Psyllid ID: psy3982

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
MRTRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAASVQTNVTDDKA
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHEEccHHHHHHHHHHccccccccccccccccccccEEEccccc
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHccEEEccccccccccccccccEcccccc
mrtryvpegnltacgtdyltkdwhhrsYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVAtlrsgdqsgtsAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIshpkfrqaldkkfpslvcgtvesdsssaasvqtnvtddka
mrtryvpegnltacGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMnvatlrsgdqsgtsAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVesdsssaasvqtnvtddka
MRTRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAASVQTNVTDDKA
*******EGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVH**************************EIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGT********************
*RTRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEK**************************KLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSL************************
MRTRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCG*********************
****YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQ*****************SAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGT********************
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRTRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAASVQTNVTDDKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query185 2.2.26 [Sep-21-2011]
Q94741381 Opsin-1 OS=Schistocerca g N/A N/A 0.983 0.477 0.703 9e-75
P35362376 Rhodopsin OS=Sphodromanti N/A N/A 0.989 0.486 0.693 3e-72
Q95YI3381 Ceropsin OS=Bombyx mori G N/A N/A 0.978 0.475 0.685 8e-72
O02464377 Opsin-1 OS=Manduca sexta N/A N/A 0.978 0.480 0.685 3e-71
Q17296378 Rhodopsin OS=Cataglyphis N/A N/A 0.875 0.428 0.740 1e-69
Q17292378 Rhodopsin OS=Camponotus a N/A N/A 0.875 0.428 0.740 7e-69
Q17053377 Rhodopsin, long-wavelengt no N/A 0.913 0.448 0.698 1e-66
P28678373 Opsin Rh1 OS=Drosophila p yes N/A 0.978 0.485 0.622 1e-62
P06002373 Opsin Rh1 OS=Drosophila m yes N/A 0.989 0.490 0.606 2e-62
P35360376 Lateral eye opsin OS=Limu N/A N/A 0.978 0.481 0.605 3e-62
>sp|Q94741|OPS1_SCHGR Opsin-1 OS=Schistocerca gregaria GN=Lo1 PE=2 SV=1 Back     alignment and function desciption
 Score =  279 bits (713), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 128/182 (70%), Positives = 153/182 (84%)

Query: 4   RYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMR 63
           RYVPEGN+TACGTDYLTKDW  RSY++ Y FFVY +PL  IIY+Y+FI++AVS HEKQMR
Sbjct: 194 RYVPEGNMTACGTDYLTKDWVSRSYILVYSFFVYLLPLGTIIYSYFFILQAVSAHEKQMR 253

Query: 64  EQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPL 123
           EQ KKMNVA+LRS + S TSAE KLAKVALMTISLWF  WTPYL+INF GI E ++I+PL
Sbjct: 254 EQRKKMNVASLRSAEASQTSAECKLAKVALMTISLWFFGWTPYLIINFTGIFETMKISPL 313

Query: 124 ITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAASVQTNVTDD 183
           +TIWGS+FAKANAV+NPIVY ISHPK+R AL+KKFPSL C +   D++S AS  T V+D+
Sbjct: 314 LTIWGSLFAKANAVFNPIVYGISHPKYRAALEKKFPSLACASSSDDNTSVASGATTVSDE 373

Query: 184 KA 185
           K+
Sbjct: 374 KS 375
Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.
Schistocerca gregaria (taxid: 7010)
>sp|P35362|OPSD_SPHSP Rhodopsin OS=Sphodromantis sp. PE=2 SV=1 Back     alignment and function description
>sp|Q95YI3|OPSCE_BOMMO Ceropsin OS=Bombyx mori GN=Bcop PE=1 SV=1 Back     alignment and function description
>sp|O02464|OPS1_MANSE Opsin-1 OS=Manduca sexta GN=OP1 PE=1 SV=2 Back     alignment and function description
>sp|Q17296|OPSD_CATBO Rhodopsin OS=Cataglyphis bombycina PE=2 SV=1 Back     alignment and function description
>sp|Q17292|OPSD_CAMAT Rhodopsin OS=Camponotus atriceps PE=2 SV=1 Back     alignment and function description
>sp|Q17053|OPSD_APIME Rhodopsin, long-wavelength OS=Apis mellifera PE=1 SV=1 Back     alignment and function description
>sp|P28678|OPS1_DROPS Opsin Rh1 OS=Drosophila pseudoobscura pseudoobscura GN=ninaE PE=1 SV=4 Back     alignment and function description
>sp|P06002|OPS1_DROME Opsin Rh1 OS=Drosophila melanogaster GN=ninaE PE=1 SV=1 Back     alignment and function description
>sp|P35360|OPSL_LIMPO Lateral eye opsin OS=Limulus polyphemus PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
10441606 378 long-wavelength like opsin [Megoura vici 0.983 0.481 0.735 2e-77
193624882 377 PREDICTED: opsin-1-like [Acyrthosiphon p 0.983 0.482 0.735 2e-77
46561744 381 putative rhodopsin [Homalodisca vitripen 0.983 0.477 0.711 2e-73
53830702 381 putative rhodopsin [Oncometopia nigrican 0.983 0.477 0.711 3e-73
3024267 381 RecName: Full=Opsin-1 gi|4388595|emb|CAA 0.983 0.477 0.703 4e-73
334363046 377 green-sensitive opsin [Gryllus bimaculat 0.978 0.480 0.712 1e-72
4959075 341 rhodopsin [Papilio glaucus] 0.983 0.533 0.714 1e-72
188593535 381 long wave opsin [Athalia rosae] 0.978 0.475 0.695 2e-72
242117921 378 rhodopsin 1/6-like [Tribolium castaneum] 0.978 0.478 0.712 3e-71
224184720 376 long-wave-sensitive opsin [Dianemobius n 0.978 0.481 0.696 6e-71
>gi|10441606|gb|AAG17119.1| long-wavelength like opsin [Megoura viciae] Back     alignment and taxonomy information
 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/185 (73%), Positives = 159/185 (85%), Gaps = 3/185 (1%)

Query: 3   TRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQM 62
           +RYVPE N+TACGTDYLT  WH RSY++ Y  F Y++PL++IIYAYYFIV+AV+ HEK M
Sbjct: 193 SRYVPEANMTACGTDYLTLAWHSRSYVLVYAIFAYYLPLLVIIYAYYFIVKAVASHEKSM 252

Query: 63  REQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINP 122
           REQAKKMNV++LRSGDQS TSAE KLAKVALMTISLWF+AWTPY+VINF GI +++ I+P
Sbjct: 253 REQAKKMNVSSLRSGDQSNTSAEFKLAKVALMTISLWFMAWTPYMVINFAGIFQLITIDP 312

Query: 123 LITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVE---SDSSSAASVQTN 179
           L TIWGSVFAKANAVYNPIVYAISHPK+R ALDKKFP LVCG +E   SDS S AS QT 
Sbjct: 313 LFTIWGSVFAKANAVYNPIVYAISHPKYRLALDKKFPCLVCGKLEDDRSDSKSVASAQTT 372

Query: 180 VTDDK 184
           +++DK
Sbjct: 373 ISEDK 377

Source: Megoura viciae

Species: Megoura viciae

Genus: Megoura

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|193624882|ref|XP_001947730.1| PREDICTED: opsin-1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|46561744|gb|AAT01077.1| putative rhodopsin [Homalodisca vitripennis] Back     alignment and taxonomy information
>gi|53830702|gb|AAU95194.1| putative rhodopsin [Oncometopia nigricans] Back     alignment and taxonomy information
>gi|3024267|sp|Q94741.1|OPS1_SCHGR RecName: Full=Opsin-1 gi|4388595|emb|CAA56377.1| locus opsin 1 [Schistocerca gregaria] Back     alignment and taxonomy information
>gi|334363046|gb|AEG78684.1| green-sensitive opsin [Gryllus bimaculatus] Back     alignment and taxonomy information
>gi|4959075|gb|AAD34224.1|AF077193_1 rhodopsin [Papilio glaucus] Back     alignment and taxonomy information
>gi|188593535|dbj|BAG32517.1| long wave opsin [Athalia rosae] Back     alignment and taxonomy information
>gi|242117921|ref|NP_001155991.1| rhodopsin 1/6-like [Tribolium castaneum] gi|270007219|gb|EFA03667.1| hypothetical protein TcasGA2_TC013765 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|224184720|gb|ACN39591.1| long-wave-sensitive opsin [Dianemobius nigrofasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
FB|FBgn0002940373 ninaE "neither inactivation no 0.972 0.482 0.616 3.6e-57
FB|FBgn0019940369 Rh6 "Rhodopsin 6" [Drosophila 0.983 0.493 0.584 4.2e-56
FB|FBgn0003248381 Rh2 "Rhodopsin 2" [Drosophila 0.967 0.469 0.586 1.1e-53
FB|FBgn0003249383 Rh3 "Rhodopsin 3" [Drosophila 0.945 0.456 0.412 5.6e-29
FB|FBgn0003250378 Rh4 "Rhodopsin 4" [Drosophila 0.945 0.462 0.418 7.1e-29
FB|FBgn0014019382 Rh5 "Rhodopsin 5" [Drosophila 0.918 0.445 0.385 1.5e-26
UNIPROTKB|Q4R1I4 706 OPN4 "Melanopsin" [Branchiosto 0.837 0.219 0.407 7.3e-24
RGD|621701474 Opn4 "opsin 4" [Rattus norvegi 0.827 0.322 0.386 1.6e-23
UNIPROTKB|F1NEY8 528 OPN4 "Uncharacterized protein" 0.832 0.291 0.393 1.9e-23
ZFIN|ZDB-GENE-070111-2 594 opn4a "opsin 4a (melanopsin)" 0.816 0.254 0.382 2.1e-23
FB|FBgn0002940 ninaE "neither inactivation nor afterpotential E" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 111/180 (61%), Positives = 136/180 (75%)

Query:     3 TRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQM 62
             +RYVPEGNLT+CG DYL +DW+ RSYLIFY  FVY++PL LI Y+Y+FI+ AVS HEK M
Sbjct:   189 SRYVPEGNLTSCGIDYLERDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAM 248

Query:    63 REQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINP 122
             REQAKKMNV +LRS + +  SAE KLAKVAL+TI+LWF+AWTPYLVIN  G+ +   + P
Sbjct:   249 REQAKKMNVKSLRSSEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLFKFEGLTP 308

Query:   123 LITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAASVQTNVTD 182
             L TIWG+ FAK+ A YNPIVY ISHPK+R AL +K P  V G V+   SS A  Q   ++
Sbjct:   309 LNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVFGKVDDGKSSDAQSQATASE 368
GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS
GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS
GO:0007602 "phototransduction" evidence=ISS;IMP;NAS
GO:0016028 "rhabdomere" evidence=IDA
GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA
GO:0005791 "rough endoplasmic reticulum" evidence=IDA
GO:0005771 "multivesicular body" evidence=IDA
GO:0016029 "subrhabdomeral cisterna" evidence=IDA
GO:0005767 "secondary lysosome" evidence=IDA
GO:0016027 "inaD signaling complex" evidence=TAS;IPI
GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP
GO:0004930 "G-protein coupled receptor activity" evidence=IEA;NAS
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0042052 "rhabdomere development" evidence=IMP
GO:0007601 "visual perception" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0046673 "negative regulation of compound eye retinal cell programmed cell death" evidence=IMP
GO:0009642 "response to light intensity" evidence=IMP
GO:0008344 "adult locomotory behavior" evidence=IMP
GO:0005886 "plasma membrane" evidence=IDA
GO:0043052 "thermotaxis" evidence=IMP
FB|FBgn0019940 Rh6 "Rhodopsin 6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0003248 Rh2 "Rhodopsin 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0003249 Rh3 "Rhodopsin 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0003250 Rh4 "Rhodopsin 4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0014019 Rh5 "Rhodopsin 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R1I4 OPN4 "Melanopsin" [Branchiostoma belcheri (taxid:7741)] Back     alignment and assigned GO terms
RGD|621701 Opn4 "opsin 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEY8 OPN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070111-2 opn4a "opsin 4a (melanopsin)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P28678OPS1_DROPSNo assigned EC number0.62290.97830.4852yesN/A
P06002OPS1_DROMENo assigned EC number0.60650.98910.4906yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 2e-21
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score = 87.4 bits (217), Expect = 2e-21
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 6   VPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQ 65
           V EGN+T C  D+  +    RSY +      + +PL++I+  Y  I+R +    +    Q
Sbjct: 122 VEEGNVTTCLIDFPEESTK-RSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQ 180

Query: 66  AKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINF---GGILEMVEINP 122
           A+    +          S E K AK+ L+ + ++ L W PY ++        L +  + P
Sbjct: 181 ARAKRSS----------SKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLP 230

Query: 123 LITIWGSVFAKANAVYNPIVY 143
              +     A  N+  NPI+Y
Sbjct: 231 TALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 185
PHA03234338 DNA packaging protein UL33; Provisional 99.89
PHA03235409 DNA packaging protein UL33; Provisional 99.88
KOG4219|consensus423 99.85
PHA02834323 chemokine receptor-like protein; Provisional 99.84
PHA02638417 CC chemokine receptor-like protein; Provisional 99.82
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.8
KOG4220|consensus503 99.77
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.68
KOG2087|consensus363 99.32
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.25
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.04
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 98.86
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 98.65
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 98.28
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 98.06
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 98.0
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 97.97
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 97.87
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 97.82
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 97.67
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 97.29
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 97.12
KOG4193|consensus610 96.93
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 96.64
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 96.59
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 96.2
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 96.17
KOG4564|consensus473 95.59
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 92.03
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 85.64
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 82.02
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 81.48
>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information 
Probab=99.89  E-value=1.6e-22  Score=155.78  Aligned_cols=126  Identities=17%  Similarity=0.261  Sum_probs=94.1

Q ss_pred             ccccccccccccccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCchHHHHH
Q psy3982          12 TACGTDYLTKDWHHRSYL---IFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKL   88 (185)
Q Consensus        12 ~~C~~~~~~~~~~~~~y~---~~~~~~~~~~p~~i~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (185)
                      +.|...|+.++. ...+.   ...+.+.+++|+++|++||.+|.+.++++                      +.++++|+
T Consensus       179 ~~C~~~~~~~~~-~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~----------------------~~~~~~k~  235 (338)
T PHA03234        179 GKCNIHISSKKA-YDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL----------------------TEKKHKKT  235 (338)
T ss_pred             CcCcccCCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------hhhhhhhh
Confidence            579887754321 11222   12234457999999999999999888742                      01346789


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhc----cc-----chHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhcc
Q psy3982          89 AKVALMTISLWFLAWTPYLVINFGGILEM----VE-----INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFP  159 (185)
Q Consensus        89 ~~~~~~i~~~f~i~~~P~~v~~~~~~~~~----~~-----~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~  159 (185)
                      +|++++++++|++||+||++..++.....    ..     .......++.+++++||++||+||++.+++||+++++.++
T Consensus       236 ~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~  315 (338)
T PHA03234        236 LFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQ  315 (338)
T ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999999999887654321    00     1234567888999999999999999999999999998776


Q ss_pred             c
Q psy3982         160 S  160 (185)
Q Consensus       160 ~  160 (185)
                      +
T Consensus       316 ~  316 (338)
T PHA03234        316 D  316 (338)
T ss_pred             H
Confidence            4

>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4219|consensus Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 3e-28
2z73_A448 Crystal Structure Of Squid Rhodopsin Length = 448 3e-28
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 5e-13
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 5e-13
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 1e-12
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 1e-12
2x72_A349 Crystal Structure Of The Constitutively Active E113 1e-12
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 2e-12
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 1e-06
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 2e-06
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-06
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 4e-06
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-05
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 2e-05
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 3e-05
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 4e-05
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 1e-04
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Query: 5   YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 64
           Y  EG L  C  DY+++D   RS ++      +F P+++I + Y+ IV +VS HEK+M  
Sbjct: 176 YTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAA 235
Query: 65  QAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-INPL 123
            AK++N   LR   Q+G +AE++LAK++++ +S + L+W+PY V+        +E + P 
Sbjct: 236 MAKRLNAKELRKA-QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPY 294
Query: 124 ITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFP 159
                 +FAKA+A++NP++Y++SHPKFR+A+ + FP
Sbjct: 295 AAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 330
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 7e-68
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 4e-57
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 3e-15
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 7e-11
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 1e-10
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-09
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 6e-06
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 2e-05
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 1e-04
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 1e-04
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 2e-04
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 2e-04
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 2e-04
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 8e-04
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 3e-04
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 7e-04
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
 Score =  212 bits (541), Expect = 7e-68
 Identities = 60/181 (33%), Positives = 107/181 (59%), Gaps = 4/181 (2%)

Query: 4   RYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMR 63
            Y  EG L  C  DY+++D   RS ++      +F P+++I + Y+ IV +VS HEK+M 
Sbjct: 176 AYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMA 235

Query: 64  EQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGIL-EMVEINP 122
             AK++N   LR   Q+G +AE++LAK++++ +S + L+W+PY V+        +  + P
Sbjct: 236 AMAKRLNAKELRKA-QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTP 294

Query: 123 LITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSL--VCGTVESDSSSAASVQTNV 180
                  +FAKA+A++NP++Y++SHPKFR+A+ + FP +   C   + ++      +T +
Sbjct: 295 YAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETEDDKDAETEI 354

Query: 181 T 181
            
Sbjct: 355 P 355
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.94
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.91
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 99.91
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.9
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 99.9
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.9
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.9
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 99.9
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 99.89
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.89
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.89
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 99.89
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.89
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.88
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.88
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 99.87
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 99.86
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.85
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 99.06
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 98.42
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 87.02
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 85.72
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 84.2
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.94  E-value=6.3e-27  Score=188.43  Aligned_cols=84  Identities=21%  Similarity=0.266  Sum_probs=63.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc--------chHHHHHHHHHHHhhhhhccchhheecchHHH
Q psy3982          80 SGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE--------INPLITIWGSVFAKANAVYNPIVYAISHPKFR  151 (185)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr  151 (185)
                      ...++++|++||+++++++|++||+||+++.++..+....        ...++..++.||+++||++||+||+++|++||
T Consensus       399 ~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR  478 (510)
T 4grv_A          399 GSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFR  478 (510)
T ss_dssp             STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            3456788999999999999999999999999987765432        23456778899999999999999999999999


Q ss_pred             HHHHhhcccccc
Q psy3982         152 QALDKKFPSLVC  163 (185)
Q Consensus       152 ~~~~~~~~~~~~  163 (185)
                      ++++++++|+|+
T Consensus       479 ~aFk~iL~C~C~  490 (510)
T 4grv_A          479 QVFLSTLACLCP  490 (510)
T ss_dssp             CC----------
T ss_pred             HHHHHHHhhcCC
Confidence            999999976543
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 185
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 2e-15
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.4 bits (171), Expect = 2e-15
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 16/178 (8%)

Query: 1   MRTRYVPEGNLTACGTDYLTKDWHH--RSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVH 58
             +RY+PEG   +CG DY T        S++I+     + +PLI+I + Y  +V  V   
Sbjct: 174 GWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEA 233

Query: 59  EKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGIL-EM 117
             Q +E A                 AE ++ ++ ++ +  + + W PY  + F     + 
Sbjct: 234 AAQQQESATTQ-------------KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG 280

Query: 118 VEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAAS 175
            +  P+     + FAK +AVYNP++Y + + +FR  +            + ++S+  S
Sbjct: 281 SDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVS 338

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.87
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 90.98
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=5.3e-23  Score=155.56  Aligned_cols=142  Identities=25%  Similarity=0.545  Sum_probs=108.9

Q ss_pred             cccCCccccccccccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCch
Q psy3982           6 VPEGNLTACGTDYLTK--DWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS   83 (185)
Q Consensus         6 ~~~~~~~~C~~~~~~~--~~~~~~y~~~~~~~~~~~p~~i~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (185)
                      ..+.+...|...+...  ......|.++...+.+++|+++++++|.++.+.++++.++.+             ....+.+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~-------------~~~~~~~  245 (348)
T d1u19a_         179 IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ-------------ESATTQK  245 (348)
T ss_dssp             EEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC-------------SSSHHHH
T ss_pred             ccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-------------hhhhhHH
Confidence            3444455555444332  234556777778888899999999999999888875433221             1233456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc-chHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhccc
Q psy3982          84 AEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPS  160 (185)
Q Consensus        84 ~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~  160 (185)
                      +++|++++++.++++|++||+|+.+..++....... ....+..+..+++++|+++||+||.+++++||++++++++|
T Consensus       246 ~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~c  323 (348)
T d1u19a_         246 AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCC  323 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTS
T ss_pred             HHhhHhheEEEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCC
Confidence            789999999999999999999999888876655443 55667788899999999999999999999999999999854
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure