Psyllid ID: psy3983

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MSVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV
Secondary Structure (PSIPRED)
cccccHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEcccccccccccccccccccccccEEcccccEEcccccccccEEEEccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEcccEEEEEcccccccccEEccEcccccEEEEEEEccccccHHHHcccHHHHHHHHHHHHHHHHcccccccHccccccccEEEEHHHEEEEEEEccEEEEEEcccccccEEEEcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msvsplrvmdqhkmspseweSSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDalglniyekednltnvmsqdvkkenplqfkfrakfypedVVEEIIQDITLRLFYLQVSrsagsrvrfppgpnclltpkigfpwseirnisfndrkfiikpidkkapdfvffaprVRVNKRILALCMGnhelymrrrkpdtiDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLElqpirnqsnlnkv
Flexible Loop (DISEMBL)
msvsplrvmdqhkmspsewessiTTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDnltnvmsqdvkkenplqFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAgsrvrfppgpnCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGnhelymrrrkpdTIDVQQMKAQAReeknakqqqrDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTElqlelqpirnqsnlnkv
Low Complexity Region (SEG)
MSVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV
Disordered region (IsUnstruct)
*********************SITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR****************************************************************************************************************
Disordered Region (DISOPRED)
MSVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISF***********************************************************************************************************************************************************
Disordered Region (DISEMBL)
*********************SITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDV*******************KLQLEIAAR***********ERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV
Disordered Region (DISPRO)
MSVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQA***********DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSNLNKV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q29GR8	593	Moesin/ezrin/radixin homo	no	N/A	0.487	0.261	0.784	3e-72
P46150	578	Moesin/ezrin/radixin homo	no	N/A	0.487	0.268	0.773	1e-71
Q170J7	583	Moesin/ezrin/radixin homo	N/A	N/A	0.496	0.271	0.781	2e-71
B0WYY2	572	Moesin/ezrin/radixin homo	N/A	N/A	0.496	0.276	0.769	1e-70
Q7PS12	581	Moesin/ezrin/radixin homo	yes	N/A	0.477	0.261	0.757	5e-69
P52962	572	Moesin OS=Lytechinus vari	N/A	N/A	0.449	0.25	0.575	2e-48
P15311	586	Ezrin OS=Homo sapiens GN=	yes	N/A	0.474	0.257	0.607	2e-46
P26043	583	Radixin OS=Mus musculus G	yes	N/A	0.462	0.252	0.636	3e-46
Q8HZQ5	586	Ezrin OS=Oryctolagus cuni	yes	N/A	0.477	0.259	0.588	6e-46
Q9PU45	583	Radixin OS=Gallus gallus	yes	N/A	0.462	0.252	0.636	8e-46

>sp|Q29GR8|MOEH_DROPS Moesin/ezrin/radixin homolog 1 OS=Drosophila pseudoobscura pseudoobscura GN=Moe PE=3 SV=3

 Score =  272 bits (695), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 135/172 (78%), Positives = 153/172 (88%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISF+++KFIIKPIDKKAPDF+FFAPRVR+NKRILALCMGNHELYMR
Sbjct: 253 LTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRINKRILALCMGNHELYMR 312

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +RLKQ++ EM +
Sbjct: 313 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMER 372

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
             +DL+EAQEMIRRLEEQLKQLQAAK+ELE RQ ELQ  LQ +    N+  V
Sbjct: 373 SQRDLLEAQEMIRRLEEQLKQLQAAKDELELRQKELQSMLQRLEEAKNMEAV 424

Involved in connections of major cytoskeletal structures to the plasma membrane.
Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|P46150|MOEH_DROME Moesin/ezrin/radixin homolog 1 OS=Drosophila melanogaster GN=Moe PE=1 SV=2

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 133/172 (77%), Positives = 153/172 (88%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISF+++KFIIKPIDKKAPDF+FFAPRVR+NKRILALCMGNHELYMR
Sbjct: 235 LTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRINKRILALCMGNHELYMR 294

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +RLKQ++ +M +
Sbjct: 295 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMER 354

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
             +DL+EAQ+MIRRLEEQLKQLQAAK+ELE RQ ELQ  LQ +    N+  V
Sbjct: 355 SQRDLLEAQDMIRRLEEQLKQLQAAKDELELRQKELQAMLQRLEEAKNMEAV 406

Involved in connections of major cytoskeletal structures to the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q170J7|MOEH_AEDAE Moesin/ezrin/radixin homolog 1 OS=Aedes aegypti GN=Moe PE=3 SV=1

 Score =  269 bits (687), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 132/169 (78%), Positives = 151/169 (89%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVR+NKRILALCMGNHELYMR
Sbjct: 240 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMR 299

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +RL+ ++ EM +
Sbjct: 300 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLRTMQEEMER 359

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
              +L+EAQEMIRRLE+QLKQLQ AK+ELEARQ ELQ+ ++ +    N+
Sbjct: 360 SQANLIEAQEMIRRLEDQLKQLQFAKDELEARQNELQVMIKRLEESKNM 408

Involved in connections of major cytoskeletal structures to the plasma membrane.

Aedes aegypti (taxid: 7159)

>sp|B0WYY2|MOEH_CULQU Moesin/ezrin/radixin homolog 1 OS=Culex quinquefasciatus GN=Moe PE=3 SV=1

 Score =  267 bits (682), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/169 (76%), Positives = 150/169 (88%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVR+NKRILALCMGNHELYMR
Sbjct: 230 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMR 289

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +R++ ++ EM +
Sbjct: 290 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRIRNMQEEMER 349

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
              +L+EAQ+MIRRLEEQLKQLQAAK++LE RQ ELQ+ +  +    N+
Sbjct: 350 SQANLIEAQDMIRRLEEQLKQLQAAKDDLEQRQNELQVMITRLEETKNM 398

Involved in connections of major cytoskeletal structures to the plasma membrane.

Culex quinquefasciatus (taxid: 7176)

>sp|Q7PS12|MOEH_ANOGA Moesin/ezrin/radixin homolog 1 OS=Anopheles gambiae GN=Moe PE=3 SV=5

 Score =  261 bits (667), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 128/169 (75%), Positives = 147/169 (86%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVR+NKRILALCMGNHELYMR
Sbjct: 237 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMR 296

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAR+EKNAKQQ+R+KLQL +AARE+AEKK QE  +RL+ ++ EM +
Sbjct: 297 RRKPDTIDVQQMKAQARDEKNAKQQEREKLQLALAARERAEKKQQEYEDRLRSMQEEMER 356

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
           +  +L EAQ+ IRRL+EQL Q+QAAKEELE RQ EL   +Q +    N+
Sbjct: 357 KQANLSEAQDTIRRLQEQLNQVQAAKEELEQRQNELHEMMQRLEETKNM 405

Involved in connections of major cytoskeletal structures to the plasma membrane.

Anopheles gambiae (taxid: 7165)

>sp|P52962|MOES_LYTVA Moesin OS=Lytechinus variegatus PE=3 SV=1

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/160 (57%), Positives = 130/160 (81%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPI+KKAPDFVF+A R+R+NKRILALCMGNHELYMR
Sbjct: 233 LTPKIGFPWSEIRNISFNDKKFVIKPIEKKAPDFVFYASRLRINKRILALCMGNHELYMR 292

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTI+VQQMKAQA+EEK AK+ +R++L +E+  R++ E+K++   +++++ E+   K
Sbjct: 293 RRKPDTIEVQQMKAQAKEEKQAKKLEREQLAIEMKKRQETEEKYKRLQQQIREKELAEEK 352

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306
             +DL   +E  R ++E+LKQ Q   EE +++   +++++
Sbjct: 353 NREDLKRWEEESRAMQEKLKQQQMESEEYQSKVAAMEMQM 392

Probably involved in connections of major cytoskeletal structures to the plasma membrane.

Lytechinus variegatus (taxid: 7654)

>sp|P15311|EZRI_HUMAN Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4

 Score =  186 bits (471), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 120/158 (75%), Gaps = 7/158 (4%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRIL LCMGNHELYMR
Sbjct: 234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILQLCMGNHELYMR 293

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVE-------RLKQ 259
           RRKPDTI+VQQMKAQAREEK+ KQ +R +L+ E   RE  E++ ++ +        RL+ 
Sbjct: 294 RRKPDTIEVQQMKAQAREEKHQKQLERQQLETEKKRRETVEREKEQMMREKEELMLRLQD 353

Query: 260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA 297
            E +  K +++L E  +   +LEE+ K+ Q   E LEA
Sbjct: 354 YEEKTKKAERELSEQIQRALQLEEERKRAQEEAERLEA 391

Probably involved in connections of major cytoskeletal structures to the plasma membrane. In epithelial cells, required for the formation of microvilli and membrane ruffles on the apical pole. Along with PLEKHG6, required for normal macropinocytosis.

Homo sapiens (taxid: 9606)

>sp|P26043|RADI_MOUSE Radixin OS=Mus musculus GN=Rdx PE=1 SV=3

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 122/157 (77%), Gaps = 10/157 (6%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQES-------VERLKQ 259
           RRKPDTI+VQQMKAQAREEK+ KQ +R +L+ E   RE AEK+ +         +ERL+Q
Sbjct: 294 RRKPDTIEVQQMKAQAREEKHQKQLERAQLENEKKKREIAEKEKERIEREKEELMERLRQ 353

Query: 260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296
           +E +  K  ++L   +E  R+  E  ++ Q AKEE E
Sbjct: 354 IEEQTVKAQKEL---EEQTRKALELEQERQRAKEEAE 387

Probably plays a crucial role in the binding of the barbed end of actin filaments to the plasma membrane.

Mus musculus (taxid: 10090)

>sp|Q8HZQ5|EZRI_RABIT Ezrin OS=Oryctolagus cuniculus GN=EZR PE=1 SV=3

 Score =  184 bits (468), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 129/170 (75%), Gaps = 18/170 (10%)

Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
           N  LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRIL LCMGNHEL
Sbjct: 231 NDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILQLCMGNHEL 290

Query: 204 YMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVE 263
           YMRRRKPDTI+VQQMKAQAREEK+ KQ +R +L+        +EKK +E+VE+       
Sbjct: 291 YMRRRKPDTIEVQQMKAQAREEKHQKQLERQQLE--------SEKKRREAVEQ------- 335

Query: 264 MAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEAR-QTELQLELQPIRNQ 312
             +++Q L E +E++ RL++  ++ + A++EL  + Q  LQLE +  R Q
Sbjct: 336 --EKEQMLREKEELMMRLQDYEQKTKKAEKELSDQIQRALQLEDERKRAQ 383

Probably involved in connections of major cytoskeletal structures to the plasma membrane (By similarity). In epithelial cells, required for the formation of microvilli and membrane ruffles on the apical pole. Along with PLEKHG6, required for normal macropinocytosis.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q9PU45|RADI_CHICK Radixin OS=Gallus gallus GN=RDX PE=2 SV=1

 Score =  184 bits (467), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 122/157 (77%), Gaps = 10/157 (6%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQES-------VERLKQ 259
           RRKPDTI+VQQMKAQAREEK+ KQ +R +L+ E   RE AEK+ +         +ERL+Q
Sbjct: 294 RRKPDTIEVQQMKAQAREEKHQKQLERAQLENEKKKREIAEKEKERIEREKEELMERLRQ 353

Query: 260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296
           +E +  K  ++L   +E  RR  E  ++ + AKEE E
Sbjct: 354 IEEQTMKAQKEL---EEQTRRALELDQERKRAKEEAE 387

Probably plays a crucial role in the binding of the barbed end of actin filaments to the plasma membrane.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
325296743	586	ezrin/radixin/moesin [Aplysia californic	0.757	0.411	0.519	2e-76
328697842	572	PREDICTED: moesin/ezrin/radixin homolog	0.481	0.267	0.808	7e-73
296216127	605	PREDICTED: radixin isoform 1 [Callithrix	0.726	0.381	0.518	4e-72
14348876	587	ezrin/radixin/moesin [Biomphalaria glabr	0.713	0.386	0.510	3e-71
357613203	1068	Moesin [Danaus plexippus]	0.522	0.155	0.816	4e-71
289740905	575	radixin [Glossina morsitans morsitans]	0.477	0.264	0.798	8e-71
194769276	646	GF19124 [Drosophila ananassae] gi|190618	0.537	0.264	0.784	1e-70
195163205	647	GL13033 [Drosophila persimilis] gi|19846	0.537	0.264	0.784	2e-70
195042307	645	GH12073 [Drosophila grimshawi] gi|193901	0.537	0.265	0.784	2e-70
195400983	645	GJ15179 [Drosophila virilis] gi|19414174	0.537	0.265	0.784	2e-70

>gi|325296743|ref|NP_001191607.1| ezrin/radixin/moesin [Aplysia californica] gi|71733130|gb|AAZ40190.1| ezrin/radixin/moesin [Aplysia californica]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/306 (51%), Positives = 200/306 (65%), Gaps = 65/306 (21%)

Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
           P RV DQHK+S  +WE  I +W+ EHKGMLREDAM+E+LKIAQDLEMYGVNYFEIKNKKG
Sbjct: 155 PQRVYDQHKLSKDQWEDRIKSWYGEHKGMLREDAMIEFLKIAQDLEMYGVNYFEIKNKKG 214

Query: 65  TELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRL 124
           T+L LGVDALGLN+YEK+D LT                                      
Sbjct: 215 TDLLLGVDALGLNVYEKDDKLT-------------------------------------- 236

Query: 125 FYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFA 184
                      R+ FP              WSEIRNISFND+KFIIKPIDKKAPDFVF+A
Sbjct: 237 ----------PRIGFP--------------WSEIRNISFNDKKFIIKPIDKKAPDFVFYA 272

Query: 185 PRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAARE 244
           PR+R+NKRILALCMGNHELYMRRRKPDTI+VQQMKAQARE+K AKQQ+R +L      RE
Sbjct: 273 PRLRINKRILALCMGNHELYMRRRKPDTIEVQQMKAQAREDKLAKQQERAQLARMRQERE 332

Query: 245 KAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA---RQTE 301
           ++++  ++  E+++ +E E  +R ++L E Q MIR  +E++ +L   +EEL++   R  E
Sbjct: 333 ESDRLRKDLEEKVRIMEEEQKQRMKELEELQGMIRDRDEKVAELTRLREELDSERKRAEE 392

Query: 302 LQLELQ 307
           LQ +++
Sbjct: 393 LQRDIE 398

Source: Aplysia californica

Species: Aplysia californica

Genus: Aplysia

Family: Aplysiidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|328697842|ref|XP_001942978.2| PREDICTED: moesin/ezrin/radixin homolog 1-like [Acyrthosiphon pisum]

 Score =  280 bits (715), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 139/172 (80%), Positives = 153/172 (88%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVR+NKRILALCMGNHELYMR
Sbjct: 236 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMR 295

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEK AKQQQR+KLQLEIAAREKAEKKHQE  ERLK ++ E++K
Sbjct: 296 RRKPDTIDVQQMKAQAREEKLAKQQQREKLQLEIAAREKAEKKHQEYEERLKVMQAEISK 355

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
           R+QDL+ AQ+MIRRLEEQL +LQ AKEELE RQ ELQ  ++ +    N+  V
Sbjct: 356 REQDLLSAQDMIRRLEEQLNKLQLAKEELEQRQNELQKMMERLEESKNMEAV 407

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296216127|ref|XP_002754417.1| PREDICTED: radixin isoform 1 [Callithrix jacchus] gi|390469603|ref|XP_003734146.1| PREDICTED: radixin isoform 2 [Callithrix jacchus]

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 155/299 (51%), Positives = 189/299 (63%), Gaps = 68/299 (22%)

Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
           P RV++QHK++  +WE  I  W +EH+GMLRED+MMEYLKIAQDLEMYGVNYFEIKNKKG
Sbjct: 154 PQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKG 213

Query: 65  TELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRL 124
           TELWLGVDALGLNIYE +D                     +K  P               
Sbjct: 214 TELWLGVDALGLNIYEHDD---------------------SKLTP--------------- 237

Query: 125 FYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFA 184
                      ++ FP              WSEIRNISFND+KF+IKPIDKKAPDFVF+A
Sbjct: 238 -----------KIGFP--------------WSEIRNISFNDKKFVIKPIDKKAPDFVFYA 272

Query: 185 PRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAARE 244
           PR+R+NKRILALCMGNHELYMRRRKPDTI+VQQMKAQAREEK+ KQ +R +L+ E   RE
Sbjct: 273 PRLRINKRILALCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQLERAQLENEKKKRE 332

Query: 245 KAEKKHQES-------VERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296
            AEK+ +         +ERLKQ+E +  K  ++L E       L+++ K+ +   E LE
Sbjct: 333 IAEKEKERIEREKEELMERLKQIEEQTIKAQKELEEQTRKALELDQERKRAKEEAERLE 391

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|14348876|gb|AAK61353.1| ezrin/radixin/moesin [Biomphalaria glabrata]

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 151/296 (51%), Positives = 188/296 (63%), Gaps = 69/296 (23%)

Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
           P RV DQHK++  +WE  I +W+ EHK MLREDAM+EYLKIAQDLEMYGVNYFEIKNKKG
Sbjct: 155 PQRVYDQHKLTKEQWEERIKSWYAEHKAMLREDAMIEYLKIAQDLEMYGVNYFEIKNKKG 214

Query: 65  TELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRL 124
           T+L LGVDALGLN+YEK+D LT                                      
Sbjct: 215 TDLLLGVDALGLNVYEKDDKLT-------------------------------------- 236

Query: 125 FYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFA 184
                      R+ FP              WSEIRNISFND+KF+IKPIDKKAPDFVF+A
Sbjct: 237 ----------PRIGFP--------------WSEIRNISFNDKKFVIKPIDKKAPDFVFYA 272

Query: 185 PRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEK----NAKQQQRDKLQLEI 240
           PR+R+NKRILALCMGNHELYMRRRKPDTI+VQQMKAQAR  +    N K  Q  K++LE 
Sbjct: 273 PRLRINKRILALCMGNHELYMRRRKPDTIEVQQMKAQARGGQTWLNNKKGPQLAKMRLE- 331

Query: 241 AAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296
             RE+++K  ++  E++K +E E  KR ++L + Q MIR  + ++ +L   ++EL+
Sbjct: 332 --REESDKLRKDLEEKVKIMEEEQRKRMKELEDMQHMIRERDAKVAELSRLRDELD 385

Source: Biomphalaria glabrata

Species: Biomphalaria glabrata

Genus: Biomphalaria

Family: Planorbidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|357613203|gb|EHJ68371.1| Moesin [Danaus plexippus]

 Score =  274 bits (700), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 138/169 (81%), Positives = 150/169 (88%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR
Sbjct: 724 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 783

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEK AKQ QR+KLQLEIAARE+AEKK QE  +RL+Q++ EM +
Sbjct: 784 RRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYEDRLRQMQEEMER 843

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
              +L+EAQEMIRRLEEQLKQLQAAKEELE RQ ELQ  +Q +    N+
Sbjct: 844 SQANLIEAQEMIRRLEEQLKQLQAAKEELEQRQNELQAMMQRLEETKNM 892

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740905|gb|ADD19200.1| radixin [Glossina morsitans morsitans]

 Score =  273 bits (698), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 135/169 (79%), Positives = 152/169 (89%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISF+DRKFIIKPIDKKAPDFVFFAPRVR+NKRILALCMGNHELYMR
Sbjct: 235 LTPKIGFPWSEIRNISFSDRKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMR 294

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +RLKQ++ EM +
Sbjct: 295 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMER 354

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
             +DLMEAQE+IRRLEEQLKQ+QA+K+ELE RQ ELQ  LQ +    N+
Sbjct: 355 SQRDLMEAQEIIRRLEEQLKQVQASKDELELRQKELQTMLQRLEEAKNM 403

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194769276|ref|XP_001966732.1| GF19124 [Drosophila ananassae] gi|190618253|gb|EDV33777.1| GF19124 [Drosophila ananassae]

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/172 (78%), Positives = 153/172 (88%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISF+++KFIIKPIDKKAPDF+FFAPRVR+NKRILALCMGNHELYMR
Sbjct: 306 LTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRINKRILALCMGNHELYMR 365

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +RLKQ++ EM +
Sbjct: 366 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMER 425

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
             +DL+EAQEMIRRLEEQLKQLQAAK+ELE RQ ELQ  LQ +    N+  V
Sbjct: 426 SQRDLLEAQEMIRRLEEQLKQLQAAKDELELRQKELQSMLQRLEEAKNMEAV 477

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195163205|ref|XP_002022442.1| GL13033 [Drosophila persimilis] gi|198469306|ref|XP_001354985.2| GA10507 [Drosophila pseudoobscura pseudoobscura] gi|194104434|gb|EDW26477.1| GL13033 [Drosophila persimilis] gi|198146808|gb|EAL32041.2| GA10507 [Drosophila pseudoobscura pseudoobscura]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/172 (78%), Positives = 153/172 (88%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISF+++KFIIKPIDKKAPDF+FFAPRVR+NKRILALCMGNHELYMR
Sbjct: 307 LTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRINKRILALCMGNHELYMR 366

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +RLKQ++ EM +
Sbjct: 367 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMER 426

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
             +DL+EAQEMIRRLEEQLKQLQAAK+ELE RQ ELQ  LQ +    N+  V
Sbjct: 427 SQRDLLEAQEMIRRLEEQLKQLQAAKDELELRQKELQSMLQRLEEAKNMEAV 478

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195042307|ref|XP_001991407.1| GH12073 [Drosophila grimshawi] gi|193901165|gb|EDW00032.1| GH12073 [Drosophila grimshawi]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/172 (78%), Positives = 153/172 (88%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISF+++KFIIKPIDKKAPDF+FFAPRVR+NKRILALCMGNHELYMR
Sbjct: 305 LTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRINKRILALCMGNHELYMR 364

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +RLKQ++ EM +
Sbjct: 365 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMER 424

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
             +DL+EAQEMIRRLEEQLKQLQAAK+ELE RQ ELQ  LQ +    N+  V
Sbjct: 425 SQRDLLEAQEMIRRLEEQLKQLQAAKDELELRQKELQSMLQRLEEAKNMEAV 476

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195400983|ref|XP_002059095.1| GJ15179 [Drosophila virilis] gi|194141747|gb|EDW58164.1| GJ15179 [Drosophila virilis]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/172 (78%), Positives = 153/172 (88%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISF+++KFIIKPIDKKAPDF+FFAPRVR+NKRILALCMGNHELYMR
Sbjct: 305 LTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRINKRILALCMGNHELYMR 364

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +RLKQ++ EM +
Sbjct: 365 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMER 424

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
             +DL+EAQEMIRRLEEQLKQLQAAK+ELE RQ ELQ  LQ +    N+  V
Sbjct: 425 SQRDLLEAQEMIRRLEEQLKQLQAAKDELELRQKELQSMLQRLEEAKNMEAV 476

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
UNIPROTKB|Q170J7	583	Moe "Moesin/ezrin/radixin homo	0.531	0.289	0.781	1e-107
UNIPROTKB|B0WYY2	572	Moe "Moesin/ezrin/radixin homo	0.531	0.295	0.769	4.5e-107
UNIPROTKB|Q29GR8	593	Moe "Moesin/ezrin/radixin homo	0.540	0.290	0.784	1.2e-106
FB|FBgn0011661	578	Moe "Moesin" [Drosophila melan	0.540	0.297	0.773	4e-106
UNIPROTKB|Q7PS12	581	Moe "Moesin/ezrin/radixin homo	0.531	0.290	0.757	1.3e-105
UNIPROTKB|P26038	577	MSN "Moesin" [Homo sapiens (ta	0.528	0.291	0.602	6.5e-83
UNIPROTKB|A7YIJ8	604	RDX "Radixin isoform b" [Homo	0.477	0.251	0.629	8.3e-83
UNIPROTKB|P35241	583	RDX "Radixin" [Homo sapiens (t	0.477	0.260	0.629	8.3e-83
UNIPROTKB|F1MJJ8	583	RDX "Radixin" [Bos taurus (tax	0.484	0.264	0.621	8.3e-83
UNIPROTKB|Q32LP2	583	RDX "Radixin" [Bos taurus (tax	0.484	0.264	0.621	8.3e-83

UNIPROTKB|Q170J7 Moe "Moesin/ezrin/radixin homolog 1" [Aedes aegypti (taxid:7159)]

 Score = 685 (246.2 bits), Expect = 1.0e-107, Sum P(2) = 1.0e-107
 Identities = 132/169 (78%), Positives = 151/169 (89%)

Query:   147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
             LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVR+NKRILALCMGNHELYMR
Sbjct:   240 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMR 299

Query:   207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
             RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +RL+ ++ EM +
Sbjct:   300 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLRTMQEEMER 359

Query:   267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
                +L+EAQEMIRRLE+QLKQLQ AK+ELEARQ ELQ+ ++ +    N+
Sbjct:   360 SQANLIEAQEMIRRLEDQLKQLQFAKDELEARQNELQVMIKRLEESKNM 408

GO:0003779 "actin binding" evidence=ISS

GO:0005912 "adherens junction" evidence=ISS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=ISS

UNIPROTKB|B0WYY2 Moe "Moesin/ezrin/radixin homolog 1" [Culex quinquefasciatus (taxid:7176)]

 Score = 679 (244.1 bits), Expect = 4.5e-107, Sum P(2) = 4.5e-107
 Identities = 130/169 (76%), Positives = 150/169 (88%)

Query:   147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
             LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVR+NKRILALCMGNHELYMR
Sbjct:   230 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMR 289

Query:   207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
             RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +R++ ++ EM +
Sbjct:   290 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRIRNMQEEMER 349

Query:   267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
                +L+EAQ+MIRRLEEQLKQLQAAK++LE RQ ELQ+ +  +    N+
Sbjct:   350 SQANLIEAQDMIRRLEEQLKQLQAAKDDLEQRQNELQVMITRLEETKNM 398

GO:0003779 "actin binding" evidence=ISS

GO:0005912 "adherens junction" evidence=ISS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=ISS

UNIPROTKB|Q29GR8 Moe "Moesin/ezrin/radixin homolog 1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 695 (249.7 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
 Identities = 135/172 (78%), Positives = 153/172 (88%)

Query:   147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
             LTPKIGFPWSEIRNISF+++KFIIKPIDKKAPDF+FFAPRVR+NKRILALCMGNHELYMR
Sbjct:   253 LTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRINKRILALCMGNHELYMR 312

Query:   207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
             RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +RLKQ++ EM +
Sbjct:   313 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEEMER 372

Query:   267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
               +DL+EAQEMIRRLEEQLKQLQAAK+ELE RQ ELQ  LQ +    N+  V
Sbjct:   373 SQRDLLEAQEMIRRLEEQLKQLQAAKDELELRQKELQSMLQRLEEAKNMEAV 424

GO:0003779 "actin binding" evidence=ISS

GO:0005912 "adherens junction" evidence=ISS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=ISS

FB|FBgn0011661 Moe "Moesin" [Drosophila melanogaster (taxid:7227)]

 Score = 690 (248.0 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
 Identities = 133/172 (77%), Positives = 153/172 (88%)

Query:   147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
             LTPKIGFPWSEIRNISF+++KFIIKPIDKKAPDF+FFAPRVR+NKRILALCMGNHELYMR
Sbjct:   235 LTPKIGFPWSEIRNISFSEKKFIIKPIDKKAPDFMFFAPRVRINKRILALCMGNHELYMR 294

Query:   207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
             RRKPDTIDVQQMKAQAREEKNAKQQ+R+KLQL +AARE+AEKK QE  +RLKQ++ +M +
Sbjct:   295 RRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQEDMER 354

Query:   267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
               +DL+EAQ+MIRRLEEQLKQLQAAK+ELE RQ ELQ  LQ +    N+  V
Sbjct:   355 SQRDLLEAQDMIRRLEEQLKQLQAAKDELELRQKELQAMLQRLEEAKNMEAV 406

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=NAS;IDA

GO:0045169 "fusome" evidence=IDA

GO:0005912 "adherens junction" evidence=NAS

GO:0003779 "actin binding" evidence=NAS

GO:0008092 "cytoskeletal protein binding" evidence=IEA;ISS

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0007314 "oocyte anterior/posterior axis specification" evidence=IMP

GO:0030029 "actin filament-based process" evidence=NAS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0016336 "establishment or maintenance of polarity of larval imaginal disc epithelium" evidence=IMP

GO:0035003 "subapical complex" evidence=TAS

GO:0042052 "rhabdomere development" evidence=IMP

GO:0045313 "rhabdomere membrane biogenesis" evidence=IMP

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0007318 "pole plasm protein localization" evidence=TAS

GO:0008104 "protein localization" evidence=TAS

GO:0007315 "pole plasm assembly" evidence=TAS

GO:0042462 "eye photoreceptor cell development" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=TAS

GO:0002009 "morphogenesis of an epithelium" evidence=TAS

GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=TAS

GO:0009952 "anterior/posterior pattern specification" evidence=TAS

GO:0016057 "regulation of membrane potential in photoreceptor cell" evidence=IDA

GO:0042048 "olfactory behavior" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|Q7PS12 Moe "Moesin/ezrin/radixin homolog 1" [Anopheles gambiae (taxid:7165)]

 Score = 665 (239.2 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
 Identities = 128/169 (75%), Positives = 147/169 (86%)

Query:   147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
             LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVR+NKRILALCMGNHELYMR
Sbjct:   237 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMR 296

Query:   207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
             RRKPDTIDVQQMKAQAR+EKNAKQQ+R+KLQL +AARE+AEKK QE  +RL+ ++ EM +
Sbjct:   297 RRKPDTIDVQQMKAQARDEKNAKQQEREKLQLALAARERAEKKQQEYEDRLRSMQEEMER 356

Query:   267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
             +  +L EAQ+ IRRL+EQL Q+QAAKEELE RQ EL   +Q +    N+
Sbjct:   357 KQANLSEAQDTIRRLQEQLNQVQAAKEELEQRQNELHEMMQRLEETKNM 405

GO:0003779 "actin binding" evidence=ISS

GO:0005912 "adherens junction" evidence=ISS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=ISS

UNIPROTKB|P26038 MSN "Moesin" [Homo sapiens (taxid:9606)]

 Score = 511 (184.9 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
 Identities = 109/181 (60%), Positives = 135/181 (74%)

Query:   144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
             N  LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHEL
Sbjct:   231 NDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHEL 290

Query:   204 YMRRRKPDTIDVQQMKAQAREEKNAKQQQR-----DKLQLEIAAREKA--EKKHQESVER 256
             YMRRRKPDTI+VQQMKAQAREEK+ KQ +R     +K + E+A +EK   E++ +E +ER
Sbjct:   291 YMRRRKPDTIEVQQMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEELMER 350

Query:   257 LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQA-----AKEELEARQTELQLELQPIRN 311
             LKQ+E +  K  Q+L E       LE++ K+ Q+     AKE  EA + +  L LQ  R+
Sbjct:   351 LKQIEEQTKKAQQELEEQTRRALELEQERKRAQSEAEKLAKERQEAEEAKEAL-LQASRD 409

Query:   312 Q 312
             Q
Sbjct:   410 Q 410

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0001931 "uropod" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0031528 "microvillus membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005102 "receptor binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0019901 "protein kinase binding" evidence=IPI

GO:2000401 "regulation of lymphocyte migration" evidence=IMP

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0007159 "leukocyte cell-cell adhesion" evidence=IEP

GO:0050900 "leukocyte migration" evidence=IEP

GO:0005902 "microvillus" evidence=IDA

GO:0022614 "membrane to membrane docking" evidence=IEP

GO:0030175 "filopodium" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0050839 "cell adhesion molecule binding" evidence=IPI

GO:0005925 "focal adhesion" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|A7YIJ8 RDX "Radixin isoform b" [Homo sapiens (taxid:9606)]

 Score = 497 (180.0 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
 Identities = 102/162 (62%), Positives = 126/162 (77%)

Query:   147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
             LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct:   234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293

Query:   207 RRKPDTIDVQQMKAQAREEKNAKQQQR-----DKLQLEIAAREKA--EKKHQESVERLKQ 259
             RRKPDTI+VQQMKAQAREEK+ KQ +R     +K + EIA +EK   E++ +E +ERLKQ
Sbjct:   294 RRKPDTIEVQQMKAQAREEKHQKQLERAQLENEKKKREIAEKEKERIEREKEELMERLKQ 353

Query:   260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTE 301
             +E +  K  ++L E       L+++ K+   AKEE E  + E
Sbjct:   354 IEEQTIKAQKELEEQTRKALELDQERKR---AKEEAERLEKE 392

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P35241 RDX "Radixin" [Homo sapiens (taxid:9606)]

 Score = 497 (180.0 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
 Identities = 102/162 (62%), Positives = 126/162 (77%)

Query:   147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
             LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct:   234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293

Query:   207 RRKPDTIDVQQMKAQAREEKNAKQQQR-----DKLQLEIAAREKA--EKKHQESVERLKQ 259
             RRKPDTI+VQQMKAQAREEK+ KQ +R     +K + EIA +EK   E++ +E +ERLKQ
Sbjct:   294 RRKPDTIEVQQMKAQAREEKHQKQLERAQLENEKKKREIAEKEKERIEREKEELMERLKQ 353

Query:   260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTE 301
             +E +  K  ++L E       L+++ K+   AKEE E  + E
Sbjct:   354 IEEQTIKAQKELEEQTRKALELDQERKR---AKEEAERLEKE 392

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051693 "actin filament capping" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030033 "microvillus assembly" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005925 "focal adhesion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1MJJ8 RDX "Radixin" [Bos taurus (taxid:9913)]

 Score = 497 (180.0 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
 Identities = 102/164 (62%), Positives = 127/164 (77%)

Query:   147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
             LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct:   234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293

Query:   207 RRKPDTIDVQQMKAQAREEKNAKQQQR-----DKLQLEIAAREKA--EKKHQESVERLKQ 259
             RRKPDTI+VQQMKAQAREEK+ KQ +R     +K + EIA +EK   E++ +E +ERL+Q
Sbjct:   294 RRKPDTIEVQQMKAQAREEKHQKQLERAQLENEKKKREIAEKEKERIEREKEELMERLRQ 353

Query:   260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
             +E +  K  ++L E       L+++ K+   AKEE E  + E Q
Sbjct:   354 IEEQTMKAQKELEEQTRKALELDQERKR---AKEEAERLEKERQ 394

GO:0045177 "apical part of cell" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0030033 "microvillus assembly" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q32LP2 RDX "Radixin" [Bos taurus (taxid:9913)]

 Score = 497 (180.0 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
 Identities = 102/164 (62%), Positives = 127/164 (77%)

Query:   147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
             LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct:   234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293

Query:   207 RRKPDTIDVQQMKAQAREEKNAKQQQR-----DKLQLEIAAREKA--EKKHQESVERLKQ 259
             RRKPDTI+VQQMKAQAREEK+ KQ +R     +K + EIA +EK   E++ +E +ERL+Q
Sbjct:   294 RRKPDTIEVQQMKAQAREEKHQKQLERAQLENEKKKREIAEKEKERIEREKEELMERLRQ 353

Query:   260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
             +E +  K  ++L E       L+++ K+   AKEE E  + E Q
Sbjct:   354 IEEQTMKAQKELEEQTRKALELDQERKR---AKEEAERLEKERQ 394

GO:0032154 "cleavage furrow" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0051693 "actin filament capping" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P26043	RADI_MOUSE	No assigned EC number	0.6369	0.4622	0.2521	yes	N/A
Q8HZQ5	EZRI_RABIT	No assigned EC number	0.5882	0.4779	0.2593	yes	N/A
Q9PU45	RADI_CHICK	No assigned EC number	0.6369	0.4622	0.2521	yes	N/A
Q32LP2	RADI_BOVIN	No assigned EC number	0.6158	0.4842	0.2641	yes	N/A
Q7PS12	MOEH_ANOGA	No assigned EC number	0.7573	0.4779	0.2616	yes	N/A
P15311	EZRI_HUMAN	No assigned EC number	0.6075	0.4748	0.2576	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	318
cd13194	97	cd13194, FERM_C_ERM, ERM family FERM domain C-lobe	9e-44
pfam09380	90	pfam09380, FERM_C, FERM C-terminal PH-like domain	3e-21
cd13194	97	cd13194, FERM_C_ERM, ERM family FERM domain C-lobe	1e-19
cd00836	91	cd00836, FERM_C-lobe, FERM domain C-lobe	2e-12
pfam00373	113	pfam00373, FERM_M, FERM central domain	1e-11
smart00295	201	smart00295, B41, Band 4	1e-11
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	7e-09
cd13189	123	cd13189, FERM_C_PTPN4_PTPN3_like, Protein tyrosine	7e-08
cd13187	124	cd13187, FERM_C_PTPH13, Protein tyrosine phosphata	1e-06
cd13199	176	cd13199, FERM_C2_MyoVII, Myosin VII (MyoVII, Myo7)	2e-06
cd13184	113	cd13184, FERM_C_4_1_family, Protein 4	7e-06
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	1e-05
pfam09380	90	pfam09380, FERM_C, FERM C-terminal PH-like domain	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
cd13191	115	cd13191, FERM_C_FRMD4A_FRMD4B, FERM domain-contain	2e-05
COG1842	225	COG1842, PspA, Phage shock protein A (IM30), suppr	2e-05
cd13185	109	cd13185, FERM_C_FRMD1_FRMD6, FERM domain containin	2e-05
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	3e-05
cd13195	131	cd13195, FERM_C_MYLIP_IDOL, The E3 ubiquitin ligas	3e-05
cd13202	111	cd13202, FERM_C_MyoX, Myosin X (MyoX, Myo10) FERM	3e-05
smart00295	201	smart00295, B41, Band 4	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-05
COG3064	387	COG3064, TolA, Membrane protein involved in colici	9e-05
cd13187	124	cd13187, FERM_C_PTPH13, Protein tyrosine phosphata	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	2e-04
cd13192	105	cd13192, FERM_C_FRMD3_FRMD5, FERM domain-containin	2e-04
TIGR03346	852	TIGR03346, chaperone_ClpB, ATP-dependent chaperone	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	4e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.001
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.001
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.001
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	0.001
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.002
pfam03961	450	pfam03961, DUF342, Protein of unknown function (DU	0.002
pfam12795	239	pfam12795, MscS_porin, Mechanosensitive ion channe	0.002
COG3096	1480	COG3096, MukB, Uncharacterized protein involved in	0.002
cd13188	111	cd13188, FERM_C_PTPN14_PTPN21, Protein tyrosine ph	0.002
PRK11637	428	PRK11637, PRK11637, AmiB activator; Provisional	0.002
TIGR03346	852	TIGR03346, chaperone_ClpB, ATP-dependent chaperone	0.003
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	0.003
pfam08703	181	pfam08703, PLC-beta_C, PLC-beta C terminal	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.004
pfam04012	220	pfam04012, PspA_IM30, PspA/IM30 family	0.004
pfam00012	598	pfam00012, HSP70, Hsp70 protein	0.004

>gnl|CDD|241348 cd13194, FERM_C_ERM, ERM family FERM domain C-lobe/F3

 Score =  145 bits (367), Expect = 9e-44
 Identities = 56/67 (83%), Positives = 62/67 (92%)

Query: 143 PNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202
               LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF++PR+R+NKRIL LCMGNHE
Sbjct: 31  LENKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYSPRLRINKRILDLCMGNHE 90

Query: 203 LYMRRRK 209
           LYMRRRK
Sbjct: 91  LYMRRRK 97

The ERM family includes ezrin, radixin, moesin and merlin. They are composed of a N-terminal FERM (ERM) domain (also called N-ERMAD (N-terminal ERM association domain)), a coiled coil region (CRR), and a C-terminal domain CERMAD (C-terminal ERM association domain) which has an F-actin-binding site (ABD). Two actin-binding sites have been identified in the middle and N-terminal domains. Merlin is structurally similar to the ERM proteins, but instead of an actin-binding domain (ABD), it contains a C-terminal domain (CTD), just like the proteins from the 4.1 family. Activated ezrin, radixin and moesin are thought to be involved in the linking of actin filaments to CD43, CD44, ICAM1-3 cell adhesion molecules, various membrane channels and receptors, such as the Na+/H+ exchanger-3 (NHE3), cystic fibrosis transmembrane conductance regulator (CFTR), and the beta2-adrenergic receptor. The ERM proteins exist in two states, a dormant state in which the FERM domain binds to its own C-terminal tail and thereby precludes binding of some partner proteins, and an activated state, in which the FERM domain binds to one of many membrane binding proteins and the C-terminal tail binds to F-actin. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain of ERM is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 97

>gnl|CDD|220216 pfam09380, FERM_C, FERM C-terminal PH-like domain

 Score = 86.2 bits (214), Expect = 3e-21
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 151 IGFPWSEIRNISFNDRKFIIKPID---KKAPDFVFFAPRVRVNKRILALCMGNHELYMRR 207
             FPWSEIR ISF  +KF+IK  D    K     F+ P  R  K +  LC+  H  +  R
Sbjct: 26  NTFPWSEIRKISFKRKKFLIKLRDEDESKETTLTFYTPSPRACKYLWKLCVEQHAFFRLR 85

Query: 208 RKPDT 212
           R PDT
Sbjct: 86  RPPDT 90

Length = 90

>gnl|CDD|241348 cd13194, FERM_C_ERM, ERM family FERM domain C-lobe/F3

 Score = 81.5 bits (202), Expect = 1e-19
 Identities = 32/40 (80%), Positives = 35/40 (87%)

Query: 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMS 90
          MYGVNYFEIKNKKGT+LWLGVDALGLNIYE E+ LT  + 
Sbjct: 1  MYGVNYFEIKNKKGTDLWLGVDALGLNIYELENKLTPKIG 40

The ERM family includes ezrin, radixin, moesin and merlin. They are composed of a N-terminal FERM (ERM) domain (also called N-ERMAD (N-terminal ERM association domain)), a coiled coil region (CRR), and a C-terminal domain CERMAD (C-terminal ERM association domain) which has an F-actin-binding site (ABD). Two actin-binding sites have been identified in the middle and N-terminal domains. Merlin is structurally similar to the ERM proteins, but instead of an actin-binding domain (ABD), it contains a C-terminal domain (CTD), just like the proteins from the 4.1 family. Activated ezrin, radixin and moesin are thought to be involved in the linking of actin filaments to CD43, CD44, ICAM1-3 cell adhesion molecules, various membrane channels and receptors, such as the Na+/H+ exchanger-3 (NHE3), cystic fibrosis transmembrane conductance regulator (CFTR), and the beta2-adrenergic receptor. The ERM proteins exist in two states, a dormant state in which the FERM domain binds to its own C-terminal tail and thereby precludes binding of some partner proteins, and an activated state, in which the FERM domain binds to one of many membrane binding proteins and the C-terminal tail binds to F-actin. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain of ERM is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 97

>gnl|CDD|241233 cd00836, FERM_C-lobe, FERM domain C-lobe

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 21/58 (36%), Positives = 25/58 (43%)

Query: 148 TPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYM 205
            P   F W EIR ISF+ + F I+    K     F     R  K I  LC+G H  Y 
Sbjct: 34  NPLTLFRWPEIRKISFSKKTFTIEIRGDKEEKLAFQTSSPREAKYIWKLCVGYHRFYR 91

The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 91

>gnl|CDD|215882 pfam00373, FERM_M, FERM central domain

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 11  QHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYF 57
             K    E E  I    K  +G+   +A ++YL+IAQ L  YGV +F
Sbjct: 67  IKKEKSKELEKRILEAHKNLRGLSPAEAKLKYLQIAQSLPTYGVTFF 113

This domain is the central structural domain of the FERM domain. Length = 113

>gnl|CDD|214604 smart00295, B41, Band 4

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYF 57
           P +++D       EW   I    KE  G+  E+A ++YL++A+ L  YGV  F
Sbjct: 151 PKQLLDS--RKLKEWRERIVELHKELIGLSPEEAKLKYLELARKLPTYGVELF 201

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs. Length = 201

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 24/71 (33%), Positives = 44/71 (61%)

Query: 244 EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
           E+AE++ QE  ER++Q+E +M +  ++L E +E    LEE+LKQ +   + LE +  EL+
Sbjct: 1   EEAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELE 60

Query: 304 LELQPIRNQSN 314
            E + +  ++ 
Sbjct: 61  EENRRLEEEAA 71

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|241343 cd13189, FERM_C_PTPN4_PTPN3_like, Protein tyrosine phosphatase non-receptor proteins 3 and 4 (PTPN4 and PTPN3) FERM domain C-lobe

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 32 GMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEK 81
          G    +A   +L  A+ LE+YGV     ++    EL +GV + G+ +++ 
Sbjct: 1  GQSPAEAEFNFLNTARTLELYGVELHSARDASNLELQVGVTSGGILVFQN 50

PTPN4 (also called PTPMEG, protein tyrosine phosphatase, megakaryocyte) is a cytoplasmic protein-tyrosine phosphatase (PTP) thought to play a role in cerebellar function. PTPMEG-knockout mice have impaired memory formation and cerebellar long-term depression. PTPN3/PTPH1 is a membrane-associated PTP that is implicated in regulating tyrosine phosphorylation of growth factor receptors, p97 VCP (valosin-containing protein, or Cdc48 in Saccharomyces cerevisiae), and HBV (Hepatitis B Virus) gene expression; it is mutated in a subset of colon cancers. PTPMEG and PTPN3/PTPH1 contains a N-terminal FERM domain, a middle PDZ domain, and a C-terminal phosphatase domain. PTP1/Tyrosine-protein phosphatase 1 from nematodes and a FERM_C repeat 1 from Tetraodon nigroviridis also included in this cd. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 123

>gnl|CDD|241341 cd13187, FERM_C_PTPH13, Protein tyrosine phosphatase non-receptor 13 (PTPH13) FERM domain C-lobe

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 32  GMLREDAMMEYLKIAQDLEMYGVNY---FEIKNKKGTELWLGVDALGLNIYEKEDNLTNV 88
           G+  E+A +E+LK+ Q L  YGV++   +  K      +WLG+ + G+ IYE  +     
Sbjct: 1   GLSEEEAELEFLKVCQKLPEYGVHFHRVYREKKSSTGGIWLGICSRGIIIYEVHNGARTP 60

Query: 89  MS----QDVKKENPLQFKFRAKF 107
           +     ++ KK   + F  R KF
Sbjct: 61  VLRFPWRETKK---ISFD-RKKF 79

There are many functions of PTPN13 (also called PTPL1, PTP-BAS, hPTP1E, FAP1, or PTPL1). Mice lacking PTPN13 activity have abnormal regulation of signal transducer and activator of transcription signaling in their T cells, mild impairment of motor nerve repair, and a significant reduction in the growth of retinal glia cultures. It also plays a role in adipocyte differentiation. PTPN13 contains a kinase non-catalytic C-lobe domain (KIND), a FERM domain with two potential phosphatidylinositol 4,5-biphosphate [PtdIns(4,5)P2]-binding motifs, 5 PDZ domains, and a carboxy-terminal catalytic domain. There is an nteraction between the FERM domain of PTPL1 and PtdIns(4,5)P2 which is thought to regulate the membrane localization of PTPN13. PDZ are protein/protein interaction domains so there is the potential for numerous partners that can actively participate in the regulation of its phosphatase activity or can permit direct or indirect recruitment of tyrosine phosphorylated PTPL1 substrates. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 124

>gnl|CDD|241353 cd13199, FERM_C2_MyoVII, Myosin VII (MyoVII, Myo7) FERM domain C-lobe, repeat 2

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 13 KMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIK 60
            SP EW+  I   + +H GM  E+A + +LKI      +G  +FE+K
Sbjct: 41 LQSPDEWKKLIIAAYNKHAGMSSEEAKLAFLKIIYRWPTFGSAFFEVK 88

MyoVII, a MyTH-FERM myosin, is an actin-based motor protein essential for a variety of biological processes in the actin cytoskeleton function. Mutations in MyoVII leads to problems in sensory perception: deafness and blindness in humans (Usher Syndrome), retinal defects and deafness in mice (shaker 1), and aberrant auditory and vestibular function in zebrafish. Myosin VIIAs have plus (barbed) end-directed motor activity on actin filaments and a characteristic actin-activated ATPase activity. MyoVII consists of a conserved spectrin-like, SH3 subdomain N-terminal region, a motor/head region, a neck made of 4-5 IQ motifs, and a tail consisting of a coiled-coil domain, followed by a tandem repeat of myosin tail homology 4 (MyTH4) domains and partial FERM domains that are separated by an SH3 subdomain and are thought to mediate dimerization and binding to other proteins or cargo. Members include: MyoVIIa, MyoVIIb, and MyoVII members that do not have distinct myosin VIIA and myosin VIIB genes. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 176

>gnl|CDD|241338 cd13184, FERM_C_4_1_family, Protein 4

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 32 GMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYE 80
          G    +A + +L+ A+ L +YGV+    K+ +G ++ LGV A G+ +Y 
Sbjct: 1  GQTPAEAELHFLENAKKLALYGVDLHPAKDSEGVDIMLGVCAGGILVYR 49

1 family FERM domain C-lobe. The protein 4.1 family includes four well-defined members: erythroid protein 4.1 (4.1R), the bestknown and characterized member, 4.1G (general), 4.1N (neuronal), and 4.1 B (brain). The less well understood 4.1O/FRMD3 is not a true member of this family and is not included in this hierarchy. Besides three highly conserved domains, FERM, SAB (spectrin and actin binding domain) and CTD (C-terminal domain), the proteins from this family contain several unique domains: U1, U2 and U3. FERM domains like other members of the FERM domain superfamily have a cloverleaf architecture with three distinct lobes (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The brain is a particularly rich source of protein 4.1 isoforms. The various 4.1R, 4.1G, 4.1N, and 4.1B mRNAs are all expressed in distinct patterns within the brain. It is likely that 4.1 proteins play important functional roles in the brain including motor coordination and spatial learning, postmitotic differentiation, and synaptic architecture and function. In addition they are found in nonerythroid, nonneuronal cells where they may play a general structural role in nuclear architecture and/or may interact with splicing factors. The FERM C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 113

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 14/97 (14%), Positives = 43/97 (44%)

Query: 220 AQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIR 279
            + ++E    Q++  +LQ ++A  ++  ++ ++ +  L+     + K    + +      
Sbjct: 69  PELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAI 128

Query: 280 RLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLN 316
            L+E+ ++L+    EL+     L+ E + ++      
Sbjct: 129 ELDEENRELREELAELKQENEALEAENERLQENEQRR 165

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|220216 pfam09380, FERM_C, FERM C-terminal PH-like domain

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 61  NKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDI 120
           +KKGT+LWLGV A G+ +YE  + +      +++K   + FK R KF  +   E+  ++ 
Sbjct: 1   DKKGTDLWLGVSAKGILVYEDNNKINTFPWSEIRK---ISFK-RKKFLIKLRDEDESKET 56

Query: 121 TLRLFYLQVSRSA 133
           TL  FY    R+ 
Sbjct: 57  TLT-FYTPSPRAC 68

Length = 90

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 11/107 (10%)

Query: 219 KAQAREEKNAKQQQRDKLQLEIAARE-----------KAEKKHQESVERLKQLEVEMAKR 267
             + +EE    +++ ++L  E+   E           + E++ +E  + L  L  E+++ 
Sbjct: 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300

Query: 268 DQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
           +Q     +E +  LE QL++L+A  EELE++  EL  EL  +  +  
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 211 DTIDVQQMKAQAREEKNAKQQQRDKLQLEIA----AREKAEKKHQESVERLKQLEVEMAK 266
                ++      E+     +  + L  EI       E+ E + +  +     LE  +A 
Sbjct: 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
              +L E  E +R LE +  +L+   EEL  +  +L+L L+ +  +
Sbjct: 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|241345 cd13191, FERM_C_FRMD4A_FRMD4B, FERM domain-containing protein 4A and 4B (FRMD4A and 4B) FERM domain C-lobe

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 75/173 (43%)

Query: 50  EMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYP 109
             YGV+Y+E+K+K G   WLG+   G+  Y+ +D           K  P       K + 
Sbjct: 1   PTYGVHYYEVKDKNGIPWWLGLSYKGIGQYDLQD-----------KVKP------RKLFQ 43

Query: 110 EDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFI 169
                                                        W ++ N+ F DRKF 
Sbjct: 44  ---------------------------------------------WKQLENLYFRDRKFS 58

Query: 170 IKPID-KKAPD------------FVFFAPRVRVNKRILALCMGNHELYMRRRK 209
           I+  D ++                V++     + K I ++ +  H+ Y+ R++
Sbjct: 59  IEVHDPRRISVSRRTFGQSGVAVHVWYGNTPSLIKSIWSMAISQHQFYLDRKQ 111

FRMD4A is part of the Par-3/FRMD4A/cytohesin-1 complex that activates Arf6, a central player in actin cytoskeleton dynamics and membrane trafficking, during junctional remodeling and epithelial polarization. The Par-3/Par-6/aPKC/Cdc42 complex regulates the conversion of primordial adherens junctions (AJs) into belt-like AJs and the formation of linear actin cables. When primordial AJs are formed, Par-3 recruits scaffolding protein FRMD4A which connects Par-3 and the Arf6 guanine-nucleotide exchange factor (GEF), cytohesin-1. FRMD4B (also called GRP1-binding protein, GRSP1) is a novel member of GRP1 signaling complexes that are recruited to plasma membrane ruffles in response to insulin receptor signaling. The GRSP1/FRMD4B protein contains a FERM protein domain as well as two coiled coil domains and may function as a scaffolding protein. GRP1 and GRSP1 interact through the coiled coil domains in the two proteins. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 115

>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 9/126 (7%)

Query: 202 ELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAARE-KAEKKHQ--------E 252
           E  +R  + +    +Q  AQA   +   +++ ++ Q      E KAE   Q        E
Sbjct: 30  EQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLARE 89

Query: 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
           ++E  + LE      + +L +A+E + +L++QL  L+    EL A++  L+      + Q
Sbjct: 90  ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQ 149

Query: 313 SNLNKV 318
             +N+ 
Sbjct: 150 EKVNRS 155

Length = 225

>gnl|CDD|241339 cd13185, FERM_C_FRMD1_FRMD6, FERM domain containing 1 and 6 proteins FERM domain C-lobe

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 141 PGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPD-FVFFAPRVRVNKRILALCMG 199
            G   LL     FPWS I  +SF+ +KF I+P    +     ++      +K +LALC  
Sbjct: 37  DGEKQLLRT---FPWSNIGKLSFDRKKFEIRPEGLPSLRKLTYYTGSDEKSKYLLALCRE 93

Query: 200 NHELYMR 206
            H+  M 
Sbjct: 94  THQFSMA 100

FRMD6 (also called willin and hEx/human expanded) is localized throughout the cytoplasm or along the plasma membrane The Drosophilla protein Ex is a regulator of the Hippo/SWH (Sav/Wts/Hpo) signaling pathway, a signaling pathway that plays a pivotal role in organ size control and is tumor suppression by restricting proliferation and promoting apoptosis. Surprisingly, hEx is thought to function independently of the Hippo pathway. Instead it is hypothesized that hEx inhibits progression through the S phase of the cell cycle by upregulating p21(Cip1) and downregulating Cyclin A. It is also implicated in the progression of Alzheimer disease. Not much is known about FRMD1 to date. Both FRMD1 and FRMD6 contains a single FERM domain which has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe is a member of the PH superfamily. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 109

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 26/89 (29%), Positives = 44/89 (49%)

Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
           +QQ  A+ +EE    Q+Q  +LQ E    ++     +  +ERL++    + +   + +E 
Sbjct: 71  LQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIEL 130

Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQ 303
            E  R L E+L +L+   E LEA    LQ
Sbjct: 131 DEENRELREELAELKQENEALEAENERLQ 159

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|241349 cd13195, FERM_C_MYLIP_IDOL, The E3 ubiquitin ligase myosin regulatory light chain-interacting protein (MYLIP; also called inducible degrader of the LDL receptor, IDOL) FERM domain C-lobe

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 32 GMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTN 87
          GM    A   +LK   +LE YGV  F ++  +G +L +GV   G+ I   +  L  
Sbjct: 1  GMSPSTAEYLFLKEVSELENYGVETFHVRTIEGQKLVIGVGPDGIRICNDDGELIQ 56

MYLIP/IDOL is a regulator of the LDL receptor (LDLR) pathway via the nuclear receptor liver X receptor (LXR). In response to cellular cholesterol loading, the activation of LXR leads to the induction of MYLIP expression. MYLIP stimulates ubiquitination of the LDLR on its cytoplasmic tail, directing its degradation. The LXR-MYLIP-LDLR pathway provides a complementary pathway to sterol regulatory element-binding proteins for the feedback inhibition of cholesterol uptake. MYLIP has an N-terminal FERM domain and in some cases a C-terminal RING domain. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 131

>gnl|CDD|241356 cd13202, FERM_C_MyoX, Myosin X (MyoX, Myo10) FERM domain C-lobe

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 33 MLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT----ELWLGVDALGLNIY 79
          M +EDAM +Y+ I ++   YG   FE++  K      ELWLGV A G+++Y
Sbjct: 1  MSQEDAMAKYMAIIREWPGYGSTLFEVECNKEGGFPQELWLGVSAKGVSLY 51

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The MyoX FERM domain binds to the NPXY motif of several beta-integrins, a key family of cell surface receptors that are involved in cell adhesion and migration. In addition the FERM domain binds to the cytoplasmic domains of the netrin receptors DCC (deleted in colorectal cancer) and neogenin. The FERM domain also forms a supramodule with its MyTH4 domain which binds to the negatively charged E-hook region in the tails of alpha- and beta-tubulin forming a proposed motorized link between actin filaments and microtubules. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 111

>gnl|CDD|214604 smart00295, B41, Band 4

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 19/92 (20%)

Query: 44  KIAQDLEMYGVNYF---EIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQ 100
            + + L +    YF        +    WL             D    ++ QDVK E PL 
Sbjct: 28  TVCRKLGIRESEYFGLQFEDPDEDLRHWL-------------DPAKTLLDQDVKSE-PLT 73

Query: 101 FKFRAKFYPEDVVEEIIQDIT-LRLFYLQVSR 131
             FR KFYP D   ++ +D T L L YLQV  
Sbjct: 74  LYFRVKFYPPD-PNQLKEDPTRLNLLYLQVRN 104

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs. Length = 201

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 26/104 (25%), Positives = 55/104 (52%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
            +++++ Q  E +   ++ + +L       E+ + + +E  E L++LE E+ +  + L E
Sbjct: 703 LLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEE 762

Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNK 317
            +E +  LEE L +L+   EELE ++  LQ EL+ +  +    +
Sbjct: 763 LEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAE 806

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 26/107 (24%), Positives = 63/107 (58%), Gaps = 4/107 (3%)

Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAR----EKAEKKHQESVERLKQLEVEMAKRDQD 270
           +++++ QA + +  ++ + +  +LE+A      ++  K+ +E  E L +LE E+ +  ++
Sbjct: 202 LEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEE 261

Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNK 317
           L EA++ I  L+ +L++L+   EEL+    EL+ E++ +  + +L +
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 221 QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLK----QLEVEMAKRDQDLMEAQE 276
           + REE    Q++  + + E+       ++ +E +E L+    +LE E+ +  ++L     
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295

Query: 277 MIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
            I RLE+Q + L+     LE +  EL+ +L+ + ++ +
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
           VQQ      ++ +AK+ ++ + + E    E+ + K     ERLKQLE E  K  +   +A
Sbjct: 61  VQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQA 120

Query: 275 QEMIRRLEEQLKQL--QAAKEELEARQTE 301
           +E  ++ + + KQ   QA K   E ++  
Sbjct: 121 EEAEKQAQLEQKQQEEQARKAAAEQKKKA 149

Length = 387

>gnl|CDD|241341 cd13187, FERM_C_PTPH13, Protein tyrosine phosphatase non-receptor 13 (PTPH13) FERM domain C-lobe

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 148 TPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRR 207
           TP + FPW E + ISF+ +KFII+          F+    + ++ +L LC   H+ +M+ 
Sbjct: 59  TPVLRFPWRETKKISFDRKKFIIENRGGSGIKHTFYTDSYKKSQYLLRLCSSQHKFHMKM 118

Query: 208 R 208
           R
Sbjct: 119 R 119

There are many functions of PTPN13 (also called PTPL1, PTP-BAS, hPTP1E, FAP1, or PTPL1). Mice lacking PTPN13 activity have abnormal regulation of signal transducer and activator of transcription signaling in their T cells, mild impairment of motor nerve repair, and a significant reduction in the growth of retinal glia cultures. It also plays a role in adipocyte differentiation. PTPN13 contains a kinase non-catalytic C-lobe domain (KIND), a FERM domain with two potential phosphatidylinositol 4,5-biphosphate [PtdIns(4,5)P2]-binding motifs, 5 PDZ domains, and a carboxy-terminal catalytic domain. There is an nteraction between the FERM domain of PTPL1 and PtdIns(4,5)P2 which is thought to regulate the membrane localization of PTPN13. PDZ are protein/protein interaction domains so there is the potential for numerous partners that can actively participate in the regulation of its phosphatase activity or can permit direct or indirect recruitment of tyrosine phosphorylated PTPL1 substrates. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 124

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 22/103 (21%), Positives = 56/103 (54%), Gaps = 4/103 (3%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIA----AREKAEKKHQESVERLKQLEVEMAKRDQ 269
            ++Q K   RE     ++Q ++L+ ++       ++  ++  E  E+L++L+ E+   + 
Sbjct: 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358

Query: 270 DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
           +L E +  +  LE +L++L+   E L ++  +L+L++  + N+
Sbjct: 359 ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREK----AEKKHQESVERLKQLEVEMAKRDQ 269
           + ++       E  + +Q+R++L+ EI   E+     E+K  E  E L++LE E+ +  +
Sbjct: 804 EAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Query: 270 DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
           +L E +     LE++LK+L+  KEELE    EL+ EL  ++ +
Sbjct: 864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEE 906

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 217 QMKAQAREEKNAKQQQRDKLQLEIAARE----KAEKKHQESVERLKQLEVEMAKRDQDLM 272
               + REE    Q++  +L+ EI   E       ++ +E    L++LE  + +  + + 
Sbjct: 274 SELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIE 333

Query: 273 EAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306
             +E +   E  L++L+    ELE  + EL+ +L
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKL 367

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 3/100 (3%)

Query: 213 IDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLM 272
            +++   A+ R E    +++ + L+      E+  ++ ++  E LK+LE E+ +   +L 
Sbjct: 386 AELEAELAEIRNELEELKREIESLEER---LERLSERLEDLKEELKELEAELEELQTELE 442

Query: 273 EAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
           E  E +  LEEQL++L+   +ELE    ELQ ELQ +  +
Sbjct: 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKE 482

Length = 1163

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 6/96 (6%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEI---AAREKAEKKHQESVERLKQLEVEMAKRDQD 270
            + +  ++ARE + A +QQ ++LQ  I   AAR  A    Q+++ RL++   E  +  QD
Sbjct: 569 SLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQD 628

Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306
           + E    +++L E+ ++L   ++EL AR+  L  E+
Sbjct: 629 VTEY---MQQLLERERELTVERDELAARKQALDEEI 661

Length = 1486

>gnl|CDD|241346 cd13192, FERM_C_FRMD3_FRMD5, FERM domain-containing protein 3 and 5 FERM (FRMD3 and 5) domain C-lobe

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 38 AMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIY 79
          A + +L+ A  LE YGV+   +K+  GT+L+LG    G+ ++
Sbjct: 1  AELNFLRKAHTLETYGVDPHPVKDHYGTQLYLGFTHTGVVVF 42

FRMD3 (also called Band 4.1-like protein 4O/4.1O though it is not a true member of that family) is a novel putative tumor suppressor gene that is implicated in the origin and progression of lung cancer. In humans there are 5 isoforms that are produced by alternative splicing. Less is known about FRMD5, though there are 2 isoforms of the human protein are produced by alternative splicing. Both FRMD3 and FRMD5 contain a N-terminal FERM domain, followed by a FERM adjacent (FA) domain, and 4.1 protein C-terminal domain (CTD). The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 105

>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 13/120 (10%)

Query: 207 RRKPD-TID-VQQMKAQAREEKNAKQQQRDKL-----QLEIAAREKAEK-KHQESVERLK 258
           R  PD  ID + +  A+ R E ++K ++ D+L     QLEI  RE  +K K + S ERL+
Sbjct: 379 RFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIE-REALKKEKDEASKERLE 437

Query: 259 QLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
            LE E+A+ +++  + +E  +  +  ++ +Q  KEE+E    +++LEL+    + +L K 
Sbjct: 438 DLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIE----QVRLELEQAEREGDLAKA 493

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins [Protein fate, Protein folding and stabilization]. Length = 852

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
           ++++   Q R+E     +Q   L+ ++A   + E + ++  ER+ QL  E+ + + ++ E
Sbjct: 709 ELEEELEQLRKELEELSRQISALRKDLA---RLEAEVEQLEERIAQLSKELTELEAEIEE 765

Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310
            +E +   EE+L + +A  EELEA+  +L+ EL+ +R
Sbjct: 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 219 KAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMI 278
             +  EE +  +++ ++LQ      E+AEK+ +E    L++L  E+ +  ++L+E +E I
Sbjct: 241 LEELEEELSRLEEELEELQ---EELEEAEKEIEELKSELEELREELEELQEELLELKEEI 297

Query: 279 RRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
             LE ++  L+   EELE    EL+  L+ ++ +
Sbjct: 298 EELEGEISLLRERLEELENELEELEERLEELKEK 331

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 23/101 (22%), Positives = 58/101 (57%), Gaps = 3/101 (2%)

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           + K +  ++++ +   +EE    +++ ++ +  + A E+  +  ++  ERL+Q   E+ +
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ---EIEE 832

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
            ++++ E +E +  LEE+L++L+   EEL+    EL+ E +
Sbjct: 833 LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKE 873

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 10/105 (9%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
            +   K    +E    Q+QR  L+ +I + EK           ++ L  +  + +++L E
Sbjct: 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK----------EIENLNGKKEELEEELEE 872

Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
            +  +R LE +L  L+  ++ELEA+  EL+ +++ +  Q    + 
Sbjct: 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEI-----------AAREKAEKKHQESVERLKQLEV 262
           D ++   + + E N  +++ D+LQ E+           AA    E K  E  E  +   +
Sbjct: 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448

Query: 263 EMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306
           E+ K++  L +    + + E++L  L+   + +E   ++LQ EL
Sbjct: 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 204 YMRRRKPDTIDVQQMKAQ---AREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQL 260
              R K     +++ KA+     +   A + + + L+ +++  E   ++ +E ++R ++ 
Sbjct: 22  LEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81

Query: 261 ------EVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
                 E E+   + ++  A+E I  LE++L +L    E+LE    +L+  L+ +     
Sbjct: 82  LSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141

Length = 239

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 24/100 (24%), Positives = 51/100 (51%)

Query: 219 KAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMI 278
              A EE   K ++ +        R + E++ +E +E L+QLE E+ +  ++L E  + +
Sbjct: 652 LQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKL 711

Query: 279 RRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
             +E+ +++L++ K ELE  + EL+   + +     L + 
Sbjct: 712 GEIEQLIEELESRKAELEELKKELEKLEKALELLEELREK 751

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 20/97 (20%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 220 AQAREEKNAKQQQRDKLQLEIAA----REKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
           A+   E    +++  +L  E+       E+ E++ +E+ E L + E E+ + +  + + +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 276 EMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
           E ++ L E L +L+A    L      L+  L+ +  +
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERR 832

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 19/114 (16%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 205 MRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREK----AEKKHQESVERLKQL 260
           +   + +  + ++   +   E    +++ ++L+LE++  E+     +K+       + +L
Sbjct: 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300

Query: 261 EVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
           E +     + L   +  +  LE QL++L++  +EL     EL+ +L+ ++ +  
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 24/106 (22%), Positives = 53/106 (50%), Gaps = 11/106 (10%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAR----EKAEKKHQESVERLKQLEVEM--AKR 267
           +++    +  EE    +++ ++L+ E+ +     E+ E + +E   RL++LE ++   + 
Sbjct: 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386

Query: 268 DQDLMEAQEM-----IRRLEEQLKQLQAAKEELEARQTELQLELQP 308
               +E Q       I RLE +L++L+  +E L+    EL  +L+ 
Sbjct: 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
           D++      R E    Q ++   + E   RE A  + Q++ +  + +  E+A   Q+L +
Sbjct: 78  DIRPQLRALRTELGTAQGEKRAAETE---REAARSELQKARQEREAVRQELAAARQNLAK 134

Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQS 313
           AQ+ + RL +Q + LQ   + L  ++ +L+ + Q ++   
Sbjct: 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQ 174

Length = 499

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 23/98 (23%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVE----RLKQLEVEMAKRDQ 269
            ++       +     ++Q ++L+ ++   ++     +E +E    RL++LE E+ + ++
Sbjct: 692 SLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751

Query: 270 DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
           +L E QE +  LEE+L+ L+ A  +L+    EL+ + Q
Sbjct: 752 ELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQ 789

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 222 AREEKNAKQQQRDKLQLEIAAR-EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRR 280
              E   + ++  K    +A    + E++ Q   ERL  LE ++ + +  L E +  +  
Sbjct: 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334

Query: 281 LEEQLKQLQAAKEELEARQTELQLELQ 307
           L E+L +L+   EEL+     L+ EL+
Sbjct: 335 LAEELAELEEKLEELKEELESLEAELE 361

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 7/100 (7%)

Query: 215 VQQMKAQAR--EEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLM 272
           ++ ++ QA   E     + +  +L+L +      E +     E L++L+ E+ + +++L 
Sbjct: 202 LKSLERQAEKAERYKELKAELRELELALLVLRLEELR-----EELEELQEELKEAEEELE 256

Query: 273 EAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
           E    ++ LEE+L++L+    ELE    ELQ EL  + N+
Sbjct: 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 18/89 (20%), Positives = 42/89 (47%)

Query: 219 KAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMI 278
           +A+           R++L+         E++ ++  E++++L  ++     ++ E +E+I
Sbjct: 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868

Query: 279 RRLEEQLKQLQAAKEELEARQTELQLELQ 307
             LE +L+ L   +  LE     L+ EL+
Sbjct: 869 EELESELEALLNERASLEEALALLRSELE 897

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 200 NHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLK- 258
             E  +   +    ++++  A+ R+E    +++ ++L+ E+    +     ++ + RL+ 
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 259 ---QLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
              QLE  +A+  ++L E +  I  LEE+L++ +    E EA   EL+ +++ ++ +   
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800

Query: 316 NK 317
            +
Sbjct: 801 LR 802

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 11/110 (10%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIA-----------AREKAEKKHQESVERLKQLEV 262
           ++Q+   +  EE  + ++   KL+ EI              E+ E++ +E+  RL  LE 
Sbjct: 755 ELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALER 814

Query: 263 EMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
           E+   +Q     ++ I  LEE++++L+   +ELE    EL+ EL+ ++ +
Sbjct: 815 ELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEE 864

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
           +++   +  RE     + + ++L+  +   ++  +  +E +E  + L  E+ +   +L E
Sbjct: 299 ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358

Query: 274 AQEMIRRLEEQLKQLQAAKEE----LEARQTELQLELQPIRNQSNLNK 317
           A+E    LEE+L  L    EE    L     EL+ EL  IRN+    K
Sbjct: 359 AKE---ELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK 403

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 19/99 (19%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREK----AEKKHQESVERLKQLEVEMAKRDQ 269
            +Q    +     +   Q+      +I   EK     E++ ++  ERL++LE +++  +Q
Sbjct: 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751

Query: 270 DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308
           ++   +  ++ LE ++++L+    +LE    +L+  L  
Sbjct: 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 202 ELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLE 261
           +L +R  +     ++Q         NA Q + ++L    AA ++  +  Q+   ++ Q  
Sbjct: 190 DLKLRSAQ-----IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKA 244

Query: 262 VEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA-RQTELQLELQPIRNQ 312
            ++A R + + E +  ++RLE    +L+    +LEA  Q  ++L  Q    Q
Sbjct: 245 QQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQ 296

Length = 499

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 176 KAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDK 235
           + PD +  A    V + I     G   L+  R+      ++        +    + +   
Sbjct: 111 EFPDDLLSAEDPAVPELIK----GQQSLFESRK----STLRAQLELILAQIKQLEAELAG 162

Query: 236 LQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL 295
           LQ ++ A  +  +   E +E  ++L+ +      +L+E +      + +L +L+A  E L
Sbjct: 163 LQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVL 222

Query: 296 EARQTELQLELQPIRNQ 312
           + +  ELQLE Q I   
Sbjct: 223 KRQIDELQLERQQIEQT 239

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 22/111 (19%), Positives = 52/111 (46%), Gaps = 13/111 (11%)

Query: 206 RRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIA-AREKAEKKHQESVERLKQLEVE- 263
           R  +    + + +  +A + K   +++++KLQ E     E+AEK+ Q++++  K+ E + 
Sbjct: 530 RELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK-EADE 588

Query: 264 ----------MAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304
                              E  E  +RL +  ++ +  K++ + +Q EL++
Sbjct: 589 IIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639

Length = 782

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 203 LYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQ--ESVERLKQL 260
           + +++R+    + +++  +A++E   K +       E+  RE+ +++ +     E L++ 
Sbjct: 23  VLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQRE 82

Query: 261 EVEMAKRDQDLMEAQEMIRRLEEQL----KQLQAAKEELEARQTELQLELQPIRNQS 313
           E  + ++++ L    E +  LE QL    K L A + ELE  + +L  EL  +   +
Sbjct: 83  EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLT 139

Length = 508

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAARE----KAEKKHQESVERLKQLEVEMAKRDQDL 271
           ++   +A+EE     + R++ + E+  R     K EK+  +  E L +    + KR+++L
Sbjct: 56  KEALLEAKEEI---HKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEEL 112

Query: 272 MEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNK 317
            + ++ + + +++L++    +EELE    E   EL+ I   S L  
Sbjct: 113 EKKEKELEQKQQELEKK---EEELEELIEEQLQELERI---SGLTA 152

Length = 520

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 206 RRRKPD-TIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEM 264
           R+   + +  +  ++      +   +Q  +++        + E + +E  ERL++ E E+
Sbjct: 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777

Query: 265 AKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
           A+ + ++ E +  I +L+E+LK L+ A +EL A  T L  E  
Sbjct: 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 18/92 (19%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 221 QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRR 280
           + RE++    +Q  +L++ ++  E+  ++ Q +   L +    + K   D  E +++   
Sbjct: 504 RLREQR-HLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEE 562

Query: 281 LEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
           LE +L+ L  +  E   R+  L+ +L+ ++ +
Sbjct: 563 LEARLESLSESVSEARERRMALRQQLEQLQAR 594

Length = 1486

>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342)

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 235 KLQLEIAAREKAEKKHQESVERLKQL--EVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAK 292
           +L+ E+   E+  K+ +E +E++K+L  ++    R Q   E +E + +L E  ++L    
Sbjct: 331 ELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEEL 390

Query: 293 EELEARQTELQLELQPIRNQS 313
           EELE    EL+ EL+ + ++ 
Sbjct: 391 EELEEELKELKEELESLYSEG 411

This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length. Length = 450

>gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 231 QQRDKLQLEIAAREKAEKKHQESVER--LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQL 288
           ++  +L+ E+ A +K +      +    L QLE  +A+    L E QE +++   QL +L
Sbjct: 52  KELRELRQELEALKKTDAPVFPELANLSLSQLEQRLAQTLSQLQELQEQLQQENSQLIEL 111

Query: 289 QAAKEELEARQTELQLELQPIRNQSN 314
           Q   E  + + +E +  LQ IRN+  
Sbjct: 112 QTRPERAQQQLSEARRRLQEIRNRLQ 137

The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux. Length = 239

>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 202 ELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEI---AAREKAEKKHQESVERLK 258
           E   +  +     +    + ARE++ A +Q++++LQ  I     R       Q ++E+L 
Sbjct: 556 EALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLS 615

Query: 259 QLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
           +   E     QD+    E +++L E+ ++    ++EL AR+  L  E++
Sbjct: 616 EQSGEEFTDSQDVT---EYMQQLLEREREATVERDELGARKNALDEEIE 661

Length = 1480

>gnl|CDD|241342 cd13188, FERM_C_PTPN14_PTPN21, Protein tyrosine phosphatase non-receptor proteins 14 and 21 (PTPN14 and 21) FERM domain

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 32 GMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDN 84
          G+   +A + Y++  + L+ YG   +  K+ +G ++++G    G  I+ K  N
Sbjct: 1  GLSPAEAELLYIQEVEQLDGYGEESYPAKDNQGNDIFIGASFEG--IFVKHKN 51

This CD contains PTP members: pez/PTPN14 and PTPN21. A number of mutations in Pez have been shown to be associated with breast and colorectal cancer. The PTPN protein family belong to larger family of PTPs. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. The members are composed of a N-terminal FERM domain and a C-terminal PTP catalytic domain. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. Like most other ERM members they have a phosphoinositide-binding site in their FERM domain. The FERM C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 111

>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 21/78 (26%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 230 QQQRDKLQLEIAAREKA--EKKHQES--VERLKQLEVEMAKRDQDLMEAQEMIRRLEEQL 285
           + Q   +Q +IAA+EK+  +++ Q +  + +LK+ E  +++  + L E Q  + +L +Q+
Sbjct: 46  RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI 105

Query: 286 KQLQAAKEELEARQTELQ 303
            +L A+  +LE +Q   +
Sbjct: 106 DELNASIAKLEQQQAAQE 123

Length = 428

>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 28/119 (23%)

Query: 209 KPDTID-----VQQMK----AQAREEKNAKQQQRDKLQLEIAARE----------KAEK- 248
           KP+ +D     + Q++    A  +E+  A +++ + L+ E+A  E          KAEK 
Sbjct: 403 KPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKA 462

Query: 249 ------KHQESVERLKQLEVEMAKRDQDLMEAQE-MIRRLEEQLKQLQAAKEELEARQT 300
                 + +E +E+++ LE+E A+R+ DL +A E    +L E  K+LQAA+ +L     
Sbjct: 463 AIQGIQQIKEEIEQVR-LELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETK 520

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins [Protein fate, Protein folding and stabilization]. Length = 852

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           R+K +T  ++Q  AQA  +    Q + + L+         E +   S   L+QLE  +A+
Sbjct: 77  RQKEETEQLKQQLAQAPAKLRQAQAELEALK----DDNDEETRETLSTLSLRQLESRLAQ 132

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
               L  AQ  +     QL  LQ   E  +A        LQ IRN     KV
Sbjct: 133 TLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKV 184

Length = 1113

>gnl|CDD|204032 pfam08703, PLC-beta_C, PLC-beta C terminal

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 211 DTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQD 270
           +  ++++   + R E+  + + ++K   E    E      QE V+ +K+LE    +R + 
Sbjct: 64  EKKELKKKLDRKRLERIQEAKTKEKHAQEREKTEINRSHIQEVVQSIKRLEEAQKRRQEK 123

Query: 271 LMEAQ-EMIRRLEEQLKQLQA-AKEELEARQTELQLELQ 307
           L E Q E++++++E+  +LQA A  E EA+   L  E+Q
Sbjct: 124 LEEKQAEILQQIQEEEPKLQAEATAEYEAKLKRLPQEVQ 162

This domain corresponds to the alpha helical C terminal domain of phospholipase C beta. Length = 181

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 221 QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRR 280
           +        + +R++LQ EI    K  ++ +     LK+L+ E+ + +++L E QE + R
Sbjct: 404 RLEARLERLEDRRERLQQEIEELLKKLEEAE-----LKELQAELEELEEELEELQEELER 458

Query: 281 LEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
           LEE L++L+   EE E      + EL  ++ +
Sbjct: 459 LEEALEELREELEEAEQALDAAERELAQLQAR 490

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 25/99 (25%), Positives = 61/99 (61%), Gaps = 3/99 (3%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
           ++++   +A    +A +++ + L+     RE+ E++ +E  E +++LE ++ + +++L E
Sbjct: 797 ELEEELEEAERRLDALERELESLE---QRRERLEQEIEELEEEIEELEEKLDELEEELEE 853

Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
            ++ +  L+E+L++L+A KEELE    EL+ E + +  +
Sbjct: 854 LEKELEELKEELEELEAEKEELEDELKELEEEKEELEEE 892

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 16/109 (14%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAARE----------------KAEKKHQESVERL 257
           +V+    +        ++   KL+  +   E                K E++      RL
Sbjct: 755 NVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARL 814

Query: 258 KQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306
           +++E ++ +   +    ++ I+ L+EQ   L+   + +E     L  + 
Sbjct: 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           +R  +    ++++ +A  EK AKQ ++   Q E   ++  E K +++ E   + E E  K
Sbjct: 83  QRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEK 142

Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEAR 298
           + ++  + Q       +     +A K+  EA+
Sbjct: 143 KAKEEAKKQAEEEAKAKA--AAEAKKKAAEAK 172

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQ----ESVERLKQLEVEMAKRDQD 270
            Q +  Q + E+  ++Q+    +LE  AR    K ++    E++  +  LE +    +  
Sbjct: 47  AQVIARQKQLERKLEEQKEQAKKLENKARAALTKGNEELAREALAEIATLEKQAEALETQ 106

Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
           L + +  + +L +QL  L+   ++L+A++T L+  L+  + Q  +N  
Sbjct: 107 LTQQRSAVEQLRKQLAALETKIQQLKAKKTALKARLKAAKAQEAVNTS 154

This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator. Length = 220

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 16/101 (15%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLE-IAAREKAEKKHQESVERL-KQLEVEMAKRDQDL 271
           ++++M   A  E+ A +   DK + E I A+ +AE    E V  L K L+ E  K  +  
Sbjct: 505 EIERMVKDA--EEYAAE---DKKRKERIEAKNEAE----EYVYSLEKSLKEEGDKLPE-- 553

Query: 272 MEAQEMIRRLEEQLKQLQAA--KEELEARQTELQLELQPIR 310
              ++ +    E LK+      KEE+EA+  ELQ  +QPI 
Sbjct: 554 -ADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIG 593

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
KOG3529|consensus	596		100.0
KOG3530|consensus	616		99.98
KOG3527|consensus	975		99.92
KOG0792|consensus	1144		99.9
cd00836	92	FERM_C FERM_C domain. The FERM_C domain is the thi	99.9
PF09380	90	FERM_C: FERM C-terminal PH-like domain; InterPro:	99.85
KOG3531|consensus	1036		99.72
KOG3529|consensus	596		99.53
KOG3530|consensus	616		99.04
KOG3527|consensus	975		98.73
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	98.68
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	98.49
KOG4371|consensus	1332		98.48
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	98.38
PF00373	126	FERM_M: FERM central domain; InterPro: IPR019748 T	98.26
KOG3531|consensus	1036		98.11
KOG0792|consensus	1144		98.07
PF00373	126	FERM_M: FERM central domain; InterPro: IPR019748 T	96.52
KOG0248|consensus	936		95.16
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.1
KOG4261|consensus	1003		94.92
KOG3727|consensus	664		94.29
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	91.47
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	90.67
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	89.78
KOG1029|consensus	1118		89.53
PRK11637	428	AmiB activator; Provisional	88.48
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	88.31
PRK11637	428	AmiB activator; Provisional	88.22
PTZ00266	1021	NIMA-related protein kinase; Provisional	87.94
PRK12704	520	phosphodiesterase; Provisional	87.51
PTZ00266	1021	NIMA-related protein kinase; Provisional	87.48
PRK12704	520	phosphodiesterase; Provisional	86.88
PRK10884	206	SH3 domain-containing protein; Provisional	85.75
KOG1029|consensus	1118		84.96
PRK09510	387	tolA cell envelope integrity inner membrane protei	84.72
PRK00106	535	hypothetical protein; Provisional	83.38
KOG0742|consensus	630		83.36
COG4372	499	Uncharacterized protein conserved in bacteria with	82.75
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	82.4
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	82.05
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	80.04

>KOG3529|consensus

Probab=100.00  E-value=3.2e-47  Score=389.57  Aligned_cols=254  Identities=63%  Similarity=0.993  Sum_probs=243.7

Q ss_pred             CCCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeee
Q psy3983           1 MSVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYE   80 (318)
Q Consensus         1 ~~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~   80 (318)
                      ++++|.+|+++|+||..+|+.+|..||..|+|+++++|+++||+++++|++||++||.++|++|++.|||++..|++||.
T Consensus       159 ~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~~k~gt~~~lgv~~~gl~~y~  238 (596)
T KOG3529|consen  159 DRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGTDLWLGVDALGLNIYD  238 (596)
T ss_pred             CcccchhhhhhccccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccccccccceeecCCCCCCccccccccCCccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCccccc
Q psy3983          81 KEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRN  160 (318)
Q Consensus        81 ~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~  160 (318)
                      ..|+                                                              +.|+.+|+|++|+|
T Consensus       239 ~~~k--------------------------------------------------------------~~P~~~f~w~eirn  256 (596)
T KOG3529|consen  239 ESDK--------------------------------------------------------------LTPKIGFPWSEIRN  256 (596)
T ss_pred             cccC--------------------------------------------------------------CCCCCCCCccccCC
Confidence            9988                                                              88999999999999


Q ss_pred             cccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Q psy3983         161 ISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEI  240 (318)
Q Consensus       161 lsf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d~~~vqqmkaqa~eek~~~~~er~~l~~e~  240 (318)
                      |||++++|.|+|+|+++++|+|+.++.+.++.|+++|.+||++||+||+|||++||||++||+++|++++++|.++..++
T Consensus       257 isf~~kkf~~k~id~~~~~f~~~~~~~~~~~~~l~~~~~~~~l~~rr~~~~ti~vqq~~~~a~~~k~~~~~e~~~~~~~~  336 (596)
T KOG3529|consen  257 ISFNDKKFHIKPIDKKASDFSFYAPRLRINKRILDLCMGNHELYMRRRKPDTIEVQQMKAQAREEKARKQLERAKLEREK  336 (596)
T ss_pred             CCCCcccccCCCCCcccCcccccccccccchhhhhhhhccchhhhhcccccccchhhccccccchHHHHHHhhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy3983         241 AAREKAEKKHQ-------ESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQS  313 (318)
Q Consensus       241 ~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (318)
                      ..|+.++++..       ++..++.+.++.+.+..+++.++.+++..++++.+.++.++..|++....+++..+.+..+.
T Consensus       337 ~~re~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~E~~~~~l~~~a~~le~e~~rL~e~~~~le~e~  416 (596)
T KOG3529|consen  337 KKRETGEKEGSELERLKEELQGRMAQAQEDVERARRELAEASRKARDLEEERKLLKKEASELEAERPRLEELKQKLEEEK  416 (596)
T ss_pred             hhhhhcccccCcccccchhhhhhhhhhhHHHHHhhhcchhhcccccCccchhhhhhhhHhhhhhhhhHHHHHHHHHHHHh
Confidence            99999998854       78889999999999999999999999999999999999999999999999998888877665


Q ss_pred             ccc
Q psy3983         314 NLN  316 (318)
Q Consensus       314 ~~~  316 (318)
                      .+.
T Consensus       417 ~d~  419 (596)
T KOG3529|consen  417 HDS  419 (596)
T ss_pred             hcc
Confidence            543

>KOG3530|consensus

Probab=99.98  E-value=4.9e-33  Score=281.33  Aligned_cols=164  Identities=24%  Similarity=0.415  Sum_probs=141.9

Q ss_pred             HHHHccCCCHHHHHHHHHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEE
Q psy3983          26 WWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKF  103 (318)
Q Consensus        26 ~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f  103 (318)
                      +.+.++|+...|-      ||..|++.+.|||||  .|..++..||+++++              |+.+++-++|+.|+|
T Consensus        27 ~pk~akGq~Lld~------V~~~ldl~E~DYFGLry~D~~~~~hWLD~tK~--------------I~kqvK~gppytL~~   86 (616)
T KOG3530|consen   27 FPKTAKGQELLDY------VFYHLDLIEKDYFGLRYQDSSKVRHWLDPTKS--------------IKKQVKIGPPYTLHL   86 (616)
T ss_pred             cCcccchHHHHHH------HHHhhceeeeeccceeeechhhcceecCcchh--------------HHHHhccCCCeEEEE
Confidence            5667888888544      466667888899999  899999999999984              334578899999999


Q ss_pred             EEeecCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCcccccc----------------------------------
Q psy3983         104 RAKFYPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLT----------------------------------  148 (318)
Q Consensus       104 ~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~----------------------------------  148 (318)
                      ||||||+||+. |.+|+|||+||||||+||++ ||+||.+.|+.|+                                  
T Consensus        87 rVKfY~sdP~~-Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~p~Qte~L  165 (616)
T KOG3530|consen   87 RVKFYPSDPNN-LREENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFLPNQTEEL  165 (616)
T ss_pred             EEEeccCChhh-hhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEecccccHHH
Confidence            99999999995 99999999999999999999 9999999999988                                  


Q ss_pred             --------------------------------------cc--------------------------cCccCccccccccc
Q psy3983         149 --------------------------------------PK--------------------------IGFPWSEIRNISFN  164 (318)
Q Consensus       149 --------------------------------------p~--------------------------~~f~W~~I~~lsf~  164 (318)
                                                            |+                          ..|.|++|.+|.|+
T Consensus       166 E~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGIlvf~g~~kig~f~WpkI~KvdFk  245 (616)
T KOG3530|consen  166 EERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGILVFEGKKKIGLFFWPKITKVDFK  245 (616)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceEEEEECCceeeEEecchheEeecc
Confidence                                                  00                          02679999999999


Q ss_pred             cceEEEEeCCCC------CCceEEEcCCccchHHHHHHhhhcccccccccCC
Q psy3983         165 DRKFIIKPIDKK------APDFVFFAPRVRVNKRILALCMGNHELYMRRRKP  210 (318)
Q Consensus       165 ~kkF~Ikp~dkk------~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~  210 (318)
                      +++|++.+.++.      .++|+|.++++.+||+||+|||++|.||+.+..+
T Consensus       246 ~kk~~L~v~edd~~~~~q~hTf~F~~~~~~AcKhLWKCavEhhaFFRl~~p~  297 (616)
T KOG3530|consen  246 GKKFTLVVSEDDDQGREQEHTFVFRLPSPKACKHLWKCAVEHHAFFRLRCPV  297 (616)
T ss_pred             CcEEEEEEeeccccCCcccceEEEeCCCcchhHHHHHHhhhccceEeccCCc
Confidence            999999985432      2699999999999999999999999999887653

>KOG3527|consensus

Probab=99.92  E-value=7e-26  Score=236.56  Aligned_cols=195  Identities=24%  Similarity=0.401  Sum_probs=161.8

Q ss_pred             HHccCCCHHHHHHHHHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEE
Q psy3983          28 KEHKGMLREDAMMEYLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRA  105 (318)
Q Consensus        28 k~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~v  105 (318)
                      +..+|..+.      -++|..|++++.|||||  .++.....||++.+.             +-+|  -+..||+|-|.|
T Consensus        50 k~~kg~~~~------~~vc~~LnliEkdyfgl~~~~~~~~~~wlD~~k~-------------i~k~--vr~~~w~f~f~v  108 (975)
T KOG3527|consen   50 KHAKGQVLF------DKVCEHLNLLEKDYFGLTYLTSSEQKNWLDPAKE-------------IKKQ--VRSFPWNFTFNV  108 (975)
T ss_pred             cccccchhH------HHHhhccchhhhhhceeEEecCCCCccccccchh-------------hhcc--cccCccceeEee
Confidence            345777764      56777778999999999  788899999999984             1111  135689999999


Q ss_pred             eecCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCcccccc------------------------------------
Q psy3983         106 KFYPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLT------------------------------------  148 (318)
Q Consensus       106 kfyp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~------------------------------------  148 (318)
                      |||||||+ +|.++||||++|||+|.||++ ||+|++...++|.                                    
T Consensus       109 KfyPp~Ps-ql~EditrY~lcLq~R~Dil~GrlPcsfvt~allgsy~vq~E~gdYd~ee~~~~y~~df~~aPnqt~eled  187 (975)
T KOG3527|consen  109 KFYPPDPS-QLTEDITRYYLCLQLRQDILSGRLPCSFVTHALLGSYTVQSELGDYDPEEHGSDYLSDFKFAPNQTKELED  187 (975)
T ss_pred             eeCCCChH-hccccchhheehhhhhhhhhcCccccchhhhhhhhhHhHHhHhccCCHHHcccchhhhhccCcchhhhHHH
Confidence            99999996 699999999999999999999 9999999998887                                    


Q ss_pred             --------------------------------------------------------------cccCccCccccccccccc
Q psy3983         149 --------------------------------------------------------------PKIGFPWSEIRNISFNDR  166 (318)
Q Consensus       149 --------------------------------------------------------------p~~~f~W~~I~~lsf~~k  166 (318)
                                                                                    -...|.|+.|-+|||.+.
T Consensus       188 kv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lgvca~glliy~d~lrinrfawPKilKisykR~  267 (975)
T KOG3527|consen  188 KVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLGVCASGLLIYRDRLRINRFAWPKILKISYKRS  267 (975)
T ss_pred             HHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccccccceeeecccccceEEeechhhhccccCchhhhhcccee
Confidence                                                                          011489999999999999


Q ss_pred             eEEEEeCCCC----CCceEEEcCCccchHHHHHHhhhcccccccccCCCcHHHHHH-----------HHHHHHHHHHHHH
Q psy3983         167 KFIIKPIDKK----APDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQM-----------KAQAREEKNAKQQ  231 (318)
Q Consensus       167 kF~Ikp~dkk----~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d~~~vqqm-----------kaqa~eek~~~~~  231 (318)
                      .|.|+...+.    ..+++|+.|+.++||+||+.||+||+||++ -.|+.+.--+.           +.||...+++--+
T Consensus       268 ~FyiKirPge~eq~EstigFklpnhraakrlwk~cvEHhtffrl-~~Pe~~pk~~f~~~gs~~rysgrtqa~trqAsali  346 (975)
T KOG3527|consen  268 NFYIKIRPGEFEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFRL-VSPEPPPKSKFLVLGSKFRYSGRTQAQTRQASALI  346 (975)
T ss_pred             eeEEEecCCccccccccccccccchhhHHhhhHhhhhccceeee-ccCCCCccccccccccceeecccchhhhhhhcccc
Confidence            9999986543    368999999999999999999999999975 45666655322           6799999999999


Q ss_pred             hhHhHHHHHHHHHH
Q psy3983         232 QRDKLQLEIAAREK  245 (318)
Q Consensus       232 er~~l~~e~~~~~~  245 (318)
                      +|...-.|+.....
T Consensus       347 DRpaP~FERSsSkr  360 (975)
T KOG3527|consen  347 DRPAPFFERSSSKR  360 (975)
T ss_pred             cCCccccccccccc
Confidence            99999888876544

>KOG0792|consensus

Probab=99.90  E-value=9e-25  Score=231.94  Aligned_cols=151  Identities=28%  Similarity=0.504  Sum_probs=130.5

Q ss_pred             HHhccCcccceeEEe---ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHH
Q psy3983          45 IAQDLEMYGVNYFEI---KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDIT  121 (318)
Q Consensus        45 vaq~Le~yGv~YFgL---~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~T  121 (318)
                      +|++|+.-+++|||+   .|+.+...||++.|+             +.+|.++..+|..+.|+|+||+++|.. |.+|+|
T Consensus        52 V~qrL~~~e~~yFgl~~~~~k~~~~rWvdleK~-------------lkkql~k~a~~p~l~frV~fyV~~p~~-LqeE~T  117 (1144)
T KOG0792|consen   52 VAQRLELREKEYFGLLWSPDKPDQIRWVDLEKP-------------LKKQLIKVANPPLLHFRVKFYVPDPSG-LQEEAT  117 (1144)
T ss_pred             HhhhhcccccccccccccCCccCccceeccchh-------------HHHhhhccCCCceEEEEEEEEecChhH-HHHHHH
Confidence            677778889999995   777888999999984             455656666788999999999999986 999999


Q ss_pred             HHHHHHHhhhhhhc-CCCCCCCcccccc--------------------------c-------------------------
Q psy3983         122 LRLFYLQVSRSAGS-RVRFPPGPNCLLT--------------------------P-------------------------  149 (318)
Q Consensus       122 Rylf~LQlK~di~~-rl~C~~~~a~lL~--------------------------p-------------------------  149 (318)
                      ||+||||||+||+. ||.|+.++|++|+                          |                         
T Consensus       118 RyqyylQvK~di~eGrl~Ct~~qailLA~yavQae~gdy~~~~s~~~l~~~~~~p~~~~~~~n~~~e~~~kVa~lhQ~h~  197 (1144)
T KOG0792|consen  118 RYQYYLQVKKDILEGRLPCTLNQAILLASYAVQAEFGDYNQKQSQDGLEYLSVFPQCTLQDENVLEEFEQKVAELHQQHR  197 (1144)
T ss_pred             HHHHHHHHHHHHhccccCCchHHHHHHHHhhhhhhhcchhhhcCCccchhccccccccccchhhHHHHHHHHHHHHHHhc
Confidence            99999999999999 9999999999998                          0                         


Q ss_pred             ------------------------------------------------------ccCccCccccccccccceEEEEeCCC
Q psy3983         150 ------------------------------------------------------KIGFPWSEIRNISFNDRKFIIKPIDK  175 (318)
Q Consensus       150 ------------------------------------------------------~~~f~W~~I~~lsf~~kkF~Ikp~dk  175 (318)
                                                                            ...|+|.+|.+++|+++.|.|....+
T Consensus       198 G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~lGi~~~Gi~V~~~~g~~~~~~~W~di~~is~~ks~~~le~~~~  277 (1144)
T KOG0792|consen  198 GLLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINLGIARVGILVPGQNGRQSVKFPWGDIIKISFKKSTFGLEQRNK  277 (1144)
T ss_pred             ccCccHHHHHHHHHHHhhccccceecccccCCCcceeeeeeeceeEeeccCccccceechhhhhhhhcchhhhhhhhhhc
Confidence                                                                  01379999999999999999988544


Q ss_pred             C----CCceEEEcCCccchHHHHHHhhhcccccccccC
Q psy3983         176 K----APDFVFFAPRVRVNKRILALCMGNHELYMRRRK  209 (318)
Q Consensus       176 k----~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~  209 (318)
                      .    .....|++.+.+.||+||++||.+|.||++.+.
T Consensus       278 ~~~~r~t~~~F~~~~~~~ak~lwk~cv~~H~Ffr~~~~  315 (1144)
T KOG0792|consen  278 DSESRETLLGFNMLDARTAKYLWKLCVEHHKFFRLKKP  315 (1144)
T ss_pred             cccchhhhheeeecccchhHHHHHHHHHHhhHhhcccc
Confidence            3    235689999999999999999999999987654

>cd00836 FERM_C FERM_C domain

Probab=99.90  E-value=3.6e-24  Score=170.43  Aligned_cols=90  Identities=42%  Similarity=0.756  Sum_probs=83.4

Q ss_pred             cccceeEEeecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhh
Q psy3983          51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVS  130 (318)
Q Consensus        51 ~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK  130 (318)
                      +||++||.++|++|+++|||+++.||.||+.++.                                              
T Consensus         1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~~----------------------------------------------   34 (92)
T cd00836           1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDDGTP----------------------------------------------   34 (92)
T ss_pred             CCCeeeEEEECCCCCeEEEEEeCCCcEEecCCCE----------------------------------------------
Confidence            6999999999999999999999999999986543                                              


Q ss_pred             hhhhcCCCCCCCcccccccccCccCccccccccccceEEEEeCCC--CCCceEEEcCCccchHHHHHHhhhcccccc
Q psy3983         131 RSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDK--KAPDFVFFAPRVRVNKRILALCMGNHELYM  205 (318)
Q Consensus       131 ~di~~rl~C~~~~a~lL~p~~~f~W~~I~~lsf~~kkF~Ikp~dk--k~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~  205 (318)
                                         ...|+|++|.+|+|++|+|+|++.+.  ...++.|++++++.||+||++|+++|.||+
T Consensus        35 -------------------~~~f~W~~I~~isf~~k~F~i~~~~~~~~~~~~~f~~~s~~~~k~lwk~~ve~H~Ffr   92 (92)
T cd00836          35 -------------------INEFPWPEIRKISFKRKKFTLKVRDKDGQEITLSFQTPSHRACKYLWKLCVEQHAFFR   92 (92)
T ss_pred             -------------------EEEEEcccceEEEEcCCEEEEEEecCcCceeeEEEECCCHHHHHHHHHHHHhhhhhcC
Confidence                               46899999999999999999999877  457899999999999999999999999996

The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.

>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4

Probab=99.85  E-value=6e-22  Score=156.42  Aligned_cols=89  Identities=36%  Similarity=0.781  Sum_probs=78.7

Q ss_pred             cCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCC
Q psy3983          61 NKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFP  140 (318)
Q Consensus        61 d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~  140 (318)
                      |++|.++|||++..||.||..+++                                                        
T Consensus         1 D~~~~~~~LGv~~~GI~i~~~~~~--------------------------------------------------------   24 (90)
T PF09380_consen    1 DKNGSPLWLGVSPRGISIYRDNNR--------------------------------------------------------   24 (90)
T ss_dssp             ETTSBEEEEEEESSEEEEEETTBS--------------------------------------------------------
T ss_pred             CCCCCEEEEEEcCCEeEEEeCCCc--------------------------------------------------------
Confidence            678999999999999999987776                                                        


Q ss_pred             CCcccccccccCccCccccccccccceEEEEeCC-CCCCceEEEcCCccchHHHHHHhhhcccccccccCCCc
Q psy3983         141 PGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPID-KKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDT  212 (318)
Q Consensus       141 ~~~a~lL~p~~~f~W~~I~~lsf~~kkF~Ikp~d-kk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d~  212 (318)
                            +. ...|+|++|.+|+|++++|+|.+.+ ....+++|++++++.||+||++||++|.||++++.++|
T Consensus        25 ------~~-~~~f~W~~I~~l~~~~k~F~I~~~~~~~~~~~~f~~~~~~~aK~lw~~cv~~H~Ff~~~~~~~~   90 (90)
T PF09380_consen   25 ------IS-TQFFPWSEISKLSFKKKKFTIEVRDESKEIKLKFYTPSPKAAKYLWKLCVEQHTFFRLRRPPKS   90 (90)
T ss_dssp             ------SS-SEEEEGGGEEEEEEETTEEEEEESSTSSSEEEEEE-SSHHHHHHHHHHHHHHHHHHHHHTS-EE
T ss_pred             ------cc-ceeeehhheeEEEecccEEEEEEeecccceEEEEEECCHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence                  32 3689999999999999999999987 55678999999999999999999999999999998765

1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....

>KOG3531|consensus

Probab=99.72  E-value=8.3e-19  Score=183.41  Aligned_cols=155  Identities=22%  Similarity=0.523  Sum_probs=130.6

Q ss_pred             HHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHh
Q psy3983          42 YLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQD  119 (318)
Q Consensus        42 fLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe  119 (318)
                      +-.||.+|++.+.||||+  .|.++..+||++.|+             |+. +|.....+.++|.|||||||+. .+.+|
T Consensus        66 l~~vc~~lnl~e~dyfglef~~~~~~~~wld~~kp-------------i~r-qi~~~~~~~~~~~vkf~~p~~~-~l~ee  130 (1036)
T KOG3531|consen   66 LDQVCRHLNLVECDYFGLEFQDINGNHCWLDLEKP-------------ILR-QIRRPKDVVLRFVVKFFPPDPI-QLQEE  130 (1036)
T ss_pred             HHHHHHhhceeeccccceeeccccCceEEecccch-------------HHH-HhcCccchhhheeecccCCCcc-ccchh
Confidence            345677778888999999  788889999999985             333 3556666889999999999998 49999


Q ss_pred             HHHHHHHHHhhhhhhc-CCCCCCCccccccc-------------------------------------------------
Q psy3983         120 ITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP-------------------------------------------------  149 (318)
Q Consensus       120 ~TRylf~LQlK~di~~-rl~C~~~~a~lL~p-------------------------------------------------  149 (318)
                      .|||+|.||+|+|+.- ++.|+..+|++|+.                                                 
T Consensus       131 ~trylf~~q~k~dl~~G~l~c~d~ta~lLss~~~qse~gdf~~~~d~~~l~~~~~~p~q~~~~~ki~~~h~~hig~tpae  210 (1036)
T KOG3531|consen  131 YTRYLFALQIKRDLALGRLTCNDTTAALLSSHIVQSEIGDFDEYLDREHLAHTRYLPNQDELEKKIMEFHQKHIGQTPAE  210 (1036)
T ss_pred             HHHHhhhhccccccccCCccCCCchhhhhhcccccccCCchhccccceeeeeeecCchHHHHHHHHHHhhhhhhccCchh
Confidence            9999999999999999 89999999999870                                                 


Q ss_pred             -----------------------------------------------ccCccCccccccccccceEEEEeCCCC----CC
Q psy3983         150 -----------------------------------------------KIGFPWSEIRNISFNDRKFIIKPIDKK----AP  178 (318)
Q Consensus       150 -----------------------------------------------~~~f~W~~I~~lsf~~kkF~Ikp~dkk----~~  178 (318)
                                                                     .+.|.|..|+++||+.++|.|+..+..    ..
T Consensus       211 sdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~Vfr~~tkinTf~wAkirklsfkrk~fLiklhp~~~g~~qd  290 (1036)
T KOG3531|consen  211 SDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGILVFRGLTKINTFNWAKIRKLSFKRKRFLIKLHPDSYGYYKD  290 (1036)
T ss_pred             hhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhHHHhcceeccCCCHHHHHHHHHHHHhhhheeccccccchhh
Confidence                                                           114789999999999999999987643    25


Q ss_pred             ceEEEcCCccchHHHHHHhhhcccccccccCCC
Q psy3983         179 DFVFFAPRVRVNKRILALCMGNHELYMRRRKPD  211 (318)
Q Consensus       179 ~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d  211 (318)
                      ++.|.+.+...||..|+-||++|.||++--.+.
T Consensus       291 t~ef~~~~rd~ck~fwk~cve~h~ffr~~~~~~  323 (1036)
T KOG3531|consen  291 TLEFLMASRDECKNFWKICVEHHAFFRLVEEPK  323 (1036)
T ss_pred             hHHHHHHhHHHHHHHHhccccccchhhhhcccC
Confidence            778888888899999999999999998765443

>KOG3529|consensus

Probab=99.53  E-value=3.9e-15  Score=153.90  Aligned_cols=110  Identities=40%  Similarity=0.662  Sum_probs=95.2

Q ss_pred             HHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHh
Q psy3983          42 YLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQD  119 (318)
Q Consensus        42 fLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe  119 (318)
                      |.-||+.+++-+++||||  .|.+|.+.||.+++             .|+.|++++.+|++|.|+|||||+++.++++++
T Consensus        39 ~dlv~~~~glre~~yfgl~~~d~~~~~~wl~~d~-------------~v~~~d~~k~~~~~~~f~akfy~E~v~eeli~~  105 (596)
T KOG3529|consen   39 FDLVVKTIGLRESWYFGLQYTDSKGEPTWLKLDK-------------KVLDQDVPKDSPLNFHFHAKFYPEDVAEELIQD  105 (596)
T ss_pred             HHHHhccCCCchhhhcccccccCCCCcchhhccc-------------hhhhhhcCCCCCcceeeeeecchHHHHHHHHHH
Confidence            455888899999999999  89999999999998             378889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhc-CCCCCCCccccccc-----ccCccCccccccccc
Q psy3983         120 ITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP-----KIGFPWSEIRNISFN  164 (318)
Q Consensus       120 ~TRylf~LQlK~di~~-rl~C~~~~a~lL~p-----~~~f~W~~I~~lsf~  164 (318)
                      +|.+|||||+|..|++ .++|++++.++|+.     .+|.+-.+...+++.
T Consensus       106 ~t~~Lffl~vk~~il~~~i~~~~E~~~~las~~vqa~~gdy~~~~~~~~~l  156 (596)
T KOG3529|consen  106 ITQHLFFLQVKEAILSDEIYCPPETSVLLASYAVQAKYGDYDKETHKVGRL  156 (596)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhccccchhhhhhcc
Confidence            9999999999999999 89999999999983     345533344444443

>KOG3530|consensus

Probab=99.04  E-value=3.3e-10  Score=116.36  Aligned_cols=69  Identities=33%  Similarity=0.566  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeecCCc
Q psy3983          16 PSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDN   84 (318)
Q Consensus        16 ~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk   84 (318)
                      .+.+|.+|.+.||+.+|++|+.||++||+.|+.|||||+|.|.|++.+|....||+++.||.||+...+
T Consensus       162 te~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGIlvf~g~~k  230 (616)
T KOG3530|consen  162 TEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGILVFEGKKK  230 (616)
T ss_pred             cHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceEEEEECCce
Confidence            468999999999999999999999999999999999999999999999999999999999999997655

>KOG3527|consensus

Probab=98.73  E-value=1.8e-08  Score=107.26  Aligned_cols=79  Identities=33%  Similarity=0.580  Sum_probs=72.5

Q ss_pred             CchhhHhhcCCChH---HHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeee
Q psy3983           4 SPLRVMDQHKMSPS---EWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYE   80 (318)
Q Consensus         4 ~p~~~~~q~~~~~~---~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~   80 (318)
                      .|..++..|+..|+   +++++|+.||+.|+||+|++|++.||..|++|.|||+|.+..+|+.|+++-||++++|+.||.
T Consensus       167 ~~~~y~~df~~aPnqt~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lgvca~glliy~  246 (975)
T KOG3527|consen  167 HGSDYLSDFKFAPNQTKELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLGVCASGLLIYR  246 (975)
T ss_pred             cccchhhhhccCcchhhhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccccccceeeecccccceEEee
Confidence            34567777887776   799999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q psy3983          81 KE   82 (318)
Q Consensus        81 ~~   82 (318)
                      ..
T Consensus       247 d~  248 (975)
T KOG3527|consen  247 DR  248 (975)
T ss_pred             ch
Confidence            53

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=98.68  E-value=9.8e-08  Score=89.51  Aligned_cols=73  Identities=38%  Similarity=0.550  Sum_probs=66.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcccc
Q psy3983         244 EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLN  316 (318)
Q Consensus       244 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (318)
                      +.||+++.+|+.||.++++++++++.+|.+++++|..|+++++++++++..|++++.++++++++|+.++++.
T Consensus         1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~   73 (246)
T PF00769_consen    1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ   73 (246)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999999999988765

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>smart00295 B41 Band 4

Probab=98.49  E-value=3.3e-07  Score=80.00  Aligned_cols=95  Identities=31%  Similarity=0.510  Sum_probs=72.6

Q ss_pred             HHHHHHHhccCcccceeEEe--ecCCCCe-EEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHH
Q psy3983          40 MEYLKIAQDLEMYGVNYFEI--KNKKGTE-LWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEI  116 (318)
Q Consensus        40 ~efLkvaq~Le~yGv~YFgL--~d~kg~~-~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL  116 (318)
                      --+-.+|+++++-..+||||  .+..+.. .||.....             +.++..+ ..++.|.|+++||++++. .+
T Consensus        28 ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~-------------l~~~~~~-~~~~~l~fr~r~~~~~~~-~~   92 (207)
T smart00295       28 ELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKT-------------LLDQDVK-SEPLTLYFRVKFYPPDPL-QL   92 (207)
T ss_pred             HHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccC-------------HHHhcCC-CCCcEEEEEEEEccCCHH-Hh
Confidence            33445788888888999999  5544444 89986652             3333211 156899999999999874 46


Q ss_pred             HHhHHHH-HHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983         117 IQDITLR-LFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus       117 ~qe~TRy-lf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      .++.+++ ++|+|++.|+++ +++|+.+.++.|+.
T Consensus        93 ~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laa  127 (207)
T smart00295       93 KEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAA  127 (207)
T ss_pred             cchhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHH
Confidence            7788888 999999999999 89999999999984

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>KOG4371|consensus

Probab=98.48  E-value=7.1e-08  Score=104.30  Aligned_cols=144  Identities=18%  Similarity=0.357  Sum_probs=120.2

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEe-ecC----------CCCeEEEe
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEI-KNK----------KGTELWLG   70 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL-~d~----------kg~~~WLg   70 (318)
                      .|+|.+|...-+  .+.+...+..+|+-.-|.+..+|.+.|+++|+..+.||.+|+.+ .++          .+.+.|+|
T Consensus       665 hY~ps~yss~e~--q~li~~~~p~~Hg~~~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~g  742 (1332)
T KOG4371|consen  665 HYLPSKYSSFED--QSLIKNILPELHGHYAGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIG  742 (1332)
T ss_pred             hhcccceecccc--hhhhhhccccccCchhhcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCCCCCcccc
Confidence            367777766544  56788889999999999999999999999999999999999999 333          24589999


Q ss_pred             ecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccc
Q psy3983          71 VDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPK  150 (318)
Q Consensus        71 l~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~  150 (318)
                      +..+||.||...+..+                                                           .+  .
T Consensus       743 p~prgIsi~~p~~~a~-----------------------------------------------------------~~--~  761 (1332)
T KOG4371|consen  743 PMPRGISIYEPQGGAR-----------------------------------------------------------EV--I  761 (1332)
T ss_pred             ccccceeccccCCCCc-----------------------------------------------------------cc--c
Confidence            9999999998654410                                                           01  2


Q ss_pred             cCccCccccccccccceEEEEeCCCC-CCceEEEcCCccchHHHHHHhhhccccccccc
Q psy3983         151 IGFPWSEIRNISFNDRKFIIKPIDKK-APDFVFFAPRVRVNKRILALCMGNHELYMRRR  208 (318)
Q Consensus       151 ~~f~W~~I~~lsf~~kkF~Ikp~dkk-~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr  208 (318)
                      ..|||..|..+.|.+++|.|-+.+-. ....+|++..+.-+.+.+++...+|.|||.++
T Consensus       762 a~fPpa~v~~lqFd~k~f~Is~~g~p~~~i~~~yt~hh~~S~~~L~~~~~thR~ym~~~  820 (1332)
T KOG4371|consen  762 AEFPPAQVQTLQFDKKRFVISAVGAPDEQIETFYTDHHSKSSYFLRFAASTHRWYMKMR  820 (1332)
T ss_pred             CCCCCCCCCceeecCCCceeecCCCCCcceEEeeccCCcchhHHHHHHHHhhHHHhhch
Confidence            58999999999999999999885432 34579999999999999999999999999876

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=98.38  E-value=6.9e-07  Score=68.40  Aligned_cols=55  Identities=31%  Similarity=0.620  Sum_probs=42.3

Q ss_pred             HHHHHhccCcccceeEEe-e--cCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecC
Q psy3983          42 YLKIAQDLEMYGVNYFEI-K--NKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYP  109 (318)
Q Consensus        42 fLkvaq~Le~yGv~YFgL-~--d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp  109 (318)
                      +-.||.+|++-..+|||| .  ++++...||+++++             +.+|.....+|+.+.|+|||||
T Consensus        23 ~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~-------------l~~q~~~~~~~~~l~frvkfy~   80 (80)
T PF09379_consen   23 LEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKK-------------LKKQLKKNNPPFTLYFRVKFYP   80 (80)
T ss_dssp             HHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSB-------------GGGSTBTSSSSEEEEEEESS--
T ss_pred             HHHHHHHcCCCCccEEEEEEeecCCCcceeccCccc-------------HHHHcCCCCCCEEEEEEEEECC
Confidence            445888899999999999 5  78899999999984             4445433478999999999998

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4

Probab=98.26  E-value=2e-06  Score=69.91  Aligned_cols=53  Identities=34%  Similarity=0.688  Sum_probs=46.4

Q ss_pred             CCc--hhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeE
Q psy3983           3 VSP--LRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYF   57 (318)
Q Consensus         3 ~~p--~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YF   57 (318)
                      ++|  ..++..  ++.+.|..+|...|++..|+++.+|...||++|+++++||+.||
T Consensus        72 ~iP~~~~~~~~--~~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F  126 (126)
T PF00373_consen   72 FIPKAPKLIKK--MKQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF  126 (126)
T ss_dssp             TSSHHHHHHCC--STHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred             hhhhhHHHHhh--hhHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence            688  666664  56889999999999999999999999999999999999999998

1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....

>KOG3531|consensus

Probab=98.11  E-value=9e-07  Score=94.41  Aligned_cols=110  Identities=21%  Similarity=0.257  Sum_probs=94.0

Q ss_pred             hHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeecCCcccccccccccc
Q psy3983          16 PSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKK   95 (318)
Q Consensus        16 ~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~   95 (318)
                      ...++.+|+..|..|.|+++.++.++-|.+|.++++||++.+..+|-.|..+-|.+...||.|                 
T Consensus       189 q~~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~V-----------------  251 (1036)
T KOG3531|consen  189 QDELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGILV-----------------  251 (1036)
T ss_pred             HHHHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhHH-----------------
Confidence            346889999999999999999999999999999999999998877777777666666555554                 


Q ss_pred             CCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCcccccc
Q psy3983          96 ENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLT  148 (318)
Q Consensus        96 ~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~  148 (318)
                           |+|+.|||.+++.. +..+.++|++||+.+++... -+-|+.+.+.+..
T Consensus       252 -----fr~~tkinTf~wAk-irklsfkrk~fLiklhp~~~g~~qdt~ef~~~~r  299 (1036)
T KOG3531|consen  252 -----FRGLTKINTFNWAK-IRKLSFKRKRFLIKLHPDSYGYYKDTLEFLMASR  299 (1036)
T ss_pred             -----HhcceeccCCCHHH-HHHHHHHHHhhhheeccccccchhhhHHHHHHhH
Confidence                 56889999999875 99999999999999998777 6889988876654

>KOG0792|consensus

Probab=98.07  E-value=5.1e-06  Score=90.59  Aligned_cols=68  Identities=25%  Similarity=0.547  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeecCCc
Q psy3983          17 SEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDN   84 (318)
Q Consensus        17 ~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk   84 (318)
                      ++++++|..+|+.|.|+.+.+|++.||+.|++|+.||.++|..+|..|.++-||+..-||.||.++.+
T Consensus       183 ~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~lGi~~~Gi~V~~~~g~  250 (1144)
T KOG0792|consen  183 EEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINLGIARVGILVPGQNGR  250 (1144)
T ss_pred             HHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceecccccCCCcceeeeeeeceeEeeccCcc
Confidence            48999999999999999999999999999999999999999999999999999999999999985554

>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4

Probab=96.52  E-value=0.00093  Score=54.19  Aligned_cols=34  Identities=29%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             HHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983         116 IIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus       116 L~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      +.+++|++++|+|+|.|+++ +++|+.+.|+.|++
T Consensus         5 ~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAA   39 (126)
T PF00373_consen    5 IDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAA   39 (126)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHH
Confidence            77899999999999999999 89999999999984

1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....

>KOG0248|consensus

Probab=95.16  E-value=0.025  Score=60.50  Aligned_cols=78  Identities=23%  Similarity=0.521  Sum_probs=66.5

Q ss_pred             CCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEe-----ecCCCCeEEEeecCCcee
Q psy3983           3 VSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEI-----KNKKGTELWLGVDALGLN   77 (318)
Q Consensus         3 ~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL-----~d~kg~~~WLgl~k~Gi~   77 (318)
                      +-|.++.+-  -+.+.+...|..-|..++|+++.|.+--||-||.+.+.||...|-.     -...++-+||.|...|+.
T Consensus       750 FyP~ryrdg--a~~eqLR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvS  827 (936)
T KOG0248|consen  750 FYPSKMLDV--ACIKSLRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVS  827 (936)
T ss_pred             hChhhhhcc--CCHHHHHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcce
Confidence            567777663  4678899999999999999999999999999999999999999988     233456799999999999


Q ss_pred             eeecC
Q psy3983          78 IYEKE   82 (318)
Q Consensus        78 Iy~~~   82 (318)
                      |.+.+
T Consensus       828 lLd~N  832 (936)
T KOG0248|consen  828 LLDRN  832 (936)
T ss_pred             ecccc
Confidence            87654

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.10  E-value=0.27  Score=52.96  Aligned_cols=34  Identities=38%  Similarity=0.564  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLK  286 (318)
Q Consensus       253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (318)
                      +..|.+++|.|.++...+|...++.++.|+.++.
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~  576 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQ  576 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677777777777777777777777777664

; GO: 0016021 integral to membrane

>KOG4261|consensus

Probab=94.92  E-value=0.019  Score=61.95  Aligned_cols=67  Identities=33%  Similarity=0.441  Sum_probs=56.1

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEee----c-CCCCeEEEeecCC
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIK----N-KKGTELWLGVDAL   74 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~----d-~kg~~~WLgl~k~   74 (318)
                      +++|..++++-      .+.+|...|+++.|++..+|...|.+.|..|..||+.||-++    . .++++..||++|-
T Consensus       262 d~lpk~y~k~k------~ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknklVprlLgv~K~  333 (1003)
T KOG4261|consen  262 DFLPKEYVKQK------GEKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPRLLGVTKE  333 (1003)
T ss_pred             ccChHHHhccc------cchhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEEehhhccCcccccchhhhhhHH
Confidence            46677666542      278999999999999999999999999999999999999992    1 2467899999984

>KOG3727|consensus

Probab=94.29  E-value=0.057  Score=56.72  Aligned_cols=56  Identities=16%  Similarity=0.280  Sum_probs=50.3

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEe
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEI   59 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL   59 (318)
                      .|+-.+++++|+  .-.+..+|.+-|.+..-|+..||-+.||..=|.|+.||+.||=+
T Consensus       504 ~~vSPr~~rk~k--sKQ~~~RILEAHqNVaQlsl~EAKLrfIQAWQSLPeFGityfiv  559 (664)
T KOG3727|consen  504 CYVSPRYVRKLK--SKQITQRILEAHQNVAQLSLTEAKLRFIQAWQSLPEFGITYFIV  559 (664)
T ss_pred             hhcCHHHHHHHh--hHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHhhccccCcEEEEE
Confidence            456678888887  33499999999999999999999999999999999999999988

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=91.47  E-value=3.9  Score=44.35  Aligned_cols=39  Identities=33%  Similarity=0.464  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q psy3983         274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ  312 (318)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (318)
                      ...+.++||.++++++.+....+.+...++.+.+.++..
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788888888888777777777777777766653

; GO: 0016021 integral to membrane

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.67  E-value=1.8  Score=40.37  Aligned_cols=90  Identities=26%  Similarity=0.340  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEE  294 (318)
Q Consensus       215 vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (318)
                      +++|+.+..+-..+-..-..+|.........+|.+...|..|+..+++++.++...|..++.....++......+.....
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~   82 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKV   82 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777666666666667788888888899999999999999888888777776666665555555555555555555


Q ss_pred             HHHHHHHHHH
Q psy3983         295 LEARQTELQL  304 (318)
Q Consensus       295 ~~~~~~~~~~  304 (318)
                      |+.+......
T Consensus        83 lE~r~~~~ee   92 (237)
T PF00261_consen   83 LENREQSDEE   92 (237)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHhHHHHHHH
Confidence            5554444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=89.78  E-value=4.5  Score=38.28  Aligned_cols=38  Identities=34%  Similarity=0.417  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL  304 (318)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (318)
                      ....+.+.+..|.+|.++......++..|..+..+++.
T Consensus        80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~  117 (246)
T PF00769_consen   80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEARE  117 (246)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666666666666655544444

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG1029|consensus

Probab=89.53  E-value=6.4  Score=43.55  Aligned_cols=30  Identities=30%  Similarity=0.378  Sum_probs=18.9

Q ss_pred             hHHHHHHhhhcccccccccCCCcHHHHHHHHHH
Q psy3983         190 NKRILALCMGNHELYMRRRKPDTIDVQQMKAQA  222 (318)
Q Consensus       190 ~K~iw~lcv~~H~Ff~~rr~~d~~~vqqmkaqa  222 (318)
                      -|+==++-.||-.+=+||+   .++-||-|.++
T Consensus       316 DKrkeNy~kGqaELerRRq---~leeqqqrere  345 (1118)
T KOG1029|consen  316 DKRKENYEKGQAELERRRQ---ALEEQQQRERE  345 (1118)
T ss_pred             hhhHHhHhhhhHHHHHHHH---HHHHHHHHHHH
Confidence            4555567788888876655   45556555444

>PRK11637 AmiB activator; Provisional

Probab=88.48  E-value=9.2  Score=38.41  Aligned_cols=53  Identities=13%  Similarity=0.191  Sum_probs=26.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEAR  298 (318)
Q Consensus       246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (318)
                      .+.+...+..+|...+.+....++++...+..+..++.++..+++..+.+...
T Consensus        73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555555555555555544444444333

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=88.31  E-value=18  Score=37.96  Aligned_cols=7  Identities=29%  Similarity=0.392  Sum_probs=2.7

Q ss_pred             hhhhccc
Q psy3983         309 IRNQSNL  315 (318)
Q Consensus       309 ~~~~~~~  315 (318)
                      |..-++|
T Consensus       138 le~~a~l  144 (514)
T TIGR03319       138 LERISGL  144 (514)
T ss_pred             HHHHhCC
Confidence            3333333

>PRK11637 AmiB activator; Provisional

Probab=88.22  E-value=7.2  Score=39.17  Aligned_cols=63  Identities=22%  Similarity=0.365  Sum_probs=45.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3983         246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP  308 (318)
Q Consensus       246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (318)
                      ..++..+++..|..++.++...+..+...+..+..++.++..++.+...++++....+..+..
T Consensus        66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~  128 (428)
T PRK11637         66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA  128 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566677777777777777777777777777777777777777777777777666655543

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=87.94  E-value=8  Score=43.81  Aligned_cols=19  Identities=16%  Similarity=0.170  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHhhHhHHHHH
Q psy3983         222 AREEKNAKQQQRDKLQLEI  240 (318)
Q Consensus       222 a~eek~~~~~er~~l~~e~  240 (318)
                      .+|+..++..+|..+..|+
T Consensus       441 e~e~~er~~~er~~~E~er  459 (1021)
T PTZ00266        441 EKENAHRKALEMKILEKKR  459 (1021)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444433

>PRK12704 phosphodiesterase; Provisional

Probab=87.51  E-value=18  Score=37.99  Aligned_cols=17  Identities=24%  Similarity=0.608  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy3983         255 ERLKQLEVEMAKRDQDL  271 (318)
Q Consensus       255 ~~l~~~~~~~~~~~~~~  271 (318)
                      .+|.+.|+...+..+.|
T Consensus        82 ~~L~qrE~rL~~Ree~L   98 (520)
T PRK12704         82 NELQKLEKRLLQKEENL   98 (520)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444443333333333

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=87.48  E-value=6.5  Score=44.52  Aligned_cols=7  Identities=0%  Similarity=0.078  Sum_probs=3.0

Q ss_pred             HHHHHHH
Q psy3983          22 SITTWWK   28 (318)
Q Consensus        22 ~I~~~hk   28 (318)
                      .|.-+|.
T Consensus       130 ALaYLHs  136 (1021)
T PTZ00266        130 ALAYCHN  136 (1021)
T ss_pred             HHHHHHh
Confidence            3344553

>PRK12704 phosphodiesterase; Provisional

Probab=86.88  E-value=21  Score=37.37  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         253 SVERLKQLEVEMAKRDQDLMEAQ  275 (318)
Q Consensus       253 ~~~~l~~~~~~~~~~~~~~~~~~  275 (318)
                      .+++|.+-++...+..+.|...+
T Consensus        87 rE~rL~~Ree~Le~r~e~Lekke  109 (520)
T PRK12704         87 LEKRLLQKEENLDRKLELLEKRE  109 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.75  E-value=7.2  Score=36.21  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983         278 IRRLEEQLKQLQAAKEELEARQTELQLELQPIR  310 (318)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (318)
                      +.+|+++.+++.++-+.+.++...++.++..++
T Consensus       134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884        134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444433

>KOG1029|consensus

Probab=84.96  E-value=15  Score=40.89  Aligned_cols=36  Identities=19%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQL  285 (318)
Q Consensus       250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (318)
                      ++|-+++-+..++.-++++.+|...-++-+++|.++
T Consensus       352 reE~ekkererqEqErk~qlElekqLerQReiE~qr  387 (1118)
T KOG1029|consen  352 REEEEKKERERQEQERKAQLELEKQLERQREIERQR  387 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555556666666666666656555555443

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=84.72  E-value=29  Score=35.39  Aligned_cols=6  Identities=100%  Similarity=1.232  Sum_probs=2.2

Q ss_pred             HHHHHH
Q psy3983         256 RLKQLE  261 (318)
Q Consensus       256 ~l~~~~  261 (318)
                      ||++++
T Consensus       102 rlk~le  107 (387)
T PRK09510        102 RLKQLE  107 (387)
T ss_pred             HHHHHH
Confidence            333333

>PRK00106 hypothetical protein; Provisional

Probab=83.38  E-value=33  Score=36.34  Aligned_cols=11  Identities=27%  Similarity=0.501  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q psy3983         261 EVEMAKRDQDL  271 (318)
Q Consensus       261 ~~~~~~~~~~~  271 (318)
                      |+...+..+.|
T Consensus       103 E~rL~qREE~L  113 (535)
T PRK00106        103 ESRLTERATSL  113 (535)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>KOG0742|consensus

Probab=83.36  E-value=27  Score=36.71  Aligned_cols=19  Identities=21%  Similarity=0.284  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy3983         214 DVQQMKAQAREEKNAKQQQ  232 (318)
Q Consensus       214 ~vqqmkaqa~eek~~~~~e  232 (318)
                      +.--|.+|+.-|+.+.+.|
T Consensus       118 ~~eA~qa~~~~er~r~~~E  136 (630)
T KOG0742|consen  118 EYEAAQAQLKSERIRVQAE  136 (630)
T ss_pred             HHHHHHHhhhHHHHHHHHH
Confidence            3334566666666666664

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=82.75  E-value=28  Score=35.98  Aligned_cols=73  Identities=27%  Similarity=0.408  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         222 AREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA  297 (318)
Q Consensus       222 a~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      |.++|..-..||++...|-.   ++-.+++-.++++.+...+..+++++|...++....|...++.+-++...|++
T Consensus        93 a~~~k~~~e~er~~~~~El~---~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~a  165 (499)
T COG4372          93 AQGEKRAAETEREAARSELQ---KARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEA  165 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555566665544432   22233444555566666666666666666665555555444444444433333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=82.40  E-value=34  Score=36.41  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983         270 DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN  311 (318)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (318)
                      .|.+....+.+|...++.++.|++.|.....++-..+.+|+.
T Consensus       411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~  452 (546)
T PF07888_consen  411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ  452 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777889999999999999999999999888888764

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=82.05  E-value=43  Score=32.67  Aligned_cols=55  Identities=27%  Similarity=0.470  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983         256 RLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR  310 (318)
Q Consensus       256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (318)
                      .|..+..+......++......+.+|+.++..+....+.+.++..++..+++.+.
T Consensus       210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555556666666666666666666666665555443

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=80.04  E-value=18  Score=27.68  Aligned_cols=48  Identities=27%  Similarity=0.372  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA  297 (318)
Q Consensus       250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (318)
                      ++.+.+.|.............|.++....+.|..+++.+..+.+++.+
T Consensus        13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen   13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            444556666666666667777777777888888887777777766543

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	318
2i1j_A	575	Moesin From Spodoptera Frugiperda At 2.1 Angstroms		3e-72
1e5w_A	346	Structure Of Isolated Ferm Domain And First Long He		1e-43
2emt_A	322	Crystal Structure Analysis Of The Radixin Ferm Doma		2e-40
1j19_A	317	Crystal Structure Of The Radxin Ferm Domain Complex		3e-40
2d10_A	312	Crystal Structure Of The Radixin Ferm Domain Comple		3e-40
2d2q_A	310	Crystal Structure Of The Dimerized Radixin Ferm Dom		3e-40
2zpy_A	312	Crystal Structure Of The Mouse Radxin Ferm Domain C		4e-40
1gc6_A	297	Crystal Structure Of The Radixin Ferm Domain Comple		1e-33
1gc6_A	297	Crystal Structure Of The Radixin Ferm Domain Comple		4e-33
1ni2_A	296	Structure Of The Active Ferm Domain Of Ezrin Length		3e-33
1ni2_A	296	Structure Of The Active Ferm Domain Of Ezrin Length		3e-32
1sgh_A	297	Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptid		3e-33
1ef1_A	294	Crystal Structure Of The Moesin Ferm DomainTAIL DOM		1e-31
1isn_A	323	Crystal Structure Of Merlin Ferm Domain Length = 32		9e-30
1h4r_A	314	Crystal Structure Of The Ferm Domain Of Merlin, The		2e-27
1h4r_A	314	Crystal Structure Of The Ferm Domain Of Merlin, The		4e-20
1h4r_B	314	Crystal Structure Of The Ferm Domain Of Merlin, The		2e-27
1h4r_B	314	Crystal Structure Of The Ferm Domain Of Merlin, The		4e-20
3u8z_A	300	Human Merlin Ferm Domain Length = 300		3e-27
3u8z_A	300	Human Merlin Ferm Domain Length = 300		6e-20
3bin_A	283	Structure Of The Dal-1 And Tslc1 (372-383) Complex		1e-06
2he7_A	283	Ferm Domain Of Epb41l3 (Dal-1) Length = 283		1e-06
3au4_A	555	Structure Of The Human Myosin-X Myth4-Ferm Cassette		5e-06
3pzd_A	511	Structure Of The Myosin X Myth4-FermDCC COMPLEX Len		6e-06

>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms Resolution Length = 575

Iteration: 1
 Score =  268 bits (685), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 135/169 (79%), Positives = 149/169 (88%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR
Sbjct: 234 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 293
Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
           RRKPDTIDVQQMKAQAREEK AKQ QR+KLQLEIAARE+AEKK QE  +RL+Q++ EM +
Sbjct: 294 RRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMER 353
Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
              +L+EAQ+MI RLEEQL+QLQAAKEELE RQ ELQ  +Q +    N+
Sbjct: 354 SQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNM 402

>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of Moesin Length = 346

Iteration: 1
 Score =  173 bits (438), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 88/94 (93%)
Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
           N  LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHEL
Sbjct: 231 NDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHEL 290
Query: 204 YMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQ 237
           YMRRRKPDTI+VQQMKAQAREEK+ KQ +R  L+
Sbjct: 291 YMRRRKPDTIEVQQMKAQAREEKHQKQMERAMLE 324

>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain Complexed With Adhesion Molecule Psgl-1 Length = 322

Iteration: 1
 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 71/83 (85%), Positives = 80/83 (96%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 236 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 295
Query: 207 RRKPDTIDVQQMKAQAREEKNAK 229
           RRKPDTI+VQQMKAQAR + + +
Sbjct: 296 RRKPDTIEVQQMKAQARVDSSGR 318

>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With The Icam-2 Cytoplasmic Peptide Length = 317

Iteration: 1
 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/82 (86%), Positives = 79/82 (96%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293
Query: 207 RRKPDTIDVQQMKAQAREEKNA 228
           RRKPDTI+VQQMKAQAR + + 
Sbjct: 294 RRKPDTIEVQQMKAQARVDSSG 315

>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With The Nherf-1 C-Terminal Tail Peptide Length = 312

Iteration: 1
 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/77 (92%), Positives = 77/77 (100%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 236 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 295
Query: 207 RRKPDTIDVQQMKAQAR 223
           RRKPDTI+VQQMKAQAR
Sbjct: 296 RRKPDTIEVQQMKAQAR 312

>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain Length = 310

Iteration: 1
 Score =  161 bits (408), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/77 (92%), Positives = 77/77 (100%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293
Query: 207 RRKPDTIDVQQMKAQAR 223
           RRKPDTI+VQQMKAQAR
Sbjct: 294 RRKPDTIEVQQMKAQAR 310

>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain Complexed With The Mouse Cd44 Cytoplasmic Peptide Length = 312

Iteration: 1
 Score =  161 bits (408), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 71/77 (92%), Positives = 77/77 (100%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 236 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 295
Query: 207 RRKPDTIDVQQMKAQAR 223
           RRKPDTI+VQQMKAQAR
Sbjct: 296 RRKPDTIEVQQMKAQAR 312

>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With Inositol-(1,4,5)-Triphosphate Length = 297

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 63/82 (76%), Positives = 72/82 (87%)
Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
           P RV++QHK++  +WE  I  W +EH+GMLRED+MMEYLKIAQDLEMYGVNYFEIKNKKG
Sbjct: 154 PQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKG 213
Query: 65  TELWLGVDALGLNIYEKEDNLT 86
           TELWLGVDALGLNIYE +D LT
Sbjct: 214 TELWLGVDALGLNIYEHDDKLT 235

>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With Inositol-(1,4,5)-Triphosphate Length = 297

Iteration: 1
 Score =  138 bits (348), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 59/64 (92%), Positives = 64/64 (100%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293
Query: 207 RRKP 210
           RRKP
Sbjct: 294 RRKP 297

>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin Length = 296

Iteration: 1
 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 72/82 (87%)
Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
           P RVMDQHK++  +WE  I  W  EH+GML+++AM+EYLKIAQDLEMYG+NYFEIKNKKG
Sbjct: 153 PQRVMDQHKLTRDQWEDRIQVWHAEHRGMLKDNAMLEYLKIAQDLEMYGINYFEIKNKKG 212
Query: 65  TELWLGVDALGLNIYEKEDNLT 86
           T+LWLGVDALGLNIYEK+D LT
Sbjct: 213 TDLWLGVDALGLNIYEKDDKLT 234

>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin Length = 296

Iteration: 1
 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 63/64 (98%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRIL LCMGNHELYMR
Sbjct: 233 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILQLCMGNHELYMR 292
Query: 207 RRKP 210
           RRKP
Sbjct: 293 RRKP 296

>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide Length = 297

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 65/67 (97%)
Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
           N  LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHEL
Sbjct: 231 NDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHEL 290
Query: 204 YMRRRKP 210
           YMRRRKP
Sbjct: 291 YMRRRKP 297

>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN COMPLEX Length = 294

Iteration: 1
 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)
Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
           N  LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALC GNHEL
Sbjct: 228 NDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCXGNHEL 287
Query: 204 YMRRRKP 210
           Y RRRKP
Sbjct: 288 YXRRRKP 294

>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain Length = 323

Iteration: 1
 Score =  127 bits (319), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 76/94 (80%)
Query: 143 PNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202
           P   LTPKI FPW+EIRNIS++D++F IKP+DKK   F F + ++RVNK IL LC+GNH+
Sbjct: 229 PENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHD 288
Query: 203 LYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKL 236
           L+MRRRK D+++VQQMKAQAREEK  KQ +R +L
Sbjct: 289 LFMRRRKADSLEVQQMKAQAREEKARKQMERQRL 322

>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 69/86 (80%)
Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
           P RV++ ++M+P  WE  IT W+ EH+G  R++A MEYLKIAQDLEMYGVNYF I+NKKG
Sbjct: 171 PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKG 230
Query: 65  TELWLGVDALGLNIYEKEDNLTNVMS 90
           TEL LGVDALGL+IY+ E+ LT  +S
Sbjct: 231 TELLLGVDALGLHIYDPENRLTPKIS 256

>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 143 PNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202
           P   LTPKI FPW+EIRNIS++D++F IKP+DKK   F F + ++RVNK IL LC+GNH+
Sbjct: 247 PENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHD 306
Query: 203 LYMRRRK 209
           L+MRRRK
Sbjct: 307 LFMRRRK 313

>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 69/86 (80%)
Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
           P RV++ ++M+P  WE  IT W+ EH+G  R++A MEYLKIAQDLEMYGVNYF I+NKKG
Sbjct: 171 PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKG 230
Query: 65  TELWLGVDALGLNIYEKEDNLTNVMS 90
           TEL LGVDALGL+IY+ E+ LT  +S
Sbjct: 231 TELLLGVDALGLHIYDPENRLTPKIS 256

>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 143 PNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202
           P   LTPKI FPW+EIRNIS++D++F IKP+DKK   F F + ++RVNK IL LC+GNH+
Sbjct: 247 PENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHD 306
Query: 203 LYMRRRK 209
           L+MRRRK
Sbjct: 307 LFMRRRK 313

>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain Length = 300

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 69/86 (80%)
Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
           P RV++ ++M+P  WE  IT W+ EH+G  R++A MEYLKIAQDLEMYGVNYF I+NKKG
Sbjct: 158 PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKG 217
Query: 65  TELWLGVDALGLNIYEKEDNLTNVMS 90
           TEL LGVDALGL+IY+ E+ LT  +S
Sbjct: 218 TELLLGVDALGLHIYDPENRLTPKIS 243

>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain Length = 300

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 143 PNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202
           P   LTPKI FPW+EIRNIS++D++F IKP+DKK   F F + ++RVNK IL LC+GNH+
Sbjct: 234 PENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHD 293
Query: 203 LYMRRRK 209
           L+MRRRK
Sbjct: 294 LFMRRRK 300

>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex Length = 283

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 3   VSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNK 62
           +S  R    H     E E  +    K H+GM   +A M +L+ A+ L MYGV+    K+ 
Sbjct: 143 ISEFRFAPNHT---KELEDKVIELHKSHRGMTPAEAEMHFLENAKKLSMYGVDLHHAKDS 199
Query: 63  KGTELWLGVDALGLNIY 79
           +G E+ LGV A GL IY
Sbjct: 200 EGVEIMLGVCASGLLIY 216

>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1) Length = 283

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 3   VSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNK 62
           +S  R    H     E E  +    K H+GM   +A M +L+ A+ L MYGV+    K+ 
Sbjct: 143 ISEFRFAPNHT---KELEDKVIELHKSHRGMTPAEAEMHFLENAKKLSMYGVDLHHAKDS 199
Query: 63  KGTELWLGVDALGLNIY 79
           +G E+ LGV A GL IY
Sbjct: 200 EGVEIMLGVCASGLLIY 216

>pdb|3AU4|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette Bound To Its Specific Cargo, Dcc Length = 555

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 17  SEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT---ELWLGVDA 73
           S   +SI   W++ +GM +E AM +Y+ + ++   YG   F+++ K+G    ELWLGV A
Sbjct: 415 SSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSA 474
Query: 74  LGLNIYEKEDN 84
             +++Y++ + 
Sbjct: 475 DAVSVYKRGEG 485

>pdb|3PZD|A Chain A, Structure Of The Myosin X Myth4-FermDCC COMPLEX Length = 511

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 17  SEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT---ELWLGVDA 73
           S   +SI   W++ +GM +E AM +Y+ + ++   YG   F+++ K+G    ELWLGV A
Sbjct: 382 SSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSA 441
Query: 74  LGLNIYEKEDN 84
             +++Y++ + 
Sbjct: 442 DAVSVYKRGEG 452

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	1e-29
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	5e-25
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	2e-06
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	3e-22
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	4e-19
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	5e-08
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	3e-21
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	7e-20
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	2e-09
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	1e-19
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	5e-19
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	3e-11
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	4e-04
4f7g_A	222	Talin-1; alpha-helix bundle, integrin activation,	6e-18
4f7g_A	222	Talin-1; alpha-helix bundle, integrin activation,	5e-13
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	8e-18
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	3e-05
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	5e-16
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	5e-06
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	5e-15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-04
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
2al6_A	375	Focal adhesion kinase 1; transferase; 2.35A {Gallu	1e-06
4eku_A	392	Protein-tyrosine kinase 2-beta; proline-rich tyros	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	3e-05
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	6e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	9e-05

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575

 Score =  117 bits (294), Expect = 1e-29
 Identities = 134/170 (78%), Positives = 148/170 (87%)

Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
           +  LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL
Sbjct: 231 DDKLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 290

Query: 204 YMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVE 263
           YMRRRKPDTIDVQQMKAQAREEK AKQ QR+KLQLEIAARE+AEKK QE  +RL+Q++ E
Sbjct: 291 YMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEE 350

Query: 264 MAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQS 313
           M +   +L+EAQ+MI RLEEQL+QLQAAKEELE RQ ELQ  +Q +    
Sbjct: 351 MERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETK 400

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575

 Score =  104 bits (259), Expect = 5e-25
 Identities = 100/316 (31%), Positives = 153/316 (48%), Gaps = 11/316 (3%)

Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
           P RV DQHKMS  EWE SIT WW+EH+GMLREDAMMEYLKIAQDLEMYGVNYFEI+NKK 
Sbjct: 154 PQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKN 213

Query: 65  TELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRL 124
           TELWLGVDALGLNIYEK+D LT  +     +   + F    KF     ++ I +     +
Sbjct: 214 TELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFN-DRKFI----IKPIDKKAPDFV 268

Query: 125 FYLQVSRSAGSRVRFPPGPNCL--LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVF 182
           F+    R     +    G + L     K      +       + K   +   +K    + 
Sbjct: 269 FFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIA 328

Query: 183 FAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAA 242
              R    ++     +   +  M R + + ++ Q M  +  E+    Q  +++L+     
Sbjct: 329 ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNE 388

Query: 243 REKAEKKHQESVERLK----QLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEAR 298
            +   ++ +E+         +LE E+  + +++   Q+ +   + + ++LQ   E+   +
Sbjct: 389 LQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRK 448

Query: 299 QTELQLELQPIRNQSN 314
           Q E    L       +
Sbjct: 449 QDEAAAALLAATTPQH 464

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575

 Score = 48.4 bits (114), Expect = 2e-06
 Identities = 36/47 (76%), Positives = 40/47 (85%)

Query: 83  DNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV 129
                VM QDVKKENPLQFKFRAKFYPEDV +E+IQ+ITL+LFYLQV
Sbjct: 60  KLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQV 106

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Length = 314

 Score = 93.9 bits (233), Expect = 3e-22
 Identities = 54/82 (65%), Positives = 67/82 (81%)

Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
           P RV++ ++M+P  WE  IT W+ EH+G  R++A MEYLKIAQDLEMYGVNYF I+NKKG
Sbjct: 171 PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKG 230

Query: 65  TELWLGVDALGLNIYEKEDNLT 86
           TEL LGVDALGL+IY+ E+ LT
Sbjct: 231 TELLLGVDALGLHIYDPENRLT 252

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Length = 314

 Score = 85.0 bits (210), Expect = 4e-19
 Identities = 42/67 (62%), Positives = 54/67 (80%)

Query: 143 PNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202
           P   LTPKI FPW+EIRNIS++D++F IKP+DKK   F F + ++RVNK IL LC+GNH+
Sbjct: 247 PENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHD 306

Query: 203 LYMRRRK 209
           L+MRRRK
Sbjct: 307 LFMRRRK 313

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Length = 314

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 88  VMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV 129
           V+  DV KE P+ F F AKFYPE+  EE++Q+IT  LF+LQV
Sbjct: 82  VLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQV 123

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Length = 294

 Score = 90.4 bits (224), Expect = 3e-21
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
           P RV++QHK++  +WE  I  W +EH+GMLREDA++EYLKIAQDLEMYGVNYF IKNKKG
Sbjct: 151 PQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKG 210

Query: 65  TELWLGVDALGLNIYEKEDNLTNVMS 90
           +ELWLGVDALGLNIYE+ D LT  + 
Sbjct: 211 SELWLGVDALGLNIYEQNDRLTPKIG 236

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Length = 294

 Score = 87.0 bits (215), Expect = 7e-20
 Identities = 59/64 (92%), Positives = 64/64 (100%)

Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
           LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 231 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 290

Query: 207 RRKP 210
           RRKP
Sbjct: 291 RRKP 294

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Length = 294

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 17/95 (17%)

Query: 37  DAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKE 96
           D +++ + + +++  +G+ Y   ++ KG   WL                  V +QDV+KE
Sbjct: 28  DQVVKTIGL-REVWFFGLQY---QDTKGFSTWL-------------KLNKKVTAQDVRKE 70

Query: 97  NPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSR 131
           +PL FKFRAKFYPEDV EE+IQDIT RLF+LQV  
Sbjct: 71  SPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKE 105

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Length = 206

 Score = 84.5 bits (209), Expect = 1e-19
 Identities = 25/199 (12%), Positives = 53/199 (26%), Gaps = 71/199 (35%)

Query: 12  HKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT-----E 66
            +    + E  I    K    M   +A + Y+K+A+ L+ YGV++F +K K         
Sbjct: 74  KEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVP 133

Query: 67  LWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFY 126
             LG+    +   +++            KE   ++                 +I      
Sbjct: 134 RLLGITKECVMRVDEKT-----------KEVIQEWSLT--------------NIK----- 163

Query: 127 LQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPR 186
                                  +          + F D          +   +      
Sbjct: 164 -----------------------RWAASPKSF-TLDFGD---------YQDGYYSVQTTE 190

Query: 187 VRVNKRILALCMGNHELYM 205
               ++I  L  G  ++ +
Sbjct: 191 ---GEQIAQLIAGYIDIIL 206

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296

 Score = 84.6 bits (209), Expect = 5e-19
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 14  MSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDA 73
               E E  +    K ++ M    A +E+L+ A+ L MYGV+  + K+ +G ++ LGV +
Sbjct: 166 NQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCS 225

Query: 74  LGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSA 133
            GL +Y+ +  +       V K   + +K R+ F+ +    E  Q  +   F L   R+A
Sbjct: 226 SGLLVYKDKLRINRFPWPKVLK---ISYK-RSSFFIKIRPGEQEQYESTIGFKLPSYRAA 281

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296

 Score = 62.3 bits (151), Expect = 3e-11
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 153 FPWSEIRNISFNDRKFIIKPIDKKAPD----FVFFAPRVRVNKRILALCMGNHELY 204
           FPW ++  IS+    F IK    +         F  P  R  K++  +C+ +H  +
Sbjct: 240 FPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFF 295

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 20/93 (21%)

Query: 37  DAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKE 96
             + E+L +  + + +G+  +   +   ++ WL             D+   +  Q   + 
Sbjct: 45  KRVCEHLNL-LEEDYFGLAIW---DNATSKTWL-------------DSAKEIKKQ--VRG 85

Query: 97  NPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV 129
            P  F F  KFYP D   ++ +DIT     LQ+
Sbjct: 86  VPWNFTFNVKFYPPDPA-QLTEDITRYYLCLQL 117

>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Length = 222

 Score = 79.9 bits (197), Expect = 6e-18
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 14  MSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT-----ELW 68
               + E  I    K    M   +A + Y+K+A+ L+ YGV++F +K K           
Sbjct: 87  YVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRL 146

Query: 69  LGVDALGLNIYEKED 83
           LG+    +   +++ 
Sbjct: 147 LGITKECVMRVDEKT 161

>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Length = 222

 Score = 66.4 bits (162), Expect = 5e-13
 Identities = 7/57 (12%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 153 FPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRK 209
           +  + I+  + + + F +   D +   +     +    ++I  L  G  ++ ++++K
Sbjct: 168 WSLTNIKRWAASPKSFTLDFGDYQDGYYSV---QTTEGEQIAQLIAGYIDIILKKKK 221

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Length = 371

 Score = 81.9 bits (202), Expect = 8e-18
 Identities = 25/197 (12%), Positives = 50/197 (25%), Gaps = 71/197 (36%)

Query: 14  MSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT-----ELW 68
               + E  I    K    M   +A + Y+K+A+ L+ YGV++F +K K           
Sbjct: 241 YVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRL 300

Query: 69  LGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQ 128
           LG+    +               +  KE   ++                 +I        
Sbjct: 301 LGITKECVMRV-----------DEKTKEVIQEWSLT--------------NIK------- 328

Query: 129 VSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVR 188
                                +          + F D +            +        
Sbjct: 329 ---------------------RWAASPKSF-TLDFGDYQ---------DGYYSVQTTE-- 355

Query: 189 VNKRILALCMGNHELYM 205
             ++I  L  G  ++ +
Sbjct: 356 -GEQIAQLIAGYIDIIL 371

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Length = 371

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 17/94 (18%)

Query: 37  DAMMEYLKIAQDLEMYGVNYFEI-KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKK 95
             +   + I    + Y +    + + K     WL             D+   +  Q V++
Sbjct: 113 MTICARIGITNH-DEYSLVRELMEEKKDDELNWL-------------DHGRTLREQGVEE 158

Query: 96  ENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV 129
              L  +   KF+  D   +    + L L Y+Q 
Sbjct: 159 HETLLLRR--KFFYSDQNVDSRDPVQLNLLYVQA 190

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} Length = 322

 Score = 76.2 bits (187), Expect = 5e-16
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 13/95 (13%)

Query: 3   VSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDA-----MMEYLKIAQDLEMYGVNYF 57
           +  +  + + K     W + I   +K                  +L+   ++  YG  +F
Sbjct: 167 LKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFF 226

Query: 58  EI--------KNKKGTELWLGVDALGLNIYEKEDN 84
                      N K   +++GV+  GL++   E  
Sbjct: 227 TGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETK 261

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} Length = 322

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 9/48 (18%), Positives = 22/48 (45%)

Query: 82  EDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV 129
            + L  + + D ++E P  F  R    P +V ++I   + + + + + 
Sbjct: 74  PEILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEA 121

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Length = 555

 Score = 74.6 bits (182), Expect = 5e-15
 Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 2   SVSPLRVMDQH-KMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIK 60
            V   +++D   K   S   +SI   W++ +GM +E AM +Y+ + ++   YG   F+++
Sbjct: 399 KVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVE 458

Query: 61  NKKG---TELWLGVDALGLNIYEKEDN-------LTNVMSQDVKKENPLQFKFR 104
            K+G    ELWLGV A  +++Y++ +          +++S      N  +    
Sbjct: 459 CKEGGFPQELWLGVSADAVSVYKRGEGRPLEVFQYEHILSFGAPLANTYKIVVD 512

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 16/92 (17%), Positives = 43/92 (46%)

Query: 216  QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
            + +  +    +     + +KL+ ++     +E++ + +  R+  L+ E+AK  ++L + Q
Sbjct: 945  KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004

Query: 276  EMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
               + +EE   + +   E+L +   E    L+
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 10/94 (10%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 224  EEKNAKQQQR-----DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMI 278
            E K  + Q++      + +  +      E  +    E+L+     +   +++   A   +
Sbjct: 927  ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986

Query: 279  RRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
              L+E++ +L+    + +  +  ++      +++
Sbjct: 987  LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 15/111 (13%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 201 HELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESV----ER 256
           ++  M  R+  +I +Q+         +  +  +  + L+   R    K+  + +      
Sbjct: 856 NKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARS 915

Query: 257 LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
           +++ +      +  +M+ Q  I    ++ K L      LE   +    +L+
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 214  DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
             +++   Q + EK   ++  DK + E    E+   + +E    LK  + E+ +R  D  +
Sbjct: 995  KLRKELHQTQTEKKTIEEWADKYKHET---EQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051

Query: 274  --AQEMIRRLEEQLKQLQAAKEELEARQ 299
               + M ++L E+ KQL+    +   R 
Sbjct: 1052 EITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 214  DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDL-M 272
            +        +EE    +++  + Q E    E+   K++   E   QL  E+ +++  L  
Sbjct: 981  NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKT 1037

Query: 273  EAQEMIRRLEEQLKQL-QAAKEELEARQTELQLELQPIRNQ 312
            E +E+ RR+ +Q K++ +  +++L     +L+L+L   R +
Sbjct: 1038 EKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 17/94 (18%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 221 QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRR 280
           Q    +   +++  KL++E  + E+ +K H     ++ QL+ ++ +++++     E +  
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953

Query: 281 LEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
           LE          E+L +    L++  +  +N +N
Sbjct: 954 LEITYSTE---TEKLRSDVERLRMSEEEAKNATN 984

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Length = 655

 Score = 57.3 bits (137), Expect = 2e-09
 Identities = 10/96 (10%), Positives = 33/96 (34%), Gaps = 11/96 (11%)

Query: 5   PLRVMDQHKMSPSEWESSITTWWKE----HKGMLREDAMMEYLKIAQD-LEMYGVNYFEI 59
           P R +   K    +W        K+     +    +    + +  A+    +    ++E 
Sbjct: 424 PDREITPLKN-LEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEA 482

Query: 60  KNK-----KGTELWLGVDALGLNIYEKEDNLTNVMS 90
                     +++ + V+  G+   ++++ +   +S
Sbjct: 483 YKFSGPPLPKSDVIVAVNWTGVYFVDEQEQVLLELS 518

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 18/93 (19%), Positives = 44/93 (47%)

Query: 215  VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
             QQ++A+ ++ +       ++L+ E AAR+K + +   +  ++K++E ++   +    + 
Sbjct: 943  SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002

Query: 275  QEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
             +  + LEE++  L     E E +   L     
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 14/92 (15%), Positives = 45/92 (48%)

Query: 216  QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
            Q+++    E +   +++ ++ Q   A ++K +++  +  E+L++ E    K   + + A 
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 276  EMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
              I+++E+ +  ++    +L   +  L+  + 
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 221  QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRR 280
            +  E     Q ++ K+Q ++      E++ +E     ++L++E    D  + + ++ I  
Sbjct: 938  EEEERSQQLQAEKKKMQQQM---LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILI 994

Query: 281  LEEQLKQLQAAKEELEARQTELQLELQ 307
            +E+Q  +L   ++ LE R ++L   L 
Sbjct: 995  MEDQNNKLTKERKLLEERVSDLTTNLA 1021

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 31/150 (20%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 158 IRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQ 217
           I  I +N R F+          F    P ++V ++   +   + EL  +R K      + 
Sbjct: 821 IFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEEL--QRTKERQQKAEA 878

Query: 218 MKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEM 277
              +  ++     ++++ LQ ++ A  +   + +E   RL   + E+ +    L E +  
Sbjct: 879 ELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI---LHEMEAR 935

Query: 278 IRRLEEQLKQLQAAKEELEARQTELQLELQ 307
           I   EE+ +QLQA K++++ +  +L+ +L+
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 16/122 (13%), Positives = 51/122 (41%)

Query: 191 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKH 250
           K          +   ++      +   ++ + + E     +  +      A +++ E+  
Sbjct: 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEIL 929

Query: 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310
            E   R+++ E    +   +  + Q+ +  LEEQL++ +AA+++L+  +     +++ + 
Sbjct: 930 HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989

Query: 311 NQ 312
           + 
Sbjct: 990 DD 991

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 21/107 (19%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 205  MRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQ----L 260
            +++ + D + ++    +  +E+   +++   L   +A  E+  K   +   + +     L
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044

Query: 261  EVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
            EV + K ++   E +++ R+LE +   L     EL+A+  EL+ +L 
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 214  DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
             + ++KAQ  +++   Q    +L+ E + +  A KK +E    +  L+ ++        +
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141

Query: 274  AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNK 317
            A++  R L E+L+ L+   E+     T  Q EL+    + + +K
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTL-DTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 16/100 (16%), Positives = 47/100 (47%)

Query: 215  VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
            + +++ + ++E+ ++Q+     +          ++  E   ++ +L+ ++AK++++L  A
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 275  QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
               +     Q         ELE+  ++LQ +L+  +   N
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 25/103 (24%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 214  DVQQMKAQAREEKNAKQQQRDKLQLEIAA-REKAEKKHQESVERLKQLEVEMAKRDQ--- 269
            +++++K +   E +   +Q  +LQ +IA  + +  KK +E    L +LE E ++++    
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116

Query: 270  DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
             + E +  I  L+E L+  +AA+ + E ++ +L  EL+ ++ +
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 10/99 (10%), Positives = 36/99 (36%)

Query: 214  DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
             +++ +   +E +  K++   +         + + +  E   +L + E E+      L +
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 274  AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
                     +++++L++   +L+      +        Q
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 216  QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
            ++      + KN  +    +L++ +   +K EK  QE  +  ++LE E +   + + E Q
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRL---KKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080

Query: 276  EMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
              I  L+ QL + +   +   AR  +   +      +
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 16/94 (17%), Positives = 41/94 (43%)

Query: 214  DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
            +      + ++ ++      D+       R+  E++  +    L + E +     +   +
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036

Query: 274  AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
             + MI  LE +LK+ + +++ELE  + +L+ E  
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 16/91 (17%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAR-EKAEKKHQESVERLKQLEVEMAKRDQDLM 272
           ++     + R    AK+Q+ +++  E+ AR E+ E++ Q+     K+++ +M   ++ L 
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965

Query: 273 EAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
           E +   ++L+ +        +++E     ++
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIME 996

>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Length = 375

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 5/57 (8%), Positives = 21/57 (36%)

Query: 11  QHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTEL 67
              +        I   +++   + RE++++++ +I   +  +    F+        +
Sbjct: 182 LDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWII 238

>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Length = 392

 Score = 46.0 bits (108), Expect = 9e-06
 Identities = 9/83 (10%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 11  QHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTEL--W 68
           Q  + P ++   I   ++++  +  E+ +M++              +  +  +G  +   
Sbjct: 202 QENLKPKQFRKMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETYRCELIQGWNITVD 261

Query: 69  LGVDALGLNIYEKEDNLTNVMSQ 91
           L +   G+     +D     +++
Sbjct: 262 LVIGPKGIRQLTSQDAKPTCLAE 284

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 61/359 (16%), Positives = 122/359 (33%), Gaps = 114/359 (31%)

Query: 28  KEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT-ELWLGVDALGLNIYEKEDNLT 86
            +    LR+ A++E L+ A+++ + GV         G+ + W+ +D              
Sbjct: 134 LQPYLKLRQ-ALLE-LRPAKNVLIDGV--------LGSGKTWVALDVC------------ 171

Query: 87  NVMSQDVKKENPLQ-F--KFRAKFYPEDVVEEIIQDITLRL---FYLQVSRSAGSRVRF- 139
             +S  V+ +   + F    +    PE V+E ++Q +  ++   +  +   S+  ++R  
Sbjct: 172 --LSYKVQCKMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 140 ------------PPGPNCLL------TPKIGFPWSEIRNISFNDR-KFIIKPIDKKAPDF 180
                        P  NCLL        K    W+     +FN   K ++    K+  DF
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKA---WN-----AFNLSCKILLTTRFKQVTDF 280

Query: 181 VFFAPRVRV-------------NKRILALCMGN------HELYMRRRKPDTIDVQQMKAQ 221
           +  A    +              K +L   +         E  +    P  + +  +   
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSI--IAES 336

Query: 222 AREE----KNAKQQQRDKL----QLEIAAREKAEKKH--------QESV----ERLKQLE 261
            R+      N K    DKL    +  +   E AE +           S       L  + 
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 262 VEMAKRDQDLMEAQEMIRR--LEEQLKQLQAAKEELEARQTELQLEL-QPIRNQSNLNK 317
            ++ K D  ++   ++ +   +E+Q K       E       + LEL   + N+  L++
Sbjct: 397 FDVIKSDVMVV-VNKLHKYSLVEKQPK-------ESTISIPSIYLELKVKLENEYALHR 447

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 29/115 (25%)

Query: 209 KPDTID-----VQQMK----AQAREEKNAKQQQRDKLQLEIA----------AREKAEKK 249
            P+ ID       Q++    A  +E+    Q++   ++ EIA          A  + E++
Sbjct: 399 APEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWERERE 458

Query: 250 HQESVERLKQ------LEVEMAKRDQDLMEAQEM----IRRLEEQLKQLQAAKEE 294
               +   +        E+E+A+R  DL  A E+    + +LE +++ L      
Sbjct: 459 ILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRG 513

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 232 QRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAA 291
           +R KLQLEI      ++K  +S ERLK +E E+AK  +++ + +    R  E L++L+ A
Sbjct: 407 ERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREA 466

Query: 292 KEELEARQTELQLELQPIRNQSNLNKV 318
           +  L+    E++ E++    Q +LN+ 
Sbjct: 467 QHRLD----EVRREIELAERQYDLNRA 489

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.7 bits (97), Expect = 9e-05
 Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 17/87 (19%)

Query: 221 QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRR 280
           +  +E  + ++ R++ +  +   + A K  ++          E AK+D +     E  +R
Sbjct: 79  RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWR-------EKAKKDLE-----EWNQR 126

Query: 281 LEEQLKQLQ-----AAKEELEARQTEL 302
             EQ+++ +     A K   +    ++
Sbjct: 127 QSEQVEKNKINNRIADKAFYQQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	100.0
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	99.97
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	99.97
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	99.95
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	99.82
4f7g_A	222	Talin-1; alpha-helix bundle, integrin activation,	99.79
2al6_A	375	Focal adhesion kinase 1; transferase; 2.35A {Gallu	99.64
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	99.63
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	99.62
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	99.6
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	99.59
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	99.54
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	99.52
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	99.47
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	99.46
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.16
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	99.14
4eku_A	392	Protein-tyrosine kinase 2-beta; proline-rich tyros	99.07
2al6_A	375	Focal adhesion kinase 1; transferase; 2.35A {Gallu	98.99
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	98.58
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	98.51
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	98.45
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.45
4eku_A	392	Protein-tyrosine kinase 2-beta; proline-rich tyros	98.35
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	98.23
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.96
4f7g_A	222	Talin-1; alpha-helix bundle, integrin activation,	95.92
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.75
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.01
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	90.25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	89.44
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	88.07
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	86.0
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	85.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	81.97
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	80.58
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	80.55

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=100.00  E-value=1.3e-55  Score=448.43  Aligned_cols=253  Identities=80%  Similarity=1.214  Sum_probs=207.3

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeec
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEK   81 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~   81 (318)
                      .|+|.+|+++++++++.|+..|..+|++++|+++.+|++.||++|++|++||++||.++|++|+++||||++.||.||..
T Consensus       151 ~~lP~~vl~~~~~s~e~~~~~I~~~hk~l~G~s~~eA~~~yL~~a~~lp~YG~~~F~vkd~~g~~l~LGV~~~GI~v~~~  230 (575)
T 2i1j_A          151 RLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEK  230 (575)
T ss_dssp             CCSCHHHHHTBCCCHHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEECSSEEEEEET
T ss_pred             ccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhccccCCEEEEEEecCCCEEEEEEcCCeeEEEeC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcccccc
Q psy3983          82 EDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNI  161 (318)
Q Consensus        82 ~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~l  161 (318)
                      +++                                                              +.|...|+|++|.++
T Consensus       231 ~~k--------------------------------------------------------------~~~l~~f~w~~I~~i  248 (575)
T 2i1j_A          231 DDK--------------------------------------------------------------LTPKIGFPWSEIRNI  248 (575)
T ss_dssp             TCS--------------------------------------------------------------SSCSEEEEGGGEEEE
T ss_pred             CCC--------------------------------------------------------------cccceEecHHHhhcc
Confidence            776                                                              445678999999999


Q ss_pred             ccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q psy3983         162 SFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIA  241 (318)
Q Consensus       162 sf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d~~~vqqmkaqa~eek~~~~~er~~l~~e~~  241 (318)
                      +|++++|+|++.+++.++|+|++++++.||+||++|+++|.||+++|+||+++||||||||||||++|++||++|.+|++
T Consensus       249 sf~~k~F~I~~~~~~~~~l~F~t~~~~~ak~i~~lc~~~H~ff~~~r~~d~~e~qqm~~~a~e~~~~~~~e~~~l~~~~~  328 (575)
T 2i1j_A          249 SFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIA  328 (575)
T ss_dssp             EEETTEEEEEESCTTSCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTCCSCCC
T ss_pred             cCCCCeEEEEEccCCcceeEEEeCCchhHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcccc
Q psy3983         242 AREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLN  316 (318)
Q Consensus       242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (318)
                      +|+.||+++.||++||.++++++++++++|.+++++|.+|++++++++++++.|++++.++++++++|+.+++|+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~  403 (575)
T 2i1j_A          329 ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNME  403 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------------
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998875

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=99.97  E-value=6.3e-32  Score=249.24  Aligned_cols=147  Identities=80%  Similarity=1.398  Sum_probs=139.7

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeec
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEK   81 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~   81 (318)
                      .++|.+++++++|+++.|+..|...|++++|+++.+|+..||++|++|++||++||.++|++|.++|||+++.||.||+.
T Consensus       148 ~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~~A~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~Lgv~~~Gi~v~~~  227 (294)
T 1ef1_A          148 KLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQ  227 (294)
T ss_dssp             CCSCHHHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEEETTEEEEEET
T ss_pred             ccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHcccCccCceEEeeecCCCCEEEEEEecCcEEEEeC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcccccc
Q psy3983          82 EDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNI  161 (318)
Q Consensus        82 ~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~l  161 (318)
                      +++                                                              +.|...|+|++|.++
T Consensus       228 ~~k--------------------------------------------------------------~~~~~~f~w~~I~~~  245 (294)
T 1ef1_A          228 NDR--------------------------------------------------------------LTPKIGFPWSEIRNI  245 (294)
T ss_dssp             TCS--------------------------------------------------------------SSCSEEEEGGGEEEE
T ss_pred             CCc--------------------------------------------------------------cccceEEEcccceEe
Confidence            766                                                              344579999999999


Q ss_pred             ccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccCC
Q psy3983         162 SFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKP  210 (318)
Q Consensus       162 sf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~  210 (318)
                      +|.+++|.|++.+++..+++|++++++.||+||++|+++|.||+++|+|
T Consensus       246 ~~~~~~f~i~~~~~~~~~~~f~~~~~~~~k~l~~l~~~~h~f~~~~r~~  294 (294)
T 1ef1_A          246 SFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMRRRKP  294 (294)
T ss_dssp             EEETTEEEEEESSSSSCCEEEECSSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             eecCCEEEEEEccCccceEEEEeCCHHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999998777889999999999999999999999999999986

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=99.97  E-value=2.8e-31  Score=247.75  Aligned_cols=147  Identities=63%  Similarity=1.120  Sum_probs=139.1

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeec
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEK   81 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~   81 (318)
                      .++|.+++++++++++.|+.+|...|++++|+++.+|++.||++|++|++||++||.++|++|.++|||+++.||.||+.
T Consensus       168 ~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~LgI~~~Gi~v~~~  247 (314)
T 1h4r_A          168 ELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDP  247 (314)
T ss_dssp             CCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEEETTCCEEEEEECSSEEEEECT
T ss_pred             hcCCHHHHhhccCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCccCceEEEeecCCCCEEEEEEeCCceEEEeC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcccccc
Q psy3983          82 EDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNI  161 (318)
Q Consensus        82 ~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~l  161 (318)
                      +++                                                              ..|...|+|++|.++
T Consensus       248 ~~k--------------------------------------------------------------~~~~~~f~w~~I~~~  265 (314)
T 1h4r_A          248 ENR--------------------------------------------------------------LTPKISFPWNEIRNI  265 (314)
T ss_dssp             TCS--------------------------------------------------------------SSCSEEEEGGGEEEE
T ss_pred             CCC--------------------------------------------------------------cccceEEecccceEE
Confidence            766                                                              233468999999999


Q ss_pred             ccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccCC
Q psy3983         162 SFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKP  210 (318)
Q Consensus       162 sf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~  210 (318)
                      +|.+++|.|++.+.+.+.++|++++++.||+||++|+++|.||+++|+|
T Consensus       266 ~~~~~~f~i~~~~~~~~~~~f~~~~~~~~k~i~~l~~~~h~f~~~~r~~  314 (314)
T 1h4r_A          266 SYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRKA  314 (314)
T ss_dssp             EEETTEEEEEESSTTSCCEEEECCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeeCCEEEEEEcCCCCceEEEEcCCHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999988877799999999999999999999999999999987

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=99.95  E-value=6e-28  Score=225.77  Aligned_cols=125  Identities=28%  Similarity=0.531  Sum_probs=114.2

Q ss_pred             hHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeecCCcccccccccccc
Q psy3983          16 PSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKK   95 (318)
Q Consensus        16 ~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~   95 (318)
                      .+.|+.+|..+|++++|+++.+|++.||++|++|++||++||.++|..|.++|||+++.||.||+.+.+           
T Consensus       168 ~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~a~~l~~yG~~~f~vk~~~~~~~~LgV~~~Gi~v~~~~~k-----------  236 (296)
T 3qij_A          168 TKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLR-----------  236 (296)
T ss_dssp             CHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTSCEEEEEECSSEEEEEETTEE-----------
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCceEEEEEcCCCCEEEEEECCCeEEEEeCCCe-----------
Confidence            368999999999999999999999999999999999999999999999999999999999999986544           


Q ss_pred             CCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCccccccccccceEEEEeCCC
Q psy3983          96 ENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDK  175 (318)
Q Consensus        96 ~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~lsf~~kkF~Ikp~dk  175 (318)
                                                                         +   ..|+|++|.++||++++|.|++.+.
T Consensus       237 ---------------------------------------------------l---~~f~w~~I~~~s~~~k~F~i~~~~~  262 (296)
T 3qij_A          237 ---------------------------------------------------I---NRFPWPKVLKISYKRSSFFIKIRPG  262 (296)
T ss_dssp             ---------------------------------------------------E---EEEEGGGEEEEEEETTEEEEEEC--
T ss_pred             ---------------------------------------------------E---EEEEhhhcCEEEecCCEEEEEEecC
Confidence                                                               2   5899999999999999999998643


Q ss_pred             ----CCCceEEEcCCccchHHHHHHhhhcccccc
Q psy3983         176 ----KAPDFVFFAPRVRVNKRILALCMGNHELYM  205 (318)
Q Consensus       176 ----k~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~  205 (318)
                          ..++++|+++++++||+||++||++|.||+
T Consensus       263 ~~~~~~~~~~f~~~~~~~~k~l~~~c~~~h~ffr  296 (296)
T 3qij_A          263 EQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR  296 (296)
T ss_dssp             -----CEEEEEECSSHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCCccceEEEECCCHHHHHHHHHHHHHhccccC
Confidence                235899999999999999999999999996

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B

Probab=99.82  E-value=4.7e-20  Score=161.32  Aligned_cols=132  Identities=20%  Similarity=0.297  Sum_probs=113.9

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCC-C----CeEEEeecCCce
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKK-G----TELWLGVDALGL   76 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~k-g----~~~WLgl~k~Gi   76 (318)
                      .++|.++++..+      +.+|..+|++++|+++.+|++.||++|++|++||++||.+++.. |    .++|||+++.||
T Consensus        70 ~~lP~~~~~~~~------~~~i~~~~~~~~g~s~~~A~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~Lgi~~~Gi  143 (206)
T 1mix_A           70 DFLPKEYIKQKG------ERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECV  143 (206)
T ss_dssp             GTSCGGGSTTCC------HHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEECCSSCSSCEEEEEEECSSEE
T ss_pred             hhCCHHHhhccc------HHHHHHHHHHccCCCHHHHHHHHHHHHHhCcccCceEEEEEEccCCCCCcCcEEEEEcccce
Confidence            478888887643      79999999999999999999999999999999999999996654 4    689999999999


Q ss_pred             eeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCc
Q psy3983          77 NIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWS  156 (318)
Q Consensus        77 ~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~  156 (318)
                      .||...++                                                              . +...|+|+
T Consensus       144 ~~~~~~~~--------------------------------------------------------------~-~l~~~~~~  160 (206)
T 1mix_A          144 MRVDEKTK--------------------------------------------------------------E-VIQEWSLT  160 (206)
T ss_dssp             EEEETTTC--------------------------------------------------------------C-EEEEEEGG
T ss_pred             EEeCCCCC--------------------------------------------------------------c-eeeeeehh
Confidence            99987655                                                              0 13589999


Q ss_pred             cccccccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccc
Q psy3983         157 EIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYM  205 (318)
Q Consensus       157 ~I~~lsf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~  205 (318)
                      +|.+++|.+++|.|++.+.....+.|.|+.   |+.|+.+|.+.|.+++
T Consensus       161 ~I~~~~~~~~~f~i~~~~~~~~~~~~~t~~---~~~i~~Li~~Yi~~~~  206 (206)
T 1mix_A          161 NIKRWAASPKSFTLDFGDYQDGYYSVQTTE---GEQIAQLIAGYIDIIL  206 (206)
T ss_dssp             GCCEEEECSSEEEEECGGGSSSCEEEECSC---HHHHHHHHHTTSCCCC
T ss_pred             HeeecccCCCEEEEEeCcccceEEEEECCc---HHHHHHHHHHHHHHhC
Confidence            999999999999999987654568888764   8999999999998763

>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}

Probab=99.79  E-value=4e-19  Score=158.90  Aligned_cols=137  Identities=20%  Similarity=0.310  Sum_probs=114.1

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCC-C----CeEEEeecCCce
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKK-G----TELWLGVDALGL   76 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~k-g----~~~WLgl~k~Gi   76 (318)
                      .++|.+++++.      |+.+|..+|++++|+++.+|++.||++|++|++||++||.+++.. |    .++|||+++.||
T Consensus        81 ~~lP~~~~~~~------~~~~I~~~h~~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~LgI~~~GI  154 (222)
T 4f7g_A           81 DFLPKEYVKQK------GERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECV  154 (222)
T ss_dssp             GTSCGGGGGGC------CHHHHHHHHHTTTTCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEE
T ss_pred             hccCHHHHhhh------hHHHHHHHHHhccCCCHHHHHHHHHHHHhhccccCcEEEEEEEecCCCCCCCCEEEEEcCCcE
Confidence            47888888764      478999999999999999999999999999999999999995543 2    589999999999


Q ss_pred             eeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCc
Q psy3983          77 NIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWS  156 (318)
Q Consensus        77 ~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~  156 (318)
                      .||....+                                                               .+...++|+
T Consensus       155 ~v~~~~tk---------------------------------------------------------------~~l~~~~~~  171 (222)
T 4f7g_A          155 MRVDEKTK---------------------------------------------------------------EVIQEWSLT  171 (222)
T ss_dssp             EEECTTTC---------------------------------------------------------------CEEEEEEGG
T ss_pred             EEEcCCCC---------------------------------------------------------------ceeEeccHH
Confidence            99986544                                                               113688999


Q ss_pred             cccccccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccCC
Q psy3983         157 EIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKP  210 (318)
Q Consensus       157 ~I~~lsf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~  210 (318)
                      +|.+++|.++.|.|+..+.....+.|.|+.   |+.|-+++.+.+..++++|+.
T Consensus       172 ~I~~~~~~~~~f~I~~~~~~~~~~~~~T~q---~~~I~~Li~~Yi~~~~~~r~~  222 (222)
T 4f7g_A          172 NIKRWAASPKSFTLDFGDYQDGYYSVQTTE---GEQIAQLIAGYIDIILKKKKS  222 (222)
T ss_dssp             GCCEEEECSSEEEEECCTTSSSCEEEECSC---HHHHHHHHHHHHHHTC-----
T ss_pred             HeeeeccCCCEEEEEECCccceEEEEECCc---HHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999977654568888875   899999999999999998863

>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A

Probab=99.64  E-value=6.6e-16  Score=148.61  Aligned_cols=140  Identities=15%  Similarity=0.291  Sum_probs=116.9

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCC----CeEEEeecCCcee
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG----TELWLGVDALGLN   77 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg----~~~WLgl~k~Gi~   77 (318)
                      .++|..++++++  ...|..+|..+|+++.|+++.+|++.||++|++|++||+.+|.+++.++    ..+|||++. ||.
T Consensus       175 ~flP~~~~~~~~--~~~~~k~I~~~~k~~~g~s~~eAk~~yL~~~~~l~~yG~~~F~v~~~~~~~~~~~l~lg~~~-GI~  251 (375)
T 2al6_A          175 RFFPKSLLDSVK--AKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEE-GIS  251 (375)
T ss_dssp             GTSCHHHHHSSC--HHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTTCCCSCEEEEEEECSSSCEEEEEEEETTT-EEE
T ss_pred             HhCCHHHHHHhC--hHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhhcccCCcEEEEEeecCCCCcceEEEEecCC-CEE
Confidence            589999999866  6789999999999999999999999999999999999999999966554    578999965 999


Q ss_pred             eeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcc
Q psy3983          78 IYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSE  157 (318)
Q Consensus        78 Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~  157 (318)
                      +|...+.                                                               .|...++|++
T Consensus       252 ~~~~~~~---------------------------------------------------------------~~~~~~~f~~  268 (375)
T 2al6_A          252 YLTDKGA---------------------------------------------------------------NPTHLADFNQ  268 (375)
T ss_dssp             EESSTTS---------------------------------------------------------------CEEEEECGGG
T ss_pred             EEeCCCC---------------------------------------------------------------ceEEEechhH
Confidence            9875332                                                               1246789999


Q ss_pred             cccccc-----cc--ceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhccccccccc
Q psy3983         158 IRNISF-----ND--RKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRR  208 (318)
Q Consensus       158 I~~lsf-----~~--kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr  208 (318)
                      |.++++     ++  ..|.|...+. ...+.|.++++..|+.|..||.|.|.++...+
T Consensus       269 I~~i~~~~~~~~~~~~~~~I~v~~~-~~~~~f~~~t~~~a~~i~~Li~gY~rl~~~~~  325 (375)
T 2al6_A          269 VQTIQYSNSEDKDRKGMLQLKIAGA-PEPLTVTAPSLTIAENMADLIDGYCRLVNGAT  325 (375)
T ss_dssp             EEEEEEECCSSSCCCEEEEEEETTC-SSCEEEEESSHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             ccEEEEEeccccCCceEEEEEECCC-CCcEEEEeCCHHHHHHHHHHHhhheEEecCCC
Confidence            999976     23  4577776543 46799999999999999999999988887443

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=99.63  E-value=7.7e-16  Score=158.87  Aligned_cols=132  Identities=11%  Similarity=0.238  Sum_probs=115.6

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHc----cCCCHHHHHHHHHHHH-hccCcccceeEEeecCCC-----CeEEEee
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEH----KGMLREDAMMEYLKIA-QDLEMYGVNYFEIKNKKG-----TELWLGV   71 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~----kG~~~~eAe~efLkva-q~Le~yGv~YFgL~d~kg-----~~~WLgl   71 (318)
                      +++|.++++.+ .+.+.|+..|..+|+++    .|+++.+|++.||++| ++|++||+.||.+++.+|     +++|||+
T Consensus       421 ~~lP~~~l~~~-~~~~~w~~~I~~~hkk~~~~~~g~s~~eAk~~yL~~a~~~lp~YG~~fF~vk~~~g~~lp~~~l~LgV  499 (655)
T 3pvl_A          421 TYIPDREITPL-KNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAV  499 (655)
T ss_dssp             HHSCGGGCCSS-SCHHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHCTTTSCEEEEEEEEESSCCSCSEEEEEE
T ss_pred             HhCCHHHHhcc-CCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhccccCcEEEEEEecCCCCCCCccEEEEE
Confidence            36899988876 37899999999999999    9999999999999998 899999999999976666     6899999


Q ss_pred             cCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCccccccccc
Q psy3983          72 DALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKI  151 (318)
Q Consensus        72 ~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~  151 (318)
                      ++.||.||+..++                                                              .  ..
T Consensus       500 n~~GV~v~d~~~k--------------------------------------------------------------~--ll  515 (655)
T 3pvl_A          500 NWTGVYFVDEQEQ--------------------------------------------------------------V--LL  515 (655)
T ss_dssp             ETTEEEEECTTCC--------------------------------------------------------------E--EE
T ss_pred             cCCceEEEcCCCc--------------------------------------------------------------e--EE
Confidence            9999999987555                                                              1  24


Q ss_pred             CccCcccccccccc------ceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhc
Q psy3983         152 GFPWSEIRNISFND------RKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGN  200 (318)
Q Consensus       152 ~f~W~~I~~lsf~~------kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~  200 (318)
                      +|+|++|.+++|++      ++|+|.+.+  ...++|+|++....+.||..+++-
T Consensus       516 ~f~~~eI~~is~~~~~~~~~~~ftl~~~~--~~~~~F~T~~a~~I~~LI~~yi~~  568 (655)
T 3pvl_A          516 ELSFPEIMAVSSSRGTKMMAPSFTLATIK--GDEYTFTSSNAEDIRDLVVTFLEG  568 (655)
T ss_dssp             EEEGGGEEEEEEECCCSSSCCEEEEEETT--SCEEEEECTTHHHHHHHHHHHHHH
T ss_pred             EechhHceEEeccCcccccccEEEEEecc--CceEEEEcCCHHHHHHHHHHHHHH
Confidence            79999999999997      699999764  357999999999999999988763

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=99.62  E-value=1.3e-15  Score=154.99  Aligned_cols=94  Identities=49%  Similarity=0.848  Sum_probs=83.8

Q ss_pred             HHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHh
Q psy3983          42 YLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQD  119 (318)
Q Consensus        42 fLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe  119 (318)
                      +-.||.+|++-..+||||  .|++|...||++++             ++.+|+++...|+.|.|+|+|||++|...+.++
T Consensus        30 l~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k-------------~i~~q~~~~~~~~~L~FRvkfy~~~~~~~l~d~   96 (575)
T 2i1j_A           30 FDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYK-------------KVMQQDVKKENPLQFKFRAKFYPEDVADELIQE   96 (575)
T ss_dssp             HHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTS-------------BGGGSCBCCCSSEEEEEEESSCCSSHHHHCCSH
T ss_pred             HHHHHHHcCCCCccceeEEEEecCcchhHhhccc-------------cHHHhcccCCCCeEEEEEEEEcCCChhhhcCCH
Confidence            345788888889999999  68889999999987             366666777889999999999999998778999


Q ss_pred             HHHHHHHHHhhhhhhc-CCCCCCCcccccc
Q psy3983         120 ITLRLFYLQVSRSAGS-RVRFPPGPNCLLT  148 (318)
Q Consensus       120 ~TRylf~LQlK~di~~-rl~C~~~~a~lL~  148 (318)
                      +||||||+|+|.||++ +++|+++.|+.|+
T Consensus        97 ~t~~LlYlQvk~dIl~G~l~c~~e~a~~LA  126 (575)
T 2i1j_A           97 ITLKLFYLQVKNAILSDEIYCPPETSVLLA  126 (575)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence            9999999999999999 8999999999887

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=99.60  E-value=2.2e-15  Score=143.82  Aligned_cols=131  Identities=20%  Similarity=0.299  Sum_probs=109.5

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCC-C----CeEEEeecCCce
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKK-G----TELWLGVDALGL   76 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~k-g----~~~WLgl~k~Gi   76 (318)
                      .++|.+++...    +  +..|...|++++|+++.+|++.||++|++|++||++||.+++.. |    .++|||+++.||
T Consensus       235 ~~lP~~~~~~~----~--e~~I~~~~~~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~vk~~~~g~~~~~~~~LgI~~~GI  308 (371)
T 3ivf_A          235 DFLPKEYVKQK----G--ERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECV  308 (371)
T ss_dssp             GTSCGGGTTSC----H--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEE
T ss_pred             ccCCHHHhCch----H--HHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCcEEEEEEEeccCCCCCccEEEEEcCCcE
Confidence            47888887642    2  78899999999999999999999999999999999999995432 2    379999999999


Q ss_pred             eeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCc
Q psy3983          77 NIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWS  156 (318)
Q Consensus        77 ~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~  156 (318)
                      .||+...+                                                               .+...|||+
T Consensus       309 ~v~~~~~k---------------------------------------------------------------~~l~~~~~~  325 (371)
T 3ivf_A          309 MRVDEKTK---------------------------------------------------------------EVIQEWSLT  325 (371)
T ss_dssp             EEEETTTC---------------------------------------------------------------CEEEEEEGG
T ss_pred             EEEcCCCC---------------------------------------------------------------ceEEeeehh
Confidence            99986554                                                               113689999


Q ss_pred             cccccccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhccccc
Q psy3983         157 EIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELY  204 (318)
Q Consensus       157 ~I~~lsf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff  204 (318)
                      +|.++++.++.|.|++.+.....+.|.|+.   +..|-+|+.+.+...
T Consensus       326 ~I~~~~~~~~~f~I~~~~~~~~~~~~~T~~---~~~I~~Li~~Yi~~i  370 (371)
T 3ivf_A          326 NIKRWAASPKSFTLDFGDYQDGYYSVQTTE---GEQIAQLIAGYIDII  370 (371)
T ss_dssp             GCCEEEEETTEEEEECGGGSSSCEEEECSC---HHHHHHHHHHHHHC-
T ss_pred             heeeeecCCCEEEEEECCccCcEEEEECCh---HHHHHHHHHHHHHHh
Confidence            999999999999999977654568888875   788999999987654

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A

Probab=99.59  E-value=1.7e-15  Score=142.46  Aligned_cols=131  Identities=21%  Similarity=0.410  Sum_probs=102.1

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHc---cCCCHH--HHHHHHHHHHhccCcccceeEEee--------cCCCCeEE
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEH---KGMLRE--DAMMEYLKIAQDLEMYGVNYFEIK--------NKKGTELW   68 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~---kG~~~~--eAe~efLkvaq~Le~yGv~YFgL~--------d~kg~~~W   68 (318)
                      +++|.++++.   +.+.|+.+|..+|+++   .|+++.  +|++.||++|++|++||++||.++        +.++.++|
T Consensus       169 ~~lP~~~~~~---~~~~~~~~I~~~h~~~~~~~g~s~~~a~a~~~yL~~~~~lp~yG~~~f~v~~~~~~~g~~~~~~~~~  245 (322)
T 4dxa_B          169 SIVPVTKLKS---KAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVY  245 (322)
T ss_dssp             TTSCTTTTTT---TGGGSHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECC-------EEEEE
T ss_pred             hhCCHHHHhc---CHHHHHHHHHHHHHhcccccCCChhHHHHHHHHHHHHhcCCCcCeEEEEEEEeccCCCCccCCCeEE
Confidence            4789988875   4567999999999999   999875  569999999999999999999995        23346899


Q ss_pred             EeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccc
Q psy3983          69 LGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLT  148 (318)
Q Consensus        69 Lgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~  148 (318)
                      ||++..||.||+..++.  +                                                          | 
T Consensus       246 LgV~~~Gv~v~~~~tk~--~----------------------------------------------------------l-  264 (322)
T 4dxa_B          246 VGVNIKGLHLLNMETKA--L----------------------------------------------------------L-  264 (322)
T ss_dssp             EEECSSEEEEEETTTCC--E----------------------------------------------------------E-
T ss_pred             EEEccCceEEEcCCCce--e----------------------------------------------------------e-
Confidence            99999999999976661  0                                                          1 


Q ss_pred             cccCccCcccc-ccccccceEEEEeCCCCCCceEEEcCCc-cchHHHHHHhhh
Q psy3983         149 PKIGFPWSEIR-NISFNDRKFIIKPIDKKAPDFVFFAPRV-RVNKRILALCMG  199 (318)
Q Consensus       149 p~~~f~W~~I~-~lsf~~kkF~Ikp~dkk~~~~~F~~~~~-~~~K~iw~lcv~  199 (318)
                        ..++|++|. ++++.++.|.|++.+.+ ..+.|.|+.. ++|+.|..+|-+
T Consensus       265 --~~~~~~~isw~~s~~~~~f~i~~~~~~-~~~~~~t~q~~~i~~li~~~~~~  314 (322)
T 4dxa_B          265 --ISLKYGCFMWQLGDTDTCFQIHSMENK-MSFIVHTKQAGLVVKLLMKLNGQ  314 (322)
T ss_dssp             --EEEETTSEEEEECSSTTEEEEEESSSC-CEEEEECTTHHHHHHHHHHHHHT
T ss_pred             --eccccceeEEeecCCCCEEEEEECCCC-ccEEEEeCcHHHHHHHHHHHHHH
Confidence              234444443 25578899999998765 3577877775 899999999865

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=99.54  E-value=1.2e-14  Score=145.61  Aligned_cols=123  Identities=24%  Similarity=0.490  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCC---CeEEEeecCCceeeeecCCccccccccccccC
Q psy3983          20 ESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG---TELWLGVDALGLNIYEKEDNLTNVMSQDVKKE   96 (318)
Q Consensus        20 e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg---~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~   96 (318)
                      +.+|...|+.++|+++.+|++.||++|++|++||++||.++++.+   ..+|||++..||.||+.+++            
T Consensus       418 ~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~F~v~~~~~~~~~~l~LgV~~~GI~v~~~~~k------------  485 (555)
T 3au4_A          418 RASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVYKRGEG------------  485 (555)
T ss_dssp             HHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEEEEESSSCSEEEEEECSSEEEEEETTCS------------
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcCceEEEEEecCCCCCceEEEEEcccceEEECCCCC------------
Confidence            899999999999999999999999999999999999999966554   68999999999999987655            


Q ss_pred             CCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCccccccc-cccceEEEEeCCC
Q psy3983          97 NPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNIS-FNDRKFIIKPIDK  175 (318)
Q Consensus        97 ~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~ls-f~~kkF~Ikp~dk  175 (318)
                                                                         .+...|+|++|.+++ +.++.|.|...++
T Consensus       486 ---------------------------------------------------~~l~~~~~~~I~~~~~~~~~~f~i~~~~~  514 (555)
T 3au4_A          486 ---------------------------------------------------RPLEVFQYEHILSFGAPLANTYKIVVDER  514 (555)
T ss_dssp             ---------------------------------------------------SCSEEEEGGGEEEEEEEETTEEEEEETTE
T ss_pred             ---------------------------------------------------eeEEEEEhhheeeecCCCCCEEEEEECCc
Confidence                                                               113589999999998 4779999998753


Q ss_pred             CCCceEEEcCCccchHHHHHHhhhcccccccccCCC
Q psy3983         176 KAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPD  211 (318)
Q Consensus       176 k~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d  211 (318)
                         .+.|.|+.   +..|-.|+.+.+..++.+|...
T Consensus       515 ---~l~f~T~q---a~~i~~LI~~Yi~~l~~~r~~~  544 (555)
T 3au4_A          515 ---ELLFETSE---VVDVAKLMKAYISMIVKKRYST  544 (555)
T ss_dssp             ---EEEEECTT---HHHHHHHHHHHHHHHHHHHCC-
T ss_pred             ---EEEEECCC---HHHHHHHHHHHHHHHHHhhhcc
Confidence               58999865   6678888888888887766543

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=99.52  E-value=8.7e-15  Score=134.76  Aligned_cols=95  Identities=45%  Similarity=0.800  Sum_probs=84.1

Q ss_pred             HHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHh
Q psy3983          42 YLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQD  119 (318)
Q Consensus        42 fLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe  119 (318)
                      +-.+|++|++-..+||||  .+++|...||++++             ++.+|+++...|+.|.|+|+|||+++...+.++
T Consensus        27 ~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~-------------~l~~q~~~~~~~~~l~fr~kf~~~~~~~~l~~~   93 (294)
T 1ef1_A           27 FDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNK-------------KVTAQDVRKESPLLFKFRAKFYPEDVSEELIQD   93 (294)
T ss_dssp             HHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSS-------------BGGGSCBCCCSSEEEEEEESSCCSCHHHHCCSH
T ss_pred             HHHHHHHcCCCCcceeEEEEECCCCceeeccccc-------------CHHhhccCCCCCEEEEEEEEEECCChHHhhccH
Confidence            445788889999999999  68889999999987             356666667789999999999999998778999


Q ss_pred             HHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983         120 ITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus       120 ~TRylf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      +||||||+|+|.|+++ +++|+.+.|+.|++
T Consensus        94 ~~~~l~y~Q~~~dil~g~~~~~~e~a~~Laa  124 (294)
T 1ef1_A           94 ITQRLFFLQVKEGILNDDIYCPPETAVLLAS  124 (294)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcccCCHHHHHHHHH
Confidence            9999999999999999 89999999999883

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=99.47  E-value=2e-14  Score=133.93  Aligned_cols=95  Identities=37%  Similarity=0.683  Sum_probs=82.9

Q ss_pred             HHHHHhccCcccceeEEe-ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhH
Q psy3983          42 YLKIAQDLEMYGVNYFEI-KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDI  120 (318)
Q Consensus        42 fLkvaq~Le~yGv~YFgL-~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~  120 (318)
                      +-.||++|++-+.+|||| ...++...||++++             ++.+|.++...|+.|.|+|+|||+++...+.+++
T Consensus        48 ~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~-------------~i~~q~~~~~~~~~l~fr~kf~~~~~~~~l~~~~  114 (314)
T 1h4r_A           48 FDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDK-------------KVLDHDVSKEEPVTFHFLAKFYPENAEEELVQEI  114 (314)
T ss_dssp             HHHHHHHHTCCCGGGEEEEEEETTEEEECCTTS-------------BGGGSSCCCSSSEEEEEEESSCCSSHHHHCCSHH
T ss_pred             HHHHHHHhCCCCCccceEEEEeCCcCeeCCCcc-------------CHHHcCCCCCCCEEEEEEEEEecCCchhhhcCHH
Confidence            345788899999999999 44678889999887             3566666667899999999999999987799999


Q ss_pred             HHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983         121 TLRLFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus       121 TRylf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      ||||||+|+|.|+++ +++|++++|+.|++
T Consensus       115 ~~~l~y~Q~~~dil~g~~~~~~e~a~~Laa  144 (314)
T 1h4r_A          115 TQHLFFLQVKKQILDEKIYCPPEASVLLAS  144 (314)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccCCHHHHHHHHH
Confidence            999999999999999 89999999999883

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=99.46  E-value=1.7e-14  Score=134.81  Aligned_cols=93  Identities=24%  Similarity=0.433  Sum_probs=78.9

Q ss_pred             HHHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHH
Q psy3983          41 EYLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQ  118 (318)
Q Consensus        41 efLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~q  118 (318)
                      -+-.||++|++-..+||||  .|.++...||+++++             +.+|.  ...|+.|.|+|||||++|. .+.+
T Consensus        43 l~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~-------------i~~q~--~~~~~~l~frvkfy~~~~~-~l~~  106 (296)
T 3qij_A           43 LLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKE-------------IKKQV--RGVPWNFTFNVKFYPPDPA-QLTE  106 (296)
T ss_dssp             HHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSB-------------HHHHC-----CCEEEEEESSCCSCGG-GSSC
T ss_pred             HHHHHHHHcCCCCcceeEEEEEcCCCccchhccchh-------------HHHhc--CCCCcEEEEEEEEeCCCch-hccC
Confidence            3456888899999999999  677788999999873             44442  3468999999999999998 6999


Q ss_pred             hHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983         119 DITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus       119 e~TRylf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      ++||||||+|+|+||++ +++|++++|++|++
T Consensus       107 ~~tr~l~ylQ~~~dil~G~~~c~~e~a~~LAA  138 (296)
T 3qij_A          107 DITRYYLCLQLRQDIVAGRLPCSFATLALLGS  138 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            99999999999999999 89999999999983

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.16  E-value=1.9e-11  Score=124.56  Aligned_cols=101  Identities=16%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             HHHHHHHhccCcccceeEEe--ecC-CCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHH
Q psy3983          40 MEYLKIAQDLEMYGVNYFEI--KNK-KGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEI  116 (318)
Q Consensus        40 ~efLkvaq~Le~yGv~YFgL--~d~-kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL  116 (318)
                      --+..+|.+|+....+||||  .+. ++...||.++++   |.+..++    . .++...+++.+.|||+|||+|+.+.+
T Consensus        36 ~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~---~~~~~~~----~-~~~~~~~~~~~~~rvrf~p~~~~~l~  107 (656)
T 2j0j_A           36 GIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMG---VSNVREK----F-ELAHPPEEWKYELRIRYLPKGFLNQF  107 (656)
T ss_dssp             HHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSB---HHHHHHH----H-TTTSCTTSEEEEEEECCCCTTHHHHH
T ss_pred             HHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCc---HHHHHhh----h-cccCCCcceEEEEEEEEcCCCHHHHH
Confidence            33556888999999999999  455 688999999984   1110000    0 12344578999999999999999877


Q ss_pred             HHhH-HHHHHHHHhhhhhhc-CCC-CCCCcccccc
Q psy3983         117 IQDI-TLRLFYLQVSRSAGS-RVR-FPPGPNCLLT  148 (318)
Q Consensus       117 ~qe~-TRylf~LQlK~di~~-rl~-C~~~~a~lL~  148 (318)
                      .++. |+|+||+|+|.|+++ +++ |+.+.|..|+
T Consensus       108 ~~d~~~~~ylf~Q~r~D~~~~~~~~~~~~~al~La  142 (656)
T 2j0j_A          108 TEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLG  142 (656)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHhcccccccHhHHHHHH
Confidence            7766 899999999999999 775 8888887665

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=99.14  E-value=1.5e-11  Score=117.39  Aligned_cols=93  Identities=17%  Similarity=0.265  Sum_probs=72.6

Q ss_pred             HHHHHhccCcccceeEEe--ec----CCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHH
Q psy3983          42 YLKIAQDLEMYGVNYFEI--KN----KKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEE  115 (318)
Q Consensus        42 fLkvaq~Le~yGv~YFgL--~d----~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~e  115 (318)
                      +-.+|.+|++-..+||||  .+    +++...||+++++             +.+|+.  ..++.|.|++||||+|+...
T Consensus       112 ~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~-------------l~~q~~--~~~~~l~frvKf~~~d~~~~  176 (371)
T 3ivf_A          112 LMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRT-------------LREQGV--EEHETLLLRRKFFYSDQNVD  176 (371)
T ss_dssp             HHHHHHHTTCSCGGGEEEECCC----------CCCTTSB-------------TGGGTC--CTTCEEEEEECCCCBCSSCB
T ss_pred             HHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCch-------------hHhhCC--CCCceEEEEEEEecCCcccc
Confidence            456889999999999999  33    2567899988763             445542  34678999999999887765


Q ss_pred             HHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983         116 IIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus       116 L~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      +.++.||||||+|+|.|+++ +++|++++|+.|++
T Consensus       177 ~~D~~~~~l~y~Q~~~dil~G~~~c~~e~a~~LAA  211 (371)
T 3ivf_A          177 SRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAG  211 (371)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhHHHhCceeecCHHHHHHHHH
Confidence            78999999999999999999 89999999999983

>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}

Probab=99.07  E-value=1.3e-09  Score=106.46  Aligned_cols=135  Identities=10%  Similarity=0.172  Sum_probs=103.4

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCC--CCeEEEeecCCceeee
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKK--GTELWLGVDALGLNIY   79 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~k--g~~~WLgl~k~Gi~Iy   79 (318)
                      +++|..+++..  +...|...|...|+.+.|+++.+|.+.||+.+++|++||+.+|.++...  +.+.||.+...||.+.
T Consensus       195 ~flP~~l~~~i--k~k~~rk~I~~~~kk~~~ls~~eakl~YL~~l~~Lp~yG~e~F~vk~~s~~~~~~~L~Vg~~GIs~~  272 (392)
T 4eku_A          195 LFFPKQMQENL--KPKQFRKMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETYRCELIQGWNITVDLVIGPKGIRQL  272 (392)
T ss_dssp             GTSCHHHHHHS--CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTSSCCSCEEEEEEEESSSCCCEEEEEETTEEEEE
T ss_pred             HhcCHHHHhhc--CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhccCcEEEEEEeccCCcceeEEEEcCCcEEEE
Confidence            47899999875  4778999999999999999999999999999999999999999995433  3456666666699875


Q ss_pred             ecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcccc
Q psy3983          80 EKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIR  159 (318)
Q Consensus        80 ~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~  159 (318)
                      ....+                                                               .|...++|++|.
T Consensus       273 ~~k~~---------------------------------------------------------------~~~~~~~f~~I~  289 (392)
T 4eku_A          273 TSQDA---------------------------------------------------------------KPTCLAEFKQIR  289 (392)
T ss_dssp             CSSCS---------------------------------------------------------------CCEEEECGGGBC
T ss_pred             CCCCC---------------------------------------------------------------ceeEEechHHce
Confidence            43222                                                               013567899999


Q ss_pred             cccccc---ce--EEEEeCCCCCCceEEEcCCccchHHHHHHhhhccc
Q psy3983         160 NISFND---RK--FIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE  202 (318)
Q Consensus       160 ~lsf~~---kk--F~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~  202 (318)
                      +|+...   ++  |.|...+. ...+.|.+++...|+.++.|+.|...
T Consensus       290 ~Is~~~~s~~~~~v~I~~~~~-~~~l~~~~~s~~~A~~~~~LidGY~R  336 (392)
T 4eku_A          290 SIRCLPLEEGQAVLQLGIEGA-PQALSIKTSSLAEAENMADLIDGYCR  336 (392)
T ss_dssp             CCCEEEETTTEEEEEECBTTC-SSCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeccCCceEEEEEECCC-CcceEEEeCCHHHHHHHHHHHHHHHh
Confidence            997643   34  44544443 23689999999999999998876433

>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A

Probab=98.99  E-value=2.6e-10  Score=109.68  Aligned_cols=100  Identities=18%  Similarity=0.250  Sum_probs=76.4

Q ss_pred             HHHHHHHHhccCcccceeEEe--ec-CCCCeEEEeecCCceeeeecCCccccccccc--cccCCCeeEEEEEeecCCCch
Q psy3983          39 MMEYLKIAQDLEMYGVNYFEI--KN-KKGTELWLGVDALGLNIYEKEDNLTNVMSQD--VKKENPLQFKFRAKFYPEDVV  113 (318)
Q Consensus        39 e~efLkvaq~Le~yGv~YFgL--~d-~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~--i~~~~p~~~~f~vkfyp~d~~  113 (318)
                      .--+..+|++|++-..+||||  .+ .++...||.+++.   |.       .+.++.  .....++.|.|||+|||+++.
T Consensus        35 ~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~---l~-------~~~~k~~~~~~~~~~~l~fRvrF~~~~~~  104 (375)
T 2al6_A           35 RGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMG---VS-------NVREKFELAHPPEEWKYELRIRYLPKGFL  104 (375)
T ss_dssp             HHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSB---HH-------HHHHHHHTTSCGGGEEEEEEECCCCTTHH
T ss_pred             HHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccc---hh-------hhhhhhhcccCCCceEEEEEEEEecCCHH
Confidence            334567899999999999999  34 3567899999874   11       111110  012357999999999999998


Q ss_pred             HHHHHh-HHHHHHHHHhhhhhhc-C-CCCCCCcccccc
Q psy3983         114 EEIIQD-ITLRLFYLQVSRSAGS-R-VRFPPGPNCLLT  148 (318)
Q Consensus       114 ~eL~qe-~TRylf~LQlK~di~~-r-l~C~~~~a~lL~  148 (318)
                      +...++ .|+++||+|+|.|+++ + ..|+.++|+.|+
T Consensus       105 ~l~~~D~~t~~~~y~Q~r~Dil~g~~~~~~~e~al~LA  142 (375)
T 2al6_A          105 NQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLG  142 (375)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred             HhhhcCHHHHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence            766555 7999999999999999 6 579999999987

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=98.58  E-value=3.7e-07  Score=93.03  Aligned_cols=139  Identities=14%  Similarity=0.312  Sum_probs=107.1

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCC----CeEEEeecCCcee
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG----TELWLGVDALGLN   77 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg----~~~WLgl~k~Gi~   77 (318)
                      .++|..+++.++  ...+..+|..+|+.+.|+++.++++.||+.++.++.||++.|.+.+.+|    ..+.||++. ||.
T Consensus       175 ~fiP~~~~~~~~--~~~~~k~i~~~~k~~~~~~~~~~~lk~l~~l~~~~~yg~e~f~~~~~~g~~~~~~l~vg~~~-GI~  251 (656)
T 2j0j_A          175 RFFPKSLLDSVK--AKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEE-GIS  251 (656)
T ss_dssp             GTSCHHHHHHSC--HHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHGGGCCTTSEEEEEEEESSSEEEEEEEEETTT-EEE
T ss_pred             HhCCHHHHHHhh--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccccCceEEeeccCCCCcccEEEEECCCC-CeE
Confidence            478999999866  6678999999999999999999999999999999999999999988777    567777755 888


Q ss_pred             eeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcc
Q psy3983          78 IYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSE  157 (318)
Q Consensus        78 Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~  157 (318)
                      .......                                                               .|...+.|++
T Consensus       252 ~~~~~~~---------------------------------------------------------------~~~~~~~f~~  268 (656)
T 2j0j_A          252 YLTDKGA---------------------------------------------------------------NPTHLADFNQ  268 (656)
T ss_dssp             ECCSSSS---------------------------------------------------------------CCEEEECGGG
T ss_pred             EECCCCC---------------------------------------------------------------Cceecccccc
Confidence            5432111                                                               1234557899


Q ss_pred             ccccccc----c---ceEEEEeCCCCCCceEEEcCCccchHHHHHHhhh--------cccccccc
Q psy3983         158 IRNISFN----D---RKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMG--------NHELYMRR  207 (318)
Q Consensus       158 I~~lsf~----~---kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~--------~H~Ff~~r  207 (318)
                      |.+|++.    +   +.+.+... .....+.+.+++...+..+..+|-|        +|.|+.+.
T Consensus       269 I~~I~~~~~~~~~~k~~~~~~~~-~~~~~l~i~~~s~~~ae~~a~LidGy~rL~~~~~~~~~~~~  332 (656)
T 2j0j_A          269 VQTIQYSNSEDKDRKGMLQLKIA-GAPEPLTVTAPSLTIAENMADLIDGYCRLVNGATQSFIIRP  332 (656)
T ss_dssp             EEEBCEEECSSSSCCEEEEEEES-SCSSCEEEEESSHHHHHHHHHHHHHHHHHHSCCCSCCBCCC
T ss_pred             eeEEEEeeccccCCcceEEEEec-cCCcceEEECCCchhhHHHHHhhcceeeeeccCccceeecc
Confidence            9999776    2   23344333 3344689999999999999999877        56666543

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A

Probab=98.51  E-value=7.5e-09  Score=97.20  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=46.2

Q ss_pred             cccccCCCeeEEEEEee-cCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983          91 QDVKKENPLQFKFRAKF-YPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus        91 q~i~~~~p~~~~f~vkf-yp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      +.+..++| .+.|+.+| ||+++...+.+++||||||+|+|.||++ +++|+.++|+.|++
T Consensus        83 ~~~~~~~p-~l~~rr~~f~~~~~~~~~~d~~t~~l~y~Q~~~dil~G~~~c~~e~a~~LAA  142 (322)
T 4dxa_B           83 LDPQRETP-QLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLAS  142 (322)
T ss_dssp             CCCCCCCC-EEEEEECTTCCHHHHTTCCCHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred             CCCCCCce-EEEEEEeecccccccccccCHHHHHHHHHHHHHHHHCCcccCCHHHHHHHHH
Confidence            33344455 56666665 5657766688999999999999999999 89999999999984

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=98.45  E-value=6.5e-08  Score=96.95  Aligned_cols=101  Identities=10%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             HHhccCccc-ceeEEe-ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHH
Q psy3983          45 IAQDLEMYG-VNYFEI-KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITL  122 (318)
Q Consensus        45 vaq~Le~yG-v~YFgL-~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TR  122 (318)
                      +|.+|++-. .+|||| .+.++...||..+..   |++...+.....+.+.....++.|.|+++||++.. ..+.+++|+
T Consensus       246 v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~---i~D~~~~we~~~~~~~~~~~~~~l~fR~~ff~~~~-~~~~d~~~~  321 (555)
T 3au4_A          246 LIRGLAMEDSRNMFALFEYNGHVDKAIESRTV---VADVLAKFEKLAATSEVGDLPWKFYFKLYCFLDTD-NVPKDSVEF  321 (555)
T ss_dssp             HHHHTTCTTCCSEEEEEEESSSCEEECCTTSB---HHHHHHHHHHHTTSCCTTCCCCEEEEEEEECSCCT-TCCTTSHHH
T ss_pred             HHHHcCCCCCCCceEEEEEeCCeeEecCCCCc---hhHHHHHHHHHhhccCCCCCceEEEEEEEeecCcc-cCCcchHHH
Confidence            888999986 789999 545566778866542   22100000000000111245899999999996543 335677999


Q ss_pred             HHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983         123 RLFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus       123 ylf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      ||||+|++.|+++ +++|+.++|+.|++
T Consensus       322 ~lly~Q~~~dil~G~~~~~~e~a~~LAA  349 (555)
T 3au4_A          322 AFMFEQAHEAVIHGHHPAPEENLQVLAA  349 (555)
T ss_dssp             HHHHHHHHHHHHTTCSCCCHHHHHHHHH
T ss_pred             HhhHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence            9999999999999 89999999999984

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.45  E-value=1.4e-07  Score=97.51  Aligned_cols=103  Identities=13%  Similarity=0.108  Sum_probs=68.1

Q ss_pred             HHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCcccccc-ccc-cccCCCeeEEEEEeecCCCchHHHHH
Q psy3983          43 LKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVM-SQD-VKKENPLQFKFRAKFYPEDVVEEIIQ  118 (318)
Q Consensus        43 Lkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~-~q~-i~~~~p~~~~f~vkfyp~d~~~eL~q  118 (318)
                      -.+|.+|++-..+||||  .+.++...|+..+.   .|.....+.-... ++. .+...|+.|.|+++||+|++. .+.+
T Consensus       291 ~~V~~~LgL~e~~~FgL~~~~~dk~~sll~~~e---~vlD~l~~~E~~~k~~~~~~~~~~~~L~FRvkff~p~~~-~~~d  366 (655)
T 3pvl_A          291 NALADKISLKDRFGFSLYIALFDKVSSLGSGSD---HVMDAISQCEQYAKEQGAQERNAPWRLFFRKEVFTPWHN-PSED  366 (655)
T ss_dssp             HHHHHHTTCSSCTTEEEEEEETTEEEEEETSSC---BHHHHHHHHHHHHHTTTCCGGGCCCEEEEEECCCCTTCC-GGGC
T ss_pred             HHHHHHcCCcccccceeEEecCCceeecccCce---EeecHHHHHHHHHHhhccccCCCCeEEEEEEEEecCCcc-cccC
Confidence            44899999999999999  33333333431111   1111000000000 000 123468999999999988665 3789


Q ss_pred             hHHHHHHHHHhhhhhhc-CCCCCCC-ccccccc
Q psy3983         119 DITLRLFYLQVSRSAGS-RVRFPPG-PNCLLTP  149 (318)
Q Consensus       119 e~TRylf~LQlK~di~~-rl~C~~~-~a~lL~p  149 (318)
                      ++|+||||+|++.||++ +++|+.+ +++.|++
T Consensus       367 ~it~~LlYlQ~k~dIl~Grlpc~~E~~a~~LAA  399 (655)
T 3pvl_A          367 NVATNLIYQQVVRGVKFGEYRCEKEDDLAELAS  399 (655)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccCccCCChHHHHHHHHH
Confidence            99999999999999999 8999986 8998883

>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}

Probab=98.35  E-value=3.3e-07  Score=89.41  Aligned_cols=87  Identities=20%  Similarity=0.280  Sum_probs=64.4

Q ss_pred             ccceeEEe--e-cCCCCeEEEeecCCceeeeecCCcccccccccccc--CCCeeEEEEEeecCCCchHHHHHhHHHH-HH
Q psy3983          52 YGVNYFEI--K-NKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKK--ENPLQFKFRAKFYPEDVVEEIIQDITLR-LF  125 (318)
Q Consensus        52 yGv~YFgL--~-d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~--~~p~~~~f~vkfyp~d~~~eL~qe~TRy-lf  125 (318)
                      -..+||||  . .+.+...||.++.+          +..|....-.+  ..++.+.|||+|||+|+...+.++.|++ +|
T Consensus        68 ~~~~~FgL~~~~~~~~~~~wL~~~~~----------l~~v~~k~~~~~~~~~~~~~fRvrF~p~d~~~l~~~D~~~~~yl  137 (392)
T 4eku_A           68 RLAECYGLRLKHMKSDEIHWLHPQMT----------VGEVQDKYECLHVEAEWRYDLQIRYLPEDFMESLKEDRTTLLYF  137 (392)
T ss_dssp             CCGGGEEEEEEESSSCCEEEECTTSB----------HHHHHHHSTTTSCGGGEEEEEEECSCCTTTHHHHTTCHHHHHHH
T ss_pred             CccceEEEEEEECCCCceEECCCCCc----------HHHHHhhhhhccCCCceEEEEEEEEEcCCHHHhhhcChHHHHHH
Confidence            46778888  3 34577899999885          11122111111  2468999999999999988777778886 78


Q ss_pred             HHHhhhhhhc-C-CCCCCCcccccc
Q psy3983         126 YLQVSRSAGS-R-VRFPPGPNCLLT  148 (318)
Q Consensus       126 ~LQlK~di~~-r-l~C~~~~a~lL~  148 (318)
                      |+|+|.|+++ . ..|+.+.|..|+
T Consensus       138 Y~Q~r~D~l~g~~~~~~~e~al~LA  162 (392)
T 4eku_A          138 YQQLRNDYMQRYASKVSEGMALQLG  162 (392)
T ss_dssp             HHHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            9999999999 4 578888888887

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B

Probab=98.23  E-value=1.7e-07  Score=81.56  Aligned_cols=45  Identities=18%  Similarity=0.250  Sum_probs=42.0

Q ss_pred             EeecCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983         105 AKFYPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus       105 vkfyp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      |||||+|+...+.++.||||||+|+|.|+++ +++|++++|+.|++
T Consensus         1 vkf~~~d~~~~~~d~~~~~l~y~Q~~~dil~g~~~~~~~~a~~Laa   46 (206)
T 1mix_A            1 MKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAG   46 (206)
T ss_dssp             CCCCCCHHHHHTSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred             CcccCCCCCCCcCCHHHHHHHHHHHHHHHHCCccccCHHHHHHHHH
Confidence            7999999987788889999999999999999 89999999999983

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.96  E-value=0.27  Score=39.44  Aligned_cols=89  Identities=12%  Similarity=0.129  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEE  294 (318)
Q Consensus       215 vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (318)
                      +|.||.++..-..+...-..++........++|.+...|..++.+++++..++...|..+......-+..+..++.+-+-
T Consensus        11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~   90 (101)
T 3u1c_A           11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVAS   90 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777776665555555556677777778888999999999999999999999999988877776666666666666666


Q ss_pred             HHHHHHHHH
Q psy3983         295 LEARQTELQ  303 (318)
Q Consensus       295 ~~~~~~~~~  303 (318)
                      |..+..-++
T Consensus        91 L~RriqllE   99 (101)
T 3u1c_A           91 LNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            666554443

>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}

Probab=95.92  E-value=0.0018  Score=57.35  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=28.5

Q ss_pred             cCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983         108 YPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus       108 yp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      ||+||.       +++|||+|+|.|+++ +++|++++|+.|++
T Consensus        22 ~~~Dp~-------~l~l~ylQ~~~dil~G~~~~~~e~a~~LAa   57 (222)
T 4f7g_A           22 SSRDPV-------QLNLLYVQARDDILNGSHPVSFDKACEFAG   57 (222)
T ss_dssp             ----CC-------HHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred             CCCCHH-------HHHHHHHHHHHHHhCCcccCCHHHHHHHHH
Confidence            578885       688999999999999 89999999999983

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.75  E-value=0.96  Score=35.95  Aligned_cols=87  Identities=21%  Similarity=0.225  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEE  294 (318)
Q Consensus       215 vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (318)
                      .|.||.++..-..+...-..++........+++.+...+..++..++++...+...|..+......-+..+..++.+-+.
T Consensus        11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas   90 (101)
T 3u59_A           11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS   90 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666555545444445566666667778888888889999999998888888877776666655555556666666


Q ss_pred             HHHHHHH
Q psy3983         295 LEARQTE  301 (318)
Q Consensus       295 ~~~~~~~  301 (318)
                      |..+..-
T Consensus        91 LnRriql   97 (101)
T 3u59_A           91 LNRRIQL   97 (101)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.01  E-value=1.1  Score=48.87  Aligned_cols=42  Identities=24%  Similarity=0.410  Sum_probs=19.0

Q ss_pred             HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ  275 (318)
Q Consensus       234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  275 (318)
                      .+|..+...-+..+.+..+++.++..+++++...++++.+..
T Consensus       963 ~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A          963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334333333333444444445555555555555444444333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=90.25  E-value=4.3  Score=30.92  Aligned_cols=61  Identities=20%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ  275 (318)
Q Consensus       215 vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  275 (318)
                      +|+|+..+..-..+-..-..++.........++.+...|..++.+++++..++.+.|..++
T Consensus         8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~   68 (81)
T 1ic2_A            8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ   68 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455554444333333333444444444555555555555666666655555555554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.44  E-value=3.8  Score=40.23  Aligned_cols=37  Identities=11%  Similarity=0.107  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         259 QLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL  295 (318)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (318)
                      ++++..+....++.+.++.+....++.+.++.+.+++
T Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  549 (597)
T 3oja_B          513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIAL  549 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHH
Confidence            3333333333333333333333333333333333333

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=88.07  E-value=6.1  Score=40.45  Aligned_cols=17  Identities=12%  Similarity=0.296  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHhhchhhh
Q psy3983         296 EARQTELQLELQPIRNQ  312 (318)
Q Consensus       296 ~~~~~~~~~~~~~~~~~  312 (318)
                      ..+...++.+++.|+..
T Consensus       566 ~~~~~~~~~ei~~l~~~  582 (592)
T 1f5n_A          566 QKESRIMKNEIQDLQTK  582 (592)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            34445556666666554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=86.00  E-value=5.4  Score=48.41  Aligned_cols=54  Identities=19%  Similarity=0.174  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983         254 VERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ  307 (318)
Q Consensus       254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (318)
                      .++|.+++.+...+++.|.+.++++.+++++++.++++-+...++...++.+++
T Consensus      2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A         2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346667777777777777777777777777777776665555555544444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=85.89  E-value=7.1  Score=32.88  Aligned_cols=56  Identities=16%  Similarity=0.240  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983         251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL  306 (318)
Q Consensus       251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (318)
                      +.|+..+..+..|+.....+|...+..+..+..++..++++...|+.+...++.++
T Consensus        78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A           78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444544444444454454444455444544444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.97  E-value=30  Score=33.85  Aligned_cols=40  Identities=18%  Similarity=0.224  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3983         269 QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP  308 (318)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (318)
                      +.+...++...+++.+.+..++...++.++.+.+.++++.
T Consensus       537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~  576 (597)
T 3oja_B          537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ  576 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444444444444444443333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=80.58  E-value=29  Score=30.39  Aligned_cols=61  Identities=18%  Similarity=0.256  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983         236 LQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE  296 (318)
Q Consensus       236 l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (318)
                      |..|+..|-.++....+++.|+..++.++......+..+...-+.|.+.+..++.++..++
T Consensus        78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4455556666666667777777777777777777776666666666666666666665555

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=80.55  E-value=29  Score=30.39  Aligned_cols=62  Identities=19%  Similarity=0.249  Sum_probs=38.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983         246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ  307 (318)
Q Consensus       246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (318)
                      .+..+..|++.+..++.....-..+.....+++.+|+.....++.+.+.+..+...+..++.
T Consensus        60 L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r  121 (168)
T 3o0z_A           60 LENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERK  121 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456677777777777766666666666666666666666666666655555544444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d1ef1a2	99	b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens)	2e-23
d1h4ra2	99	b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens)	9e-22
d1gg3a2	92	b.55.1.5 (A:188-279) Erythroid membrane protein 4.	1e-12
d1gg3a2	92	b.55.1.5 (A:188-279) Erythroid membrane protein 4.	7e-09
d1h4ra1	111	a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens)	3e-11
d1ef1a1	111	a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [	6e-11
d1gg3a1	106	a.11.2.1 (A:82-187) Erythroid membrane protein 4.1	2e-10
d1mixa1	114	a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus	4e-09
d2al6a1	123	a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chic	1e-07
d1ef1a3	84	d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [Ta	1e-06
d1h4ra3	84	d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [	2e-05

>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (223), Expect = 2e-23
 Identities = 60/67 (89%), Positives = 65/67 (97%)

Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
           N  LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHEL
Sbjct: 33  NDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHEL 92

Query: 204 YMRRRKP 210
           YMRRRKP
Sbjct: 93  YMRRRKP 99

>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (213), Expect = 9e-22
 Identities = 41/66 (62%), Positives = 53/66 (80%)

Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
              LTPKI FPW+EIRNIS++D++F IKP+DKK   F F + ++RVNK IL LC+GNH+L
Sbjct: 33  ENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDL 92

Query: 204 YMRRRK 209
           +MRRRK
Sbjct: 93  FMRRRK 98

>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 1e-12
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 153 FPWSEIRNISFNDRKFIIKPIDK----KAPDFVFFAPRVRVNKRILALCMGNHELY 204
           FPW ++  IS+    F IK              F  P  R  K++  +C+ +H  +
Sbjct: 36  FPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFF 91

>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 7e-09
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 53  GVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPED 111
           GV+  + K+ +G ++ LGV + GL +Y+ +  +       V K +  +  F  K  P +
Sbjct: 1   GVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGE 59

>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 3e-11
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDL 49
           P RV++ ++M+P  WE  IT W+ EH+G  R++A MEYLKIAQDL
Sbjct: 67  PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDL 111

>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 6e-11
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query: 5   PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDL 49
           P RV++QHK++  +WE  I  W +EH+GMLREDA++EYLKIAQDL
Sbjct: 67  PQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDL 111

>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 6   LRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMY 52
           +           E E  +    K ++ M    A +E+L+ A+ L MY
Sbjct: 60  VSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY 106

>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 114

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.4 bits (123), Expect = 4e-09
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 12  HKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMY 52
            +    + E  I    K    M   +A + Y+K+A+ L+ Y
Sbjct: 74  KEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTY 114

>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 123

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Focal adhesion kinase 1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 4/42 (9%), Positives = 18/42 (42%)

Query: 11  QHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMY 52
              +        I   +++   + RE++++++ +I   +  +
Sbjct: 82  LDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRF 123

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 15/69 (21%)

Query: 44  KIAQDLEMYGVNYF--EIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQF 101
           ++ + + +  V +F  + ++ KG   WL                  V +QDV+KE+PL F
Sbjct: 29  QVVKTIGLREVWFFGLQYQDTKGFSTWL-------------KLNKKVTAQDVRKESPLLF 75

Query: 102 KFRAKFYPE 110
           KFRAKFYPE
Sbjct: 76  KFRAKFYPE 84

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 83  DNLTNVMSQDVKKENPLQFKFRAKFYPE 110
                V+  DV KE P+ F F AKFYPE
Sbjct: 57  KMDKKVLDHDVSKEEPVTFHFLAKFYPE 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1ef1a2	99	Moesin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1h4ra2	99	Merlin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1gg3a2	92	Erythroid membrane protein 4.1R {Human (Homo sapie	99.87
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1gg3a3	81	Erythroid membrane protein 4.1R {Human (Homo sapie	98.69
d1ef1a1	111	Moesin {Human (Homo sapiens) [TaxId: 9606]}	98.37
d1gg3a1	106	Erythroid membrane protein 4.1R {Human (Homo sapie	98.37
d1ef1a1	111	Moesin {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1mixa1	114	Talin {Chicken (Gallus gallus) [TaxId: 9031]}	98.33
d1h4ra1	111	Merlin {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2al6a1	123	Focal adhesion kinase 1 {Chicken (Gallus gallus) [	98.28
d1h4ra1	111	Merlin {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1gg3a1	106	Erythroid membrane protein 4.1R {Human (Homo sapie	97.67
d1mixa1	114	Talin {Chicken (Gallus gallus) [TaxId: 9031]}	97.41
d1mixa2	92	Talin {Chicken (Gallus gallus) [TaxId: 9031]}	96.22
d2al6a1	123	Focal adhesion kinase 1 {Chicken (Gallus gallus) [	94.94

>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-29  Score=199.54  Aligned_cols=99  Identities=90%  Similarity=1.550  Sum_probs=92.7

Q ss_pred             CcccceeEEeecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHh
Q psy3983          50 EMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV  129 (318)
Q Consensus        50 e~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQl  129 (318)
                      |+||++||.++|.+|.++|||+++.||.||+.+++                                             
T Consensus         1 e~YGv~~~~vkd~~~~~~~LGi~~~GI~iy~~~~~---------------------------------------------   35 (99)
T d1ef1a2           1 EMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDR---------------------------------------------   35 (99)
T ss_dssp             TTTTCEEEEEECTTCCEEEEEEETTEEEEEETTCS---------------------------------------------
T ss_pred             CCCCcEeEEEeCCCCCcEEEEEecCCeEEEeCCCe---------------------------------------------
Confidence            69999999999999999999999999999997766                                             


Q ss_pred             hhhhhcCCCCCCCcccccccccCccCccccccccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccC
Q psy3983         130 SRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRK  209 (318)
Q Consensus       130 K~di~~rl~C~~~~a~lL~p~~~f~W~~I~~lsf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~  209 (318)
                                       ..|...|+|++|.+|||++++|+|++.++...+++|+++|+++||+||++|+++|.|||++|+
T Consensus        36 -----------------~~~~~~f~W~~I~klsf~~k~f~I~~~~~~~~~~~f~~~s~~~~k~lw~~c~e~H~Ff~~~r~   98 (99)
T d1ef1a2          36 -----------------LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMRRRK   98 (99)
T ss_dssp             -----------------SSCSEEEEGGGEEEEEEETTEEEEEESSSSSCCEEEECSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -----------------eccceEEechhEEEEEecCcEEEEEEeccCCCeEEEEcCChHHHHHHHHHHHHHHHHHHhccC
Confidence                             444568999999999999999999999988889999999999999999999999999999988


Q ss_pred             C
Q psy3983         210 P  210 (318)
Q Consensus       210 ~  210 (318)
                      |
T Consensus        99 p   99 (99)
T d1ef1a2          99 P   99 (99)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-28  Score=194.88  Aligned_cols=99  Identities=69%  Similarity=1.201  Sum_probs=92.2

Q ss_pred             CcccceeEEeecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHh
Q psy3983          50 EMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV  129 (318)
Q Consensus        50 e~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQl  129 (318)
                      |+||++||.++|.+|+++|||+++.||.||+.+++                                             
T Consensus         1 e~YGv~~~~vkd~~~~~~~LGi~~~GI~iy~~~~~---------------------------------------------   35 (99)
T d1h4ra2           1 EMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENR---------------------------------------------   35 (99)
T ss_dssp             TTTTCEEEEEEETTCCEEEEEECSSEEEEECTTCS---------------------------------------------
T ss_pred             CCCCcEeEEEcCCCCCcEEEEEecCCeEEEeCCCe---------------------------------------------
Confidence            69999999999999999999999999999997766                                             


Q ss_pred             hhhhhcCCCCCCCcccccccccCccCccccccccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccC
Q psy3983         130 SRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRK  209 (318)
Q Consensus       130 K~di~~rl~C~~~~a~lL~p~~~f~W~~I~~lsf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~  209 (318)
                                       ..|...|+|++|.+|||++++|+|++.++...+++|+++++++||+||++|+++|.|||++|+
T Consensus        36 -----------------~~~~~~f~W~~I~~lsf~~kkf~I~~~~~~~~~~~F~~~~~~~aK~lw~~c~e~H~Fy~~~r~   98 (99)
T d1h4ra2          36 -----------------LTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRK   98 (99)
T ss_dssp             -----------------SSCSEEEEGGGEEEEEEETTEEEEEESSTTSCCEEEECCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -----------------ecCceEEecccEEEEEecceEEEEEEcCCCCceEEEEcCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence                             445578999999999999999999999888888999999999999999999999999999886


Q ss_pred             C
Q psy3983         210 P  210 (318)
Q Consensus       210 ~  210 (318)
                      +
T Consensus        99 s   99 (99)
T d1h4ra2          99 A   99 (99)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.5e-23  Score=163.15  Aligned_cols=88  Identities=27%  Similarity=0.548  Sum_probs=79.9

Q ss_pred             cceeEEeecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhh
Q psy3983          53 GVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRS  132 (318)
Q Consensus        53 Gv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~d  132 (318)
                      |++||.++|.+|+++|||+++.||.||+.+.+                                                
T Consensus         1 Gv~~h~vkd~~g~~~~lGv~~~GI~vy~~~~~------------------------------------------------   32 (92)
T d1gg3a2           1 GVDLHKAKDLEGVDIILGVCSSGLLVYKDKLR------------------------------------------------   32 (92)
T ss_dssp             TCEEEECCBTTTBCCEEEESSSEEEEESSSCC------------------------------------------------
T ss_pred             CcccEEEECCCCCEEEEEEccCEEEEEECCCE------------------------------------------------
Confidence            89999999999999999999999999976554                                                


Q ss_pred             hhcCCCCCCCcccccccccCccCccccccccccceEEEEeCCC----CCCceEEEcCCccchHHHHHHhhhcccccc
Q psy3983         133 AGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDK----KAPDFVFFAPRVRVNKRILALCMGNHELYM  205 (318)
Q Consensus       133 i~~rl~C~~~~a~lL~p~~~f~W~~I~~lsf~~kkF~Ikp~dk----k~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~  205 (318)
                                       ...|+|++|.+++|++|+|.|++.+.    +..+++|+++++++||+||++||++|.||+
T Consensus        33 -----------------i~~f~W~~I~~isf~~k~F~i~~~~~~~~~~~~~~~F~~~~~~~aK~lwk~cve~H~FfR   92 (92)
T d1gg3a2          33 -----------------INRFPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR   92 (92)
T ss_dssp             -----------------CEEEEGGGCCEEEEETTEEEEECCCSSSSSCCCEEEEECSSHHHHHHHHHHHHHHHHHCC
T ss_pred             -----------------EEEEehHHeEEEeecCCEEEEEEecCCCCccceEEEEEcCCHHHHHHHHHHHHHhhhhcC
Confidence                             35899999999999999999998653    245799999999999999999999999995

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.8e-11  Score=91.28  Aligned_cols=56  Identities=43%  Similarity=0.856  Sum_probs=47.4

Q ss_pred             HHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCC
Q psy3983          42 YLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE  110 (318)
Q Consensus        42 fLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~  110 (318)
                      |-.||+.|++.+.+||||  .|++|...||++++             ++.+|..++.+|+.|.|+|||||+
T Consensus        27 ~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k-------------~l~kq~~~~~~~~~l~F~VKFYpE   84 (84)
T d1ef1a3          27 FDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNK-------------KVTAQDVRKESPLLFKFRAKFYPE   84 (84)
T ss_dssp             HHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSS-------------BGGGSCBCCCSSEEEEEEESSCCS
T ss_pred             HHHHHHHcCCcccccceEEEECCCCCeEeccCCC-------------chhhhccCCCCCEEEEEEEEeccC
Confidence            344667778889999999  88999999999998             366776778889999999999996

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.6e-10  Score=88.00  Aligned_cols=54  Identities=39%  Similarity=0.703  Sum_probs=45.1

Q ss_pred             HHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCC
Q psy3983          43 LKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE  110 (318)
Q Consensus        43 Lkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~  110 (318)
                      -.||++|++.+.+||||  .| +|...||++++             ++.+|.++..+|+.|.|+|||||+
T Consensus        29 d~Vc~~L~L~E~~YFGL~y~~-~~~~~WLd~~k-------------~l~kq~~~~~~~~~~~F~VKFYpE   84 (84)
T d1h4ra3          29 DLVCRTLGLRETWFFGLQYTI-KDTVAWLKMDK-------------KVLDHDVSKEEPVTFHFLAKFYPE   84 (84)
T ss_dssp             HHHHHHHTCCCGGGEEEEEEE-TTEEEECCTTS-------------BGGGSSCCCSSSEEEEEEESSCCS
T ss_pred             HHHHHHcCCcccccceEEEec-CCceEEccCCC-------------chhhhccCCCCCEEEEEEEEeccC
Confidence            44666778889999999  56 57889999998             477777788899999999999996

>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2e-09  Score=82.43  Aligned_cols=53  Identities=26%  Similarity=0.622  Sum_probs=41.4

Q ss_pred             HHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecC
Q psy3983          42 YLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYP  109 (318)
Q Consensus        42 fLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp  109 (318)
                      |-.||+.|++.+.+||||  .|++|...||+++++             +.+| + +.+|+.|.|+|||||
T Consensus        27 ~~~Vc~~l~l~E~~YFGL~y~d~~~~~~WLd~~K~-------------i~kq-~-~~~~~~l~FrVKFYP   81 (81)
T d1gg3a3          27 LKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKE-------------IKKQ-V-RGVPWNFTFNVKFYP   81 (81)
T ss_dssp             HHHHHHHHTTCSCCSSSCEEECCSSSCCBCCTTSC-------------HHHH-T-TTSCSEEEEECSSCC
T ss_pred             HHHHHHHcCCcccccceEEEECCCCceEecccccc-------------hhhh-c-CCCCeEEEEEEEECC
Confidence            344666667888888888  788899999999984             3444 2 356889999999999

>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3e-08  Score=78.29  Aligned_cols=39  Identities=49%  Similarity=0.721  Sum_probs=36.4

Q ss_pred             CchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983         111 DVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus       111 d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      ||+++|++|+|||+||||+|.||++ +++|+.+.|+.|++
T Consensus         1 d~~~~L~~e~tr~l~ylQlr~dil~G~~~~~~~~a~~Laa   40 (111)
T d1ef1a1           1 DVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLAS   40 (111)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred             CHHHHHhhHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence            5778899999999999999999999 89999999999983

>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.2e-08  Score=77.61  Aligned_cols=39  Identities=23%  Similarity=0.266  Sum_probs=35.7

Q ss_pred             CCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983         110 EDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP  149 (318)
Q Consensus       110 ~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p  149 (318)
                      |||. .|.+|+|||+||||+|.||++ +++|+.+.|+.|++
T Consensus         1 pdp~-~L~~e~Tr~l~ylQlr~~i~~G~~~~~~~~a~~Laa   40 (106)
T d1gg3a1           1 PDPA-QLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGS   40 (106)
T ss_dssp             SSGG-GSSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred             CCHH-HhccHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence            5676 499999999999999999999 89999999999983

>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.5e-07  Score=71.92  Aligned_cols=48  Identities=58%  Similarity=1.085  Sum_probs=46.1

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhcc
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDL   49 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~L   49 (318)
                      .++|.+++..++++++.|+..|...|++++|||+.+|++.||++|++|
T Consensus        64 ~~lP~~~~~~~~~~~~~~~~~I~~~h~~l~g~s~~~A~~~fL~~~~~L  111 (111)
T d1ef1a1          64 KLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDL  111 (111)
T ss_dssp             CCSCHHHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS
T ss_pred             hcCchHHHhcccccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999999986

>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.33  E-value=3.6e-08  Score=77.62  Aligned_cols=44  Identities=18%  Similarity=0.267  Sum_probs=42.3

Q ss_pred             EeecCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCcccccc
Q psy3983         105 AKFYPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLT  148 (318)
Q Consensus       105 vkfyp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~  148 (318)
                      |||||+|+...+.+++|+|+||+|+|.||++ +++|+.+.|+.|+
T Consensus         1 vkf~~~d~~~~~~D~~~~~l~y~Q~k~dil~G~~~~~~~~a~~La   45 (114)
T d1mixa1           1 MKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFA   45 (114)
T ss_dssp             CCCCCCHHHHHTSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred             CcccCCCCcccccCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Confidence            7999999998899999999999999999999 8999999999998

>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.6e-07  Score=71.11  Aligned_cols=48  Identities=52%  Similarity=0.954  Sum_probs=45.9

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhcc
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDL   49 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~L   49 (318)
                      .++|..++...+.+.+.|+.+|...|++++|||+.+|++.||++|++|
T Consensus        64 ~~~P~~~~~~~~~~~~~~~~~I~~~hk~l~G~s~~~A~~~yL~~~~~L  111 (111)
T d1h4ra1          64 ELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDL  111 (111)
T ss_dssp             CCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTS
T ss_pred             hcCCchHHHHhhccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhC
Confidence            589999999999999999999999999999999999999999999976

>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Focal adhesion kinase 1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.28  E-value=4.6e-07  Score=72.33  Aligned_cols=49  Identities=12%  Similarity=0.352  Sum_probs=46.0

Q ss_pred             CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcc
Q psy3983           2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMY   52 (318)
Q Consensus         2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~y   52 (318)
                      +++|.++++.  +++..|..+|..+|+++.|+|+.+|++.||++|++|++|
T Consensus        75 ~flP~~~l~~--~~~~~~~k~I~~~~k~~~gls~~eA~~~fL~~~~~l~~f  123 (123)
T d2al6a1          75 RFFPKSLLDS--VKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRF  123 (123)
T ss_dssp             GTSCHHHHHS--SCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTTCCC
T ss_pred             hcCChHHHhh--cccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCC
Confidence            4799999995  679999999999999999999999999999999999987

>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=9.5e-08  Score=75.16  Aligned_cols=53  Identities=32%  Similarity=0.491  Sum_probs=41.6

Q ss_pred             chHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc-----ccCccCccccccccc
Q psy3983         112 VVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP-----KIGFPWSEIRNISFN  164 (318)
Q Consensus       112 ~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p-----~~~f~W~~I~~lsf~  164 (318)
                      ..++|.+|+|||+||||+|.||++ +++|+.+.|+.|+.     .+|+.=++.....|-
T Consensus         2 ~e~~L~~e~tr~l~ylQlr~dil~G~~~~~~~~a~~LAal~~Qae~GD~~~~~~~~~~~   60 (111)
T d1h4ra1           2 AEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFL   60 (111)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTT
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhCCCChhhcccchh
Confidence            345789999999999999999999 89999999999983     346633454444443

>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.9e-05  Score=61.29  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=35.7

Q ss_pred             ChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcc
Q psy3983          15 SPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMY   52 (318)
Q Consensus        15 ~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~y   52 (318)
                      ..+.|+.+|...|++++|||+.+|++.||++|++|++|
T Consensus        69 ~~~~~~~~I~~~h~~l~G~s~~~A~~~fL~~~~~l~~Y  106 (106)
T d1gg3a1          69 QTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY  106 (106)
T ss_dssp             CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHSTTT
T ss_pred             cHHHHHHHHHHHHHHccCcCHHHHHHHHHHHHhcCCCC
Confidence            34689999999999999999999999999999999987

>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.41  E-value=3.9e-05  Score=59.70  Aligned_cols=44  Identities=25%  Similarity=0.323  Sum_probs=38.4

Q ss_pred             CCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcc
Q psy3983           3 VSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMY   52 (318)
Q Consensus         3 ~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~y   52 (318)
                      ++|..+.      .+.|+..|...|++++|||+.+|+..||++|++|++|
T Consensus        71 ~lP~~~~------~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~Y  114 (114)
T d1mixa1          71 FLPKEYI------KQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTY  114 (114)
T ss_dssp             TSCGGGS------TTCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTT
T ss_pred             cCChhhc------hHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhcCCCC
Confidence            5666443      4569999999999999999999999999999999987

>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.22  E-value=0.005  Score=46.51  Aligned_cols=72  Identities=13%  Similarity=0.168  Sum_probs=54.6

Q ss_pred             cceeEEee---cC-C-CCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHH
Q psy3983          53 GVNYFEIK---NK-K-GTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYL  127 (318)
Q Consensus        53 Gv~YFgL~---d~-k-g~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~L  127 (318)
                      |..||.++   +. + ..+.||++++.|+.+++.+.+                                           
T Consensus         1 G~~fF~vk~~~~~~~~~~~~lLav~~~gv~lld~~t~-------------------------------------------   37 (92)
T d1mixa2           1 GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTK-------------------------------------------   37 (92)
T ss_dssp             TCEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTC-------------------------------------------
T ss_pred             CCceEEEEEEecCCCCCCCEEEEECcceEEEEcCCCC-------------------------------------------
Confidence            78899982   22 2 357899999999999987655                                           


Q ss_pred             HhhhhhhcCCCCCCCcccccccccCccCccccccccccceEEEEeCCCCCCceEEEcCCc
Q psy3983         128 QVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRV  187 (318)
Q Consensus       128 QlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~lsf~~kkF~Ikp~dkk~~~~~F~~~~~  187 (318)
                                          .+...+|++.|++-+..+..|.|+..+.....+.|.|+..
T Consensus        38 --------------------~~l~~~py~~Ir~~g~~~~~F~~~~G~~~~g~~~f~T~q~   77 (92)
T d1mixa2          38 --------------------EVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTTEG   77 (92)
T ss_dssp             --------------------CEEEEEEGGGCCEEEECSSEEEEECGGGSSSCEEEECSCH
T ss_pred             --------------------ceEEEcchhheeeccCCCCEEEEEECCCcceEEEEEeCCH
Confidence                                0124778889999888889999998654445788988864

>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Focal adhesion kinase 1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.94  E-value=0.0031  Score=49.35  Aligned_cols=31  Identities=23%  Similarity=0.133  Sum_probs=25.1

Q ss_pred             HhHHHHHHHHHhhhhhhc-CCC-CCCCcccccc
Q psy3983         118 QDITLRLFYLQVSRSAGS-RVR-FPPGPNCLLT  148 (318)
Q Consensus       118 qe~TRylf~LQlK~di~~-rl~-C~~~~a~lL~  148 (318)
                      +.+|+++||+|+|.|+++ .++ |+.+.|+.|+
T Consensus        10 D~~t~~~~y~Q~~~d~l~g~~~~~~~e~Ai~La   42 (123)
T d2al6a1          10 DKPTLNFFYQQVKNDYMLEIADQVDQEIALKLG   42 (123)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            448999999999999999 675 5555677777