Psyllid ID: psy4020

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
MSSIRQVINDAVERDTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI
cccHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccccccEEEEEHHccccccccccEEEEEEEccccEEEEcccccccccccccccEEEEEEcccccccccEEEEEEEEEEEccEEEEEEccc
cHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccHHHHHEEHHHcccccHHcccccHHHHHcccccccccccccEEEEEEccEEEEEEEEEccccccEEEEEEEEEEcccccEEEEEEEEEcccccEEEEcccccccEcHHHcccEEEEEEEEcccccccEEEEEEEEEEEccccHEHHccc
MSSIRQVINDAverdtylpkypahfgQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLkndlnsstQFVVGLALCTlgaiaspeMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNtetsknvgntILYETVLSIMDIKSESGLRVLAVNILGrfllnndknIRYVALNTLLRTVYIDTSAVQRHRNTILeclkdpdvsIRRRALELSFALVNSANVRSMMKELLIFLEksepdfkahcssnivlcaerfapnkrwHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEksepdfkahcssnivlcaerfapnkrwHLDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLdsqtpgdsVTIVTMQATNENLTLVSDFLFqaavpktfqlqmlppsdtnippgsqvTQTLRVAKANNNVQASLRMRIKVSYnvngtfiqdqaei
MSSIRQVINDAVERDTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVatntetsknvgnTILYETVLSIMDIKSESGLRVLAVNILgrfllnndkNIRYVALNTLLRTVYidtsavqrhrntileclkdpdvsIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRVAKANNNVQASLRMRIKvsynvngtfiqdqaei
MSSIRQVINDAVERDTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI
******VINDAVERDTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIAS*****************SNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQM*************************NVQASLRMRIKVSYNVNGTFI******
*****Q*INDAVERDTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQ*********************************LRMRIKVSYNVNGTFI******
MSSIRQVINDAVERDTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI
MSSIRQVINDAVERDTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQ*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSSIRQVINDAVERDTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAIHQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVAVSENKDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTMQATNENLTLVSDFLFQAAVPKTFQLQMLPPSDTNIPPGSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQAEI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query530 2.2.26 [Sep-21-2011]
O43747 822 AP-1 complex subunit gamm yes N/A 0.588 0.379 0.653 1e-135
P22892 822 AP-1 complex subunit gamm yes N/A 0.588 0.379 0.653 1e-134
Q5R5M2 822 AP-1 complex subunit gamm yes N/A 0.588 0.379 0.650 1e-134
O75843 785 AP-1 complex subunit gamm no N/A 0.611 0.412 0.562 1e-115
O88512 791 AP-1 complex subunit gamm no N/A 0.588 0.394 0.576 1e-112
Q8I8U2 895 AP-1 complex subunit gamm yes N/A 0.588 0.348 0.521 1e-105
Q99128 853 AP-1 complex subunit gamm N/A N/A 0.596 0.370 0.535 1e-105
Q9ZUI6 862 AP-1 complex subunit gamm yes N/A 0.626 0.385 0.489 1e-101
Q84K16 876 AP-1 complex subunit gamm no N/A 0.624 0.377 0.446 3e-77
Q9UU81 865 AP-1 complex subunit gamm yes N/A 0.688 0.421 0.352 2e-49
>sp|O43747|AP1G1_HUMAN AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5 Back     alignment and function desciption
 Score =  480 bits (1236), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/366 (65%), Positives = 280/366 (76%), Gaps = 54/366 (14%)

Query: 21  YPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVG 80
           YPAHFGQLECLKLIAS +FTDKRIGYLGAMLLLDERQDVHLL+TN +KNDLN STQFV G
Sbjct: 61  YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQG 120

Query: 81  LALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATR 140
           LALCTLG + S EM RDLA EVE+L+K+SN+Y+RKKAALCA  +I KVPELME+FLPAT+
Sbjct: 121 LALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATK 180

Query: 141 LLLSDKNHAI--------------------------------------------HQV--- 153
            LL++KNH +                                            H V   
Sbjct: 181 NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGI 240

Query: 154 -------KILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK 206
                  +IL+LLRILG+ND ++SEAMNDILAQVATNTETSKNVGN ILYETVL+IMDIK
Sbjct: 241 SDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK 300

Query: 207 SESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVS 266
           SESGLRVLA+NILGRFLLNNDKNIRYVAL +LL+TV  D +AVQRHR+TI++CLKD DVS
Sbjct: 301 SESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVS 360

Query: 267 IRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLD 326
           I+RRA+ELSFALVN  N+R MMKELL FL+  EP+FKA C+S I L AE++AP+KRWH+D
Sbjct: 361 IKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHID 420

Query: 327 TLLKVL 332
           T+++VL
Sbjct: 421 TIMRVL 426
Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Homo sapiens (taxid: 9606)
>sp|P22892|AP1G1_MOUSE AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap1g1 PE=1 SV=3 Back     alignment and function description
>sp|Q5R5M2|AP1G1_PONAB AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP1G1 PE=2 SV=1 Back     alignment and function description
>sp|O75843|AP1G2_HUMAN AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1 SV=1 Back     alignment and function description
>sp|O88512|AP1G2_MOUSE AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=2 SV=2 Back     alignment and function description
>sp|Q8I8U2|AP1G_DICDI AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1 Back     alignment and function description
>sp|Q99128|AP1G1_USTMA AP-1 complex subunit gamma-1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=APL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9ZUI6|AP1G2_ARATH AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=2 SV=2 Back     alignment and function description
>sp|Q84K16|AP1G1_ARATH AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR PE=1 SV=1 Back     alignment and function description
>sp|Q9UU81|AP1G1_SCHPO AP-1 complex subunit gamma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl4 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
270013512 861 hypothetical protein TcasGA2_TC012117 [T 0.592 0.364 0.758 1e-156
189240845 873 PREDICTED: similar to adaptin, alpha/gam 0.592 0.359 0.758 1e-156
340722863 862 PREDICTED: AP-1 complex subunit gamma-1- 0.592 0.364 0.752 1e-154
350403596 862 PREDICTED: AP-1 complex subunit gamma-1- 0.592 0.364 0.752 1e-154
307165960 852 AP-1 complex subunit gamma-1 [Camponotus 0.592 0.368 0.752 1e-154
383850090 873 PREDICTED: AP-1 complex subunit gamma-1 0.592 0.359 0.752 1e-154
345482909 868 PREDICTED: AP-1 complex subunit gamma-1- 0.592 0.361 0.747 1e-154
307198063 834 AP-1 complex subunit gamma-1 [Harpegnath 0.592 0.376 0.75 1e-154
332028447 840 AP-1 complex subunit gamma-1 [Acromyrmex 0.592 0.373 0.737 1e-153
242003650 834 conserved hypothetical protein [Pediculu 0.662 0.420 0.681 1e-151
>gi|270013512|gb|EFA09960.1| hypothetical protein TcasGA2_TC012117 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/368 (75%), Positives = 301/368 (81%), Gaps = 54/368 (14%)

Query: 21  YPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVG 80
           YPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITN LKNDLNS+TQFVVG
Sbjct: 90  YPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSTTQFVVG 149

Query: 81  LALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATR 140
           LALCTLGAIASPEM+RDLA EVERLMKS NAYIRKKAALCA+RII +VPELMEIFLPATR
Sbjct: 150 LALCTLGAIASPEMARDLAGEVERLMKSPNAYIRKKAALCAFRIIKRVPELMEIFLPATR 209

Query: 141 LLLSDKNHAI--------------------------------------------HQV--- 153
            LLS+KNH +                                            H V   
Sbjct: 210 SLLSEKNHGVLITGVTLITEMCENSPDTLNHFKKIVPNLVRILKNLILAGYSPDHDVSGV 269

Query: 154 -------KILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK 206
                  KILKLLR+LG+ND +ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK
Sbjct: 270 SDPFLQVKILKLLRVLGRNDADASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIK 329

Query: 207 SESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVS 266
           SE GLRVLAVNILGRFLLNNDKNIRYVALNTLLRTV++DTSAVQRHR+TILECLKDPD+S
Sbjct: 330 SEGGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVHVDTSAVQRHRSTILECLKDPDIS 389

Query: 267 IRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLD 326
           IRRRA+ELSFALVNS N+R+MMKEL+ FLEK++P+FKAHCSS+IV+ AERFAPNKRWHLD
Sbjct: 390 IRRRAMELSFALVNSQNIRTMMKELITFLEKADPEFKAHCSSSIVMAAERFAPNKRWHLD 449

Query: 327 TLLKVLVA 334
           TLLKVLV 
Sbjct: 450 TLLKVLVG 457

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189240845|ref|XP_001812763.1| PREDICTED: similar to adaptin, alpha/gamma/epsilon [Tribolium castaneum] Back     alignment and taxonomy information
>gi|340722863|ref|XP_003399820.1| PREDICTED: AP-1 complex subunit gamma-1-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350403596|ref|XP_003486848.1| PREDICTED: AP-1 complex subunit gamma-1-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|307165960|gb|EFN60287.1| AP-1 complex subunit gamma-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383850090|ref|XP_003700650.1| PREDICTED: AP-1 complex subunit gamma-1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|345482909|ref|XP_003424700.1| PREDICTED: AP-1 complex subunit gamma-1-like isoform 2 [Nasonia vitripennis] gi|345482911|ref|XP_001599424.2| PREDICTED: AP-1 complex subunit gamma-1-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307198063|gb|EFN79116.1| AP-1 complex subunit gamma-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332028447|gb|EGI68490.1| AP-1 complex subunit gamma-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|242003650|ref|XP_002422813.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505671|gb|EEB10075.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
FB|FBgn0030089 982 AP-1gamma "Adaptor Protein com 0.345 0.186 0.814 3.8e-94
UNIPROTKB|F1NDA9 820 AP1G1 "Uncharacterized protein 0.407 0.263 0.653 1.3e-92
UNIPROTKB|E9PU39 825 Ap1g1 "Protein Ap1g1" [Rattus 0.341 0.219 0.756 7e-92
UNIPROTKB|O43747 822 AP1G1 "AP-1 complex subunit ga 0.341 0.220 0.762 5.5e-92
MGI|MGI:101919 822 Ap1g1 "adaptor protein complex 0.341 0.220 0.762 5.5e-92
UNIPROTKB|G3MZH4 825 AP1G1 "Uncharacterized protein 0.341 0.219 0.762 5.5e-92
UNIPROTKB|J3KQU9 825 AP1G1 "AP-1 complex subunit ga 0.415 0.266 0.653 4.3e-92
UNIPROTKB|B3KXW5 845 AP1G1 "AP-1 complex subunit ga 0.341 0.214 0.762 5.5e-92
UNIPROTKB|F1MF68 822 AP1G1 "Uncharacterized protein 0.341 0.220 0.762 5.5e-92
UNIPROTKB|E2RPG3 822 AP1G1 "Uncharacterized protein 0.341 0.220 0.762 5.5e-92
FB|FBgn0030089 AP-1gamma "Adaptor Protein complex 1, gamma subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 759 (272.2 bits), Expect = 3.8e-94, Sum P(3) = 3.8e-94
 Identities = 149/183 (81%), Positives = 168/183 (91%)

Query:   152 QVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGL 211
             QVKIL+LLRILG ND +ASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDI+SE GL
Sbjct:   293 QVKILRLLRILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIRSEGGL 352

Query:   212 RVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRA 271
             RVLAVNILGRFLLN+DKNIRYVALNTLLRTV+ DTSAVQRHR TILECLKDPDVSIRRRA
Sbjct:   353 RVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPDVSIRRRA 412

Query:   272 LELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKV 331
             +ELSFAL+N+ N+R+M KELL+FLEK++ +FKA CSS ++L AER++P  RWHLDT L V
Sbjct:   413 MELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPTTRWHLDTQLSV 472

Query:   332 LVA 334
             L+A
Sbjct:   473 LIA 475
GO:0030135 "coated vesicle" evidence=TAS
GO:0016183 "synaptic vesicle coating" evidence=TAS
GO:0008021 "synaptic vesicle" evidence=TAS
GO:0007269 "neurotransmitter secretion" evidence=NAS
GO:0006901 "vesicle coating" evidence=TAS
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0044431 "Golgi apparatus part" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
GO:0030136 "clathrin-coated vesicle" evidence=IDA
GO:0055037 "recycling endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0030141 "secretory granule" evidence=IDA
GO:0033363 "secretory granule organization" evidence=IMP
GO:0048749 "compound eye development" evidence=IMP
GO:0035976 "AP1 complex" evidence=IMP;IPI
UNIPROTKB|F1NDA9 AP1G1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E9PU39 Ap1g1 "Protein Ap1g1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O43747 AP1G1 "AP-1 complex subunit gamma-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:101919 Ap1g1 "adaptor protein complex AP-1, gamma 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZH4 AP1G1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J3KQU9 AP1G1 "AP-1 complex subunit gamma-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B3KXW5 AP1G1 "AP-1 complex subunit gamma-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MF68 AP1G1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPG3 AP1G1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O43747AP1G1_HUMANNo assigned EC number0.65300.58860.3795yesN/A
Q5R5M2AP1G1_PONABNo assigned EC number0.65020.58860.3795yesN/A
P22892AP1G1_MOUSENo assigned EC number0.65300.58860.3795yesN/A
Q8I8U2AP1G_DICDINo assigned EC number0.52180.58860.3486yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query530
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 4e-94
pfam02883115 pfam02883, Alpha_adaptinC2, Adaptin C-terminal dom 3e-24
smart00809104 smart00809, Alpha_adaptinC2, Adaptin C-terminal do 8e-24
COG5096 757 COG5096, COG5096, Vesicle coat complex, various su 8e-05
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  295 bits (758), Expect = 4e-94
 Identities = 133/356 (37%), Positives = 192/356 (53%), Gaps = 52/356 (14%)

Query: 21  YPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVG 80
               F   E +KL+AS+ FT KR+GYL   LL +E  D+ +L+TNS+K DL S    + G
Sbjct: 37  EDISFLFFEVVKLVASNDFTLKRLGYLYLKLLAEESPDLAILVTNSIKKDLQSPNPLIRG 96

Query: 81  LALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFL-PAT 139
           LAL TL  I  PE++RDLA ++++L+   + Y+RKKAAL   ++  K P+L+  FL P  
Sbjct: 97  LALRTLSCIRVPELARDLAPDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRDFLVPEL 156

Query: 140 RLLLSDKNH-----------------------AIH-----------------QVKILKLL 159
           + LLSDK+                         +                  QVKIL+LL
Sbjct: 157 KELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVRRLCNLLTVCNPWLQVKILRLL 216

Query: 160 RILGK-NDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNI 218
                 +  E  E + DIL  +        N  N +LYE V +I+ +  E  L VLAVN 
Sbjct: 217 TRYAPQDPREPKELLEDILNLLQ-------NSNNAVLYEAVKTIIHLDPEPELIVLAVNA 269

Query: 219 LGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLK-DPDVSIRRRALELSFA 277
           LGR L + D+N+RYVAL  L + +     AVQ H + I+ CLK D D+SIR RAL+L + 
Sbjct: 270 LGRLLSSPDENLRYVALRNLNKILEKHPPAVQ-HLDLIIFCLKTDDDISIRLRALDLLYK 328

Query: 278 LVNSANVRSMMKELLIFL-EKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVL 332
           LV+ +NV+ ++KELL ++ E ++P+FK      I   AE+F  +  W +D LL++L
Sbjct: 329 LVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLLELL 384

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|217268 pfam02883, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|197886 smart00809, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 530
KOG1062|consensus866 100.0
KOG1077|consensus 938 100.0
PTZ00429 746 beta-adaptin; Provisional 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
KOG1059|consensus 877 100.0
KOG1061|consensus 734 100.0
KOG1058|consensus 948 100.0
KOG1060|consensus 968 100.0
COG5096 757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1078|consensus 865 100.0
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 99.98
PF02883115 Alpha_adaptinC2: Adaptin C-terminal domain; InterP 99.9
KOG1086|consensus594 99.89
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 99.86
KOG1062|consensus 866 99.42
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.29
PTZ00429 746 beta-adaptin; Provisional 99.07
PRK09687280 putative lyase; Provisional 99.01
PRK09687280 putative lyase; Provisional 98.85
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.73
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.55
KOG1059|consensus 877 98.41
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.34
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.34
KOG1824|consensus1233 98.29
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.12
KOG0212|consensus675 98.09
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.07
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.03
KOG2171|consensus 1075 98.02
KOG1058|consensus 948 97.99
KOG0166|consensus514 97.94
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.84
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.8
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.78
PF05804708 KAP: Kinesin-associated protein (KAP) 97.78
KOG2171|consensus 1075 97.74
KOG2259|consensus 823 97.67
KOG1078|consensus 865 97.52
KOG0212|consensus675 97.51
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.48
KOG1060|consensus 968 97.48
KOG1077|consensus 938 97.45
KOG2023|consensus885 97.44
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.43
KOG0166|consensus514 97.35
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.11
KOG1248|consensus1176 97.1
KOG1242|consensus569 97.05
KOG1061|consensus734 96.95
KOG1242|consensus569 96.94
KOG0213|consensus 1172 96.91
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.91
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.87
KOG0414|consensus1251 96.8
KOG1824|consensus1233 96.75
TIGR02270410 conserved hypothetical protein. Members are found 96.66
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.5
KOG1241|consensus 859 96.47
KOG1020|consensus 1692 96.37
TIGR02270410 conserved hypothetical protein. Members are found 96.29
KOG2259|consensus823 96.28
KOG1248|consensus 1176 96.28
PF05804708 KAP: Kinesin-associated protein (KAP) 96.21
KOG1241|consensus859 96.17
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.14
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.09
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.04
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.04
KOG0213|consensus1172 96.0
KOG0414|consensus1251 95.98
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.98
KOG1240|consensus 1431 95.93
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.92
KOG2160|consensus342 95.88
KOG1020|consensus 1692 95.83
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 95.71
KOG4224|consensus550 95.68
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.61
COG1413335 FOG: HEAT repeat [Energy production and conversion 95.59
PF1036392 DUF2435: Protein of unknown function (DUF2435) 95.58
KOG1240|consensus 1431 95.55
PF14500262 MMS19_N: Dos2-interacting transcription regulator 95.53
KOG4199|consensus461 95.47
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 95.47
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.47
KOG2023|consensus 885 95.18
KOG0915|consensus 1702 95.02
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 95.0
COG5181 975 HSH155 U2 snRNP spliceosome subunit [RNA processin 94.9
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.83
KOG1949|consensus 1005 94.8
COG50981128 Chromosome condensation complex Condensin, subunit 94.71
KOG0168|consensus 1051 94.59
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 94.29
KOG1943|consensus 1133 94.05
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.59
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 93.42
KOG1293|consensus678 93.32
KOG4653|consensus982 93.32
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 93.23
PF14796145 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit 93.22
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 93.15
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 93.05
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 92.77
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 92.71
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 92.65
KOG4224|consensus550 92.25
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 92.08
PF05004309 IFRD: Interferon-related developmental regulator ( 91.48
COG5098 1128 Chromosome condensation complex Condensin, subunit 91.19
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 91.17
PF08167165 RIX1: rRNA processing/ribosome biogenesis 91.07
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 91.03
PF1036392 DUF2435: Protein of unknown function (DUF2435) 90.79
KOG0211|consensus759 90.69
KOG1525|consensus 1266 90.18
KOG1992|consensus960 89.71
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 89.6
KOG2025|consensus 892 89.31
KOG2038|consensus 988 89.24
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 89.06
PF08167165 RIX1: rRNA processing/ribosome biogenesis 88.8
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 88.52
KOG2025|consensus 892 88.33
KOG0915|consensus 1702 87.91
KOG1967|consensus 1030 87.42
KOG2160|consensus342 87.39
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 87.31
KOG4413|consensus524 87.27
smart00638574 LPD_N Lipoprotein N-terminal Domain. 87.01
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 86.98
KOG1525|consensus 1266 86.8
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 86.61
KOG2137|consensus700 86.36
cd06561197 AlkD_like A new structural DNA glycosylase. This d 85.62
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 84.69
KOG2956|consensus516 84.37
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 84.17
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 83.92
KOG0567|consensus289 83.84
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 83.82
KOG2274|consensus 1005 83.65
cd06561197 AlkD_like A new structural DNA glycosylase. This d 83.53
cd03561133 VHS VHS domain family; The VHS domain is present i 81.77
KOG2213|consensus460 81.45
KOG2062|consensus929 81.26
KOG2062|consensus929 81.01
PF05004309 IFRD: Interferon-related developmental regulator ( 80.42
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 80.2
COG5116926 RPN2 26S proteasome regulatory complex component [ 80.06
>KOG1062|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-100  Score=808.81  Aligned_cols=512  Identities=55%  Similarity=0.824  Sum_probs=464.7

Q ss_pred             hhhcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHHhhcCCCChhhhhHHHHHHhcCCChhh
Q psy4020          15 DTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEM   94 (530)
Q Consensus        15 ~i~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~kDL~s~n~~vr~lALr~l~~i~~~el   94 (530)
                      ||||||||.|||++||+||++|++|.+||+|||++++++++++|+.+|+||+++|||+|+|.+++|+||+++|+|+++||
T Consensus        60 Yi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~Em  139 (866)
T KOG1062|consen   60 YIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEM  139 (866)
T ss_pred             HHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHhhHHHHHHhcCCCCCcc------------------------
Q psy4020          95 SRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNHAI------------------------  150 (530)
Q Consensus        95 ~~~l~~~V~~~l~~~~~yVRK~A~la~~ki~~~~p~~i~~~i~~l~~lL~d~n~~V------------------------  150 (530)
                      ++++.|.|.+++.+++|||||||++|++|++++.|++++.|++...++|+|++|||                        
T Consensus       140 ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~  219 (866)
T KOG1062|consen  140 ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD  219 (866)
T ss_pred             hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998                        


Q ss_pred             ------------------------------hHHHHHHHHHhhcCCChhhHHHHHHHHHHHhhcccCCCCCcchhHHHHHH
Q psy4020         151 ------------------------------HQVKILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVL  200 (530)
Q Consensus       151 ------------------------------~qi~iL~lL~~l~~~~~~~~~~l~~iL~~~l~~~~~~~n~~~aV~~eai~  200 (530)
                                                    +|++|||+|+.|++.|++.++.|.|+|.++.+++++++|+++||+|||++
T Consensus       220 l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~  299 (866)
T KOG1062|consen  220 LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVR  299 (866)
T ss_pred             HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence                                          89999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhccChHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhccC
Q psy4020         201 SIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVN  280 (530)
Q Consensus       201 ~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~aL~ll~~l~n  280 (530)
                      +|+.+.++++++++++++|++||.++|.|+||+||..|.+.++.+|.++++|+.+|+.||+|+|.+||++|||++|+|+|
T Consensus       300 TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn  379 (866)
T KOG1062|consen  300 TIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN  379 (866)
T ss_pred             HHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCCCchhHHHHHHHHHHH-----------hhhhhhcchh-----
Q psy4020         281 SANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA-----------NLLGFSNRAL-----  344 (530)
Q Consensus       281 ~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~vd~Ll~lL~~-----------~~~~~v~~a~-----  344 (530)
                      ++|+..+++||++|+..+|.+||.+++.+|..+|+||+|+..|++|++++.+..           +++++|.+|.     
T Consensus       380 ~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~  459 (866)
T KOG1062|consen  380 ESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHE  459 (866)
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhh
Confidence            999999999999999999999999999999999999999999999999999987           5555555530     


Q ss_pred             --------------------------------------------------------------------------------
Q psy4020         345 --------------------------------------------------------------------------------  344 (530)
Q Consensus       345 --------------------------------------------------------------------------------  344 (530)
                                                                                                      
T Consensus       460 y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al  539 (866)
T KOG1062|consen  460 YAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTAL  539 (866)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------------hhHHHHHHHHHHhhcCcchHHHHHhhccCCCCCCCc-----------------
Q psy4020         345 ---------------------------RDQRRALELSFALVNSANVRSMMKELLIFLEKSEPD-----------------  380 (530)
Q Consensus       345 ---------------------------eiq~~a~e~~~ll~~~p~~r~~ile~l~~l~~~~~~-----------------  380 (530)
                                                 |+||||+||..++.++.++|+.++|+||.+|+...+                 
T Consensus       540 ~KLSsr~~s~~~ri~~lI~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe~mp~~e~~~~~~~~~g~~~~~i~~~~~p  619 (866)
T KOG1062|consen  540 LKLSSRFHSSSERIKQLISSYKSSLDTELQQRAVEYNALFAKDKHLRKSILERMPSCEDITVDARLDGNGPAAIEQGAEP  619 (866)
T ss_pred             HHHHhhccccHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccchHHHHHhccCC
Confidence                                       899999999999999999999999999988773320                 


Q ss_pred             ----------------------------------cccCCCCCcccccccCCCCcCCcchhhhhhhhc-------------
Q psy4020         381 ----------------------------------FKAHCSSNIVLCAERFAPNKRWHLDTLLKVLVA-------------  413 (530)
Q Consensus       381 ----------------------------------l~~~~~~~~~~~~~~~~p~~~~~~~~l~dll~~-------------  413 (530)
                                                        ++|...+. +.+....+|......+.+.|+++.             
T Consensus       620 ~~~~~~~~~~~~l~d~~~~~~~~~~~s~~~~l~~~L~~~~~~-p~~~~~~~p~p~~~~~~~~~I~~~~~s~~~~~~~~~~  698 (866)
T KOG1062|consen  620 YKSAGESLGVAELSDLLPLDSKETPTSSLNDLEDLLDKDESS-PGASNGAAPVPSEGGNVLQDILGDVLSQSKNSKEKLD  698 (866)
T ss_pred             CcccccccccchhhhccCCCCCcCCcccccchhccCCCccCC-CCCCCCCCCCCCCccchhhhhhhccccccccchhccc
Confidence                                              11111000 011111111111123344444431             


Q ss_pred             ----------------------------------cCC-C-------CCCceeEEEeCCCcEEEEEeecCCCCCCeEEEEE
Q psy4020         414 ----------------------------------VSE-N-------KDKVSVKAYDNHGVVINLLLDSQTPGDSVTIVTM  451 (530)
Q Consensus       414 ----------------------------------~~~-~-------~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~  451 (530)
                                                        +++ |       +..|++++|+++|+++++.+.+.+.++..+++++
T Consensus       699 L~~~~~~~~~~s~a~~~~s~~sp~~s~~~s~l~~l~p~p~~~~~~~~~~~~~~~~dkssl~~~~~~~k~~~n~~~t~i~~  778 (866)
T KOG1062|consen  699 LAGSLFVGSSSSAAPPAPSGTSPSSSQPFSLLSGLSPDPSKNTLAATDYPSIKAYDKSSLLVELSFTKGPSNKKTTVITL  778 (866)
T ss_pred             cccccccccCCCCCCCCcCCCCCcCCCcchhhcccCCCccccccccccCCcceeeecccceeeeeeccCCCCCceeEEEe
Confidence                                              111 0       0167899999999999999999998888999999


Q ss_pred             EEeeCCccc-ccceEEEEeecCceEEEeeCCCCCCCCC--CCCceEEEEEEecCCCCCcceeEEEEEEEEECCeeeeeee
Q psy4020         452 QATNENLTL-VSDFLFQAAVPKTFQLQMLPPSDTNIPP--GSQVTQTLRVAKANNNVQASLRMRIKVSYNVNGTFIQDQA  528 (530)
Q Consensus       452 ~~~n~~~~~-i~~~~fq~AVpK~~~l~l~p~Sg~~l~~--~~~itQ~~~i~~~~~~~~~~~~lr~k~~y~~~~~~~~e~~  528 (530)
                      +|+|.++.+ +++|+||+||||+++++++|+||+.+|+  ++++||.|+|   .|+++++++||.|++|.++|..+.|.+
T Consensus       779 ~~tn~s~~~~l~~F~~~aAv~ks~ql~l~~~ss~~~~~~~~g~~tq~~rv---~n~~~~~l~~r~rl~~~~~G~s~~e~~  855 (866)
T KOG1062|consen  779 TFTNLSPNTDLTDFHFQAAVPKSLQLQLQPASSNSLPASGGGHITQVLRV---LNPQKSTLKLRLRLSYSLNGSSVLENF  855 (866)
T ss_pred             eccCCCCCcchhhhcccccchHHHhhccCCccccccCcCCCCcceeEEEE---ecCCCceEEEEEEEEeecCCchHHhhh
Confidence            999999988 9999999999999999999999999999  6779999999   999999999999999999999998888


Q ss_pred             eC
Q psy4020         529 EI  530 (530)
Q Consensus       529 ~v  530 (530)
                      +|
T Consensus       856 ev  857 (866)
T KOG1062|consen  856 EV  857 (866)
T ss_pred             hh
Confidence            75

>KOG1077|consensus Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1059|consensus Back     alignment and domain information
>KOG1061|consensus Back     alignment and domain information
>KOG1058|consensus Back     alignment and domain information
>KOG1060|consensus Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1078|consensus Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1086|consensus Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>KOG1062|consensus Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1059|consensus Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0212|consensus Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>KOG1058|consensus Back     alignment and domain information
>KOG0166|consensus Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>KOG2259|consensus Back     alignment and domain information
>KOG1078|consensus Back     alignment and domain information
>KOG0212|consensus Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1060|consensus Back     alignment and domain information
>KOG1077|consensus Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0166|consensus Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1248|consensus Back     alignment and domain information
>KOG1242|consensus Back     alignment and domain information
>KOG1061|consensus Back     alignment and domain information
>KOG1242|consensus Back     alignment and domain information
>KOG0213|consensus Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0414|consensus Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1241|consensus Back     alignment and domain information
>KOG1020|consensus Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG2259|consensus Back     alignment and domain information
>KOG1248|consensus Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1241|consensus Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0213|consensus Back     alignment and domain information
>KOG0414|consensus Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1240|consensus Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2160|consensus Back     alignment and domain information
>KOG1020|consensus Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224|consensus Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1240|consensus Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG4199|consensus Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>KOG0915|consensus Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1949|consensus Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0168|consensus Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1943|consensus Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1293|consensus Back     alignment and domain information
>KOG4653|consensus Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG4224|consensus Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG0211|consensus Back     alignment and domain information
>KOG1525|consensus Back     alignment and domain information
>KOG1992|consensus Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2025|consensus Back     alignment and domain information
>KOG2038|consensus Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2025|consensus Back     alignment and domain information
>KOG0915|consensus Back     alignment and domain information
>KOG1967|consensus Back     alignment and domain information
>KOG2160|consensus Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG4413|consensus Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1525|consensus Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2137|consensus Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG2956|consensus Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG0567|consensus Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG2274|consensus Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2213|consensus Back     alignment and domain information
>KOG2062|consensus Back     alignment and domain information
>KOG2062|consensus Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query530
1w63_A618 Ap1 Clathrin Adaptor Core Length = 618 1e-136
2jkr_A623 Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm 5e-18
3zy7_A122 Crystal Structure Of Computationally Redesigned Gam 6e-18
2vgl_A621 Ap2 Clathrin Adaptor Core Length = 621 6e-18
2a7b_A120 On The Routine Use Of Soft X-Rays In Macromolecular 4e-17
1gyu_A140 Gamma-Adaptin Appendage Domain From Clathrin Adapto 5e-17
1iu1_A146 Crystal Structure Of Human Gamma1-Adaptin Ear Domai 7e-17
1gyv_A120 Gamma-Adaptin Appendage Domain From Clathrin Adapto 1e-16
1gyw_A128 Gamma-Adaptin Appendage Domain From Clathrin Adapto 4e-16
2e9g_A131 Solution Structure Of The Alpha Adaptinc2 Domain Fr 5e-08
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 2e-04
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 2e-04
1p4u_A153 Crystal Structure Of Gga3 Gae Domain In Complex Wit 5e-04
1w63_B584 Ap1 Clathrin Adaptor Core Length = 584 7e-04
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core Length = 618 Back     alignment and structure 
Iteration: 1

 Score =  480 bits (1235), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/370 (64%), Positives = 282/370 (76%), Gaps = 54/370 (14%)
Query: 17  YLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLKNDLNSSTQ 76
           ++  YPAHFGQLECLKLIAS +FTDKRIGYLGAMLLLDERQDVHLL+TN +KNDLN STQ
Sbjct: 62  HMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQ 121
Query: 77  FVVGLALCTLGAIASPEMSRDLASEVERLMKSSNAYIRKKAALCAYRIILKVPELMEIFL 136
           FV GLALCTLG + S EM RDLA EVE+L+K+SN+Y+RKKAALCA  +I KVPELME+FL
Sbjct: 122 FVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFL 181
Query: 137 PATRLLLSDKNHAI--------------------------------------------HQ 152
           PAT+ LL++KNH +                                            H 
Sbjct: 182 PATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHD 241
Query: 153 V----------KILKLLRILGKNDVEASEAMNDILAQVATNTETSKNVGNTILYETVLSI 202
           V          +IL+LLRILG+ND ++SEAMNDILAQVATNTETSKNVGN ILYETVL+I
Sbjct: 242 VSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTI 301
Query: 203 MDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTVYIDTSAVQRHRNTILECLKD 262
           MDIKSESGLRVLA+NILGRFLLNNDKNIRYVAL +LL+TV  D +AVQRHR+TI++CLKD
Sbjct: 302 MDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKD 361
Query: 263 PDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAPNKR 322
            DVSI+RRA+ELSFALVN  N+R MMKELL FL+  EP+FKA C+S I L AE++AP+KR
Sbjct: 362 LDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKR 421
Query: 323 WHLDTLLKVL 332
           WH+DT+++VL
Sbjct: 422 WHIDTIMRVL 431
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm( Phosphos)qikrllse Length = 623 Back     alignment and structure
>pdb|3ZY7|A Chain A, Crystal Structure Of Computationally Redesigned Gamma- Adaptin Appendage Domain Forming A Symmetric Homodimer Length = 122 Back     alignment and structure
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core Length = 621 Back     alignment and structure
>pdb|2A7B|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular Crystallography, Part Iii- The Optimal Data Collection Wavelength Length = 120 Back     alignment and structure
>pdb|1GYU|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1 Length = 140 Back     alignment and structure
>pdb|1IU1|A Chain A, Crystal Structure Of Human Gamma1-Adaptin Ear Domain Length = 146 Back     alignment and structure
>pdb|1GYV|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1, L762e Mutant Length = 120 Back     alignment and structure
>pdb|1GYW|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1 A753d Mutant Length = 128 Back     alignment and structure
>pdb|2E9G|A Chain A, Solution Structure Of The Alpha Adaptinc2 Domain From Human Adapter-Related Protein Complex 1 Gamma 2 Subunit Length = 131 Back     alignment and structure
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure
>pdb|1P4U|A Chain A, Crystal Structure Of Gga3 Gae Domain In Complex With Rabaptin-5 Peptide Length = 153 Back     alignment and structure
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query530
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 1e-108
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 7e-87
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 9e-84
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 8e-50
3zy7_A122 AP-1 complex subunit gamma-1; endocytosis, protein 3e-29
2e9g_A131 AP-1 complex subunit gamma-2; beta-sandwich, immun 3e-29
1iu1_A146 Gamma1-adaptin; coated PITS, endocytosis; 1.80A {H 7e-29
1gyu_A140 Adapter-related protein complex 1 gamma 1 subunit; 7e-29
1p4u_A153 ADP-ribosylation factor binding protein GGA3; prot 1e-26
3mnm_A123 ADP-ribosylation factor-binding protein GGA2; IG-l 6e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2db0_A253 253AA long hypothetical protein; heat repeats, hel 7e-10
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-05
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
 Score =  336 bits (862), Expect = e-108
 Identities = 244/396 (61%), Positives = 288/396 (72%), Gaps = 64/396 (16%)

Query: 1   MSSIRQVIN--DAVERDTYLPK--------YPAHFGQLECLKLIASSRFTDKRIGYLGAM 50
            ++IR      D   R   + K        YPAHFGQLECLKLIAS +FTDKRIGYLGAM
Sbjct: 36  CAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAM 95

Query: 51  LLLDERQDVHLLITNSLKNDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLMKSSN 110
           LLLDERQDVHLL+TN +KNDLN STQFV GLALCTLG + S EM RDLA EVE+L+K+SN
Sbjct: 96  LLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSN 155

Query: 111 AYIRKKAALCAYRIILKVPELMEIFLPATRLLLSDKNH-----------AIHQ------- 152
           +Y+RKKAALCA  +I KVPELME+FLPAT+ LL++KNH            + +       
Sbjct: 156 SYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215

Query: 153 ---------VKILK---------------------------LLRILGKNDVEASEAMNDI 176
                    V+ILK                           LLRILG+ND ++SEAMNDI
Sbjct: 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDI 275

Query: 177 LAQVATNTETSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALN 236
           LAQVATNTETSKNVGN ILYETVL+IMDIKSESGLRVLA+NILGRFLLNNDKNIRYVAL 
Sbjct: 276 LAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALT 335

Query: 237 TLLRTVYIDTSAVQRHRNTILECLKDPDVSIRRRALELSFALVNSANVRSMMKELLIFLE 296
           +LL+TV  D +AVQRHR+TI++CLKD DVSI+RRA+ELSFALVN  N+R MMKELL FL+
Sbjct: 336 SLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLD 395

Query: 297 KSEPDFKAHCSSNIVLCAERFAPNKRWHLDTLLKVL 332
             EP+FKA C+S I L AE++AP+KRWH+DT+++VL
Sbjct: 396 SCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVL 431
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A Length = 122 Back     alignment and structure
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 Back     alignment and structure
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2 Length = 146 Back     alignment and structure
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2 Length = 140 Back     alignment and structure
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A Length = 153 Back     alignment and structure
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae} Length = 123 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query530
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
3zy7_A122 AP-1 complex subunit gamma-1; endocytosis, protein 100.0
1iu1_A146 Gamma1-adaptin; coated PITS, endocytosis; 1.80A {H 100.0
3mnm_A123 ADP-ribosylation factor-binding protein GGA2; IG-l 100.0
1gyu_A140 Adapter-related protein complex 1 gamma 1 subunit; 99.98
2e9g_A131 AP-1 complex subunit gamma-2; beta-sandwich, immun 99.97
1p4u_A153 ADP-ribosylation factor binding protein GGA3; prot 99.97
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.43
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.43
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.33
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.25
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.18
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.18
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.16
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.15
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.14
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.08
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.06
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.05
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.03
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.01
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.99
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 98.99
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.94
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.92
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.9
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.87
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.85
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.83
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.81
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.8
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.79
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 98.77
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.75
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.68
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.67
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.67
1qgr_A876 Protein (importin beta subunit); transport recepto 98.66
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.65
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.64
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.64
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.6
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.59
1qgr_A 876 Protein (importin beta subunit); transport recepto 98.55
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.55
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.5
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.49
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.44
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.43
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.42
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.39
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.36
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.32
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.09
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.01
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.93
3nmz_A458 APC variant protein; protein-protein complex, arma 97.92
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.91
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.9
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.69
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.66
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.61
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.59
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.52
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.46
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.44
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.44
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.43
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.4
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.39
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.35
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.25
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.25
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.23
3grl_A651 General vesicular transport factor P115; vesicle t 97.13
3nmz_A458 APC variant protein; protein-protein complex, arma 97.05
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 96.89
3hs8_A 273 Adaptor protein complex AP-2, alpha 2 subunit; ada 96.84
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 96.69
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.32
1kyf_A 247 Alpha-adaptin C; protein-peptide complex, endocyto 96.31
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 95.91
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 95.8
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 95.53
2x1g_F971 Cadmus; transport protein, developmental protein, 95.38
3grl_A 651 General vesicular transport factor P115; vesicle t 95.22
2x19_B 963 Importin-13; nuclear transport, protein transport; 94.68
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 94.62
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 94.55
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 94.18
2x1g_F971 Cadmus; transport protein, developmental protein, 94.11
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 94.03
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 93.89
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 93.86
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 93.46
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 93.43
2x19_B963 Importin-13; nuclear transport, protein transport; 93.39
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 93.22
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 92.94
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 92.93
2g30_A 258 AP-2 complex subunit beta-1; alpha-helical ARH pep 92.72
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 92.62
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 92.39
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 92.39
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 91.83
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 91.05
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 88.49
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 87.88
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 87.16
1t06_A235 Hypothetical protein; structural genomics, PSI, pr 87.01
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 86.89
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 85.89
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 85.85
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 83.97
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 83.81
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 82.85
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 82.5
2b6c_A220 Hypothetical protein EF3068; structural genomis, D 80.92
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
Probab=100.00  E-value=1.7e-62  Score=544.25  Aligned_cols=372  Identities=27%  Similarity=0.466  Sum_probs=334.0

Q ss_pred             chhHHHHHH-----------HHHh--hhhcCCCCCCCchHHHHHhhcCCCCchhHHHHHHHHhhccCChhHHHHHHHHHH
Q psy4020           2 SSIRQVIND-----------AVER--DTYLPKYPAHFGQLECLKLIASSRFTDKRIGYLGAMLLLDERQDVHLLITNSLK   68 (530)
Q Consensus         2 ~ei~~ei~~-----------~~~~--~i~mlG~d~sf~~~~vikl~~S~~~~~Krl~YL~l~~~~~~~~e~~~L~~Nsl~   68 (530)
                      +|||+++++           +++|  |++|+|+|++|+|++|+++++|++++.||+||||++.++++++|+++|++|+|+
T Consensus        38 ~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~  117 (621)
T 2vgl_A           38 ANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIK  117 (621)
T ss_dssp             HHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            588888872           2333  778899999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCChhhhhHHHHHHhcCCChhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhChhhHH--hhHHHHHHhcC
Q psy4020          69 NDLNSSTQFVVGLALCTLGAIASPEMSRDLASEVERLM--KSSNAYIRKKAALCAYRIILKVPELME--IFLPATRLLLS  144 (530)
Q Consensus        69 kDL~s~n~~vr~lALr~l~~i~~~el~~~l~~~V~~~l--~~~~~yVRK~A~la~~ki~~~~p~~i~--~~i~~l~~lL~  144 (530)
                      |||+|+||++||+|||+||+|+++++++++.++|++++  .|++|||||+|++|++|+|+.+|+.++  .|.+.+.++|+
T Consensus       118 kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~  197 (621)
T 2vgl_A          118 NDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN  197 (621)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT
T ss_pred             HhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC
Confidence            99999999999999999999999999999999999999  999999999999999999999999998  89999999999


Q ss_pred             CCCCcc-----------------------------------------------------hHHHHHHHHHhhcCC-ChhhH
Q psy4020         145 DKNHAI-----------------------------------------------------HQVKILKLLRILGKN-DVEAS  170 (530)
Q Consensus       145 d~n~~V-----------------------------------------------------~qi~iL~lL~~l~~~-~~~~~  170 (530)
                      |+|++|                                                     +|++++++|+.|++. +|+..
T Consensus       198 d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~  277 (621)
T 2vgl_A          198 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVR  277 (621)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHH
Confidence            887655                                                     467788888888875 57888


Q ss_pred             HHHHHHHHHHhhccc--------CCCCCcchhHHHHHHHHhccCCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHh
Q psy4020         171 EAMNDILAQVATNTE--------TSKNVGNTILYETVLSIMDIKSESGLRVLAVNILGRFLLNNDKNIRYVALNTLLRTV  242 (530)
Q Consensus       171 ~~l~~iL~~~l~~~~--------~~~n~~~aV~~eai~~i~~l~~~~~l~~~~v~~L~~lL~s~d~niry~aL~~L~~l~  242 (530)
                      +.+.++|.+++++..        +++|+++||+|||+++++++..++++++.+++.|++||.++++|+||++|++|.+++
T Consensus       278 ~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~  357 (621)
T 2vgl_A          278 GRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA  357 (621)
T ss_dssp             HHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            888898888875421        122446699999999999999888999999999999999999999999999999999


Q ss_pred             ccCh--HHHHHHHHHHhhhcc-CCcHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhhcCchhhhhhHHHHHHHHHhhCC
Q psy4020         243 YIDT--SAVQRHRNTILECLK-DPDVSIRRRALELSFALVNSANVRSMMKELLIFLEKSEPDFKAHCSSNIVLCAERFAP  319 (530)
Q Consensus       243 ~~~p--~~~~~~~~~i~~~l~-d~d~~Ir~~aL~ll~~l~n~~Nv~~Iv~eL~~yl~~~d~~~~~~~i~~I~~la~k~~~  319 (530)
                      ..+|  ..+++|...|+.|++ |+|++||++||++++.++|++|++.|++||++|+.+.|.+||++++.+|+.||+||++
T Consensus       358 ~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~  437 (621)
T 2vgl_A          358 SSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAV  437 (621)
T ss_dssp             TCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCS
T ss_pred             hccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence            9886  789999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHhhhhhhcchhhhHHHHHHHHHHhhcCcchHHHHHhhcc-CCCCCCC
Q psy4020         320 NKRWHLDTLLKVLVANLLGFSNRALRDQRRALELSFALVNSANVRSMMKELLI-FLEKSEP  379 (530)
Q Consensus       320 ~~~~~vd~Ll~lL~~~~~~~v~~a~eiq~~a~e~~~ll~~~p~~r~~ile~l~-~l~~~~~  379 (530)
                      +++||+++|++++...-.++.+++      +..+..++.+.|++|+.+++++. ++++++.
T Consensus       438 ~~~~~v~~Ll~ll~~~~~~v~~ev------~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~  492 (621)
T 2vgl_A          438 DYTWYVDTILNLIRIAGDYVSEEV------WYRVIQIVINRDDVQGYAAKTVFEALQAPAC  492 (621)
T ss_dssp             STHHHHHHHHHHHHHHGGGSCSHH------HHHHHHHHGGGCSCHHHHHHHHHHHHTSSSC
T ss_pred             cHHHHHHHHHHHHHhhcccchHHH------HHHHHHHHhCChhHHHHHHHHHHHHHcCccc
Confidence            999999999999998544443322      34567888889999999988877 6766653
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A Back     alignment and structure
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2 Back     alignment and structure
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae} Back     alignment and structure
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2 Back     alignment and structure
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17 Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 530
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 2e-58
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 7e-58
d1gyva_120 b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo s 5e-31
d2dwya1129 b.1.10.2 (A:511-639) ADP-ribosylation factor bindi 1e-27
d1p4ua_145 b.1.10.2 (A:) ADP-ribosylation factor binding prot 4e-27
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 0.003
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 0.003
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 129 Back     information, alignment and structure
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query530
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 100.0
d1p4ua_145 ADP-ribosylation factor binding protein Gga3 domai 99.98
d2dwya1129 ADP-ribosylation factor binding protein Gga1 domai 99.98
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.16
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.08
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.9
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.83
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.66
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.65
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.62
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.61
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.55
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.47
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.37
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.37
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.35
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.34
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.2
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.1
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.06
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.02
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.01
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.99
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.97
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.74
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.72
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.66
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.4
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.14
d1kyfa1133 Alpha-adaptin AP2 ear domain, N-terminal subdomain 97.13
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.94
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.84
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 94.19
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 93.68
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 93.58
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 91.89
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 90.82
d1e42a1120 Beta2-adaptin AP2 ear domain, N-terminal subdomain 82.09
d2b6ca1213 Hypothetical protein EF3068 {Enterococcus faecalis 81.36
d1t06a_235 Hypothetical protein BC3264 {Bacillus cereus (stra 81.05
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1t06a_ a.118.1.17 (A:) Hypothetical protein BC3264 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]} Back     information, alignment and structure