Psyllid ID: psy4010

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------153
MSAWQVNLIADEHTHYQGCLFLQLNLRLSFLCIKKDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISVNKIKKKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKTPHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGPPRREVPILLRQTSFKALTEDIAVPGRDVGSISIFNGQFFLRGLTEGTVTAKVLSSRNRREKEDRIGSDEIPVCGVQYVGDYCTLCHRHGKQANLNDLSRLQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRKDKPCDKPHFKSYDDLINEALLESNIQHAKSKSENTLLAQYRHKRASRAEEELFDDNGSEERIPIDETELTHDLMDVEELNGDELNAVIERQIVETLLSPPIIVRAPSQSSSINTSFNYHHRKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLLALSYPVLKSTCPAQFKLLSPEHNWARFSRFRLHLVAASVHTSNQVAKHPNVHISRALGCSSPMSLRPGKIENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRSVSKQLVTSSIHMFVPNGLSKECKIGDKLGMNFECDKGFLGIIVSNRGQSIIHSSQVKTMSRNMYGIIVPIPSTTNLFTAWRTFASDSRSGGDVMSPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEMSAEDLERLNEERHGAIRLGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDKVEQSDSPHEAKHTARFGEVEQRGIALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVTDKEPYFGGPKPISLGGFIFVPLLCGDSSSPVYHCLDSCPPPQWNPALLRRSHKVCAGKNSRPRSIRLCVIDRGLKLFPAHTFRRRLSNGLSESALDLYQTDHISGKSHLDKNVNDFNLDNYVRAGLIGYEGITYEDFLPVSAAGIFQSNLSTNANHHIESQSSRHDFENALGCSVRDEMKLYEDLEKKSLQDCTFYFIR
ccccEEEEEcccccccccEEEEEEccccccEEEccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHcccccccccccccccccccccHHHHHHHHHHHccccccccccEEccccccccEEEEEcccccccccccccccccEEEEEEEEEEEEcccEEEEEHHHHHHcccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccEEEEEEccEEEEEEEEEcccccccEEEEEEEEEEEEEEEcccccEEcccccHHHHHHHccccccEEccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccEEEEEEEEEcccccccEEEEEEEcccccccccccccccEEccccccEEEccccccccccccccccHHHHccccHHHHHHHHHHccccHHHHHcccccccccccccccccccccccHHHHHccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEcccHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccEEEEEEcccccccccccccEEEEccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEccccHHHHHHHHEEEcEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccEEEEEcccEEEEEEEEEcccccccEEEcEEEEEEEEEEcccccccccccEEEEEEEccccccccccccccEEEEEcccccccccccHHHHccccEEEEEEEEEEEccccEEEEEEEEEccccccccccccccEEEccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHcccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHccccHHHHHHHHccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEEcccccHHHHHHHHHcHHHHHHHHHHcccccccccccccccccHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHc
cccHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccEEEEccccccHHEEEEEEcccccccEEccccccccHHHccccccccccccccHHHcccHHHHHHHHHEEEccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEccHHHHHHHHHHHEcEcccccccEEEEccccccccEEEEccHHHHccccEEEcccccccccEEccHEEHcccccccHHHHHHHHHHHHHHHHHHcccccHHcccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHEEEEcccEEEEEEcccEEEEEEEccccccccEEEEEEEEEEEEccccccccEEEcccEEEEcccccccccEEEcccccEEEEccccEEEEccccccEEEEEEcEEEEEEEccccccccccHHHHHHcccEEEEEEEEEEEcccccccccccccHHHEEcccccEEEEEEEccEEEEEcHccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHHEEEccccccEEHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHccccccccccEEEEEEccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEccHHHHEEEEEEEEEEEcccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccHEEEEcccEEEEEEcccEEEEEEEccccHcccEEEEEEEEEEEEccccccccEEEcccEEEEEcccccccEEEEEEcEEEEEEEccccccccccHHHHHHcccEEEEEEEEEEEEccccccccccccHHHEEccccEEEEEEEEcccEEEEEcccccccccHHHHHHHHHHHcccccccccccEEcccccccccccccccccccccccEEEcccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHcHHHcccEEEccHHHHHHHHHHHHHHccccccEEEcccccccccccccccccHHHHcccccEEHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcHHcccccccEEEEcccccccccEEEEEccEEEcccccccccEEEEEEEcccEEccccHHHHHHHHHHHHccccccccHcccHHHHHHcccccccHHHHHHcccEEEccEEEcccccccHHHHHHcccccHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccEEEEc
MSAWQVNLIADEHTHYQGCLFLQLNLRLSFLCikkdlpdqvylsglpdseclalyyfkskykvpilytHHFLCvlkivprcylpisvnkikkklrgspfyrkLKKRAidkngtgniiQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIvcfktphinhltpstldIDRVQDRMVAQMsrhgscvpkaviegpprrevpILLRQTSFKALtediavpgrdvgsisifNGQFFLRGLTEGTVTAKVLSsrnrrekedrigsdeipvcgvqyvgdyctlchrhgkqanLNDLSRLQAFMTGLVfakvarpkqrtqTLLFSRTAVINQRDGHLCLMFrvgdmreksHIIGASVKAYLVKARttaegevlnPFLSELKVILDAVLQStefssttstyvragtpyqlhidqydsdifllwPTIVvhrideesplYDMAAKKLLTEKFEIIAILegttestgqttqaktsylpseilwghrfeplvrkdkpcdkphfksyDDLINEALLESNIQHAKSKSENTLLAQYRHKRASRAeeelfddngseeripidetelthdlmdveelngDELNAVIERQIVETllsppiivrapsqsssintsfnyhhrklrgspfyrKLKKRAidkngtgniiQINISKRRRAFLQDIFTTLVDIQWRWTMLLALsypvlkstcpaqfkllspehnwaRFSRFRLHLVAASVhtsnqvakhpnvhisralgcsspmslrpgkienrygsfseqlalsypvlKSFACIWWLLAYthgdvlsenqnnpqfvpcviGVNSFASSLLFSIEtqhtigygsrstttecpeAIWLMCVQSIVGTIIQAFMTGLVFakvarpkqrtqTLLFSRTAVINQRDGHLCLMFrvgdmreksHIIGASVKAYLVKARttaegevlNPFLSELKLHIdqydsdifllwPTIVvhrideesplYDMAAKKLLTEKFEIIAILegttestgqttqaktsylpseilwghrfeplVRSVSKQLVTSsihmfvpnglskeckigdklgmnfecdkgfLGIIvsnrgqsiihssqvktmsrnmygiivpipsttnlFTAWRtfasdsrsggdvmspnAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDtlansgkldemsAEDLERLNEERhgairlgtpeELYNIRRLFSvmnmhpvgyydlstagvpvhstafRSIDayalnqspfRVFTSLLRLELIEdkveqsdspheakhtaRFGEVEQRGIALTAKGRQLYDYLLDKtrgsfkgipdetnsKLYMENLAsnfsvfpddlNTLRKEKLAYFNYYvtdkepyfggpkpislggfifvpllcgdssspvyhcldscpppqwnpallrrshkvcagknsrprsiRLCVIDrglklfpahTFRRrlsnglsesaldlyqtdhisgkshldknvndfnldnyvRAGLigyegityedflpvsaagifqsnlstnanhhiesqssrhdfenalgcsvrdeMKLYEDLEKkslqdctfyfir
MSAWQVNLIADEHTHYQGCLFLQLNLRLSFLCIKKDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPIsvnkikkklrgspfyrklkkraidkngtgniiqiniskrRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKtphinhltpstldidRVQDRMVAQMsrhgscvpkaviegpprrevpILLRQTSFKALTEDIAVPGRDVGSISIFNGQfflrgltegtvtakvlssrnrrekedrigsdeipvcgVQYVGDYCTLCHRHGKQANLNDLSRLQAFMTGLVFAKVARPKQRTQTLlfsrtavinqrdGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILegttestgqttqaktsylpseilWGHRFEPLVRKDKPCDKPHFKSYDDLINEALLESNIQHAKSKSENTLLAQYRHKRasraeeelfddngseeripideteltHDLMDVEELNGDELNAVIERQIVETLLSPPIIVRApsqsssintsfnyhhrklrgspfyrKLKKraidkngtgniiqiniskrRRAFLQDIFTTLVDIQWRWTMLLALSYPVLKSTCPAQFKLLSPEHNWARFSRFRLHLVAASVHtsnqvakhpnvHISRALGCSSPMSLRPGKIENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLlfsrtavinqrdGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILegttestgqttqAKTSYLPSEILWGHRFEPLVRSVSKQLVTSSIHMFVPNGLSKECKIGDKLGMNFECDKGFLGIIVSNRGQSIIHSSQVKTMSRNMYGIIVPIPSTTNLFTAWRTFASdsrsggdvmspNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTlansgkldemSAEDLERLNEerhgairlgtpeeLYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDkveqsdspheakhtarfgeveqrgiALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVTDKEPYFGGPKPISLGGFIFVPLLCGDSSSPVYHCLDSCPPPQWNPALLRRSHKVcagknsrprsirlcVIDRGLKLFPAHTFRRRLSNGLSESALDLYQTDHISGKSHLDKNVNDFNLDNYVRAGLIGYEGITYEDFLPVSAAGIFQSNLSTNANHHIesqssrhdfeNALGCSVRDEMKLYEDlekkslqdctfyfir
MSAWQVNLIADEHTHYQGClflqlnlrlsflCIKKDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISVNKIKKKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKTPHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGPPRREVPILLRQTSFKALTEDIAVPGRDVGSISIFNGQFFLRGLTEGTVTAKVLSSRNRREKEDRIGSDEIPVCGVQYVGDYCTLCHRHGKQANLNDLSRLQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILegttestgqttqAKTSYLPSEILWGHRFEPLVRKDKPCDKPHFKSYDDLINEALLESNIQHAKSKSENTLLAQYRHKRASRAEEELFDDNGSEERIPIDETELTHDLMDVEELNGDELNAVIERQIVETLLSPPIIVRAPSQSSSINTSFNYHHRKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLLALSYPVLKSTCPAQFKLLSPEHNWARFSRFRLHLVAASVHTSNQVAKHPNVHISRALGCSSPMSLRPGKIENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILegttestgqttqAKTSYLPSEILWGHRFEPLVRSVSKQLVTSSIHMFVPNGLSKECKIGDKLGMNFECDKGFLGIIVSNRGQSIIHSSQVKTMSRNMYGIIVPIPSTTNLFTAWRTFASDSRSGGDVMSPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEMSAEDLERLNEERHGAIRLGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDKVEQSDSPHEAKHTARFGEVEQRGIALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVTDKEPYFGGPKPISLGGFIFVPLLCGDSSSPVYHCLDSCPPPQWNPALLRRSHKVCAGKNSRPRSIRLCVIDRGLKLFPAHTFRRRLSNGLSESALDLYQTDHISGKSHLDKNVNDFNLDNYVRAGLIGYEGITYEDFLPVSAAGIFQSNLSTNANHHIESQSSRHDFENALGCSVRDEMKLYEDLEKKSLQDCTFYFIR
***WQVNLIADEHTHYQGCLFLQLNLRLSFLCIKKDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISVNKIKKKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKTPHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGPPRREVPILLRQTSFKALTEDIAVPGRDVGSISIFNGQFFLRGLTEGTVTAKVL**************DEIPVCGVQYVGDYCTLCHRHGKQANLNDLSRLQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVL****************TPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTT*********KTSYLPSEILWGHRFEPLVRKDKPCDKPHFKSYDDLINEALL***************************************************LMDVEELNGDELNAVIERQIVETLLSPPIIVRA********TSFNYHHRKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLLALSYPVLKSTCPAQFKLLSPEHNWARFSRFRLHLVAASVHTSNQVAKHPNVHISRALGC**********IENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTE*******AKTSYLPSEILWGHRFEPLVRSVSKQLVTSSIHMFVPNGLSKECKIGDKLGMNFECDKGFLGIIVSNRGQSIIHSSQVKTMSRNMYGIIVPIPSTTNLFTAWRTFA******************************VPQYSTLLELVRQVNLDTL***********************AIRLGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIE********************VEQRGIALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVTDKEPYFGGPKPISLGGFIFVPLLCGDSSSPVYHCLDSCPPPQWNPALLRRSHKVCAGKNSRPRSIRLCVIDRGLKLFPAHTFRRRLSNGLSESALDLYQTDHISGKSHLDKNVNDFNLDNYVRAGLIGYEGITYEDFLPVSAAGIFQSNL*******************ALGCSVRDEMKLYEDLEKKSLQDCTFYFI*
***WQVNLIADEHTHYQGCLFLQLNLRLSFLCIKKDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISV**********PFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKTPHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGPPRREVPILLRQTSFKALTEDIAVPGRDVGSISIFNGQFFLRGLTEGTVTAKVLSSRNRREKEDRIGSDEIPVCGVQYVGDYCTLCHRHGKQANLNDLSRLQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRKDKPCDKPHFKSYDDLINEA*********************************************************************E****************************************************************RRAFLQDIFTTLVDIQWRWTMLLALSYPVLKSTCPAQFKLLSPEHNWARFSRFRLHLVAASVHTSNQVAKHPNVHISRALGCSSPMSLRPGKIENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRSVSKQLVTSSIHMFVPN****************************************************************************VMSPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTL*****************NEERHGAIRLGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDKVEQSDSPHEAKHTARFGEVEQRGIALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVTDKEPYFGGPKPISLGGFIFVPLLCGDSSSPVYHCLDSCPPPQWNPALLRRSHKVCAGKNSRPRSIRLCVIDRGLKLFPAHTFRRRLSNGLSESALDLYQTDHISGKSHL****NDFNLDNYVRAGLIGYEGITYEDFLPVSAAGIFQ********************ENALGCSVRDEMKLYEDLEKKSLQDCTFYFIR
MSAWQVNLIADEHTHYQGCLFLQLNLRLSFLCIKKDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISVNKIKKKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKTPHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGPPRREVPILLRQTSFKALTEDIAVPGRDVGSISIFNGQFFLRGLTEGTVTAKV***********RIGSDEIPVCGVQYVGDYCTLCHRHGKQANLNDLSRLQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTT**********TSYLPSEILWGHRFEPLVRKDKPCDKPHFKSYDDLINEALLESNIQHAKSKSENTLLAQYRHKRASRAEEELFDDNGSEERIPIDETELTHDLMDVEELNGDELNAVIERQIVETLLSPPIIVRAPSQSSSINTSFNYHHRKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLLALSYPVLKSTCPAQFKLLSPEHNWARFSRFRLHLVAASVHTSNQVAKHPNVHISRALGCSSPMSLRPGKIENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTT**********TSYLPSEILWGHRFEPLVRSVSKQLVTSSIHMFVPNGLSKECKIGDKLGMNFECDKGFLGIIVSNRGQSIIHSSQVKTMSRNMYGIIVPIPSTTNLFTAWRTFASDSRSGGDVMSPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEMSAEDLERLNEERHGAIRLGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDK************TARFGEVEQRGIALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVTDKEPYFGGPKPISLGGFIFVPLLCGDSSSPVYHCLDSCPPPQWNPALLRRSHKVCAGKNSRPRSIRLCVIDRGLKLFPAHTFRRRLSNGLSESALDLYQTDHISGKSHLDKNVNDFNLDNYVRAGLIGYEGITYEDFLPVSAAGIFQSNLSTNANHHIESQSSRHDFENALGCSVRDEMKLYEDLEKKSLQDCTFYFIR
*SAWQVNLIADEHTHYQGCLFLQLNLRLSFLCIKKDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISVNKIKKKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKTPHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGPPRREVPILLRQTSFKALTEDIAVPGRDVGSISIFNGQFFLRGLTEGTVTAKVLSSRNRREKEDRIGSDEIPVCGVQYVGDYCTLCHRHGKQANLNDLSRLQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRKDKPCDKPHFKSYDDLINEALLESNIQHAKSKS**TLLAQ******************************************************ETLLSPPIIVRAPSQSSS***S****H**LRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLLALSYPVLK*******************SRFRLHLVAASVHTSNQVAKHPNVHISRALGCSSPMSLRPGKIENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRSVSKQLVTSSIHMFVPNGLSKECKIGDKLGMNFECDKGF**IIV*********************GIIVPIPSTTNLFTAWRTFASDSRSGGDVMSPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEMSAEDLERLNEERHGAIRLGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDKVEQSDSPHEAKHTARFGEVEQRGIALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVTDKEPYFGGPKPISLGGFIFVPLLCGDSSSPVYHCLDSCPPPQWNPALLRRSHKVCAGKNSRPRSIRLCVIDRGLKLFPAHTFRRRLSNGLSESALDLYQTDHISGKSHLDKNVNDFNLDNYVRAGLIGYEGITYEDFLPVSAAGIFQSNLSTNANHHIESQSSRHDFENALGCSVRDEMKLYEDLEKKSLQDCTFYFIR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSAWQVNLIADEHTHYQGCLFLQLNLRLSFLCIKKDLPDQVYLSGLPDSECLALYYFKSKYKVPILYTHHFLCVLKIVPRCYLPISVNKIKKKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKTPHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGPPRREVPILLRQTSFKALTEDIAVPGRDVGSISIFNGQFFLRGLTEGTVTAKVLSSRNRREKEDRIGSDEIPVCGVQYVGDYCTLCHRHGKQANLNDLSRLQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRKDKPCDKPHFKSYDDLINEALLESNIQHAKSKSENTLLAQYRHKRASRAEEELFDDNGSEERIPIDETELTHDLMDVEELNGDELNAVIERQIVETLLSPPIIVRAPSQSSSINTSFNYHHRKLRGSPFYRKLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLLALSYPVLKSTCPAQFKLLSPEHNWARFSRFRLHLVAASVHTSNQVAKHPNVHISRALGCSSPMSLRPGKIENRYGSFSEQLALSYPVLKSFACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVRSVSKQLVTSSIHMFVPNGLSKECKIGDKLGMNFECDKGFLGIIVSNRGQSIIHSSQVKTMSRNMYGIIVPIPSTTNLFTAWRTFASDSRSGGDVMSPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEMSAEDLERLNEERHGAIRLGTPEELYNIRRLFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDKVEQSDSPHEAKHTARFGEVEQRGIALTAKGRQLYDYLLDKTRGSFKGIPDETNSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVTDKEPYFGGPKPISLGGFIFVPLLCGDSSSPVYHCLDSCPPPQWNPALLRRSHKVCAGKNSRPRSIRLCVIDRGLKLFPAHTFRRRLSNGLSESALDLYQTDHISGKSHLDKNVNDFNLDNYVRAGLIGYEGITYEDFLPVSAAGIFQSNLSTNANHHIESQSSRHDFENALGCSVRDEMKLYEDLEKKSLQDCTFYFIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1527 2.2.26 [Sep-21-2011]
P52186427 Inward rectifier potassiu no N/A 0.151 0.543 0.514 2e-65
P48545419 G protein-activated inwar yes N/A 0.153 0.558 0.481 3e-65
P48548419 G protein-activated inwar yes N/A 0.153 0.558 0.481 4e-65
P52189445 Inward rectifier potassiu no N/A 0.153 0.525 0.511 8e-65
P49658425 G protein-activated inwar N/A N/A 0.151 0.545 0.481 1e-64
P48544419 G protein-activated inwar yes N/A 0.153 0.558 0.476 1e-64
P48542425 G protein-activated inwar no N/A 0.153 0.550 0.481 1e-64
P48051423 G protein-activated inwar no N/A 0.151 0.548 0.481 1e-64
P48550425 G protein-activated inwar no N/A 0.151 0.545 0.481 2e-64
O02670419 G protein-activated inwar yes N/A 0.153 0.558 0.481 2e-64
>sp|P52186|IRK2_CHICK Inward rectifier potassium channel 2 OS=Gallus gallus GN=KCNJ2 PE=2 SV=1 Back     alignment and function desciption
 Score =  252 bits (643), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/237 (51%), Positives = 169/237 (71%), Gaps = 5/237 (2%)

Query: 776  FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
            F C++WL+A  HGD+  ENQ N +  PCV  V+SF ++ LFSIETQ TIGYG R  T EC
Sbjct: 99   FGCVFWLIALLHGDL--ENQENNK--PCVSQVSSFTAAFLFSIETQTTIGYGFRCVTDEC 154

Query: 836  PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
            P A++++  QSIVG II AF+ G V AK+A+PK+R +TL+FS  AV+  RDG LCLM+RV
Sbjct: 155  PIAVFMVVFQSIVGCIIDAFIIGAVMAKMAKPKKRNETLVFSHNAVVAMRDGKLCLMWRV 214

Query: 896  GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRI 955
            G++R KSH++ A V+A L+K+R T+EGE +     ++ +  D     IFL+ P  +VH I
Sbjct: 215  GNLR-KSHLVEAHVRAQLLKSRITSEGEYIPLDEIDINVGFDSGIDRIFLVSPITIVHEI 273

Query: 956  DEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLV 1012
            DE+SPLYD++ + +    FEI+ ILEG  E+T  TTQ ++SYL +EILWGHR+EP++
Sbjct: 274  DEDSPLYDLSKQDMDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVL 330
Probably participates in establishing action potential waveform and excitability of neuronal and muscle tissues. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by external barium.
Gallus gallus (taxid: 9031)
>sp|P48545|IRK5_MOUSE G protein-activated inward rectifier potassium channel 4 OS=Mus musculus GN=Kcnj5 PE=2 SV=3 Back     alignment and function description
>sp|P48548|IRK5_RAT G protein-activated inward rectifier potassium channel 4 OS=Rattus norvegicus GN=Kcnj5 PE=1 SV=2 Back     alignment and function description
>sp|P52189|IRK4_MOUSE Inward rectifier potassium channel 4 OS=Mus musculus GN=Kcnj4 PE=1 SV=1 Back     alignment and function description
>sp|P49658|IRK6_MESAU G protein-activated inward rectifier potassium channel 2 OS=Mesocricetus auratus GN=KCNJ6 PE=2 SV=1 Back     alignment and function description
>sp|P48544|IRK5_HUMAN G protein-activated inward rectifier potassium channel 4 OS=Homo sapiens GN=KCNJ5 PE=1 SV=2 Back     alignment and function description
>sp|P48542|IRK6_MOUSE G protein-activated inward rectifier potassium channel 2 OS=Mus musculus GN=Kcnj6 PE=1 SV=1 Back     alignment and function description
>sp|P48051|IRK6_HUMAN G protein-activated inward rectifier potassium channel 2 OS=Homo sapiens GN=KCNJ6 PE=1 SV=1 Back     alignment and function description
>sp|P48550|IRK6_RAT G protein-activated inward rectifier potassium channel 2 OS=Rattus norvegicus GN=Kcnj6 PE=2 SV=1 Back     alignment and function description
>sp|O02670|IRK5_PIG G protein-activated inward rectifier potassium channel 4 OS=Sus scrofa GN=KCNJ5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1527
328782779846 PREDICTED: hypothetical protein LOC40846 0.154 0.278 0.659 5e-91
380022325815 PREDICTED: uncharacterized protein LOC10 0.161 0.303 0.635 1e-90
383865635816 PREDICTED: uncharacterized protein LOC10 0.157 0.295 0.635 3e-90
340724991833 PREDICTED: hypothetical protein LOC10064 0.161 0.296 0.631 4e-90
350398254833 PREDICTED: hypothetical protein LOC10075 0.161 0.296 0.631 4e-90
328724528452 PREDICTED: ATP-sensitive inward rectifie 0.142 0.480 0.597 3e-89
307207104462 ATP-sensitive inward rectifier potassium 0.157 0.521 0.647 4e-89
328724526369 PREDICTED: ATP-sensitive inward rectifie 0.142 0.588 0.597 8e-89
239790242369 ACYPI001807 [Acyrthosiphon pisum] 0.142 0.588 0.593 2e-88
170064403476 inwardly rectifying k+ channel [Culex qu 0.154 0.495 0.643 3e-88
>gi|328782779|ref|XP_392011.2| PREDICTED: hypothetical protein LOC408463 [Apis mellifera] Back     alignment and taxonomy information
 Score =  343 bits (880), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 159/241 (65%), Positives = 195/241 (80%), Gaps = 5/241 (2%)

Query: 776  FACIWWLLAYTHGDV----LSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRST 831
            FA IWWL+A++HGD     L   Q    + PCV  + SF S  LFSIETQHTIGYGSR T
Sbjct: 147  FAVIWWLIAFSHGDFEERHLPPYQIENNWTPCVNNIFSFTSCFLFSIETQHTIGYGSRGT 206

Query: 832  TTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCL 891
            T ECPEAI++MC+QSIVG +IQAFM G+VFAK++RPKQRTQTLLFSR AVI QRDG LCL
Sbjct: 207  TEECPEAIFVMCIQSIVGVMIQAFMVGIVFAKMSRPKQRTQTLLFSRNAVICQRDGELCL 266

Query: 892  MFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIV 951
            MFRVGDMR KSHIIGA+++A L+++RTT EGEVL+    EL +  D  + ++F +WPT +
Sbjct: 267  MFRVGDMR-KSHIIGAAIRAQLIRSRTTKEGEVLSQNQQELAVGTDGQNGNLFFIWPTTI 325

Query: 952  VHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPL 1011
            VHRI+EESP Y+M+A+ +LTE+FEI+AILEGT ESTGQTTQA++SYLP EILWG+RFEP+
Sbjct: 326  VHRINEESPFYNMSAEDMLTERFEIVAILEGTIESTGQTTQARSSYLPQEILWGYRFEPM 385

Query: 1012 V 1012
            V
Sbjct: 386  V 386

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380022325|ref|XP_003695000.1| PREDICTED: uncharacterized protein LOC100871820 [Apis florea] Back     alignment and taxonomy information
>gi|383865635|ref|XP_003708278.1| PREDICTED: uncharacterized protein LOC100878943 [Megachile rotundata] Back     alignment and taxonomy information
>gi|340724991|ref|XP_003400859.1| PREDICTED: hypothetical protein LOC100646926 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350398254|ref|XP_003485137.1| PREDICTED: hypothetical protein LOC100750019 [Bombus impatiens] Back     alignment and taxonomy information
>gi|328724528|ref|XP_001943660.2| PREDICTED: ATP-sensitive inward rectifier potassium channel 12-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307207104|gb|EFN84913.1| ATP-sensitive inward rectifier potassium channel 12 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328724526|ref|XP_003248173.1| PREDICTED: ATP-sensitive inward rectifier potassium channel 12-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|239790242|dbj|BAH71694.1| ACYPI001807 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|170064403|ref|XP_001867511.1| inwardly rectifying k+ channel [Culex quinquefasciatus] gi|167881801|gb|EDS45184.1| inwardly rectifying k+ channel [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1527
FB|FBgn0039081453 Irk2 "Inwardly rectifying pota 0.154 0.520 0.556 9.6e-85
FB|FBgn0265042555 Irk1 "Inwardly rectifying pota 0.154 0.425 0.506 5.4e-79
UNIPROTKB|Q4KEJ1499 PFL_2235 "Uncharacterized prot 0.098 0.302 0.532 4.7e-68
UNIPROTKB|P52186427 KCNJ2 "Inward rectifier potass 0.149 0.536 0.495 8.5e-67
ZFIN|ZDB-GENE-091118-79421 si:ch211-23l10.2 "si:ch211-23l 0.151 0.551 0.504 8.6e-67
UNIPROTKB|F1NHE9429 KCNJ12 "Uncharacterized protei 0.161 0.575 0.482 1.1e-66
UNIPROTKB|F1NI76424 KCNJ4 "Uncharacterized protein 0.154 0.556 0.510 1.4e-66
UNIPROTKB|O42229427 IRK1 "Inward rectifier potassi 0.149 0.536 0.491 1.8e-66
UNIPROTKB|F1NK63421 KCNJ8 "Uncharacterized protein 0.153 0.555 0.487 1.7e-65
MGI|MGI:104755419 Kcnj5 "potassium inwardly-rect 0.153 0.558 0.451 2.6e-65
FB|FBgn0039081 Irk2 "Inwardly rectifying potassium channel 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 711 (255.3 bits), Expect = 9.6e-85, Sum P(2) = 9.6e-85
 Identities = 134/241 (55%), Positives = 173/241 (71%)

Query:   776 FACIWWLLAYTHGDV----LSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRST 831
             FA IWWL+ YTHGD+    L ENQ    + PCV  ++ F S  LFSIETQHTIGYG R+T
Sbjct:   151 FALIWWLIIYTHGDLEEPHLPENQEESGWAPCVSAIDGFTSCFLFSIETQHTIGYGVRTT 210

Query:   832 TTECPEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCL 891
             + ECPEAI++MC QSI G +  AFM G+VFAK+ R KQR QTLLFS+ AVI QRDG L L
Sbjct:   211 SPECPEAIFMMCFQSIYGVMSSAFMAGIVFAKMTRAKQRAQTLLFSKHAVICQRDGTLSL 270

Query:   892 MFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIV 951
             MFRVGDMR KSHIIGA V+A L++ ++T EGEV+  + +EL++  D   SD+F +WP ++
Sbjct:   271 MFRVGDMR-KSHIIGAGVRAQLIRTKSTKEGEVMTQYFTELEIGTDDSGSDLFFIWPMVI 329

Query:   952 VHRIDEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPL 1011
              H+IDE SPLY++ A  +L +KFEI+ IL            A++SY+ +EILWGHRF+P+
Sbjct:   330 EHKIDENSPLYNLNATDMLQDKFEIVVILEGTVESTGQSTQARSSYINTEILWGHRFDPV 389

Query:  1012 V 1012
             V
Sbjct:   390 V 390
GO:0015467 "G-protein activated inward rectifier potassium channel activity" evidence=ISS
GO:0005242 "inward rectifier potassium channel activity" evidence=IDA;NAS
GO:0006813 "potassium ion transport" evidence=IDA
GO:0042391 "regulation of membrane potential" evidence=IDA
GO:0016021 "integral to membrane" evidence=IDA
GO:0048812 "neuron projection morphogenesis" evidence=IMP
GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI
GO:0035220 "wing disc development" evidence=IMP
FB|FBgn0265042 Irk1 "Inwardly rectifying potassium channel" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KEJ1 PFL_2235 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|P52186 KCNJ2 "Inward rectifier potassium channel 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091118-79 si:ch211-23l10.2 "si:ch211-23l10.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NHE9 KCNJ12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NI76 KCNJ4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O42229 IRK1 "Inward rectifier potassium channel 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NK63 KCNJ8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:104755 Kcnj5 "potassium inwardly-rectifying channel, subfamily J, member 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1527
pfam01007336 pfam01007, IRK, Inward rectifier potassium channel 1e-110
COG5383295 COG5383, COG5383, Uncharacterized protein conserve 1e-67
pfam01007336 pfam01007, IRK, Inward rectifier potassium channel 3e-67
pfam07063288 pfam07063, DUF1338, Domain of unknown function (DU 1e-25
pfam07063288 pfam07063, DUF1338, Domain of unknown function (DU 6e-18
COG5383295 COG5383, COG5383, Uncharacterized protein conserve 2e-17
COG5383295 COG5383, COG5383, Uncharacterized protein conserve 2e-15
pfam01007336 pfam01007, IRK, Inward rectifier potassium channel 2e-13
pfam01007336 pfam01007, IRK, Inward rectifier potassium channel 1e-09
pfam07063288 pfam07063, DUF1338, Domain of unknown function (DU 2e-04
>gnl|CDD|216239 pfam01007, IRK, Inward rectifier potassium channel Back     alignment and domain information 
 Score =  353 bits (908), Expect = e-110
 Identities = 136/237 (57%), Positives = 170/237 (71%), Gaps = 3/237 (1%)

Query: 776  FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
            F  IWWL+A+ HGD+      N    PCV+ V+SF S+ LFSIETQ TIGYG R  T EC
Sbjct: 52   FGTIWWLIAFAHGDLEPAPDANHT--PCVMNVHSFTSAFLFSIETQTTIGYGFRCITEEC 109

Query: 836  PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
            P AI+L+ +QSI+G II AFM G +FAK+ARPK+R +TL+FS  AVI  RDG LCLMFRV
Sbjct: 110  PLAIFLLILQSILGCIINAFMIGCIFAKMARPKKRAETLIFSHHAVIALRDGKLCLMFRV 169

Query: 896  GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRI 955
            GD+R KSH++ A V+A L+K+R T EGE +     ++K+  D     IFL+ P  + H I
Sbjct: 170  GDLR-KSHLVEAHVRAQLLKSRVTPEGEFIPLHQIDIKVGFDTGSDRIFLVSPLTICHVI 228

Query: 956  DEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLV 1012
            DE SPLYD++A+ L +  FEI+ ILEGT ESTG T QA+TSYLP EILWGHRFEP+V
Sbjct: 229  DERSPLYDLSAQDLKSADFEIVVILEGTVESTGMTCQARTSYLPEEILWGHRFEPVV 285

Length = 336
>gnl|CDD|227673 COG5383, COG5383, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|216239 pfam01007, IRK, Inward rectifier potassium channel Back     alignment and domain information
>gnl|CDD|219283 pfam07063, DUF1338, Domain of unknown function (DUF1338) Back     alignment and domain information
>gnl|CDD|219283 pfam07063, DUF1338, Domain of unknown function (DUF1338) Back     alignment and domain information
>gnl|CDD|227673 COG5383, COG5383, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|227673 COG5383, COG5383, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|216239 pfam01007, IRK, Inward rectifier potassium channel Back     alignment and domain information
>gnl|CDD|216239 pfam01007, IRK, Inward rectifier potassium channel Back     alignment and domain information
>gnl|CDD|219283 pfam07063, DUF1338, Domain of unknown function (DUF1338) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1527
KOG3827|consensus400 100.0
KOG3827|consensus400 100.0
COG5383295 Uncharacterized protein conserved in bacteria [Fun 100.0
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 100.0
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 100.0
PF07063302 DUF1338: Domain of unknown function (DUF1338); Int 99.96
COG5383295 Uncharacterized protein conserved in bacteria [Fun 99.39
PF07063302 DUF1338: Domain of unknown function (DUF1338); Int 98.89
KOG3713|consensus477 98.38
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 98.31
KOG1545|consensus507 97.73
PLN03192823 Voltage-dependent potassium channel; Provisional 97.6
KOG1419|consensus654 97.58
PRK10537393 voltage-gated potassium channel; Provisional 97.54
KOG4390|consensus632 97.28
KOG0498|consensus727 96.64
KOG1418|consensus433 96.38
KOG3684|consensus489 95.12
KOG4404|consensus350 93.9
KOG0500|consensus536 93.64
KOG1418|consensus433 92.37
PF00520200 Ion_trans: Ion transport protein calcium channel s 90.65
KOG4404|consensus350 88.81
KOG1420|consensus1103 87.67
KOG0499|consensus815 87.08
KOG0501|consensus971 84.65
>KOG3827|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.1e-106  Score=906.26  Aligned_cols=322  Identities=43%  Similarity=0.726  Sum_probs=295.7

Q ss_pred             ccccceeccCCceeeEeccchhhhhhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhcccc
Q psy4010         102 KLKKRAIDKNGTGNIIQINISKRRRAFLQDIFTTLVDIQWRWTMLVCSMGFLLSWIVSYDTYQTLLDTHSLVADIVCFKT  181 (1527)
Q Consensus       102 ~~r~R~V~K~G~cNV~~~nv~~~~~ryl~DiFTTLVDlrWRw~LliF~~sFl~SWlvFa~iyw~La~~H~llaDIv~f~~  181 (1527)
                      |.|+|+|.|||+|||+++|+++++.|||+||||||||+||||||++|+++|++||++||.+||+||+.||++..   .  
T Consensus        23 r~r~R~v~K~G~cNV~~~nv~~~~~rYl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~---~--   97 (400)
T KOG3827|consen   23 RKRRRFVKKDGHCNVQFKNVPRKRLRYLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEP---D--   97 (400)
T ss_pred             hhhhhhcccCCceeEEEcCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc---C--
Confidence            56999999999999999999999999999999999999999999999999999999999999999999985531   0  


Q ss_pred             CcccCCCCCCcchhhHHHHHhhhcccCCcccccccccCCCCCCcceeeeeccccccccccccCCCCccceeeeeeeeEEE
Q psy4010         182 PHINHLTPSTLDIDRVQDRMVAQMSRHGSCVPKAVIEGPPRREVPILLRQTSFKALTEDIAVPGRDVGSISIFNGQFFLR  261 (1527)
Q Consensus       182 ~hiNHltPrtLDId~~q~~m~~~~~~~g~cv~k~~ieGPp~~~~PillrqtSF~Al~e~i~f~~~~~g~~s~f~gaFlfs  261 (1527)
                          |  |.               .+|+||+.|                ++||                    +||||||
T Consensus        98 ----~--~~---------------~~~tpCV~n----------------V~sf--------------------~sAFLFS  120 (400)
T KOG3827|consen   98 ----P--PG---------------ENHTPCVMN----------------VHSF--------------------TSAFLFS  120 (400)
T ss_pred             ----C--CC---------------cCCCcceee----------------ccch--------------------hhhheee
Confidence                0  10               245666554                5555                    5799999


Q ss_pred             eeeeeeeeeeeccccccccccccccccccccceeeeeccccchhhh-hhhhhhhhhHHHHHHHHHHHHHhhhcCCCCCCC
Q psy4010         262 GLTEGTVTAKVLSSRNRREKEDRIGSDEIPVCGVQYVGDYCTLCHR-HGKQANLNDLSRLQAFMTGLVFAKVARPKQRTQ  340 (1527)
Q Consensus       262 ~eTqtTig~~~~~~~~~~Etq~tigteecp~yG~r~vt~~C~~~i~-l~~Q~ilg~~~lIdAfmtGLVFAKfSRPkkRa~  340 (1527)
                      +|||||||                       ||+|+||++||+||+ +++|+|+|  ++|||||+|++|||||||||||+
T Consensus       121 iETQtTIG-----------------------YG~R~vTeeCP~aI~ll~~Q~I~g--~ii~afm~G~i~aKiarPkKRAe  175 (400)
T KOG3827|consen  121 IETQTTIG-----------------------YGFRYVTEECPEAIFLLVLQSILG--VIINAFMVGAIFAKIARPKKRAE  175 (400)
T ss_pred             eeeeeeee-----------------------ccccccCccChHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCchhhhh
Confidence            99998877                       799999999999999 57999998  99999999999999999999999


Q ss_pred             eeeeccceEEeecCCeEEEEEEEeeCCCCceeeecEEEEEEEEeeecCCCcccccchhhHHHHHhhhhcccccccccccc
Q psy4010         341 TLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDAVLQSTEFSSTTSTY  420 (1527)
Q Consensus       341 TI~FSk~AVIs~rDGklcLMFRVgNlR~ks~LIea~VRa~Lir~~~T~EGE~i~~~~~eLkL~ld~~~q~~e~~~~ts~~  420 (1527)
                      ||+||++||||.||||+||||||||+| |||||||+||++|++.++|+|||+++.++.++++                  
T Consensus       176 Tl~FS~~AVI~~RDGkLCLmfRVgdlR-kShliea~Vraqlik~~~T~EGE~ipl~q~di~v------------------  236 (400)
T KOG3827|consen  176 TLIFSDHAVIALRDGKLCLMFRVGDLR-KSHLIEAHVRAQLIKTRVTKEGEVIPLHQTDIDV------------------  236 (400)
T ss_pred             eeeeccceEEEeeCCceEEEEEecCcc-ccceeeEEEEEEEEEEcccCCcceeecceEEeec------------------
Confidence            999999999999999999999999999 8999999999999999999999999977655543                  


Q ss_pred             cccCCcccccccccCCceeeecceEEEEecCCCCcCcccCHhhhccCCEEEEEEEEEeeccccceEEEeeecCCCccccC
Q psy4010         421 VRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWG  500 (1527)
Q Consensus       421 vR~gtp~~L~ld~~~~~lfLiwPlTVvH~IDe~SPLY~~T~edL~~~dfEIVViLEG~DESTGqTvQARTSYlp~EILWG  500 (1527)
                               +.|.+++++||+||+||+|+||++||||++++++|.++||||||+|||++|+||||+||||||+|+||+||
T Consensus       237 ---------g~d~g~d~~Flv~Plti~H~IDe~SPLy~l~~~~l~~~~FEiVViLeG~VEsTg~t~QaRTSYlp~EILWG  307 (400)
T KOG3827|consen  237 ---------GFDTGSDRLFLVWPLTIYHVIDETSPLYDLSRQDLAKADFEIVVILEGTVEATGMTTQARTSYLPSEILWG  307 (400)
T ss_pred             ---------ccCCCcCceEEEeceEEEEEcCCCCchhhhChhhhhhcceEEEEEEEeEEecccceeecccccchHHhhhc
Confidence                     45667789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeccceecC-CCcccccccccccchhhhhhchhhhhhhccc
Q psy4010         501 HRFEPLVRKD-KPCDKPHFKSYDDLINEALLESNIQHAKSKS  541 (1527)
Q Consensus       501 hRF~piV~~d-kg~y~IDfskFd~viP~~l~~~~~~~A~~~~  541 (1527)
                      |||+|+++.+ +|.|+|||++||++++.+   +|.|+||+--
T Consensus       308 hRF~pvv~~~~~g~Y~VDy~~F~~T~~V~---tP~csa~~l~  346 (400)
T KOG3827|consen  308 HRFVPVVTLEKNGKYEVDYSNFHKTYEVP---TPLCSAKELD  346 (400)
T ss_pred             cccceeeEeccCCcEEEEhHHcCceeecc---CCCcChhhhh
Confidence            9999999997 799999999999999998   9999999443

>KOG3827|consensus Back     alignment and domain information
>COG5383 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function Back     alignment and domain information
>COG5383 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1527
3jyc_A343 Crystal Structure Of The Eukaryotic Strong Inward-R 7e-62
3sph_A343 Inward Rectifier Potassium Channel Kir2.2 I223l Mut 1e-61
3spg_A343 Inward Rectifier Potassium Channel Kir2.2 R186a Mut 4e-61
3sya_A340 Crystal Structure Of The G Protein-Gated Inward Rec 8e-60
3syc_A340 Crystal Structure Of The G Protein-Gated Inward Rec 3e-59
3syp_A340 Crystal Structure Of The G Protein-Gated Inward Rec 4e-59
2rjb_A455 Crystal Structure Of Uncharacterized Protein Ydcj ( 2e-53
2qks_A321 Crystal Structure Of A Kir3.1-Prokaryotic Kir Chann 1e-37
1u4f_A270 Crystal Structure Of Cytoplasmic Domains Of Irk1 (K 2e-30
2xky_I309 Single Particle Analysis Of Kir2.1nc_4 In Negative 2e-30
2gix_A208 Cytoplasmic Domain Structure Of Kir2.1 Containing A 7e-30
2e4f_A208 Crystal Structure Of The Cytoplasmic Domain Of G-Pr 9e-29
3agw_A208 Crystal Structure Of The Cytoplasmic Domain Of G-Pr 1e-28
3auw_B182 Cytoplasmic Domain Of Inward Rectifier Potassium Ch 1e-28
1u4e_A212 Crystal Structure Of Cytoplasmic Domains Of Girk1 C 8e-28
3k6n_A207 Crystal Structure Of The S225e Mutant Kir3.1 Cytopl 1e-27
1n9p_A207 Crystal Structure Of The Cytoplasmic Domain Of G-pr 6e-26
2wll_A333 Potassium Channel From Burkholderia Pseudomallei Le 4e-18
1p7b_A333 Crystal Structure Of An Inward Rectifier Potassium 4e-17
2x6a_A301 Potassium Channel From Magnetospirillum Magnetotact 2e-14
2x6b_A301 Potassium Channel From Magnetospirillum Magnetotact 2e-14
1xl4_A301 Intermediate Gating Structure 1 Of The Inwardly Rec 3e-14
2wln_A301 Potassium Channel From Magnetospirillum Magnetotact 3e-14
3zrs_A301 X-Ray Crystal Structure Of A Kirbac Potassium Chann 4e-14
2wli_A301 Potassium Channel From Magnetospirillum Magnetotact 9e-14
>pdb|3JYC|A Chain A, Crystal Structure Of The Eukaryotic Strong Inward-Rectifier K+ Channel Kir2.2 At 3.1 Angstrom Resolution Length = 343 Back     alignment and structure 
Iteration: 1

 Score =  236 bits (602), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 118/237 (49%), Positives = 159/237 (67%), Gaps = 2/237 (0%)
Query: 776  FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
            F  I+WL+A  HGD L     +  F PCV+ VN F ++ LFSIETQ TIGYG R  T EC
Sbjct: 62   FGLIFWLIALIHGD-LENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEEC 120
Query: 836  PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
            P A++++ VQSIVG II +FM G + AK+ARPK+R QTLLFS  AV+  RDG LCLM+RV
Sbjct: 121  PLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRV 180
Query: 896  GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRI 955
            G++R KSHI+ A V+A L+K R T EGE +     ++ +  D+    IFL+ P  ++H I
Sbjct: 181  GNLR-KSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEI 239
Query: 956  DEESPLYDMAAKKLLTEKFEIIAILXXXXXXXXXXXXAKTSYLPSEILWGHRFEPLV 1012
            +E+SPL+ ++ + L T+ FEI+ IL            A++SYL SEILWGHRFEP++
Sbjct: 240  NEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVL 296
>pdb|3SPH|A Chain A, Inward Rectifier Potassium Channel Kir2.2 I223l Mutant In Complex With Pip2 Length = 343 Back     alignment and structure
>pdb|3SPG|A Chain A, Inward Rectifier Potassium Channel Kir2.2 R186a Mutant In Complex With Pip2 Length = 343 Back     alignment and structure
>pdb|3SYA|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) In Complex With Sodium And Pip2 Length = 340 Back     alignment and structure
>pdb|3SYC|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) D228n Mutant Length = 340 Back     alignment and structure
>pdb|3SYP|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) R201a Mutant Length = 340 Back     alignment and structure
>pdb|2RJB|A Chain A, Crystal Structure Of Uncharacterized Protein Ydcj (Sf1787) From Shigella Flexneri Which Includes Domain Duf1338. Northeast Structural Genomics Consortium Target Sfr276 Length = 455 Back     alignment and structure
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel Chimera Length = 321 Back     alignment and structure
>pdb|1U4F|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1) Channel Length = 270 Back     alignment and structure
>pdb|2XKY|I Chain I, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain Length = 309 Back     alignment and structure
>pdb|2GIX|A Chain A, Cytoplasmic Domain Structure Of Kir2.1 Containing Andersen's Mutation R218q And Rescue Mutation T309k Length = 208 Back     alignment and structure
>pdb|2E4F|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2 Length = 208 Back     alignment and structure
>pdb|3AGW|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2 In The Absence Of Na+ Length = 208 Back     alignment and structure
>pdb|3AUW|B Chain B, Cytoplasmic Domain Of Inward Rectifier Potassium Channel Kir3.2 In Complex With Cadmium Length = 182 Back     alignment and structure
>pdb|1U4E|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Girk1 Channel Length = 212 Back     alignment and structure
>pdb|3K6N|A Chain A, Crystal Structure Of The S225e Mutant Kir3.1 Cytoplasmic Pore Domain Length = 207 Back     alignment and structure
>pdb|1N9P|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-protein Activated Inward Rectifier Potassium Channel 1 Length = 207 Back     alignment and structure
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei Length = 333 Back     alignment and structure
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel Length = 333 Back     alignment and structure
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying K+ Channel Kirbac3.1 Length = 301 Back     alignment and structure
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel Highlights A Mechanism Of Channel Opening At The Bundle-Crossing Gate Length = 301 Back     alignment and structure
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1527
3sya_A340 G protein-activated inward rectifier potassium CH; 1e-82
3sya_A340 G protein-activated inward rectifier potassium CH; 5e-49
3sya_A340 G protein-activated inward rectifier potassium CH; 1e-09
3sya_A340 G protein-activated inward rectifier potassium CH; 1e-06
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 1e-81
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 7e-49
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 3e-11
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 2e-08
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 4e-66
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 8e-45
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 5e-11
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 2e-07
1p7b_A333 Integral membrane channel and cytosolic domains; t 9e-64
1p7b_A333 Integral membrane channel and cytosolic domains; t 1e-42
1p7b_A333 Integral membrane channel and cytosolic domains; t 7e-08
1p7b_A333 Integral membrane channel and cytosolic domains; t 4e-05
2xky_I309 Inward rectifier potassium channel 2; ION channel, 3e-61
2xky_I309 Inward rectifier potassium channel 2; ION channel, 7e-54
1xl4_A301 Inward rectifier potassium channel; integral membr 5e-61
1xl4_A301 Inward rectifier potassium channel; integral membr 7e-42
1xl4_A301 Inward rectifier potassium channel; integral membr 7e-12
1xl4_A301 Inward rectifier potassium channel; integral membr 2e-08
2gix_A208 Inward rectifier potassium channel 2; cytoplasmic 4e-59
2gix_A208 Inward rectifier potassium channel 2; cytoplasmic 6e-56
3agw_A208 KIR3.2, G protein-activated inward rectifier potas 3e-56
3agw_A208 KIR3.2, G protein-activated inward rectifier potas 4e-52
1n9p_A207 GIRK1, G protein-activated inward rectifier potass 5e-56
1n9p_A207 GIRK1, G protein-activated inward rectifier potass 2e-51
1u4f_A270 Inward rectifier potassium channel 2; cytoplasmic 8e-56
1u4f_A270 Inward rectifier potassium channel 2; cytoplasmic 6e-52
2rjb_A455 Uncharacterized protein; structural genomics, PSI- 3e-53
2rjb_A455 Uncharacterized protein; structural genomics, PSI- 1e-30
2rjb_A455 Uncharacterized protein; structural genomics, PSI- 6e-24
2rjb_A455 Uncharacterized protein; structural genomics, PSI- 3e-20
3iuz_A340 Putative glyoxalase superfamily protein; struct ge 1e-13
3iuz_A340 Putative glyoxalase superfamily protein; struct ge 1e-10
3lho_A267 Putative hydrolase; structural genomics, joint cen 8e-12
3lho_A267 Putative hydrolase; structural genomics, joint cen 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 Back     alignment and structure
 Score =  274 bits (701), Expect = 1e-82
 Identities = 113/238 (47%), Positives = 170/238 (71%), Gaps = 3/238 (1%)

Query: 776  FACIWWLLAYTHGDVLSENQNNPQFVPCVIGVNSFASSLLFSIETQHTIGYGSRSTTTEC 835
            F  IWWL+AY  GD+  ++  +P + PCV  +N F S+ LFSIET+ TIGYG R  T +C
Sbjct: 60   FGMIWWLIAYIRGDM--DHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKC 117

Query: 836  PEAIWLMCVQSIVGTIIQAFMTGLVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRV 895
            PE I L+ +QS++G+I+ AFM G +F K+++PK+R +TL+FS  AVI+ RDG LCLMFRV
Sbjct: 118  PEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRV 177

Query: 896  GDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKLHIDQYDSDIFLLWPTIVVHRI 955
            GD+R  SHI+ AS++A L+K++ T+EGE +    +++ +     D  +FL+ P I+ H I
Sbjct: 178  GDLR-NSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEI 236

Query: 956  DEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTTQAKTSYLPSEILWGHRFEPLVR 1013
            +++SP ++++  +L  E+ EI+ ILEG  E+TG T QA++SY+ SEILWG+RF P++ 
Sbjct: 237  NQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLT 294
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus} Length = 309 Back     alignment and structure
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus} Length = 309 Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 Back     alignment and structure
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus} Length = 208 Back     alignment and structure
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus} Length = 208 Back     alignment and structure
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A Length = 208 Back     alignment and structure
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A Length = 208 Back     alignment and structure
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A Length = 207 Back     alignment and structure
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A Length = 207 Back     alignment and structure
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus} Length = 270 Back     alignment and structure
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus} Length = 270 Back     alignment and structure
>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Shigella flexneri} Length = 455 Back     alignment and structure
>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Shigella flexneri} Length = 455 Back     alignment and structure
>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Shigella flexneri} Length = 455 Back     alignment and structure
>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Shigella flexneri} Length = 455 Back     alignment and structure
>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia eutropha} Length = 340 Back     alignment and structure
>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia eutropha} Length = 340 Back     alignment and structure
>3lho_A Putative hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina} Length = 267 Back     alignment and structure
>3lho_A Putative hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina} Length = 267 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1527
2rjb_A455 Uncharacterized protein; structural genomics, PSI- 100.0
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 100.0
3sya_A340 G protein-activated inward rectifier potassium CH; 100.0
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 100.0
3sya_A340 G protein-activated inward rectifier potassium CH; 100.0
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 100.0
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 100.0
1xl4_A301 Inward rectifier potassium channel; integral membr 100.0
1xl4_A301 Inward rectifier potassium channel; integral membr 100.0
1p7b_A333 Integral membrane channel and cytosolic domains; t 100.0
1p7b_A333 Integral membrane channel and cytosolic domains; t 100.0
2gix_A208 Inward rectifier potassium channel 2; cytoplasmic 100.0
1u4f_A270 Inward rectifier potassium channel 2; cytoplasmic 100.0
3agw_A208 KIR3.2, G protein-activated inward rectifier potas 100.0
1n9p_A207 GIRK1, G protein-activated inward rectifier potass 100.0
2gix_A208 Inward rectifier potassium channel 2; cytoplasmic 100.0
2xky_I309 Inward rectifier potassium channel 2; ION channel, 100.0
1u4f_A270 Inward rectifier potassium channel 2; cytoplasmic 100.0
1n9p_A207 GIRK1, G protein-activated inward rectifier potass 100.0
3agw_A208 KIR3.2, G protein-activated inward rectifier potas 100.0
2xky_I309 Inward rectifier potassium channel 2; ION channel, 100.0
3iuz_A340 Putative glyoxalase superfamily protein; struct ge 99.86
2rjb_A455 Uncharacterized protein; structural genomics, PSI- 99.83
3iuz_A340 Putative glyoxalase superfamily protein; struct ge 99.2
3lho_A267 Putative hydrolase; structural genomics, joint cen 98.95
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 98.87
2a9h_A155 Voltage-gated potassium channel; potassium channel 98.84
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 98.74
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 98.7
3lho_A267 Putative hydrolase; structural genomics, joint cen 98.61
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 98.61
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 98.54
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 98.43
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 98.39
3ouf_A97 Potassium channel protein; ION channel, membrane, 98.39
2q67_A114 Potassium channel protein; inverted teepee, helix 98.24
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 98.23
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 98.22
4gx0_A565 TRKA domain protein; membrane protein, ION channel 98.09
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 98.0
1lnq_A336 MTHK channels, potassium channel related protein; 97.91
3um7_A309 Potassium channel subfamily K member 4; potassium 97.66
3ukm_A280 Potassium channel subfamily K member 1; membrane p 97.53
3um7_A309 Potassium channel subfamily K member 4; potassium 96.95
3ukm_A280 Potassium channel subfamily K member 1; membrane p 96.85
3rvy_A285 ION transport protein; tetrameric ION channel, vol 95.57
>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Shigella flexneri} Back     alignment and structure
Probab=100.00  E-value=2.3e-111  Score=957.27  Aligned_cols=306  Identities=50%  Similarity=0.803  Sum_probs=256.7

Q ss_pred             CChhHHHHHHHHHHHHhhhhhcCChhhHHHHHHHhcHHHHhcCCccccc--ccccccccccccccccccCCHHHHHHHHH
Q psy4010        1108 MSPNAIRKLFSQSMSEMYKKQVPQYSTLLELVRQVNLDTLANSGKLDEM--SAEDLERLNEERHGAIRLGTPEELYNIRR 1185 (1527)
Q Consensus      1108 ~~~~~~R~~f~~ams~mY~~EVP~Y~~L~~lv~~vn~~~l~~~~~~~~~--~~~~~~rl~~ERHGAIR~Gt~~El~~~~r 1185 (1527)
                      |++|+||++||+|||+||++|||+|+|||++|.+||+.||+++|.+..+  ..|+|+||++|||||||||||+||++++|
T Consensus         5 v~~d~~Ra~Fa~Ams~MY~~EVPlY~~Llelv~~vn~~vl~~~~~~~~~~~~~g~l~Rl~~ERHGAIR~Gt~~ELa~~~R   84 (455)
T 2rjb_A            5 ITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRR   84 (455)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCTTGGGTCEEEEEEESCHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHhcCchhhhhhhhcCcchhccccccCCcCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887654  79999999999999999999999999999


Q ss_pred             HHHhhCCeecccccCCCCCCCceecccccCChhhhhcCCcchhhhhhhhhhccchhhc----------------------
Q psy4010        1186 LFSVMNMHPVGYYDLSTAGVPVHSTAFRSIDAYALNQSPFRVFTSLLRLELIEDKVEQ---------------------- 1243 (1527)
Q Consensus      1186 ~favmgM~pVgyYDl~~agvPvhsTaFRp~~~~~L~~npFrvftslLr~eli~~~~~~---------------------- 1243 (1527)
                      |||+|||+|||||||++||||||||||||+|+++|++|||||||||||+|||+|+.-+                      
T Consensus        85 iFa~mGm~pvGyYdL~~agvPvhstAFRp~d~~~La~nPFRvFtSlLr~el~~d~~lr~~a~~iL~~R~iftpr~~~Ll~  164 (455)
T 2rjb_A           85 MFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCRQLLE  164 (455)
T ss_dssp             HHHTTTCEEEEEECGGGGTCSEEEEEEECCSHHHHHHCCCEEEEEEECGGGCSSHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred             HHHHcCCcccccccCcccCCCceeeeeccCCHHHHhcCCceeeeeccchhhcCCHHHHHHHHHHHhcccCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999966400                      


Q ss_pred             ----------------------------------------------------cCCCcc----------------------
Q psy4010        1244 ----------------------------------------------------SDSPHE---------------------- 1249 (1527)
Q Consensus      1244 ----------------------------------------------------~~~~h~---------------------- 1249 (1527)
                                                                          -+||||                      
T Consensus       165 ~~e~~ggL~~~~A~~fv~~al~~F~w~~~a~v~~~~Y~~L~~~h~~~AdI~~f~g~hiNHLTpRvlDId~vq~~M~~~Gi  244 (455)
T 2rjb_A          165 EYEQQGGFNETQAQEFVQEALETFRWHQLATVDEETYRALHNEHRLIADVVCFPGCHINHLTPRTLDIDRVQSMMPECGI  244 (455)
T ss_dssp             HHHHHSSCBHHHHHHHHHHHHHHHCCCSBCSSCHHHHHHHHHHCHHHHHHHSSSSCCCSEEEEBCSCHHHHHHHTGGGTC
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHhhHHhhhhhccCCcccccCCCcccCHHHHHHHHHHcCC
Confidence                                                                057772                      


Q ss_pred             -------------------------------------cccccccchhhccccccChhhHHHHHHHHHHhhccCCCCCCCC
Q psy4010        1250 -------------------------------------AKHTARFGEVEQRGIALTAKGRQLYDYLLDKTRGSFKGIPDET 1292 (1527)
Q Consensus      1250 -------------------------------------g~HtARFGeieqRg~AlT~kGr~lYd~ll~~~~~~~~~~~~~~ 1292 (1527)
                                                           |+||||||||||||+|||||||+|||+||++       .+.+.
T Consensus       245 ~~K~~IEgpp~r~~PILLRQTSFkAl~e~~~F~~~~~GshtaRFgEieqRG~ALTpkGR~LYD~lL~~-------~~~~~  317 (455)
T 2rjb_A          245 EPKILIEGPPRREVPILLRQTSFKALEETVLFAGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRN-------AGTGQ  317 (455)
T ss_dssp             CCCSCCBSSCCCSSCBSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECBCBCHHHHHHHHHHHTT-------C----
T ss_pred             CcccceeCCCCCCCCeeeeecccccccccccccCCCCCceeeeeeeeeecccccChhHHHHHHHHHhh-------ccccc
Confidence                                                 9999999999999999999999999999987       23455


Q ss_pred             CHHHHHHHHhcccccCCCChHHHHhcccEeEEEEeCCCCCCCCCCCCCcCCcccccccccCCCCCCccccCCCCCCCCCc
Q psy4010        1293 NSKLYMENLASNFSVFPDDLNTLRKEKLAYFNYYVTDKEPYFGGPKPISLGGFIFVPLLCGDSSSPVYHCLDSCPPPQWN 1372 (1527)
Q Consensus      1293 ~~~~~~~~l~~~F~~fPD~~~~lr~~~Layf~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1372 (1527)
                      ++..|+++|+++|++|||||++||+||||||+|++|++|...   +                                  
T Consensus       318 ~~~~~~~~l~~~f~~fPd~~~~Lr~qgLayF~Y~~t~~g~~~---~----------------------------------  360 (455)
T 2rjb_A          318 DNLTHQMHLQETFRTFPDSEFLMRQQGLAWFRYRLTPSGEAH---R----------------------------------  360 (455)
T ss_dssp             ----CHHHHHHHGGGSCCSHHHHHHTTCBCEEEEECHHHHHT---G----------------------------------
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHhCCceEEEEeccCccccc---c----------------------------------
Confidence            678899999999999999999999999999999999765210   0                                  


Q ss_pred             hhhhhcccccccCCCCCCcccceeeeccccccccccccccccccccchhhccccccccccCccccccCCCCCCHHHHHHc
Q psy4010        1373 PALLRRSHKVCAGKNSRPRSIRLCVIDRGLKLFPAHTFRRRLSNGLSESALDLYQTDHISGKSHLDKNVNDFNLDNYVRA 1452 (1527)
Q Consensus      1373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 1452 (1527)
                                    ..                         ..                +          ..++++||++
T Consensus       361 --------------~~-------------------------~~----------------~----------~~~~~~Li~~  375 (455)
T 2rjb_A          361 --------------QA-------------------------IH----------------P----------GDDPQPLIER  375 (455)
T ss_dssp             --------------GG-------------------------CC----------------T----------TCCHHHHHHT
T ss_pred             --------------cc-------------------------cC----------------C----------CcCHHHHHHC
Confidence                          00                         00                0          1148999999


Q ss_pred             CceeEeccccccccccccccccccCCCCccccccccccCHHHHHHHhCCcCCChHHHHHHHHHHHHHhcc
Q psy4010        1453 GLIGYEGITYEDFLPVSAAGIFQSNLSTNANHHIESQSSRHDFENALGCSVRDEMKLYEDLEKKSLQDCT 1522 (1527)
Q Consensus      1453 g~~~~~pi~YEDFLPvSAagIFqSnLg~~~~~~~~~~~~~~~fe~~lg~~v~de~~lY~~~q~~Sl~~~~ 1522 (1527)
                      |+|.+||||||||||||||||||||||++++..+.+++||+.||++||++|+|||+||+++|++||++|+
T Consensus       376 G~v~~ePIvYEDFLP~SAAGIFqSNLg~~~~~~~~~~~~~~~fe~aLG~~v~D~~~LY~~~q~~Sl~~~~  445 (455)
T 2rjb_A          376 GWVVAQPITYEDFLPVSAAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCG  445 (455)
T ss_dssp             TSEEEEECBCCSCCCCC-------------------CTTHHHHHHHHTSCCBCHHHHHHHHHHHHHHHHT
T ss_pred             CCeeeccccccccCCcchhhhhhhcCCCccccccCcchhHHHHHHhcCCccCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999995
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus} Back     alignment and structure
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus} Back     alignment and structure
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A Back     alignment and structure
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A Back     alignment and structure
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus} Back     alignment and structure
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus} Back     alignment and structure
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus} Back     alignment and structure
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A Back     alignment and structure
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A Back     alignment and structure
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus} Back     alignment and structure
>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia eutropha} Back     alignment and structure
>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Shigella flexneri} Back     alignment and structure
>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia eutropha} Back     alignment and structure
>3lho_A Putative hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>3lho_A Putative hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina} Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1527
d1n9pa_202 b.1.18.16 (A:) G protein-gated inward rectifier Gi 2e-54
d1n9pa_202 b.1.18.16 (A:) G protein-gated inward rectifier Gi 2e-50
d1xl4a1161 b.1.18.16 (A:139-299) Inward rectifier potassium c 2e-50
d1xl4a1161 b.1.18.16 (A:139-299) Inward rectifier potassium c 2e-47
d1p7ba1158 b.1.18.16 (A:152-309) Inward rectifier potassium c 1e-49
d1p7ba1158 b.1.18.16 (A:152-309) Inward rectifier potassium c 1e-46
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 6e-10
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 2e-05
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 4e-08
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 0.002
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 202 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: G protein-gated inward rectifier Girk1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  186 bits (475), Expect = 2e-54
 Identities = 67/148 (45%), Positives = 96/148 (64%), Gaps = 1/148 (0%)

Query: 866  RPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVL 925
               +R +TL+FS  AVI+ RDG L LMFRVG++R  SH++ A ++  L+K+R T EGE L
Sbjct: 18   LGSERAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVSAQIRCKLLKSRQTPEGEFL 76

Query: 926  NPFLSELKLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTE 985
                 EL +        +FL+ P  + H ID +SP YD++ + + TE+FE++ ILEG  E
Sbjct: 77   PLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVE 136

Query: 986  STGQTTQAKTSYLPSEILWGHRFEPLVR 1013
            +TG T QA+TSY   E+LWGHRF P++ 
Sbjct: 137  TTGMTCQARTSYTEDEVLWGHRFFPVIS 164
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 202 Back     information, alignment and structure
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 161 Back     information, alignment and structure
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 161 Back     information, alignment and structure
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 158 Back     information, alignment and structure
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 158 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1527
d1n9pa_202 G protein-gated inward rectifier Girk1 {Mouse (Mus 100.0
d1p7ba1158 Inward rectifier potassium channel Kirbac1.1 {Burk 100.0
d1n9pa_202 G protein-gated inward rectifier Girk1 {Mouse (Mus 100.0
d1xl4a1161 Inward rectifier potassium channel kirbac3.1 {Magn 100.0
d1xl4a1161 Inward rectifier potassium channel kirbac3.1 {Magn 100.0
d1p7ba1158 Inward rectifier potassium channel Kirbac1.1 {Burk 100.0
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.75
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.71
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.08
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.05
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 98.76
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 97.92
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 95.2
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: G protein-gated inward rectifier Girk1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-49  Score=420.35  Aligned_cols=188  Identities=37%  Similarity=0.624  Sum_probs=164.5

Q ss_pred             HHHhhhcCCCCCCCeeeeccceEEeecCCeEEEEEEEeeCCCCceeeecEEEEEEEEeeecCCCcccccchhhHHHHHhh
Q psy4010         327 LVFAKVARPKQRTQTLLFSRTAVINQRDGHLCLMFRVGDMREKSHIIGASVKAYLVKARTTAEGEVLNPFLSELKVILDA  406 (1527)
Q Consensus       327 LVFAKfSRPkkRa~TI~FSk~AVIs~rDGklcLMFRVgNlR~ks~LIea~VRa~Lir~~~T~EGE~i~~~~~eLkL~ld~  406 (1527)
                      +.||||||  |||+||+||++|||+++||++||||||||+| +++|+||+||++|++.+.|.|||.++.++.+|      
T Consensus        13 ~~~~r~~~--kRa~tI~FS~~AVI~~~dG~~~LmfRvan~R-~~~liea~vr~~L~~~~~t~EGe~~~~~~~~l------   83 (202)
T d1n9pa_          13 VQHGNLGS--ERAETLMFSEHAVISMRDGKLTLMFRVGNLR-NSHMVSAQIRCKLLKSRQTPEGEFLPLDQLEL------   83 (202)
T ss_dssp             EEC-------CCSCCSSBCSCEEEEEETTEEEEEEEECCCS-SSCEEEEEEEEEEEEEEECTTSCEEEEEEEEC------
T ss_pred             EEEeecCC--CCcceEEEcccEEEEEECCEEEEEEEEecCc-CCeEEeEEEEEEEEEeeecCCCceEEEEEEEe------
Confidence            35777765  5666999999999999999999999999999 68999999999999999999999875432222      


Q ss_pred             hhcccccccccccccccCCcccccccccCCceeeecceEEEEecCCCCcCcccCHhhhccCCEEEEEEEEEeeccccceE
Q psy4010         407 VLQSTEFSSTTSTYVRAGTPYQLHIDQYDSDIFLLWPTIVVHRIDEESPLYDMAAKKLLTEKFEIIAILEGTTESTGQTT  486 (1527)
Q Consensus       407 ~~q~~e~~~~ts~~vR~gtp~~L~ld~~~~~lfLiwPlTVvH~IDe~SPLY~~T~edL~~~dfEIVViLEG~DESTGqTv  486 (1527)
                                           ++.++.+++.+||.|||||+|+||++||||++++++|.+++|||+|+|+|+||+|||++
T Consensus        84 ---------------------~l~~~~~~~~~fl~~p~tv~H~IDe~SPLy~~t~~~L~~~~~ElvV~l~G~de~t~~~v  142 (202)
T d1n9pa_          84 ---------------------DVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTC  142 (202)
T ss_dssp             ---------------------CSSTTTTTTEEECSSCEEEEEECCTTSTTTTCCTTGGGTCCCEEEEEEEEEETTTCCBC
T ss_pred             ---------------------eccccCCCCccEEcccEEEEEECCCCCCCcccchhhhhcCCeEEEEEEEEEecccCcEE
Confidence                                 23344556778999999999999999999999999999999999999999999999999


Q ss_pred             EEeeecCCCccccCCeeccceecCCCcccccccccccchhhhhhchhhhhhhccccchHHHHhhhhc
Q psy4010         487 QAKTSYLPSEILWGHRFEPLVRKDKPCDKPHFKSYDDLINEALLESNIQHAKSKSENTLLAQYRHKR  553 (1527)
Q Consensus       487 QARTSYlp~EILWGhRF~piV~~dkg~y~IDfskFd~viP~~l~~~~~~~A~~~~~~~~~~~~~~~~  553 (1527)
                      ||||||+++||+|||||+||++.++|.++|||++||++.|..   +|.|+|+      .+++|..+.
T Consensus       143 ~aR~sY~~~eI~wg~rF~div~~~~g~~~VD~s~F~~t~pv~---~P~~sa~------~~~~~~~~~  200 (202)
T d1n9pa_         143 QARTSYTEDEVLWGHRFFPVISLEEGFFKVDYSQFHATFEVP---TPPYSVK------EQEEMLLMS  200 (202)
T ss_dssp             CEEEEEEGGGEEETEEECCCEEESSSCEEECGGGSSCEEECC---CCCSCHH------HHHHHHHHH
T ss_pred             EEEEEEchHHEeeCCEEeeeEEecCCEEEEEHHHCCcceECC---CCCcCHH------HHHHHhhcc
Confidence            999999999999999999999999999999999999999886   7999999      777776553
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure