999988877544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-22 Score=201.58 Aligned_cols=318 Identities=13% Similarity=0.044 Sum_probs=197.2
Q ss_pred CceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchh---hc-cchHHHHHHH
Q psy3965 150 DTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV---AA-SPWFEGYLVL 220 (535)
Q Consensus 150 ~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~-~~s~~~l~~~ 220 (535)
+.+.+|+++ ++..+.+.++..+++++.|+ ++||+|||+++..+.++.+++.+++ ++ .++++.+++.
T Consensus 37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~-----l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (402)
T TIGR00897 37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGV-----VAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF 111 (402)
T ss_pred HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence 334455555 78889999999999999999 9999999999999999998887654 23 3688899999
Q ss_pred HHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHH-HHHHHHHhhh---cchhHHHHHHHHHHHH-HHHHhh
Q psy3965 221 RAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGY-IAISGIAYYI---HSWRILQWVITAPTII-FLILWW 295 (535)
Q Consensus 221 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~-~i~~~l~~~~---~~Wr~~~~~~~~~~l~-~~~~~~ 295 (535)
|++.|++.+...+....++.++.|+++|+++.++.+.+.++|. ++++.++..+ .+|+..++......++ ..+..+
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF 191 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888888889999999999999999999999997 5788776554 2655544433322222 222233
Q ss_pred hcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhh
Q psy3965 296 CIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFS 375 (535)
Q Consensus 296 ~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 375 (535)
+.++.++ +++.++ +.+. .+....+++++++|.++...+..++....
T Consensus 192 ~~~~~~~----~~~~~~----------------~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (402)
T TIGR00897 192 SNKDIFT----PQHMQT----------------REKF--------------SELGKAATILFTNPNVLLGGMVRIINTIG 237 (402)
T ss_pred ccCCCCC----cccccC----------------Ccch--------------hhHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 3343211 000000 0000 00011234567777766554443322222
Q ss_pred h-HHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHH-H
Q psy3965 376 V-YLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLC-L 453 (535)
Q Consensus 376 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~-~ 453 (535)
. ....+. +.+..+.+.+......+. ...+++.+++.+..|++.||++||+.+. .
T Consensus 238 ~~~~~~~~-p~~~~~~g~s~~~~~~~~-----------------------~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~ 293 (402)
T TIGR00897 238 LFGFAVFL-PMFVAELGFSTSEWLQIW-----------------------GTFFFTNIVFNVIFGIVGDKLGWMNTVRWF 293 (402)
T ss_pred HHHHHHHH-HHHHHHcCCChhHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 1 111222 222233332221111100 1122677889999999999999888664 3
Q ss_pred HHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHh
Q psy3965 454 TTMAAGVACLVTLAF----PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWD 529 (535)
Q Consensus 454 ~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~ 529 (535)
+.+..++..+.+... .+..+......++.+++.+...+ ......|..| +.|+++.|+.+....+|++++|.+.+
T Consensus 294 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g 371 (402)
T TIGR00897 294 GGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAV 371 (402)
T ss_pred HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333232221 12333344444445555554433 3345567655 57999999999999999999999886
Q ss_pred hhh
Q psy3965 530 MVN 532 (535)
Q Consensus 530 l~~ 532 (535)
..-
T Consensus 372 ~l~ 374 (402)
T TIGR00897 372 LFI 374 (402)
T ss_pred HHH
Confidence 543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-22 Score=203.77 Aligned_cols=310 Identities=15% Similarity=0.064 Sum_probs=209.5
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+++.+++.++..+++++.|+ ++||+|||++++.+.++..++.++.+++++++.+++.|++.|++.+ ..+....+
T Consensus 57 g~~~~~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~ 130 (408)
T PRK09874 57 GLVFSITFLFSAIASPFWGG-----LADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANAL 130 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHH
Confidence 67788999999999999999 9999999999999999999999999999999999999999999854 56777788
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHH-HhhhcccchhHHHhcCCHHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLI-LWWCIPESPRWLLTMGKTEEAM 314 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~-~~~~lpesp~~l~~~~~~~~a~ 314 (535)
+.|..|+++|+++.++...+..+|.++++.++..+ .+||+.+++.++..++..+ ..+++||.++.. .+ ++ +
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-~ 205 (408)
T PRK09874 131 IATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SK-KE-M 205 (408)
T ss_pred HHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cc-hh-h
Confidence 89999999999999999999999999999888775 3899999988876665443 345566653210 00 00 0
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHH-HHhhhHHhhhhhhhccCccCCc
Q psy3965 315 EVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYV-VWFSVYLVYYGLVLNLSNIGGD 393 (535)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 393 (535)
. + ..+..+.++++......+...+ ..............+..+...+
T Consensus 206 ~---------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (408)
T PRK09874 206 L---------------H------------------MREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGN 252 (408)
T ss_pred h---------------H------------------HHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 0 0001122344443322222111 1111111100011111111111
Q ss_pred eeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChH
Q psy3965 394 VYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSW 473 (535)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~ 473 (535)
........+ ....+.+++.+++.+..+++.||++||+.+..+..+.++..+.....+ ..+
T Consensus 253 ~~~~~~~~g-------------------~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~ 312 (408)
T PRK09874 253 VSNIAFISG-------------------MIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-TPL 312 (408)
T ss_pred chHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-cHH
Confidence 000000000 000011255567777889999999999998888877766665554443 344
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 474 MTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
...+..++.+++.+...+.......+..|++.|++.+|+.+.+..+|..++|.+.+...
T Consensus 313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~ 371 (408)
T PRK09874 313 QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS 371 (408)
T ss_pred HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH
Confidence 45555556667777777777788888899999999999999999999999999987653
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-22 Score=200.08 Aligned_cols=312 Identities=13% Similarity=0.046 Sum_probs=203.8
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.|.+.++++. ++..+.+.++..+++++.|+ ++||+|||++++.+.++..++.++..++++++.+++.|++
T Consensus 26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~-----l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 100 (392)
T PRK10473 26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGK-----IADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFL 100 (392)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhH-----HHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 5667777776 67788999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHH-HHhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFL-ILWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~-~~~~~lpe 299 (535)
+|++.+...+....++.|++|+++|++..++.+....+|.+++|.++..+ .+||+.+++.++..++.. +..+.+||
T Consensus 101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999888765 389999998877666543 34566777
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhH-H
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVY-L 378 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~ 378 (535)
++.. +.+ +. . ......++.++++..+...+...+.+.... .
T Consensus 181 ~~~~---~~~--~~----------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (392)
T PRK10473 181 TRPA---RAP--AA----------------S-----------------SKPRENSESLLNRFFLSRLVITTLSVTVILTF 222 (392)
T ss_pred CCCc---ccC--Cc----------------c-----------------chHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 6421 000 00 0 000112234556655444333322222111 1
Q ss_pred hhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 379 VYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
..+...+....++.+......+ ....+++.+++.++.+++.||+|||+.+..+..+.
T Consensus 223 ~~~~~~~~~~~~g~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~ 279 (392)
T PRK10473 223 VNTSPVLLMEQMGFSRGEYAII-----------------------MALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF 279 (392)
T ss_pred HHhCHHHHHHHcCCCHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1111111112222221110000 00122667788999999999999999998888777
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhh-hhHHHHHHHHHhHHHHHHHHHHh
Q psy3965 459 GVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMR-NLGVGASSVPAGVALILIPYLWD 529 (535)
Q Consensus 459 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r-~~~~g~~~~~~~ig~~i~P~i~~ 529 (535)
.++.+.+...+... .......+...+.+..++.. ...+..|.+.| +.+.++..+...+|..+++.+.+
T Consensus 280 ~~~~~~~~~~~~~~-~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 280 LAAGITLALSPSHA-VSLFGITLICAGFSVGFGVA--MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHH--HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666665543322 22222223333333333332 33344454333 55555555555666766666654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=201.21 Aligned_cols=328 Identities=11% Similarity=0.013 Sum_probs=200.2
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc----chHHHHHHHHHHHhhhhhhhHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS----PWFEGYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~----~s~~~l~~~r~l~G~~~~~~~~~ 234 (535)
++..+++.++..+++++.|+ ++||+|||+++..+.++.+++.++.++. ++++.+.+.|++.|++.+...+.
T Consensus 64 g~~~~~~~~~~~~~~~~~G~-----l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~ 138 (438)
T TIGR00712 64 GFALSAISIAYGFSKFIMGS-----VSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPP 138 (438)
T ss_pred HHHHHHHHHHHHHhhhccch-----hhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHH
Confidence 88899999999999999999 9999999999999999999988877664 56788889999999999999898
Q ss_pred HHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhh-h---cchhHHHHHHHHHHHH-HHHHhhhcccchhHHHhcCC
Q psy3965 235 GFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYY-I---HSWRILQWVITAPTII-FLILWWCIPESPRWLLTMGK 309 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~-~---~~Wr~~~~~~~~~~l~-~~~~~~~lpesp~~l~~~~~ 309 (535)
...++.|++|+++|+++.++.+.+..+|..+++.+... + .+||+.|++.++..++ .++.++++||+|+....+ +
T Consensus 139 ~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~ 217 (438)
T TIGR00712 139 CGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-P 217 (438)
T ss_pred HHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-C
Confidence 89999999999999999999999999998888766443 2 3899999998887766 445566778887532100 0
Q ss_pred HHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCccc-chhhccCchHHHHHHHHHHHHhhh-HHhhhhhhhcc
Q psy3965 310 TEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVE-VLDLWRTPLMRLISCVQYVVWFSV-YLVYYGLVLNL 387 (535)
Q Consensus 310 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 387 (535)
.++. .++. +.+. . ++.+++.+.+.. .+.+++++.++...+...+.+... ....+...+..
T Consensus 218 ~~~~---------~~~~--~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 279 (438)
T TIGR00712 218 IEEY---------RNDY--PDDY----N---EKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLK 279 (438)
T ss_pred chhc---------cccc--cccc----c---cccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 0000 0000 0000 0 000000000001 123567777766655444333222 22222222222
Q ss_pred CccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHH---HHHHH
Q psy3965 388 SNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAG---VACLV 464 (535)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~---i~~~~ 464 (535)
...+.+....... ..+.++..+++.++.+++.||+++++....+..... ++.+.
T Consensus 280 ~~~g~s~~~~~~~-----------------------~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 336 (438)
T TIGR00712 280 EVKHFALDKSSWA-----------------------YFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIV 336 (438)
T ss_pred HccCCChhhHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHH
Confidence 2222221111110 012226678899999999999964332222222111 11222
Q ss_pred HHhcCC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHH-HHHHHHHhhhhh
Q psy3965 465 TLAFPQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVAL-ILIPYLWDMVNS 533 (535)
Q Consensus 465 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~-~i~P~i~~l~~~ 533 (535)
+...+. ..+......+..+++.............|.+|++.|+++.|+.+....+|+ +++|.+.+...+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~ 407 (438)
T TIGR00712 337 YWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 407 (438)
T ss_pred HHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH
Confidence 222222 222222222222222211112223467799999999999999998888875 678888776443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=208.23 Aligned_cols=339 Identities=11% Similarity=0.047 Sum_probs=214.4
Q ss_pred CCcCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHH-H
Q psy3965 147 NFGDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLV-L 220 (535)
Q Consensus 147 ~~~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~-~ 220 (535)
.+.+.+.+++++ +++.+.+.++..++.++.|+ ++||+|||++++.+.++.+++.++++++++++.+++ .
T Consensus 40 ~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~-----l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (455)
T TIGR00892 40 VFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSI-----LVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTA 114 (455)
T ss_pred hhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHH-----HHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 336677778877 77888899999999999999 999999999999999999999999999999998865 5
Q ss_pred HHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhc
Q psy3965 221 RAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCI 297 (535)
Q Consensus 221 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~l 297 (535)
|++.|++.+...+....++.++++ ++|+++.++.+.+..+|..+++.++..+ .+||+.|++.+++.++..+..+++
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 799999998877778888889985 7899999999999999999998887655 389999999888766644443333
Q ss_pred -ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhh
Q psy3965 298 -PESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSV 376 (535)
Q Consensus 298 -pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 376 (535)
++.+.. .+.+. +.. .+.+ +....+ +...+...+...+....+++++|.++......++..+..
T Consensus 194 ~~~~~~~--~~~~~-~~~---------~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (455)
T TIGR00892 194 RPVGPSQ--RVSKS-KSK---------EGLP-PDGSTK---KLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGF 257 (455)
T ss_pred CCCCccc--ccccc-ccc---------ccCC-CCCccc---cccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHc
Confidence 322110 00000 000 0000 000000 000000000000111124677777665554433333322
Q ss_pred HHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhc--CChhHHHHH
Q psy3965 377 YLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM--GRRRPLCLT 454 (535)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~~~ 454 (535)
...+..+..+..+.+.+......+. .+.+++.+++.++.+++.||. ++|+...+.
T Consensus 258 ~~~~~~l~~~~~~~g~s~~~~g~~~-----------------------~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 314 (455)
T TIGR00892 258 FAPIIFLVPYAKDKGVDEYEAAFLL-----------------------SIIGFVDIFARPSCGLIAGLKWIRPHVQYLFS 314 (455)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHhcccccCHHHHHHHH
Confidence 2222111222222222211111111 122366677788889999973 333333322
Q ss_pred --HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 455 --TMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 455 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
.++.+++.++.... ++.+..+...++.+++.+...+..+.+..|.+|++.++++.|+.+....+|++++|.+.+..
T Consensus 315 ~~~~~~~l~~ll~~~~-~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l 392 (455)
T TIGR00892 315 FALLFNGLTHLLCALA-GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL 392 (455)
T ss_pred HHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence 23333333333332 33444455556666777777778888899999999999999999999999999999988754
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=176.67 Aligned_cols=321 Identities=14% Similarity=0.099 Sum_probs=196.0
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
|.+.|.|+++..+.++.+|. ++||+|||+++++|++..++..++.+++.||..+.+.|++.|+.- +...+..++
T Consensus 71 GflGSsF~ilQ~~sS~~~G~-----~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k-gnl~v~rAi 144 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGC-----LSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK-GNLSVIRAI 144 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhh-----hhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHH
Confidence 88999999999999999999 999999999999999999999999999999977878899999995 556778899
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhcch-----hHHHHH----HHHHHHH-HHHHhhhcccchhHHHhcC
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSW-----RILQWV----ITAPTII-FLILWWCIPESPRWLLTMG 308 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~~W-----r~~~~~----~~~~~l~-~~~~~~~lpesp~~l~~~~ 308 (535)
++|..++|+|++.++.++..+++|.++||.+|+++.-. +.+|.. ..+.+.. .....+++||+-+ .++
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~rk 221 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LRK 221 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---chh
Confidence 99999999999999999999999999999999887421 112222 2222222 3445678999832 222
Q ss_pred CHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHH---HHHHHhhhHHh-----h
Q psy3965 309 KTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCV---QYVVWFSVYLV-----Y 380 (535)
Q Consensus 309 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~-----~ 380 (535)
+.+|+... ++.++ .. ++..+. ....-..++|++........ ..+..+..... +
T Consensus 222 ~~~~~~~~-~~~~~-----------~~-~~~~~~------~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~ 282 (451)
T KOG2615|consen 222 RNDEHSTL-QEAAD-----------DR-LALLKF------ARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLEN 282 (451)
T ss_pred hcccccch-hhhhh-----------hh-hhhcch------hhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22111100 00000 00 000000 00001122333322221111 11111111111 1
Q ss_pred hhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChh-----HHHHHH
Q psy3965 381 YGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRR-----PLCLTT 455 (535)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~-----~l~~~~ 455 (535)
+...+.-..++.+.....-+.. ..++.+.++.+.+..+..|-+ .+..++
T Consensus 283 t~~~l~~~rfg~ss~~~G~vl~--------------------------~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l 336 (451)
T KOG2615|consen 283 TVLFLTHGRFGYSSMQQGKVLS--------------------------TTGLLMLVIQLALVPILPRYKGNIKAVLLFSL 336 (451)
T ss_pred hHHHhhcCccCCChhhheeeee--------------------------hhhHHHHHHHHhccccccccccchhhHHHHHH
Confidence 1111111222222221111111 344555555555555554433 333444
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhhc
Q psy3965 456 MAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNSF 534 (535)
Q Consensus 456 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~~ 534 (535)
.++.-..+++....... .......+..+......+....+.....|++.||+..|+....+.++-++||.+.+....|
T Consensus 337 ~~~vP~~llls~~~~~~-~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 337 LLIVPAFLLLSLARTPV-VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHHHHhccccch-hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 33333333333333332 3334444555555555677788899999999999999999999999999999998765554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=222.79 Aligned_cols=314 Identities=12% Similarity=0.015 Sum_probs=214.9
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchh---hccchHHHHHHHHHHHhhhhhhhHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV---AASPWFEGYLVLRAMLGFVCVSIVFSG 235 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~~~s~~~l~~~r~l~G~~~~~~~~~~ 235 (535)
+++.+++.++.+++++++|+ ++||+|||++++++.++..++.++. .++++++.++++|+++|++.+...++.
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~-----l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGF-----LADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhh-----hcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 78889999999999999999 9999999999999887766555543 345789999999999999999999999
Q ss_pred HhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc------------chhHHHHHHHH-HHHHHHHHhhhcccchh
Q psy3965 236 FVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH------------SWRILQWVITA-PTIIFLILWWCIPESPR 302 (535)
Q Consensus 236 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~------------~Wr~~~~~~~~-~~l~~~~~~~~lpesp~ 302 (535)
.+++.|++|+++|++++++.+.+..+|.++++.++.++. +|++.+.+..+ ..++.+++.+.+||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999999999999999999999887653 23444433333 33334445566788765
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhh
Q psy3965 303 WLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYG 382 (535)
Q Consensus 303 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (535)
+...+.+ ++. ... .......++.+++++.++...+...+.++........
T Consensus 205 ~~~~~~~-~~~---------------~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1146)
T PRK08633 205 AAPEVFD-KKK---------------YLF--------------PKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQAN 254 (1146)
T ss_pred CCccccc-ccc---------------ccc--------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 3111000 000 000 0000123455677777766655555444433222222
Q ss_pred -hhhccCccCCcee-eeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHH
Q psy3965 383 -LVLNLSNIGGDVY-VNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGV 460 (535)
Q Consensus 383 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i 460 (535)
..+....++.+.. ....+ ....+++.+++.++.+++.||+++++.+.++.++.++
T Consensus 255 ~~~~~~~~~g~s~~~~~g~~-----------------------~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~ 311 (1146)
T PRK08633 255 FPAYAKEVLGLDNTFQVQYL-----------------------LAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLAL 311 (1146)
T ss_pred hHHHHHHHhCCCcHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHH
Confidence 2222222222211 11111 1122266778889999999999988888887777777
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 461 ACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.+++.+.. +.+..++..++.+++.+...+...+++.+..|++.|++++|+.+++..+|.++++.+..+.
T Consensus 312 ~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 312 SLFLLPTAP-SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666665544 3334445556666777777777888999999999999999999999999887777666543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-21 Score=193.19 Aligned_cols=306 Identities=11% Similarity=0.023 Sum_probs=197.5
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCcccccccc-----Cchhh-HHHHHHHHHHhhchhhcc---chH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF-----GRKRA-LMGSLVCQLVLGAGVAAS---PWF 214 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~-----Grr~~-l~~~~~~~~i~~~~~~~~---~s~ 214 (535)
.|.+.+|+++ ++..+. .+...+ .+++|+ ++||+ ||||. ++.+.++.++..++.++. .++
T Consensus 11 ~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~-----~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l 83 (356)
T TIGR00901 11 LPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSP-----LVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL 83 (356)
T ss_pred HHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHH-----HHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence 4566777777 333322 333333 888899 99998 89887 456777777777677776 466
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cc--------hhHHHHHH
Q psy3965 215 EGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HS--------WRILQWVI 283 (535)
Q Consensus 215 ~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~--------Wr~~~~~~ 283 (535)
+.+....++.|++.+...++..+++.|++|+|+|+++.++...+..+|.++++.++..+ .+ ||..|++.
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ 163 (356)
T TIGR00901 84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT 163 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence 67888888899998999999999999999999999999999999999999999888655 25 99999998
Q ss_pred HHHHHHHHHHhh-hcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCch-
Q psy3965 284 TAPTIIFLILWW-CIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPL- 361 (535)
Q Consensus 284 ~~~~l~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 361 (535)
++..++..+..+ ..||+++. +.+.++.+ + +.+..++++++++.
T Consensus 164 ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~----------------------~----------~~~~~~~~~~~~~~~ 208 (356)
T TIGR00901 164 ALLILPGLLVTLFLAKEPQED---ASVPKPLT----------------------Q----------AVLKPIREFFQRKNM 208 (356)
T ss_pred HHHHHHHHHHHHHhccCCCcc---cccchhHH----------------------H----------HHHHHHHHHHHhcCc
Confidence 887766555444 45664321 00000000 0 00112344555554
Q ss_pred --HHHHHHHHHHHHhhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHH
Q psy3965 362 --MRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSI 439 (535)
Q Consensus 362 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (535)
.+...+...+..+.....+.....+..+.+.+......+.. ....+..+++.++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~----------------------~~~~~~~~~g~~~~g 266 (356)
T TIGR00901 209 IQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAK----------------------INGLLGAILGGLIGG 266 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhH----------------------HHHHHHHHHHHHHHH
Confidence 33333222222222222211122222222222111111000 000034567889999
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhH
Q psy3965 440 LILLKMGRRRPLCLTTMAAGVACLVTLAFP----------QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLG 509 (535)
Q Consensus 440 ~l~dr~grr~~l~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 509 (535)
++.||+|||+.+..+.++.++...++.+.. +..+......++..++.+...+...++..|.+|++.|++.
T Consensus 267 ~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 346 (356)
T TIGR00901 267 IIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQ 346 (356)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHH
Confidence 999999999988888877777665544431 2234445555666788888889999999999999999999
Q ss_pred HHHHHHHHh
Q psy3965 510 VGASSVPAG 518 (535)
Q Consensus 510 ~g~~~~~~~ 518 (535)
+|+.+...+
T Consensus 347 ~g~~~~~~~ 355 (356)
T TIGR00901 347 MALLSSLSA 355 (356)
T ss_pred HHHHHHHHh
Confidence 999887654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=189.92 Aligned_cols=314 Identities=10% Similarity=-0.028 Sum_probs=215.6
Q ss_pred CceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhH----HHHHHHHHHhhchhhccchHHHHHHH
Q psy3965 150 DTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRAL----MGSLVCQLVLGAGVAASPWFEGYLVL 220 (535)
Q Consensus 150 ~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l----~~~~~~~~i~~~~~~~~~s~~~l~~~ 220 (535)
|.+.+|+++ +++.+++.++..++++++|+ ++||+|||+.. ..+..+..+ ....++++++.+++.
T Consensus 28 ~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~-----l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~ 100 (382)
T TIGR00902 28 PAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAP-----LIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIA 100 (382)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHH
Confidence 344555655 88889999999999999999 99999985433 222222222 244577899999999
Q ss_pred HHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhc
Q psy3965 221 RAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCI 297 (535)
Q Consensus 221 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~l 297 (535)
|+++|.+.+...+...++..++ +++|++..+....+.++|.+++|.++..+ .|||..|++.++..++.++ .+.+
T Consensus 101 ~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~ 177 (382)
T TIGR00902 101 IGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLI 177 (382)
T ss_pred HHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHc
Confidence 9999999888889988887765 47788999999999999999999987766 3899998876654333333 3333
Q ss_pred ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhH
Q psy3965 298 PESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVY 377 (535)
Q Consensus 298 pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 377 (535)
+|+++ +++.++ +++.++..+.++++|+|+++...+...+.+....
T Consensus 178 ~~~~~----~~~~~~-------------------------------~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~ 222 (382)
T TIGR00902 178 KPTIP----PKDAIP-------------------------------EDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHA 222 (382)
T ss_pred CCCCC----CCcccc-------------------------------ccccccchhHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 44321 000000 0000112235678898888777666555444433
Q ss_pred HhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHH
Q psy3965 378 LVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMA 457 (535)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 457 (535)
..+.....+.++.+.+......+.+ +..++++++.++.+++.||+|+|+.+.++.+.
T Consensus 223 ~~~~~~~~~l~~~g~s~~~~g~l~~-----------------------~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~ 279 (382)
T TIGR00902 223 AYYGFSAIYWQAAGISASATGLLWG-----------------------IGVLAEIIIFAFSNKLFQNCSARDLLLISAIA 279 (382)
T ss_pred HHHHHHHHHHHHCCCCHhHHHHHHH-----------------------HHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHH
Confidence 3332223333334333221111111 12277888889999999999999999999998
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHH-HHhHHHHHHHHHHhhhhh
Q psy3965 458 AGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSV-PAGVALILIPYLWDMVNS 533 (535)
Q Consensus 458 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~-~~~ig~~i~P~i~~l~~~ 533 (535)
.++..+++.+. ++.+..+...++-++..+...+....++.+. |++.|+++.++.+. ...+|.+++|.+.+...+
T Consensus 280 ~~~~~~~~~~~-~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 280 CVGRWAIIGAI-EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHhH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777654 3445666667777888888888888888888 99999999999874 456888889988876544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=188.49 Aligned_cols=311 Identities=13% Similarity=0.126 Sum_probs=187.8
Q ss_pred eeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhH-HHHHHHHHHhhchhhccchHHHHHHHHHHHh
Q psy3965 152 IISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRAL-MGSLVCQLVLGAGVAASPWFEGYLVLRAMLG 225 (535)
Q Consensus 152 i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l-~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G 225 (535)
+++|+++ +++.+.+.+...+.+++.|. ++||+||||.+ +.+.++.+++..+.+++++++.+++.+.+.|
T Consensus 42 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~-----~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 116 (393)
T PRK15011 42 LTDEVHARPAMVGFFFTGSAVIGILVSQFLAG-----RSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLS 116 (393)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4556666 66655555544444556666 78999999875 4566666677778889999998877666555
Q ss_pred hhhhhhHHHHHhhhcccccCcch--hhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHH-Hhhhccc
Q psy3965 226 FVCVSIVFSGFVLCMEIVGGKWL--TIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLI-LWWCIPE 299 (535)
Q Consensus 226 ~~~~~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~-~~~~lpe 299 (535)
...+...+....++.|+.+++.| +...++.+.+.++|.+++|.++..+. |||..|++.++..++..+ .++++||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 196 (393)
T PRK15011 117 SFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPS 196 (393)
T ss_pred HHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 55567788888888888876655 34567888899999999999988773 999999988877666444 4556787
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV 379 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 379 (535)
.++- ++ ++ + ++ ....++ +.+..+.........+......
T Consensus 197 ~~~~---~~--~~----------------~------------~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 235 (393)
T PRK15011 197 MRKE---LP--LA----------------T------------GT------LEAPRR--NRRDTLLLFVICTLMWGTNSLY 235 (393)
T ss_pred cCCC---Cc--cc----------------c------------cc------cccccc--ccccHHHHHHHHHHHHHHHHHH
Confidence 6420 00 00 0 00 000000 0111122222222222222111
Q ss_pred hhhhhhcc-CccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 380 YYGLVLNL-SNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
......+. +.++.+......+.+ ...+..+++.++.|++.||+|||+.+..+....
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g~~~~-----------------------~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~ 292 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAGVMMG-----------------------TAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAG 292 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 11122221 222222111111111 111455677889999999999998877665555
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 459 GVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 459 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
.+.+..... .++.+..+...++..+..+...+....+..|.+|++ |+++.++.+....+|..++|.+.+...+
T Consensus 293 ~~~~~~~~~-~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~ 365 (393)
T PRK15011 293 VCFYAGMLM-AHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAE 365 (393)
T ss_pred HHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433332 233333344444444555555555667778999864 8999999998899999999998876543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-20 Score=191.19 Aligned_cols=318 Identities=11% Similarity=0.082 Sum_probs=212.8
Q ss_pred eeccCCC-----cchhHHHhhhhhhcceeeccCCccccccc----cCch-hhHHHHHHHHHHhhchhhccch------HH
Q psy3965 152 IISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSR----FGRK-RALMGSLVCQLVLGAGVAASPW------FE 215 (535)
Q Consensus 152 i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr----~Grr-~~l~~~~~~~~i~~~~~~~~~s------~~ 215 (535)
+.+++++ +++.++..+..++..++.|+ ++|| +||| +.++.+....+++.+++.+.++ +.
T Consensus 26 ~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~-----lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (437)
T TIGR00792 26 YTDVLGLSAAFVGTLFLVARILDAITDPIMGN-----IVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV 100 (437)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHhccchheE-----eeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence 4445555 78888999999999999999 9997 6874 4677788888888887776654 45
Q ss_pred HHHHHHHHHhhhhhhhHHHHHhhhcccc-cCcchhhhhhhhhhhhhhHHHHHHHHHhhh----------cchhHHHHHHH
Q psy3965 216 GYLVLRAMLGFVCVSIVFSGFVLCMEIV-GGKWLTIAGISYLFPVPLGYIAISGIAYYI----------HSWRILQWVIT 284 (535)
Q Consensus 216 ~l~~~r~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----------~~Wr~~~~~~~ 284 (535)
.+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+...+ .+||+.+.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~ 180 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA 180 (437)
T ss_pred HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 6778888999988888888888899987 468999999998888888776655443221 27999998888
Q ss_pred HHHHHHHH-HhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHH
Q psy3965 285 APTIIFLI-LWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMR 363 (535)
Q Consensus 285 ~~~l~~~~-~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (535)
++.++..+ ..+.++|.++. +.+ +++++.+.+..+++++++|.++
T Consensus 181 ~l~~~~~~~~~~~~~e~~~~-----~~~------------------------------~~~~~~~~~~~~~~l~~~~~~~ 225 (437)
T TIGR00792 181 LIGVVSLIICFFGTKERYSE-----IPK------------------------------NIEKKLSLKQIFKALFKNDQLL 225 (437)
T ss_pred HHHHHHHHHHHcCCEecCCC-----CCc------------------------------ccccCCCHHHHHHHHhCCHHHH
Confidence 87766544 45566775310 000 0000001122356677888877
Q ss_pred HHHHHHHHHHhhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHh
Q psy3965 364 LISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILL 443 (535)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d 443 (535)
...+..++.+...........++.+...++.. ..+. ...+..++.+++.++.+++.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~----------~~~~~~i~~ii~~~~~~~l~~ 282 (437)
T TIGR00792 226 ILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPE-------------LFSY----------MGSIAIVAGLIGVLLFPRLVK 282 (437)
T ss_pred HHHHHHHHHHHHHHHHcchhheeEeeecCChH-------------HHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 66555444443332221111111111100000 0000 001122677788899999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccc-------hhhhhhHHHHHHHH
Q psy3965 444 KMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFP-------TKMRNLGVGASSVP 516 (535)
Q Consensus 444 r~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~ 516 (535)
|+|||+.+..+..+.+++.+.+.+.+++.+...+..++.+++.+...+..+++.+|..| ++.+|.+.|+.+++
T Consensus 283 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 362 (437)
T TIGR00792 283 KFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFV 362 (437)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHH
Confidence 99999999988888777776666554444455555566777777777888888888765 45678999999999
Q ss_pred HhHHHHHHHHHHhhhh
Q psy3965 517 AGVALILIPYLWDMVN 532 (535)
Q Consensus 517 ~~ig~~i~P~i~~l~~ 532 (535)
..+|..++|.+.+..-
T Consensus 363 ~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 363 RKLGQALAGFLVGLIL 378 (437)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887643
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=216.63 Aligned_cols=314 Identities=10% Similarity=-0.045 Sum_probs=213.9
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHH---HHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMG---SLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSG 235 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~---~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~ 235 (535)
++..+++.++++++++++|. ++||+|||+++.. +.++..+..+.....++++.++++|+++|++.+...++.
T Consensus 55 ~l~~~~~~l~~~l~~~~~G~-----laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~ 129 (1140)
T PRK06814 55 TLAGAVFILPFFIFSALAGQ-----LADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIK 129 (1140)
T ss_pred HHHHHHHHHHHHHHhhhHHh-----hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHH
Confidence 77888999999999999999 9999999997633 223333333333445899999999999999999999999
Q ss_pred HhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHH
Q psy3965 236 FVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEE 312 (535)
Q Consensus 236 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~ 312 (535)
.+++.|++++++|++++++.+++.++|.+++|.+++++ .+|++.|+..++..++.++..+++|+++.- .++...+
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 207 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLKID 207 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeec
Confidence 99999999999999999999999999999999999887 389999855555555566666677765420 0000000
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhc-cCccC
Q psy3965 313 AMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLN-LSNIG 391 (535)
Q Consensus 313 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 391 (535)
... .+ .....++.+.+++.++...+...+.++........+..+ ...++
T Consensus 208 -----------------~~~---~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g 257 (1140)
T PRK06814 208 -----------------RNI---IR----------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLG 257 (1140)
T ss_pred -----------------cch---HH----------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Confidence 000 00 001135566777887777666555554433222222222 22223
Q ss_pred CceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc---
Q psy3965 392 GDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAF--- 468 (535)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~--- 468 (535)
.+......+. ...+++.+++.++.+++.++.++++.+..+.++.+++.+.+.+.
T Consensus 258 ~~~~~~g~~~-----------------------~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (1140)
T PRK06814 258 GDENVATLFL-----------------------AVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSS 314 (1140)
T ss_pred CchHHHHHHH-----------------------HHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccc
Confidence 2221111111 12236778889999999988776665555555554444433321
Q ss_pred ----------------CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 469 ----------------PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 469 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
....+...+..++.+++.+...+...+++.+..|++.||+++|+.+++..+|..+++.+.+...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 315 VPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred cccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233444555556667777777778899999999999999999999999999999998876653
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=191.32 Aligned_cols=313 Identities=12% Similarity=0.042 Sum_probs=194.5
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCc-hhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGR-KRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Gr-r~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
|++.+++.++.+++++++|. ++||+|| |+++.++.++.+++..+..+.++++.+.+.|++.|++.+...+...+
T Consensus 41 Gl~~a~~~~~~~i~~~~~g~-----l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 115 (418)
T TIGR00889 41 GWVYSSTGIAAILMPILVGI-----IADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNS 115 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHH
Confidence 89999999999999999999 9999965 77888888888888888889999999999999999987777766655
Q ss_pred hhc--------ccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHhhhcccchhHHHh
Q psy3965 238 LCM--------EIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILWWCIPESPRWLLT 306 (535)
Q Consensus 238 ~i~--------e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~ 306 (535)
+.. |......|.+..+ .+|.++++.++..+. .|+. |++.++..++..+..+++||+|+-
T Consensus 116 l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~~--- 185 (418)
T TIGR00889 116 ISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVFALTLPDIPVA--- 185 (418)
T ss_pred HHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHhcCCCCCCC---
Confidence 432 2233233444433 356666666665542 3443 445555555544556678887531
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhc
Q psy3965 307 MGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLN 386 (535)
Q Consensus 307 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (535)
+++.++ + .+ +..+.+.++++|+|.++...+..++........+.....+
T Consensus 186 ~~~~~~------------------~-----------~~--~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (418)
T TIGR00889 186 KSTAKM------------------S-----------IK--VMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGF 234 (418)
T ss_pred cccccc------------------C-----------HH--HHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHH
Confidence 000000 0 00 0001123456677765554444443333222221111122
Q ss_pred cCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q psy3965 387 LSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTL 466 (535)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~ 466 (535)
..+.+.+.... .++.....+ ....+..+.++++.+..+++.||+|||+.+..+.++.++...++.
T Consensus 235 ~~~~g~~~~~~-----~~~~~~~~g----------~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~ 299 (418)
T TIGR00889 235 LHEFGRNPEFA-----DSFVVKNAS----------IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFA 299 (418)
T ss_pred HHHhccccccc-----chhhhhhHH----------HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 22222111000 000000000 001122267778889999999999999999999888887766665
Q ss_pred hcCCC---hHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHH-HHHhHHHHHHHHHHhhhh
Q psy3965 467 AFPQG---SWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASS-VPAGVALILIPYLWDMVN 532 (535)
Q Consensus 467 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~ig~~i~P~i~~l~~ 532 (535)
..... .+......++.+++.+...+....++.|.+|++.|+++.|+.+ ....+|.+++|.+.+...
T Consensus 300 ~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~ 369 (418)
T TIGR00889 300 YGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV 369 (418)
T ss_pred HcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 53222 1233344555666666666777888999999999999999997 567789999999987543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=180.39 Aligned_cols=316 Identities=14% Similarity=0.097 Sum_probs=225.4
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccch---HHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPW---FEGYLVL 220 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s---~~~l~~~ 220 (535)
.+.|.+|+++ +++.++..+...+.-++.|. +.||||.|++..+++++..+-.+..+++.. ++.+++.
T Consensus 37 ~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~-----l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~ 111 (417)
T COG2223 37 GVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGF-----LTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVI 111 (417)
T ss_pred HhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHh-----hhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHH
Confidence 5667788888 78888888888999999999 999999999999999999999999988854 4599999
Q ss_pred HHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cc---hhHHHHHHHHHHHHHH-HH
Q psy3965 221 RAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HS---WRILQWVITAPTIIFL-IL 293 (535)
Q Consensus 221 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~---Wr~~~~~~~~~~l~~~-~~ 293 (535)
+++.|++ |+.+.+...++++++||+++|.++++.. ..++|..+...++..+ .+ ||....+..++.++.. ..
T Consensus 112 gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~ 189 (417)
T COG2223 112 GLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLA 189 (417)
T ss_pred HHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 7888999999999999999999999988 6666766655555443 14 9998888777766644 44
Q ss_pred hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCc-ccchhhccCchHHHHHHHHHHH
Q psy3965 294 WWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKK-VEVLDLWRTPLMRLISCVQYVV 372 (535)
Q Consensus 294 ~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 372 (535)
++...|.|...... ++.. ..++.++++++.|...+.....
T Consensus 190 ~~~~~d~p~~r~~~---------------------------------------~~~~~~~~~~v~~~~~~W~lsllY~~t 230 (417)
T COG2223 190 WLGMNDVPEHRASV---------------------------------------KPQLPAQLKAVFSNKDTWLLSLLYFAT 230 (417)
T ss_pred HHHhCCChhhhccc---------------------------------------cccchhHHHHHhcCcchHHHHHHHHHH
Confidence 55565555310000 0001 3355677788877766655443
Q ss_pred Hhh-hHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHH
Q psy3965 373 WFS-VYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPL 451 (535)
Q Consensus 373 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l 451 (535)
+.. ..+..+...+...+++.+.-....+.. ...+.+.+.+.++|+++||+|.++.+
T Consensus 231 FG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~-----------------------~f~~~g~l~Rp~GG~LsDR~Gg~rv~ 287 (417)
T COG2223 231 FGGFVGFSAYLPMYLVTQFGLSPVTAGLIAF-----------------------LFPLIGALARPLGGWLSDRIGGRRVT 287 (417)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHH-----------------------HHHHHHHHHHhccchhhhhccchhHH
Confidence 332 222223333333344433322111111 11155667788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHH
Q psy3965 452 CLTTMAAGVACLVTLAFP------QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIP 525 (535)
Q Consensus 452 ~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P 525 (535)
...+..++++..+....+ ...+......+...++.+......+.++...+|. ..+...|+...++.+|++.-|
T Consensus 288 ~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp 366 (417)
T COG2223 288 LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLP 366 (417)
T ss_pred HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchh
Confidence 988888888887777654 2333444445555666777777788888888887 458899999999999999999
Q ss_pred HHHhhhhhc
Q psy3965 526 YLWDMVNSF 534 (535)
Q Consensus 526 ~i~~l~~~~ 534 (535)
.......+.
T Consensus 367 ~~~g~~~~~ 375 (417)
T COG2223 367 LAFGVSLDL 375 (417)
T ss_pred HHHHHHHHh
Confidence 887765543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=188.94 Aligned_cols=299 Identities=12% Similarity=0.106 Sum_probs=193.6
Q ss_pred hcceeeccCCcccccccc-----Cchhh-HHHHHHHHHHhhchhhcc---chHHHHHHHHHHHhhhhhhhHHHHHhhhcc
Q psy3965 171 LSKLYTGQSNLDDTGSRF-----GRKRA-LMGSLVCQLVLGAGVAAS---PWFEGYLVLRAMLGFVCVSIVFSGFVLCME 241 (535)
Q Consensus 171 ig~~~~G~~~~~~l~Dr~-----Grr~~-l~~~~~~~~i~~~~~~~~---~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e 241 (535)
++.+++|+ ++||+ ||||. ++.+.++.+++..+.++. ++++.+.+.|++.|++.+...+...+++.|
T Consensus 60 ~~~~l~gp-----l~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~ 134 (491)
T PRK11010 60 VFKFLWSP-----LMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTD 134 (491)
T ss_pred HHHHHHHH-----HHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999 99999 99885 667777777777776665 478899999999999999999999999999
Q ss_pred cccCcchhhhhhhhhhhhhhHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHHHHHH
Q psy3965 242 IVGGKWLTIAGISYLFPVPLGYIAISGIAYYI----HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVL 317 (535)
Q Consensus 242 ~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~a~~~l 317 (535)
++|+++|+++.++...+..+|.++++.++..+ .|||..|++.++..++..+..+++||+++.. .+ ++.
T Consensus 135 ~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~~---- 206 (491)
T PRK11010 135 VLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PKT---- 206 (491)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-ccc----
Confidence 99999999999999999999999998877654 2799999998887777666656678865310 00 000
Q ss_pred HHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhh-hhhhhccCccCCceee
Q psy3965 318 KDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY-YGLVLNLSNIGGDVYV 396 (535)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 396 (535)
. + ++...+++++++++..+...+............+ +...+.....+.+...
T Consensus 207 --------------~----~---------~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~ 259 (491)
T PRK11010 207 --------------L----E---------QAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGE 259 (491)
T ss_pred --------------h----h---------hhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 0 0 0001124455665655443333322222221111 1122212222222211
Q ss_pred eeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH---HhcCCChH
Q psy3965 397 NTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVT---LAFPQGSW 473 (535)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~---~~~~~~~~ 473 (535)
...... ....++.+++.+++|++.||+|+|+.+.++.++.++..+.+ ....++.+
T Consensus 260 ~g~~~~----------------------~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~ 317 (491)
T PRK11010 260 VGLVNK----------------------TLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLY 317 (491)
T ss_pred HHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 111100 01115677899999999999999887776655544443322 22222332
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 474 MTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
......++..++.+...+..+++..+..|++.+++..|+.+....+|.++++.+.+..
T Consensus 318 ~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l 375 (491)
T PRK11010 318 SMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWF 375 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334433444445566678888888888899999999999999988776666543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-20 Score=184.91 Aligned_cols=313 Identities=12% Similarity=-0.015 Sum_probs=203.4
Q ss_pred ceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCch----hhHHHHHHHHHHhhchhhccchHHHHHHHH
Q psy3965 151 TIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRK----RALMGSLVCQLVLGAGVAASPWFEGYLVLR 221 (535)
Q Consensus 151 ~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr----~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r 221 (535)
...+|++. |+..+++.++..++++++|+ ++||+||| +.+.+...+. .......+++++.+++.|
T Consensus 29 ~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~-----l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~ 101 (382)
T PRK11128 29 VWLKGQGYTPETIGLLLGAGLVARFLGSLLIAP-----RVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAI 101 (382)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHH-----HHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHH
Confidence 44455555 88899999999999999999 99999994 3333222222 223344568999999999
Q ss_pred HHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcc
Q psy3965 222 AMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIP 298 (535)
Q Consensus 222 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lp 298 (535)
++.|++.+...+...+++.++ +++|++..+......++|..++|.++..+ .+||..|++.++..++..+..++.|
T Consensus 102 ~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 179 (382)
T PRK11128 102 GLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRP 179 (382)
T ss_pred HHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccC
Confidence 999999888888888887776 45677878888888899999999999876 3999999877765444433334445
Q ss_pred cchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHH
Q psy3965 299 ESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYL 378 (535)
Q Consensus 299 esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (535)
|.++ +++. ++..++...++++++|+|.++...+..++.......
T Consensus 180 ~~~~----~~~~--------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 223 (382)
T PRK11128 180 TIMP----QGES--------------------------------RQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAA 223 (382)
T ss_pred CCCC----cccc--------------------------------ccccccccchHHHHHcChhHHHHHHHHHHHHHHhHh
Confidence 4311 0000 000001123567888988887766655544433322
Q ss_pred hhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHH
Q psy3965 379 VYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAA 458 (535)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~ 458 (535)
.+.....+..+.+.+......+.+ +..+.+++..++.+++.||+++|+.+..+..+.
T Consensus 224 ~~~~~~~~~~~~g~s~~~~g~~~~-----------------------~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~ 280 (382)
T PRK11128 224 YYGFSAIYWQAAGYSASTIGYLWS-----------------------LGVVAEVLIFAFSNRLFRRWSARDLLLLSAICG 280 (382)
T ss_pred HHHHHHHHHHHCCCCHhHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 221112222222222111111100 112667778888999999999999998888887
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHH-HhHHHHHHHHHHhhhhh
Q psy3965 459 GVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVP-AGVALILIPYLWDMVNS 533 (535)
Q Consensus 459 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~ig~~i~P~i~~l~~~ 533 (535)
++..+++... ++.+..++..++.+++.+...+....+..+. +++.+++..++.+.. ..+|..++|.+.+...+
T Consensus 281 ~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 281 VVRWGLMGST-TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776665543 4455556666667777777667777777776 455568888887644 45677888888776544
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=182.14 Aligned_cols=317 Identities=15% Similarity=0.077 Sum_probs=191.1
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchh---hccc-----hHHHHHHHHHHHhhhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV---AASP-----WFEGYLVLRAMLGFVCVS 230 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~~~-----s~~~l~~~r~l~G~~~~~ 230 (535)
+++.+++.++..+++++.|+ ++||+|||+.++.+.....++.... .+.+ .+..+.+.|++.|++.+.
T Consensus 41 g~~~~~~~l~~~i~~~~~G~-----l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 115 (396)
T TIGR00882 41 GIVFSCISLFSILFQPLFGL-----ISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSA 115 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 78899999999999999999 9999999999988776665543322 2222 234566778889998888
Q ss_pred hHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHhhh-cccchhHHHhc
Q psy3965 231 IVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI--HSWRILQWVITAPTIIFLILWWC-IPESPRWLLTM 307 (535)
Q Consensus 231 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~--~~Wr~~~~~~~~~~l~~~~~~~~-lpesp~~l~~~ 307 (535)
..+....+..|..+ +++...+......++|.++++.+++.+ .+||..|++.++..++..+..+. .||+|+.
T Consensus 116 ~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---- 189 (396)
T TIGR00882 116 GAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSS---- 189 (396)
T ss_pred chhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchh----
Confidence 88888777766533 334455566666678888888877765 38999999888777765544443 3443321
Q ss_pred CCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhcc
Q psy3965 308 GKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNL 387 (535)
Q Consensus 308 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (535)
++.++ . .+.++++.+..+.++++|+|.++...+..+...............+.
T Consensus 190 ---~~~~~----~--------------------~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~ 242 (396)
T TIGR00882 190 ---ATVAN----A--------------------LGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFF 242 (396)
T ss_pred ---hhhhc----c--------------------cccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 00000111123456778888766544433322221111110111111
Q ss_pred CccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy3965 388 SNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLA 467 (535)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~ 467 (535)
.....+........+ . ...+..+.+.++.+..+++.||+|||+.+.++..+.++...+...
T Consensus 243 ~~~~~~~~~~~~~~g---------~----------~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~ 303 (396)
T TIGR00882 243 TSFFATPQQGTRVFG---------Y----------VTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF 303 (396)
T ss_pred HHhccccccchHHHH---------H----------HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 111000000000000 0 000112566777888999999999999998888877776665554
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHH-HHHHHhHHHHHHHHHHhhhhh
Q psy3965 468 FPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGA-SSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~ig~~i~P~i~~l~~~ 533 (535)
.+ +.+......++.+++..........+..+..|++.++++.+. .+....+|++++|.+.+...+
T Consensus 304 ~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 304 AT-TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 43 333444444555555544444555677788888888887766 567888999999988776543
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=170.15 Aligned_cols=308 Identities=11% Similarity=-0.025 Sum_probs=208.4
Q ss_pred eccCCCcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhH
Q psy3965 153 ISEPESHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIV 232 (535)
Q Consensus 153 ~~~~~l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~ 232 (535)
.++-.+|++.+.+.+..++.+++.|. +.||+|+|-.+++|+.+...++++.++.+++++++++|.+||+|.+...
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~-----l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGN-----LIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchh-----hHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 34455599999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccCc-chhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHhhhcccchhHHHhcC
Q psy3965 233 FSGFVLCMEIVGGK-WLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILWWCIPESPRWLLTMG 308 (535)
Q Consensus 233 ~~~~~~i~e~~~~~-~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~ 308 (535)
++..+++++.+|++ +|++++|+...+.++|.+++|..|+.+. |.+..|++.+++.++-..+.+++-|.-+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~------ 251 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE------ 251 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc------
Confidence 99999999999865 5799999999999999999999998874 8999999999998886666655544211
Q ss_pred CHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhcc-
Q psy3965 309 KTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNL- 387 (535)
Q Consensus 309 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 387 (535)
.+.++..+...+++++++|................++.-=.++.+.
T Consensus 252 ---------------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~ 298 (464)
T KOG3764|consen 252 ---------------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWML 298 (464)
T ss_pred ---------------------------------cCccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHH
Confidence 0000122344577888888765444433322222222211222221
Q ss_pred CccCC---ceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcC--ChhHHHHHHHHHHHHH
Q psy3965 388 SNIGG---DVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMG--RRRPLCLTTMAAGVAC 462 (535)
Q Consensus 388 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g--rr~~l~~~~~~~~i~~ 462 (535)
+.+.. .......-.. +..+++..+.+.+.||++ |-.....+++..++++
T Consensus 299 e~m~~p~w~~G~~fLp~~--------------------------~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~ 352 (464)
T KOG3764|consen 299 ETMFTPGWEVGLAFLPAS--------------------------LSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSS 352 (464)
T ss_pred HhccCCCcceeeeecccc--------------------------cchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence 11111 1122222222 677888999999999999 4333344444445444
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHhhh---hhhhcccccchh---hhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 463 LVTLAFPQGSWMTISLAMIGKFAISSSNVV---MPVYTAELFPTK---MRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~p~~---~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
....+..... ..++..+..+++.+...+. ...+..+.--.+ .-|...++......+|.++||.+.+..
T Consensus 353 ~~iP~~~~~~-~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~i 426 (464)
T KOG3764|consen 353 GPIPFATSIA-QLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSL 426 (464)
T ss_pred chhHhhhhHH-HHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchh
Confidence 4444443322 1222112222222222111 122222322222 457788888888889999999887643
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=185.76 Aligned_cols=343 Identities=14% Similarity=0.079 Sum_probs=228.2
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHH-HHHhhhhhhhHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLR-AMLGFVCVSIVFSGFV 237 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r-~l~G~~~~~~~~~~~~ 237 (535)
+|+.++......+.+++.+. +.||+|.|++.+.|.++.+++.++.+|++++|.+++.. ++.|+|.+..+..+.+
T Consensus 84 ~~i~sl~~~~~~~~gpl~s~-----l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiv 158 (509)
T KOG2504|consen 84 AWIGSLLLGVYLLAGPLVSA-----LCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVV 158 (509)
T ss_pred HHHHHHHHHHHHHhccHHHH-----HHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhh
Confidence 78999999999999999999 99999999999999999999999999999999877766 8999999999999999
Q ss_pred hhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhh-hcccchhHHHhcCCHHHH
Q psy3965 238 LCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWW-CIPESPRWLLTMGKTEEA 313 (535)
Q Consensus 238 ~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~-~lpesp~~l~~~~~~~~a 313 (535)
.+..++ +|+|+.+.++...+.++|.++-|.+.-.+ .|||+.+++.+.+.+-.++... .-|.+++- +.+.++.
T Consensus 159 iv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~---~~~~~~~ 234 (509)
T KOG2504|consen 159 ILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPK---KPNEEKD 234 (509)
T ss_pred hhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCC---Cchhhhh
Confidence 999776 68899999999999999999888877665 3999999887776655444433 33433321 0110100
Q ss_pred HHHHHHHHH--------Hc---CCCCCh---hhHHHHHHhhhhhhhccCCcccc---hhhccCchHHHHHHHHHHHHhhh
Q psy3965 314 MEVLKDAAR--------FN---DKTLPA---NTDKLLKQSVSSMKEDSGKKVEV---LDLWRTPLMRLISCVQYVVWFSV 376 (535)
Q Consensus 314 ~~~l~~~~~--------~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~ 376 (535)
.+...+... .. +..... ......++..++......+.... .++++++.+....+...+..+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~ 314 (509)
T KOG2504|consen 235 LRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGF 314 (509)
T ss_pred hccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHH
Confidence 000000000 00 000000 00000111111111001111222 57788876655544444333333
Q ss_pred HHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcC--ChhHHHHH
Q psy3965 377 YLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMG--RRRPLCLT 454 (535)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g--rr~~l~~~ 454 (535)
...++.+..+....+.+...... ..++.++..++++++.|++.|+.. ++....++
T Consensus 315 ~~p~~~l~~~~~~~g~~~~~aa~-----------------------l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ 371 (509)
T KOG2504|consen 315 NVPFVYLPSYAKSLGLSSNDAAF-----------------------LLSIIGVSDIIGRIILGLLADKPGIRALVLFLLT 371 (509)
T ss_pred HHHHHHHHHHHhhcCCChhhhHH-----------------------HHHHHHHhhhhhhhhhhhhcCccccchHHHHHHH
Confidence 33333333332233322221111 112344889999999999999987 44455566
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhhc
Q psy3965 455 TMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNSF 534 (535)
Q Consensus 455 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~~ 534 (535)
.++.+++.+...+.. ..+..+....+.+++.+...+.....+.|+.+.+.-..+.|+...+..++..++|.+.+...+.
T Consensus 372 ll~~gl~~~~~p~~~-~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~ 450 (509)
T KOG2504|consen 372 LLIAGLARLFLPFAT-TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDI 450 (509)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeec
Confidence 666666665555543 4456777777888888888777778999999999999999999999999999999998865543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-20 Score=194.38 Aligned_cols=147 Identities=11% Similarity=0.007 Sum_probs=127.2
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc-----------
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP----------- 212 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~----------- 212 (535)
.++++++|++ |++.+.+.++++++.++.|+ ++||+|||+++.++.++.++++++.++.+
T Consensus 56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~-----~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~ 130 (633)
T TIGR00805 56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSY-----FGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT 130 (633)
T ss_pred chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHH-----hhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence 5677777777 89999999999999999999 99999999999999999999999887753
Q ss_pred ----------------------------------------hHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhh
Q psy3965 213 ----------------------------------------WFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAG 252 (535)
Q Consensus 213 ----------------------------------------s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~ 252 (535)
.+..++++|+++|+|.+...+...+++.|++|+++|+++.
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~ 210 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI 210 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence 2567889999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhhhc-------------------------chhHHHHHHHHHHHHHHHHhhhcccc
Q psy3965 253 ISYLFPVPLGYIAISGIAYYIH-------------------------SWRILQWVITAPTIIFLILWWCIPES 300 (535)
Q Consensus 253 ~~~~~~~~lG~~i~~~l~~~~~-------------------------~Wr~~~~~~~~~~l~~~~~~~~lpes 300 (535)
+++..+..+|.+++++++..+. +||..|++.+++.++..+.++++|+.
T Consensus 211 ~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 211 GILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999999998876542 26667888787777765556666654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=171.56 Aligned_cols=340 Identities=14% Similarity=0.122 Sum_probs=207.0
Q ss_pred CcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 158 SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 158 l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
..|+.+.+.++..++.++.|. ++|.||||.+++.+.++..+|.+.++.++|...++++-.+.|+|.|.... ...
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~-----LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~ 153 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGR-----LSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AAL 153 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHH-----HHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHH
Confidence 388999999999999999999 99999999999999999999999999999999999999999999766654 455
Q ss_pred hhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH--hhhcccchhHHHhcCCHHH
Q psy3965 238 LCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLIL--WWCIPESPRWLLTMGKTEE 312 (535)
Q Consensus 238 ~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~--~~~lpesp~~l~~~~~~~~ 312 (535)
.++|..|.|+|....++......+....++.++..+ .+|||.|++..+...+.+++ +++.|. ++-..+++...
T Consensus 154 ~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP--~~~~~~~~~~s 231 (599)
T PF06609_consen 154 AISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPP--PRAQLHGRKLS 231 (599)
T ss_pred HHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCC--chhhhccccCc
Confidence 689999999998877766655555555566666544 38999999988766554333 333443 33222222211
Q ss_pred HHHHHHHHHHH----------------c--CC-CC----ChhhHHHHH------Hhhhhhhh-ccCCcccchhhccCchH
Q psy3965 313 AMEVLKDAARF----------------N--DK-TL----PANTDKLLK------QSVSSMKE-DSGKKVEVLDLWRTPLM 362 (535)
Q Consensus 313 a~~~l~~~~~~----------------~--~~-~~----~~~~~~~~~------~~~~~~~~-~~~~~~~~~~l~~~~~~ 362 (535)
.++.+++++-. + +. .. +.-+-...- .-.--|.. ..+++.-..++||+++.
T Consensus 232 ~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~ 311 (599)
T PF06609_consen 232 KREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRG 311 (599)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchH
Confidence 22333333211 1 11 01 111000000 00000111 11223334567776432
Q ss_pred HHHHHHHHHHHhhhHHhhhhhhhccCc-----cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHH
Q psy3965 363 RLISCVQYVVWFSVYLVYYGLVLNLSN-----IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAM 437 (535)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (535)
....+ +..+.....||......+. +..+.... ...+ ..+...+.+...+.++
T Consensus 312 ~~~~l---vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~-~~~~-------------------~~s~~~~fg~~~g~~i 368 (599)
T PF06609_consen 312 FAALL---VISFISGMNFFSVNILWPQQVVNVFGSDPISI-TEIG-------------------WISSPVGFGSCAGAVI 368 (599)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccCCCccc-ceee-------------------hhhhhHHHHHHHHHHH
Confidence 22211 1112222223322211111 11111000 0000 1111223566677888
Q ss_pred HHHHHhhcCChh-HHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHH
Q psy3965 438 SILILLKMGRRR-PLCLTTMAAGVACLVTLAF-PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSV 515 (535)
Q Consensus 438 ~~~l~dr~grr~-~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 515 (535)
.+.+..+++|-| .++++..++.+++-++... +++....+.+.++.+++.+.......+.+.-..|++.-+++.|+...
T Consensus 369 ~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s 448 (599)
T PF06609_consen 369 LGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGS 448 (599)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHH
Confidence 889999888754 4445555555444444333 44444456667788888888766777777788899999999999999
Q ss_pred HHhHHHHHHHHHH
Q psy3965 516 PAGVALILIPYLW 528 (535)
Q Consensus 516 ~~~ig~~i~P~i~ 528 (535)
+..+|+.++.-+.
T Consensus 449 ~R~~GGsIg~aIy 461 (599)
T PF06609_consen 449 IRSIGGSIGYAIY 461 (599)
T ss_pred HHHHhhHHHHHHH
Confidence 9999998887655
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=184.13 Aligned_cols=316 Identities=14% Similarity=0.065 Sum_probs=179.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhh---ccc-----hHHHHHHHHHHHhhhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVA---ASP-----WFEGYLVLRAMLGFVCVS 230 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~---~~~-----s~~~l~~~r~l~G~~~~~ 230 (535)
+++.+++.++..+++++.|+ ++||+|||++++++..+..++..... .++ .+....+++++.|.+...
T Consensus 49 g~~~s~~~l~~~i~~~~~G~-----l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (420)
T PRK09528 49 GIIFSANSLFALLFQPLYGL-----ISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLA 123 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 88899999999999999999 99999999999887666554433211 111 111122233333333322
Q ss_pred hHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHhhhc-ccchhHHHhc
Q psy3965 231 IVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH--SWRILQWVITAPTIIFLILWWCI-PESPRWLLTM 307 (535)
Q Consensus 231 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--~Wr~~~~~~~~~~l~~~~~~~~l-pesp~~l~~~ 307 (535)
..+....+..+ . .+++++..+.......+|..+++.++..+. +|++.|++.++..++..+..++. +|.++-.
T Consensus 124 ~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--- 198 (420)
T PRK09528 124 GAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTA--- 198 (420)
T ss_pred chhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchh---
Confidence 22323232222 1 345666777777778888888888877663 89999998887776655554443 3332200
Q ss_pred CCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh-hhhhhhc
Q psy3965 308 GKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV-YYGLVLN 386 (535)
Q Consensus 308 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 386 (535)
++.++. ++++++......++++|+|.++...+............ .....+.
T Consensus 199 ~~~~~~----------------------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 250 (420)
T PRK09528 199 KVANAL----------------------------GANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFF 250 (420)
T ss_pred hhccch----------------------------hcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00000001112345667776554443322222211111 0111111
Q ss_pred cCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q psy3965 387 LSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTL 466 (535)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~ 466 (535)
.+.... ........+ . ...+..+.+.++.++.+++.||+|||+.+..+.++.++..+++.
T Consensus 251 ~~~~~~-~~~~~~~~g---------~----------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~ 310 (420)
T PRK09528 251 ASFFAT-PEQGTRVFG---------Y----------LNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG 310 (420)
T ss_pred HHHHhc-cCcchHHHH---------H----------HHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence 111000 000000000 0 00011256678899999999999999998888888777777666
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHH-HHHHHhHHHHHHHHHHhhhhh
Q psy3965 467 AFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGA-SSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~ig~~i~P~i~~l~~~ 533 (535)
+.++ .+..+...++.+++.+...+....+..|.+|++.|++..+. .++...+|.+++|.+.+...+
T Consensus 311 ~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 311 FATG-PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred hccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 44444445555555555555666788899999999888766 577788999999988876543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=176.66 Aligned_cols=286 Identities=11% Similarity=0.067 Sum_probs=183.2
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccccc-----Cchh-hHHHHHHHHHHhhchhhcc---chHHHHHHHHHHHhhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF-----GRKR-ALMGSLVCQLVLGAGVAAS---PWFEGYLVLRAMLGFVCV 229 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~-----Grr~-~l~~~~~~~~i~~~~~~~~---~s~~~l~~~r~l~G~~~~ 229 (535)
|++..+... .+..+++|+ ++||+ |||| .+.++.++.+++..+.++. .+++.+.+..++.+++.+
T Consensus 37 g~~~~~~~~--~~~~~l~g~-----~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 109 (402)
T PRK11902 37 GFFSLVGQA--YIFKFLWAP-----LMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSA 109 (402)
T ss_pred HHHHHHHHH--HHHHHHHHH-----HHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH
Confidence 555444443 578899999 99999 8875 6888888887777777776 457888888888899999
Q ss_pred hhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHhhhcccchhHHH
Q psy3965 230 SIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI----HSWRILQWVITAPTIIFLILWWCIPESPRWLL 305 (535)
Q Consensus 230 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~ 305 (535)
...++..+++.|+.|+++|+++.++...+..+|.++++.++..+ .+||..|++.++..++..+..+++||+++.
T Consensus 110 ~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~-- 187 (402)
T PRK11902 110 SQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP-- 187 (402)
T ss_pred HHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc--
Confidence 99999999999999999999999999999999999998877654 289999999887766655555667776531
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhh-hhhh
Q psy3965 306 TMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY-YGLV 384 (535)
Q Consensus 306 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 384 (535)
+++.++.+ ++.+.++++++|+|.++...+...+........+ +...
T Consensus 188 -~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 234 (402)
T PRK11902 188 -ARPPRSLG--------------------------------EAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTT 234 (402)
T ss_pred -ccccchhH--------------------------------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00000000 0011235567888877765554443332222111 1111
Q ss_pred hccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q psy3965 385 LNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLV 464 (535)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~ 464 (535)
+.....+.+......+.+ ....++.+++.++++++.||+|||+.+..+..+..+..+.
T Consensus 235 ~l~~~~G~~~~~~g~~~~----------------------~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~ 292 (402)
T PRK11902 235 FLIRGAGFSAGEVGIVNK----------------------TLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLG 292 (402)
T ss_pred HHHHhcCCCHHHHHHHHh----------------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 222222222211111100 0001346788899999999999998877766655554433
Q ss_pred H---HhcCCChHHHHHHH----HHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 465 T---LAFPQGSWMTISLA----MIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 465 ~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
+ ...+++.+...... +..++..+...+....++.+.+|.+.++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (402)
T PRK11902 293 YWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYAL 343 (402)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3 23333434333333 23445555566777788888888776554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=176.44 Aligned_cols=342 Identities=13% Similarity=0.049 Sum_probs=204.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccc-cCchhhHHHHHHHHHHhhchhhccchHHH-HHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSR-FGRKRALMGSLVCQLVLGAGVAASPWFEG-YLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~s~~~-l~~~r~l~G~~~~~~~~~~~ 236 (535)
+++.+.+.....+..+++|+ ++|| +||||+++++.+++.++.++++++++... +.++|+++|+|.|...+...
T Consensus 53 ~~i~~~~~~~~~~~~~~~G~-----laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~ 127 (489)
T PRK10207 53 FITFGAFAALVYGLISIGGY-----VGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPA 127 (489)
T ss_pred HHHHHHHHHHHHHHHhhHHH-----hhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHH
Confidence 56667777777777889999 9999 99999999999999999999999876554 55899999999999999999
Q ss_pred hhhcccccCc--chhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHhhhcccchhHHH--hcCC
Q psy3965 237 VLCMEIVGGK--WLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILWWCIPESPRWLL--TMGK 309 (535)
Q Consensus 237 ~~i~e~~~~~--~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~--~~~~ 309 (535)
+++.|.+|++ +|+.+.+++..+.++|..++|.++.++. |||+.|++.++..++.++.++..++..+-.. .+++
T Consensus 128 ~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (489)
T PRK10207 128 SLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHK 207 (489)
T ss_pred HHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCcc
Confidence 9999999877 4577888999999999999998887773 8999998865533333333333332211000 0011
Q ss_pred HHHHHHHHH----------HHHHHcCCCCChhhHHHH----HHhhhhhhhccCCcccchhhccCchHHHHHHH--HHHHH
Q psy3965 310 TEEAMEVLK----------DAARFNDKTLPANTDKLL----KQSVSSMKEDSGKKVEVLDLWRTPLMRLISCV--QYVVW 373 (535)
Q Consensus 310 ~~~a~~~l~----------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~ 373 (535)
..+....+. ......+........-.. ....-. .++.+. .+++|+|.+....+. ..+.|
T Consensus 208 ~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~-~~~~~~----~~~~r~r~~~~~~l~~~~~~f~ 282 (489)
T PRK10207 208 PMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFF-REAFKL----DKTGRNKMFVAFVLMLEAVVFY 282 (489)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHhcC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 000000000000000000 000000 000000 134444443322211 22233
Q ss_pred hhhHHhhhhhhhccCc-cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChh---
Q psy3965 374 FSVYLVYYGLVLNLSN-IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRR--- 449 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~--- 449 (535)
.......+.+.++.++ ...+. .|......... .+..+..++..++.+++.||+++|+
T Consensus 283 ~~~~q~~~~l~l~~~~~~~~~~------~G~~i~~~~~~-------------~~n~~~iii~~pl~~~l~~rl~~r~~~~ 343 (489)
T PRK10207 283 ILYAQMPTSLNFFAINNVHHEI------LGFSINPVSFQ-------------ALNPFWVVVASPILAGIYTHLGSKGKDL 343 (489)
T ss_pred HHHHHcccHHHHHHHHhccccc------cceEECHHHHH-------------hHhHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 3333333333333331 11111 11000000000 0011334466677789999999886
Q ss_pred ----HHHHHHHHHHHHHHHHH-----hcC----CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHH
Q psy3965 450 ----PLCLTTMAAGVACLVTL-----AFP----QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVP 516 (535)
Q Consensus 450 ----~l~~~~~~~~i~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 516 (535)
.+.+++++.+++++.+. ... .+.+..+...++.+++.....+....++.+..|++.++.++|+.+..
T Consensus 344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~ 423 (489)
T PRK10207 344 SMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLT 423 (489)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 36667666666654321 111 12355556667778888888899999999999999999999999999
Q ss_pred HhHHHHHHHHHHh
Q psy3965 517 AGVALILIPYLWD 529 (535)
Q Consensus 517 ~~ig~~i~P~i~~ 529 (535)
..+|+.++..+..
T Consensus 424 ~~ig~~lg~~l~~ 436 (489)
T PRK10207 424 QAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888877763
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-18 Score=174.76 Aligned_cols=348 Identities=11% Similarity=0.005 Sum_probs=205.0
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccc-cCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSR-FGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
+++.+.+.++..++++++|+ ++|| +|||++++++.++.+++.++.+++++++.+.++|++.|+|.|...+...+
T Consensus 51 g~~~~~~~~~~~~~~~~~G~-----laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~ 125 (475)
T TIGR00924 51 FIIFGAYSALVYLLTSVGWW-----FGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSS 125 (475)
T ss_pred HHHHHHHHHHHHHHHhhHHH-----HHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHH
Confidence 77889999999999999999 9999 89999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcc---hhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcc----cchhHHHhc
Q psy3965 238 LCMEIVGGKW---LTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIP----ESPRWLLTM 307 (535)
Q Consensus 238 ~i~e~~~~~~---r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lp----esp~~l~~~ 307 (535)
+++|++|+++ |+.+.++...+.++|.++++.++..+ .+||+.|.+.++..++..+.+++.+ +.|+. ..+
T Consensus 126 ~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 204 (475)
T TIGR00924 126 MVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV-PDP 204 (475)
T ss_pred HHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCC-CCC
Confidence 9999998754 88889999999999999999998876 3899999887765444433333322 22210 000
Q ss_pred CCHHHHHHHHHH------------HHHHcCCCCChhh-HHH--HHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHH
Q psy3965 308 GKTEEAMEVLKD------------AARFNDKTLPANT-DKL--LKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVV 372 (535)
Q Consensus 308 ~~~~~a~~~l~~------------~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (535)
.+.++.+...+. ......+....+. ... ............+++.+..+-.|...+....+...+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 284 (475)
T TIGR00924 205 LSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVF 284 (475)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHH
Confidence 011110000000 0000000000000 000 0000000000000000000001111122222223333
Q ss_pred HhhhHHhhhhhhhccCc-cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCC----
Q psy3965 373 WFSVYLVYYGLVLNLSN-IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGR---- 447 (535)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr---- 447 (535)
|.........+.++..+ .+.+.....+-.+ . ...+.++.-++..++...+..|++|
T Consensus 285 ~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~------~-------------~~~~n~~~iil~~p~~~~~~~~l~~~~~~ 345 (475)
T TIGR00924 285 WVLYAQMPTSLNFFADNNMHHEMLGMSVPVI------W-------------FQSLNPFWVVVGSPVLAMIWTRLGRKGKD 345 (475)
T ss_pred HHHHHHhhhHHHHHHHHhccccccceEECHH------H-------------HHhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44333333333332221 1111110000000 0 0001112333333332232233333
Q ss_pred -hhHH--HHHHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHH
Q psy3965 448 -RRPL--CLTTMAAGVACLVTLAF--------PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVP 516 (535)
Q Consensus 448 -r~~l--~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 516 (535)
+... .+++++.+++++.+.+. +.+.+..+...++.+++.....|....++.+..|++.|++.+|+....
T Consensus 346 ~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~ 425 (475)
T TIGR00924 346 PTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLA 425 (475)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2333 66777777776665531 335556666677777888888899999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhh
Q psy3965 517 AGVALILIPYLWDMV 531 (535)
Q Consensus 517 ~~ig~~i~P~i~~l~ 531 (535)
..+|..+++.+..+.
T Consensus 426 ~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 426 QAMGSLLGGYLATFG 440 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887653
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=164.21 Aligned_cols=317 Identities=10% Similarity=-0.039 Sum_probs=226.8
Q ss_pred CCcCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchh---hccchHHHHH
Q psy3965 147 NFGDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV---AASPWFEGYL 218 (535)
Q Consensus 147 ~~~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~~~s~~~l~ 218 (535)
...|++++.|++ ++++..++.|+.+++++.|. +.+|+|+|+.+++++.++++++.+. +...+|..++
T Consensus 34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~-----~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL 108 (422)
T COG0738 34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGL-----LIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFL 108 (422)
T ss_pred hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHH-----HHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 337889999998 88899999999999999999 9999999999999999999999988 4668899999
Q ss_pred HHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc----------------------ch
Q psy3965 219 VLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH----------------------SW 276 (535)
Q Consensus 219 ~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----------------------~W 276 (535)
++-|+.|.|.+...+.+..++....++++....+.+.+...++|.+++|+++..+- .|
T Consensus 109 ~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v 188 (422)
T COG0738 109 VALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSV 188 (422)
T ss_pred HHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998899999999999999999999876541 36
Q ss_pred hHHHHHHHHHHHHHHHHhhh--cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccch
Q psy3965 277 RILQWVITAPTIIFLILWWC--IPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVL 354 (535)
Q Consensus 277 r~~~~~~~~~~l~~~~~~~~--lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (535)
|++|...+...+++.+.... .|+-+. ..+++.+++.....
T Consensus 189 ~~pYl~~~~~lvll~v~~~~~k~p~~~~--------------------------------------~~~~~~~~~~~~~~ 230 (422)
T COG0738 189 QFPYLILAGLLVLLAVLILLSKLPDLQV--------------------------------------AAPSLGASGSAGLS 230 (422)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCCcCCc--------------------------------------ccccccccccchHH
Confidence 66666655544444333322 222110 00011111112567
Q ss_pred hhccCchHHHHHHHHHHHHhhhHHhh-hhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehh
Q psy3965 355 DLWRTPLMRLISCVQYVVWFSVYLVY-YGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIP 433 (535)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (535)
+++++|+++...+..++.-....... +...+..+..+.+.... .......+ .+.++
T Consensus 231 ~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~a-------------a~~~s~~~----------~~~~v 287 (422)
T COG0738 231 SLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQA-------------AYYLSFFW----------VGFMV 287 (422)
T ss_pred HHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHH-------------HHHHHHHH----------HHHHH
Confidence 89999998888777665433322222 22222222122111100 00001111 67789
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHH
Q psy3965 434 AIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGAS 513 (535)
Q Consensus 434 ~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 513 (535)
|++++.++..|+...+.+....++..+.++...+.++ . ..+...++.++.++..+|..++...+..|. . ....|..
T Consensus 288 GRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g-~-v~~~~l~~ig~F~simfPTIfslal~~l~~-~-ts~~s~~ 363 (422)
T COG0738 288 GRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG-V-VALYALFLIGLFNSIMFPTIFSLALKNLGE-H-TSVGSGL 363 (422)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC-h-HHHHHHHHHHHHhHHHHHHHHHHHHhccCc-c-cccccee
Confidence 9999999999999888888887777766666666554 3 344455566788888999999999999993 3 3444555
Q ss_pred HHHHhHHHHHHHHHHhhhhh
Q psy3965 514 SVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 514 ~~~~~ig~~i~P~i~~l~~~ 533 (535)
..++-+|+++.|++.+...|
T Consensus 364 l~maivGGAiiP~l~G~i~d 383 (422)
T COG0738 364 LVMAIVGGAIIPPLQGVIAD 383 (422)
T ss_pred eeeheecchHHHHHHHHHHH
Confidence 56678899999999887655
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-18 Score=169.50 Aligned_cols=153 Identities=8% Similarity=-0.059 Sum_probs=131.7
Q ss_pred cCceeccCCC------cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHH
Q psy3965 149 GDTIISEPES------HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRA 222 (535)
Q Consensus 149 ~~~i~~~~~l------~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~ 222 (535)
.|.+.+|+|+ +.+.++++.+++++.++.|. ++||+|.|+++.++.+.+++..++.++++++..+.+.|+
T Consensus 49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~Gl-----LaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ 123 (511)
T TIGR00806 49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFL-----LTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEV 123 (511)
T ss_pred HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHH-----HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666 78889999999999999999 999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc--chhHHHH---HHHHHHHHHHHHhhhc
Q psy3965 223 MLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH--SWRILQW---VITAPTIIFLILWWCI 297 (535)
Q Consensus 223 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--~Wr~~~~---~~~~~~l~~~~~~~~l 297 (535)
+.|++.|+.. +...++..|+|+++|+++.++...+..+|.+++++++..+. +||+.+. +......+.++..+++
T Consensus 124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999 99999999999999999999999999999999999887763 8887543 3334444566667788
Q ss_pred ccchhHHHhc
Q psy3965 298 PESPRWLLTM 307 (535)
Q Consensus 298 pesp~~l~~~ 307 (535)
|..+|-+.-+
T Consensus 203 P~~~~sl~f~ 212 (511)
T TIGR00806 203 KRPKRSLFFN 212 (511)
T ss_pred CCCchhhhhc
Confidence 8665544433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=172.78 Aligned_cols=312 Identities=15% Similarity=0.112 Sum_probs=214.3
Q ss_pred CcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc-----chHHHHHHHHHHHhhhhhhhH
Q psy3965 158 SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS-----PWFEGYLVLRAMLGFVCVSIV 232 (535)
Q Consensus 158 l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~-----~s~~~l~~~r~l~G~~~~~~~ 232 (535)
+++++++..+..++.++++|. ++||+.||++++.+.++..+..++.++. .+.+.+++.-++.|++.+...
T Consensus 47 valv~~a~~LP~~Llsl~aG~-----laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~ 121 (524)
T PF05977_consen 47 VALVQAASTLPILLLSLFAGA-----LADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN 121 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 388889999999999999999 9999999999999998877665544332 578899999999999999999
Q ss_pred HHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCC
Q psy3965 233 FSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILWWCIPESPRWLLTMGK 309 (535)
Q Consensus 233 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~ 309 (535)
|+-.+++.|..|+++...+.++.+...++..++||.+++.+. |-.+.|++.++..++.+......+..++ +++
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~ 197 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----PSS 197 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----ccc
Confidence 999999999999999999999999999999999999988763 5566777766654443333333322110 000
Q ss_pred HHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhcc-C
Q psy3965 310 TEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNL-S 388 (535)
Q Consensus 310 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 388 (535)
. ..++.. +.-+..++-+.++|.++..++...+..+......-.+.+.. +
T Consensus 198 ~-~~e~~~-----------------------------~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~ 247 (524)
T PF05977_consen 198 L-PRERFF-----------------------------SALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARD 247 (524)
T ss_pred c-chhhhh-----------------------------hhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHH
Confidence 0 000000 00122344455566666554433332222221111222222 2
Q ss_pred ccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc
Q psy3965 389 NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAF 468 (535)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~ 468 (535)
.++.+......+.+ ..+++.++|.++.+++.+|+++++.+..+.++.+++++.+.+.
T Consensus 248 ~l~~~a~~yGll~a-----------------------~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 248 VLGGGASGYGLLLA-----------------------AFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS 304 (524)
T ss_pred HhCCcHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence 23333222122211 3347788888888888888888888888888888777776665
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 469 PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
+ +.+......++.+++.........+...+..|++.||+.+++..+....+..+|.++.+...
T Consensus 305 ~-~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 305 P-SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 34455556666777777777777889999999999999999999888888777777776543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-18 Score=174.92 Aligned_cols=172 Identities=10% Similarity=0.023 Sum_probs=128.4
Q ss_pred CCceEecCCCCcCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc-
Q psy3965 138 CQKWLYDTNNFGDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS- 211 (535)
Q Consensus 138 c~~w~y~~~~~~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~- 211 (535)
|.+-.|..+.+.+.+++++++ +++.++. ....+++++.|+ ++||+|||++++++.++..++.++++++
T Consensus 39 ~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~-----L~Dr~G~R~vllig~ll~~iG~ll~ala~ 112 (591)
T PTZ00207 39 CTSFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSF-----IYDYLGPRPIFVLSMTVFCLGTLLFALTF 112 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHH-----HHHHhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445557888899988 4444442 233345667899 9999999999999999999999999987
Q ss_pred -----chHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHH-HHHHhhh-cchhHHHHHHH
Q psy3965 212 -----PWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAI-SGIAYYI-HSWRILQWVIT 284 (535)
Q Consensus 212 -----~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~-~~l~~~~-~~Wr~~~~~~~ 284 (535)
++++.+.+.|++.|+|.+...+.+...+.+++| ++||++.++...+.++|.++. ++...++ .+|+..+++.+
T Consensus 113 ~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~ 191 (591)
T PTZ00207 113 QEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLM 191 (591)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 689999999999999999999999999999996 789999999999999999764 4444443 48998888877
Q ss_pred HHHHHHHH-Hhhh--cccchhHHHhcCCHHHHHHH
Q psy3965 285 APTIIFLI-LWWC--IPESPRWLLTMGKTEEAMEV 316 (535)
Q Consensus 285 ~~~l~~~~-~~~~--lpesp~~l~~~~~~~~a~~~ 316 (535)
+..++..+ .+++ .|++|+|...+++.+++++.
T Consensus 192 vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~ 226 (591)
T PTZ00207 192 SFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKA 226 (591)
T ss_pred HHHHHHHHHHHhheeCCcchhhcccccCCCHHHHH
Confidence 76655333 3333 46666665555444444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-16 Score=157.51 Aligned_cols=305 Identities=12% Similarity=0.063 Sum_probs=183.0
Q ss_pred HHHhhhhhhcceee-ccCCccccccccCchhhHHHHHHHH-HHhhchhh---ccch-HHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 163 MQSDFDVQLSKLYT-GQSNLDDTGSRFGRKRALMGSLVCQ-LVLGAGVA---ASPW-FEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 163 s~~~~g~~ig~~~~-G~~~~~~l~Dr~Grr~~l~~~~~~~-~i~~~~~~---~~~s-~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
++..+...+.+++. ++ .+||+||||..++...+. .+.....+ ...+ ...++..-++.++..+...+...
T Consensus 45 ~l~~~~~~l~~p~~~~~-----~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d 119 (390)
T TIGR02718 45 GLPWVVKFLWAPLVDNW-----WSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATD 119 (390)
T ss_pred HHHHHHHHHHHHHHhcc-----ccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666 66 799999999876555332 21122121 2222 33445556667777788888888
Q ss_pred hhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCCHHHH
Q psy3965 237 VLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEA 313 (535)
Q Consensus 237 ~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~~~~a 313 (535)
.+..|..++++++...+....+..+|.++++.+...+ .+||..|++.++..++..+..++++|+++. +.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~-- 194 (390)
T TIGR02718 120 GMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAP-- 194 (390)
T ss_pred HHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccc--
Confidence 8999999989889888888888899999998766554 399999999888776655554444443210 00000
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCccCCc
Q psy3965 314 MEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGD 393 (535)
Q Consensus 314 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (535)
+++..++++++|+|..+......++........+-....+..+.+.+
T Consensus 195 ---------------------------------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s 241 (390)
T TIGR02718 195 ---------------------------------LARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWP 241 (390)
T ss_pred ---------------------------------hhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCC
Confidence 00112345677877766555544433332222222222233333332
Q ss_pred eeeeeeEEccccCccccccccccccccCcCCccCc-eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc----
Q psy3965 394 VYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPG-IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAF---- 468 (535)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~---- 468 (535)
......+.. ..+ +..+++.++.+++.||+|+|+.+..+..+.++..+.....
T Consensus 242 ~~~ig~~~~-----------------------~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 298 (390)
T TIGR02718 242 LEWIGRLGM-----------------------AGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFW 298 (390)
T ss_pred HHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 211111111 011 2345667889999999999998887766553332222211
Q ss_pred -CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccch-hhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 469 -PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPT-KMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 469 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
............+..+..+..++..+....+..++ +.+++.+++.+....+|.+++|.+.+...+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~ 365 (390)
T TIGR02718 299 LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD 365 (390)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223333444555666666666676666665 889999999999999999999999876543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-16 Score=160.56 Aligned_cols=313 Identities=12% Similarity=0.028 Sum_probs=193.1
Q ss_pred eccCCC-----cchhHHHhhhhhhcceeeccCCccccccc----cCch-hhHHHHHHHHHHhhchhhccch------HHH
Q psy3965 153 ISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSR----FGRK-RALMGSLVCQLVLGAGVAASPW------FEG 216 (535)
Q Consensus 153 ~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr----~Grr-~~l~~~~~~~~i~~~~~~~~~s------~~~ 216 (535)
.+++++ +.+.++..+.-++..|+.|. ++|| +||| +.++.+.+..+++.++....|+ +..
T Consensus 37 t~~~gls~~~~g~i~~i~~i~dai~dp~~G~-----lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 37 TDVFGLSAAIMGTMFLVVRVLDAVTDPLMGA-----LVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcccceeeE-----eeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 345555 67778888888999999999 9998 7875 5555676777666655544443 456
Q ss_pred HHHHHHHHhhhhhhhHHHHHhhhcccc-cCcchhhhhhhhhhhhhhHHHHHHHHHh----hh------cchhHHHHHHHH
Q psy3965 217 YLVLRAMLGFVCVSIVFSGFVLCMEIV-GGKWLTIAGISYLFPVPLGYIAISGIAY----YI------HSWRILQWVITA 285 (535)
Q Consensus 217 l~~~r~l~G~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~i~~~l~~----~~------~~Wr~~~~~~~~ 285 (535)
+++..++.+.+.........++..|+. ++++|++..++...+..+|..+++.+.. .+ .+|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 666777777777777777778999988 4688998877777777777666654322 22 268877777776
Q ss_pred HHHHHHH-HhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHH
Q psy3965 286 PTIIFLI-LWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRL 364 (535)
Q Consensus 286 ~~l~~~~-~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (535)
..++..+ .++..+|.++. . ++++.+....++.++|++.++.
T Consensus 192 i~~v~~~~~~~~~~e~~~~----~----------------------------------~~~~~~~~~~~~~~~~n~~~~~ 233 (444)
T PRK09669 192 LGVVLFFCCFFMTKERYTP----E----------------------------------VDNSSSVWKDLKLLLGNSQWRI 233 (444)
T ss_pred HHHHHHHHHhCCeEEecCC----C----------------------------------CcCCCCHHHHHHHHhCCchHHH
Confidence 6655433 34444553210 0 0000111234566788888776
Q ss_pred HHHHHHHHHhhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhh
Q psy3965 365 ISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLK 444 (535)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr 444 (535)
.....++.+...........++......+......+ .....+..+++.++.+++.||
T Consensus 234 l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~-----------------------~~~~~i~~ii~~~~~~~l~~r 290 (444)
T PRK09669 234 MFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLF-----------------------LVTGMIAGLFGALLSERLLGK 290 (444)
T ss_pred HHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 655544333332221111111111111100000000 001114556777888999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccc-------hhhhhhHHHHHHHH
Q psy3965 445 MGRRRPLCLTTMAAGVACLVTLAF-PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFP-------TKMRNLGVGASSVP 516 (535)
Q Consensus 445 ~grr~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~ 516 (535)
+|+|+.+..+..+.++..+.+.+. +++.+...+..++.+++.+...+..+++.+|..+ .+..|...|+.+.+
T Consensus 291 ~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~ 370 (444)
T PRK09669 291 FDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFA 370 (444)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHH
Confidence 999999888776655444433333 3344455555667778888888888999998875 22346677888889
Q ss_pred HhHHHHHHHHHHhhh
Q psy3965 517 AGVALILIPYLWDMV 531 (535)
Q Consensus 517 ~~ig~~i~P~i~~l~ 531 (535)
..+|..++|.+.+..
T Consensus 371 ~klg~alg~~i~g~l 385 (444)
T PRK09669 371 IKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888764
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-16 Score=147.87 Aligned_cols=315 Identities=15% Similarity=0.082 Sum_probs=234.6
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAM 223 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l 223 (535)
.++|.+|+++ |+++++..+...+.+++..+ ++.|+|.++.+..++++.+++.++-... +.+.++.+-.+
T Consensus 35 L~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~-----Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l 108 (395)
T COG2807 35 LDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPR-----LARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLL 108 (395)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHH
Confidence 5778888888 88899999999999999999 9999999999999999999999999887 88889999999
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHhhhccc
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI----HSWRILQWVITAPTIIFLILWWCIPE 299 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----~~Wr~~~~~~~~~~l~~~~~~~~lpe 299 (535)
.|.|.+......+.++-+.+| |+-+..++++.....+|..+++.+..-+ .+||....+-+.++++.++.|+.-
T Consensus 109 ~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq-- 185 (395)
T COG2807 109 AGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ-- 185 (395)
T ss_pred HHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh--
Confidence 999999999999999999997 5568888898888888887777666544 479999999999988888776532
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh
Q psy3965 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV 379 (535)
Q Consensus 300 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 379 (535)
..|. + ....+.+..+..+++|+|.-+..++.+. .++..
T Consensus 186 ~~r~-----~---------------------------------~~~~~~~~~~~~~vw~~~~aW~vtLfmG----lqS~~ 223 (395)
T COG2807 186 ALRE-----Q---------------------------------AASIATKLVSVRKVWRSPLAWQVTLFMG----LQSLL 223 (395)
T ss_pred cccc-----c---------------------------------ccccccccccccccccCchhHHHHHHHH----hhHHH
Confidence 1110 0 0011112334456889998777766554 45566
Q ss_pred hhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhc-CChhHHHHHHHHH
Q psy3965 380 YYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM-GRRRPLCLTTMAA 458 (535)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~ 458 (535)
||...-+.+.+-.+...+....| ....+..+.+++..+....+.+|. ++|+..+....++
T Consensus 224 ~Y~~~~WLP~ili~~G~sa~~aG-------------------~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~ 284 (395)
T COG2807 224 YYIVIGWLPAILIDRGLSAAEAG-------------------SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLM 284 (395)
T ss_pred HHHHHHHHHHHHHHcCCCHHHhh-------------------hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 66666555544333222222111 111123377889999999999965 5677777777777
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccch-hhhhhHHHHHHHHHhHHHHHHHHHHhhhhhcC
Q psy3965 459 GVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPT-KMRNLGVGASSVPAGVALILIPYLWDMVNSFT 535 (535)
Q Consensus 459 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~~~ 535 (535)
.++.+.+.+.|...+... +++.+++.+..++.....+.....+ +..+.-.|+...++++-+..+|++.+..+|.+
T Consensus 285 l~G~~G~~~~P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~ 360 (395)
T COG2807 285 LVGLVGLLLAPGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT 360 (395)
T ss_pred HHHHHHHHHhhhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence 788877777776653333 4677788888888888777766554 44455668888888999999999999887753
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=160.65 Aligned_cols=309 Identities=11% Similarity=0.140 Sum_probs=216.5
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccc----ccCchh-hHHHHHHHHHHhhchhhcc-c-------hHHHHHHHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGS----RFGRKR-ALMGSLVCQLVLGAGVAAS-P-------WFEGYLVLRAMLG 225 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~D----r~Grr~-~l~~~~~~~~i~~~~~~~~-~-------s~~~l~~~r~l~G 225 (535)
+++..+.-+-.++..|+.|. ++| |+|||| .++++.++.+++.++.... | .+..+.+..++..
T Consensus 40 g~i~~~~~i~dai~dp~~G~-----~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~ 114 (428)
T PF13347_consen 40 GLILLVGRIWDAITDPLIGY-----LSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFD 114 (428)
T ss_pred HHHHHHHHHhhhhcCCcEEE-----EEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHH
Confidence 56666667777778889999 999 899765 4556878888887777766 4 2334577777778
Q ss_pred hhhhhhHHHHHhhhccccc-CcchhhhhhhhhhhhhhHHHHHHHHHhhh----c------chhHHHHHHHHHHHHHHH-H
Q psy3965 226 FVCVSIVFSGFVLCMEIVG-GKWLTIAGISYLFPVPLGYIAISGIAYYI----H------SWRILQWVITAPTIIFLI-L 293 (535)
Q Consensus 226 ~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----~------~Wr~~~~~~~~~~l~~~~-~ 293 (535)
++.........++..|..+ +++|.+..+.-+.+..+|.++...+...+ . +|++...+.+++.++..+ .
T Consensus 115 ~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~ 194 (428)
T PF13347_consen 115 IAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLIT 194 (428)
T ss_pred HhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhh
Confidence 9988888888999999998 57899999998888888886555444332 1 689988888877766444 4
Q ss_pred hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHH
Q psy3965 294 WWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVW 373 (535)
Q Consensus 294 ~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 373 (535)
.+..+|.++ + .++++++.+-+..++.++++|.++...+...+.+
T Consensus 195 ~~~~ke~~~------~------------------------------~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~ 238 (428)
T PF13347_consen 195 FFFVKERSV------E------------------------------VTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQW 238 (428)
T ss_pred hheeeeccc------c------------------------------ccccccccccccchhhhcccchHHHHHHHHHHHH
Confidence 555666110 0 0011112223456788899999888777776665
Q ss_pred hhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHH
Q psy3965 374 FSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCL 453 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~ 453 (535)
+..........++....-++......+. ....+..+++.++.+++.||+|+|+.+..
T Consensus 239 ~~~~~~~~~~~y~~~~vl~~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~l~~r~gk~~~~~~ 295 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTYVLGNEGLISIFM-----------------------LIFFVASIVGSPLWGRLSKRFGKKKVYII 295 (428)
T ss_pred hhhhhhhhHHHHHHHHHhcCchhhHHHH-----------------------HHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence 5444332222222222111111111100 01126778889999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhhhhhhhcccccch-------hhhhhHHHHHHHHHhHHHHHHH
Q psy3965 454 TTMAAGVACLVTLAFP-QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPT-------KMRNLGVGASSVPAGVALILIP 525 (535)
Q Consensus 454 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~ig~~i~P 525 (535)
+..+.+++.+++.+.+ .+.+...+..++.+++.+..+...+++.+|..+. +..|...|+.+....++..+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~ 375 (428)
T PF13347_consen 296 GLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAG 375 (428)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHH
Confidence 9999998888887776 5666777778888888888888999999998873 3347888999999999999998
Q ss_pred HHHhhh
Q psy3965 526 YLWDMV 531 (535)
Q Consensus 526 ~i~~l~ 531 (535)
.+.+..
T Consensus 376 ~i~g~~ 381 (428)
T PF13347_consen 376 AIVGLL 381 (428)
T ss_pred HHHHHH
Confidence 877654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=158.68 Aligned_cols=132 Identities=14% Similarity=-0.034 Sum_probs=104.1
Q ss_pred eccCCC-----cchhHHHhhhhhhcceeeccCCccccccc-cCchhhHHHHHHHHHHhhchhhccc-hHHHHHHHHHHHh
Q psy3965 153 ISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSR-FGRKRALMGSLVCQLVLGAGVAASP-WFEGYLVLRAMLG 225 (535)
Q Consensus 153 ~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~-s~~~l~~~r~l~G 225 (535)
.+++|+ ++..+.+........+++|+ ++|| +|||++++++.++.+++.+++++++ +.+.+.++|++.|
T Consensus 49 ~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~-----LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~g 123 (500)
T PRK09584 49 VKQLGMSEADSITLFSSFSALVYGLVAIGGW-----LGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIA 123 (500)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 345555 33444444444444568899 9999 5999999999999999999988874 5667788999999
Q ss_pred hhhhhhHHHHHhhhcccccCcc--hhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHH
Q psy3965 226 FVCVSIVFSGFVLCMEIVGGKW--LTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTII 289 (535)
Q Consensus 226 ~~~~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~ 289 (535)
++.|...+...+++.|++|+++ |+.+.+++..+..+|..++|.+++++ .|||+.|++.++..++
T Consensus 124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 9999988988899999998653 44577888889999999999988877 3899999987754444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=155.86 Aligned_cols=312 Identities=10% Similarity=0.064 Sum_probs=187.2
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccc----ccCc-hhhHHHHHHHHHHhhchhhccch------HHHHHHHHHHHhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGS----RFGR-KRALMGSLVCQLVLGAGVAASPW------FEGYLVLRAMLGFV 227 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~D----r~Gr-r~~l~~~~~~~~i~~~~~~~~~s------~~~l~~~r~l~G~~ 227 (535)
|.+..+.-+--++..|+.|. ++| |+|| |+.++.+.+..+++.++....++ +..+++..++.+++
T Consensus 45 g~i~~i~ri~dai~dp~~G~-----lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~ 119 (473)
T PRK10429 45 GTLFLVARIWDAINDPIMGW-----IVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMT 119 (473)
T ss_pred HHHHHHHHHHHHHhhchhee-----ehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHH
Confidence 66667777777888999999 999 6698 56666677777777655544331 34566666777888
Q ss_pred hhhhHHHHHhhhcccc-cCcchhhhhhhhhhhhhhHHHHHHHHHhh----h------cchhHHHHHHHHHHHHHH-HHhh
Q psy3965 228 CVSIVFSGFVLCMEIV-GGKWLTIAGISYLFPVPLGYIAISGIAYY----I------HSWRILQWVITAPTIIFL-ILWW 295 (535)
Q Consensus 228 ~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~i~~~l~~~----~------~~Wr~~~~~~~~~~l~~~-~~~~ 295 (535)
.....+...++..|.. ++++|.+..++...+..+|.++.+.+... . .+|+....+.++..++.. +..+
T Consensus 120 ~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~ 199 (473)
T PRK10429 120 YTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLR 199 (473)
T ss_pred HHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 8888888889999999 58999998888666666665554443321 1 146666666655555433 3344
Q ss_pred hcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhh
Q psy3965 296 CIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFS 375 (535)
Q Consensus 296 ~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 375 (535)
..+|.+.. .. ++ .+++++.+.+..++.+++++.++..+...++.+..
T Consensus 200 ~~~e~~~~----~~-~~----------------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~ 246 (473)
T PRK10429 200 NVHEVYSS----DN-QV----------------------------SAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIA 246 (473)
T ss_pred CceecCCc----cc-cc----------------------------cccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45664210 00 00 00000011122344566777776665554444433
Q ss_pred hHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHH
Q psy3965 376 VYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTT 455 (535)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~ 455 (535)
.........++.....++...... ...+.+++.+++.++.+++.||+|+|+.+..+.
T Consensus 247 ~~~~~~~~~y~~~y~~~~~~~~~~-----------------------~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~ 303 (473)
T PRK10429 247 SNIINGFAIYYFTYVIGDADLFPY-----------------------YLSYAGAANLVTLILFPRLVKSLSRRILWAGAS 303 (473)
T ss_pred HHHHhhheeeEEEEECCCHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 222211111111111111000000 001112566788888999999999999988877
Q ss_pred HHHHHHHHHHHh---c-CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccc-----h--hhhhhHHHHHHHHHhHHHHHH
Q psy3965 456 MAAGVACLVTLA---F-PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFP-----T--KMRNLGVGASSVPAGVALILI 524 (535)
Q Consensus 456 ~~~~i~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~--~~r~~~~g~~~~~~~ig~~i~ 524 (535)
.+..++.+.+.. . ++..+..++..++.+++.+..++..+++.+|..+ + +..|...|..+++..+|..++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~ 383 (473)
T PRK10429 304 IFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFA 383 (473)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHH
Confidence 765555444332 2 2334444555566667777777888888999855 3 334667888899999999999
Q ss_pred HHHHhhh
Q psy3965 525 PYLWDMV 531 (535)
Q Consensus 525 P~i~~l~ 531 (535)
+.+.+..
T Consensus 384 ~~i~g~~ 390 (473)
T PRK10429 384 AFFIGVV 390 (473)
T ss_pred HHHHHHH
Confidence 9887754
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-15 Score=150.81 Aligned_cols=326 Identities=11% Similarity=0.067 Sum_probs=201.2
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccc----ccCchhhHHHH-HHHHHHhhchhhccchHH-----------------H
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGS----RFGRKRALMGS-LVCQLVLGAGVAASPWFE-----------------G 216 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~D----r~Grr~~l~~~-~~~~~i~~~~~~~~~s~~-----------------~ 216 (535)
+++..+..+..++.+++.|. ++| |+||||.++++ .+...++.++.++++++. .
T Consensus 42 ~~i~~~~~l~~~i~~Pi~G~-----lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~ 116 (477)
T TIGR01301 42 SIIWLCGPLSGLLVQPLVGY-----LSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIV 116 (477)
T ss_pred HHHHHHHHHHHHHHHhHeee-----hhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHH
Confidence 67778888999999999999 999 59999998875 666666667777776653 2
Q ss_pred HHHHHHHHhhhhhhhHHHHHhhhcccccCcch--hhhhhhhhhhhhhHHHHHHHHHhhhc------------------ch
Q psy3965 217 YLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWL--TIAGISYLFPVPLGYIAISGIAYYIH------------------SW 276 (535)
Q Consensus 217 l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~lG~~i~~~l~~~~~------------------~W 276 (535)
++++-.+..++.....+...+++.|.+|+++| +.+.++.+....+|.++++.+++... +.
T Consensus 117 ~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 196 (477)
T TIGR01301 117 FVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANL 196 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchH
Confidence 23333344557778888889999999998865 57889999999999999998886531 45
Q ss_pred hHHHHHHHHHHHH-HHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchh
Q psy3965 277 RILQWVITAPTII-FLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLD 355 (535)
Q Consensus 277 r~~~~~~~~~~l~-~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (535)
|..|++.++..++ ..+..+.++|.|.. ..++.++ + +.+ +.++.+....+++
T Consensus 197 ~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~~~~~~--~---~~~---------------------~~~~~~~~~~~~~ 248 (477)
T TIGR01301 197 KSCFLIDIILLAILTYIALSAVKENPLI--GSDDFIN--S---EAA---------------------PPSKHGEEAFFGE 248 (477)
T ss_pred HHHHHHHHHHHHHHHHHHeeeeeccCCC--ccccchh--h---hcc---------------------cccccchhhhHHH
Confidence 7788887776666 44456778887531 1000000 0 000 0000000111222
Q ss_pred hcc-----CchHHHHHHHHHHHHhhhHHh-hhhhhhccC-ccCCceeeeeeEEccccCccccccccccccccCcCCccCc
Q psy3965 356 LWR-----TPLMRLISCVQYVVWFSVYLV-YYGLVLNLS-NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPG 428 (535)
Q Consensus 356 l~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (535)
+++ .+.+++..++.++.|+..... +|......+ .++++..... .|. ...... .+...+.+
T Consensus 249 i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~-----~y~-~gvr~G-------~~~l~~~s 315 (477)
T TIGR01301 249 LFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA-----KYD-DGVRAG-------AFGLMLNS 315 (477)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh-----HHH-HHHHHH-------HHHHHHHH
Confidence 222 356777788888888754322 222222111 1111111000 000 000000 00011112
Q ss_pred eeehhhHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHhcCC------C--------------hHHHHHHHHHHHHHHH
Q psy3965 429 IVEIPAIAMSILILLKMGR-RRPLCLTTMAAGVACLVTLAFPQ------G--------------SWMTISLAMIGKFAIS 487 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~gr-r~~l~~~~~~~~i~~~~~~~~~~------~--------------~~~~~~~~~~~~~~~~ 487 (535)
+...+.+++..++.+|+|+ |....++.++.+++++...+... . .+..++.....++..+
T Consensus 316 ~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A 395 (477)
T TIGR01301 316 VVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLA 395 (477)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHH
Confidence 3444566677788899985 66667787777777766654331 0 2455555666778888
Q ss_pred HHhhhhhhhcccccchh--hhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 488 SSNVVMPVYTAELFPTK--MRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 488 ~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
..+++.++++++..|++ ..|..+|+.|.+.-+..++..+..+.
T Consensus 396 ~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 396 ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999954 44899999999999888887765554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=155.82 Aligned_cols=336 Identities=11% Similarity=-0.011 Sum_probs=204.1
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccC-----chhhHHHHHHHH-HHhhchhhccchHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFG-----RKRALMGSLVCQ-LVLGAGVAASPWFEGY 217 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~G-----rr~~l~~~~~~~-~i~~~~~~~~~s~~~l 217 (535)
.+-+.+++++ +...+...+...+-.+ +|+ ++||++ ||+.++++.++. .+.....+..++...+
T Consensus 49 ~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~-----l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~ 122 (468)
T TIGR00788 49 SPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGV-----MSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKV 122 (468)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHH-----HHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 4555666777 4556777777777555 999 999998 777778777766 3444444444554444
Q ss_pred H-HHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhh---hhHHHHHHHHHhhhc---chhHHHHHHHHHHHHH
Q psy3965 218 L-VLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPV---PLGYIAISGIAYYIH---SWRILQWVITAPTIIF 290 (535)
Q Consensus 218 ~-~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~---~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~ 290 (535)
. +.+++.+++.+...++...+..|..+ +++....+.....+ .+|.++++.+++.+. +||..|++.++..++.
T Consensus 123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~ 201 (468)
T TIGR00788 123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ 201 (468)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 4 48899999999999999999999998 55554444443433 478888888877653 7999999888777666
Q ss_pred HHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHH
Q psy3965 291 LILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQY 370 (535)
Q Consensus 291 ~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 370 (535)
.+..++++|++.....+. .++....... ......+ ...+.....++.+++|..++..+..+
T Consensus 202 ~~~~~~~~E~~~~~~~~~-~~~~~~~~~~----------------~~~~~~~--~~~~~~~~l~~~l~~~~i~~~l~fif 262 (468)
T TIGR00788 202 LFVSNLSKERRAFVRPRI-GTYLEMNMAL----------------LTLGVLA--NVKVQILGLRGAIQLLEIAKPLIFIF 262 (468)
T ss_pred HHHHHhcccccccccccc-cccchhhhhh----------------hhhhHHH--HHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 666677888631000000 0000000000 0000000 00000112344566676665444333
Q ss_pred HHHhhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhH
Q psy3965 371 VVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRP 450 (535)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~ 450 (535)
+.+.. .+......+. ......+++....+.... +.+++++++..+.+.+.+|++.|+.
T Consensus 263 l~~~~-----------~~~~~~~~f~-~~~~~lG~s~~~~G~~~~----------~~~v~~i~g~~~~~~~~~~~~~r~~ 320 (468)
T TIGR00788 263 LSYAN-----------LPGASGSVFC-ATTQCLPGGPSFSGMSKV----------VGNLGSLCGVGGYDRFLKTFPYRLL 320 (468)
T ss_pred HHHhh-----------cCCCCceeEE-EEcccCCCCcchhhhHHH----------HHHHHHHHHHHHHHHHHhhCCHHHH
Confidence 21110 0111111111 000112333333222211 2237778888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHH
Q psy3965 451 LCLTTMAAGVACLVTLAFP---------QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVAL 521 (535)
Q Consensus 451 l~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~ 521 (535)
+.++.++.+++.+...... ...+......++..++.+..+.....++.+..|++.+++..++.+.+..+|.
T Consensus 321 l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~ 400 (468)
T TIGR00788 321 FGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGS 400 (468)
T ss_pred HHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHH
Confidence 9988888877664432110 1122334445566677777777788999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q psy3965 522 ILIPYLWDMVN 532 (535)
Q Consensus 522 ~i~P~i~~l~~ 532 (535)
.+++.+.+...
T Consensus 401 ~v~~~~gg~l~ 411 (468)
T TIGR00788 401 SVSGFLGVLLM 411 (468)
T ss_pred HHHHHHHHHHH
Confidence 99998766543
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-15 Score=147.06 Aligned_cols=310 Identities=15% Similarity=0.145 Sum_probs=211.0
Q ss_pred CcchhHHHhhhhhhcceeeccCCccccccccC-chhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 158 SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFG-RKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 158 l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~G-rr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
+|.+.++..+..+++++++|. ++||.+ +|+++.+..++.++........++++.+++.-++..+......+...
T Consensus 39 IG~l~a~~~~~~i~~~~~~g~-----~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~d 113 (400)
T PF03825_consen 39 IGILLAVGPLARIVSPPFWGA-----IADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSD 113 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHH
Confidence 388999999999999999999 999987 57888788888888777778889999999998888988888889998
Q ss_pred hhhcccccCcchhhhhhhhhhhhhhHHHHHHHH-----Hhhh--cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCC
Q psy3965 237 VLCMEIVGGKWLTIAGISYLFPVPLGYIAISGI-----AYYI--HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGK 309 (535)
Q Consensus 237 ~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l-----~~~~--~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~ 309 (535)
++..+...+ ++.-.+-.....++|.+++... .... .+....+++.+...++.....+.+|+.|+- ++
T Consensus 114 si~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~----~~ 187 (400)
T PF03825_consen 114 SIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPK----RS 187 (400)
T ss_pred HHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccc----cc
Confidence 888888763 2233334444455555555332 1111 122345555555555555555667876520 00
Q ss_pred HHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCc
Q psy3965 310 TEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSN 389 (535)
Q Consensus 310 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (535)
. +++.++....+..+++|+|+.....+..++........|.....+.++
T Consensus 188 ~-------------------------------~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~ 236 (400)
T PF03825_consen 188 A-------------------------------KESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQE 236 (400)
T ss_pred c-------------------------------CCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000011112234578999988877776666655555555445555666
Q ss_pred cCC-ceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc
Q psy3965 390 IGG-DVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAF 468 (535)
Q Consensus 390 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~ 468 (535)
.++ +......+.. +..+.|++.-+..+++.+|+|.|+++.++.+..++=..++...
T Consensus 237 ~gg~~~~~~g~~~~-----------------------l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~ 293 (400)
T PF03825_consen 237 LGGYSGSTIGILWA-----------------------LGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF 293 (400)
T ss_pred cccchhhHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 553 1111111101 1227899999999999999999999999999999888888877
Q ss_pred CCChHHHHHHHH----HHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHH-HhHHHHHHHHHHhhhh
Q psy3965 469 PQGSWMTISLAM----IGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVP-AGVALILIPYLWDMVN 532 (535)
Q Consensus 469 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~ig~~i~P~i~~l~~ 532 (535)
.++.+....... +-+...+..+.....|+.+..|++.|+++.++.+.. ..+|..++.++.+...
T Consensus 294 ~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 294 SDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred cCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444433333333 466777777788889999999999999999998776 4588888888877543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=145.49 Aligned_cols=320 Identities=12% Similarity=0.002 Sum_probs=206.6
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHH-HHHHHHHHhhchhhcc--chHHHHHHHHHHHhhhhhhhHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALM-GSLVCQLVLGAGVAAS--PWFEGYLVLRAMLGFVCVSIVFSG 235 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~-~~~~~~~i~~~~~~~~--~s~~~l~~~r~l~G~~~~~~~~~~ 235 (535)
++..++..+-.++..|+.|. ++|+-|+||.++ +...+..+++.+..+. .+++...+.-++.-++.+......
T Consensus 73 ~~~~sis~l~~all~P~lGa-----~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfy 147 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGA-----IADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFY 147 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888999999 999999665555 4555555666666663 345555666666677888888888
Q ss_pred HhhhcccccCcch--------------------------hhhhhhhhhhhhhHHHHHHHHHhhh----c-------chhH
Q psy3965 236 FVLCMEIVGGKWL--------------------------TIAGISYLFPVPLGYIAISGIAYYI----H-------SWRI 278 (535)
Q Consensus 236 ~~~i~e~~~~~~r--------------------------~~~~~~~~~~~~lG~~i~~~l~~~~----~-------~Wr~ 278 (535)
.+++.|..+++++ ++.++.-.....+|.++.-++...+ . +-|.
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~ 227 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV 227 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence 9999999998888 8888877776677777666555443 1 2477
Q ss_pred HHHHHHHHHHH-HHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhc
Q psy3965 279 LQWVITAPTII-FLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLW 357 (535)
Q Consensus 279 ~~~~~~~~~l~-~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 357 (535)
.+.+.++--++ .+...+++||.|+.-..+....-.+...+++ ..+++++.
T Consensus 228 ~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l-----------------------------~~t~k~~~ 278 (477)
T PF11700_consen 228 AFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL-----------------------------WRTFKEIR 278 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH-----------------------------HHHHHHHH
Confidence 77776665444 4555677888764200000000001111111 12334444
Q ss_pred cCchHHHHHHHHHHHHh-hhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHH
Q psy3965 358 RTPLMRLISCVQYVVWF-SVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIA 436 (535)
Q Consensus 358 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (535)
|.|.+.+.++..++..- .+.+...+..+....++.+..... ...++..+.+++|.+
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~-----------------------~~~l~~~i~a~~Ga~ 335 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLI-----------------------VFGLVVQIVAIIGAL 335 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH-----------------------HHHHHHHHHHHHHHH
Confidence 55555544443332111 122222222222223332211100 011122378889999
Q ss_pred HHHHHHhhcCCh--hHHHHHHHHHHHHHHHHHh-------cCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhh
Q psy3965 437 MSILILLKMGRR--RPLCLTTMAAGVACLVTLA-------FPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRN 507 (535)
Q Consensus 437 ~~~~l~dr~grr--~~l~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 507 (535)
+.+++.||+|.| +++..+.++..+..+...+ ..+..+...++.++.++..+..++..-++.+|+.|++..+
T Consensus 336 ~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~ 415 (477)
T PF11700_consen 336 LFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREA 415 (477)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhh
Confidence 999999999988 7777666655443333322 1345567788888889999999999999999999999999
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhhhhcC
Q psy3965 508 LGVGASSVPAGVALILIPYLWDMVNSFT 535 (535)
Q Consensus 508 ~~~g~~~~~~~ig~~i~P~i~~l~~~~~ 535 (535)
..+|+..+.++..+++||++.++..+.|
T Consensus 416 efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 416 EFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999877653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=5e-14 Score=137.37 Aligned_cols=261 Identities=10% Similarity=-0.021 Sum_probs=164.7
Q ss_pred hccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---------------
Q psy3965 209 AASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI--------------- 273 (535)
Q Consensus 209 ~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~--------------- 273 (535)
+...+|+.+++.-|+.|.|.+...+....++.+..+++++++.+++.+..+++|.+++|.++..+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 35578999999999999999999999999999999999999999999999999999999988743
Q ss_pred ----cchhHHHHHHHHHHHHHHHHhhh--cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhcc
Q psy3965 274 ----HSWRILQWVITAPTIIFLILWWC--IPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDS 347 (535)
Q Consensus 274 ----~~Wr~~~~~~~~~~l~~~~~~~~--lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (535)
.+||+++++.+...++..+.+.+ +||... ++.+ ...+ +
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~--------~~~~------------------------~~~~--~-- 128 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE--------ADVA------------------------RVSS--G-- 128 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc--------cccc------------------------cccc--c--
Confidence 26889988766554444443333 344210 0000 0000 0
Q ss_pred CCcccchhhccCchHHHHHHHHHHHHhh-hHHhhhhhhhccC--ccCCceeeeeeEEccccCccccccccccccccCcCC
Q psy3965 348 GKKVEVLDLWRTPLMRLISCVQYVVWFS-VYLVYYGLVLNLS--NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTS 424 (535)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (535)
+....++++++|..+...+..++.... .....+...+..+ .++.+. ...+....
T Consensus 129 -~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~-------------~~a~~~~s--------- 185 (310)
T TIGR01272 129 -DTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPE-------------DQAAHFTA--------- 185 (310)
T ss_pred -cccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCH-------------HHHHHHHH---------
Confidence 000112345555544433322221111 1111122222111 111111 11111111
Q ss_pred ccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchh
Q psy3965 425 CVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTK 504 (535)
Q Consensus 425 ~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 504 (535)
....+.++|+++.+++.||+|+|+.+.++..+..++.++....+ ... .....++.+++.+..+|...+...+.+|++
T Consensus 186 -~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~-~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~ 262 (310)
T TIGR01272 186 -YTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTH-GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH 262 (310)
T ss_pred -HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC-CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 11267789999999999999999988887777776665554433 232 223444667888889999999999988865
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 505 MRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 505 ~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
.+++.++. .++.+|+++.|.+.+...|
T Consensus 263 -~~~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 263 -TSQGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred -hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 45666764 6778999999998776543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-13 Score=140.96 Aligned_cols=306 Identities=9% Similarity=0.064 Sum_probs=179.7
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccccc----CchhhH-HHHHHHHHHhhchhh-----ccc--hHHHHHHHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF----GRKRAL-MGSLVCQLVLGAGVA-----ASP--WFEGYLVLRAMLGF 226 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~----Grr~~l-~~~~~~~~i~~~~~~-----~~~--s~~~l~~~r~l~G~ 226 (535)
|.+.+...+..++..++.|. ++||. ||||.+ +.+.+...+..++.. +++ ....+++..++.++
T Consensus 47 g~~~~~~~~~~~~~~~~~G~-----l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (448)
T PRK09848 47 GTMLLLVRVFDAFADVFAGR-----VVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGL 121 (448)
T ss_pred HHHHHHHHHHHHHhhhhhee-----eeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHH
Confidence 77788889999999999999 99986 777655 455444444333321 122 22334555667788
Q ss_pred hhhhhHHHHHhhhccccc-Ccchhhhhhhhhhhhh-----hHHHHHHHHHhhhc-----chhHHHHHHHHHHHH-HHHHh
Q psy3965 227 VCVSIVFSGFVLCMEIVG-GKWLTIAGISYLFPVP-----LGYIAISGIAYYIH-----SWRILQWVITAPTII-FLILW 294 (535)
Q Consensus 227 ~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~-----lG~~i~~~l~~~~~-----~Wr~~~~~~~~~~l~-~~~~~ 294 (535)
+.+...+...++..|... +++|.+..++-..+.+ +|..++|.++.... +|.....+.++.+++ .++..
T Consensus 122 ~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~ 201 (448)
T PRK09848 122 CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICF 201 (448)
T ss_pred HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777777775 4678877666554333 44555666554432 122222222222222 22223
Q ss_pred hhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHh
Q psy3965 295 WCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWF 374 (535)
Q Consensus 295 ~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 374 (535)
...||++.. +.++...+..++.++++|.++...+..++.+.
T Consensus 202 ~~~~e~~~~---------------------------------------~~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~ 242 (448)
T PRK09848 202 KSTRENVVR---------------------------------------IVAQPSLKISLQTLKRNRPLFMLCIGALCVLI 242 (448)
T ss_pred cCcEeccCC---------------------------------------CccCCCHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 334554210 00000112235678888888776665554444
Q ss_pred hhHHhhhhhhhccCc-cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHH
Q psy3965 375 SVYLVYYGLVLNLSN-IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCL 453 (535)
Q Consensus 375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~ 453 (535)
..........++.+. ++.+...... . .....++.+++.++.+++.||+|+|+.+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~g~~~~~~~~-------------~----------~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~ 299 (448)
T PRK09848 243 STFAVSASSLFYVRYVLNDTGLFTVL-------------V----------LVQNLVGTVASAPLVPGMVARIGKKNTFLI 299 (448)
T ss_pred HHHHHhhhheeeEeeecCChHHHHHH-------------H----------HHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 333222222222221 1111000000 0 000014456677888999999999999999
Q ss_pred HHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchh-------hhhhHHHHHHHHHhHHHHHHH
Q psy3965 454 TTMAAGVACLVTLAFPQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTK-------MRNLGVGASSVPAGVALILIP 525 (535)
Q Consensus 454 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~ig~~i~P 525 (535)
+.++.+++.+.+.+.+. ..+......++.+++.+...+...++.+|..|.+ .+|...|+.++...+|..+++
T Consensus 300 g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~ 379 (448)
T PRK09848 300 GALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGG 379 (448)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHH
Confidence 98887777766665543 3344444455667777777788888888887653 358889999999999999998
Q ss_pred HHHhhh
Q psy3965 526 YLWDMV 531 (535)
Q Consensus 526 ~i~~l~ 531 (535)
.+.+..
T Consensus 380 ~i~g~~ 385 (448)
T PRK09848 380 SIPAFI 385 (448)
T ss_pred HHHHHH
Confidence 887643
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-13 Score=138.25 Aligned_cols=306 Identities=10% Similarity=0.029 Sum_probs=174.3
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccc----cCchhh-HHHHHHHHHHhhchhhccch------HHHHHHHHHHHhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSR----FGRKRA-LMGSLVCQLVLGAGVAASPW------FEGYLVLRAMLGFV 227 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr----~Grr~~-l~~~~~~~~i~~~~~~~~~s------~~~l~~~r~l~G~~ 227 (535)
|.+..+.-+--++.-|+.|. ++|| +||||. ++++.+..+++.+++...|+ +..+.+.-++..++
T Consensus 48 g~i~~~~ri~Dai~Dp~~G~-----~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~ 122 (460)
T PRK11462 48 GTMFLVARALDAISDPCMGL-----LADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLL 122 (460)
T ss_pred HHHHHHHHHHHHHHhhhhee-----hhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHH
Confidence 33334444445677889999 9995 798655 45576777777666654443 44566667777888
Q ss_pred hhhhHHHHHhhhccccc-CcchhhhhhhhhhhhhhHHHHHHHHHhhh----------cchhHHHHHHHHHHHHHHHH-hh
Q psy3965 228 CVSIVFSGFVLCMEIVG-GKWLTIAGISYLFPVPLGYIAISGIAYYI----------HSWRILQWVITAPTIIFLIL-WW 295 (535)
Q Consensus 228 ~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----------~~Wr~~~~~~~~~~l~~~~~-~~ 295 (535)
.......-.++..|..+ +++|++..++...+..+|..+++.+...+ .+|+....+.+++.++.... ++
T Consensus 123 ~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 123 YTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888899999997 78999999999988888877765553321 15777666666665554433 33
Q ss_pred hcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhh
Q psy3965 296 CIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFS 375 (535)
Q Consensus 296 ~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 375 (535)
..+|.++- + +++.+.+..++.+++++.++.......+.+..
T Consensus 203 ~~kE~~~~-----~----------------------------------~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~ 243 (460)
T PRK11462 203 TTKERVEA-----P----------------------------------PTTTSMREDLRDIWQNDQWRIVGLLTIFNILA 243 (460)
T ss_pred cceeccCC-----C----------------------------------ccCCCHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 34443210 0 00000112345667777776554443333332
Q ss_pred hHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHH
Q psy3965 376 VYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTT 455 (535)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~ 455 (535)
.....-...++.....++......+ ....++..+++.++++++.||+++|+....+.
T Consensus 244 ~~~~~~~~~y~~~y~~g~~~~~~~~-----------------------l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~ 300 (460)
T PRK11462 244 VCVRGGAMMYYVTWILGTPEVFVAF-----------------------LTTYCVGNLIGSALAKPLTDWKCKVTIFWWTN 300 (460)
T ss_pred HHHHHhHhhhhhhhhcCChHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 2211111111111111110000000 00112566778889999999999998876555
Q ss_pred HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhhhhhcccccc-----hhhh--hhHHHHHHHHHhHHHHHHHHH
Q psy3965 456 MAAGVACLVTLAFPQG-SWMTISLAMIGKFAISSSNVVMPVYTAELFP-----TKMR--NLGVGASSVPAGVALILIPYL 527 (535)
Q Consensus 456 ~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r--~~~~g~~~~~~~ig~~i~P~i 527 (535)
.+..+..+++.+.+.. .+...+..++.+++.+...+..+.+.+|..+ +..| |...+..+....+|..+++.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i 380 (460)
T PRK11462 301 ALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGAL 380 (460)
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 5444433344343332 2223333344455555555555666666654 2234 444566667888888888877
Q ss_pred Hhhh
Q psy3965 528 WDMV 531 (535)
Q Consensus 528 ~~l~ 531 (535)
.+..
T Consensus 381 ~g~i 384 (460)
T PRK11462 381 IGWM 384 (460)
T ss_pred HHHH
Confidence 6643
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-13 Score=136.91 Aligned_cols=128 Identities=13% Similarity=-0.077 Sum_probs=100.2
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccccc-CchhhHHHHHHHHHHhhchhhccc-hHHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF-GRKRALMGSLVCQLVLGAGVAASP-WFEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~~-s~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
+.+.+.+.....++.+++|+ ++||+ ||||+++++.++..++.++.++.+ +...+.++..+.++|.|...+...
T Consensus 48 ~~i~~~~~~~~~l~~ligG~-----LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~ 122 (493)
T PRK15462 48 YELFSAYCSLVYVTPILGGF-----LADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVS 122 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHH
Confidence 56677888888999999999 99999 999999999999999987776543 223344444445556666667778
Q ss_pred hhhcccccCc--chhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHH
Q psy3965 237 VLCMEIVGGK--WLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFL 291 (535)
Q Consensus 237 ~~i~e~~~~~--~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~ 291 (535)
+++.|.+|++ +|....++...+..+|..++|.+...+ .+||+.|.+.++..++..
T Consensus 123 alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 123 CLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred HHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence 8999999875 788889999999999999999998887 389999988765444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-13 Score=129.07 Aligned_cols=317 Identities=10% Similarity=-0.002 Sum_probs=204.9
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchh-hHHHHHHHHHHhhchhhccch---HHHHHHHHHHHhhhhhhhHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKR-ALMGSLVCQLVLGAGVAASPW---FEGYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~-~l~~~~~~~~i~~~~~~~~~s---~~~l~~~r~l~G~~~~~~~~~ 234 (535)
+...++..+-.++-+++.|. ++|+.|+|| .+-+...+..++.++..++++ ++..++...+..++.......
T Consensus 61 gy~~aia~llia~LapiLG~-----iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 61 GYASAIAGLLIALLAPILGT-----IADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhh-----hhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 45566777777788889999 999999654 555566666666666777654 455666678888888888899
Q ss_pred HHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---------------------cchhHHHHHHHHHHHH-HHH
Q psy3965 235 GFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---------------------HSWRILQWVITAPTII-FLI 292 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---------------------~~Wr~~~~~~~~~~l~-~~~ 292 (535)
-.+++.+..++++-++.+++-.....+|.++.-++.... .+-|..+.+.++--++ .+.
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999998888887776555555555544332111 1356666666654444 344
Q ss_pred HhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHH
Q psy3965 293 LWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVV 372 (535)
Q Consensus 293 ~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (535)
+++.+|+.++- +.+. ++..... . ++-+.+++++.+++++...++.-++.
T Consensus 216 m~~~v~~~~~~---~~~~--~~~l~~g----------------~----------k~L~~t~k~i~~~~~i~~FLiA~~~~ 264 (438)
T COG2270 216 MILNVHDAEKI---SSPP--PTALRNG----------------F----------KELKSTFKEIRGRKNLVLFLIARFFY 264 (438)
T ss_pred HHhcccccccc---cccc--hHHHHHH----------------H----------HHHHHHHHHHhcccchHHHHHHHHHH
Confidence 45555554430 0000 0000000 0 01123455566666555444433321
Q ss_pred H-hhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHH
Q psy3965 373 W-FSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPL 451 (535)
Q Consensus 373 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l 451 (535)
- ..+.....+..+....++.+..... +..+..++..++|+++.|++.+|+|-|+++
T Consensus 265 ~DGv~til~~~~~fg~~~~gls~~~ll-----------------------l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl 321 (438)
T COG2270 265 IDGVNTILAMGGVFGAADLGLSSTELL-----------------------LIGIALSVVAALGAIIAGFLDERFGSKPVL 321 (438)
T ss_pred HhhHHHHHHHHHHHHHHHcCccHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 1 1122222222222222222111000 111122378889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 452 CLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 452 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
..+.++..+.++...+..... ....+.++.++..+..++..-++..++.|++.-+..+|+.+..++..++++|+++.+.
T Consensus 322 ~~~lvi~~~~~~~~~~~~~~~-~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~ 400 (438)
T COG2270 322 MIGLVILSIAALYLIFLEGEL-DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVI 400 (438)
T ss_pred hHHHHHHHHHHHHHHHccccH-HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHH
Confidence 999988888887776665443 5566667777888888899999999999999999999999999999999999999987
Q ss_pred hhcC
Q psy3965 532 NSFT 535 (535)
Q Consensus 532 ~~~~ 535 (535)
.+.|
T Consensus 401 t~iT 404 (438)
T COG2270 401 TQIT 404 (438)
T ss_pred HHHh
Confidence 6643
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.3e-13 Score=131.18 Aligned_cols=315 Identities=12% Similarity=0.092 Sum_probs=206.9
Q ss_pred cCCC--cchhHHHhhhh---hhcceeeccCCccccccc----cCc-hhhHHHHHHHHHHhhchhhccch------HHHHH
Q psy3965 155 EPES--HSYEMQSDFDV---QLSKLYTGQSNLDDTGSR----FGR-KRALMGSLVCQLVLGAGVAASPW------FEGYL 218 (535)
Q Consensus 155 ~~~l--~~~~s~~~~g~---~ig~~~~G~~~~~~l~Dr----~Gr-r~~l~~~~~~~~i~~~~~~~~~s------~~~l~ 218 (535)
.+++ +.+.+++.++- ++.-|+.|. ++|| +|| |+.++.+.+..++...++-.+++ ....+
T Consensus 42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~-----i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~ 116 (467)
T COG2211 42 VFGLSAALAGTIFLVARIIDAITDPIMGF-----IVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYAL 116 (467)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcchhee-----eecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHH
Confidence 3444 44445555444 457789999 9995 887 45666687888888888887774 44567
Q ss_pred HHHHHHhhhhhhhHHHHHhhhccccc-CcchhhhhhhhhhhhhhHHHHHHHHHhhh----------cchhHHHHHHHHHH
Q psy3965 219 VLRAMLGFVCVSIVFSGFVLCMEIVG-GKWLTIAGISYLFPVPLGYIAISGIAYYI----------HSWRILQWVITAPT 287 (535)
Q Consensus 219 ~~r~l~G~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----------~~Wr~~~~~~~~~~ 287 (535)
+...+.+++.......-.++..|+.+ +++|.+..++-+.+..+|.++...+...+ .+|+..-.+.++.+
T Consensus 117 vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~ 196 (467)
T COG2211 117 VTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIG 196 (467)
T ss_pred HHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence 77888999999998888999999986 78999999999998888876655443222 26777777777666
Q ss_pred HHHHHH-hhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHH
Q psy3965 288 IIFLIL-WWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLIS 366 (535)
Q Consensus 288 l~~~~~-~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 366 (535)
++.++. ++-+.|.+. ++ ...++..+.+.+.++..+++|+.++...
T Consensus 197 ~i~~l~~~~~v~ER~~---------~~-------------------------~~~~~~~~~~~~~~~~~~~~Nrp~~~~l 242 (467)
T COG2211 197 VILLLFCFFNVKERVV---------ET-------------------------QPTKTGVKLKLKDSFLLIFKNRPLLLLL 242 (467)
T ss_pred HHHHHHHHHHhhcccC---------cc-------------------------ccCcccccccHHHHHHHHHccchHHHHH
Confidence 664443 444555432 00 0000001111122344678888888777
Q ss_pred HHHHHHHhhhHHhhhhhhhccCcc-CCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhc
Q psy3965 367 CVQYVVWFSVYLVYYGLVLNLSNI-GGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM 445 (535)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~ 445 (535)
+...+.+....+......++.+.. +.+........ .......+++.++...+.+|+
T Consensus 243 ~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~-----------------------~~~~~~~l~~~~~~p~L~~~~ 299 (467)
T COG2211 243 LMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLL-----------------------LASGAGLLIGLILWPRLVKKF 299 (467)
T ss_pred HHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHH-----------------------HHHHHHHHHHHHhHHHHHHHh
Confidence 755555444333222222222211 11110000000 011144555678889999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhhhhhcccccc-----h--hhhhhHHHHHHHHH
Q psy3965 446 GRRRPLCLTTMAAGVACLVTLAFPQG-SWMTISLAMIGKFAISSSNVVMPVYTAELFP-----T--KMRNLGVGASSVPA 517 (535)
Q Consensus 446 grr~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~--~~r~~~~g~~~~~~ 517 (535)
|+|++..++.++..++.+++.+.+.+ .++.++..++.+++.+...++.+++.+|... + +.-|...|...++.
T Consensus 300 gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~ 379 (467)
T COG2211 300 GKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFR 379 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHH
Confidence 99999999999999999988888744 4555666678888999999999999999854 2 23366778888999
Q ss_pred hHHHHHHHHHHhhh
Q psy3965 518 GVALILIPYLWDMV 531 (535)
Q Consensus 518 ~ig~~i~P~i~~l~ 531 (535)
.+|.+++..+.++.
T Consensus 380 K~g~ala~~~~g~~ 393 (467)
T COG2211 380 KLGLALAGFIPGWI 393 (467)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888777653
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=143.16 Aligned_cols=157 Identities=15% Similarity=0.067 Sum_probs=119.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhch---hhccchHHHHHHHHHHHhhhhhhhHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAG---VAASPWFEGYLVLRAMLGFVCVSIVFSG 235 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~---~~~~~s~~~l~~~r~l~G~~~~~~~~~~ 235 (535)
++..+...++..++.++.|+ ++||+|||++++.+.++..++.+. ...+++...++++|++.|++.+......
T Consensus 289 ~~~~~~~~~~~~~~~~~~g~-----l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 363 (490)
T PRK10642 289 VLIIIAIMIGMLFVQPVMGL-----LSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVM 363 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888899999999 999999999988877654433322 2334567888899999999887777778
Q ss_pred HhhhcccccCcchhhhhhh-hhhhhhhHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHhhhcccchhHHHhc---
Q psy3965 236 FVLCMEIVGGKWLTIAGIS-YLFPVPLGYIAISGIAYYI----HSWRILQWVITAPTIIFLILWWCIPESPRWLLTM--- 307 (535)
Q Consensus 236 ~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~i~~~l~~~~----~~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~--- 307 (535)
..++.|.+|++.|+...++ ++.+...| .++|.+...+ .+|+..+++..+++++..+..+++||+|+|+..+
T Consensus 364 ~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~ 442 (490)
T PRK10642 364 ASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATP 442 (490)
T ss_pred HHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccc
Confidence 8888999999999998886 55554444 4555544433 3578777776677777666667789999998865
Q ss_pred --CCHHHHHHHHHHHH
Q psy3965 308 --GKTEEAMEVLKDAA 321 (535)
Q Consensus 308 --~~~~~a~~~l~~~~ 321 (535)
+|.+||++.+++++
T Consensus 443 ~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 443 AASDIQEAKEILVEHY 458 (490)
T ss_pred cccchhhHHHHhhccc
Confidence 99999999998885
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=118.59 Aligned_cols=321 Identities=11% Similarity=0.002 Sum_probs=181.3
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccc-cCchhhHHHHHHHHHHhhchhh---ccchHHHHHHHHHHHhhhhhhhHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSR-FGRKRALMGSLVCQLVLGAGVA---ASPWFEGYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr-~Grr~~l~~~~~~~~i~~~~~~---~~~s~~~l~~~r~l~G~~~~~~~~~ 234 (535)
.++-+.|..-..+-++++|+ +.|| +|-|..-++-+....++.++.+ .++.+|++.++||+.|+|.-....+
T Consensus 82 tLlYsvYSwPNvVlcffgGf-----lidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVa 156 (459)
T KOG4686|consen 82 TLLYSVYSWPNVVLCFFGGF-----LIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVA 156 (459)
T ss_pred eeeeeeccCCCEEEeeecce-----eehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhh
Confidence 67778999999999999999 9996 7887766666666667766654 4689999999999999998888888
Q ss_pred HHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHhhhcccchhHHHhcCC-H
Q psy3965 235 GFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVIT---APTIIFLILWWCIPESPRWLLTMGK-T 310 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~~Wr~~~~~~~---~~~l~~~~~~~~lpesp~~l~~~~~-~ 310 (535)
-..|+.-|+..|+.+.++++.....-+|..+--.+..++.+.-.-++-.. .+++.+.+-...+..|-.-....+- .
T Consensus 157 QN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D 236 (459)
T KOG4686|consen 157 QNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSD 236 (459)
T ss_pred hcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88999999999999999888877666665543332222211111111000 0000000000000000000011111 1
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhh--hhhccC
Q psy3965 311 EEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYG--LVLNLS 388 (535)
Q Consensus 311 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 388 (535)
++|++.+.+ .++.. . +..+-+-..-++ |.++...++++ .+....+.+++ ..++..
T Consensus 237 ~rAerilh~---e~g~~----------------G--e~pkLtdv~~f~-ppfw~~~iicv-~yyva~fPFi~lg~~fF~~ 293 (459)
T KOG4686|consen 237 DRAERILHL---EEGFL----------------G--EEPKLTDVNTFY-PPFWVLVIICV-LYYVAWFPFITLGPMFFQK 293 (459)
T ss_pred hHHHHHHhh---hcCcc----------------c--CCcccccccccC-ccHHHHHHHHH-HHHHHHHHHhhhhHHHHHH
Confidence 122222111 01000 0 001111111233 33444444333 23233333332 233333
Q ss_pred ccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHH-HHHHh
Q psy3965 389 NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVAC-LVTLA 467 (535)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~-~~~~~ 467 (535)
.++.+. ...+......+ ....+...+.|.++||.|++...+.+..+..+.. ..+.+
T Consensus 294 rfGlS~-------------~~a~~i~s~vy----------~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F 350 (459)
T KOG4686|consen 294 RFGLSA-------------VSAGNILSTVY----------GISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF 350 (459)
T ss_pred hhCCCh-------------hhccchhhhhh----------hhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh
Confidence 333322 22222222222 5566778888999999999987776655444332 23333
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 468 FPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
..-+++ ..+.+.+...+..-...|..++.+.|.+.-|++.|.+..+.++|-.+.|+++++..+
T Consensus 351 t~lsPy---~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 351 TFLSPY---TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred hhccHH---HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 322232 223333444444444567778888899999999999999999999999999986543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-13 Score=114.43 Aligned_cols=135 Identities=19% Similarity=0.179 Sum_probs=118.1
Q ss_pred chhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhh
Q psy3965 160 SYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLC 239 (535)
Q Consensus 160 ~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i 239 (535)
+..+.+.++..+++++.|+ +.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++
T Consensus 2 ~~~~~~~~~~~~~~~~~g~-----~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (141)
T TIGR00880 2 LLLAGYALGQLIYSPLSGL-----LTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALI 76 (141)
T ss_pred EEEEeehhHHHHHHhhHHH-----HHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4456778899999999999 99999999999999999999999888899999999999999999999999999999
Q ss_pred cccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 240 MEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 240 ~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
.|..|+++|++..++.+....+|..+++.++..+ .+|++.+++.++..++..+. .+..||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999888776 37999988877766664443 444455
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=127.01 Aligned_cols=316 Identities=14% Similarity=0.093 Sum_probs=178.0
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHH--hh-chhhcc----chH-HHHHHHHHHHhhhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLV--LG-AGVAAS----PWF-EGYLVLRAMLGFVCVS 230 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i--~~-~~~~~~----~s~-~~l~~~r~l~G~~~~~ 230 (535)
|.+.++..+..++.+++.|. ++||+|.||-++....+..+ +. +...+. .|+ ...+++-...|++..+
T Consensus 46 G~i~s~~~~~~l~~qp~~G~-----i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~ 120 (412)
T PF01306_consen 46 GIIFSAGSLFALLAQPVYGF-----ISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNA 120 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHH-----HHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHhHHH-----hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 78889999999999999999 99999977665544333222 22 121222 232 2334444555666666
Q ss_pred hHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHhh-hcccchhHHHhc
Q psy3965 231 IVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH--SWRILQWVITAPTIIFLILWW-CIPESPRWLLTM 307 (535)
Q Consensus 231 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--~Wr~~~~~~~~~~l~~~~~~~-~lpesp~~l~~~ 307 (535)
..++.-+++.++... .+.=.|-.-+..++|.+++..+++.+- +-+..|++....+++..++.+ .-|+.++.....
T Consensus 121 ~~~~~Ea~~er~sr~--~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~ 198 (412)
T PF01306_consen 121 GVPLSEAYAERVSRR--NGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA 198 (412)
T ss_dssp HHHHHHHHHHHHHHH--HSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS
T ss_pred cchHHHHHHHHHHHH--hcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh
Confidence 777777776665532 222233334445566666666555543 345567776665555444433 333332210000
Q ss_pred CCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhcc
Q psy3965 308 GKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNL 387 (535)
Q Consensus 308 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (535)
+ ...+++++.+.+...+++|+|+++...+.....+............+.
T Consensus 199 ~-------------------------------~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~ 247 (412)
T PF01306_consen 199 D-------------------------------ALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYF 247 (412)
T ss_dssp T-------------------------------TSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-------------------------------ccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000111122356788999988777665554433222211111111
Q ss_pred CccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy3965 388 SNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLA 467 (535)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~ 467 (535)
..+..+........| .. ..+.-+.|++...++.++.+|+|.|+.++++..++.+=.+...+
T Consensus 248 ~~~f~~~~~g~~~~G---------~l----------~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~ 308 (412)
T PF01306_consen 248 ASFFQSAGQGNQMYG---------YL----------WSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF 308 (412)
T ss_dssp HHTSSSHHHHHHHHH---------HH----------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcccccChhHHh---------HH----------HHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh
Confidence 111111100000011 00 00111778899999999999999999999999998888888777
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHH-HHHHhHHHHHHHHHHhhhh
Q psy3965 468 FPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGAS-SVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~ig~~i~P~i~~l~~ 532 (535)
.++ .+.....-.+-++-.........-|+.+.+|++..++...+. +....+|.++.+.+.+...
T Consensus 309 ~~~-~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly 373 (412)
T PF01306_consen 309 ATN-PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY 373 (412)
T ss_dssp --S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred hcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 654 446666667777777777777788999999999999998886 4666788887777766543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.4e-12 Score=134.12 Aligned_cols=138 Identities=13% Similarity=-0.036 Sum_probs=119.9
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
.+...+..++.++|.++.|+ ++||+|||+++++++++.+++.++.+++++...+++++++.|++.++..++..++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~-----L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~ 672 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSAL-----LMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVL 672 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777999999999999 9999999999999999999999999999988889999999999989999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHhhhcccch
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH--SWRILQWVITAPTIIFLILWWCIPESP 301 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--~Wr~~~~~~~~~~l~~~~~~~~lpesp 301 (535)
++|++|.+.|++++++......+|.+++|.++..+. +...++++.++..++..++.+++||+.
T Consensus 673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999986552 345567777776666666666779874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-10 Score=110.00 Aligned_cols=311 Identities=13% Similarity=0.110 Sum_probs=184.4
Q ss_pred eeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccC-----chhhHH-HHHHHHHHhhchhhcc-----c---
Q psy3965 152 IISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFG-----RKRALM-GSLVCQLVLGAGVAAS-----P--- 212 (535)
Q Consensus 152 i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~G-----rr~~l~-~~~~~~~i~~~~~~~~-----~--- 212 (535)
++.|+++ +...++..+-. ...+.+|+ .||+.+ ||..++ .|.++...+..+.+++ .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~-----~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~ 79 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGH-----RSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQ 79 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH-HHHHHhcc-----ccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 4556776 33334443333 34778899 999988 775555 4666666655555432 2
Q ss_pred ----hH----HHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-cch---hHHH
Q psy3965 213 ----WF----EGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-HSW---RILQ 280 (535)
Q Consensus 213 ----s~----~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-~~W---r~~~ 280 (535)
+. ....+...+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++..+.+.+ .++ |...
T Consensus 80 ~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~ 159 (403)
T PF03209_consen 80 QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQ 159 (403)
T ss_pred ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence 22 24555678899999999999999999999999999999999999999999998876654 332 3333
Q ss_pred HHHHHH--HHHHHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhcc
Q psy3965 281 WVITAP--TIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWR 358 (535)
Q Consensus 281 ~~~~~~--~l~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 358 (535)
.+..+. .+.+.+...+=.|.++- +. ...+++++..-...+++++.
T Consensus 160 v~~~~a~i~~~l~~ia~wg~E~r~~-------~~--------------------------~~~~~~~~~~f~~a~~~~~~ 206 (403)
T PF03209_consen 160 VIQGVALIALLLNLIALWGQEPRRS-------RR--------------------------AAAAERPRPPFREAWRQVWA 206 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCc-------cc--------------------------ccCCCCCCccHHHHHHHHHh
Confidence 332222 22222222222232110 00 00001111122344667777
Q ss_pred CchHHHHHHHHHHHHhhhHHhhhhhhhccCccCCcee-----eeeeEEccccCccccccccccccccCcCCccCceeehh
Q psy3965 359 TPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVY-----VNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIP 433 (535)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (535)
+|+.++.+...++..+ .++..-..++.++++.+ .+..+.+ .-+.+.++
T Consensus 207 ~~~a~~f~~fl~l~t~----a~~~QD~iLEPygg~Vfgmsv~eTT~Lta-----------------------~~~~G~L~ 259 (403)
T PF03209_consen 207 SPQARRFFVFLFLGTL----AFFMQDVILEPYGGEVFGMSVGETTRLTA-----------------------FWGGGTLL 259 (403)
T ss_pred CCChhHHHHHHHHHHH----HHHhhHHHcCCchhHHcCCCHHHHHHHHH-----------------------HHHHHHHH
Confidence 8887777665554332 22222233333333222 1111111 11256677
Q ss_pred hHHHHHHHHh-hcCChhHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHH
Q psy3965 434 AIAMSILILL-KMGRRRPLCLTTMAAGVACLVTLAF--PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGV 510 (535)
Q Consensus 434 ~~~~~~~l~d-r~grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 510 (535)
+....+++.. |.++++...++..++.+++.++... ..+.+......++.+++.+...........++.+++..|+.+
T Consensus 260 G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~m 339 (403)
T PF03209_consen 260 GMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFM 339 (403)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHH
Confidence 7777787766 6777777777777777666555443 234556666677777888777666667777888888889999
Q ss_pred HHHHHHHhHHHHHHHHHH
Q psy3965 511 GASSVPAGVALILIPYLW 528 (535)
Q Consensus 511 g~~~~~~~ig~~i~P~i~ 528 (535)
|.......++..++-.+.
T Consensus 340 G~WGaaQA~A~Glg~~~G 357 (403)
T PF03209_consen 340 GAWGAAQAIARGLGTFLG 357 (403)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 887666555444444433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-12 Score=135.57 Aligned_cols=351 Identities=14% Similarity=0.052 Sum_probs=3.0
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc-----------
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP----------- 212 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~----------- 212 (535)
.++|++.|++ |++.+.+-++.++..++..+ +.+|-.|-|.+-.+.++.++++++.++-+
T Consensus 26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy-----~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~ 100 (539)
T PF03137_consen 26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSY-----FGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEA 100 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccc
Confidence 6789999998 89999999999999999999 99998787888889999999988876310
Q ss_pred ---------------------------------------hHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhh
Q psy3965 213 ---------------------------------------WFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGI 253 (535)
Q Consensus 213 ---------------------------------------s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~ 253 (535)
-+..++++.++.|+|....++...+|+-|.+++++-+...+
T Consensus 101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiG 180 (539)
T PF03137_consen 101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIG 180 (539)
T ss_dssp ---------------------------------------------------SSS--------------------------
T ss_pred cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchh
Confidence 13578889999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhhhc-------------------------chhHHHHHHHHHHHHHHHHhhhcccchhHHHhcC
Q psy3965 254 SYLFPVPLGYIAISGIAYYIH-------------------------SWRILQWVITAPTIIFLILWWCIPESPRWLLTMG 308 (535)
Q Consensus 254 ~~~~~~~lG~~i~~~l~~~~~-------------------------~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~ 308 (535)
++.....+|.++|.++++... .|..-|++.++..++..+.++++|+.-.-. ++
T Consensus 181 i~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~--~~ 258 (539)
T PF03137_consen 181 ILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT--SE 258 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc--cc
Confidence 999999999998888876540 144445555555555555555566542110 00
Q ss_pred CHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhh-HHhhhhhhhcc
Q psy3965 309 KTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSV-YLVYYGLVLNL 387 (535)
Q Consensus 309 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 387 (535)
..++.+...++..+.+.++ . +..+......+..++-....+.+++||.+....+......+.. .+..|..-+.-
T Consensus 259 ~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE 333 (539)
T PF03137_consen 259 RQEEKESSERKEEDSDKDS-F----KDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLE 333 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhhhhcchhhhhhhc-c----cccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111100000000000000 0 0000000000111223455677888887665555444333322 22233333333
Q ss_pred CccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHH-
Q psy3965 388 SNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMG--RRRPLCLTTMAAGVACLV- 464 (535)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~g--rr~~l~~~~~~~~i~~~~- 464 (535)
.+++.+......+.| .+.-.+.++|.+++|++.+|++ .|..+....+...+..+.
T Consensus 334 ~QF~~sas~A~~l~G----------------------~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~ 391 (539)
T PF03137_consen 334 SQFGLSASQASLLTG----------------------IVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILY 391 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhCCCHHHHHHHHh----------------------hhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 344444433333333 1111456688899999999875 344333333333222222
Q ss_pred --HHhc------------CC----------------------------------C----hHHHHHHHHHHHHHHHHHhhh
Q psy3965 465 --TLAF------------PQ----------------------------------G----SWMTISLAMIGKFAISSSNVV 492 (535)
Q Consensus 465 --~~~~------------~~----------------------------------~----~~~~~~~~~~~~~~~~~~~~~ 492 (535)
..+. +. . ....++..++..+..+.....
T Consensus 392 ~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p 471 (539)
T PF03137_consen 392 SPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVP 471 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccc
Confidence 1111 00 0 011122222333333444444
Q ss_pred hhhhcccccchhhhhhHHHHHHHHHh-HHHHHHHHHHhhhhh
Q psy3965 493 MPVYTAELFPTKMRNLGVGASSVPAG-VALILIPYLWDMVNS 533 (535)
Q Consensus 493 ~~~~~~e~~p~~~r~~~~g~~~~~~~-ig~~i~P~i~~l~~~ 533 (535)
....+-..+|++.|+.|+|+..++.+ +|.+-+|++.+..-|
T Consensus 472 ~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD 513 (539)
T PF03137_consen 472 STLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID 513 (539)
T ss_dssp ------------------------------------------
T ss_pred hheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence 55666788999999999999998877 677889999887554
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-10 Score=110.15 Aligned_cols=311 Identities=12% Similarity=0.026 Sum_probs=192.9
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc------chHH--HHHHHHHHHhhhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS------PWFE--GYLVLRAMLGFVCVS 230 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~------~s~~--~l~~~r~l~G~~~~~ 230 (535)
-|...+|++.+....+++-+ +.|++|-|..++++..+.+++..+-..+ +.++ ....+..+.+.+.-.
T Consensus 82 ~wlsmIym~v~vp~gf~~mw-----~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~F 156 (480)
T KOG2563|consen 82 DWLSMIYMVVSVPFGFAAMW-----ILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPF 156 (480)
T ss_pred HHHHHHHHHHHHHHhhHHHH-----hhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhH
Confidence 57788999999999999999 9999999999999999999999987665 3445 677888888888777
Q ss_pred hHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---------chhH--HHHHHHHHHHHHHH-Hhhhcc
Q psy3965 231 IVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---------SWRI--LQWVITAPTIIFLI-LWWCIP 298 (535)
Q Consensus 231 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---------~Wr~--~~~~~~~~~l~~~~-~~~~lp 298 (535)
.......+..-|+++++|..+..+-.++..+|.+++.++...+- .|-. +|+.....+.+.+. ..+..+
T Consensus 157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~ 236 (480)
T KOG2563|consen 157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFT 236 (480)
T ss_pred hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777778888999999999998888888888888887776651 3544 34434444333332 233344
Q ss_pred cchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHH
Q psy3965 299 ESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYL 378 (535)
Q Consensus 299 esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (535)
+.|+. |+....... .+.+-..+.++.++++++....++... ...
T Consensus 237 ~~P~t-------------------------Pps~s~~~~-------~~~~f~~si~~~~~n~~F~il~~~ygi----~~g 280 (480)
T KOG2563|consen 237 KKPPT-------------------------PPSASQAAL-------QDASFPKSIKSCFKNRQFIILAICYGI----GLG 280 (480)
T ss_pred CCCCC-------------------------CCchhHhhh-------hcCcHHHHHHHHHcCccHHHHHHHHhh----hHH
Confidence 43321 000000000 011134467788888886655544433 223
Q ss_pred hhhhhhhccC-ccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChh-HHHHHHH
Q psy3965 379 VYYGLVLNLS-NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRR-PLCLTTM 456 (535)
Q Consensus 379 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~-~l~~~~~ 456 (535)
.++++...+. .+....|.+ ...| . ...+..++++++.+++|.+.||.+.-+ ...+...
T Consensus 281 ~F~~l~~~l~~~l~~sgY~~-~~aG---------~----------ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~ 340 (480)
T KOG2563|consen 281 LFNSLSTLLNLALCPSGYEG-VFAG---------Y----------IGALMIVAGMLGALASGIIADKTKKFKLTTLVLYL 340 (480)
T ss_pred HHHHHHHHhhhccccccCCc-cccc---------h----------hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 3333333222 221111211 2222 1 111222778899999999999987643 3333333
Q ss_pred HHHHH-HHHHHhc--CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 457 AAGVA-CLVTLAF--PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 457 ~~~i~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
...++ +.+.... ....+.+.....+.+++.....|+..-+..|..=+..-++..|+.++.+++.+++-.++.+.
T Consensus 341 ~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~ 417 (480)
T KOG2563|consen 341 FALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGI 417 (480)
T ss_pred HHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHH
Confidence 33333 2222222 22333444444444555555568777777876544555788999999988888777776654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-09 Score=103.35 Aligned_cols=130 Identities=14% Similarity=0.038 Sum_probs=107.8
Q ss_pred HHHhhhhhhcceeeccCCccccccc-cCchhhHHHHHHHHHHhhchhhccc--hHHHHHHHHHHHhhhhhhhHHHHHhhh
Q psy3965 163 MQSDFDVQLSKLYTGQSNLDDTGSR-FGRKRALMGSLVCQLVLGAGVAASP--WFEGYLVLRAMLGFVCVSIVFSGFVLC 239 (535)
Q Consensus 163 s~~~~g~~ig~~~~G~~~~~~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~--s~~~l~~~r~l~G~~~~~~~~~~~~~i 239 (535)
+.|..-.-+..+++|+ ++|| +|+|++++++.++..+|.++.+.+. +...+.++-.+.++|.|..-+...+++
T Consensus 68 ~~y~slVY~t~i~GG~-----laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~ll 142 (498)
T COG3104 68 SAYGSLVYLTPIIGGW-----LADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLL 142 (498)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHH
Confidence 4444444456778899 9999 6999999999999999999999984 788999999999999999999999999
Q ss_pred cccccCc--chhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHhhhc
Q psy3965 240 MEIVGGK--WLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILWWCI 297 (535)
Q Consensus 240 ~e~~~~~--~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~~~l 297 (535)
.|.+|++ +|-...+++.++.++|.+++|.+...+. +|...|...++-..+.++.++..
T Consensus 143 g~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 143 GELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred HHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999854 4667788899999999999999988874 89999988877666555544443
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-10 Score=116.99 Aligned_cols=138 Identities=17% Similarity=0.068 Sum_probs=112.2
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCc-hhhHHHHHHHHHHhhchh-hcc---c-hHHHHHHHHHHHhhhhhhhH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGR-KRALMGSLVCQLVLGAGV-AAS---P-WFEGYLVLRAMLGFVCVSIV 232 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Gr-r~~l~~~~~~~~i~~~~~-~~~---~-s~~~l~~~r~l~G~~~~~~~ 232 (535)
|++.++..+|.+++++.+|. .+.|.|. |+.++.+.++..+++++. +.. + ..+.++++|++.|+|. +..
T Consensus 74 G~viaa~slg~~i~~liF~~-----Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~ 147 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGI-----WSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNF 147 (488)
T ss_pred hHHHHHHHHHHHhcchhhcc-----cccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccH
Confidence 89999999999999999999 9999996 888999999999999887 332 3 6889999999999995 456
Q ss_pred HHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc-----c-----------hhHHHHHHHHHHHHH-HHHhh
Q psy3965 233 FSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH-----S-----------WRILQWVITAPTIIF-LILWW 295 (535)
Q Consensus 233 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~-----~-----------Wr~~~~~~~~~~l~~-~~~~~ 295 (535)
...-.|+++....+.|.++.+....+..+|.++||.++..+. | +...-++.++..++. +++.+
T Consensus 148 a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~ 227 (488)
T KOG2325|consen 148 AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF 227 (488)
T ss_pred HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence 777899999999999999999999988999999998876652 2 233556677776664 34456
Q ss_pred hcccchh
Q psy3965 296 CIPESPR 302 (535)
Q Consensus 296 ~lpesp~ 302 (535)
++.|.++
T Consensus 228 ~f~E~~~ 234 (488)
T KOG2325|consen 228 FFKEVYR 234 (488)
T ss_pred heeeccc
Confidence 6777654
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-09 Score=109.22 Aligned_cols=311 Identities=16% Similarity=0.202 Sum_probs=182.2
Q ss_pred HHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhh--hhhhHHHHHhhhcc
Q psy3965 164 QSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFV--CVSIVFSGFVLCME 241 (535)
Q Consensus 164 ~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~--~~~~~~~~~~~i~e 241 (535)
...+..++.++..|. ++||+|||..+.+.++...+..+...+.. +|.++ +.|+. .+.......++++|
T Consensus 70 ~~~~~~~i~s~~iG~-----lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGA-----LSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVAD 139 (463)
T ss_pred hhHHHHHHHHhhhHH-----hhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheee
Confidence 445667778888999 99999999999999999888888877766 33333 44432 35667778899999
Q ss_pred cccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHH-HHhhhcccchhHHHhcCCHHHHHHHH
Q psy3965 242 IVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFL-ILWWCIPESPRWLLTMGKTEEAMEVL 317 (535)
Q Consensus 242 ~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~-~~~~~lpesp~~l~~~~~~~~a~~~l 317 (535)
....++|....++....+..+..++|.++..+. +.-..+.+.++..++.. ...+++||+-.- +.+.+ +
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~-~---- 211 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD-A---- 211 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc-c----
Confidence 999999999999999999999999999988874 44456666666666644 446778987421 11100 0
Q ss_pred HHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCccCCce-ee
Q psy3965 318 KDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDV-YV 396 (535)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 396 (535)
...+. .+.. .........+....+...-|..+.+.....+ ... ...++.. ..
T Consensus 212 ----~~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~-~~~---------~~~~~~~~~~ 264 (463)
T KOG2816|consen 212 ----TLREL-TPGS------------LDSSHVADAFQSLTKVGPDRLLLLLLLVAFL-SSL---------PEAGGASDVL 264 (463)
T ss_pred ----ccccc-CCCc------------ccchhhhhhhhhhcccCCCccchHHHHHHHH-HHH---------HHhcCceeEE
Confidence 00000 0000 0000000011111110011111111111111 000 0000000 00
Q ss_pred -eeeEEccccCccccccccccccccCcCCccCceeehhhHHHHH-HHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHH
Q psy3965 397 -NTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSI-LILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWM 474 (535)
Q Consensus 397 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~ 474 (535)
...-.-.+++....+.... ..+....++.++.. .+...+|-|+....++..-.+..+.+.+..+ .|.
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~----------~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~-~w~ 333 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLS----------LVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE-TWM 333 (463)
T ss_pred EEEEeeecCcCHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc-chh
Confidence 1111111222222111111 11144455555554 6777888888888888888888877777644 344
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 475 TISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
......+..+ .....+...+..+-..+++.+|.+.++...+..+.++++|.+....
T Consensus 334 ~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 334 MFAAGVVVAL-AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hhHHHHHHHh-hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 4444444333 3344577788888889999999999999999999999999887643
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.5e-10 Score=113.48 Aligned_cols=137 Identities=15% Similarity=0.043 Sum_probs=114.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc----hHHHHHHHHHHHhhhhhhhHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP----WFEGYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~----s~~~l~~~r~l~G~~~~~~~~~ 234 (535)
+...++..++..++.++.|+ ++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+.
T Consensus 254 g~~~~~~~i~~i~~~~~~g~-----l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPF-----FLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888999999999 99999999999999999888876666532 3567788999999999998899
Q ss_pred HHhhhcccccCcchhhhhhhhh-hhhhhHHHHHHHHHhhhc---------chhHHHHHHHHHHHH-HHHHhhhcccc
Q psy3965 235 GFVLCMEIVGGKWLTIAGISYL-FPVPLGYIAISGIAYYIH---------SWRILQWVITAPTII-FLILWWCIPES 300 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~~~-~~~~lG~~i~~~l~~~~~---------~Wr~~~~~~~~~~l~-~~~~~~~lpes 300 (535)
...++.|.+|+++|+++.++.+ ...++|.+++|.+++.+. +|+..|.+.++..++ ..+..++++|+
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999997 678899999999887652 499999888777666 44456667776
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.1e-10 Score=114.06 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=114.2
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+++.++..++..++.++.|+ ++||+|||+.+..+.++.+++.++.+++++.+.+.+.+++.|++.+...+....+
T Consensus 265 g~~~~~~~~~~~~~~~~~g~-----l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 339 (420)
T PRK09528 265 GYLNSFQVFLEALIMFFAPF-----IINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKY 339 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888899999999 9999999999999999999988888899999999999999999988888888899
Q ss_pred hcccccCcchhhhhhh-hhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHH-Hhhhcccc
Q psy3965 239 CMEIVGGKWLTIAGIS-YLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLI-LWWCIPES 300 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~-~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~-~~~~lpes 300 (535)
+.|..|++.|+...+. .+....+|.++++.+.+.+. |||..|.+.++..++..+ .++.+++.
T Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 340 ITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999877654 56677889999888877763 899999987776665443 34444443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=110.86 Aligned_cols=136 Identities=15% Similarity=0.018 Sum_probs=115.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.+.++..++.++.|+ +.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~-----l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~ 326 (399)
T PRK05122 252 ALALTLFGVAFVGARLLFGN-----LINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVE 326 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45567788888999999999 9999999999999988888888888888898888999999999999888888888
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhccc
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIPE 299 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpe 299 (535)
+.|..|+++|+++.++++....+|..+++.+.+.+ .+|+..+++.++..++..+..+++++
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 327 AVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88999999999999999999999988877776655 38999999888777776655555544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-09 Score=108.98 Aligned_cols=135 Identities=15% Similarity=0.102 Sum_probs=108.1
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+...++.+++.++.|+ ++||+|||+.+..+.+...+......+.++.+.+++.|++.+++.+...+....+
T Consensus 255 g~~~~~~~~~~i~~~~~~G~-----l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~ 329 (393)
T PRK15011 255 GVMMGTAAGLEIPTMLIAGY-----FAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLY 329 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667778899999 9999999998888776666555555567788888899999999888877778888
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHhhhccc
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILWWCIPE 299 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~~~lpe 299 (535)
..|..|+ +|+++.++.+....+|..+++.+++.+. +|+..+++.+++.++..+..+++||
T Consensus 330 ~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 330 FQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8998875 5899999988888999999999887763 7999998888877777766666665
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.4e-09 Score=108.08 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=113.6
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+.+.+++.++..++.++.|+ ++||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+...++
T Consensus 261 g~~~~~~~l~~~~~~~~~g~-----l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (408)
T PRK09874 261 GMIASVPGVAALLSAPRLGK-----LGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTL 335 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 34455667788888889999 9999999999999998888888777888889999999999999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhh
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWW 295 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~ 295 (535)
+.+..|+++|++..++......+|..++|.+++.+ .+|+..|++.++..++..+..+
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 336 LVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876 3799999988887777555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-09 Score=106.51 Aligned_cols=131 Identities=16% Similarity=-0.009 Sum_probs=113.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.+.++..++.++.|+ +.||+|||+.+..+..+.+++.++..+.++.+.+.+.+++.|++.+...+...+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~-----l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 326 (392)
T PRK12382 252 GFTLTAFGGAFVLMRVLFGW-----MPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVE 326 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45556777888889999999 9999999999999999988888888888898888999999999999888888888
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHh
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILW 294 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~ 294 (535)
+.|..|+++|++..++.+....+|..++|.+.+.+. +|+..|.+.++..++..+..
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 327 VVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877763 89999998887766654443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-09 Score=105.31 Aligned_cols=133 Identities=18% Similarity=0.064 Sum_probs=121.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchh-hHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKR-ALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~-~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
++..+...++..++.++.|+ +.||+|||+ .+..+..+..++.++..+.++.+.+.+..++.|++.+...+....
T Consensus 214 ~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 288 (352)
T cd06174 214 GLLLSLFGLGGILGALLGGL-----LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT 288 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHH
Confidence 77788899999999999999 999999999 999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHhhh
Q psy3965 238 LCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILWWC 296 (535)
Q Consensus 238 ~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~~~ 296 (535)
++.|..|+++|++..++.+....+|..+++.+.+.+. +|+..+.+.++..++..+..++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999999887763 8999999988887776655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-08 Score=97.02 Aligned_cols=130 Identities=10% Similarity=0.024 Sum_probs=106.5
Q ss_pred hhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcch
Q psy3965 169 VQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWL 248 (535)
Q Consensus 169 ~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r 248 (535)
++...++... +.|..|.|++++++.+...+..++..+.++...+-+.-++-|++.+. ..+-++|+--..|+++-
T Consensus 54 yl~~l~~vfl-----ltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~y 127 (412)
T PF01770_consen 54 YLAFLLPVFL-----LTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHY 127 (412)
T ss_pred HHHHHHHHHH-----HHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHH
Confidence 3445566677 99999999999999999999999999999999999999999999655 77788999989999988
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhc-----chhHHHHHHHHHHHHHHHHhhhcccchhHH
Q psy3965 249 TIAGISYLFPVPLGYIAISGIAYYIH-----SWRILQWVITAPTIIFLILWWCIPESPRWL 304 (535)
Q Consensus 249 ~~~~~~~~~~~~lG~~i~~~l~~~~~-----~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l 304 (535)
-++.+......-+|..++.++|..+. +.+.+..+......+.++..+++|..++-+
T Consensus 128 q~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~ 188 (412)
T PF01770_consen 128 QKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSL 188 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 99999998888889888888887763 456666666655556666667788766533
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.6e-09 Score=105.94 Aligned_cols=134 Identities=16% Similarity=0.025 Sum_probs=111.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.+.++..++.++.|+ ++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.++..+...++
T Consensus 258 ~~~~~~~~~~~~~~~~~~g~-----l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 332 (406)
T PRK11551 258 GLVQIAFNIGGALGSLLIGA-----LMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYAL 332 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67778888999999999999 9999999999988877777777777778888888888899999988888999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc----chhHHHHHHHHHHHHHHHHhhhc
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH----SWRILQWVITAPTIIFLILWWCI 297 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----~Wr~~~~~~~~~~l~~~~~~~~l 297 (535)
+.|.+|+++|++..++.+....+|..++|.+++.+. +|...+++.....++..++.+.+
T Consensus 333 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 333 APLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887763 45666666555555544444444
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.5e-09 Score=108.05 Aligned_cols=148 Identities=17% Similarity=0.035 Sum_probs=124.2
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc------------
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS------------ 211 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~------------ 211 (535)
..+|.+.|++ |++.+.+-+|..+...+..+ .+-|.-|-+.+-+|+++.+++++++++-
T Consensus 120 IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsY-----fG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~ 194 (735)
T KOG3626|consen 120 ITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSY-----FGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELE 194 (735)
T ss_pred hhhhhhhcCCCCCcceeEeeecccchhhhhHhHHH-----hccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhh
Confidence 5677778887 88899999999999999999 9999999999999999999999888752
Q ss_pred --------c--------------------------------hHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhh
Q psy3965 212 --------P--------------------------------WFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIA 251 (535)
Q Consensus 212 --------~--------------------------------s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~ 251 (535)
+ -+..++++.++.|+|....++...+|+-|...+++-...
T Consensus 195 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplY 274 (735)
T KOG3626|consen 195 VIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLY 274 (735)
T ss_pred hhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHH
Confidence 0 022678889999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhc----------------------chhHHHHHHHHHHHHHHHHhhhcccch
Q psy3965 252 GISYLFPVPLGYIAISGIAYYIH----------------------SWRILQWVITAPTIIFLILWWCIPESP 301 (535)
Q Consensus 252 ~~~~~~~~~lG~~i~~~l~~~~~----------------------~Wr~~~~~~~~~~l~~~~~~~~lpesp 301 (535)
.+++.....+|.++|.+++.+.. .|..-|++.+.+.++..+.++++|...
T Consensus 275 lgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 275 LGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 99999999999999988887751 266667777777777777777777653
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=102.03 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=107.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.......++.++.|+ +.||+|||+++.++.++..+..++..+.++.+.+.+.+++.|++.+...+....+
T Consensus 238 g~~~~~~~~~~~~~~~~~g~-----l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~ 312 (375)
T TIGR00899 238 GLMMGTAAGLEIPFMLLAGY-----LIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLY 312 (375)
T ss_pred HHHHHHHHHHHHHHHHhHHH-----HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556667788899 9999999999988877766666666667888888889999999999888888889
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhccc
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIPE 299 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpe 299 (535)
+.|..|+ +|+.+.++.+....+|..+++.+++.+ .+|+..+++.++..++..+...+++|
T Consensus 313 ~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 313 FQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 9998875 566889999888889999999888765 37999999888877776666555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.6e-09 Score=103.56 Aligned_cols=127 Identities=14% Similarity=-0.048 Sum_probs=107.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchH--HHHHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWF--EGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~--~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
++..+.+.++..++.++.|+ ++||+|||+.+.++.++..++.++..+.++. ..+.+..++.|++.+...+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~-----l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 317 (377)
T TIGR00890 243 VLAVSISSIFNGGGRPFLGA-----LSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFP 317 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccH
Confidence 56678889999999999999 9999999999999999888888877776643 3455677888998888888888
Q ss_pred hhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHH
Q psy3965 237 VLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIF 290 (535)
Q Consensus 237 ~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~ 290 (535)
.++.|.+|+++|++..++.+....+|..++|.+.+.+ .+|++.|.+.++..++.
T Consensus 318 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 318 SLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 8999999999999999999999999999999988765 38999988877665553
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.5e-09 Score=106.22 Aligned_cols=129 Identities=10% Similarity=-0.001 Sum_probs=104.2
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccccc--CchhhHHH--HHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF--GRKRALMG--SLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~--Grr~~l~~--~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~ 234 (535)
++..++..++.+++.++.|. ++||. ++|+...+ +.++.+++.++..++++++.+++.+++.|++.+...+.
T Consensus 279 g~~~~~~~~~~~~~~~~~g~-----l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~ 353 (455)
T TIGR00892 279 AFLLSIIGFVDIFARPSCGL-----IAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGAL 353 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHH
Confidence 66777888888999999999 99984 33433333 34444555556677889999999999999999999999
Q ss_pred HHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc----chhHHHHHHHHHHHHHHH
Q psy3965 235 GFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH----SWRILQWVITAPTIIFLI 292 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----~Wr~~~~~~~~~~l~~~~ 292 (535)
..+++.|.+|++++++..++++....+|.+++|.+++.+. +|++.|++.++..++..+
T Consensus 354 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 354 LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999887652 699999888776555433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-08 Score=103.41 Aligned_cols=139 Identities=16% Similarity=-0.013 Sum_probs=98.1
Q ss_pred eeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhc--hhhccchHHHHHHHHHHH
Q psy3965 152 IISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGA--GVAASPWFEGYLVLRAML 224 (535)
Q Consensus 152 i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~--~~~~~~s~~~l~~~r~l~ 224 (535)
+++++++ ++..+.+.++..++.++.|+ ++||+|||+.+.....+..++.. .....++.+.+.+.+++.
T Consensus 285 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~-----lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (467)
T PRK09556 285 AFQELGFSKEDAINTFTLFEIGALVGSLLWGW-----LSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFAL 359 (467)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4455666 55667788899999999999 99999999887765544443322 223445677777888888
Q ss_pred hhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhh-HHHHHHHHHhhhc---------------chhHHHHHHHHHHH
Q psy3965 225 GFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPL-GYIAISGIAYYIH---------------SWRILQWVITAPTI 288 (535)
Q Consensus 225 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~l-G~~i~~~l~~~~~---------------~Wr~~~~~~~~~~l 288 (535)
|++..+..........|..|++.|+.+.++.+....+ |..++|.+.+.+. +|+..|++..+..+
T Consensus 360 G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~ 439 (467)
T PRK09556 360 GFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAI 439 (467)
T ss_pred HHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHH
Confidence 8765444444446677999999999999999877775 6566666554432 48998888766666
Q ss_pred HHHHHhh
Q psy3965 289 IFLILWW 295 (535)
Q Consensus 289 ~~~~~~~ 295 (535)
+..+..+
T Consensus 440 ~~~~~~~ 446 (467)
T PRK09556 440 GCICLMA 446 (467)
T ss_pred HHHHHHH
Confidence 6444433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-08 Score=103.88 Aligned_cols=134 Identities=16% Similarity=0.001 Sum_probs=108.4
Q ss_pred HHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchH--HHHHHHHHHHhhhhhhhHHHHHhhhc
Q psy3965 163 MQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWF--EGYLVLRAMLGFVCVSIVFSGFVLCM 240 (535)
Q Consensus 163 s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~--~~l~~~r~l~G~~~~~~~~~~~~~i~ 240 (535)
.+..+..+++.++.++ +.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+..+.+..
T Consensus 362 ~~~~~~~i~~~~~~~~-----l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (505)
T TIGR00898 362 FISGLVELPAKLITLL-----LIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTA 436 (505)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666778888899 9999999999999999998888887776644 55566667778888888889999999
Q ss_pred ccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhhhcccch
Q psy3965 241 EIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH-SWRILQWVITAPTIIFLILWWCIPESP 301 (535)
Q Consensus 241 e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~-~Wr~~~~~~~~~~l~~~~~~~~lpesp 301 (535)
|.+|++.|+.+.++.+....+|.+++|.+..... ++...+++.++..++..+..+++||+.
T Consensus 437 e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 437 ELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999999887322 455667777777666666677789863
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-07 Score=97.57 Aligned_cols=137 Identities=9% Similarity=-0.036 Sum_probs=113.8
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+++.+.+.++..++.++.++ +.||.++++.+..+.++.+++.++..+.++.+.+.++.++.|++.+...+...++
T Consensus 262 g~~~~~~~~g~~ig~~~~~~-----l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 336 (417)
T PRK10489 262 GLLYAAVPLGAALGALTSGW-----LAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTL 336 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888999999999999 9999888888888888888888888888998888899999999988888888899
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHH-HHHHhhhcccc
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTII-FLILWWCIPES 300 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~-~~~~~~~lpes 300 (535)
+.|..|++.|+++.+++.....+|..+++.+.+.+. +++..+++.++..++ ..+....+||.
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 337 LQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999887774 566666665554444 44445556654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-08 Score=101.99 Aligned_cols=147 Identities=12% Similarity=-0.014 Sum_probs=101.0
Q ss_pred CceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc--chH-H-HHHHH
Q psy3965 150 DTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS--PWF-E-GYLVL 220 (535)
Q Consensus 150 ~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~--~s~-~-~l~~~ 220 (535)
|.+.++.+. .+......++..++.++.|+ ++||+|||++++.+.++.+++.++.+.. ++. . ....+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~-----l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 369 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIM-----TVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 369 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHH-----HHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 444455554 33444566778889999999 9999999999999999888887766533 111 1 22233
Q ss_pred HHHHhhhhhh-hHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---------cchhHHHHHHHHHHHHH
Q psy3965 221 RAMLGFVCVS-IVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---------HSWRILQWVITAPTIIF 290 (535)
Q Consensus 221 r~l~G~~~~~-~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---------~~Wr~~~~~~~~~~l~~ 290 (535)
-++.+++.+. ..+....++.|.+|+++|+.+.++......+|.++++.+...+ .+|++.|++.++.+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (479)
T PRK10077 370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 449 (479)
T ss_pred HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence 3444444433 2366789999999999999999999988888888775544321 26778888877766664
Q ss_pred HHH-hhhcccch
Q psy3965 291 LIL-WWCIPESP 301 (535)
Q Consensus 291 ~~~-~~~lpesp 301 (535)
.+. +++.||+.
T Consensus 450 ~~~~~~~~~e~~ 461 (479)
T PRK10077 450 ALFMWKFVPETK 461 (479)
T ss_pred HHHHHhccccCC
Confidence 444 45667763
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-07 Score=92.10 Aligned_cols=299 Identities=14% Similarity=0.087 Sum_probs=178.1
Q ss_pred hHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhcc
Q psy3965 162 EMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCME 241 (535)
Q Consensus 162 ~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e 241 (535)
+++-+....+.+++.+. +.|+.|.|+.+.++...+....+..-+-+ -+-+++.-.+.|+|.+..+..--.|++|
T Consensus 56 ~aiiY~~ftv~~l~~ps-----iv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~ 129 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPS-----IVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTS 129 (461)
T ss_pred HHHHHHHHHHHHHhhHH-----HHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhh
Confidence 67888888999999999 99999999999999999988877776644 6667788899999999999999999999
Q ss_pred cccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc-----------chh-HHH----------HHHHHH---HHHHHHHhhh
Q psy3965 242 IVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH-----------SWR-ILQ----------WVITAP---TIIFLILWWC 296 (535)
Q Consensus 242 ~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~-----------~Wr-~~~----------~~~~~~---~l~~~~~~~~ 296 (535)
..+++.+.+..++.......+.++|+.+-..+. +-+ ..+ .+.+++ ..+..+...+
T Consensus 130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~ 209 (461)
T KOG3098|consen 130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDF 209 (461)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheee
Confidence 999999998888887777777777766554431 111 111 011111 1111111111
Q ss_pred cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhh
Q psy3965 297 IPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSV 376 (535)
Q Consensus 297 lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 376 (535)
.|.. .. ..+++ .. +....+.-....++++++++.......+..++..
T Consensus 210 ~p~~-~~------~~~~~-----------------------~~---~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~ 256 (461)
T KOG3098|consen 210 LPSK-DV------VNCKS-----------------------SS---ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLET 256 (461)
T ss_pred cCcc-ch------hhhhh-----------------------hc---cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence 2211 00 00000 00 0000000112334566676655555444443322
Q ss_pred HHh--hhhhhhccC-ccCCc-eeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhh---cCChh
Q psy3965 377 YLV--YYGLVLNLS-NIGGD-VYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLK---MGRRR 449 (535)
Q Consensus 377 ~~~--~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr---~grr~ 449 (535)
++. .|...+... ..+.+ .+.. + ......+++++.+....+.+.+| +||++
T Consensus 257 Sf~~~iypt~i~ft~~~~~n~~~~~----a-------------------i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~ 313 (461)
T KOG3098|consen 257 SFWISIYPTCISFTRKLGSNTTYLI----A-------------------IYSIGIGLGEVIGGLDFSILSKRIRGFGRKP 313 (461)
T ss_pred HHHHhccchhhhhhhhccCcchhHH----H-------------------HHHHHHhHHHHHHHHHHHHHhhhhhhcccCc
Confidence 221 111111111 11111 1100 0 11123347777777777777765 67888
Q ss_pred HHHHHHHHHHHHHHHHHhc-CC----------------ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHH
Q psy3965 450 PLCLTTMAAGVACLVTLAF-PQ----------------GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGA 512 (535)
Q Consensus 450 ~l~~~~~~~~i~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~ 512 (535)
.+.++..+..+.+++.... |. ......++.++.+++-++.....+.++..++| +.|..+.++
T Consensus 314 ~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi 392 (461)
T KOG3098|consen 314 TVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSL 392 (461)
T ss_pred chhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHH
Confidence 8888877777766665433 11 12356667778888888888899999999995 457777776
Q ss_pred HHHHHhHHHHH
Q psy3965 513 SSVPAGVALIL 523 (535)
Q Consensus 513 ~~~~~~ig~~i 523 (535)
.-.-..+++.+
T Consensus 393 ~kfyq~~~s~v 403 (461)
T KOG3098|consen 393 FKFYQSVASCV 403 (461)
T ss_pred HHHHHHHHHHH
Confidence 65555554433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=97.37 Aligned_cols=132 Identities=13% Similarity=0.025 Sum_probs=95.9
Q ss_pred HHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhc----cchHHHHHHHHHHHhhhhhhhHHHHHhhh
Q psy3965 164 QSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAA----SPWFEGYLVLRAMLGFVCVSIVFSGFVLC 239 (535)
Q Consensus 164 ~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~----~~s~~~l~~~r~l~G~~~~~~~~~~~~~i 239 (535)
...+...++.++.|+ ++||+|||+++..+.++..++.+.... .++.+.+++..++.|++.+...+...+++
T Consensus 294 ~~g~~~~i~~~~~g~-----l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 368 (438)
T PRK09952 294 LVGGLSCLTIPCFAW-----LADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMF 368 (438)
T ss_pred HHHHHHHHHHHHHHH-----HHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677788999 999999999998887766554433322 23455555666777888888888889999
Q ss_pred cccccCcchhhhhhhh-hhhhhhHHHHHHHHHhhh-----cchhHHHHHHHHHHHHHHHHhhhcccc
Q psy3965 240 MEIVGGKWLTIAGISY-LFPVPLGYIAISGIAYYI-----HSWRILQWVITAPTIIFLILWWCIPES 300 (535)
Q Consensus 240 ~e~~~~~~r~~~~~~~-~~~~~lG~~i~~~l~~~~-----~~Wr~~~~~~~~~~l~~~~~~~~lpes 300 (535)
.|.+|++.|+...++. ..+..+|..++|.+...+ .+|+..+...++..++..+..+.++|+
T Consensus 369 ~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 369 TEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999998887774 444557888888777665 248888877777777766666666664
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-08 Score=91.72 Aligned_cols=129 Identities=19% Similarity=0.038 Sum_probs=99.0
Q ss_pred hhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccC
Q psy3965 166 DFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGG 245 (535)
Q Consensus 166 ~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~ 245 (535)
.+.-.-|.++.+. +.||+|||+.+.+++++++++.++.....+-..+.+.-|..-++..+.+.+.++|..|.+|.
T Consensus 391 slaefPGlLIt~~-----iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 391 SLAEFPGLLITGV-----IVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPT 465 (528)
T ss_pred HHhhCCchhHHHH-----HHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccch
Confidence 4455678888899 99999999999999999999999887765544444444445555567788899999999999
Q ss_pred cchhhhhhhhhhhhhhHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhhhccc
Q psy3965 246 KWLTIAGISYLFPVPLGYIAISGIAYYIH-SWRILQWVITAPTIIFLILWWCIPE 299 (535)
Q Consensus 246 ~~r~~~~~~~~~~~~lG~~i~~~l~~~~~-~Wr~~~~~~~~~~l~~~~~~~~lpe 299 (535)
+-|+...|......-+|.++.|.++.... +-.....+.+...++..++..++|-
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeee
Confidence 99999999999999999999999983332 2233444556666666666666663
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=94.74 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=103.0
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.+.++..++.++.|+ +.||+|||+++..+..+..++.+... + ...+...+++.|++.....+...++
T Consensus 238 g~~~~~~~~~~~~~~~~~g~-----l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~ 309 (381)
T PRK03633 238 GFWMALLVSAGILGQWPIGR-----LADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAW 309 (381)
T ss_pred HHHHHHHHHHHHHHHhhhHH-----HHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56667788888999999999 99999999999888888777665443 2 2344567788888877888999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhh
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWW 295 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~ 295 (535)
+.|..|+++++...+.....+.+|.+++|.+++.+ .+|++.|.+.+...++..+..+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 310 ACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 99999988888777887888999999999988877 3789998887777666554444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=94.74 Aligned_cols=133 Identities=8% Similarity=-0.102 Sum_probs=110.2
Q ss_pred eccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhh
Q psy3965 153 ISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFV 227 (535)
Q Consensus 153 ~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~ 227 (535)
.+|.+. ++..+...++..++.++.++ +.||+|+|+.+.++.++..+..++.+++++.+.+++.+++.|++
T Consensus 232 l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~-----l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~ 306 (382)
T TIGR00902 232 WQAAGISASATGLLWGIGVLAEIIIFAFSNK-----LFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGT 306 (382)
T ss_pred HHHCCCCHhHHHHHHHHHHHHHHHHHHHhHH-----HHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 344555 55666777788888888889 99999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhhcccccCcchhhhhhhhh-hhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHH
Q psy3965 228 CVSIVFSGFVLCMEIVGGKWLTIAGISYL-FPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLI 292 (535)
Q Consensus 228 ~~~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~ 292 (535)
.+...+....++.+. |+++|+...++++ ...++|.++++.+++.+. ++ ..|++.++.+++.++
T Consensus 307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 999999999999998 9999999888876 567899999999988874 43 345555555554433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-07 Score=92.98 Aligned_cols=122 Identities=16% Similarity=0.030 Sum_probs=88.0
Q ss_pred ceeeccCCcccccccc---C--chhhHHHHHHHHHHhhchhhcc----chHHHHHHHHHHHhhhhhhhHHHHHhhhcccc
Q psy3965 173 KLYTGQSNLDDTGSRF---G--RKRALMGSLVCQLVLGAGVAAS----PWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIV 243 (535)
Q Consensus 173 ~~~~G~~~~~~l~Dr~---G--rr~~l~~~~~~~~i~~~~~~~~----~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~ 243 (535)
-++.|. ++|-+ | ||+-++++.++..++.+..+.. .+.....+.-++..+|.+....++-+++.|..
T Consensus 41 Kp~~g~-----lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~ 115 (433)
T PF03092_consen 41 KPLYGL-----LSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELA 115 (433)
T ss_pred hhhHHh-----hcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 456677 99975 3 5666666777775555544443 45777778889999999999999999999998
Q ss_pred c--CcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 244 G--GKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 244 ~--~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
. ++.|+...+.......+|.+++..+++.+ .++|..|.+.++..++..+. .+..+|
T Consensus 116 ~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 116 RREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 5 34467777788888888999888877665 27888888877665554444 444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-07 Score=77.50 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=85.5
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++.+++.++.+++.||+|||+.+..+..+..++.+..... ++.+......++.+++.+...+....+..|.+|++.|++
T Consensus 9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (141)
T TIGR00880 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGV 87 (141)
T ss_pred hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhH
Confidence 6778889999999999999999998888877777666554 344455556667777777777888899999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
+.++.+....+|..++|.+.....
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 88 ALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHHHhHHHHHHHhHHhHHHHh
Confidence 999999999999999998887543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-07 Score=94.86 Aligned_cols=134 Identities=11% Similarity=-0.096 Sum_probs=107.3
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.+.++..+|.++.|+ ++||+|||+.+.....+..+..++....++.+.+.+..++.|++.+...+...++
T Consensus 244 ~~~~~~~~~~~~ig~~~~g~-----l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 318 (394)
T PRK03699 244 GNLVSNFWMAYMVGMWIFSF-----IVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITL 318 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888999999999999 9999999999998887777777777777888777788899999888888888888
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcc
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIP 298 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lp 298 (535)
..|..| ++++...+.......+|..++|.+.+.+ .||+..+++.++..++..++...++
T Consensus 319 ~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 319 GSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 888775 4456677777778889999999887766 3889888887776666555554444
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.3e-08 Score=99.37 Aligned_cols=147 Identities=11% Similarity=-0.011 Sum_probs=105.6
Q ss_pred CceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhc-----cc------h
Q psy3965 150 DTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAA-----SP------W 213 (535)
Q Consensus 150 ~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~-----~~------s 213 (535)
+.+.++++. ++......++..++.++.|+ ++||+|||+.+..+.++..++.++.++ .+ +
T Consensus 308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-----l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (481)
T TIGR00879 308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIF-----LVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG 382 (481)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence 444445554 45566778888999999999 999999999999988887777666652 12 3
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHH
Q psy3965 214 FEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIF 290 (535)
Q Consensus 214 ~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~ 290 (535)
...+....++.+....+..+....++.|.+|+++|+...++.+....+|.++++.+...+ .+|++.|++.++.+++.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 462 (481)
T TIGR00879 383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLG 462 (481)
T ss_pred HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHH
Confidence 333333333333333334466667789999999999999999999999999999887665 37999888887776665
Q ss_pred HHH-hhhcccch
Q psy3965 291 LIL-WWCIPESP 301 (535)
Q Consensus 291 ~~~-~~~lpesp 301 (535)
.+. .++.||++
T Consensus 463 ~i~~~~~~~~~~ 474 (481)
T TIGR00879 463 LIFVYFFLPETK 474 (481)
T ss_pred HHHHheecccCC
Confidence 444 45567653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-07 Score=96.78 Aligned_cols=127 Identities=13% Similarity=-0.077 Sum_probs=96.9
Q ss_pred ccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc--chHHHHHHHHHHHhh
Q psy3965 154 SEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS--PWFEGYLVLRAMLGF 226 (535)
Q Consensus 154 ~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~--~s~~~l~~~r~l~G~ 226 (535)
++++. +++.+.+.++.+++.++.|+ ++||+|||+++..+.++..+..++.... .+.+.+.+..++.+.
T Consensus 304 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~-----l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (496)
T PRK03893 304 TDLGYDPHTVANVLFFSGFGAAVGCCVGGF-----LGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQM 378 (496)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 45555 77778899999999999999 9999999999988877766665443332 344455555565555
Q ss_pred hhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHH
Q psy3965 227 VCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITA 285 (535)
Q Consensus 227 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~ 285 (535)
...+..+....++.|.+|+++|++..++......+|..++|.+++.+. +|+..+...+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 444455667788899999999999999999999999999999887763 67777655443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-07 Score=96.99 Aligned_cols=133 Identities=12% Similarity=-0.074 Sum_probs=90.4
Q ss_pred HHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccch----HHHHHHHHHHHhhhhhhhHHHHHhhh
Q psy3965 164 QSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPW----FEGYLVLRAMLGFVCVSIVFSGFVLC 239 (535)
Q Consensus 164 ~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s----~~~l~~~r~l~G~~~~~~~~~~~~~i 239 (535)
+..++.+++.++.++ ++||+|||++++.+.++.+++.++.++..+ ...+...-+...++..+..+....+.
T Consensus 343 ~~~~~~i~g~~~~~~-----l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (502)
T TIGR00887 343 IALAGTVPGYWVTVF-----LVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVP 417 (502)
T ss_pred HHHHHHHHHHHHHHH-----HhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhh
Confidence 344566778888999 999999999999888777776665554321 11111111111222223345667778
Q ss_pred cccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhcc-------------hhHHHHHHHHHHHHHHHHhhhcccch
Q psy3965 240 MEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHS-------------WRILQWVITAPTIIFLILWWCIPESP 301 (535)
Q Consensus 240 ~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~~-------------Wr~~~~~~~~~~l~~~~~~~~lpesp 301 (535)
.|.+|.+.|++..++.+....+|.++++.+...+.+ +...+++.++..++..+..+++||+.
T Consensus 418 ~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 418 GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred hccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence 999999999999999999999999999887655421 34566666666666555567789974
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.5e-07 Score=90.74 Aligned_cols=130 Identities=12% Similarity=-0.006 Sum_probs=100.6
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.+.++..++.++.|+ ++||+|||+......+......++..+.++.+.+.++.++.|++.+...+.....
T Consensus 244 ~~~~~~~~~~~~~g~~~~g~-----l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 318 (390)
T PRK03545 244 TLLLLLFGGAGIIGSVLFSR-----LGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVK 318 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 66677888899999999999 9999998875544433333333344566788888889999999988777777788
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHh
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILW 294 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~ 294 (535)
+.|..| ++|+++.++......+|..+++.+++.+. ++|..+++.++..++..+..
T Consensus 319 ~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 319 VLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 888765 68899999998888999999999887763 78999888877766644443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.7e-07 Score=92.16 Aligned_cols=141 Identities=13% Similarity=0.018 Sum_probs=100.9
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHH-HHHHHHHHhhchhh-----ccchHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALM-GSLVCQLVLGAGVA-----ASPWFEGY 217 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~-~~~~~~~i~~~~~~-----~~~s~~~l 217 (535)
.|...++.+. ++..+...++..++.++.|+ ++||+|||+.+. .+.+...++.+... ..++++.+
T Consensus 245 ~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~-----l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 319 (402)
T TIGR00897 245 LPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGI-----VGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA 319 (402)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH-----HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence 3444455555 45556778899999999999 999999988764 33333333332222 23567777
Q ss_pred HHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHh
Q psy3965 218 LVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILW 294 (535)
Q Consensus 218 ~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~ 294 (535)
.+..++.|++.+...+. ...+.|. ++++|+++.++.+....+|..++|.++..+ .||+..+++.++..++..+..
T Consensus 320 ~~~~~~~G~~~~~~~~~-~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 320 LIIAIALGIFLAGYVPL-AAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 88899999988776554 4556675 456899999999999999999999887665 378888888887766655554
Q ss_pred hh
Q psy3965 295 WC 296 (535)
Q Consensus 295 ~~ 296 (535)
++
T Consensus 398 ~~ 399 (402)
T TIGR00897 398 AF 399 (402)
T ss_pred HH
Confidence 44
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-07 Score=92.83 Aligned_cols=101 Identities=12% Similarity=0.007 Sum_probs=82.3
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
+...+..++.|.+.||+|||+++.++..+.+++.+++.+..+ . +..-++.+++.+...|...+++.|.+|++.|++
T Consensus 49 l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~-~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~ 124 (393)
T PRK11195 49 LAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH-P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVK 124 (393)
T ss_pred HHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 566778899999999999999999998888777665544322 1 333456677788888999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
+.|+.+....+|.+++|.+.++..+
T Consensus 125 a~~~~~~~~~~~~~~Gp~lgG~l~~ 149 (393)
T PRK11195 125 ANGWMEGSTIAAILLGTVLGGALAD 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.1e-07 Score=92.37 Aligned_cols=126 Identities=14% Similarity=-0.059 Sum_probs=112.2
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
|++.+.+.+|.++|+++.+. +.+|+++++.+..+.++.+++.+..+++++.+..++.-++.|++.........+.
T Consensus 257 Gll~a~~gvGai~Gal~~~~-----l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~ 331 (524)
T PF05977_consen 257 GLLLAAFGVGAILGALLLPR-----LRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTL 331 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTII 289 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~ 289 (535)
+.+..|++.||++++++++....+..+|..+.+.+. |-+..+.+.++..++
T Consensus 332 ~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll 385 (524)
T PF05977_consen 332 VQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLL 385 (524)
T ss_pred HHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999999999999999999888888888888877764 566666666654444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-07 Score=92.49 Aligned_cols=101 Identities=17% Similarity=0.064 Sum_probs=84.7
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.+..|++.||+|||+.+..+.++.+++.++..+.++ .+...+.-++.+++.+...+....++.|.+|++.|+.
T Consensus 54 ~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~ 132 (412)
T TIGR02332 54 AAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATG-PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRAR 132 (412)
T ss_pred HHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHH
Confidence 566778889999999999999999999888888888776544 4455555667778887777888889999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l 530 (535)
+.|+.+....+|.+++|.+...
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~ 154 (412)
T TIGR02332 133 ANALFMIAMPVTMALGLILSGY 154 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888754
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=90.80 Aligned_cols=110 Identities=15% Similarity=0.015 Sum_probs=93.1
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc-chHHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS-PWFEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~-~s~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
++..+...++.+++.+++++ ++||+|||+++.++.++..++.++..+. ++.+.+.+..++.|++.+...+...+
T Consensus 260 ~~~~~~~~i~~ii~~~~~~~-----l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 260 SYMGSIAIVAGLIGVLLFPR-----LVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778999999999999 9999999999999998888887776665 46677788889999999999999999
Q ss_pred hhccccc-------CcchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 238 LCMEIVG-------GKWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 238 ~i~e~~~-------~~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45678999999999999998888877665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.44 E-value=6e-07 Score=90.66 Aligned_cols=129 Identities=14% Similarity=-0.050 Sum_probs=92.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchh--hH------HHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKR--AL------MGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVS 230 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~--~l------~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~ 230 (535)
++..+...++..++.++.|+ ++||+|||+ .. ..+.++..+........++.+......++.+.+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (399)
T TIGR00893 254 GFMASLPGIVGFIGMILGGR-----LSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG- 327 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-
Confidence 67778888999999999999 999999996 11 11111122222222233455555544455555544
Q ss_pred hHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---c-hhHHHHHHHHHHHHHHHH
Q psy3965 231 IVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---S-WRILQWVITAPTIIFLIL 293 (535)
Q Consensus 231 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~-Wr~~~~~~~~~~l~~~~~ 293 (535)
..+....++.|..|+++|++..++.+....+|..++|.+.+.+. + |+..+++.++..++..+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998887763 5 888888877766654443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-07 Score=92.12 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=85.5
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|.+.||+|||+.+..+.++.+++.++..+.+ +.+......++.+++.+...+....++.|.+|++.|+.
T Consensus 58 ~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~ 136 (405)
T TIGR00891 58 ISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP-GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNK 136 (405)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhH
Confidence 67778899999999999999999999888888877776654 34455556677777777777888899999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.|+.+....+|.+++|.+....
T Consensus 137 ~~~~~~~~~~~g~~~~~~l~~~l 159 (405)
T TIGR00891 137 ASGLLISGYAVGAVVAAQVYSLV 159 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887643
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.4e-07 Score=90.40 Aligned_cols=136 Identities=11% Similarity=-0.106 Sum_probs=101.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhc-cchHHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAA-SPWFEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~-~~s~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
+...+.+.++..+|.++.|+ +.||+|||+.+..+..+..++.++... .++...+ .-++.|++.+...+....
T Consensus 243 g~~~~~~~i~~i~g~~~~g~-----l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~ 315 (393)
T PRK09705 243 GSLLALMTLGQAAGALLMPA-----MARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLL 315 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----HHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHH
Confidence 66778899999999999999 999999999999888877777665543 3332222 235678888888887777
Q ss_pred hhccccc-CcchhhhhhhhhhhhhhHHHHHHHHHhhhc----chhHHHHHHHHHHHHHH-HHhhhcccch
Q psy3965 238 LCMEIVG-GKWLTIAGISYLFPVPLGYIAISGIAYYIH----SWRILQWVITAPTIIFL-ILWWCIPESP 301 (535)
Q Consensus 238 ~i~e~~~-~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----~Wr~~~~~~~~~~l~~~-~~~~~lpesp 301 (535)
...+..+ +++|++..++.+....++..++|.+.+.+. +|+..+++.++..++.. +...+.||++
T Consensus 316 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 316 LALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7777775 578899999988888888888888877763 57777777766655543 3456677764
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.7e-07 Score=92.29 Aligned_cols=124 Identities=16% Similarity=0.031 Sum_probs=94.2
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhh--chhhc--cchHHHHHHHHHHHhhhhhhhHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLG--AGVAA--SPWFEGYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~--~~~~~--~~s~~~l~~~r~l~G~~~~~~~~~ 234 (535)
+...+...++..++.++.|+ ++||+|||+.+..+..+..+.. +...+ .++.+.+.+..++.|++.+...+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~g~-----l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 332 (394)
T TIGR00883 258 LLVLMLSLILFFITIPLSGA-----LSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGP 332 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhh
Confidence 55667788889999999999 9999999998876554444333 12222 356777788889999999999999
Q ss_pred HHhhhcccccCcchhhhhhh-hhhhhhhHHHHHHHHHhhhc---c-hhHHHHHHHHHH
Q psy3965 235 GFVLCMEIVGGKWLTIAGIS-YLFPVPLGYIAISGIAYYIH---S-WRILQWVITAPT 287 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~i~~~l~~~~~---~-Wr~~~~~~~~~~ 287 (535)
..+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+. + |+..++...+..
T Consensus 333 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 333 MGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 99999999999999998887 45666778888888877652 4 887766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-06 Score=80.86 Aligned_cols=128 Identities=13% Similarity=-0.011 Sum_probs=85.2
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+.+....+...++.+++.|. ++||+|||+.-+...++.+++++ +-..++++.++++|++.|++.+....+--++
T Consensus 72 a~Lf~~Gf~Ss~i~g~~~G~-----laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW 145 (354)
T PF05631_consen 72 AILFVAGFASSAIFGTFVGS-----LADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESW 145 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666677777888888 99999999999999999999986 4556899999999999999999999988886
Q ss_pred h-cccccC----cchhhhhhhhh-hhhhhHHHHHHHHHhhhcc-----hhHHHHHHHHHHHHHHH
Q psy3965 239 C-MEIVGG----KWLTIAGISYL-FPVPLGYIAISGIAYYIHS-----WRILQWVITAPTIIFLI 292 (535)
Q Consensus 239 i-~e~~~~----~~r~~~~~~~~-~~~~lG~~i~~~l~~~~~~-----Wr~~~~~~~~~~l~~~~ 292 (535)
. .|.-.. +..+...+... ...++-.+.+++++..+.+ -..+|....+..++..+
T Consensus 146 ~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 146 MVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 4 565322 22222222222 1222333444444444422 25567666655554333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=7e-07 Score=92.97 Aligned_cols=110 Identities=14% Similarity=0.041 Sum_probs=90.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc---chHHHHHHHHHHHhhhhhhhHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS---PWFEGYLVLRAMLGFVCVSIVFSG 235 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~---~s~~~l~~~r~l~G~~~~~~~~~~ 235 (535)
++....+.++..++.++.|+ +.||+|||+++..+.++..++.++..+. ++.+.+.+..++.|++.+...+..
T Consensus 300 g~~~~~~~~~~~~~~~~~~~-----l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (471)
T PRK10504 300 GLMMIPMVLGSMGMKRIVVQ-----VVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSM 374 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667777777788999 9999999999999888887776665543 344455566788899988888899
Q ss_pred HhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 236 FVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 236 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
..++.+..|++.|+...++.+....+|..+++.+++.+
T Consensus 375 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 375 NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887665
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.4e-07 Score=90.11 Aligned_cols=129 Identities=14% Similarity=0.094 Sum_probs=105.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+...++..+...++.+..|+ +.||+|||+.+.++.++.++...+..++++.+.+++.+++.|++..........+
T Consensus 257 g~~~~~~~i~~~~~~~~~g~-----l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 331 (396)
T TIGR00882 257 GYVTTMGELLNALIMFCAPL-----IINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKY 331 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777888889999 9999999999999999888888887888999999999999999987777777778
Q ss_pred hcccccCcchhhhhhh-hhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHH
Q psy3965 239 CMEIVGGKWLTIAGIS-YLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLI 292 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~-~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~ 292 (535)
..+..+++.++...+. .+....+|..+++.+++.+. ||+..|.+.++..++..+
T Consensus 332 ~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 332 ITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 8888888888776655 56778889999988877763 789999888777665443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.2e-07 Score=92.01 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=84.5
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++.+++.++.+++.||+|||+.+..+.++.+++.++....+ +.+...+..++.+++.+...+....+..|.+|++.|+.
T Consensus 63 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~ 141 (398)
T TIGR00895 63 IGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT-NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGT 141 (398)
T ss_pred HHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhch
Confidence 66778889999999999999999999888888777766554 34455555666777777778888999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.|+......+|..++|.+....
T Consensus 142 ~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 142 AVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999887543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-06 Score=88.98 Aligned_cols=102 Identities=10% Similarity=0.042 Sum_probs=79.8
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
+..+++.++.|+++||+|||+.+..+.++.+++.+++.+.++ .+..+....+.+.+.+...+....+..|.+|++.|++
T Consensus 54 ~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (395)
T PRK10054 54 TIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN-VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTK 132 (395)
T ss_pred HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHH
Confidence 567778899999999999999999888888777777666543 3333333334444445556677888999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.|+.+....+|.+++|.+..+.
T Consensus 133 ~~g~~~~~~~lg~~igp~l~~~l 155 (395)
T PRK10054 133 IFSLNYTMLNIGWTVGPPLGTLL 155 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888764
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=86.60 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=87.0
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|.+.||+|||+.+..+.++.+++.++..+. ++.+..++..++.+++.+...+....++.|.+|++.|+.
T Consensus 43 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~ 121 (352)
T PF07690_consen 43 LGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGR 121 (352)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-hhHHHHhhhccccccccccccccccccccccchhhhhhh
Confidence 6678899999999999999999999998888885555443 444566677778888888888999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
+.|+.+....+|.+++|.+.....
T Consensus 122 ~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 122 AFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccchhhhhhhcccchhhhhh
Confidence 999999999999999999987643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-06 Score=83.05 Aligned_cols=125 Identities=18% Similarity=0.140 Sum_probs=103.3
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccch--HHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPW--FEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s--~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
++..+.+.++..++.++.|. ++||+|||+.+..+.....++.++.++..+ .+.+.+.|++.|++.+...+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~-----l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 116 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGP-----LGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVAS 116 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhh-----ccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 78889999999999999999 999999998888888766666667777666 99999999999999999999999
Q ss_pred hhhcccccC-cchhhhhhhhhh-hhhhHHHHHHHHHhhhc-----chhHHHHHHHHHHH
Q psy3965 237 VLCMEIVGG-KWLTIAGISYLF-PVPLGYIAISGIAYYIH-----SWRILQWVITAPTI 288 (535)
Q Consensus 237 ~~i~e~~~~-~~r~~~~~~~~~-~~~lG~~i~~~l~~~~~-----~Wr~~~~~~~~~~l 288 (535)
+++.|+.|+ ++|+...+.... ...+|.++++.++..+. +||..+.+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 117 ALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999988 678888888777 57788888886665542 78886665554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=88.90 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=86.4
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.+.+.||+|||+.+..+.++.+++.++..+. ++.+..++.-++.+++.+...+....++.|.+|++.|+.
T Consensus 66 ~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~ 144 (394)
T PRK10213 66 FVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPK 144 (394)
T ss_pred HHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHH
Confidence 6667788999999999999999999999998888777664 445566666677778888778888899999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.++......+|..++|.+....
T Consensus 145 a~~~~~~~~~~g~~ig~~l~~~l 167 (394)
T PRK10213 145 ALSVIFGAVSIALVIAAPLGSFL 167 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888754
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.3e-07 Score=90.14 Aligned_cols=110 Identities=17% Similarity=0.019 Sum_probs=99.6
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccch-HHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPW-FEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s-~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
++..+.+.++.+++.++.++ +.||+|||+.+..+..+.+++.++..+.++ ++.+.+..++.|++.+...+...+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 324 (365)
T TIGR00900 250 GWVLAAFGLGALLGALLLGL-----LGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGT 324 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888999999999999 999999999999988888888888877774 888899999999999999999999
Q ss_pred hhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 238 LCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 238 ~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
++.|..|+++|++..++.+....+|..+++.+++.+
T Consensus 325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 325 LLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887765
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-06 Score=88.08 Aligned_cols=134 Identities=17% Similarity=0.057 Sum_probs=113.0
Q ss_pred hhHHHhhhhhhcceeeccCCccccccccCch--hhHHHHHHHHHHhhchhhc--------cchHHHHHHHHHHHhhhhhh
Q psy3965 161 YEMQSDFDVQLSKLYTGQSNLDDTGSRFGRK--RALMGSLVCQLVLGAGVAA--------SPWFEGYLVLRAMLGFVCVS 230 (535)
Q Consensus 161 ~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr--~~l~~~~~~~~i~~~~~~~--------~~s~~~l~~~r~l~G~~~~~ 230 (535)
..-+..+..++|++++|+ +.||+|.| ++++.++++..+..+...+ .++-+.+.+.-++.|++.|+
T Consensus 322 ~~l~~~i~a~~Ga~~~g~-----l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~ 396 (477)
T PF11700_consen 322 FGLVVQIVAIIGALLFGW-----LQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGG 396 (477)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhh
Confidence 335567788899999999 99999999 8999988888666666655 67888899999999999999
Q ss_pred hHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHhhhccc
Q psy3965 231 IVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI----HSWRILQWVITAPTIIFLILWWCIPE 299 (535)
Q Consensus 231 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----~~Wr~~~~~~~~~~l~~~~~~~~lpe 299 (535)
..+.+-++.+|..|+++.+...+++....-....++|++.+.+ .+-|+.+....++.++.+++.+.+++
T Consensus 397 ~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 397 IQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999887776 35788877777776776666666654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=80.92 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=115.8
Q ss_pred CCceEecCCCCcCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc-
Q psy3965 138 CQKWLYDTNNFGDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS- 211 (535)
Q Consensus 138 c~~w~y~~~~~~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~- 211 (535)
|.+=.|..+.+.|.+++.+|+ +.+.+.-.+|..+| ++.|. +.|++|.|.++++|.+...+|..+...+
T Consensus 14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~-----l~d~~gp~~~l~iG~~~~~~GY~~~~l~~ 87 (250)
T PF06813_consen 14 CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGL-----LYDRFGPWVVLLIGAVLGFVGYGLLWLAV 87 (250)
T ss_pred hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHH-----HHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334345556678999999988 56667778888774 88899 9999999999999999999888776442
Q ss_pred ------chHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-c-c-hhHHHHH
Q psy3965 212 ------PWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-H-S-WRILQWV 282 (535)
Q Consensus 212 ------~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-~-~-Wr~~~~~ 282 (535)
+++|.+.+..++.|.+.+....++.....+.+| ++||.+.++.-...+++..+-..+...+ . + -+.+++.
T Consensus 88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~l 166 (250)
T PF06813_consen 88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFL 166 (250)
T ss_pred hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHH
Confidence 478888888899999988888888887788887 6899999999999999887766655444 2 2 3334444
Q ss_pred HHHHHHHHHHHhhhcccc
Q psy3965 283 ITAPTIIFLILWWCIPES 300 (535)
Q Consensus 283 ~~~~~l~~~~~~~~lpes 300 (535)
...+.++.++..++++..
T Consensus 167 a~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 167 AVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HHHHHHHHHHHhhheecc
Confidence 444555555555555443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.3e-07 Score=91.30 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=83.3
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|++.||+|||+.+.++.++.+++.++....++ .+...+..++.+++.+..++....+..|.+|++.|++
T Consensus 69 ~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~ 147 (434)
T PRK11663 69 ITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSS-LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGG 147 (434)
T ss_pred HHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHH
Confidence 677788999999999999999999999988888877766543 3344444455566667667788889999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
++|+.+....+|++++|.+....
T Consensus 148 ~~~~~~~~~~~g~~~~~~~~~~l 170 (434)
T PRK11663 148 WWAIWNTAHNVGGALIPLVVGAI 170 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877643
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=101.32 Aligned_cols=124 Identities=15% Similarity=0.054 Sum_probs=105.3
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+++.+.+.+|.++++++.|+ ++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.+...+...++
T Consensus 272 g~~~~~~~ig~~~g~~~~g~-----l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 346 (1146)
T PRK08633 272 QYLLAASAIGIGIGSLLAGR-----LSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNAL 346 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 56677888999999999999 9999999999999988888888888888899999999999999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc----chhHHHHHHHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH----SWRILQWVITAPT 287 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----~Wr~~~~~~~~~~ 287 (535)
+.+..|++.|+++.++.+....+|.++++.++..+. ++...+++.+...
T Consensus 347 ~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 347 IQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT 399 (1146)
T ss_pred HhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 999999999999999999888888877777766552 4445555544433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-05 Score=78.96 Aligned_cols=129 Identities=13% Similarity=-0.060 Sum_probs=88.5
Q ss_pred hhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhc
Q psy3965 161 YEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCM 240 (535)
Q Consensus 161 ~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~ 240 (535)
+.-+-.+..++.-+...+ +.+|+.-+.=...+.++..++.++.+++++.+.=+++-.+.+++.|........+..
T Consensus 64 Vlladi~P~l~~Kl~aP~-----fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~ 138 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPF-----FIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH 138 (402)
T ss_pred HHHHHHHHHHHHHHHhHh-----hhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 333444555566666777 888887665566667788889999999999999999999999998888888877644
Q ss_pred ccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc----chhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 241 EIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH----SWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 241 e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
.+++ ...+.+..|.+.+.++|+..-..+. +-|..+++.....++..+. ++.+|.
T Consensus 139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred -hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4443 3456777788877777776544442 3466666666555554444 444444
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-06 Score=89.85 Aligned_cols=134 Identities=9% Similarity=-0.088 Sum_probs=96.8
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCch-------hhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRK-------RALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSI 231 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr-------~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~ 231 (535)
+...+++.++..++.++.|+ ++||+||| ..+.+..++.++..++.+..++.+...+.-++.+++.+..
T Consensus 291 ~~~~~~~~~~~~ig~~~~G~-----lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 365 (476)
T PLN00028 291 GAIAASFGLMNLFARPAGGY-----LSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAA 365 (476)
T ss_pred HHHHHHHHHHHHHHHhhhHH-----HHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 56677888999999999999 99999875 2333344444444445556667666666677777777766
Q ss_pred HHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh--cchhHHHHHHHHHHHHHHHHhhhcc
Q psy3965 232 VFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI--HSWRILQWVITAPTIIFLILWWCIP 298 (535)
Q Consensus 232 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~--~~Wr~~~~~~~~~~l~~~~~~~~lp 298 (535)
.....+++.+.. +++|+...++...+..+|..+++.+...- .+|+..|++.++..++..+..++++
T Consensus 366 ~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 366 CGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 677777777765 57899999999888888888888764421 2699999888877777666655554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-06 Score=90.53 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=100.4
Q ss_pred cchh-HHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhch---hhcc-chHHHHHHHHHHHhhhhhhhHH
Q psy3965 159 HSYE-MQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAG---VAAS-PWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 159 ~~~~-s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~---~~~~-~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
++.. +...++.++|.++.|+ ++||+|||+.+.++.++.++..++ .+.. ++.+.+.+.-++..++.+...+
T Consensus 261 g~~~~~~g~i~~iiG~ll~G~-----L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~ 335 (491)
T PRK11010 261 GLVNKTLGLLATIVGALYGGI-----LMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTA 335 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 4554 3455788899999999 999999998887766655544332 2233 4555566666776666666667
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhcccc
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIPES 300 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~lpes 300 (535)
...++..+..+++.++...++.+....+|.++++.+++.+ .||+..|.+.++.+++..+...+++++
T Consensus 336 ~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 336 AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7788889999999999999999988899988776666555 389999988888877766665555543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=90.09 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=84.6
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|++.||+|||+.+..+.++.+++.++..+.+ +.+...+.-++.+++.+..++....+..|.+|++.|++
T Consensus 64 ~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~ 142 (426)
T PRK12307 64 IGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS-GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSK 142 (426)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhH
Confidence 66778899999999999999999999999888887776654 34455556667777777778888899999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l 530 (535)
+.|+......+|.+++|.+...
T Consensus 143 ~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 143 ASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred hhhHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999877643
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=88.41 Aligned_cols=130 Identities=16% Similarity=0.022 Sum_probs=84.7
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccccc--CchhhH-HHHHHHHHHhhchhhc--cchHHHHHHHHHHHhhhhhhhHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF--GRKRAL-MGSLVCQLVLGAGVAA--SPWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~--Grr~~l-~~~~~~~~i~~~~~~~--~~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
++..+.+.++..++.++.|+ ++||+ |||+.. +....+..++.++..+ ..+.+...+..++.|.+..+...
T Consensus 292 ~~~~~~~~~~~~~g~~~~G~-----l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 366 (452)
T PRK11273 292 SWAYFLYEYAGIPGTLLCGW-----MSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVM 366 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHH
Confidence 45566777888899999999 99999 555432 2222333333222222 33455555556666665444333
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhhHHH-HHHHHHhhhc---chhHHHHHHHHHHHHHHHH
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLGYI-AISGIAYYIH---SWRILQWVITAPTIIFLIL 293 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~-i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~ 293 (535)
....+..|..|++.|+++.++.+....+|.. ++|.+.+.+. ||+..|++.++.+++..+.
T Consensus 367 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~ 430 (452)
T PRK11273 367 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 430 (452)
T ss_pred HHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4445678999999999999999877777654 4677665552 7999998877766664444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=90.39 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=77.1
Q ss_pred eeehhhHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchh--h
Q psy3965 429 IVEIPAIAMSILILLKM-GRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTK--M 505 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~ 505 (535)
+...++.+++|+++||+ |||+.+.++.++.+++.+++...............+..++.+...+...++..|.+|++ .
T Consensus 56 ~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~ 135 (493)
T PRK15462 56 SLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR 135 (493)
T ss_pred HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc
Confidence 45567888999999999 99999999998888887665543222222222222333445555566678899999986 7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 506 RNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 506 r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
|+++.++..+..++|++++|++.+...
T Consensus 136 R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 136 RDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987653
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-06 Score=85.45 Aligned_cols=125 Identities=9% Similarity=0.031 Sum_probs=99.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+...+...++..++.++.|+ +.||+|+|+.+..+.+..+++.++.+++++.+.+++..++.|++.+...+....+
T Consensus 243 g~~~~~~~~~~~~~~~~~g~-----l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 317 (382)
T PRK11128 243 GYLWSLGVVAEVLIFAFSNR-----LFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRY 317 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677778888888999 9999999999999999999888888889999999999999999999989998888
Q ss_pred hcccccCcchhhhhhhhh-hhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYL-FPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIF 290 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~-~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~ 290 (535)
+.+. +++++++..+..+ ....+|..+++.+++.+. ++ ..++..++..++.
T Consensus 318 ~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 318 IAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 8886 5666788777775 556778788888888774 44 3445455444443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.1e-06 Score=88.46 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=86.3
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++.+++.++.|++.||+|||+.+..+..+.+++.++....+ +.+..++..++.+++.+...+....++.|.+|++.|+.
T Consensus 48 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~ 126 (485)
T TIGR00711 48 LANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP-NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGR 126 (485)
T ss_pred HHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHH
Confidence 77788899999999999999999999988888887776654 34455566667777777777888999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.++......+|..++|.+.+..
T Consensus 127 ~~~~~~~~~~~g~~~g~~~~~~l 149 (485)
T TIGR00711 127 AMAIWGLTVLVAPALGPTLGGWI 149 (485)
T ss_pred HHHHHHHHHHHHhhhhhccHhHh
Confidence 99999999999999999887653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.4e-06 Score=84.91 Aligned_cols=102 Identities=6% Similarity=0.011 Sum_probs=82.8
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
+...+..++.|.++||+|||+.+..+..+.+++++.....+ +.+...+..++.+++.+...+...+++.|.+|++.|++
T Consensus 57 l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (400)
T PRK11646 57 FIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH-EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR 135 (400)
T ss_pred HHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44455678899999999999999999999988888776654 44455555556666666666777888999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.|+......+|..++|.+.++.
T Consensus 136 a~~~~~~~~~~g~~ig~~l~g~l 158 (400)
T PRK11646 136 FFSLLMMQDSAGAVIGALLGSWL 158 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=86.56 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=85.2
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|++.||+|||+.+..+..+.+++.++....+ +.+...+..++.+++.+...+....+..|.+|++.|++
T Consensus 51 ~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (385)
T TIGR00710 51 LGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN-NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSR 129 (385)
T ss_pred HHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHH
Confidence 66778899999999999999999999888888887776654 34455555667777777777888899999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.|+.+....+|..++|.+....
T Consensus 130 ~~~~~~~~~~~g~~~g~~~~~~l 152 (385)
T TIGR00710 130 IYSILMPVLALAPAVAPLLGGYI 152 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.2e-06 Score=85.72 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=82.4
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|++.||+|||+.+..+..+.+++.++....++ .+...+..++.+++.+...+..+.+..|.+|++.|+.
T Consensus 49 ~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~ 127 (392)
T PRK10473 49 AGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET-SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAK 127 (392)
T ss_pred HHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHH
Confidence 566778889999999999999999998888888777665543 3344444556667777767788899999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.|+.+....+|.+++|.+....
T Consensus 128 ~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 128 VLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-06 Score=83.48 Aligned_cols=136 Identities=16% Similarity=-0.005 Sum_probs=114.8
Q ss_pred chhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhh
Q psy3965 160 SYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLC 239 (535)
Q Consensus 160 ~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i 239 (535)
+......+..++|+++.|+ |.||+|-|+++..++++..+.++...+...-..+.++-.+.|+..|+....+-+|.
T Consensus 292 l~g~~~~vvA~lg~ii~g~-----Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~ 366 (438)
T COG2270 292 LIGIALSVVAALGAIIAGF-----LDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYL 366 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445667788899999999 99999999999999999999999888888777888888999999999999999999
Q ss_pred cccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHhhhcccc
Q psy3965 240 MEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI----HSWRILQWVITAPTIIFLILWWCIPES 300 (535)
Q Consensus 240 ~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----~~Wr~~~~~~~~~~l~~~~~~~~lpes 300 (535)
.+..|+++-++..++++...-.+..++|.+...+ .+-|.-+....++.++.++..+.+|+.
T Consensus 367 ~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 367 ARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999888899998877665 366776666665555556666666654
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4e-06 Score=86.21 Aligned_cols=136 Identities=8% Similarity=-0.021 Sum_probs=80.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchh----hccchHHHHHHHHHHHhhhhhhhHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV----AASPWFEGYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~----~~~~s~~~l~~~r~l~G~~~~~~~~~ 234 (535)
++..++..++..+++++.|+ ++||+|||++++++.++.++..+.. ...++....+..-++.+++.+...+.
T Consensus 282 ~~~~~i~~~~~~i~~~~~G~-----l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
T PRK10406 282 SGIMTAALFVFMLIQPLIGA-----LSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSI 356 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677788888899 9999999998877665543333211 11223332222223233333444455
Q ss_pred HHhhhcccccCcchhhhhhhhhhhhhh-HHHHHHHHHhhhc--c-hhHHHHHHHHHHHHHHHHhhhccc
Q psy3965 235 GFVLCMEIVGGKWLTIAGISYLFPVPL-GYIAISGIAYYIH--S-WRILQWVITAPTIIFLILWWCIPE 299 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~~~~~~~l-G~~i~~~l~~~~~--~-Wr~~~~~~~~~~l~~~~~~~~lpe 299 (535)
...+..|++|++.|+...++.+....+ +....|.+...+. + |...++..++..++..+..+++++
T Consensus 357 ~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 357 SGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 677889999999999999987654332 2233555555442 3 555666555555555554444433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.2e-05 Score=83.16 Aligned_cols=104 Identities=13% Similarity=-0.058 Sum_probs=86.0
Q ss_pred HhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc--hHHHHHHHHHHHhhhhhhhHHHHHhhhccc
Q psy3965 165 SDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP--WFEGYLVLRAMLGFVCVSIVFSGFVLCMEI 242 (535)
Q Consensus 165 ~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~ 242 (535)
..++.+++.++.++ ++||+|+|+++.++.++..++.++..+.+ +++.+.+..++.|+|.+...+...++..|.
T Consensus 273 ~~~~~~~~~~l~~~-----l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~ 347 (448)
T PRK09848 273 NLVGTVASAPLVPG-----MVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADT 347 (448)
T ss_pred HHHHHHHHHHHHHH-----HHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788889999 99999999999999988888877776653 677777888899999999999999999998
Q ss_pred ccCc-------chhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 243 VGGK-------WLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 243 ~~~~-------~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
.+.+ ++|...++.+....+|..+++.+...+
T Consensus 348 ~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 348 VEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred hhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8743 458888999998889988888776543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.2e-06 Score=83.34 Aligned_cols=102 Identities=10% Similarity=-0.027 Sum_probs=84.4
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++.+++.++.|++.||+|||+.+..+..+.+++.++..+.+ +.+...+.-++.+++.+...+....+..|.+|++.|+.
T Consensus 49 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (382)
T PRK10091 49 LGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS-SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTA 127 (382)
T ss_pred HHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhH
Confidence 77888999999999999999999999999988888777654 44455556667777777766777788899999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.|+......+|..++|.+....
T Consensus 128 ~~~~~~~~~~~g~~~g~~l~~~l 150 (382)
T PRK10091 128 AVAGMVSGMTVANLLGIPLGTYL 150 (382)
T ss_pred HHHHHHHHHHHHHHHhccHHHHH
Confidence 99999988889999988876543
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.5e-07 Score=84.83 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=82.4
Q ss_pred CceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhh
Q psy3965 427 PGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMR 506 (535)
Q Consensus 427 ~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 506 (535)
+++..++.+...|.++||+|||.++.++.+..++..++.+...+ ....+..=++++..-+-. ++..++++|+++++.|
T Consensus 77 F~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~-F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~r 154 (451)
T KOG2615|consen 77 FSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN-FAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKYR 154 (451)
T ss_pred HHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhccCch-HHHHHHHHhhcChhhc
Confidence 34788899999999999999999999999888886666655432 222222234555555443 7788999999999999
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 507 NLGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 507 ~~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
+.+++.+++...+|.++||.+.+....
T Consensus 155 ~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 155 PLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred cceeeeeehhhhcchhhcchhhhHHHh
Confidence 999999999999999999999876543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-06 Score=88.11 Aligned_cols=103 Identities=7% Similarity=-0.008 Sum_probs=81.2
Q ss_pred eeehhhHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchh---
Q psy3965 429 IVEIPAIAMSILILLK-MGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTK--- 504 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--- 504 (535)
++..++.+++|++.|| +|||+.+.++.++.+++.+++.+.++ .+......++.+++.+...+....+.++.+|++
T Consensus 59 ~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~-~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~ 137 (475)
T TIGR00924 59 ALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIY-PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP 137 (475)
T ss_pred HHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhccc-HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence 6677889999999999 89999999999999988887776543 333333444455666666677788888999875
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 505 MRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 505 ~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
.|+.+.++.....++|++++|.+.....
T Consensus 138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 138 RRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred cccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999999999999887543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.8e-06 Score=85.07 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=100.0
Q ss_pred cchhHHHhhhhhhcceee----ccCCccccccccCchhhHHHHHHHHHHhhchhhccch---------HHHHHHHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYT----GQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPW---------FEGYLVLRAMLG 225 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~----G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s---------~~~l~~~r~l~G 225 (535)
++.+++..+...+..++. ++ +.+|++.++.+.+++++.+++.+..+++.+ .+.+++.+++.|
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~-----l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~ 393 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNK-----MGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQS 393 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH-----hCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Confidence 566666666666666665 66 888888888999999999999888776655 468899999999
Q ss_pred hhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-------------cchhHHHHHHHHHHHH
Q psy3965 226 FVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-------------HSWRILQWVITAPTII 289 (535)
Q Consensus 226 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-------------~~Wr~~~~~~~~~~l~ 289 (535)
+|.....|....++.+..|++.||+.++.+..+..+|..++..+.... .+.++.|...++.+++
T Consensus 394 ~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 470 (500)
T PRK09584 394 IGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAV 470 (500)
T ss_pred HHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888888887766421 1245667666655544
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=81.08 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=75.5
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++.+++.++.|++.||+|||+.+..+.++.+++.++..+.+.+.+...+..++.+++.+ .++....++.|.+|++.|+.
T Consensus 48 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~ 126 (366)
T TIGR00886 48 LAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGT 126 (366)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhH
Confidence 67788999999999999999999999999888888777665234444444455555533 34556788899999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q psy3965 509 GVGASSVPAGVALILIPYLW 528 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~ 528 (535)
+.++......+|..+++.+.
T Consensus 127 ~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 127 ALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 99998877777766665554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.7e-06 Score=85.07 Aligned_cols=102 Identities=18% Similarity=0.020 Sum_probs=80.7
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|.++||+|||+.+..+..+.+++.++....+ +.+..++.-++.+++.+...+..+.+..|.+|++.|++
T Consensus 62 ~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
T PRK15403 62 AGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT-SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIK 140 (413)
T ss_pred HHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 66677888999999999999999999888888877776654 34444555555556555545566788889999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
++++.+....+|..++|.+....
T Consensus 141 ~~~~~~~~~~~~~~~g~~lg~~l 163 (413)
T PRK15403 141 LMAIITSIVLVAPIIGPLSGAAL 163 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887643
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.4e-06 Score=84.49 Aligned_cols=102 Identities=14% Similarity=-0.032 Sum_probs=80.9
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|.+.||+|||+.+..+..+.+++.+.....+ +.+..+...++.+++.+...+.......|.+|++.|..
T Consensus 59 ~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (406)
T PRK15402 59 AGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ-SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIK 137 (406)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHH
Confidence 66778889999999999999999999888888877766654 34455555566666666666777888899999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.++......++..++|.+....
T Consensus 138 ~~~~~~~~~~~~~~~g~~i~~~l 160 (406)
T PRK15402 138 ITALMANVALLAPLLGPLVGAAL 160 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888886543
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=80.71 Aligned_cols=138 Identities=14% Similarity=0.024 Sum_probs=95.6
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc----hH---H--HHHHHHHHHhhhh-
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP----WF---E--GYLVLRAMLGFVC- 228 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~----s~---~--~l~~~r~l~G~~~- 228 (535)
.++.....+-..+..+++.. +.||+|||+.++.+..+..+..++..... .. . ..+++.++..++.
T Consensus 308 ~~an~~~g~v~~~~t~~~~~-----lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~ 382 (485)
T KOG0569|consen 308 QYANLGIGIVNLLSTLVSPF-----LIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFA 382 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence 45556677777888888999 99999999999999999988888775541 11 1 1233444433333
Q ss_pred hhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc-chh-HHHHHHHHHHHHH-HHHhhhcccch
Q psy3965 229 VSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH-SWR-ILQWVITAPTIIF-LILWWCIPESP 301 (535)
Q Consensus 229 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~-~Wr-~~~~~~~~~~l~~-~~~~~~lpesp 301 (535)
-+..|..+-+.+|.+|++.|..+.++.....-+...+....-..+. -|- +.|+...+++++. +..++.+||+.
T Consensus 383 ~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 383 IGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred cCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccC
Confidence 2335777888999999999999988887776666665544443332 122 5666677777664 45577899983
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.6e-06 Score=82.55 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=75.4
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAF----PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTK 504 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 504 (535)
+...+..+..|++.||+|.|+++.++.++.++..+...+. .++.+..+++.++.+++ +..++.....+++.+|++
T Consensus 81 l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~ 159 (462)
T PRK15034 81 VSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA 159 (462)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh
Confidence 5666778888999999999999999998888888777764 13445556666666665 557788888999999999
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHH
Q psy3965 505 MRNLGVGASSVPAGVALILIPYL 527 (535)
Q Consensus 505 ~r~~~~g~~~~~~~ig~~i~P~i 527 (535)
.||++.|+....+.+|..+++++
T Consensus 160 ~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 160 KQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HhHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999976666666544443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=81.52 Aligned_cols=129 Identities=15% Similarity=-0.004 Sum_probs=92.4
Q ss_pred cchhHHHh-hhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhc------cchHHHHHHHHHHHhhhhhhh
Q psy3965 159 HSYEMQSD-FDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAA------SPWFEGYLVLRAMLGFVCVSI 231 (535)
Q Consensus 159 ~~~~s~~~-~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~------~~s~~~l~~~r~l~G~~~~~~ 231 (535)
++...... .+..++.++.|+ +.||+|+|+.+..+.++.++..+.... .++...+.....+.+++.+..
T Consensus 246 g~~~~~~~~~~~~~g~~~~g~-----l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 320 (390)
T TIGR02718 246 GRLGMAGGAVTVLLGCGGGAW-----LVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGIT 320 (390)
T ss_pred HHHHhHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHH
Confidence 34444433 466677888999 999999999998877665333322211 233444455556667777777
Q ss_pred HHHHHhhhcccccC-cchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHH
Q psy3965 232 VFSGFVLCMEIVGG-KWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLI 292 (535)
Q Consensus 232 ~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~ 292 (535)
.+.....+.+..++ ++++...++.+....+|..++|.+++.+. ||+..|++.++..++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 321 SVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 78888887777776 88999999999999999999999988763 778888877766555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.5e-06 Score=84.95 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=82.0
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhccccc-chhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELF-PTKMRN 507 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~ 507 (535)
++...+.+..|++.||+|||+.+..+..+.+++.++....+ +.+..++.-++.+++.+...+.......+.+ |++.|+
T Consensus 52 l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~-~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~ 130 (495)
T PRK14995 52 LVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP-TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN 130 (495)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55567778899999999999999999999998888877654 4445555556666777776666666565554 789999
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 508 LGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 508 ~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
++.|+......+|..++|.+.++..
T Consensus 131 ~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 131 MALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987653
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.3e-06 Score=83.47 Aligned_cols=101 Identities=6% Similarity=-0.042 Sum_probs=82.0
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH--hcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTL--AFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMR 506 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 506 (535)
++..++.++.|.+.||+|||+++..+..+.+++.++.. ...++.+...+..++.+++.+...+....++.|..|.+.|
T Consensus 72 ~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~ 151 (438)
T PRK10133 72 FGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSG 151 (438)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhH
Confidence 77888899999999999999999999999888887653 2234455666667777888888888888888888777777
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHh
Q psy3965 507 NLGVGASSVPAGVALILIPYLWD 529 (535)
Q Consensus 507 ~~~~g~~~~~~~ig~~i~P~i~~ 529 (535)
...+++.+....+|..++|.+..
T Consensus 152 ~~~~s~~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 152 HFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999988754
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-05 Score=80.78 Aligned_cols=102 Identities=6% Similarity=-0.074 Sum_probs=85.3
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAF--PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMR 506 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 506 (535)
++.+++.+..+++.||+|||+.+..+..+.+++.++.... .++.+..+...++.+++.+...+....+..+..|++.|
T Consensus 49 ~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~ 128 (410)
T TIGR00885 49 GGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTA 128 (410)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHH
Confidence 6778889999999999999999999999988888775443 23445566667778888888888888888899999999
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 507 NLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 507 ~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
++..++.+.+..+|..++|.+...
T Consensus 129 ~~~~~~~~~~~~lG~~~g~~i~~~ 152 (410)
T TIGR00885 129 TRRLNLAQSFNPFGSIIGMVVAQQ 152 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988654
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=82.83 Aligned_cols=103 Identities=13% Similarity=0.006 Sum_probs=84.3
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAF-PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRN 507 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 507 (535)
++.+++.++.|++.||+|||+.+..+.++.+++.++..+. ....+..++.-++.+++.+..++....++.|.+|++.|+
T Consensus 87 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~ 166 (465)
T TIGR00894 87 YGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS 166 (465)
T ss_pred HHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH
Confidence 6777888999999999999999999988877777665433 223344555566777888888888899999999999999
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 508 LGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 508 ~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
++.|+......+|.+++|.+....
T Consensus 167 ~~~~~~~~~~~~g~~i~~~l~~~l 190 (465)
T TIGR00894 167 RLLGMSTSGFQLGTFIFLPISGWL 190 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.6e-06 Score=94.01 Aligned_cols=123 Identities=8% Similarity=-0.141 Sum_probs=99.8
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc--------------------chHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS--------------------PWFEGYL 218 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~--------------------~s~~~l~ 218 (535)
+++.+.+.+|.++|+++.|+ ++|+.++++.+..+.++.+++.+..++. ++.+.++
T Consensus 264 g~~~~~~~~g~~ig~~~~g~-----l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1140)
T PRK06814 264 TLFLAVFSVGVAVGSFLASK-----LSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRIL 338 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHH
Confidence 77788999999999999999 9999888777766666665555444432 6778888
Q ss_pred HHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc----chhHHHHHHHHH
Q psy3965 219 VLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH----SWRILQWVITAP 286 (535)
Q Consensus 219 ~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----~Wr~~~~~~~~~ 286 (535)
+..++.|++.+...+...+++.+.+|+++||+++++.+....+|..+++++.+.+. ++...+++.++.
T Consensus 339 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 339 IDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998888776653 455555544443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.5e-05 Score=81.96 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHHHHHHHhhhhhhhcccccchh
Q psy3965 432 IPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSW-------MTISLAMIGKFAISSSNVVMPVYTAELFPTK 504 (535)
Q Consensus 432 ~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 504 (535)
.++.++.|++.||+|||+.+..+..+.+++.++..+.++... ..++.-++.+++.+..++....+..|.+|++
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~ 149 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG 149 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence 467788999999999999999999998888888877654321 1233344556666666677778999999999
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 505 MRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 505 ~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
.|+.+.++......+|..++|.+...
T Consensus 150 ~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 150 RKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877777766665443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.3e-05 Score=80.36 Aligned_cols=110 Identities=8% Similarity=-0.055 Sum_probs=84.3
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhc-----cchHHHHHHHHHHHhhhhhhhHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAA-----SPWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~-----~~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
++..+...++.+++.+++++ ++||+|+|+.+.++.++..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 269 ~~~~~~~~i~~ii~~~~~~~-----l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 269 PYYLSYAGAANLVTLILFPR-----LVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 44555566788889999999 999999999999888776655554322 35667777788899999999999
Q ss_pred HHHhhhccccc-------CcchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 234 SGFVLCMEIVG-------GKWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 234 ~~~~~i~e~~~-------~~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
...+++.|..+ ++..|...+......-+|..+++.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999966 33346678888888888888877766544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=73.43 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=62.8
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHH---HHHhcCCCh------HHHHHHHHHHHHHHHHHhhhhhhhccc
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACL---VTLAFPQGS------WMTISLAMIGKFAISSSNVVMPVYTAE 499 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~e 499 (535)
+.++.+.++..++.+|+|..+.-.++......++. ...+.+... ...+....+..+|.=..--....+..|
T Consensus 304 v~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe 383 (432)
T PF06963_consen 304 VFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQE 383 (432)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcc
Confidence 67888999999999999987776666554333222 222233321 122223334455444433445678899
Q ss_pred ccchhhhhhHHHHHHHHHhHHHHHHHH
Q psy3965 500 LFPTKMRNLGVGASSVPAGVALILIPY 526 (535)
Q Consensus 500 ~~p~~~r~~~~g~~~~~~~ig~~i~P~ 526 (535)
..|++.||...|+-+...++...+.-.
T Consensus 384 ~V~~~~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 384 NVPESERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred cCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887776655433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.5e-05 Score=80.24 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=84.3
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|.+.||+|||+.+..+.++.+++.++....++ .+......++.+++.+...+....+..|.+|++.|++
T Consensus 37 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (377)
T PRK11102 37 LGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT-IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSR 115 (377)
T ss_pred HHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 667788999999999999999999999888888877776543 4455555666667777777788889999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.++.+....+|..++|.+....
T Consensus 116 ~~~~~~~~~~~g~~~~~~~~~~l 138 (377)
T PRK11102 116 MMSFVTLVMTIAPLLAPIIGGWL 138 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.2e-05 Score=80.60 Aligned_cols=110 Identities=11% Similarity=0.006 Sum_probs=95.9
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc--hHHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP--WFEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--s~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
+....+..++.+++.+++++ ++||+|+|+.+..+.++.+++.++..+.+ +.+.+++.-++.|++.+.......
T Consensus 263 ~~~~~~~~~~~~v~~~~~~~-----l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~ 337 (428)
T PF13347_consen 263 SIFMLIFFVASIVGSPLWGR-----LSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPW 337 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccc
Confidence 45566889999999999999 99999999999999999999999988886 999999999999999999999999
Q ss_pred hhhcccccC-------cchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 237 VLCMEIVGG-------KWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 237 ~~i~e~~~~-------~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
++++|..+. ++.|...+......-+|..+++.+...+
T Consensus 338 a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 338 AMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred cccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999873 3347888888888888888877766544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=81.57 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=79.9
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
+...++.++.|+++||+|||+.+..+..+..++.+.....+ +.+...+..++.+++.+...+....+..|.++.+.++.
T Consensus 54 ~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK11652 54 LTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH-SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRH 132 (394)
T ss_pred HHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHH
Confidence 66778889999999999999999998888887777666543 34445555556666666656666778889999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.++.+....++..++|.+....
T Consensus 133 ~~~~~~~~~~~~~~~g~~i~~~l 155 (394)
T PRK11652 133 ANSLLNMGILVSPLLAPLIGGLL 155 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888887654
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.6e-06 Score=85.25 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=121.3
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccC--chhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFG--RKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~G--rr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
+.+.++..+...+|-++.|+ ++|+.. ++.+..+++++.+++.+.++++++++.+...-.+.|++.|.......
T Consensus 336 a~l~Siigi~~i~gRi~~G~-----laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~ 410 (509)
T KOG2504|consen 336 AFLLSIIGVSDIIGRIILGL-----LADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTP 410 (509)
T ss_pred HHHHHHHHHhhhhhhhhhhh-----hcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999 999988 56677788888899999999999999999999999999999999999
Q ss_pred hhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc----chhHHHHHHHHHHHHHHHHhhhcc
Q psy3965 237 VLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH----SWRILQWVITAPTIIFLILWWCIP 298 (535)
Q Consensus 237 ~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----~Wr~~~~~~~~~~l~~~~~~~~lp 298 (535)
..+.|+.+.++-..+.++.....+++.+++|++++.+. +|...|+..++..++....++..|
T Consensus 411 ~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 411 VILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999988763 588899998888777777766665
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.4e-05 Score=75.98 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=110.4
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhc-cchHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAA-SPWFEGYLVLRA 222 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~-~~s~~~l~~~r~ 222 (535)
.|.+++..++ +++.-+|.++..+|.++.|+ ++|| +.|+.+.....+..+..+...+ .++.+..++.-+
T Consensus 235 ~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr-----l~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~ 308 (394)
T COG2814 235 RPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGR-----LADR-GPRRALIAALLLLALALLALTFTGASPALALALLF 308 (394)
T ss_pred HHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhh-----hccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4555555544 78889999999999999999 9999 9999998887777777666554 456667777777
Q ss_pred HHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhh
Q psy3965 223 MLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWW 295 (535)
Q Consensus 223 l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~ 295 (535)
+.|++...........+++ ..++.+..+.++....+++|..+|..+++.+ .++....++.++..++.++..+
T Consensus 309 ~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 309 LWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLAL 383 (394)
T ss_pred HHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 7888877777777777777 5578899999999999999999999998877 3788888888887777555543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=82.63 Aligned_cols=137 Identities=13% Similarity=-0.003 Sum_probs=85.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHH---Hhhchhhc--cchHHHHHHHHHHHhhhhhhhHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQL---VLGAGVAA--SPWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~---i~~~~~~~--~~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
++..+.+.++..++.++.|+ ++||+|+|+....+..+.. ++.+.... ..+.+...+..++.|++..+...
T Consensus 290 ~~~~~~~~~~~~ig~~~~g~-----l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 364 (438)
T TIGR00712 290 SWAYFLYEYAGIPGTLLCGW-----MSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVM 364 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHH
Confidence 56677788889999999999 9999975432222322211 11111112 22344444445555654333333
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhhH-HHHHHHHHhhhc---chhHHHHHHHHHHHH-HHHHhhhcccc
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLG-YIAISGIAYYIH---SWRILQWVITAPTII-FLILWWCIPES 300 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG-~~i~~~l~~~~~---~Wr~~~~~~~~~~l~-~~~~~~~lpes 300 (535)
.......|.+|+++|+.+.++.+....+| .+++|.+.+.+. +|...+++.....++ .....+.+||.
T Consensus 365 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 365 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33346779999999999999998776665 567777766652 788888776665555 44445666764
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.4e-06 Score=85.81 Aligned_cols=97 Identities=12% Similarity=-0.037 Sum_probs=82.1
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|++.||+|||+.+..+.++.+++.++..+.+ +.+...+..++.+++.+...+....+..|.+|++.|+.
T Consensus 41 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~ 119 (379)
T TIGR00881 41 IAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGT 119 (379)
T ss_pred HHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhhee
Confidence 66778889999999999999999999988888888777665 34455556666677777777888899999999999999
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy3965 509 GVGASSVPAGVALILIPY 526 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~ 526 (535)
+.|+.+....+|.+++|.
T Consensus 120 ~~~~~~~~~~~g~~~~~~ 137 (379)
T TIGR00881 120 WVSFWNCSHNVGGGLLPP 137 (379)
T ss_pred eEeehhccchhHHHHHHH
Confidence 999999999999999993
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.5e-05 Score=80.59 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=83.3
Q ss_pred chhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhc--cchHHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 160 SYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAA--SPWFEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 160 ~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~--~~s~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
.......++.+++.+++++ ++||+|+|+.+..+.++..+..+...+ .++.+.+++..++.|++.+...+...+
T Consensus 268 ~~~~~~~i~~ii~~~~~~~-----l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 268 LFLVTGMIAGLFGALLSER-----LLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777788889999 999999999999888766654443322 357778888889999999999999999
Q ss_pred hhcccccC-------cchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 238 LCMEIVGG-------KWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 238 ~i~e~~~~-------~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
+++|..+. +..|...+.......+|..+++.+++.+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998862 2335667777777788888888776654
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00022 Score=72.77 Aligned_cols=110 Identities=7% Similarity=-0.089 Sum_probs=81.0
Q ss_pred cchhHHHhhhhhhc-ceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc----c---------------------
Q psy3965 159 HSYEMQSDFDVQLS-KLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS----P--------------------- 212 (535)
Q Consensus 159 ~~~~s~~~~g~~ig-~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~----~--------------------- 212 (535)
.++-+...+..++. .++.++ +++|++|++++-.....+....++.++. +
T Consensus 46 ~fLk~~~~lp~~~~~~~ly~~-----l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 46 PFLKTWVVVPMAVIFMLIYTK-----LSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 45556555655555 788899 9999999999988777666666555543 1
Q ss_pred ------hHHHHHHHHHHHhhhhhhhHH-HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 213 ------WFEGYLVLRAMLGFVCVSIVF-SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 213 ------s~~~l~~~r~l~G~~~~~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
+.|...+......+-...... .-..++.|.+..++-.+..+++..+.++|.++++.+...+
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444445555555555554 7788999999999999999999999999999999776554
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.7e-06 Score=81.33 Aligned_cols=88 Identities=11% Similarity=-0.054 Sum_probs=75.2
Q ss_pred hhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc-----------chHHHHHHHHHHHhhhhhhhHHHH
Q psy3965 167 FDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS-----------PWFEGYLVLRAMLGFVCVSIVFSG 235 (535)
Q Consensus 167 ~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~-----------~s~~~l~~~r~l~G~~~~~~~~~~ 235 (535)
++..++.+++|+ +.||+|||+.+..+.++.+++..+..+. ++++.+..+.++.+++.+...+..
T Consensus 256 ~~~~~g~~~~g~-----l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 330 (356)
T TIGR00901 256 LGAILGGLIGGI-----IMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAF 330 (356)
T ss_pred HHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 566789999999 9999999999998888887776655442 456778888999999999999999
Q ss_pred HhhhcccccCcchhhhhhhhhhhh
Q psy3965 236 FVLCMEIVGGKWLTIAGISYLFPV 259 (535)
Q Consensus 236 ~~~i~e~~~~~~r~~~~~~~~~~~ 259 (535)
.+++.|.+|+++|++..++.+...
T Consensus 331 ~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 331 VAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHH
Confidence 999999999999999999877654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.9e-05 Score=77.15 Aligned_cols=100 Identities=12% Similarity=0.135 Sum_probs=86.8
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
.+..+..+.+|++.||+|.|+++.++.+..++..+++++..+ .+.+.++-++.+++.+..+ ..+.++...+|++.|++
T Consensus 73 ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S-l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~r 150 (511)
T TIGR00806 73 YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS-VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQR 150 (511)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHH
Confidence 667788899999999999999999999999998888887543 4455666677778888887 88899999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l 530 (535)
+.|+.+....+|.+++|.+..+
T Consensus 151 atsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 151 AAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.2e-05 Score=76.68 Aligned_cols=123 Identities=9% Similarity=-0.036 Sum_probs=83.3
Q ss_pred hcceeeccCCccccccccCc---hhhHHH-HHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCc
Q psy3965 171 LSKLYTGQSNLDDTGSRFGR---KRALMG-SLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGK 246 (535)
Q Consensus 171 ig~~~~G~~~~~~l~Dr~Gr---r~~l~~-~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~ 246 (535)
.|.+..++ ++||..| |+.... ..++.++...+.+++.+.....+.-++.|++.....+...++..|.+|++
T Consensus 238 ~g~~g~~~-----~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~ 312 (368)
T TIGR00903 238 AGLIGVAV-----IPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE 312 (368)
T ss_pred HHHHHHHH-----hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh
Confidence 33333467 7777654 333332 34444444444455555555555667777877778888889999999999
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHHHhhhcc
Q psy3965 247 WLTIAGISYLFPVPLGYIAISGIAYYI-HSWRILQWVITAPTIIFLILWWCIP 298 (535)
Q Consensus 247 ~r~~~~~~~~~~~~lG~~i~~~l~~~~-~~Wr~~~~~~~~~~l~~~~~~~~lp 298 (535)
.|+.+.++.+....+|.+++|.+...+ .+-+..|.+.+++.++..+..+.++
T Consensus 313 ~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~ 365 (368)
T TIGR00903 313 LHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLP 365 (368)
T ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999988887766544 4777777777777666554444334
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.6e-05 Score=78.35 Aligned_cols=137 Identities=17% Similarity=0.131 Sum_probs=88.7
Q ss_pred eeccCCC-----cchhHHH-hhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchh---hcc-chHHHHHHHH
Q psy3965 152 IISEPES-----HSYEMQS-DFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV---AAS-PWFEGYLVLR 221 (535)
Q Consensus 152 i~~~~~l-----~~~~s~~-~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~~-~s~~~l~~~r 221 (535)
+.+++++ ++..+.. .++..+|.++.|+ +.||+|||+.+..+.++..+..+.. ++. ++.+.+.+.-
T Consensus 236 l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~-----l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 310 (402)
T PRK11902 236 LIRGAGFSAGEVGIVNKTLGLAATIVGALAGGT-----LMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI 310 (402)
T ss_pred HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 4455555 3443332 3457888999999 9999999998887776665554333 343 4555555544
Q ss_pred ----HHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHh
Q psy3965 222 ----AMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILW 294 (535)
Q Consensus 222 ----~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~ 294 (535)
+..|++.+...+....++.+..|.+.++...+ ..++|.++++.+++.+ .||+..|.+.++.+++.++..
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 311 GIENLCGGMGTAAFVALLMALCNRSFSATQYALLSA----LASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 45666677778888888888888776654333 3345555444455444 389999999888777765554
Q ss_pred hhc
Q psy3965 295 WCI 297 (535)
Q Consensus 295 ~~l 297 (535)
+..
T Consensus 387 ~~~ 389 (402)
T PRK11902 387 WLM 389 (402)
T ss_pred HHH
Confidence 433
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.7e-05 Score=82.20 Aligned_cols=99 Identities=17% Similarity=0.117 Sum_probs=83.0
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++.++|.++.|.++||+|||+++.++.++..++.++..+.++ .+...++-++.+++.+....+.+.+..|.++++.|+.
T Consensus 129 ~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~-~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~ 207 (521)
T KOG0255|consen 129 LGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN-YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGL 207 (521)
T ss_pred HHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhH
Confidence 778899999999999999999999999999998877777654 4577777788888888888999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHh
Q psy3965 509 GVGASSVPAGVALILIPYLWD 529 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~ 529 (535)
+..+ ..+...++.++|.+..
T Consensus 208 ~~~~-~~~~~~~~~~~~~~~a 227 (521)
T KOG0255|consen 208 ALTL-GGFFFVGGLMLPAGAA 227 (521)
T ss_pred HHHH-HHHHHHHHHHHHHHHH
Confidence 9999 6666666655555443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.7e-05 Score=78.19 Aligned_cols=102 Identities=13% Similarity=0.065 Sum_probs=78.7
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|++.||+|||+.+..+..+..++.++..+.+ +.+...+..++.+++.+...+....+..|.+|++.++.
T Consensus 52 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (401)
T PRK11043 52 AGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE-SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANR 130 (401)
T ss_pred HHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHH
Confidence 66778899999999999999999998888887777766654 33344444455556655555566678889999998888
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
..+..+....++..++|.+....
T Consensus 131 ~~~~~~~~~~~~~~~g~~i~~~l 153 (401)
T PRK11043 131 VFATIMPLVALSPALAPLLGAWL 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88988888888888888877653
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00015 Score=72.37 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHH-HHHhhhhhc
Q psy3965 478 LAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIP-YLWDMVNSF 534 (535)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P-~i~~l~~~~ 534 (535)
.-++..+.....+....++-+.+..+..-|+.+.+.|+..++|+-.-. ++..+.+.+
T Consensus 411 ~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 411 QHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 345566666667777888899999999999999999999999875544 334444443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00028 Score=75.46 Aligned_cols=127 Identities=12% Similarity=0.009 Sum_probs=94.5
Q ss_pred HHHhhhhhhcceeeccCCccccccc-cCchhhHHHHHHHHHHhhchhhccch--------HHHHHHHHHHHhhhhhhhHH
Q psy3965 163 MQSDFDVQLSKLYTGQSNLDDTGSR-FGRKRALMGSLVCQLVLGAGVAASPW--------FEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 163 s~~~~g~~ig~~~~G~~~~~~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~s--------~~~l~~~r~l~G~~~~~~~~ 233 (535)
..+....-+..+++|. ++|+ +||++.++++.++..++.++.+++.. ...++++-.+.++|.|++-+
T Consensus 30 ~~f~~l~yl~pilGg~-----iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp 104 (654)
T TIGR00926 30 HTFTYLCYLTPLIGAI-----IADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKP 104 (654)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhcccccc
Confidence 3444444555677788 9995 89999999999999999887776421 23466778888899999999
Q ss_pred HHHhhhcccccCcc---hhhhhhhhhhhhhhHHHHHHHHHhhhc----------chhHHHHHHHHHHHHHHHHh
Q psy3965 234 SGFVLCMEIVGGKW---LTIAGISYLFPVPLGYIAISGIAYYIH----------SWRILQWVITAPTIIFLILW 294 (535)
Q Consensus 234 ~~~~~i~e~~~~~~---r~~~~~~~~~~~~lG~~i~~~l~~~~~----------~Wr~~~~~~~~~~l~~~~~~ 294 (535)
...+...|.+++++ |-....++..+.++|.++++.+...+. +|...|.+.++..++.++..
T Consensus 105 ~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 105 CVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred CchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999887543 456677777788888888877765553 48888888777666654443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00026 Score=72.10 Aligned_cols=60 Identities=13% Similarity=-0.018 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 472 SWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
.+..+++.++.++..|...+....+..+..+++.|..+-.+...+-.+|-.+|..+..+.
T Consensus 372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777888888888888889999999999999998888888888888887775543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.5e-05 Score=75.31 Aligned_cols=136 Identities=12% Similarity=0.098 Sum_probs=110.9
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
|.+.++.-+.-.+.-.+..+ +.+|+|.|+.++++..+..+=.++++++++.+.+.+.+.+.|+-.+........|
T Consensus 262 G~l~s~~v~~E~~~m~~~p~-----li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 262 GYLWSVQVFLEALMMFFSPW-----LINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777888888889 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcchhhhhhh-hhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 239 CMEIVGGKWLTIAGIS-YLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~-~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
+.+.+|+|..+....+ .+.+..+|..+.+.+++.+. |.+..|++.+.+.+...+. .+.++.
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 9999999988777666 47888899988888777763 6788888888776664444 454543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.9e-05 Score=79.82 Aligned_cols=103 Identities=8% Similarity=0.003 Sum_probs=78.3
Q ss_pred eehhhHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchh--hh
Q psy3965 430 VEIPAIAMSILILLK-MGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTK--MR 506 (535)
Q Consensus 430 ~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r 506 (535)
......+++|+++|| +|||+.+.++.++.+++.+...+..+......+...+.+++.+...+....++.|.+|++ .|
T Consensus 62 ~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~ 141 (489)
T PRK10207 62 LVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRL 141 (489)
T ss_pred HHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhh
Confidence 334455689999999 999999999999999988877765443333333344455666766777889999999887 45
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 507 NLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 507 ~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
+.++++.....++|.+++|.+.++..
T Consensus 142 ~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 142 DGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999998888776543
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.7e-05 Score=75.25 Aligned_cols=134 Identities=13% Similarity=0.000 Sum_probs=109.2
Q ss_pred cCCCcchhHHHhhhhhhcceeeccCCccccccccC--chhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhH
Q psy3965 155 EPESHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFG--RKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIV 232 (535)
Q Consensus 155 ~~~l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~G--rr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~ 232 (535)
.|.+++..--..+.+.+|..+.|. ++||++ |-.....++++.++......+++++.++.+-++..|++.+...
T Consensus 305 ~w~~G~~fLp~~~~y~ig~~lfg~-----la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~d 379 (464)
T KOG3764|consen 305 GWEVGLAFLPASLSYAIGTNLFGK-----LADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLAD 379 (464)
T ss_pred CcceeeeecccccchhccCchHHH-----HHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHH
Confidence 455566666678899999999999 999999 6555566778888888888999999999999999999988888
Q ss_pred HHHHhhhcccccCcc------hhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHH
Q psy3965 233 FSGFVLCMEIVGGKW------LTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLIL 293 (535)
Q Consensus 233 ~~~~~~i~e~~~~~~------r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~ 293 (535)
........+..+.++ -|...++...++++|..++|.+++.+. |.+|...+.++..++...+
T Consensus 380 asl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapv 449 (464)
T KOG3764|consen 380 ASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPV 449 (464)
T ss_pred HHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHH
Confidence 777776666665443 367888999999999999999998874 8899888888777764433
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=5e-06 Score=81.90 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=85.4
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++.++++++.|++.||++|++++.++..+..++.++..+. +..|.++++-.+.+++.+...++...+++|.+|...|++
T Consensus 79 v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs-~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~ 157 (493)
T KOG1330|consen 79 VVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS-NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSR 157 (493)
T ss_pred HHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhH
Confidence 7788899999999999999999999999999988888876 455777777778889998889999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHH
Q psy3965 509 GVGASSVPAGVALILIP 525 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P 525 (535)
.+++.++...+|+++|-
T Consensus 158 ~~~ify~~ipvGsglG~ 174 (493)
T KOG1330|consen 158 VLGIFYFAIPVGSGLGY 174 (493)
T ss_pred HHHHhhhhcccccceeE
Confidence 99999999988877653
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.85 E-value=4e-05 Score=74.82 Aligned_cols=115 Identities=10% Similarity=0.037 Sum_probs=88.1
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.+..+.++|.++.++ +.||+|+|+.+.++..+..++.++....++...+ .+-++.|++.+..+|...+.
T Consensus 181 ~~~~s~~~~~~~iGr~~~~~-----l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~ 254 (310)
T TIGR01272 181 AHFTAYTWGGAMVGRFIGSA-----VMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSL 254 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999 9999999999988888888877666665544333 45668999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHH
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQW 281 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~ 281 (535)
..+..|++ .+.+.++. ....+|.++.|.+.+.+. +.+..++
T Consensus 255 a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 255 ALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred HHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 98888754 44555565 445678888887666553 5555555
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.1e-05 Score=83.07 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=83.3
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC---------------------------------------
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFP--------------------------------------- 469 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~--------------------------------------- 469 (535)
++.+++.++.+++.||.+||+.+.++.++.+++.++..+.+
T Consensus 79 i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 158 (633)
T TIGR00805 79 IGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQC 158 (633)
T ss_pred HHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccc
Confidence 77788899999999999999999999999999888776531
Q ss_pred ----------C-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 470 ----------Q-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 470 ----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
. .....++.-++.+++.+..++...+++.|.+|++.|+...|+......+|..++|.+.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l 231 (633)
T TIGR00805 159 PSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFC 231 (633)
T ss_pred ccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 0 0122334455666777777788889999999999999999999999999999998887653
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.5e-05 Score=79.86 Aligned_cols=136 Identities=7% Similarity=-0.142 Sum_probs=105.5
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc----------chHHHHHHHHHHHhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS----------PWFEGYLVLRAMLGFVC 228 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~----------~s~~~l~~~r~l~G~~~ 228 (535)
|+......++.++|....+. +.+|++.|+++.++.++.+++.+..... ++.+.+...-++.+++.
T Consensus 291 G~~~~~~~v~~i~g~~~~~~-----~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~ 365 (468)
T TIGR00788 291 GMSKVVGNLGSLCGVGGYDR-----FLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLA 365 (468)
T ss_pred hhHHHHHHHHHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHH
Confidence 67777788999999999999 9999999999999999999887654311 34445666678899999
Q ss_pred hhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc--------chhHHHHH---HHHHHHHHHHHhhhc
Q psy3965 229 VSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH--------SWRILQWV---ITAPTIIFLILWWCI 297 (535)
Q Consensus 229 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--------~Wr~~~~~---~~~~~l~~~~~~~~l 297 (535)
+....+...++.+..|+++++...++.+...++|..+++.++..+. +.+..+.. ..++.++.+...+++
T Consensus 366 g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~ll 445 (468)
T TIGR00788 366 QLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLL 445 (468)
T ss_pred HHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998887762 13333222 333444444444577
Q ss_pred cc
Q psy3965 298 PE 299 (535)
Q Consensus 298 pe 299 (535)
|+
T Consensus 446 P~ 447 (468)
T TIGR00788 446 PR 447 (468)
T ss_pred CC
Confidence 85
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=73.97 Aligned_cols=132 Identities=17% Similarity=0.048 Sum_probs=99.5
Q ss_pred HHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc-chHHHHHH----HHHHHhhhhhhhHHHHHh
Q psy3965 163 MQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS-PWFEGYLV----LRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 163 s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~-~s~~~l~~----~r~l~G~~~~~~~~~~~~ 237 (535)
++..++-++.-...++ +..|+|.|++++++.+..++=..+.+.. ++.+...+ ...+.|+..+....++..
T Consensus 250 ~l~~~aEi~~f~~~~~-----~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~ 324 (400)
T PF03825_consen 250 ALGVVAEIPFFFFSGR-----FLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVR 324 (400)
T ss_pred HHHHHHHHHHHHHHHH-----HHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444444556667788 9999999999999999999888888877 55444333 345799999999999999
Q ss_pred hhcccccCcchhhhhhhhhh-hhhhHHHHHHHHHhhhc---------chhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 238 LCMEIVGGKWLTIAGISYLF-PVPLGYIAISGIAYYIH---------SWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 238 ~i~e~~~~~~r~~~~~~~~~-~~~lG~~i~~~l~~~~~---------~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
|+.+..|++.|+++.+++.. ..++|..++..+++.+. .|...+.+.++..++..++ +++.+|
T Consensus 325 yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 325 YIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999998776 56899999999888773 3555666666655554433 333444
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0012 Score=63.63 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=61.1
Q ss_pred ccc-----ccCchhhHHH-HHHHHHHhhchhh-----------ccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCc
Q psy3965 184 TGS-----RFGRKRALMG-SLVCQLVLGAGVA-----------ASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGK 246 (535)
Q Consensus 184 l~D-----r~Grr~~l~~-~~~~~~i~~~~~~-----------~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~ 246 (535)
+.| |+||||..++ +..+.+....+.+ -.++...+....++.-+.++....+.-.+.-....++
T Consensus 86 iVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e 165 (510)
T KOG3574|consen 86 IVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRE 165 (510)
T ss_pred hhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHh
Confidence 888 9999886543 3333333322222 2345555666667788888888888888888889999
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHH
Q psy3965 247 WLTIAGISYLFPVPLGYIAISGIA 270 (535)
Q Consensus 247 ~r~~~~~~~~~~~~lG~~i~~~l~ 270 (535)
+-|-+......+...|..++..+-
T Consensus 166 ~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 166 NLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hcCchhHHHHHHHhhhHHhhccee
Confidence 999888888888888887776554
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.4e-05 Score=76.26 Aligned_cols=109 Identities=13% Similarity=-0.100 Sum_probs=83.7
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccccc-CchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF-GRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
+...+.+.++.+++.++.|+ ++||+ +||+.+..+.++.+++.++..+.++..... .-++.|++.+...+...+
T Consensus 235 g~~~~~~~~~~i~~~~~~g~-----l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~ 308 (355)
T TIGR00896 235 GSLLALMQLAQAASALLIPA-----LARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALT 308 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHH-----HHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHH
Confidence 67788899999999999999 99999 567777778788777777666665433322 456789999998888877
Q ss_pred hhccccc-CcchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 238 LCMEIVG-GKWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 238 ~i~e~~~-~~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 309 LIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765554 56668888888777777888888777665
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.72 E-value=7.8e-05 Score=63.92 Aligned_cols=107 Identities=11% Similarity=-0.032 Sum_probs=89.7
Q ss_pred hhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhc
Q psy3965 161 YEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCM 240 (535)
Q Consensus 161 ~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~ 240 (535)
..++.+....+++++.+. +.+++|.|+.++++.+.+.+-... -+-++.+.++.+-.+.|++.+..++....++.
T Consensus 42 slai~Y~~~~~s~l~~P~-----iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt 115 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPS-----IVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLT 115 (156)
T ss_pred HHHHHHHHHHHHHHhHHH-----HHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence 345666777788888888 999999999999999998865544 35678889999999999999999999999999
Q ss_pred ccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 241 EIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 241 e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
+..+++.|++..++.......+.++|.++..++
T Consensus 116 ~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 116 SYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888777777777777665554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0001 Score=77.35 Aligned_cols=96 Identities=11% Similarity=-0.005 Sum_probs=74.6
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 434 AIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFP-----QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 434 ~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
..++.|++.||+|+|+++.++.++.+++.++.++.. .+.+...+..++.+++.+..++.....+.+.|| +.||.
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 455789999999999999999999999988887752 244555555566677776666667777888897 67999
Q ss_pred HHHHHHHHHhHHHHH-HHHHHhh
Q psy3965 509 GVGASSVPAGVALIL-IPYLWDM 530 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i-~P~i~~l 530 (535)
+.|+......+|+++ +|+...+
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 5555444
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.3e-05 Score=72.76 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=75.3
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQG--SWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMR 506 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 506 (535)
+.+.+.++.-+++.||+|.|+....++++..+-++...+.... .|..+++.++.+++ +..+++...++++.||++++
T Consensus 60 l~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~q 138 (417)
T COG2223 60 LVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQ 138 (417)
T ss_pred HHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhh
Confidence 7778889999999999999999999999988888877766432 24444444444333 33467888999999999999
Q ss_pred hhHHHHHHHHHhHHHHHHHHHH
Q psy3965 507 NLGVGASSVPAGVALILIPYLW 528 (535)
Q Consensus 507 ~~~~g~~~~~~~ig~~i~P~i~ 528 (535)
|.++|+.. .+++|..+..++.
T Consensus 139 G~AlGI~g-~GN~G~av~q~~~ 159 (417)
T COG2223 139 GLALGIAG-AGNLGVAVAQLVA 159 (417)
T ss_pred hHHHHHhc-cccccHHHHHHHH
Confidence 99999998 7777765544433
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.3e-05 Score=73.08 Aligned_cols=123 Identities=14% Similarity=0.070 Sum_probs=97.4
Q ss_pred cccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHH
Q psy3965 184 TGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGY 263 (535)
Q Consensus 184 l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~ 263 (535)
+.|..--|+++++-.+......++..+.++.+.+-+.-++.|... +...+-++|+-+..+|+++.++.+......-.|.
T Consensus 65 LTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~t-AaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~ 143 (433)
T KOG3810|consen 65 LTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPAT-AAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGK 143 (433)
T ss_pred HhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHH-HHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHh
Confidence 889888899999888888888888899999999999999999985 5567788999999999999999999888888888
Q ss_pred HHHHHHHhhhc-----chhHHHHHHHHHHHHHHHHhhhcccchhHHHhc
Q psy3965 264 IAISGIAYYIH-----SWRILQWVITAPTIIFLILWWCIPESPRWLLTM 307 (535)
Q Consensus 264 ~i~~~l~~~~~-----~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~ 307 (535)
..+..++..+. +++.+-.+......+..+..+++|..+|-+..+
T Consensus 144 ~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 144 FVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred HHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 88888877663 445555555555555666677788776544433
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.8e-05 Score=76.49 Aligned_cols=130 Identities=13% Similarity=-0.008 Sum_probs=101.3
Q ss_pred HhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccch--------HHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 165 SDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPW--------FEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 165 ~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s--------~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
-..+++.|..+... +.|++|||++.+.+.+++++..+..++..| ...+.+..++.-+| -.....
T Consensus 357 a~~~~vPGyw~tv~-----~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttf 428 (538)
T KOG0252|consen 357 AVCSTVPGYWFTVY-----FIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTF 428 (538)
T ss_pred HHHccCCceeEEEE-----EeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeE
Confidence 44556668888888 999999999999999999999999998877 12233333444343 233445
Q ss_pred hhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc--------chhHHHHHHHHHHHHHHHHhhhcccchh
Q psy3965 237 VLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH--------SWRILQWVITAPTIIFLILWWCIPESPR 302 (535)
Q Consensus 237 ~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--------~Wr~~~~~~~~~~l~~~~~~~~lpesp~ 302 (535)
.+-+|.+|.+.|+...++..+..-+|.+++...-..+. +-|+.+++.+...++..+..+++||+.+
T Consensus 429 ivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 429 IVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred EeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 66789999999999999999999999998877655442 6788999999888888888888999853
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=8.2e-05 Score=78.27 Aligned_cols=97 Identities=15% Similarity=0.255 Sum_probs=84.7
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|+++|++|||+.+.++.+...++.++..+.+ +.+...+.-++.+++.+....+...|.+|..|++.|+.
T Consensus 100 lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~ 178 (513)
T KOG0254|consen 100 LGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGT 178 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHH
Confidence 78889999999999999999999999999999998888876 44466667778889998888889999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy3965 509 GVGASSVPAGVALILIPY 526 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~ 526 (535)
..+.......+|..++-.
T Consensus 179 l~~~~~l~~~~Gi~~~~~ 196 (513)
T KOG0254|consen 179 LVSLYQLFITIGILLGYC 196 (513)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998888888777733
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=60.73 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=50.0
Q ss_pred hhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh-hcccc
Q psy3965 170 QLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL-CMEIV 243 (535)
Q Consensus 170 ~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~-i~e~~ 243 (535)
++...+.|. ++|+-|||+.-+.-.+.+.+++ +.-.++.|-.++++|.+-|+..+..+.+--++ +.|.-
T Consensus 86 mLFGtivgS-----LaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 86 MLFGTIVGS-----LADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHH-----HHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 344455667 9999999997655444444433 34567899999999999999999888887775 55654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=70.89 Aligned_cols=130 Identities=15% Similarity=0.019 Sum_probs=100.2
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccccc--CchhhHH-HHHHHHHHhhchhhccc--hHHHHHHHHHHHhhhhhhhHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF--GRKRALM-GSLVCQLVLGAGVAASP--WFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~--Grr~~l~-~~~~~~~i~~~~~~~~~--s~~~l~~~r~l~G~~~~~~~~ 233 (535)
++..+.|=++.+.|++++|+ ++||+ |||.... +++++..++.+..-+++ |+++..++-++.|+..-+-.-
T Consensus 291 ~~a~~lfE~agl~G~Ll~Gw-----lSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqm 365 (448)
T COG2271 291 NWAISLFEVAGLPGTLLAGW-----LSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQM 365 (448)
T ss_pred HHHHHHHHHHhhHHHHHHHH-----HHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHH
Confidence 77889999999999999999 99984 7775554 45555555555555555 568889999999998877777
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhh-HHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPL-GYIAISGIAYYI---HSWRILQWVITAPTIIFLIL 293 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~l-G~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~ 293 (535)
..-....|..|++--|.+.|+.+.+..+ |.+.+...-+.+ .||...|++..+.+++..++
T Consensus 366 LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~ll 429 (448)
T COG2271 366 LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILL 429 (448)
T ss_pred HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHH
Confidence 7777889999999999999999988777 776665544444 38999888877666654443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00027 Score=71.33 Aligned_cols=109 Identities=14% Similarity=0.010 Sum_probs=87.0
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc--hHHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP--WFEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--s~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
.+.......+.+++.+++.. +++|+|+|+++.++.++..++.++..+.+ +.+.+++..++.++|.+...+...
T Consensus 275 ~~~~~~~~~~~l~~~~~~p~-----L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~w 349 (467)
T COG2211 275 YLLLLASGAGLLIGLILWPR-----LVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPW 349 (467)
T ss_pred HHHHHHHHHHHHHHHHhHHH-----HHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccH
Confidence 34455666777777889999 99999999999999999999999888875 788999999999999999999999
Q ss_pred hhhcccccC-------cchhhhhhhhhhhhhhHHHHHHHHHhh
Q psy3965 237 VLCMEIVGG-------KWLTIAGISYLFPVPLGYIAISGIAYY 272 (535)
Q Consensus 237 ~~i~e~~~~-------~~r~~~~~~~~~~~~lG~~i~~~l~~~ 272 (535)
++++|..+- +.-|...+......=+|..++..+.++
T Consensus 350 am~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 350 AMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988762 222666677766666677666644433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.7e-06 Score=85.58 Aligned_cols=148 Identities=13% Similarity=0.105 Sum_probs=92.8
Q ss_pred cCceeccCCC--c-chhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhh--c---cc-----hHH
Q psy3965 149 GDTIISEPES--H-SYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVA--A---SP-----WFE 215 (535)
Q Consensus 149 ~~~i~~~~~l--~-~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~--~---~~-----s~~ 215 (535)
.+.+.++.+. . +......+...++.++... +.||+|||++++.+.++.+++.+..+ . .+ ++.
T Consensus 276 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T PF00083_consen 276 SPSIFENAGISNSFLATLILGLVNFLGTLLAIF-----LIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSIL 350 (451)
T ss_pred ccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccc
Confidence 3444444444 2 2233444555666777778 99999999999999998888877764 1 11 122
Q ss_pred HHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhcch---hHHHHHHHHHHHH-HH
Q psy3965 216 GYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSW---RILQWVITAPTII-FL 291 (535)
Q Consensus 216 ~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~~W---r~~~~~~~~~~l~-~~ 291 (535)
.+............+..+....+..|.+|.+.|+...++......++.++++.+...+.+. ...+.+.+...++ ..
T Consensus 351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i 430 (451)
T PF00083_consen 351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAII 430 (451)
T ss_pred cceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHh
Confidence 2222222211222244566678899999999999999998887777777777665444211 2334444444444 55
Q ss_pred HHhhhcccch
Q psy3965 292 ILWWCIPESP 301 (535)
Q Consensus 292 ~~~~~lpesp 301 (535)
+.++++||+.
T Consensus 431 ~~~~~lpET~ 440 (451)
T PF00083_consen 431 FVYFFLPETK 440 (451)
T ss_pred heeEEEeeCC
Confidence 5678899983
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0007 Score=70.10 Aligned_cols=109 Identities=10% Similarity=0.027 Sum_probs=70.5
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccc--hHHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASP--WFEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--s~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
+...+.+.++.+++.+++++ ++||+|+|+++..+..+..+..++..+.+ +...+.+.-++.|++.+...+...
T Consensus 266 ~~~l~~~~i~~iig~~l~~~-----l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKP-----LTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888889999999 99999999988765554444344333332 233445555677888777777777
Q ss_pred hhhccccc-------CcchhhhhhhhhhhhhhHHHHHHHHHhh
Q psy3965 237 VLCMEIVG-------GKWLTIAGISYLFPVPLGYIAISGIAYY 272 (535)
Q Consensus 237 ~~i~e~~~-------~~~r~~~~~~~~~~~~lG~~i~~~l~~~ 272 (535)
+++.|..+ .+..|...+......-+|..+++.+++.
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777765 2223555555555666666666655444
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00058 Score=68.80 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=107.0
Q ss_pred hhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhh
Q psy3965 355 DLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPA 434 (535)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (535)
+++.++......+..+++-+...++++.+...+++.++...+...... +.-.++++.
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a-----------------------~~~~gEI~~ 422 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSA-----------------------LCHAGEILF 422 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhh-----------------------hhccchHHH
Confidence 445555544444444444455555655555556666644333322221 112789999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHH
Q psy3965 435 IAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASS 514 (535)
Q Consensus 435 ~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 514 (535)
.+..+++++|+|+-+++.+++.+..+=++.+... .+.|.++.+-++-+...+..|....+|++...|++.|+++.|+..
T Consensus 423 ~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~ 501 (618)
T KOG3762|consen 423 YFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQ 501 (618)
T ss_pred HHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHH
Confidence 9999999999999999999988888777766655 466788888999999999999999999999999999999999886
Q ss_pred HHH-hHHHHHHHHHHh
Q psy3965 515 VPA-GVALILIPYLWD 529 (535)
Q Consensus 515 ~~~-~ig~~i~P~i~~ 529 (535)
... .+|-.+|.+|.+
T Consensus 502 g~f~GlG~g~GslIGG 517 (618)
T KOG3762|consen 502 GIFHGLGKGLGSLIGG 517 (618)
T ss_pred HHhcccCcchhhhhhh
Confidence 543 345444444443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00038 Score=71.45 Aligned_cols=137 Identities=11% Similarity=-0.055 Sum_probs=104.1
Q ss_pred chhHHHhhhhhhcceeeccCCccccccccCc-hhhHHHHHHHHHHhhchhhccch---------------------HHHH
Q psy3965 160 SYEMQSDFDVQLSKLYTGQSNLDDTGSRFGR-KRALMGSLVCQLVLGAGVAASPW---------------------FEGY 217 (535)
Q Consensus 160 ~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Gr-r~~l~~~~~~~~i~~~~~~~~~s---------------------~~~l 217 (535)
+....+.+...+.+++... +.+|+|+ |++..++.++.+++.+...+.++ .+..
T Consensus 309 ~~l~~~s~~~~i~s~~l~~-----l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEK-----LCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASA 383 (477)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHH
Confidence 4444555555566777778 9999995 77778898888888777765443 3778
Q ss_pred HHHHHHHhhhhhhhHHHHHhhhcccccC--cchhhhhhhhhhhhhhHHHHHHHHHhhhc-----chhHHHHHHHHHHHHH
Q psy3965 218 LVLRAMLGFVCVSIVFSGFVLCMEIVGG--KWLTIAGISYLFPVPLGYIAISGIAYYIH-----SWRILQWVITAPTIIF 290 (535)
Q Consensus 218 ~~~r~l~G~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~i~~~l~~~~~-----~Wr~~~~~~~~~~l~~ 290 (535)
++.-.+.|+..+......++++++..++ ++.|..+++++.+..+.+++..+..+.+. +-.+.+.+.++..++.
T Consensus 384 l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~a 463 (477)
T TIGR01301 384 LIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVS 463 (477)
T ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHH
Confidence 8888999999999999999999999995 45599999999999999999887655531 4456777788877774
Q ss_pred HH-Hhhhcccch
Q psy3965 291 LI-LWWCIPESP 301 (535)
Q Consensus 291 ~~-~~~~lpesp 301 (535)
.+ .++.+|..+
T Consensus 464 a~~~~~~~~~~~ 475 (477)
T TIGR01301 464 GLLALILLPRPR 475 (477)
T ss_pred HHHHHHhCCCCC
Confidence 44 466677654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00044 Score=72.36 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=74.4
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
+...++.++.|.++|.+|||..++.+.++..++.++....++.. ..+....+.+++.+.. ......++|+.|.+.|..
T Consensus 89 l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~-~~iag~~l~GvgaG~~-~~~~~~isEl~p~k~R~~ 166 (599)
T PF06609_consen 89 LASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN-TFIAGMVLYGVGAGVQ-ELAALAISELVPNKWRGL 166 (599)
T ss_pred HHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH-HHHHHHHHHHHhhHHH-HHHHHHHHHhcccchhhh
Confidence 56677888999999999999999999999999998887655433 4555566666776655 345666899999999988
Q ss_pred HHHHHHHHHhHHHHHHHHHHh
Q psy3965 509 GVGASSVPAGVALILIPYLWD 529 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~ 529 (535)
+.++.....-+...++|.+..
T Consensus 167 ~~~~~~~~~i~~~~~~~~ia~ 187 (599)
T PF06609_consen 167 GLAIASIPFIITTWISPLIAQ 187 (599)
T ss_pred HhHHHHHHHHhhhcccHHHHH
Confidence 887776555455555666654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00035 Score=64.51 Aligned_cols=139 Identities=13% Similarity=-0.028 Sum_probs=96.8
Q ss_pred eeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHH-hhchhhccchHHHHHHHHHHHh
Q psy3965 152 IISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLV-LGAGVAASPWFEGYLVLRAMLG 225 (535)
Q Consensus 152 i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i-~~~~~~~~~s~~~l~~~r~l~G 225 (535)
.++.|++ +.+.+....-.++.+++.|. ++||+||+-..+.+..+..+ +.....| +++.=.+...+.|
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~-----i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lG 363 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGA-----ISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLG 363 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHH-----hHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHh
Confidence 4566777 44556666666778899999 99999999887776554443 3333333 2333345566788
Q ss_pred hhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc------chhHHHH-HHHHHHHHHHHHhhhc
Q psy3965 226 FVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH------SWRILQW-VITAPTIIFLILWWCI 297 (535)
Q Consensus 226 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~------~Wr~~~~-~~~~~~l~~~~~~~~l 297 (535)
+............++-..|.++.|.+.+..+...++|..+.+++++++. .|--.|. +.+.+++....+.+.+
T Consensus 364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 8877766667778888889999999999999999999999999998883 2333333 3444555554444443
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00016 Score=72.79 Aligned_cols=129 Identities=12% Similarity=-0.060 Sum_probs=103.9
Q ss_pred hhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhc
Q psy3965 161 YEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCM 240 (535)
Q Consensus 161 ~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~ 240 (535)
....-..|-++.-++.++ +..|+|+-+++.+++.+..+=.+...+.+|.|+.+-.-+++|+..+..+....+|++
T Consensus 411 ~~a~~~~gEI~~~ffs~k-----lI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s 485 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFK-----LIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYAS 485 (618)
T ss_pred hhhhhccchHHHHHHHHH-----HHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666677778 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcchhhhhhhhhh-hhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHh
Q psy3965 241 EIVGGKWLTIAGISYLF-PVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILW 294 (535)
Q Consensus 241 e~~~~~~r~~~~~~~~~-~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~ 294 (535)
...||+.|..+.++.+. ..++|--+|+++|+.+. +=|..|.+.++.+++.+++.
T Consensus 486 ~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 486 HVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred hhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 99999999988877664 34556666666666552 56777877777666644443
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00015 Score=71.61 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=75.4
Q ss_pred hhhhhhcceeeccCCccccccc----cCchhhHHH-HHHHHHHhhchhhccchHH-----------------HHHHHHHH
Q psy3965 166 DFDVQLSKLYTGQSNLDDTGSR----FGRKRALMG-SLVCQLVLGAGVAASPWFE-----------------GYLVLRAM 223 (535)
Q Consensus 166 ~~g~~ig~~~~G~~~~~~l~Dr----~Grr~~l~~-~~~~~~i~~~~~~~~~s~~-----------------~l~~~r~l 223 (535)
-+..++-+++.|. .+|| |||||.++. +.++..++.++..++.++. .++++--+
T Consensus 77 Pi~G~~vQP~vG~-----~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~L 151 (498)
T KOG0637|consen 77 PLSGLLVQPLVGS-----ASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWL 151 (498)
T ss_pred ccccceecccccc-----cccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHH
Confidence 3444556788888 9994 998877665 5555566666777765543 34444445
Q ss_pred HhhhhhhhHHHHHhhhcccccCcchhh-hhhhhhhhhhhHHHHHHHHHhhhcchh
Q psy3965 224 LGFVCVSIVFSGFVLCMEIVGGKWLTI-AGISYLFPVPLGYIAISGIAYYIHSWR 277 (535)
Q Consensus 224 ~G~~~~~~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~lG~~i~~~l~~~~~~Wr 277 (535)
.=++.......+-+++.|...+++|.+ +++++....++|..++..++.+. +|+
T Consensus 152 LD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~-~~~ 205 (498)
T KOG0637|consen 152 LDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL-GLY 205 (498)
T ss_pred HHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc-Cce
Confidence 555666778888899999997666655 89999999999998888887654 443
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.015 Score=61.24 Aligned_cols=126 Identities=11% Similarity=0.007 Sum_probs=89.0
Q ss_pred HHHhhhhhhcceeeccCCccccccc-cCchhhHHHHHHHHHHhhchhhccch-------------------------HHH
Q psy3965 163 MQSDFDVQLSKLYTGQSNLDDTGSR-FGRKRALMGSLVCQLVLGAGVAASPW-------------------------FEG 216 (535)
Q Consensus 163 s~~~~g~~ig~~~~G~~~~~~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~s-------------------------~~~ 216 (535)
+.+.-...+..+.+++ ++|- +||-+++.++.++..++.++..++.. ...
T Consensus 80 ~~f~G~~~~~~l~g~~-----laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~ 154 (571)
T KOG1237|consen 80 NAFGGTQFLLPLLGAF-----LADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAV 154 (571)
T ss_pred HHHhhHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHH
Confidence 3344444455677788 9996 69999999998888887554432211 125
Q ss_pred HHHHHHHHhhhhhhhHHHHHhhhccccc---Ccch---hhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHH
Q psy3965 217 YLVLRAMLGFVCVSIVFSGFVLCMEIVG---GKWL---TIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPT 287 (535)
Q Consensus 217 l~~~r~l~G~~~~~~~~~~~~~i~e~~~---~~~r---~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~ 287 (535)
+....-+..+|.|+.-+...++-+|-++ ++++ .....++.....+|.+++..+..++ .+|.+-|.+..+..
T Consensus 155 ~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~ 234 (571)
T KOG1237|consen 155 LYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLN 234 (571)
T ss_pred HHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHH
Confidence 6667778888999999999999999998 3222 3567777788888888887776666 38999888777655
Q ss_pred HHHHHH
Q psy3965 288 IIFLIL 293 (535)
Q Consensus 288 l~~~~~ 293 (535)
++.+++
T Consensus 235 ~lai~i 240 (571)
T KOG1237|consen 235 ALAILI 240 (571)
T ss_pred HHHHHH
Confidence 554443
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0015 Score=67.11 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=86.5
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRN 507 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 507 (535)
.+.+++.+.++++.||+|-|+++..+.++.+++.++..+..+ ..+..+++-++.+++.+..+|....+...-.|++.|+
T Consensus 84 ~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers 163 (466)
T KOG2532|consen 84 WGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERS 163 (466)
T ss_pred HHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHH
Confidence 778888899999999999999999999999998888877644 3345566677888999999999999999999999999
Q ss_pred hHHHHHHHHHhHHHHHHHHHHh
Q psy3965 508 LGVGASSVPAGVALILIPYLWD 529 (535)
Q Consensus 508 ~~~g~~~~~~~ig~~i~P~i~~ 529 (535)
+..++......+|.+++-.+.+
T Consensus 164 ~~~ail~~g~q~g~v~~mp~sg 185 (466)
T KOG2532|consen 164 TFIAILTAGSQLGTIITMPVSG 185 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999887654444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0035 Score=61.29 Aligned_cols=102 Identities=14% Similarity=0.041 Sum_probs=84.9
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQ--GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMR 506 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 506 (535)
.+.....+..+++.+|+|+|+-++.++.++++++.++.-..+ .....+...++.+.+.+........++..+.|++..
T Consensus 59 ~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a 138 (422)
T COG0738 59 GGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA 138 (422)
T ss_pred HHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH
Confidence 345567788899999999999999999999999988864433 334555566777888888888888999999999888
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 507 NLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 507 ~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
+.-+.+...+..+|++++|.+...
T Consensus 139 ~~rlnl~q~fn~lGa~~gp~~g~~ 162 (422)
T COG0738 139 AFRLNLAQAFNGLGAILGPLLGSS 162 (422)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 888999999999999999998764
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.013 Score=58.87 Aligned_cols=104 Identities=11% Similarity=0.075 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHhhchhhcc---ch------HHHHHHHHHHHhhhhhhhHHHHHhhhcccccCc---chhhhhhhhhhhh
Q psy3965 192 RALMGSLVCQLVLGAGVAAS---PW------FEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGK---WLTIAGISYLFPV 259 (535)
Q Consensus 192 ~~l~~~~~~~~i~~~~~~~~---~s------~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~ 259 (535)
|+++++.++..+|.++..++ ++ ...+.++-++.++|.|+.-+...+++.|.++++ +|.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56778888888888874333 22 367899999999999999999999999999865 4456777888999
Q ss_pred hhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHhh
Q psy3965 260 PLGYIAISGIAYYIH---SWRILQWVITAPTIIFLILWW 295 (535)
Q Consensus 260 ~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~~~ 295 (535)
++|..++..+..++. +|.+.|.+.++..++.++.++
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 999999988777763 888899888876666555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0032 Score=60.66 Aligned_cols=139 Identities=14% Similarity=0.018 Sum_probs=102.2
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCcccccccc-CchhhHHHHHHHHHHhhchhhccchHHHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF-GRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRA 222 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~ 222 (535)
.|.|..|-++ |+..+...+..+..++.... +++|. .+|+..+....++.++.+.+.+.+.-..+.- -+
T Consensus 231 LP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~-----la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~ 304 (395)
T COG2807 231 LPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPL-----LARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-AL 304 (395)
T ss_pred HHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHH-----HHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HH
Confidence 4566666666 78888999999999999999 99965 4777778888888888887777765444433 49
Q ss_pred HHhhhhhhhHHHHHhhhcccccCcch-hhhhhhhhhhhhhHHHHHHHHHhhhc----chhHHHHHHHHHHHHHHHH
Q psy3965 223 MLGFVCVSIVFSGFVLCMEIVGGKWL-TIAGISYLFPVPLGYIAISGIAYYIH----SWRILQWVITAPTIIFLIL 293 (535)
Q Consensus 223 l~G~~~~~~~~~~~~~i~e~~~~~~r-~~~~~~~~~~~~lG~~i~~~l~~~~~----~Wr~~~~~~~~~~l~~~~~ 293 (535)
+.|+|.|+.++.+...+.+..+..++ +...++.|....+=..++|.+.++++ +|+...+..+...++..+.
T Consensus 305 llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 305 LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888765444 45556555544444455677777763 8999887776666654444
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0056 Score=56.33 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=37.0
Q ss_pred CcchhhhhhhhhhhhhhHHHHHHHHHhhh--------cchhHHHHHHHHHHHHHHHHhhh
Q psy3965 245 GKWLTIAGISYLFPVPLGYIAISGIAYYI--------HSWRILQWVITAPTIIFLILWWC 296 (535)
Q Consensus 245 ~~~r~~~~~~~~~~~~lG~~i~~~l~~~~--------~~Wr~~~~~~~~~~l~~~~~~~~ 296 (535)
+|+|+..+.+...++++|.++....-... .+|++.+.+.+++.++.++++..
T Consensus 1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888889999998765442221 37999998888777665555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.013 Score=57.92 Aligned_cols=110 Identities=12% Similarity=-0.076 Sum_probs=92.4
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccc-ccCchhhHHHHHHHHHHhhchh---hccchHHHHHHHHHHHhhhhhhhHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGS-RFGRKRALMGSLVCQLVLGAGV---AASPWFEGYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~D-r~Grr~~l~~~~~~~~i~~~~~---~~~~s~~~l~~~r~l~G~~~~~~~~~ 234 (535)
+.++.....|.++|-...|+ +.. |.++|+.-.+++.+..++..+. +...+.+.+...-++.|++.|.....
T Consensus 247 T~Lta~~~~G~L~G~~~~g~-----~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vg 321 (403)
T PF03209_consen 247 TRLTAFWGGGTLLGMLLAGF-----LLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVG 321 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHH
Confidence 45567788888888888888 666 6788888878887777766554 44578899999999999999999999
Q ss_pred HHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 235 GFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
..+.+.+...+++.|..++.+.....++.-++..++..+
T Consensus 322 als~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 322 ALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888888877665
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00097 Score=66.99 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchh--hhhh
Q psy3965 433 PAIAMSILILLKM-GRRRPLCLTTMAAGVACLVTLAFP-QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTK--MRNL 508 (535)
Q Consensus 433 ~~~~~~~~l~dr~-grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~ 508 (535)
+..+++|+++||+ |+|+.++.+.++.+++.+++.... .......+...+...+.|..=+....+..|++|++ .|..
T Consensus 76 ~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~ 155 (498)
T COG3104 76 LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDG 155 (498)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCC
Confidence 4667899999995 999999999999999999988764 22223333333334777777778888999999863 4677
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
++++..+..++|++++|++..+..+
T Consensus 156 gFt~fY~~iNiGsl~~p~i~~~~~~ 180 (498)
T COG3104 156 GFTLFYMGINIGSLIAPIITGLLAI 180 (498)
T ss_pred CccEEEEEeehHHHHHHHHHHHHHH
Confidence 8888899999999999999876543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.031 Score=48.01 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=80.2
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
....++.++++.+.+++|.|+.++++.+...+-..... .+ ..+..+....+.+++.+..|...-.+..+...++.|++
T Consensus 48 ~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~~-~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~ 125 (156)
T PF05978_consen 48 GSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-YP-NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGR 125 (156)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhh
Confidence 34556778889999999999999999887775544433 23 34566777778889999999888889999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
-.|+...+...+.++|.++....
T Consensus 126 ~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 126 NTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888887776654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.00047 Score=51.89 Aligned_cols=66 Identities=11% Similarity=0.028 Sum_probs=59.6
Q ss_pred CcCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHH
Q psy3965 148 FGDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYL 218 (535)
Q Consensus 148 ~~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~ 218 (535)
..|.+++|.++ +++.+..++|+++|++.... +.++..+++.+..+++...+..+.+++.++++.+.
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASR-----LPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 37888888888 88999999999999999999 99998889999999999999999999998877653
|
Note that many members are hypothetical proteins. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0007 Score=66.00 Aligned_cols=103 Identities=11% Similarity=-0.022 Sum_probs=3.4
Q ss_pred CceeehhhHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHhc------------CCChHHHHHHHHHHHHHHHHHhhhh
Q psy3965 427 PGIVEIPAIAMSILILLKM-GRRRPLCLTTMAAGVACLVTLAF------------PQGSWMTISLAMIGKFAISSSNVVM 493 (535)
Q Consensus 427 ~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (535)
.+++..+|+.+..+..-+. .+|.+. +..+.-.+..-++... -++.+..+++.++.++..|...+..
T Consensus 191 Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~tl~ 269 (309)
T PF01733_consen 191 FNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLSTLA 269 (309)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred HHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhhhce
Confidence 3488899999887643221 233333 2222222111111111 0122445556667778888887888
Q ss_pred hhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 494 PVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 494 ~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
..+..+..+++.|..+-.+...+-.+|-.+|..+..+
T Consensus 270 m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 270 MMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp H------------------------------------
T ss_pred eeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888888888777887777766544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=60.31 Aligned_cols=99 Identities=13% Similarity=0.016 Sum_probs=65.7
Q ss_pred hhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc---------ch----------------------HHHHH
Q psy3965 170 QLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS---------PW----------------------FEGYL 218 (535)
Q Consensus 170 ~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~---------~s----------------------~~~l~ 218 (535)
.+...+... +++|++|.+++-+....+.....+.++. ++ .|.+.
T Consensus 73 ~~f~~~y~k-----l~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~s 147 (491)
T PF03219_consen 73 ILFTILYSK-----LSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFS 147 (491)
T ss_pred HHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 444556778 9999999998877666665555554442 11 12222
Q ss_pred HHHHHHhhhhhhhHH-HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 219 VLRAMLGFVCVSIVF-SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 219 ~~r~l~G~~~~~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
+...+.-+-...... .-..+..|.++.++-.+..+++..+.++|.++++.+...+
T Consensus 148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333223232 4578889999999999999999999999999988776554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.024 Score=58.65 Aligned_cols=101 Identities=15% Similarity=0.000 Sum_probs=82.7
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++.+++.+.++.+.||++-.+.+....++.++..++.... ++.+..+++-++.++.-+..+|....++..-|.++.|+.
T Consensus 92 v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~ 170 (495)
T KOG2533|consen 92 VGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGL 170 (495)
T ss_pred HHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhh
Confidence 7788899999999999996666665555555544444443 345577777888889999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l 530 (535)
-+|+.+....+|+++|+++..-
T Consensus 171 r~~~~~a~~~~g~i~ggliA~g 192 (495)
T KOG2533|consen 171 RMGIWYASASLGNIFGGLIAYG 192 (495)
T ss_pred hHHHHHHhcchhhHHHHHHHHH
Confidence 9999999999999999998875
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0042 Score=57.86 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=69.2
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHHHHhhhhhhhcccccc
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQ------GSWMTISLAMIGKFAISSSNVVMPVYTAELFP 502 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 502 (535)
++... .++.|.+.|++|.+.++.++.....++...+..... ..|......++++.+.+........-..+-||
T Consensus 48 ~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP 126 (250)
T PF06813_consen 48 IGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP 126 (250)
T ss_pred HHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc
Confidence 44443 477899999999999999999998888877765521 23444444555555544444444555668898
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHH
Q psy3965 503 TKMRNLGVGASSVPAGVALILIPYLW 528 (535)
Q Consensus 503 ~~~r~~~~g~~~~~~~ig~~i~P~i~ 528 (535)
. .||++.|+.-....+++.+-..+.
T Consensus 127 ~-~RG~vvgilk~~~GLSaai~t~i~ 151 (250)
T PF06813_consen 127 R-SRGTVVGILKGFFGLSAAIFTQIY 151 (250)
T ss_pred c-ccCceehhhhHHHHhHHHHHHHHH
Confidence 5 799999999988888877755544
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.023 Score=56.17 Aligned_cols=60 Identities=10% Similarity=-0.078 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 471 GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
+.+..+.+..+.++..|-..+....++.+..|++.+..+-.+...+-..|-..|..+..+
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345666677777788888778888999999999988777777776666776666666554
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.16 Score=49.52 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=55.0
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhh-ccc----ccch
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVY-TAE----LFPT 503 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e----~~p~ 503 (535)
+..++...+.|.+.||+|||+..+...++.+++++.-.. ++.+..++.-+++++..+..++..=++ +.| -+|.
T Consensus 80 ~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~ 157 (354)
T PF05631_consen 80 ASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ 157 (354)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 556677778889999999999998888888888865432 334455555566777666665544332 333 3565
Q ss_pred hhhhhHHHHHH
Q psy3965 504 KMRNLGVGASS 514 (535)
Q Consensus 504 ~~r~~~~g~~~ 514 (535)
+..+..++...
T Consensus 158 ~~L~~tF~~~t 168 (354)
T PF05631_consen 158 EWLSDTFSLAT 168 (354)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.045 Score=56.12 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=74.7
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
+..++.+...|.++||+|||..+........+..+.+.+.. .|..+ . .-...+.+..++...+++++....+.|..
T Consensus 73 ~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~-~~l~g~~~~~~s~~~a~vadis~~~~R~~ 148 (463)
T KOG2816|consen 73 LLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-L-LGLSGGFSAIFSVGFAYVADISSEEERSS 148 (463)
T ss_pred HHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-h-cccccchhhhhhhhhhheeeccchhHHHH
Confidence 56677788889999999999999988887777766665543 33322 1 11222334456788899999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
..|+.+.....+..++|.+....
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~ 171 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYL 171 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999998888888888877643
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.15 Score=48.65 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=69.6
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccch-hhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPT-KMR 506 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r 506 (535)
+....+.++.|.+.||.|||+.+..+.....++.++..+... ..+.........+++.+...+....+..|.+|. +.|
T Consensus 50 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (338)
T COG0477 50 LGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATER 129 (338)
T ss_pred HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHH
Confidence 344455588999999999997777776553444444444443 233444444445666667778888999999997 678
Q ss_pred hhHHHHHHH-HHhHHHHHHHHHHhh
Q psy3965 507 NLGVGASSV-PAGVALILIPYLWDM 530 (535)
Q Consensus 507 ~~~~g~~~~-~~~ig~~i~P~i~~l 530 (535)
+...+.... ...+|..++|.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T COG0477 130 GLAVGLVTLGAGALGLALGPLLAGL 154 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877 577788888865543
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.025 Score=57.58 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=72.0
Q ss_pred eeehhhHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHhc---CC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccch
Q psy3965 429 IVEIPAIAMSILILLKMGR-RRPLCLTTMAAGVACLVTLAF---PQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPT 503 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~gr-r~~l~~~~~~~~i~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 503 (535)
++.+++.++.++...|.++ |+.++.+.+++.++.++.... ++ ..+++++.-++.+++.+.. +..-.|+++..-.
T Consensus 82 lg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~ 160 (488)
T KOG2325|consen 82 LGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTV 160 (488)
T ss_pred HHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc
Confidence 7777888888999999886 788888999999988887443 44 3455555556666665543 5666888887666
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHh
Q psy3965 504 KMRNLGVGASSVPAGVALILIPYLWD 529 (535)
Q Consensus 504 ~~r~~~~g~~~~~~~ig~~i~P~i~~ 529 (535)
+.|.++++..+...-+|.++||.+-.
T Consensus 161 ~dR~rA~a~~~~~~vlg~ilGp~~q~ 186 (488)
T KOG2325|consen 161 EDRPRAFAATSGGFVLGIILGPTIQL 186 (488)
T ss_pred cchHHHHHHhhhHHHHHHHHhHHHHH
Confidence 77778887777666666666666543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.12 Score=51.61 Aligned_cols=107 Identities=17% Similarity=0.049 Sum_probs=78.8
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHH--H---HhhchhhccchHHHHHHHHHHHhhhhhhhHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQ--L---VLGAGVAASPWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~--~---i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
.+.+..|.+|..++.--... + |+ |++.+.+.+-. . +.....-+.++.|..++.-+..|+..|..+.
T Consensus 284 ~~Y~~~YQ~GVFISRSS~~~-----~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 284 RWYQLLYQLGVFISRSSLPF-----F--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHhhhhcceee-----e--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45566777777766443322 2 33 33333333222 1 2222334568999999999999999999999
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH 274 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~ 274 (535)
-.+..+.|-.++++|-..++...++-++|.+++++++..+.
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987764
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.63 Score=44.16 Aligned_cols=122 Identities=10% Similarity=-0.075 Sum_probs=71.2
Q ss_pred hhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcc
Q psy3965 168 DVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKW 247 (535)
Q Consensus 168 g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~ 247 (535)
-.++..+.... ..||+---.-..+..++.+.+.++.+++++.++=+++-.+..++.|.-...-..+-+ ++
T Consensus 74 PsL~iKl~~Pf-----f~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-----~Y 143 (409)
T KOG3880|consen 74 PSLAIKLTAPF-----FIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-----RY 143 (409)
T ss_pred HHHHHHHhchh-----hhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-----cC
Confidence 33444455556 778765433345566778889999999999999888888888776665544444332 22
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhcc-----hhHHHHHHHH-HHHHHHHHhhhccc
Q psy3965 248 LTIAGISYLFPVPLGYIAISGIAYYIHS-----WRILQWVITA-PTIIFLILWWCIPE 299 (535)
Q Consensus 248 r~~~~~~~~~~~~lG~~i~~~l~~~~~~-----Wr~~~~~~~~-~~l~~~~~~~~lpe 299 (535)
.....+.+..|.+.+.++|+.--.++.. -|...++... |.+.++..++.+++
T Consensus 144 ~~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~ 201 (409)
T KOG3880|consen 144 PSIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS 201 (409)
T ss_pred CCceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence 2333445555555555555443333333 3555666554 44444444444443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.77 Score=46.59 Aligned_cols=111 Identities=10% Similarity=-0.065 Sum_probs=73.0
Q ss_pred HHHhh-hhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc---------ch-------------------
Q psy3965 163 MQSDF-DVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS---------PW------------------- 213 (535)
Q Consensus 163 s~~~~-g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~---------~s------------------- 213 (535)
+..-+ +.++..++.+. +.+++-|.+++-..+..+....+++++. ++
T Consensus 68 ~~~vlP~avif~~iy~k-----l~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~i 142 (509)
T COG3202 68 TWGVLPSAVIFTIIYQK-----LLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFI 142 (509)
T ss_pred HHHhchHHHHHHHHHHH-----HHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeee
Confidence 33334 45566677778 8889988888877766666666555543 11
Q ss_pred ----HHHHHHHHHHHhhhhhhhHH-HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhcchhH
Q psy3965 214 ----FEGYLVLRAMLGFVCVSIVF-SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRI 278 (535)
Q Consensus 214 ----~~~l~~~r~l~G~~~~~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~~Wr~ 278 (535)
.|...+.....-+-.+.... .-.....|.+..++-.+..++++.+.+++..+++.+...+..||.
T Consensus 143 li~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~ 212 (509)
T COG3202 143 LIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRD 212 (509)
T ss_pred EeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 13333333333333222222 445677899988999999999999999999999888877755443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.23 Score=50.93 Aligned_cols=138 Identities=11% Similarity=0.018 Sum_probs=95.0
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc----------chHHHHHHHHHHHhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS----------PWFEGYLVLRAMLGFVC 228 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~----------~s~~~l~~~r~l~G~~~ 228 (535)
+.+..+..++.++|..+... ..-+..-|+++..+.++..+..+..... ++.+-.+.--++..+..
T Consensus 258 ~~~~~vg~~~~l~g~~~y~~-----~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~ 332 (433)
T PF03092_consen 258 GTLSIVGSIASLLGILLYRK-----YFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIG 332 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHH
Confidence 44556677777888888777 7667777888888888777766543211 22233334446666777
Q ss_pred hhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc--------c---hhHHHHHHHHHHHHHHHHhhhc
Q psy3965 229 VSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH--------S---WRILQWVITAPTIIFLILWWCI 297 (535)
Q Consensus 229 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--------~---Wr~~~~~~~~~~l~~~~~~~~l 297 (535)
...+-....+++|..|+...|...++.....++|..++..++..+. + -.++.++..+..++.+.+..++
T Consensus 333 ~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lL 412 (433)
T PF03092_consen 333 MIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLL 412 (433)
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHc
Confidence 7778888889999999999999999998888888888888877662 2 2234444555555555556667
Q ss_pred ccch
Q psy3965 298 PESP 301 (535)
Q Consensus 298 pesp 301 (535)
|+..
T Consensus 413 p~~~ 416 (433)
T PF03092_consen 413 PPQK 416 (433)
T ss_pred CCCc
Confidence 7653
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.52 Score=48.01 Aligned_cols=107 Identities=16% Similarity=0.082 Sum_probs=75.9
Q ss_pred chhHHHhhhhhhcc----eeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc------------------chHHHH
Q psy3965 160 SYEMQSDFDVQLSK----LYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS------------------PWFEGY 217 (535)
Q Consensus 160 ~~~s~~~~g~~ig~----~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~------------------~s~~~l 217 (535)
.+..+++++..+|. .+.+. +++=.+|+||++.+.++..+..++.++.-.. +++...
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~--l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~ 356 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSI--LSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLA 356 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHH--HhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHH
Confidence 34455555555544 44445 2223456899999999998888887766433 246688
Q ss_pred HHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHH
Q psy3965 218 LVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGI 269 (535)
Q Consensus 218 ~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l 269 (535)
++.-++.|++-+......++++.... +++|..+.++...-.+++..++...
T Consensus 357 ~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 357 LIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 88889999999999999999999999 6777777777776666666554433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.79 Score=49.44 Aligned_cols=100 Identities=5% Similarity=0.027 Sum_probs=70.3
Q ss_pred hhHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHHHHHHhhhhhhhcccccchh
Q psy3965 433 PAIAMSILILLK-MGRRRPLCLTTMAAGVACLVTLAFPQG-------SWMTISLAMIGKFAISSSNVVMPVYTAELFPTK 504 (535)
Q Consensus 433 ~~~~~~~~l~dr-~grr~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 504 (535)
+..++++++.|+ +||++.+.++.++..++.+++.+.... ....+....+...|.+..-+...+...|.++.+
T Consensus 38 l~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~ 117 (654)
T TIGR00926 38 LTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEER 117 (654)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCcc
Confidence 456677888885 799999999988888888776653211 112333444556666666677778888888643
Q ss_pred ---hhhhHHHHHHHHHhHHHHHHHHHHhhhh
Q psy3965 505 ---MRNLGVGASSVPAGVALILIPYLWDMVN 532 (535)
Q Consensus 505 ---~r~~~~g~~~~~~~ig~~i~P~i~~l~~ 532 (535)
.|...+.+.....++|+++++.+.....
T Consensus 118 ~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~ 148 (654)
T TIGR00926 118 QLSLRSRFFSFFYFAINAGSLISTIITPILR 148 (654)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888899999998887766543
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.25 Score=49.39 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=67.8
Q ss_pred ceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHhhhhh----hhcccc
Q psy3965 428 GIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQG---SWMTISLAMIGKFAISSSNVVMP----VYTAEL 500 (535)
Q Consensus 428 ~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~ 500 (535)
.+..++..+.+.|+.||+|-|..+.++..+.+++..+=...... ....-.+.+.+....+...+-.. -...--
T Consensus 89 m~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~W 168 (480)
T KOG2563|consen 89 MVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVW 168 (480)
T ss_pred HHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhh
Confidence 37788888999999999999999999999888888765544221 11111233444444444433332 233445
Q ss_pred cchhhhhhHHHHHHHHHhHHHHHHHHH
Q psy3965 501 FPTKMRNLGVGASSVPAGVALILIPYL 527 (535)
Q Consensus 501 ~p~~~r~~~~g~~~~~~~ig~~i~P~i 527 (535)
||+++|+++..+..+...+|.+++-++
T Consensus 169 F~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 169 FPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred CCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 899999999999988888777666444
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.4 Score=46.20 Aligned_cols=109 Identities=11% Similarity=-0.091 Sum_probs=57.8
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHH-HHHHHH-Hhhchh----hccchH-HHHHHHHHHHhhhhhhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMG-SLVCQL-VLGAGV----AASPWF-EGYLVLRAMLGFVCVSI 231 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~-~~~~~~-i~~~~~----~~~~s~-~~l~~~r~l~G~~~~~~ 231 (535)
+.+.+++++|..+|+.+.++ +.++.-|+...+- ...+.+ ++..+. ++...+ ..+...-++.|+..|+.
T Consensus 53 ~~ii~~fl~glalGs~l~~~-----~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 127 (521)
T PRK03612 53 STVIGLMLFAMGVGALLSKY-----LLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGME 127 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999888 7644333322111 111111 111111 111111 22334445667777787
Q ss_pred HHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh
Q psy3965 232 VFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI 273 (535)
Q Consensus 232 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~ 273 (535)
.|....+..+... ++-+...+-......+|.++|.++..++
T Consensus 128 ~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 128 IPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 7777666654322 1223444555556666777776665443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=90.01 E-value=3.7 Score=42.39 Aligned_cols=96 Identities=8% Similarity=-0.060 Sum_probs=65.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc--CC--C--------------------------hHHHHHHHHHHHH
Q psy3965 435 IAMSILILLKMGRRRPLCLTTMAAGVACLVTLAF--PQ--G--------------------------SWMTISLAMIGKF 484 (535)
Q Consensus 435 ~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~--~~--~--------------------------~~~~~~~~~~~~~ 484 (535)
.++-+++++|++|++.+..........++++.+. |. . .|....+.+....
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 5667889999999987766554444444333322 11 0 2222233333444
Q ss_pred HHHHHhh-hhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhh
Q psy3965 485 AISSSNV-VMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDM 530 (535)
Q Consensus 485 ~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l 530 (535)
......+ +.|.+++|.+..++..+-.++....+++|.+++|.+...
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455 778999999999999999999999999999999987654
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.12 Score=38.51 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=33.0
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQ 201 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~ 201 (535)
|.+.++..+...++++++|. ++||+||++.++....+.
T Consensus 38 Gil~~i~~~~~~~~~pl~g~-----laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 38 GILSAIRPLIRFLAPPLWGF-----LADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHCccHHHHHHHHHH
Confidence 88889999999999999999 999999988887765543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.3 Score=36.32 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=24.3
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHH
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMA 457 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 457 (535)
+..+++.++.|.++||.+|++.......+
T Consensus 46 ~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 46 LIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 77888999999999999998877666544
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.5 Score=41.69 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=66.2
Q ss_pred HHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhcch
Q psy3965 199 VCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSW 276 (535)
Q Consensus 199 ~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~~W 276 (535)
+++.+...+..+.++++..++.-+.-|+-.|..++-.+--+.+-.++++|-.+++....+-++|..+++.++..+.+|
T Consensus 327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh~~ 404 (409)
T KOG3880|consen 327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLHNW 404 (409)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccchhh
Confidence 344444555667899999999999999988888888888888888899999999999999999999999998877665
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=87.49 E-value=1.3 Score=44.63 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=59.7
Q ss_pred eeehhhHHHHHHHHhh----cCChhHHHHH-HHHHHHHHHHHHhcCC----------C--hHHHHHHHH----HHHHHHH
Q psy3965 429 IVEIPAIAMSILILLK----MGRRRPLCLT-TMAAGVACLVTLAFPQ----------G--SWMTISLAM----IGKFAIS 487 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr----~grr~~l~~~-~~~~~i~~~~~~~~~~----------~--~~~~~~~~~----~~~~~~~ 487 (535)
+.+++..++.|..+|| +|||+..+.. ....+++++++.+..+ . ....++..+ +.-+...
T Consensus 78 i~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n 157 (498)
T KOG0637|consen 78 LSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANN 157 (498)
T ss_pred cccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhh
Confidence 5566777888899995 7887766554 4445555555554411 1 111222222 3334444
Q ss_pred HHhhhhhhhcccccchhhhhh-HHHHHHHHHhHHHHHH
Q psy3965 488 SSNVVMPVYTAELFPTKMRNL-GVGASSVPAGVALILI 524 (535)
Q Consensus 488 ~~~~~~~~~~~e~~p~~~r~~-~~g~~~~~~~ig~~i~ 524 (535)
......-++..++...+.+.+ +.+....+..+|+.++
T Consensus 158 ~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLG 195 (498)
T KOG0637|consen 158 TLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLG 195 (498)
T ss_pred hhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceee
Confidence 555666788888887777777 8888888888887665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 535 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-06 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 8e-08
Identities = 73/527 (13%), Positives = 124/527 (23%), Gaps = 215/527 (40%)
Query: 99 FTRDDEKFGYN-------PCAIKDLDY------------SQSYHDLLLESENVTTTRP-- 137
F + ++ Y + + D + +++ + V+ T
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 138 ---CQK------------------WLYDTNNFGDTIISEPESHSYEMQSDFDVQLSKLYT 176
K +L I +E S + + Q +LY
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSP------IKTEQRQPSMMTRM-YIEQRDRLYN 121
Query: 177 -GQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSG 235
Q SR L +L +L P +++ +LG
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQAL-LEL--------RP--AKNVLIDGVLGS--------- 161
Query: 236 FVLCMEIVGGK-WLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILW 294
GK W+ + S+++ + F I W
Sbjct: 162 ---------GKTWVALDVCL--------------------SYKVQC------KMDFKIFW 186
Query: 295 WCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVL 354
L + VL+ + L D +
Sbjct: 187 ----------LNLKNCNSPETVLE-----MLQKLLYQIDPNWTSRSDHSSNIK----LRI 227
Query: 355 DLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFN--STTLST 412
+ L RL+ Y L LVL +V +FN L T
Sbjct: 228 HSIQAELRRLLKSKPYE----NCL----LVLL------NVQNAKAW--NAFNLSCKILLT 271
Query: 413 S---SILCFHDLSTSCVPGIVEI-----PAIAMSILIL-LKMGRRRPLCLTTMAAGVACL 463
+ + F +T+ + P S+L+ L RP L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---RPQDLPREVLTTNPR 328
Query: 464 VTLAFPQGSWMTISLAMIGKF---------------------AISSS-NVVMPVYTAELF 501
L++I + I SS NV+ P ++F
Sbjct: 329 R-------------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 502 PTKMRNLGVGASSVPAGVALILIPY-----LW---------DMVNSF 534
L V P IP +W +VN
Sbjct: 376 ----DRLSV----FPPSA---HIPTILLSLIWFDVIKSDVMVVVNKL 411
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 38/193 (19%)
Query: 2 SSDKMGADTVSNSTATPSNEKPPSSPVTTNEDPISNAIGEFGRWQFQLTVLLSLLNIP-- 59
+ K D +S +T T + S +T +E ++ + ++P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDE-----VKSLLLKY-----LDCRPQDLPRE 321
Query: 60 -CTWHIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVFTRDDEKFGYNPCAIKDLDY 118
T + L+ A A DN+ H++ + I N ++ +Y
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--------LN--VLEPAEY 371
Query: 119 SQSYHDL--LLESENVTTTRPCQKWLYDTNNFGDTIISEPESHS-------------YEM 163
+ + L S ++ T W + ++++ +S +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 164 QSDFDVQLSKLYT 176
+ V+L Y
Sbjct: 432 YLELKVKLENEYA 444
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 48/384 (12%), Positives = 107/384 (27%), Gaps = 95/384 (24%)
Query: 187 RFGRKR----ALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVF--SGFVLCM 240
R + L+ + L +G A+ VL + G+ F G+ C
Sbjct: 88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW------FQGMGWPPCG 141
Query: 241 EIVG--------GKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLI 292
+ G +++ ++ + + + + W ++ I+ +
Sbjct: 142 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 201
Query: 293 LWWCI----PESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSG 348
+ + P+S EE D + + +E +
Sbjct: 202 FAFAMMRDTPQSCGL----PPIEEYKNDYPDDY-----------------NEKAEQELTA 240
Query: 349 KKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYG----LVLNLSNIGGDVYVNTVISGES 404
K++ + + L+ I + VYL+ YG L +
Sbjct: 241 KQIFMQYVLPNKLLWYI----AIANVFVYLLRYGILDWSPTYLKEVKH------------ 284
Query: 405 FNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILI------LLKMGRRRPLCL-TTMA 457
F +S + E I ++L + + R T+
Sbjct: 285 -------------FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331
Query: 458 AGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTK-------MRNLG- 509
+ + + + ++ F I +++ ++ EL P K L
Sbjct: 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 391
Query: 510 --VGASSVPAGVALILIPYLWDMV 531
G+ + A V + + WD
Sbjct: 392 YLGGSVAASAIVGYTVDFFGWDGG 415
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.93 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.92 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.84 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.83 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.8 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.68 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.66 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.57 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.28 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.28 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=295.08 Aligned_cols=336 Identities=18% Similarity=0.285 Sum_probs=239.6
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhh------------------ccchHHHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVA------------------ASPWFEGYLVL 220 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~------------------~~~s~~~l~~~ 220 (535)
+++.+++++|.++|++++|+ ++||+|||++++++.+++.+++++++ +++|+++++++
T Consensus 58 g~~~s~~~~G~~iG~~~~G~-----laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGY-----CSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 78999999999999999999 99999999999999999999999888 47899999999
Q ss_pred HHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-----------cchhHHHHHHHHHHHH
Q psy3965 221 RAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-----------HSWRILQWVITAPTII 289 (535)
Q Consensus 221 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-----------~~Wr~~~~~~~~~~l~ 289 (535)
|+++|++.|+..+...++++|+.|+++|++..++.+.++.+|.++++.++... ..||+.+.+..++.++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999998887665 2588888888888888
Q ss_pred HHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHH
Q psy3965 290 FLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQ 369 (535)
Q Consensus 290 ~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 369 (535)
..+..+++||||||+..+++.+++++.+++....+..+.+. .+.++... +.++.......++.+.........
T Consensus 213 ~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4gc0_A 213 FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV---QEIKHSLD----HGRKTGGRLLMFGVGVIVIGVMLS 285 (491)
T ss_dssp HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHTTHHHHSCCTHHHHHHHHH
T ss_pred hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH---HHHHHHHH----hhhhhhhHHHHhcccHHHHHHHHH
Confidence 88888999999999999999999999998876543211000 00000000 011111222333334333322222
Q ss_pred HHHHh--hhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCC
Q psy3965 370 YVVWF--SVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGR 447 (535)
Q Consensus 370 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr 447 (535)
.+..+ .....+|...+. ...+.+...... ...+.++..+++.++++++.||+||
T Consensus 286 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~dr~Gr 341 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVF-KTLGASTDIALL-----------------------QTIIVGVINLTFTVLAIMTVDKFGR 341 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHH-HHSSCCHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhhhhHHHhcchHHH-HhcCCCccchhh-----------------------HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 22221 122223332221 111111100000 0012226778899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHH-hhhhhhhcccccchhhhhhHHHHHHHHHhHHHHH
Q psy3965 448 RRPLCLTTMAAGVACLVTLAF---PQGSWMTISLAMIGKFAISSS-NVVMPVYTAELFPTKMRNLGVGASSVPAGVALIL 523 (535)
Q Consensus 448 r~~l~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i 523 (535)
|+.++.+....+++++.+... ....+..+...++...+.+.. .++.+.+.+|++|++.|+++.|+.+.++++++++
T Consensus 342 r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i 421 (491)
T 4gc0_A 342 KPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF 421 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred cchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence 999998888877776665433 222333333333333333322 3677899999999999999999999999999999
Q ss_pred HHHHHhh
Q psy3965 524 IPYLWDM 530 (535)
Q Consensus 524 ~P~i~~l 530 (535)
+|++...
T Consensus 422 ~~~~~p~ 428 (491)
T 4gc0_A 422 VSWTFPM 428 (491)
T ss_dssp HHTHHHH
T ss_pred HHHHHHH
Confidence 8877543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=255.85 Aligned_cols=329 Identities=12% Similarity=0.009 Sum_probs=237.2
Q ss_pred CcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhc----cchHHHHHHHHHHHhhhhhhhHH
Q psy3965 158 SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAA----SPWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 158 l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~----~~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
.+++.+++.++..++++++|+ ++||+|||++++++.++.+++.++.++ +++++.++++|++.|++.+...+
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~-----l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~ 138 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGS-----VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP 138 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH-----HHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccc
Confidence 388999999999999999999 999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cc-hhHHHHHHHHHHHHH-HHHhhhcccchhHHHhcC
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HS-WRILQWVITAPTIIF-LILWWCIPESPRWLLTMG 308 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~-Wr~~~~~~~~~~l~~-~~~~~~lpesp~~l~~~~ 308 (535)
...+++.|++|+++|+++.++.+.+..+|.++++.++..+ .+ ||+.|++.+++.++. ++.++++||+|++...+.
T Consensus 139 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (451)
T 1pw4_A 139 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP 218 (451)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS
T ss_pred hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC
Confidence 9999999999999999999999999999999999998664 36 999999988877664 445677899886432111
Q ss_pred CHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccC
Q psy3965 309 KTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLS 388 (535)
Q Consensus 309 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (535)
+.++ ..+..+.. ..+++++...++...+++++++.++...+..++..+...........+..
T Consensus 219 ~~~~----------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (451)
T 1pw4_A 219 IEEY----------------KNDYPDDY--NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 280 (451)
T ss_dssp CTTT----------------CCC---------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBT
T ss_pred hhhh----------------cccccccc--hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 00000000 00000001111112466788888776666655544443333222333333
Q ss_pred c-cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhc--CChhHHHHHHHHHH-HHHHH
Q psy3965 389 N-IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM--GRRRPLCLTTMAAG-VACLV 464 (535)
Q Consensus 389 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~~~~~~~~-i~~~~ 464 (535)
+ ++.+......+. .+.+++.+++.++.+++.||+ |||+.+..+..+.. +++++
T Consensus 281 ~~~g~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (451)
T 1pw4_A 281 EVKHFALDKSSWAY-----------------------FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 337 (451)
T ss_dssp TBSCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 2 333322111111 122277888999999999999 99998887776666 55555
Q ss_pred HHhcCC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhH-HHHHHHHHHhhhh
Q psy3965 465 TLAFPQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGV-ALILIPYLWDMVN 532 (535)
Q Consensus 465 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i-g~~i~P~i~~l~~ 532 (535)
+.+.++ ..+......++.+++.+...+....+..|.+|++.|+++.|+.+.+..+ |.+++|.+.+...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 338 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 4445555555666766777777889999999999999999999999999 9999999987643
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=243.18 Aligned_cols=317 Identities=9% Similarity=-0.074 Sum_probs=234.1
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchh---hccchHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV---AASPWFEGYLVL 220 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~~~s~~~l~~~ 220 (535)
.|.+.+++++ +++.+.+.++..+++++.|+ ++||+|||++++++.++.+++.++. +++++++.++++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~-----l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGI-----LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 3455666665 88899999999999999999 9999999999999999999999999 899999999999
Q ss_pred HHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc----c---------------------
Q psy3965 221 RAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH----S--------------------- 275 (535)
Q Consensus 221 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----~--------------------- 275 (535)
|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+. +
T Consensus 124 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (438)
T 3o7q_A 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHS 203 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhh
Confidence 999999999999999999999999999999999999999999999999887653 2
Q ss_pred ----hhHHHHHHHHHHHHHHHHhhh--cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCC
Q psy3965 276 ----WRILQWVITAPTIIFLILWWC--IPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGK 349 (535)
Q Consensus 276 ----Wr~~~~~~~~~~l~~~~~~~~--lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (535)
||+.|++.+++.++..+..++ .||+++.. ++++++.+.
T Consensus 204 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------------------------------~~~~~~~~~ 247 (438)
T 3o7q_A 204 LVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN------------------------------------HSDAKQGSF 247 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC------------------------------------CCCSSTTSH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc------------------------------------cccccccch
Confidence 999998877666554444333 45554210 000011112
Q ss_pred cccchhhccCchHHHHHHHHHHHHhhhHHh-hhhhhh-ccCccCCceeeeeeEEccccCccccccccccccccCcCCccC
Q psy3965 350 KVEVLDLWRTPLMRLISCVQYVVWFSVYLV-YYGLVL-NLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVP 427 (535)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (535)
+.++++++++|.++...+..++........ .+...+ ..+.++.+......... +.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------------------~~ 304 (438)
T 3o7q_A 248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLT-----------------------GT 304 (438)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHH-----------------------HH
T ss_pred hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHH-----------------------HH
Confidence 345677888888887766655444433222 222222 22222322211111111 12
Q ss_pred ceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhh
Q psy3965 428 GIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRN 507 (535)
Q Consensus 428 ~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 507 (535)
.++.+++.++.+++.||+|||+.+..+.++.+++++++.+.++ .+. ....++.+++.+..++..+.+..|.+|++ ++
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 381 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG-HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK 381 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH-HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC-cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc
Confidence 2677889999999999999999999998888887777666543 223 33335556777777888999999999977 88
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 508 LGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 508 ~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
.+.++.. .+.+|++++|.+.+...+
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 8888877 677999999999876543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-27 Score=235.76 Aligned_cols=312 Identities=10% Similarity=0.010 Sum_probs=219.9
Q ss_pred CceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHH
Q psy3965 150 DTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAML 224 (535)
Q Consensus 150 ~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~ 224 (535)
|.+.+++++ +++.+.+.++..+++++.|+ ++||+|||++++.+.++..++.++.+++++++.+++.|++.
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 98 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGP-----ISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQ 98 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHH-----HHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445566665 78889999999999999999 99999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHH-Hhhhcccc
Q psy3965 225 GFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLI-LWWCIPES 300 (535)
Q Consensus 225 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~-~~~~lpes 300 (535)
|++.+...+...+++.|+.|+++|+++.++.+.+..+|.++++.++..+. +||+.+++.++..++..+ ..+.+||+
T Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 99 GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 99999999999999999999999999999999999999999999988874 799999988887777555 56678887
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhh
Q psy3965 301 PRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY 380 (535)
Q Consensus 301 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (535)
+++. +++++.+.++++++|+|.++...+...+.+.......
T Consensus 179 ~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (375)
T 2gfp_A 179 RPVD---------------------------------------APRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFE 219 (375)
T ss_dssp STTT---------------------------------------CCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC---------------------------------------cccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Confidence 6420 0001123456677777777666555544433332222
Q ss_pred hhhhhccCc-cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHH-H
Q psy3965 381 YGLVLNLSN-IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMA-A 458 (535)
Q Consensus 381 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~-~ 458 (535)
.....+..+ .+.+......+. ...+++.+++.++.+++.||.+++ +..+... .
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~-----------------------~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~ 274 (375)
T 2gfp_A 220 ACSGVLMGAVLGLSSMTVSILF-----------------------ILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCL 274 (375)
T ss_dssp HHCSCSSHHHHHHHHHHHHHHH-----------------------HTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 222222211 111111100000 111245556666666666666552 2222222 1
Q ss_pred HHHHH--HHHhc-CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 459 GVACL--VTLAF-PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 459 ~i~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
..+.. ..... .++.+......++.+++.+...+....+..|.+| +.|+++.|+.+....+|.+++|.+.+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 275 LAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11111 1133344455566677788878888999999999 7899999999999999999998876543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=224.34 Aligned_cols=347 Identities=12% Similarity=-0.018 Sum_probs=217.9
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccc-cCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSR-FGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
+++.+.+.++..+++++.|+ ++|| +|||+++..+.++.+++.++++++++++.++++|++.|++.+...+...+
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~-----l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 131 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGF-----VADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVST 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHH
Confidence 88899999999999999999 9999 89999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcc--hhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhc-ccch----hHHHhc
Q psy3965 238 LCMEIVGGKW--LTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCI-PESP----RWLLTM 307 (535)
Q Consensus 238 ~i~e~~~~~~--r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~l-pesp----~~l~~~ 307 (535)
++.|++|+++ |+.+.++.+.+..+|.+++|.++..+ .+||+.|++.++..++..+..++. |+.. +....+
T Consensus 132 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4aps_A 132 LVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDP 211 (491)
T ss_dssp HHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCC
T ss_pred HHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCc
Confidence 9999999988 77788889999999999999998876 489999999877666544443322 2211 000111
Q ss_pred CCHHHHHHHHHH--------------HHHHcCCCCChhhHHHHHH----h-hhhhhhccCCcccchhhccCchHHHHHHH
Q psy3965 308 GKTEEAMEVLKD--------------AARFNDKTLPANTDKLLKQ----S-VSSMKEDSGKKVEVLDLWRTPLMRLISCV 368 (535)
Q Consensus 308 ~~~~~a~~~l~~--------------~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 368 (535)
.+.++.++..+. ....++.+........... . .......+++.....+..+........+.
T Consensus 212 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 212 LAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp CSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 233333333332 1112222221111000000 0 00000000000000111111122222222
Q ss_pred HHHHHhhhHHhhhhhhhccCc-cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCC
Q psy3965 369 QYVVWFSVYLVYYGLVLNLSN-IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGR 447 (535)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr 447 (535)
....+............+..+ .+.+... .+ ......++..+++.++.+++.||++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------------------~~~~~~~~~~~~~~~~~~~l~~r~~~ 348 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSSWFP----VS-------------------WFQSLNPLFIMLYTPFFAWLWTAWKK 348 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCSSSC----SG-------------------GGTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccCccC----HH-------------------HHhccchHHHHHHHHHHHHHHHHHhc
Confidence 222233222222222222211 1111100 00 11112236677788889999999999
Q ss_pred hhHHH-----HHHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHH
Q psy3965 448 RRPLC-----LTTMAAGVACLVTLAFP--------QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASS 514 (535)
Q Consensus 448 r~~l~-----~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 514 (535)
|+... .+..+.+++++++.... ...+......++.+++.+...+..+.++.|.+|++.|+++.|+.+
T Consensus 349 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 428 (491)
T 4aps_A 349 NQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWF 428 (491)
T ss_dssp C---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 86544 55555555555444421 233445555666677777777888999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhhhh
Q psy3965 515 VPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 515 ~~~~ig~~i~P~i~~l~~~ 533 (535)
....+|.+++|.+..+..+
T Consensus 429 ~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 429 LSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999877654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-21 Score=200.88 Aligned_cols=132 Identities=12% Similarity=0.058 Sum_probs=119.1
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccccc-CchhhHHHHHHHHHHhhchhhccc-hHHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF-GRKRALMGSLVCQLVLGAGVAASP-WFEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~~-s~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
+++.+++.++..+++++.|+ ++||+ |||+++.++.++.+++.++.++++ +++.+++.|++.|++.+...+...
T Consensus 57 g~~~~~~~~~~~~~~~~~G~-----l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGW-----IADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHH-----HHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence 88899999999999999999 99999 999999999999999999999999 999999999999999999999999
Q ss_pred hhhcccccCcchhhhhhh---hhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhh
Q psy3965 237 VLCMEIVGGKWLTIAGIS---YLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWW 295 (535)
Q Consensus 237 ~~i~e~~~~~~r~~~~~~---~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~ 295 (535)
+++.|++|+++|++..+. .+.+..+|.+++|.++..+ .+||+.|++.++..++..+..+
T Consensus 132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876666 8888999999999988766 3899999988877666544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-22 Score=202.52 Aligned_cols=318 Identities=12% Similarity=0.077 Sum_probs=188.8
Q ss_pred CcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhc---hhhccchHH-HHHHHHHHHhhhhhhhHH
Q psy3965 158 SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGA---GVAASPWFE-GYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 158 l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~---~~~~~~s~~-~l~~~r~l~G~~~~~~~~ 233 (535)
.+++.+.+.++..++++++|+ ++||+|||++++++..+.+++.. ...+++... .+...+++.|++.+...+
T Consensus 45 ~g~~~~~~~~~~~i~~~~~G~-----lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 119 (417)
T 2cfq_A 45 TGIIFAAISLFSLLFQPLFGL-----LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFN 119 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-----HHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 388999999999999999999 99999999999988877654321 112222221 234566666666555555
Q ss_pred HHHhhhcccccC--cchhhhhhhhhhhhhhHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCC
Q psy3965 234 SGFVLCMEIVGG--KWLTIAGISYLFPVPLGYIAISGIAYYIH--SWRILQWVITAPTIIFLILWWCIPESPRWLLTMGK 309 (535)
Q Consensus 234 ~~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~ 309 (535)
.....+.++.++ ++|+...+....+..+|..++|.++..+. +||+.|++.+++.++..+..++.+|+|+. +.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~ 196 (417)
T 2cfq_A 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS---SAT 196 (417)
T ss_dssp TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSC
T ss_pred hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccccc---ccc
Confidence 444445555443 45566677777788888888888877653 79999988777655555544444433210 000
Q ss_pred HHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCc
Q psy3965 310 TEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSN 389 (535)
Q Consensus 310 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (535)
.++ + +++++++....+++++++++.++...+.....+............+...
T Consensus 197 ~~~------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2cfq_A 197 VAN------------A---------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249 (417)
T ss_dssp SSS------------S---------------SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc------------c---------------cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0000000111234567788877655544322221111110001111111
Q ss_pred -cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc
Q psy3965 390 -IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAF 468 (535)
Q Consensus 390 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~ 468 (535)
++.... .....+ . ...+..++++++.++.+++.||+|||+.+..+..+.++..+++.+.
T Consensus 250 ~~~~~~~-~~~~~g---------~----------~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~ 309 (417)
T 2cfq_A 250 FFATGEQ-GTRVFG---------Y----------VTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA 309 (417)
T ss_dssp TSSSHHH-HTHHHH---------H----------HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccCC-ChhHHH---------H----------HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Confidence 110000 000000 0 0001125667888999999999999999888887777766555443
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHH-HHHHhHHHHHHHHHHhhh
Q psy3965 469 PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGAS-SVPAGVALILIPYLWDMV 531 (535)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~ig~~i~P~i~~l~ 531 (535)
+ +.+...+..++.+++.+...+..+.++.|.+|++.|+++.|+. +...++|++++|.+.+..
T Consensus 310 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 310 T-SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp C-SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 3 3334444444444555545556678999999999999999995 778889999999988754
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=9.9e-10 Score=110.96 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=112.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..++..++..++.++.|+ ++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~-----l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPL-----IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777888999999 9999999999999988888887788888888888888888898887777888899
Q ss_pred hcccccCcchhhhhhh-hhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHH-hhhcccch
Q psy3965 239 CMEIVGGKWLTIAGIS-YLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLIL-WWCIPESP 301 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~-~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~-~~~lpesp 301 (535)
+.|.+|++.|+...++ .+....+|..++|.+++.+. +++..|.+.++..++..+. ++..||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999998888 48888899999998887653 6777888877776665544 44566654
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=103.74 Aligned_cols=134 Identities=16% Similarity=0.057 Sum_probs=113.8
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccccc--CchhhHHHHHHHHH-Hhhchhhcc--chHHHHHHHHHHHhhhhhhhHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF--GRKRALMGSLVCQL-VLGAGVAAS--PWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~--Grr~~l~~~~~~~~-i~~~~~~~~--~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
++..+.+.++.+++.++.|+ ++||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+...+
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 365 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGW-----MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVM 365 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHH
Confidence 67788889999999999999 99999 99999988877766 666666666 3788888889999999999999
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhh-HHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhc
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPL-GYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCI 297 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~l-G~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~l 297 (535)
....++.|..|+++|+++.++.+....+ |..+++.+.+.+ .+|+..|++.++..++..+..+++
T Consensus 366 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 366 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999888766 378999988887777655554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-08 Score=100.50 Aligned_cols=136 Identities=14% Similarity=0.051 Sum_probs=94.6
Q ss_pred hhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc-----chHHHHHHHHHHHhhhhhhhHHHH
Q psy3965 161 YEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS-----PWFEGYLVLRAMLGFVCVSIVFSG 235 (535)
Q Consensus 161 ~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~-----~s~~~l~~~r~l~G~~~~~~~~~~ 235 (535)
......+...++.++.+. +.||+|||+.++.+.....++.+..+.. ++...+...-+..+....+..+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~-----l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
T 4gc0_A 317 QTIIVGVINLTFTVLAIM-----TVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVC 391 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHH
Confidence 345566777888899999 9999999999999888877776655432 222222222222222223445677
Q ss_pred HhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---------cchhHHHHHHHHHHHHHH-HHhhhcccch
Q psy3965 236 FVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---------HSWRILQWVITAPTIIFL-ILWWCIPESP 301 (535)
Q Consensus 236 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---------~~Wr~~~~~~~~~~l~~~-~~~~~lpesp 301 (535)
+.+.+|.+|.+.|+...++......+|.++++.+...+ .++...|++.++.+++.. +.++++||+.
T Consensus 392 ~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 392 WVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 88999999999999999998888888887776654433 145556777777766644 4567899983
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-08 Score=103.12 Aligned_cols=131 Identities=7% Similarity=-0.062 Sum_probs=107.1
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHH-----HHHHHHHHhhchhhccc---------hHHHHHHHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALM-----GSLVCQLVLGAGVAASP---------WFEGYLVLRAML 224 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~-----~~~~~~~i~~~~~~~~~---------s~~~l~~~r~l~ 224 (535)
++..+...++..++.++.|+ +.||+|||+... .+.++.+++.++..+.. +.+.+.+.-++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~-----l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (491)
T 4aps_A 322 SWFQSLNPLFIMLYTPFFAW-----LWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALV 396 (491)
T ss_dssp GGGTTHHHHHHHHHHHHHHH-----HHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHH-----HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence 77788888999999999999 999999987665 77777777777776643 777888889999
Q ss_pred hhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHh
Q psy3965 225 GFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH--SWRILQWVITAPTIIFLILW 294 (535)
Q Consensus 225 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--~Wr~~~~~~~~~~l~~~~~~ 294 (535)
|++.+...+....++.|..|+++|+.+.++.+....+|..+++.+...+. ++.+.+.+.++..++..+..
T Consensus 397 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 397 ILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999999999999999999999999999999999987774 56667777666665544443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-07 Score=96.54 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=104.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.+.++..++.++.|+ ++||+|||+++..+.++..++.++..+.++.+.+... ++.|++.+...+...++
T Consensus 298 ~~~~~~~~~~~~~~~~~~g~-----l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 371 (438)
T 3o7q_A 298 ANYLTGTMVCFFIGRFTGTW-----LISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSL 371 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 67778889999999999999 9999999999999999999999988888888765554 88999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---c-hhHHHHHHHHHHHHHHHHhh
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---S-WRILQWVITAPTIIFLILWW 295 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~-Wr~~~~~~~~~~l~~~~~~~ 295 (535)
..|..|++ |+...++.. ...+|..++|.+.+.+. + ++..|++.++..++..+..+
T Consensus 372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999866 887777766 44588888888877653 5 88888876555444443333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-06 Score=89.14 Aligned_cols=112 Identities=13% Similarity=0.005 Sum_probs=85.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccc----cccCc----hhhHHHHHHHHHHhhchhhcc---------chHHHHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTG----SRFGR----KRALMGSLVCQLVLGAGVAAS---------PWFEGYLVLR 221 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~----Dr~Gr----r~~l~~~~~~~~i~~~~~~~~---------~s~~~l~~~r 221 (535)
++..+...++..++.++.+. +. ||.|| ++.+..+.++.+++.++.++. .+.+.+++.-
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNF-----VLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPY 412 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTT-----C------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHh-----hhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Confidence 34444555666666666666 53 55543 356677888888877777664 3677888889
Q ss_pred HHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhcc
Q psy3965 222 AMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHS 275 (535)
Q Consensus 222 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~~ 275 (535)
++.|++.+...+....++.|..|+++|++++++.+....+|..+++.+...+.+
T Consensus 413 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 413 ALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999887753
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.3e-07 Score=89.91 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=87.5
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|++.||+|||+.+..+..+.+++.++..+.+ +.+...+..++.+++.+...+....+..|.+|++.|+.
T Consensus 46 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (375)
T 2gfp_A 46 LTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRH 124 (375)
T ss_dssp HHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCS
T ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHH
Confidence 66778889999999999999999999998888888777654 34455666677778888888888999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.++.+....+|.+++|.+....
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 125 ANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999988754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 535 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 4e-08 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 53.5 bits (127), Expect = 4e-08
Identities = 33/349 (9%), Positives = 83/349 (23%), Gaps = 43/349 (12%)
Query: 187 RFGRKRALMGSL----VCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEI 242
R + L L L +G A+ VL + G+ +
Sbjct: 85 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 144
Query: 243 VGGKWLTIAGISYLFPVPLGYIAISGI----AYYIHSWRILQWVITAPTIIFLILWWCIP 298
K + +G + + + W ++ I+ + + +
Sbjct: 145 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 204
Query: 299 ESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWR 358
+ EE D + +E + K++ + +
Sbjct: 205 RDTPQSCGLPPIEEYKNDYPDDYNEKAE-----------------QELTAKQIFMQYVLP 247
Query: 359 TPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCF 418
L+ I+ V+ Y + L + +
Sbjct: 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH------------------FALDKSSW 289
Query: 419 HDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISL 478
+ MS + + T+ + + + +
Sbjct: 290 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349
Query: 479 AMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
++ F I +++ ++ EL P K G + + + +
Sbjct: 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.81 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.55 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=6e-28 Score=244.78 Aligned_cols=328 Identities=10% Similarity=-0.013 Sum_probs=219.5
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc----chHHHHHHHHHHHhhhhhhhHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS----PWFEGYLVLRAMLGFVCVSIVFS 234 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~----~s~~~l~~~r~l~G~~~~~~~~~ 234 (535)
+++.+++.++..++++++|+ ++||+|||+++.++.++.+++.++++++ ++++.+++.|++.|++.+...+.
T Consensus 62 g~~~s~~~~~~~~~~~~~G~-----l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 136 (447)
T d1pw4a_ 62 GFALSGISIAYGFSKFIMGS-----VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 136 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhH
Confidence 89999999999999999999 9999999999999999999999988876 47889999999999999999999
Q ss_pred HHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh----cchhHHHHHHHHHHHHHH-HHhhhcccchhHHHhcCC
Q psy3965 235 GFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI----HSWRILQWVITAPTIIFL-ILWWCIPESPRWLLTMGK 309 (535)
Q Consensus 235 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~----~~Wr~~~~~~~~~~l~~~-~~~~~lpesp~~l~~~~~ 309 (535)
...++.|++|+++|+++.++.+.+..+|.++++.++... .+||+.+++.+++.++.. +.+++++|+|+.......
T Consensus 137 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (447)
T d1pw4a_ 137 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI 216 (447)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC
T ss_pred HHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh
Confidence 999999999999999999999999999999888776553 489999998887766644 445666776653211111
Q ss_pred HHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHh-hhhhhhccC
Q psy3965 310 TEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLV-YYGLVLNLS 388 (535)
Q Consensus 310 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (535)
.++ ..+.. .+...+.+++...++...+..++++..+.......+.+...... .+...+..+
T Consensus 217 ~~~----------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (447)
T d1pw4a_ 217 EEY----------------KNDYP--DDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE 278 (447)
T ss_dssp TTT----------------CCC---------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred hhh----------------hhhcc--cchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhccc
Confidence 000 00000 00000111111222334556677777666555544444333222 222222222
Q ss_pred ccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH--
Q psy3965 389 NIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTL-- 466 (535)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~-- 466 (535)
..+.+........ .+..+..+++.++.+++.||++|++..........+..+...
T Consensus 279 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (447)
T d1pw4a_ 279 VKHFALDKSSWAY-----------------------FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 335 (447)
T ss_dssp BSCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccchhhhhh-----------------------hcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHH
Confidence 2222221111111 112267788999999999999987654443333322222222
Q ss_pred -hcC-CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHH-HHHHHHHHhhhh
Q psy3965 467 -AFP-QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVA-LILIPYLWDMVN 532 (535)
Q Consensus 467 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig-~~i~P~i~~l~~ 532 (535)
... .+.+...+..++.+++.+...+....+..|.+|++.|+++.|+.+++++++ .+++|.+.+...
T Consensus 336 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~ 404 (447)
T d1pw4a_ 336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 404 (447)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 234455555556666666667788899999999999999999999998875 566888776543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=8.2e-21 Score=188.55 Aligned_cols=325 Identities=12% Similarity=0.047 Sum_probs=202.6
Q ss_pred eeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHH----HHHHH
Q psy3965 152 IISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGY----LVLRA 222 (535)
Q Consensus 152 i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l----~~~r~ 222 (535)
+++++|+ |++.+++.++..++++++|+ ++||+|||++++++..+..++.++..+..+.... ++.++
T Consensus 34 l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~-----l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T d1pv7a_ 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGL-----LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI 108 (417)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHH-----HHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3445555 88999999999999999999 9999999999999999999998888887765543 45555
Q ss_pred HHhhhhhhhHHHHHhhhcccccC--cchhhhhhhhhhhhhhHHHHHHHHHhhhc--chhHHHHHHHHH-HHHHHHHhhhc
Q psy3965 223 MLGFVCVSIVFSGFVLCMEIVGG--KWLTIAGISYLFPVPLGYIAISGIAYYIH--SWRILQWVITAP-TIIFLILWWCI 297 (535)
Q Consensus 223 l~G~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--~Wr~~~~~~~~~-~l~~~~~~~~l 297 (535)
+.+.+.+...........+..++ +++....+........|..+++.++..+. +|+..+...... .+...+..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (417)
T d1pv7a_ 109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp HTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHh
Confidence 55555555544444444444332 23445566667777788888888877663 556555555444 44455566677
Q ss_pred ccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhH
Q psy3965 298 PESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVY 377 (535)
Q Consensus 298 pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 377 (535)
+|+|+.. .+.++ +++.++........+.++.+..+..............
T Consensus 189 ~~~~~~~---~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (417)
T d1pv7a_ 189 TDAPSSA---TVANA----------------------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYD 237 (417)
T ss_dssp CCSCSSS---CSSHH----------------------------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred cccccch---hhhhh----------------------------hhhhcccccccccccccccccccchhhhhHHHHHHHH
Confidence 7766421 00000 0001111111222333444444444333333332222
Q ss_pred HhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHH
Q psy3965 378 LVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMA 457 (535)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 457 (535)
...............+........+ .......++..++..+.+++.||.++|+.+..+..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~ 298 (417)
T d1pv7a_ 238 VFDQQFANFFTSFFATGEQGTRVFG-------------------YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHH-------------------HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHH
T ss_pred hhhccccccccccccccccchhhhc-------------------ccccccccccccchhhhhhhhcccccccchhhhHHH
Confidence 2221111111111111100000000 000011256677888899999999999999999988
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHH-HHHhHHHHHHHHHHhhhh
Q psy3965 458 AGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASS-VPAGVALILIPYLWDMVN 532 (535)
Q Consensus 458 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~ig~~i~P~i~~l~~ 532 (535)
.++..+++.+.+ +.+...+..++.+++.+...+....+..|.+|++.|+++.|+.. ....+|.+++|.+.+...
T Consensus 299 ~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~ 373 (417)
T d1pv7a_ 299 MSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777654 44466666677778888888999999999999999999999865 455689999998876543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=2.2e-10 Score=111.92 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=117.3
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
+...+...++..++..+.++ +.||+|||+++.++.++.+++.++..+.++.+.+.+..++.|++.+...+...++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~-----l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 336 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPL-----IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHH-----HHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhh-----hhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888889999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcchhhhhhhh-hhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHH-hhhccc
Q psy3965 239 CMEIVGGKWLTIAGISY-LFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLIL-WWCIPE 299 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~-~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~-~~~lpe 299 (535)
+.|.+|+++|++..++. +....+|..++|.+++.+. ||+..+++.++..++..+. .+.+++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999998874 6677899999998877663 8999998888777665444 444443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=4.8e-07 Score=89.01 Aligned_cols=130 Identities=15% Similarity=0.044 Sum_probs=97.3
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHH---HHhhch--hhccchHHHHHHHHHHHhhhhhhhHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQ---LVLGAG--VAASPWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~---~i~~~~--~~~~~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
++..+.+.++..++.++.|+ ++||++||+......... .++.++ .....+.+...+.-++.|++.++..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 362 (447)
T d1pw4a_ 288 SWAYFLYEYAGIPGTLLCGW-----MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVM 362 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhhcchhhhhhhhhhhhh-----hhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999 999999876443333222 222222 23346788888888999999999999
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhh-HHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPL-GYIAISGIAYYI---HSWRILQWVITAPTIIFLIL 293 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~l-G~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~ 293 (535)
....+..|.+|++.|+.+.++.+....+ |.+++|.+.+.+ .||+..+++.++..++..++
T Consensus 363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 426 (447)
T d1pw4a_ 363 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 426 (447)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998776665 566777776654 38999888777666554443
|