Psyllid ID: psy3995

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHcccccccEEEEccccccEEEEcHHHHHHHHHHcccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHH
Coil and Loop (DISEMBL)
MAEVGTNVAAFLGKLWRmvedpetndliswseNGQSFLIRNQSKFAKELLpryykhnnmASFIRQLN
Flexible Loop (DISEMBL)
maevgtnvAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLpryykhnnmasfirqln
Low Complexity Region (SEG)
MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN
Disordered region (IsUnstruct)
*****TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMA*******
Disordered Region (DISOPRED)
******N***FLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN
Disordered Region (DISEMBL)
MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN
Disordered Region (DISPRO)
*****TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
P22813	691	Heat shock factor protein	yes	N/A	0.985	0.095	0.681	3e-22
P38533	535	Heat shock factor protein	yes	N/A	0.940	0.117	0.634	9e-21
Q03933	536	Heat shock factor protein	yes	N/A	0.940	0.117	0.634	9e-21
P41154	451	Heat shock factor protein	N/A	N/A	0.940	0.139	0.650	1e-20
P38529	491	Heat shock factor protein	no	N/A	0.925	0.126	0.661	8e-20
Q9R0L1	492	Heat shock factor protein	no	N/A	0.895	0.121	0.666	1e-19
Q9ULV5	492	Heat shock factor protein	no	N/A	0.895	0.121	0.666	1e-19
Q1HGE8	492	Heat shock factor protein	yes	N/A	0.895	0.121	0.666	1e-19
P38530	564	Heat shock factor protein	no	N/A	0.940	0.111	0.619	2e-19
Q00613	529	Heat shock factor protein	no	N/A	0.925	0.117	0.629	2e-19

>sp|P22813|HSF_DROME Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 57/66 (86%)

Query: 2   AEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMAS 61
           A +G+ V AFL KLWR+V+D +TN LI W+++GQSF+I+NQ++FAKELLP  YKHNNMAS
Sbjct: 40  AAIGSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMAS 99

Query: 62  FIRQLN 67
           FIRQLN
Sbjct: 100 FIRQLN 105

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. In higher eukaryotes, HSF is unable to bind to the HSE unless the cells are heat shocked.
Drosophila melanogaster (taxid: 7227)

>sp|P38533|HSF2_MOUSE Heat shock factor protein 2 OS=Mus musculus GN=Hsf2 PE=2 SV=2

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 54/63 (85%)

Query: 5  GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
           +NV AFL KLW +VE+  TN+ I+WS+NGQSFL+ ++ +FAKE+LP+Y+KHNNMASF+R
Sbjct: 4  SSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVR 63

Query: 65 QLN 67
          QLN
Sbjct: 64 QLN 66

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. In higher eukaryotes, HSF is unable to bind to the HSE unless the cells are heat shocked. HSF2 is expressed in a form that binds DNA constitutively but loses DNA binding by incubation at greater than 41 degrees C.

Mus musculus (taxid: 10090)

>sp|Q03933|HSF2_HUMAN Heat shock factor protein 2 OS=Homo sapiens GN=HSF2 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 54/63 (85%)

Query: 5  GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
           +NV AFL KLW +VE+  TN+ I+WS+NGQSFL+ ++ +FAKE+LP+Y+KHNNMASF+R
Sbjct: 4  SSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVR 63

Query: 65 QLN 67
          QLN
Sbjct: 64 QLN 66

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. In higher eukaryotes, HSF is unable to bind to the HSE unless the cells are heat shocked.

Homo sapiens (taxid: 9606)

>sp|P41154|HSF_XENLA Heat shock factor protein OS=Xenopus laevis GN=hsf1 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/63 (65%), Positives = 52/63 (82%)

Query: 5  GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
          G+NV AFL KLW +VEDP+T+ LI WS  G SF + +Q +FAKE+LP+Y+KHNNMASF+R
Sbjct: 9  GSNVPAFLAKLWTLVEDPDTDPLICWSPEGNSFHVFDQGQFAKEVLPKYFKHNNMASFVR 68

Query: 65 QLN 67
          QLN
Sbjct: 69 QLN 71

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Xenopus laevis (taxid: 8355)

>sp|P38529|HSF1_CHICK Heat shock factor protein 1 OS=Gallus gallus GN=HSF1 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 53/62 (85%)

Query: 6  TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
          +NV+AFL KLW +VEDPET+ LI WS +G SF + +Q +FAKE+LP+Y+KHNNMASF+RQ
Sbjct: 18 SNVSAFLTKLWTLVEDPETDPLICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQ 77

Query: 66 LN 67
          LN
Sbjct: 78 LN 79

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. HSF1 is unable to bind to the HSE unless the cells are heat shocked or treated with nonionic detergents. It presents constitutive DNA binding activity when the C-terminal is deleted.

Gallus gallus (taxid: 9031)

>sp|Q9R0L1|HSF4_MOUSE Heat shock factor protein 4 OS=Mus musculus GN=Hsf4 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 51/60 (85%)

Query: 8  VAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
          V AFLGKLW +V DP T+ LI WS +G SFL+ +QS+FAKE+LP+Y+KH+NMASF+RQLN
Sbjct: 17 VPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLN 76

DNA-binding protein that specifically binds heat shock promoter elements (HSE). The HSF4A isoform represses transcription while the HSF4B isoform activates transcription.

Mus musculus (taxid: 10090)

>sp|Q9ULV5|HSF4_HUMAN Heat shock factor protein 4 OS=Homo sapiens GN=HSF4 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 51/60 (85%)

Query: 8  VAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
          V AFLGKLW +V DP T+ LI WS +G SFL+ +QS+FAKE+LP+Y+KH+NMASF+RQLN
Sbjct: 17 VPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLN 76

DNA-binding protein that specifically binds heat shock promoter elements (HSE). Isoform HSF4A represses transcription while the isoform HSF4B activates transcription.

Homo sapiens (taxid: 9606)

>sp|Q1HGE8|HSF4_CANFA Heat shock factor protein 4 OS=Canis familiaris GN=HSF4 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 51/60 (85%)

Query: 8  VAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
          V AFLGKLW +V DP T+ LI WS +G SFL+ +QS+FAKE+LP+Y+KH+NMASF+RQLN
Sbjct: 17 VPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLN 76

DNA-binding protein that specifically binds heat shock promoter elements (HSE).

Canis familiaris (taxid: 9615)

>sp|P38530|HSF2_CHICK Heat shock factor protein 2 OS=Gallus gallus GN=HSF2 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 52/63 (82%)

Query: 5  GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
          G  V AFL KLW +V +  +N LI+WS+NGQSFL+ ++ +FAKE+LP+Y+KHNNMASF+R
Sbjct: 18 GAGVPAFLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVR 77

Query: 65 QLN 67
          QLN
Sbjct: 78 QLN 80

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. HSF2 presents constitutive DNA binding activity, even with no heat shock.

Gallus gallus (taxid: 9031)

>sp|Q00613|HSF1_HUMAN Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 51/62 (82%)

Query: 6  TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
          +NV AFL KLW +V DP+T+ LI WS +G SF + +Q +FAKE+LP+Y+KHNNMASF+RQ
Sbjct: 13 SNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQ 72

Query: 66 LN 67
          LN
Sbjct: 73 LN 74

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. In higher eukaryotes, HSF is unable to bind to the HSE unless the cells are heat shocked.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
383862691	640	PREDICTED: heat shock factor protein-lik	1.0	0.104	0.731	1e-24
328785915	640	PREDICTED: hypothetical protein LOC41185	1.0	0.104	0.731	2e-24
307189350	255	Heat shock factor protein [Camponotus fl	1.0	0.262	0.731	3e-24
345492642	661	PREDICTED: hypothetical protein LOC10011	1.0	0.101	0.716	9e-24
157125869	661	heat shock transcription factor (hsf) [A	0.985	0.099	0.757	3e-23
340719309	653	PREDICTED: heat shock factor protein-lik	1.0	0.102	0.716	3e-23
350401014	638	PREDICTED: heat shock factor protein-lik	1.0	0.105	0.716	4e-23
427783369	639	Putative heat shock transcription factor	0.970	0.101	0.742	8e-22
332028151	607	Heat shock factor protein [Acromyrmex ec	0.985	0.108	0.712	9e-22
333805195	627	heat shock factor-a2 [Bombyx mori]	1.0	0.106	0.686	1e-21

>gi|383862691|ref|XP_003706817.1| PREDICTED: heat shock factor protein-like [Megachile rotundata]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 60/67 (89%)

Query: 1  MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMA 60
          + E+GT+V AFL KLW++VEDPET+DLI WS NG+SF IRNQ++FA+ELLP YYKHNNMA
Sbjct: 4  IPELGTSVPAFLAKLWKLVEDPETDDLICWSPNGRSFFIRNQAQFARELLPHYYKHNNMA 63

Query: 61 SFIRQLN 67
          SF+RQLN
Sbjct: 64 SFVRQLN 70

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785915|ref|XP_395321.3| PREDICTED: hypothetical protein LOC411854 [Apis mellifera]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 60/67 (89%)

Query: 1  MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMA 60
          + E+GT+V AFL KLW++VEDPET+DLI WS NG+SF IRNQ++FA+ELLP YYKHNNMA
Sbjct: 4  IPELGTSVPAFLAKLWKLVEDPETDDLICWSPNGRSFFIRNQAQFARELLPHYYKHNNMA 63

Query: 61 SFIRQLN 67
          SF+RQLN
Sbjct: 64 SFVRQLN 70

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189350|gb|EFN73771.1| Heat shock factor protein [Camponotus floridanus]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 60/67 (89%)

Query: 1  MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMA 60
          +AE+GT V AFL KLW++VEDPET++LI WS NG+SF I+NQ+KFA+ELLP YYKHNNMA
Sbjct: 4  VAELGTGVPAFLAKLWKLVEDPETDNLICWSPNGRSFFIKNQAKFARELLPHYYKHNNMA 63

Query: 61 SFIRQLN 67
          SF+RQLN
Sbjct: 64 SFVRQLN 70

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492642|ref|XP_001600908.2| PREDICTED: hypothetical protein LOC100116399 [Nasonia vitripennis]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 59/67 (88%)

Query: 1  MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMA 60
          + E+GT+V AFLGKLWR+VEDPET+DLI W+   +SF IRNQ++FA+ELLP YYKHNNMA
Sbjct: 4  ITEMGTSVPAFLGKLWRLVEDPETDDLICWAPXXRSFFIRNQAQFARELLPHYYKHNNMA 63

Query: 61 SFIRQLN 67
          SF+RQLN
Sbjct: 64 SFVRQLN 70

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125869|ref|XP_001654428.1| heat shock transcription factor (hsf) [Aedes aegypti] gi|108873493|gb|EAT37718.1| AAEL010319-PA [Aedes aegypti]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 57/66 (86%)

Query: 2  AEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMAS 61
           E G  V AFL KLWR+VEDPETNDLISWS +G+SF+I+NQ++FAKELLP  YKHNNMAS
Sbjct: 5  TETGAGVPAFLAKLWRLVEDPETNDLISWSTDGRSFIIQNQAQFAKELLPLNYKHNNMAS 64

Query: 62 FIRQLN 67
          FIRQLN
Sbjct: 65 FIRQLN 70

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719309|ref|XP_003398097.1| PREDICTED: heat shock factor protein-like [Bombus terrestris]

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 59/67 (88%)

Query: 1  MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMA 60
          + E+GT+V AFL KLW++VED +T+DLI WS NG+SF IRNQ++FA+ELLP YYKHNNMA
Sbjct: 4  IPELGTSVPAFLAKLWKLVEDSDTDDLICWSPNGRSFFIRNQAQFARELLPHYYKHNNMA 63

Query: 61 SFIRQLN 67
          SFIRQLN
Sbjct: 64 SFIRQLN 70

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401014|ref|XP_003486028.1| PREDICTED: heat shock factor protein-like [Bombus impatiens]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 59/67 (88%)

Query: 1  MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMA 60
          + E+GT+V AFL KLW++VED +T+DLI WS NG+SF IRNQ++FA+ELLP YYKHNNMA
Sbjct: 4  IPELGTSVPAFLAKLWKLVEDSDTDDLICWSPNGRSFFIRNQAQFARELLPHYYKHNNMA 63

Query: 61 SFIRQLN 67
          SFIRQLN
Sbjct: 64 SFIRQLN 70

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427783369|gb|JAA57136.1| Putative heat shock transcription factor [Rhipicephalus pulchellus]

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/66 (74%), Positives = 57/66 (86%), Gaps = 1/66 (1%)

Query: 3  EVG-TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMAS 61
          EVG +NV AFL KLW++VED + NDLISWS NGQSF+I NQ++FAKELLP Y+KHNNMAS
Sbjct: 5  EVGVSNVPAFLVKLWKLVEDEKCNDLISWSSNGQSFIIHNQTQFAKELLPLYFKHNNMAS 64

Query: 62 FIRQLN 67
           IRQLN
Sbjct: 65 LIRQLN 70

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028151|gb|EGI68202.1| Heat shock factor protein [Acromyrmex echinatior]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 55/66 (83%)

Query: 2  AEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMAS 61
          + +G NV AFL KLW+MVEDP+TN+LISWS  G +FLI+NQS F  +LLP YYKHNNMAS
Sbjct: 5  SNLGANVPAFLAKLWKMVEDPDTNNLISWSPGGNTFLIKNQSIFTSKLLPHYYKHNNMAS 64

Query: 62 FIRQLN 67
          FIRQLN
Sbjct: 65 FIRQLN 70

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|333805195|dbj|BAK26396.1| heat shock factor-a2 [Bombyx mori]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 57/67 (85%)

Query: 1  MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMA 60
          + E+G +V AFLGKLW++V D ETN LISWS  G++F+I+NQ+ FA+ELLP YYKHNNMA
Sbjct: 4  VVEIGASVPAFLGKLWKLVNDSETNQLISWSPGGKTFVIKNQADFARELLPLYYKHNNMA 63

Query: 61 SFIRQLN 67
          SFIRQLN
Sbjct: 64 SFIRQLN 70

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
FB|FBgn0001222	691	Hsf "Heat shock factor" [Droso	0.985	0.095	0.681	6.8e-20
UNIPROTKB|F1NNK6	411	HSF4 "Uncharacterized protein"	0.925	0.150	0.693	1.2e-19
UNIPROTKB|E1C0J2	445	HSF4 "Uncharacterized protein"	0.925	0.139	0.693	1.6e-19
RGD|68395	513	Hsf2 "heat shock transcription	0.925	0.120	0.645	2e-19
UNIPROTKB|F6QXW5	534	HSF2 "Uncharacterized protein"	0.925	0.116	0.645	2.2e-19
MGI|MGI:96239	535	Hsf2 "heat shock factor 2" [Mu	0.925	0.115	0.645	2.2e-19
UNIPROTKB|Q03933	536	HSF2 "Heat shock factor protei	0.925	0.115	0.645	2.2e-19
UNIPROTKB|P38529	491	HSF1 "Heat shock factor protei	0.940	0.128	0.666	3.7e-19
ZFIN|ZDB-GENE-050306-18	441	hsf4 "heat shock transcription	0.925	0.140	0.677	7.3e-19
ZFIN|ZDB-GENE-000616-16	539	hsf1 "heat shock transcription	0.940	0.116	0.650	1.3e-18

FB|FBgn0001222 Hsf "Heat shock factor" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 6.8e-20, P = 6.8e-20
 Identities = 45/66 (68%), Positives = 57/66 (86%)

Query:     2 AEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMAS 61
             A +G+ V AFL KLWR+V+D +TN LI W+++GQSF+I+NQ++FAKELLP  YKHNNMAS
Sbjct:    40 AAIGSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMAS 99

Query:    62 FIRQLN 67
             FIRQLN
Sbjct:   100 FIRQLN 105

GO:0003677 "DNA binding" evidence=NAS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009408 "response to heat" evidence=IMP;NAS;IDA;TAS

GO:0005634 "nucleus" evidence=ISS;NAS;IDA

GO:0005700 "polytene chromosome" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0031427 "response to methotrexate" evidence=IEP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1NNK6 HSF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 238 (88.8 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 43/62 (69%), Positives = 52/62 (83%)

Query:     6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
             +NV AFL KLW +VEDPETN LI WS NG SF + +Q +FAKE+LP+Y+KHNNMASF+RQ
Sbjct:     1 SNVPAFLTKLWTLVEDPETNHLICWSTNGTSFHVFDQGRFAKEVLPKYFKHNNMASFVRQ 60

Query:    66 LN 67
             LN
Sbjct:    61 LN 62

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1C0J2 HSF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 238 (88.8 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 43/62 (69%), Positives = 52/62 (83%)

Query:     6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
             +NV AFL KLW +VEDPETN LI WS NG SF + +Q +FAKE+LP+Y+KHNNMASF+RQ
Sbjct:    15 SNVPAFLTKLWTLVEDPETNHLICWSTNGTSFHVFDQGRFAKEVLPKYFKHNNMASFVRQ 74

Query:    66 LN 67
             LN
Sbjct:    75 LN 76

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0033169 "histone H3-K9 demethylation" evidence=IEA

GO:0043010 "camera-type eye development" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045597 "positive regulation of cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048468 "cell development" evidence=IEA

GO:0070207 "protein homotrimerization" evidence=IEA

RGD|68395 Hsf2 "heat shock transcription factor 2" [Rattus norvegicus (taxid:10116)]

 Score = 239 (89.2 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 40/62 (64%), Positives = 54/62 (87%)

Query:     6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
             +NV AFL KLW +VE+  TN+ I+WS+NGQSFL+ ++ +FAKE+LP+Y+KHNNMASF+RQ
Sbjct:     5 SNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQ 64

Query:    66 LN 67
             LN
Sbjct:    65 LN 66

GO:0001162 "RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding" evidence=ISO

GO:0003677 "DNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0007283 "spermatogenesis" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F6QXW5 HSF2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 40/62 (64%), Positives = 54/62 (87%)

Query:     6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
             +NV AFL KLW +VE+  TN+ I+WS+NGQSFL+ ++ +FAKE+LP+Y+KHNNMASF+RQ
Sbjct:     5 SNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQ 64

Query:    66 LN 67
             LN
Sbjct:    65 LN 66

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:96239 Hsf2 "heat shock factor 2" [Mus musculus (taxid:10090)]

 Score = 239 (89.2 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 40/62 (64%), Positives = 54/62 (87%)

Query:     6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
             +NV AFL KLW +VE+  TN+ I+WS+NGQSFL+ ++ +FAKE+LP+Y+KHNNMASF+RQ
Sbjct:     5 SNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQ 64

Query:    66 LN 67
             LN
Sbjct:    65 LN 66

GO:0001162 "RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding" evidence=ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

UNIPROTKB|Q03933 HSF2 "Heat shock factor protein 2" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 40/62 (64%), Positives = 54/62 (87%)

Query:     6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
             +NV AFL KLW +VE+  TN+ I+WS+NGQSFL+ ++ +FAKE+LP+Y+KHNNMASF+RQ
Sbjct:     5 SNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQ 64

Query:    66 LN 67
             LN
Sbjct:    65 LN 66

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001162 "RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|P38529 HSF1 "Heat shock factor protein 1" [Gallus gallus (taxid:9031)]

 Score = 236 (88.1 bits), Expect = 3.7e-19, P = 3.7e-19
 Identities = 42/63 (66%), Positives = 54/63 (85%)

Query:     5 GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
             G+NV+AFL KLW +VEDPET+ LI WS +G SF + +Q +FAKE+LP+Y+KHNNMASF+R
Sbjct:    17 GSNVSAFLTKLWTLVEDPETDPLICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVR 76

Query:    65 QLN 67
             QLN
Sbjct:    77 QLN 79

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-050306-18 hsf4 "heat shock transcription factor 4" [Danio rerio (taxid:7955)]

 Score = 232 (86.7 bits), Expect = 7.3e-19, P = 7.3e-19
 Identities = 42/62 (67%), Positives = 51/62 (82%)

Query:     6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
             +NV AFL KLW +VEDPETN LI WS  G SF + +Q +FAKE+LP+Y+KHNNMASF+RQ
Sbjct:    16 SNVPAFLTKLWTLVEDPETNHLICWSATGTSFHVFDQGRFAKEVLPKYFKHNNMASFVRQ 75

Query:    66 LN 67
             LN
Sbjct:    76 LN 77

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002089 "lens morphogenesis in camera-type eye" evidence=IMP

ZFIN|ZDB-GENE-000616-16 hsf1 "heat shock transcription factor 1" [Danio rerio (taxid:7955)]

 Score = 232 (86.7 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 41/63 (65%), Positives = 52/63 (82%)

Query:     5 GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
             G NV AFL KLW +VEDP+T+ LI WS NG SF + +Q +F+KE+LP+Y+KHNNMASF+R
Sbjct:    15 GNNVPAFLTKLWTLVEDPDTDPLICWSPNGTSFHVFDQGRFSKEVLPKYFKHNNMASFVR 74

Query:    65 QLN 67
             QLN
Sbjct:    75 QLN 77

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0009408 "response to heat" evidence=IEA;IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P22813	HSF_DROME	No assigned EC number	0.6818	0.9850	0.0955	yes	N/A
Q652B0	HFB2C_ORYSJ	No assigned EC number	0.5263	0.8507	0.1255	yes	N/A
Q1HGE8	HSF4_CANFA	No assigned EC number	0.6666	0.8955	0.1219	yes	N/A
Q03933	HSF2_HUMAN	No assigned EC number	0.6349	0.9402	0.1175	yes	N/A
Q02953	HSF_SCHPO	No assigned EC number	0.5333	0.8955	0.0985	yes	N/A
P38533	HSF2_MOUSE	No assigned EC number	0.6349	0.9402	0.1177	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	67
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	4e-31
smart00415	105	smart00415, HSF, heat shock factor	9e-31
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	5e-22

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  103 bits (259), Expect = 4e-31
 Identities = 33/58 (56%), Positives = 48/58 (82%)

Query: 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
           FL KL+ ++EDP  +D+ISWSE+G SF+I +  +FAK++LP+Y+KHNN +SF+RQLN
Sbjct: 1  PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLN 58

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  102 bits (257), Expect = 9e-31
 Identities = 35/61 (57%), Positives = 47/61 (77%)

Query: 7  NVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQL 66
              FL KL+ +VEDP T+ +ISWS +G+SF+I +  +FAK LLPRY+KHNN +SF+RQL
Sbjct: 1  QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 67 N 67
          N
Sbjct: 61 N 61

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score = 84.8 bits (210), Expect = 5e-22
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 8  VAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
             F+ KL++++E+PE   LI WS +G+SF+I +  +F K +LPRY+KH N ASF+RQLN
Sbjct: 10 PKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLN 69

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	99.95
smart00415	105	HSF heat shock factor.	99.94
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.94
KOG0627|consensus	304		99.92
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	97.7
smart00413	87	ETS erythroblast transformation specific domain. v	97.51
KOG3806|consensus	177		96.69
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.66

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=99.95  E-value=1.2e-28  Score=146.78  Aligned_cols=58  Identities=55%  Similarity=1.111  Sum_probs=53.9

Q ss_pred             hHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995          10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN   67 (67)
Q Consensus        10 ~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN   67 (67)
                      +|+.|||+||+|++++++|+|++||++|+|+|+++|+++|||+||+|++|+||+||||
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn   58 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLN   58 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHH
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEee
Confidence            5999999999999999999999999999999999999999999999999999999998

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=99.94  E-value=3.9e-28  Score=145.53  Aligned_cols=61  Identities=57%  Similarity=1.039  Sum_probs=59.3

Q ss_pred             CcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995           7 NVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN   67 (67)
Q Consensus         7 ~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN   67 (67)
                      ++|+|+.|||+||+|++++++|+|++||++|+|+|++.|+++|||+||+|++|+||+||||
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn   61 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLN   61 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999998

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.94  E-value=1.9e-27  Score=162.72  Aligned_cols=67  Identities=46%  Similarity=0.871  Sum_probs=62.8

Q ss_pred             CCCCCCCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995           1 MAEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN   67 (67)
Q Consensus         1 m~~~~~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN   67 (67)
                      |+....+++.|+.|||+||+++++.++|+|+++|++|+|.|++.|.+.|||+||+|.+|+|||||||
T Consensus         3 ~s~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN   69 (282)
T COG5169           3 MSSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLN   69 (282)
T ss_pred             CCcCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHH
Confidence            3445667779999999999999999999999999999999999999999999999999999999998

>KOG0627|consensus

Probab=99.92  E-value=1.3e-25  Score=153.31  Aligned_cols=63  Identities=57%  Similarity=1.003  Sum_probs=61.0

Q ss_pred             CCCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995           5 GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN   67 (67)
Q Consensus         5 ~~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN   67 (67)
                      ...+++|+.|||+||+||.++++|+|+++|.+|||.|+++|.+.+||+||||+||+||+||||
T Consensus         9 ~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN   71 (304)
T KOG0627|consen    9 ASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLN   71 (304)
T ss_pred             cCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeec
Confidence            347899999999999999999999999999999999999999999999999999999999998

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=97.70  E-value=3.3e-05  Score=45.03  Aligned_cols=37  Identities=30%  Similarity=0.591  Sum_probs=32.7

Q ss_pred             HHHHHHhhcCCCCCCceEEcC-CCCeEEEechhhHHHh
Q psy3995          12 LGKLWRMVEDPETNDLISWSE-NGQSFLIRNQSKFAKE   48 (67)
Q Consensus        12 ~~kL~~~l~~~~~~~~I~W~~-~G~~f~I~d~~~f~~~   48 (67)
                      -.=|.++|+|+++.++|+|++ +|..|.|.|++++++-
T Consensus         5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~l   42 (85)
T PF00178_consen    5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARL   42 (85)
T ss_dssp             HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHH
T ss_pred             HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHH
Confidence            445778899999999999999 9999999999999864

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>smart00413 ETS erythroblast transformation specific domain

Probab=97.51  E-value=0.0002  Score=42.10  Aligned_cols=37  Identities=27%  Similarity=0.593  Sum_probs=31.6

Q ss_pred             HHHHHHhhcCCCCCCceEEcC-CCCeEEEechhhHHHh
Q psy3995          12 LGKLWRMVEDPETNDLISWSE-NGQSFLIRNQSKFAKE   48 (67)
Q Consensus        12 ~~kL~~~l~~~~~~~~I~W~~-~G~~f~I~d~~~f~~~   48 (67)
                      .+=|.++|.||++.++|+|.+ ++.-|.+.|+++.++.
T Consensus         5 w~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~l   42 (87)
T smart00413        5 WQFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARL   42 (87)
T ss_pred             HHHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHH
Confidence            345788999999999999998 6888999999887764

variation of the helix-turn-helix motif

>KOG3806|consensus

Probab=96.69  E-value=0.0047  Score=40.42  Aligned_cols=44  Identities=16%  Similarity=0.356  Sum_probs=36.0

Q ss_pred             CcchHHHHHHHhhcCCCCCCceEEcC-CCCeEEEechhhHHHhhc
Q psy3995           7 NVAAFLGKLWRMVEDPETNDLISWSE-NGQSFLIRNQSKFAKELL   50 (67)
Q Consensus         7 ~~~~F~~kL~~~l~~~~~~~~I~W~~-~G~~f~I~d~~~f~~~vL   50 (67)
                      +.-.-.+=|-++|+|+++.++|.|+. +|--|.+.|+++-++.--
T Consensus        67 g~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG  111 (177)
T KOG3806|consen   67 GQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWG  111 (177)
T ss_pred             chhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHh
Confidence            34455666788899999999999999 788999999998887543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.66  E-value=0.081  Score=25.44  Aligned_cols=24  Identities=17%  Similarity=0.519  Sum_probs=16.7

Q ss_pred             HhhcCCCCCCceEEcCCCCeEEEe
Q psy3995          17 RMVEDPETNDLISWSENGQSFLIR   40 (67)
Q Consensus        17 ~~l~~~~~~~~I~W~~~G~~f~I~   40 (67)
                      ++++.+..+....|+|||+.|+..
T Consensus         3 ~~t~~~~~~~~p~~SpDGk~i~f~   26 (39)
T PF07676_consen    3 QLTNSPGDDGSPAWSPDGKYIYFT   26 (39)
T ss_dssp             EES-SSSSEEEEEE-TTSSEEEEE
T ss_pred             CcccCCccccCEEEecCCCEEEEE
Confidence            345666667788999999998764

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	67
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		4e-21
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		7e-20
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		8e-14
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		1e-13
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		1e-13
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		7e-13
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		1e-12
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		1e-12

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 54/62 (87%)
Query: 6  TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
          + V AFL KLWR+V+D +TN LI W+++GQSF+I+NQ++FAKELLP  YKHNNMASFIRQ
Sbjct: 2  SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61
Query: 66 LN 67
          LN
Sbjct: 62 LN 63

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 51/62 (82%)
Query: 6  TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
          +NV AFL KLW +V DP+T+ LI WS +G SF + +Q +FAKE+LP+Y+KHNNMASF+RQ
Sbjct: 15 SNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQ 74
Query: 66 LN 67
          LN
Sbjct: 75 LN 76

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 2  AEVGTNV-AAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMA 60
          A VG+    AF+ KLW MV D      I WS +G+S ++ N+ +F +E+LP+Y+KH+N A
Sbjct: 5  ASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFA 64
Query: 61 SFIRQLN 67
          SF+RQLN
Sbjct: 65 SFVRQLN 71

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
          AF+ KLW MV D      I WS +G+S ++ N+ +F +E+LP+Y+KH+N ASF+RQLN
Sbjct: 4  AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 61

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
          AF+ KLW MV D      I WS +G+S ++ N+ +F +E+LP+Y+KH+N ASF+RQLN
Sbjct: 2  AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 59

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
          AF+ KLW  V D      I WS +G+S ++ N+ +F +E+LP+Y+KH+N ASF+RQLN
Sbjct: 4  AFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 61

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
          AF+ KLW MV D      I WS +G+S ++ N+ +F +E+L +Y+KH+N ASF+RQLN
Sbjct: 2  AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLN 59

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
          AF+ KLW MV D      I WS +G+S ++ N+ +F +E+L +Y+KH+N ASF+RQLN
Sbjct: 2  AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLN 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
1hks_A	106	Heat-shock transcription factor; transcription reg	1e-34
2ldu_A	125	Heat shock factor protein 1; structural genomics,	7e-33
3hts_B	102	Heat shock transcription factor; transcription reg	2e-32

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  112 bits (282), Expect = 1e-34
 Identities = 44/63 (69%), Positives = 55/63 (87%)

Query: 5  GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
          G+ V AFL KLWR+V+D +TN LI W+++GQSF+I+NQ++FAKELLP  YKHNNMASFIR
Sbjct: 1  GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 65 QLN 67
          QLN
Sbjct: 61 QLN 63

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  108 bits (271), Expect = 7e-33
 Identities = 39/62 (62%), Positives = 51/62 (82%)

Query: 6  TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
          +NV AFL KLW +V DP+T+ LI WS +G SF + +Q +FAKE+LP+Y+KHNNMASF+RQ
Sbjct: 15 SNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQ 74

Query: 66 LN 67
          LN
Sbjct: 75 LN 76

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  106 bits (266), Expect = 2e-32
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query: 5  GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
               AF+ KLW MV D      I WS +G+S ++ N+ +F +E+LP+Y+KH+N ASF+R
Sbjct: 9  SMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVR 68

Query: 65 QLN 67
          QLN
Sbjct: 69 QLN 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
1hks_A	106	Heat-shock transcription factor; transcription reg	99.96
2ldu_A	125	Heat shock factor protein 1; structural genomics,	99.96
3hts_B	102	Heat shock transcription factor; transcription reg	99.96
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	97.12
1awc_A	110	Protein (GA binding protein alpha); complex (trans	97.01
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	97.0
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	96.96
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	96.93
4avp_A	106	ETS translocation variant 1; transcription, transc	96.8
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	96.8
2dao_A	118	Transcription factor ETV6; ETS domain, structural	96.71
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	96.64
1yo5_C	97	SAM pointed domain containing ETS transcription fa	96.59
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	95.91
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	95.88
1pue_E	89	Protein (transcription factor PU.1 (TF PU.1)); com	95.53
2lf8_A	128	Transcription factor ETV6; auto-inhibition; NMR {M	93.66

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=99.96  E-value=8.1e-32  Score=161.24  Aligned_cols=63  Identities=70%  Similarity=1.188  Sum_probs=60.8

Q ss_pred             CCCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995           5 GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN   67 (67)
Q Consensus         5 ~~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN   67 (67)
                      +.++|+|+.|||+||+||+++++|+|+++|++|+|+|+++|+++|||+||+|+||+||+||||
T Consensus         1 g~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN   63 (106)
T 1hks_A            1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLN   63 (106)
T ss_dssp             CTTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhh
Confidence            467889999999999999999999999999999999999999999999999999999999998

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.96  E-value=4e-31  Score=162.35  Aligned_cols=66  Identities=59%  Similarity=1.035  Sum_probs=63.2

Q ss_pred             CCCCCCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995           2 AEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN   67 (67)
Q Consensus         2 ~~~~~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN   67 (67)
                      +.+....++|+.|||+||+||+++++|+|+++|++|+|.|+++|+++|||+||+|+||+||+||||
T Consensus        11 ~~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN   76 (125)
T 2ldu_A           11 MAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLN   76 (125)
T ss_dssp             CCSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred             cccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhc
Confidence            356788999999999999999999999999999999999999999999999999999999999998

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.96  E-value=1.7e-31  Score=159.45  Aligned_cols=65  Identities=45%  Similarity=0.889  Sum_probs=60.8

Q ss_pred             CCCCCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995           3 EVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN   67 (67)
Q Consensus         3 ~~~~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN   67 (67)
                      .|+..+|+|+.|||+||+|++++++|+|+++|++|+|+|+++|+++|||+||+|++|+||+||||
T Consensus         7 ~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN   71 (102)
T 3hts_B            7 VGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN   71 (102)
T ss_dssp             ---CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhh
Confidence            46788999999999999999999999999999999999999999999999999999999999998

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=97.12  E-value=0.00049  Score=40.33  Aligned_cols=41  Identities=15%  Similarity=0.351  Sum_probs=33.4

Q ss_pred             cchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHh
Q psy3995           8 VAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKE   48 (67)
Q Consensus         8 ~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~   48 (67)
                      ....-+=|.++|+|++..++|+|...+.-|.+.|+++.++.
T Consensus         5 ~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArl   45 (98)
T 1fli_A            5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARR   45 (98)
T ss_dssp             SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHH
T ss_pred             ceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHH
Confidence            33445556777899999999999998889999999888774

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=97.01  E-value=0.00065  Score=40.58  Aligned_cols=37  Identities=22%  Similarity=0.408  Sum_probs=31.7

Q ss_pred             HHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhh
Q psy3995          13 GKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKEL   49 (67)
Q Consensus        13 ~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~v   49 (67)
                      +=|.++|+|+++.++|+|...+.-|.+.|+++.++.-
T Consensus         5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlW   41 (110)
T 1awc_A            5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKW   41 (110)
T ss_dssp             HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHH
T ss_pred             HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHH
Confidence            4477889999999999999998899999998887643

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=97.00  E-value=0.0012  Score=39.29  Aligned_cols=47  Identities=13%  Similarity=0.290  Sum_probs=38.0

Q ss_pred             CCCCCCcchHHHHHHHhhcCCC-CCCceEEcCC-CCeEEEechhhHHHh
Q psy3995           2 AEVGTNVAAFLGKLWRMVEDPE-TNDLISWSEN-GQSFLIRNQSKFAKE   48 (67)
Q Consensus         2 ~~~~~~~~~F~~kL~~~l~~~~-~~~~I~W~~~-G~~f~I~d~~~f~~~   48 (67)
                      ++|+.+....-+=|.++|.|++ ..++|+|... ..-|.+.|+++.++.
T Consensus         2 ~sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArl   50 (107)
T 1wwx_A            2 SSGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKM   50 (107)
T ss_dssp             CCCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHH
T ss_pred             CCCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHH
Confidence            4577778888888999999886 5689999874 567888999888774

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=96.96  E-value=0.00096  Score=39.32  Aligned_cols=42  Identities=14%  Similarity=0.315  Sum_probs=34.1

Q ss_pred             CcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHh
Q psy3995           7 NVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKE   48 (67)
Q Consensus         7 ~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~   48 (67)
                      +.-..-+=|.++|+|+++.++|+|...+.-|.+.|+++.++.
T Consensus         6 g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArl   47 (102)
T 2ypr_A            6 GQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARR   47 (102)
T ss_dssp             SSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHH
T ss_pred             CcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHH
Confidence            334455667888999998999999988889999999888764

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=96.93  E-value=0.00048  Score=40.02  Aligned_cols=41  Identities=17%  Similarity=0.443  Sum_probs=33.6

Q ss_pred             chHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhh
Q psy3995           9 AAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKEL   49 (67)
Q Consensus         9 ~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~v   49 (67)
                      ...-+=|.++|+|++..++|+|...+.-|.+.|+++.++.-
T Consensus         5 i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlW   45 (93)
T 1bc8_C            5 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLW   45 (93)
T ss_dssp             CCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHH
T ss_pred             ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHH
Confidence            34455678899999999999998888889999998887743

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=96.80  E-value=0.0015  Score=38.69  Aligned_cols=39  Identities=21%  Similarity=0.516  Sum_probs=33.2

Q ss_pred             hHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHh
Q psy3995          10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKE   48 (67)
Q Consensus        10 ~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~   48 (67)
                      ...+=|.++|+|+++.++|+|...+..|.+.|+++.++.
T Consensus        13 ~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~l   51 (106)
T 4avp_A           13 QLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARR   51 (106)
T ss_dssp             CHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHH
T ss_pred             eHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHH
Confidence            455667888999999999999999889999999887764

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=96.80  E-value=0.0011  Score=41.36  Aligned_cols=44  Identities=18%  Similarity=0.416  Sum_probs=37.0

Q ss_pred             CCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhh
Q psy3995           6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKEL   49 (67)
Q Consensus         6 ~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~v   49 (67)
                      ++....-+=|.++|+|++..++|+|...+..|.+.|+++.++.-
T Consensus        37 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlW   80 (146)
T 1gvj_A           37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRW   80 (146)
T ss_dssp             CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHH
T ss_pred             CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHH
Confidence            44556677788899999999999999999999999999888743

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.71  E-value=0.0016  Score=39.26  Aligned_cols=46  Identities=13%  Similarity=0.375  Sum_probs=36.0

Q ss_pred             CCCCcchHHHHHHHhhcCCCCCCceEEcC-CCCeEEEechhhHHHhh
Q psy3995           4 VGTNVAAFLGKLWRMVEDPETNDLISWSE-NGQSFLIRNQSKFAKEL   49 (67)
Q Consensus         4 ~~~~~~~F~~kL~~~l~~~~~~~~I~W~~-~G~~f~I~d~~~f~~~v   49 (67)
                      +.......-+=|.++|+|+++.++|+|.. ++.-|.+.|+++.++.-
T Consensus         4 ~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlW   50 (118)
T 2dao_A            4 GSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLW   50 (118)
T ss_dssp             CCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHH
T ss_pred             ccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHH
Confidence            34445556677889999999999999987 45689999998877643

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=96.64  E-value=0.0015  Score=41.61  Aligned_cols=44  Identities=18%  Similarity=0.431  Sum_probs=36.6

Q ss_pred             CCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhh
Q psy3995           6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKEL   49 (67)
Q Consensus         6 ~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~v   49 (67)
                      ++....-+=|.++|+|+...++|+|...+..|.+.|+++.++.-
T Consensus        62 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlW  105 (171)
T 2nny_A           62 SGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRW  105 (171)
T ss_dssp             CSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHH
T ss_pred             CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHH
Confidence            34455667788899999999999999999999999999888753

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21

Probab=96.59  E-value=0.0015  Score=38.22  Aligned_cols=46  Identities=17%  Similarity=0.336  Sum_probs=34.5

Q ss_pred             CCCCCcchHHHHHHHhhcCCC-CCCceEEcC-CCCeEEEechhhHHHh
Q psy3995           3 EVGTNVAAFLGKLWRMVEDPE-TNDLISWSE-NGQSFLIRNQSKFAKE   48 (67)
Q Consensus         3 ~~~~~~~~F~~kL~~~l~~~~-~~~~I~W~~-~G~~f~I~d~~~f~~~   48 (67)
                      .++++....-+=|.++|+||+ +.++|+|.+ ++.-|.+.|+++.++.
T Consensus         5 ~~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArl   52 (97)
T 1yo5_C            5 ALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARL   52 (97)
T ss_dssp             ----CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHH
T ss_pred             CCCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHH
Confidence            456667777888899999985 579999985 5678999999888775

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=95.91  E-value=0.0025  Score=40.05  Aligned_cols=42  Identities=17%  Similarity=0.398  Sum_probs=34.2

Q ss_pred             chHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhc
Q psy3995           9 AAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELL   50 (67)
Q Consensus         9 ~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vL   50 (67)
                      ...-+=|.++|.|++..++|+|...+.-|.+.|+++.++.--
T Consensus         6 i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG   47 (157)
T 1hbx_G            6 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWG   47 (157)
T ss_dssp             CCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHH
Confidence            344566788999999999999988888999999988877533

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=95.88  E-value=0.0078  Score=35.42  Aligned_cols=39  Identities=15%  Similarity=0.314  Sum_probs=29.7

Q ss_pred             hHHHHHHHhhcCCC-CCCceEEcCC-CCeEEEechhhHHHh
Q psy3995          10 AFLGKLWRMVEDPE-TNDLISWSEN-GQSFLIRNQSKFAKE   48 (67)
Q Consensus        10 ~F~~kL~~~l~~~~-~~~~I~W~~~-G~~f~I~d~~~f~~~   48 (67)
                      ...+=|.++|.|++ .+++|+|... ...|.+.|++..++.
T Consensus         6 ~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArl   46 (103)
T 3jtg_A            6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQL   46 (103)
T ss_dssp             SHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHH
T ss_pred             cHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHH
Confidence            44555778889987 5689999985 457888898877764

>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21

Probab=95.53  E-value=0.011  Score=34.03  Aligned_cols=36  Identities=17%  Similarity=0.373  Sum_probs=26.9

Q ss_pred             HHHHHhhcCCCCCCceEEcCCC-CeEEEe--chhhHHHh
Q psy3995          13 GKLWRMVEDPETNDLISWSENG-QSFLIR--NQSKFAKE   48 (67)
Q Consensus        13 ~kL~~~l~~~~~~~~I~W~~~G-~~f~I~--d~~~f~~~   48 (67)
                      +=|.++|+|+++.++|+|...+ ..|-+.  |+++.++.
T Consensus         6 qFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArl   44 (89)
T 1pue_E            6 QFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHR   44 (89)
T ss_dssp             HHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHH
T ss_pred             HHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHH
Confidence            4577889999999999998754 456554  67777664

>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}

Probab=93.66  E-value=0.0058  Score=37.29  Aligned_cols=36  Identities=17%  Similarity=0.486  Sum_probs=28.7

Q ss_pred             HHHHHhhcCCCCCCceEEcCCC-CeEEEechhhHHHh
Q psy3995          13 GKLWRMVEDPETNDLISWSENG-QSFLIRNQSKFAKE   48 (67)
Q Consensus        13 ~kL~~~l~~~~~~~~I~W~~~G-~~f~I~d~~~f~~~   48 (67)
                      +=|.++|+|+++.++|+|...+ .-|.+.|+++.++.
T Consensus         9 qFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArl   45 (128)
T 2lf8_A            9 DYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARL   45 (128)
Confidence            4467788999999999998854 47888899877664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	67
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	4e-29
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	8e-27

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score = 97.3 bits (242), Expect = 4e-29
 Identities = 44/63 (69%), Positives = 55/63 (87%)

Query: 5  GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
          G+ V AFL KLWR+V+D +TN LI W+++GQSF+I+NQ++FAKELLP  YKHNNMASFIR
Sbjct: 1  GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 65 QLN 67
          QLN
Sbjct: 61 QLN 63

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score = 91.1 bits (226), Expect = 8e-27
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query: 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
          AF+ KLW MV D      I WS +G+S ++ N+ +F +E+LP+Y+KH+N ASF+RQLN
Sbjct: 4  AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	67
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	99.96
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.96
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	97.33
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	97.32
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	96.92
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	96.71
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	96.57
d1wwxa1	94	E74-like factor 5 ese-2b {Human (Homo sapiens) [Ta	95.95
d1yo5c1	88	Sam pointed domain containing ets transcription SP	95.74
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	91.78

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.96  E-value=4.8e-31  Score=156.26  Aligned_cols=63  Identities=70%  Similarity=1.188  Sum_probs=60.9

Q ss_pred             CCCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995           5 GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN   67 (67)
Q Consensus         5 ~~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN   67 (67)
                      |+.+|+|+.|||+||+|++++++|+|++||++|+|+|+++|+++|||+||+|++|+||+||||
T Consensus         1 g~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn   63 (106)
T d1hksa_           1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLN   63 (106)
T ss_dssp             CTTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999997

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.96  E-value=5.8e-31  Score=153.24  Aligned_cols=60  Identities=48%  Similarity=0.995  Sum_probs=58.4

Q ss_pred             cchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995           8 VAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN   67 (67)
Q Consensus         8 ~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN   67 (67)
                      .|+|+.|||+||+|++++++|+|+++|++|+|+|+++|+++|||+||+|++|+||+||||
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn   61 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN   61 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHH
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999999997

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.0001  Score=41.85  Aligned_cols=42  Identities=14%  Similarity=0.346  Sum_probs=34.2

Q ss_pred             CcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHh
Q psy3995           7 NVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKE   48 (67)
Q Consensus         7 ~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~   48 (67)
                      +...--+=|.++|.|+++.++|+|+..+.-|.+.|+++.++.
T Consensus         4 g~~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~l   45 (98)
T d1flia_           4 GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARR   45 (98)
T ss_dssp             SSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHH
T ss_pred             CcccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHH
Confidence            334455667888999999999999888888999999988764

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=9.7e-05  Score=42.73  Aligned_cols=36  Identities=22%  Similarity=0.425  Sum_probs=31.3

Q ss_pred             HHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHh
Q psy3995          13 GKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKE   48 (67)
Q Consensus        13 ~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~   48 (67)
                      +=|.++|+|++..++|+|.+.+.-|.+.|+++.++.
T Consensus         5 ~FL~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~l   40 (110)
T d1awca_           5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQK   40 (110)
T ss_dssp             HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHH
T ss_pred             HHHHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHH
Confidence            347788999999999999999989999999988764

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0001  Score=40.93  Aligned_cols=34  Identities=21%  Similarity=0.562  Sum_probs=29.3

Q ss_pred             HHHhhcCCCCCCceEEcC-CCCeEEEechhhHHHh
Q psy3995          15 LWRMVEDPETNDLISWSE-NGQSFLIRNQSKFAKE   48 (67)
Q Consensus        15 L~~~l~~~~~~~~I~W~~-~G~~f~I~d~~~f~~~   48 (67)
                      |.++|+|+++.++|+|.+ ++..|.+.|+++.++.
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~l   41 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARL   41 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHH
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHH
Confidence            567788999999999998 6888999999888874

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00044  Score=41.45  Aligned_cols=39  Identities=21%  Similarity=0.481  Sum_probs=33.3

Q ss_pred             hHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHh
Q psy3995          10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKE   48 (67)
Q Consensus        10 ~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~   48 (67)
                      .--+=|.++|.|+++.++|+|...+..|.+.|+++.++.
T Consensus        41 ~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~l   79 (142)
T d1gvja_          41 QLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARR   79 (142)
T ss_dssp             CHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHH
T ss_pred             eHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHH
Confidence            455667888999999999999999888999999988764

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00023  Score=43.24  Aligned_cols=37  Identities=19%  Similarity=0.481  Sum_probs=31.7

Q ss_pred             HHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhh
Q psy3995          13 GKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKEL   49 (67)
Q Consensus        13 ~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~v   49 (67)
                      +=|.++|+|+++.++|+|...+.-|.+.|+++.++.-
T Consensus         8 ~FL~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lW   44 (155)
T d1hbxg_           8 QFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLW   44 (155)
T ss_dssp             HHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHH
T ss_pred             HHHHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHH
Confidence            3466788999999999999998899999999888753

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.00036  Score=38.81  Aligned_cols=36  Identities=17%  Similarity=0.413  Sum_probs=25.7

Q ss_pred             HHHHHhhcCCCCCCceEEcCCCCe-EEE--echhhHHHh
Q psy3995          13 GKLWRMVEDPETNDLISWSENGQS-FLI--RNQSKFAKE   48 (67)
Q Consensus        13 ~kL~~~l~~~~~~~~I~W~~~G~~-f~I--~d~~~f~~~   48 (67)
                      +=|.++|.||++.++|+|.+.+.+ |-+  .++++.++.
T Consensus         6 qFL~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~l   44 (88)
T d1puee_           6 QFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHR   44 (88)
T ss_dssp             HHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHH
T ss_pred             HHHHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHH
Confidence            346788899999999999877753 444  356666653

>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: E74-like factor 5 ese-2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0028  Score=35.42  Aligned_cols=35  Identities=17%  Similarity=0.390  Sum_probs=26.8

Q ss_pred             HHHHhhcCCC-CCCceEEcCCC-CeEEEechhhHHHh
Q psy3995          14 KLWRMVEDPE-TNDLISWSENG-QSFLIRNQSKFAKE   48 (67)
Q Consensus        14 kL~~~l~~~~-~~~~I~W~~~G-~~f~I~d~~~f~~~   48 (67)
                      =|.++|.||+ +.++|+|..-+ .-|.+.|+++.++.
T Consensus         7 FL~~LL~d~~~~~~~I~Wt~k~~g~Fkl~d~~~VA~l   43 (94)
T d1wwxa1           7 FVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKM   43 (94)
T ss_dssp             HHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHH
T ss_pred             HHHHHHcCCccCCCeEEEEcCCCcEEEEcCHHHHHHH
Confidence            4677888875 56899999854 47999999887764

>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Sam pointed domain containing ets transcription SPDEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0018  Score=35.90  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=27.9

Q ss_pred             HHHHHhhcCCC-CCCceEEcCCCC-eEEEechhhHHHh
Q psy3995          13 GKLWRMVEDPE-TNDLISWSENGQ-SFLIRNQSKFAKE   48 (67)
Q Consensus        13 ~kL~~~l~~~~-~~~~I~W~~~G~-~f~I~d~~~f~~~   48 (67)
                      +=|.++|.||+ +.++|+|.+.+. -|.+.|+++.++.
T Consensus         7 ~FL~~LL~d~~~~~~~I~Wt~~~~g~Fkl~~~~~VA~l   44 (88)
T d1yo5c1           7 QFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARL   44 (88)
T ss_dssp             HHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHH
T ss_pred             HHHHHHHcCccccCCCeEEECCCCceEEecCHHHHHHH
Confidence            34677788874 579999987765 6999999988764

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=91.78  E-value=0.069  Score=30.42  Aligned_cols=42  Identities=19%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             CcchHHHHHHHhhcCCCCC------CceEEcCCCCeEEEechhhHHHhhcc
Q psy3995           7 NVAAFLGKLWRMVEDPETN------DLISWSENGQSFLIRNQSKFAKELLP   51 (67)
Q Consensus         7 ~~~~F~~kL~~~l~~~~~~------~~I~W~~~G~~f~I~d~~~f~~~vLp   51 (67)
                      +...|+.|||.+|.=.+..      --|.|.+|+. |.| +...|++ +|-
T Consensus        26 ~~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~-lLg   73 (114)
T d1pp7u_          26 PNSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVAL-VMG   73 (114)
T ss_dssp             GGGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHH-HHT
T ss_pred             ccCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHH-HHC
Confidence            4578999999999533221      1388999986 655 8988987 543