Psyllid ID: psy4032

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MMGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccEEEEcccccccccccccccccccccccEEEEcEEEcccccccHHHHHHHHHHHHHHHHHcHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccEEEEEccEEEccccEEEcEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEHHcc
Coil and Loop (DISEMBL)
MMGVSLLAQAMlgpvgvismggaapngggyyhysysvvrgcdriipvdiyvpgcpptAEALMYGILQLQKKVKRMKILQSWYRR
Flexible Loop (DISEMBL)
MMGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Low Complexity Region (SEG)
MMGVSLLAQAMLGPVGVISMGGAAPNgggyyhysysvvrgCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Disordered region (IsUnstruct)
*****LLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWY**
Disordered Region (DISOPRED)
*MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKR*KI*******
Disordered Region (DISEMBL)
MMGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Disordered Region (DISPRO)
*MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
P42026	216	NADH dehydrogenase [ubiqu	yes	N/A	0.869	0.337	0.797	6e-28
P0CB83	213	NADH dehydrogenase [ubiqu	yes	N/A	0.869	0.342	0.770	1e-27
Q0MQI0	213	NADH dehydrogenase [ubiqu	yes	N/A	0.869	0.342	0.770	1e-27
P0CB84	213	NADH dehydrogenase [ubiqu	N/A	N/A	0.869	0.342	0.770	1e-27
Q0MQH9	213	NADH dehydrogenase [ubiqu	N/A	N/A	0.869	0.342	0.770	1e-27
O75251	213	NADH dehydrogenase [ubiqu	yes	N/A	0.869	0.342	0.770	2e-27
Q9DC70	224	NADH dehydrogenase [ubiqu	yes	N/A	0.869	0.325	0.770	2e-27
A8XFG2	199	Probable NADH dehydrogena	N/A	N/A	0.797	0.336	0.794	6e-27
Q94360	199	Probable NADH dehydrogena	yes	N/A	0.797	0.336	0.794	7e-27
O47950	226	NADH-ubiquinone oxidoredu	N/A	N/A	0.869	0.323	0.743	1e-26

>sp|P42026|NDUS7_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Bos taurus GN=NDUFS7 PE=1 SV=1

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  V+SMG  A NGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGILQLQK
Sbjct: 144 MPEPRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQK 202

Query: 71  KVKRMKILQSWYRR 84
           K+KR K L+ WYRR
Sbjct: 203 KIKREKRLRIWYRR 216

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 6EC: .EC: 9EC: 9EC: .EC: 3

>sp|P0CB83|NDUS7_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo abelii GN=NDUFS7 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  V+SMG  A NGGGYYHYSYSVVRGCDRI+PVDIY+PGCPPTAEAL+YGILQLQ+
Sbjct: 141 MPEPRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQR 199

Query: 71  KVKRMKILQSWYRR 84
           K+KR + LQ WYRR
Sbjct: 200 KIKRERRLQIWYRR 213

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQI0|NDUS7_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pan troglodytes GN=NDUFS7 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  V+SMG  A NGGGYYHYSYSVVRGCDRI+PVDIY+PGCPPTAEAL+YGILQLQ+
Sbjct: 141 MPEPRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQR 199

Query: 71  KVKRMKILQSWYRR 84
           K+KR + LQ WYRR
Sbjct: 200 KIKRERRLQIWYRR 213

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P0CB84|NDUS7_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo pygmaeus GN=NDUFS7 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  V+SMG  A NGGGYYHYSYSVVRGCDRI+PVDIY+PGCPPTAEAL+YGILQLQ+
Sbjct: 141 MPEPRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQR 199

Query: 71  KVKRMKILQSWYRR 84
           K+KR + LQ WYRR
Sbjct: 200 KIKRERRLQIWYRR 213

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQH9|NDUS7_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS7 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  V+SMG  A NGGGYYHYSYSVVRGCDRI+PVDIY+PGCPPTAEAL+YGILQLQ+
Sbjct: 141 MPEPRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQR 199

Query: 71  KVKRMKILQSWYRR 84
           K+KR + LQ WYRR
Sbjct: 200 KIKRERRLQIWYRR 213

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|O75251|NDUS7_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens GN=NDUFS7 PE=1 SV=3

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  V+SMG  A NGGGYYHYSYSVVRGCDRI+PVDIY+PGCPPTAEAL+YGILQLQ+
Sbjct: 141 MPEPRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQR 199

Query: 71  KVKRMKILQSWYRR 84
           K+KR + LQ WYRR
Sbjct: 200 KIKRERRLQIWYRR 213

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q9DC70|NDUS7_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Mus musculus GN=Ndufs7 PE=1 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  V+SMG  A NGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGILQLQ+
Sbjct: 152 MPEPRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQR 210

Query: 71  KVKRMKILQSWYRR 84
           K+KR + L+ WYRR
Sbjct: 211 KIKREQKLKIWYRR 224

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|A8XFG2|NDUS7_CAEBR Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Caenorhabditis briggsae GN=nduf-7 PE=3 SV=1

 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 61/68 (89%), Gaps = 1/68 (1%)

Query: 17  VISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMK 76
           VISMG  A NGGGYYHY+YSV+RGCDR+IPVDIYVPGCPPTAEAL+YG+LQLQKK+KR +
Sbjct: 133 VISMGSCA-NGGGYYHYAYSVLRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKR 191

Query: 77  ILQSWYRR 84
             Q WYRR
Sbjct: 192 EAQLWYRR 199

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Caenorhabditis briggsae (taxid: 6238)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q94360|NDUS7_CAEEL Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Caenorhabditis elegans GN=nduf-7 PE=3 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 61/68 (89%), Gaps = 1/68 (1%)

Query: 17  VISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMK 76
           VISMG  A NGGGYYHY+YSV+RGCDR+IPVDIYVPGCPPTAEAL+YG+LQLQKK+KR +
Sbjct: 133 VISMGSCA-NGGGYYHYAYSVLRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKR 191

Query: 77  ILQSWYRR 84
             Q WYRR
Sbjct: 192 EAQLWYRR 199

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|O47950|NDUS7_NEUCR NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=G17A4.170 PE=2 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG  A NGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPT+EALMYGI QLQ+
Sbjct: 154 MPDPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQR 212

Query: 71  KVKRMKILQSWYRR 84
           K++  KI + WYR+
Sbjct: 213 KMRNTKITRMWYRK 226

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
225718368	211	NADH dehydrogenase iron-sulfur protein 7	0.857	0.341	0.863	1e-28
195479097	221	GE15999 [Drosophila yakuba] gi|194188285	0.869	0.330	0.851	1e-28
18859983	221	CG9172, isoform A [Drosophila melanogast	0.869	0.330	0.851	1e-28
195357046	221	GM11675 [Drosophila sechellia] gi|194124	0.869	0.330	0.851	1e-28
194894035	221	GG19352 [Drosophila erecta] gi|190649643	0.869	0.330	0.851	1e-28
195567032	221	GD15767 [Drosophila simulans] gi|1942044	0.869	0.330	0.851	1e-28
195457088	229	GK17823 [Drosophila willistoni] gi|19417	0.869	0.318	0.851	1e-28
290562629	211	NADH dehydrogenase iron-sulfur protein 7	0.857	0.341	0.849	2e-28
225712904	211	NADH dehydrogenase iron-sulfur protein 7	0.857	0.341	0.849	2e-28
194763060	217	GF19983 [Drosophila ananassae] gi|190629	0.869	0.336	0.851	2e-28

>gi|225718368|gb|ACO15030.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Caligus clemensi]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/73 (86%), Positives = 66/73 (90%), Gaps = 1/73 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           ML P  VISMG  A NGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEALMYGILQLQK
Sbjct: 139 MLEPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQK 197

Query: 71  KVKRMKILQSWYR 83
           K+KRMK +QSWYR
Sbjct: 198 KIKRMKNVQSWYR 210

Source: Caligus clemensi

Species: Caligus clemensi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195479097|ref|XP_002100761.1| GE15999 [Drosophila yakuba] gi|194188285|gb|EDX01869.1| GE15999 [Drosophila yakuba]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 65/74 (87%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG  A NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYG+LQLQK
Sbjct: 149 MPEPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 71  KVKRMKILQSWYRR 84
           KVKRMK LQ WYR+
Sbjct: 208 KVKRMKTLQMWYRK 221

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18859983|ref|NP_573097.1| CG9172, isoform A [Drosophila melanogaster] gi|24642371|ref|NP_727921.1| CG9172, isoform B [Drosophila melanogaster] gi|7293168|gb|AAF48552.1| CG9172, isoform A [Drosophila melanogaster] gi|16769444|gb|AAL28941.1| LD31474p [Drosophila melanogaster] gi|22832322|gb|AAN09378.1| CG9172, isoform B [Drosophila melanogaster] gi|220944268|gb|ACL84677.1| CG9172-PA [synthetic construct] gi|220954204|gb|ACL89645.1| CG9172-PA [synthetic construct]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 65/74 (87%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG  A NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYG+LQLQK
Sbjct: 149 MPEPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 71  KVKRMKILQSWYRR 84
           KVKRMK LQ WYR+
Sbjct: 208 KVKRMKTLQMWYRK 221

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195357046|ref|XP_002044925.1| GM11675 [Drosophila sechellia] gi|194124267|gb|EDW46310.1| GM11675 [Drosophila sechellia]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 65/74 (87%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG  A NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYG+LQLQK
Sbjct: 149 MPEPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 71  KVKRMKILQSWYRR 84
           KVKRMK LQ WYR+
Sbjct: 208 KVKRMKTLQMWYRK 221

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194894035|ref|XP_001977994.1| GG19352 [Drosophila erecta] gi|190649643|gb|EDV46921.1| GG19352 [Drosophila erecta]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 65/74 (87%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG  A NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYG+LQLQK
Sbjct: 149 MPEPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 71  KVKRMKILQSWYRR 84
           KVKRMK LQ WYR+
Sbjct: 208 KVKRMKTLQMWYRK 221

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195567032|ref|XP_002107079.1| GD15767 [Drosophila simulans] gi|194204476|gb|EDX18052.1| GD15767 [Drosophila simulans]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 65/74 (87%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG  A NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYG+LQLQK
Sbjct: 149 MPEPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 207

Query: 71  KVKRMKILQSWYRR 84
           KVKRMK LQ WYR+
Sbjct: 208 KVKRMKTLQMWYRK 221

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195457088|ref|XP_002075420.1| GK17823 [Drosophila willistoni] gi|194171505|gb|EDW86406.1| GK17823 [Drosophila willistoni]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 65/74 (87%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG  A NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYG+LQLQK
Sbjct: 157 MPEPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 215

Query: 71  KVKRMKILQSWYRR 84
           KVKRMK LQ WYR+
Sbjct: 216 KVKRMKTLQMWYRK 229

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290562629|gb|ADD38710.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Lepeophtheirus salmonis]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 66/73 (90%), Gaps = 1/73 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           ML P  VISMG  A NGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEALMYGILQLQK
Sbjct: 139 MLEPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQK 197

Query: 71  KVKRMKILQSWYR 83
           K+KRMK +Q+WYR
Sbjct: 198 KIKRMKNVQAWYR 210

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225712904|gb|ACO12298.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor [Lepeophtheirus salmonis]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 66/73 (90%), Gaps = 1/73 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           ML P  VISMG  A NGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEALMYGILQLQK
Sbjct: 139 MLEPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQK 197

Query: 71  KVKRMKILQSWYR 83
           K+KRMK +Q+WYR
Sbjct: 198 KIKRMKNVQAWYR 210

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194763060|ref|XP_001963652.1| GF19983 [Drosophila ananassae] gi|190629311|gb|EDV44728.1| GF19983 [Drosophila ananassae]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 65/74 (87%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG  A NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYG+LQLQK
Sbjct: 145 MPEPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQK 203

Query: 71  KVKRMKILQSWYRR 84
           KVKRMK LQ WYR+
Sbjct: 204 KVKRMKTLQMWYRK 217

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
FB|FBgn0030718	221	CG9172 [Drosophila melanogaste	0.833	0.316	0.676	5.7e-20
FB|FBgn0039669	212	CG2014 [Drosophila melanogaste	0.833	0.330	0.661	1.2e-19
UNIPROTKB|A8WFQ0	179	NDUFS7 "NDUFS7 protein" [Bos t	0.833	0.391	0.619	3.6e-18
UNIPROTKB|P42026	216	NDUFS7 "NADH dehydrogenase [ub	0.833	0.324	0.619	3.6e-18
UNIPROTKB|E2R6E2	216	NDUFS7 "Uncharacterized protei	0.833	0.324	0.605	7.5e-18
UNIPROTKB|O75251	213	NDUFS7 "NADH dehydrogenase [ub	0.833	0.328	0.591	7.5e-18
UNIPROTKB|I3LHL4	218	NDUFS7 "Uncharacterized protei	0.833	0.321	0.605	7.5e-18
UNIPROTKB|I3LK43	216	NDUFS7 "Uncharacterized protei	0.833	0.324	0.605	7.5e-18
UNIPROTKB|P0CB83	213	NDUFS7 "NADH dehydrogenase [ub	0.833	0.328	0.591	7.5e-18
UNIPROTKB|P0CB84	213	NDUFS7 "NADH dehydrogenase [ub	0.833	0.328	0.591	7.5e-18

FB|FBgn0030718 CG9172 [Drosophila melanogaster (taxid:7227)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 48/71 (67%), Positives = 50/71 (70%)

Query:    14 PVGVISMGGAAPNXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK 73
             P  VISMG  A N              CDRIIPVDIYVPGCPPTAEALMYG+LQLQKKVK
Sbjct:   152 PRWVISMGSCA-NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKVK 210

Query:    74 RMKILQSWYRR 84
             RMK LQ WYR+
Sbjct:   211 RMKTLQMWYRK 221

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0048038 "quinone binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0000302 "response to reactive oxygen species" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

FB|FBgn0039669 CG2014 [Drosophila melanogaster (taxid:7227)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 47/71 (66%), Positives = 50/71 (70%)

Query:    14 PVGVISMGGAAPNXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK 73
             P  VISMG  A N              CDRI+PVDIYVPGCPPTAEALMYGILQLQKKVK
Sbjct:   143 PRWVISMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQKKVK 201

Query:    74 RMKILQSWYRR 84
             RM+ LQ WYR+
Sbjct:   202 RMRTLQMWYRK 212

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

UNIPROTKB|A8WFQ0 NDUFS7 "NDUFS7 protein" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 44/71 (61%), Positives = 49/71 (69%)

Query:    14 PVGVISMGGAAPNXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK 73
             P  V+SMG  A N              CDRI+PVDIYVPGCPPTAEAL+YGILQLQKK+K
Sbjct:   110 PRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIK 168

Query:    74 RMKILQSWYRR 84
             R K L+ WYRR
Sbjct:   169 REKRLRIWYRR 179

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|P42026 NDUFS7 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 44/71 (61%), Positives = 49/71 (69%)

Query:    14 PVGVISMGGAAPNXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK 73
             P  V+SMG  A N              CDRI+PVDIYVPGCPPTAEAL+YGILQLQKK+K
Sbjct:   147 PRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIK 205

Query:    74 RMKILQSWYRR 84
             R K L+ WYRR
Sbjct:   206 REKRLRIWYRR 216

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

UNIPROTKB|E2R6E2 NDUFS7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 43/71 (60%), Positives = 49/71 (69%)

Query:    14 PVGVISMGGAAPNXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK 73
             P  V+SMG  A N              CDRI+PVDIYVPGCPPTAEAL+YGILQLQ+K+K
Sbjct:   147 PRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIK 205

Query:    74 RMKILQSWYRR 84
             R K L+ WYRR
Sbjct:   206 REKKLRIWYRR 216

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|O75251 NDUFS7 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 42/71 (59%), Positives = 49/71 (69%)

Query:    14 PVGVISMGGAAPNXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK 73
             P  V+SMG  A N              CDRI+PVDIY+PGCPPTAEAL+YGILQLQ+K+K
Sbjct:   144 PRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIK 202

Query:    74 RMKILQSWYRR 84
             R + LQ WYRR
Sbjct:   203 RERRLQIWYRR 213

GO:0048038 "quinone binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0097060 "synaptic membrane" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0016655 "oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor" evidence=NAS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;IMP;NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0003954 "NADH dehydrogenase activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|I3LHL4 NDUFS7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 43/71 (60%), Positives = 49/71 (69%)

Query:    14 PVGVISMGGAAPNXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK 73
             P  V+SMG  A N              CDRI+PVDIYVPGCPPTAEAL+YGILQLQ+K+K
Sbjct:   149 PRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIK 207

Query:    74 RMKILQSWYRR 84
             R K L+ WYRR
Sbjct:   208 REKRLRIWYRR 218

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|I3LK43 NDUFS7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 43/71 (60%), Positives = 49/71 (69%)

Query:    14 PVGVISMGGAAPNXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK 73
             P  V+SMG  A N              CDRI+PVDIYVPGCPPTAEAL+YGILQLQ+K+K
Sbjct:   147 PRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIK 205

Query:    74 RMKILQSWYRR 84
             R K L+ WYRR
Sbjct:   206 REKRLRIWYRR 216

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|P0CB83 NDUFS7 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 42/71 (59%), Positives = 49/71 (69%)

Query:    14 PVGVISMGGAAPNXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK 73
             P  V+SMG  A N              CDRI+PVDIY+PGCPPTAEAL+YGILQLQ+K+K
Sbjct:   144 PRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIK 202

Query:    74 RMKILQSWYRR 84
             R + LQ WYRR
Sbjct:   203 RERRLQIWYRR 213

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

UNIPROTKB|P0CB84 NDUFS7 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial" [Pongo pygmaeus (taxid:9600)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 42/71 (59%), Positives = 49/71 (69%)

Query:    14 PVGVISMGGAAPNXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK 73
             P  V+SMG  A N              CDRI+PVDIY+PGCPPTAEAL+YGILQLQ+K+K
Sbjct:   144 PRYVVSMGSCA-NGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIK 202

Query:    74 RMKILQSWYRR 84
             R + LQ WYRR
Sbjct:   203 RERRLQIWYRR 213

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1LPW2	NUOB_RALME	1, ., 6, ., 9, 9, ., 5	0.75	0.7976	0.4187	yes	N/A
Q9DC70	NDUS7_MOUSE	1, ., 6, ., 9, 9, ., 3	0.7702	0.8690	0.3258	yes	N/A
Q54NI6	NDUS7_DICDI	No assigned EC number	0.7162	0.8690	0.4101	yes	N/A
Q2P0V6	NUOB_XANOM	1, ., 6, ., 9, 9, ., 5	0.7794	0.7976	0.3641	yes	N/A
Q8PJ41	NUOB_XANAC	1, ., 6, ., 9, 9, ., 5	0.7794	0.7976	0.3641	yes	N/A
B2I785	NUOB_XYLF2	1, ., 6, ., 9, 9, ., 5	0.7794	0.7976	0.3641	yes	N/A
Q42577	NDUS7_ARATH	1, ., 6, ., 9, 9, ., 3	0.7297	0.8690	0.3348	yes	N/A
A5CES0	NUOB_ORITB	1, ., 6, ., 9, 9, ., 5	0.7727	0.7738	0.3801	yes	N/A
Q5GXT2	NUOB_XANOR	1, ., 6, ., 9, 9, ., 5	0.7794	0.7976	0.3641	yes	N/A
Q9ZDH2	NUOB_RICPR	1, ., 6, ., 9, 9, ., 5	0.7656	0.75	0.3620	yes	N/A
A3PIW9	NUOB1_RHOS1	1, ., 6, ., 9, 9, ., 5	0.8125	0.75	0.3579	yes	N/A
B9KQW1	NUOB1_RHOSK	1, ., 6, ., 9, 9, ., 5	0.8125	0.75	0.3620	yes	N/A
Q87EQ4	NUOB_XYLFT	1, ., 6, ., 9, 9, ., 5	0.7794	0.7976	0.3641	yes	N/A
Q5P1E9	NUOB_AROAE	1, ., 6, ., 9, 9, ., 5	0.75	0.7976	0.4240	yes	N/A
Q7NZI0	NUOB1_CHRVO	1, ., 6, ., 9, 9, ., 5	0.75	0.7976	0.4240	yes	N/A
Q68X17	NUOB_RICTY	1, ., 6, ., 9, 9, ., 5	0.7656	0.75	0.3684	yes	N/A
Q2G5Y4	NUOB_NOVAD	1, ., 6, ., 9, 9, ., 5	0.7391	0.8095	0.3756	yes	N/A
Q0KCS9	NUOB_CUPNH	1, ., 6, ., 9, 9, ., 5	0.75	0.7976	0.4187	yes	N/A
Q3SEX7	NUOB_THIDA	1, ., 6, ., 9, 9, ., 5	0.75	0.7976	0.4240	yes	N/A
B2SVL8	NUOB_XANOP	1, ., 6, ., 9, 9, ., 5	0.7794	0.7976	0.3681	yes	N/A
Q28T75	NUOB_JANSC	1, ., 6, ., 9, 9, ., 5	0.8125	0.75	0.3559	yes	N/A
Q2RU39	NUOB_RHORT	1, ., 6, ., 9, 9, ., 5	0.7794	0.7976	0.3621	yes	N/A
Q473U2	NUOB_CUPPJ	1, ., 6, ., 9, 9, ., 5	0.75	0.7976	0.4187	yes	N/A
B3R3W8	NUOB_CUPTR	1, ., 6, ., 9, 9, ., 5	0.75	0.7976	0.4187	yes	N/A
O75251	NDUS7_HUMAN	1, ., 6, ., 9, 9, ., 3	0.7702	0.8690	0.3427	yes	N/A
Q82TU4	NUOB_NITEU	1, ., 6, ., 9, 9, ., 5	0.7647	0.7976	0.4240	yes	N/A
Q94360	NDUS7_CAEEL	1, ., 6, ., 9, 9, ., 3	0.7941	0.7976	0.3366	yes	N/A
B3CSG9	NUOB_ORITI	1, ., 6, ., 9, 9, ., 5	0.7727	0.7738	0.3801	yes	N/A
A1K5A9	NUOB1_AZOSB	1, ., 6, ., 9, 9, ., 5	0.75	0.7976	0.4240	yes	N/A
A5IHW2	NUOB_LEGPC	1, ., 6, ., 9, 9, ., 5	0.7285	0.8214	0.4367	yes	N/A
A1B497	NUOB_PARDP	1, ., 6, ., 9, 9, ., 5	0.7647	0.7976	0.3828	yes	N/A
C3PN71	NUOB_RICAE	1, ., 6, ., 9, 9, ., 5	0.7656	0.75	0.3620	yes	N/A
Q5X1A8	NUOB_LEGPA	1, ., 6, ., 9, 9, ., 5	0.7285	0.8214	0.4367	yes	N/A
Q5WT21	NUOB_LEGPL	1, ., 6, ., 9, 9, ., 5	0.7285	0.8214	0.4367	yes	N/A
Q2W3I5	NUOB_MAGSA	1, ., 6, ., 9, 9, ., 5	0.8281	0.75	0.3387	yes	N/A
Q3BRN0	NUOB_XANC5	1, ., 6, ., 9, 9, ., 5	0.7794	0.7976	0.3641	yes	N/A
Q5ZRT9	NUOB_LEGPH	1, ., 6, ., 9, 9, ., 5	0.7285	0.8214	0.4367	yes	N/A
Q0MQI0	NDUS7_PANTR	1, ., 6, ., 9, 9, ., 3	0.7702	0.8690	0.3427	yes	N/A
A5VAL8	NUOB_SPHWW	1, ., 6, ., 9, 9, ., 5	0.7536	0.8095	0.3636	yes	N/A
P42026	NDUS7_BOVIN	1, ., 6, ., 9, 9, ., 3	0.7972	0.8690	0.3379	yes	N/A
Q3J3G0	NUOB1_RHOS4	1, ., 6, ., 9, 9, ., 5	0.8125	0.75	0.3620	yes	N/A
Q31HF9	NUOB_THICR	1, ., 6, ., 9, 9, ., 5	0.75	0.7976	0.4240	yes	N/A
P0CB83	NDUS7_PONAB	1, ., 6, ., 9, 9, ., 3	0.7702	0.8690	0.3427	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.6.99.5	0.824
3rd Layer	1.6.99	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	84
PRK06411	183	PRK06411, PRK06411, NADH dehydrogenase subunit B;	4e-35
COG0377	194	COG0377, NuoB, NADH:ubiquinone oxidoreductase 20 k	4e-33
TIGR01957	145	TIGR01957, nuoB_fam, NADH-quinone oxidoreductase,	1e-31
CHL00023	225	CHL00023, ndhK, NADH dehydrogenase subunit K	7e-20
PRK14818	173	PRK14818, PRK14818, NADH dehydrogenase subunit B;	1e-19
PRK13292	788	PRK13292, PRK13292, trifunctional NADH dehydrogena	2e-19
PRK14816	182	PRK14816, PRK14816, NADH dehydrogenase subunit B;	3e-19
PRK14813	189	PRK14813, PRK14813, NADH dehydrogenase subunit B;	1e-18
PRK14819	264	PRK14819, PRK14819, NADH dehydrogenase subunit B;	2e-18
PRK14815	183	PRK14815, PRK14815, NADH dehydrogenase subunit B;	6e-17
COG3260	148	COG3260, COG3260, Ni,Fe-hydrogenase III small subu	1e-16
PRK14814	186	PRK14814, PRK14814, NADH dehydrogenase subunit B;	6e-16
PRK14820	180	PRK14820, PRK14820, NADH dehydrogenase subunit B;	4e-15
PRK14817	181	PRK14817, PRK14817, NADH dehydrogenase subunit B;	2e-14
pfam01058	122	pfam01058, Oxidored_q6, NADH ubiquinone oxidoreduc	2e-13
COG1941	247	COG1941, FrhG, Coenzyme F420-reducing hydrogenase,	6e-04

>gnl|CDD|235797 PRK06411, PRK06411, NADH dehydrogenase subunit B; Validated

 Score =  117 bits (294), Expect = 4e-35
 Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG  A N GG YHYSYSVV+G DRI+PVD+YVPGCPP  EAL+YGIL+LQK
Sbjct: 99  MPEPKWVISMGSCA-NSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQK 157

Query: 71  KVKRMKILQSWYRR 84
           K+++ +  +    R
Sbjct: 158 KIRQSERERKRGER 171

Length = 183

>gnl|CDD|223454 COG0377, NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]

 Score =  112 bits (282), Expect = 4e-33
 Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG +  N GG Y  SYSVV+G DR++PVD+Y+PGCPP  EAL+YGIL LQ+
Sbjct: 100 MPEPKWVISMG-SCANSGGMYWNSYSVVQGVDRVVPVDVYIPGCPPRPEALLYGILLLQE 158

Query: 71  KVKRMKILQSWYRR 84
           K++R          
Sbjct: 159 KIRREGRPLRDKPG 172

Length = 194

>gnl|CDD|233656 TIGR01957, nuoB_fam, NADH-quinone oxidoreductase, B subunit

 Score =  107 bits (268), Expect = 1e-31
 Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 1/64 (1%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG  A N GG +H SYSVV+G DRI+PVD+Y+PGCPP  EAL+YG+++LQK
Sbjct: 82  MPEPKWVISMGACA-NSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQK 140

Query: 71  KVKR 74
           K+KR
Sbjct: 141 KIKR 144

This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2 [Energy metabolism, Electron transport]. Length = 145

>gnl|CDD|214337 CHL00023, ndhK, NADH dehydrogenase subunit K

 Score = 79.0 bits (195), Expect = 7e-20
 Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 2   MGVSL--LAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAE 59
           M  SL  L + M  P  VI+MG     GG +   SYS VRG D++IPVD+Y+PGCPP  E
Sbjct: 85  MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 144

Query: 60  ALMYGILQLQKKVKR 74
           A++  I +L+KK+ R
Sbjct: 145 AVIDAITKLRKKISR 159

Length = 225

>gnl|CDD|173279 PRK14818, PRK14818, NADH dehydrogenase subunit B; Provisional

 Score = 77.3 bits (190), Expect = 1e-19
 Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 4   VSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMY 63
             LL   M  P  VISMG  + N GG +   YSV +G D++IPVD+YVPGCPP  EAL  
Sbjct: 88  ARLLYDQMPEPKYVISMGSCS-NCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTE 146

Query: 64  GILQLQKKVK 73
           G+L+LQ+ V+
Sbjct: 147 GLLRLQEIVR 156

Length = 173

>gnl|CDD|183955 PRK13292, PRK13292, trifunctional NADH dehydrogenase I subunit B/C/D; Provisional

 Score = 80.2 bits (198), Expect = 2e-19
 Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 7   LAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGIL 66
           L + M  P  VISMG  A N GG Y   YSVV+G ++I+PVD+Y+PGCPP  EA + G++
Sbjct: 83  LYEQMAEPKWVISMGSCA-NSGGMYDV-YSVVQGVNQILPVDVYIPGCPPRPEAFLQGLM 140

Query: 67  QLQKKVKR 74
            LQ+K++R
Sbjct: 141 LLQEKIRR 148

Length = 788

>gnl|CDD|173277 PRK14816, PRK14816, NADH dehydrogenase subunit B; Provisional

 Score = 76.5 bits (188), Expect = 3e-19
 Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 7   LAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGIL 66
           L   M  P  VI++GG A +GG +   SY V+ G D+I+PVD+Y+PGCPP  EA  YG++
Sbjct: 102 LYDQMADPKYVIAVGGCAVSGGPF-KKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMM 160

Query: 67  QLQKKVK 73
           QLQ+KVK
Sbjct: 161 QLQRKVK 167

Length = 182

>gnl|CDD|173274 PRK14813, PRK14813, NADH dehydrogenase subunit B; Provisional

 Score = 74.9 bits (184), Expect = 1e-18
 Identities = 34/74 (45%), Positives = 51/74 (68%)

Query: 4   VSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMY 63
           V  L + M  P  V+SMG  +  GG Y+ + Y V++G DRIIPVD+YVPGCPP  EAL+ 
Sbjct: 85  VVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIG 144

Query: 64  GILQLQKKVKRMKI 77
           G++++Q+ ++  +I
Sbjct: 145 GLMKVQELIRMEQI 158

Length = 189

>gnl|CDD|237822 PRK14819, PRK14819, NADH dehydrogenase subunit B; Provisional

 Score = 75.8 bits (186), Expect = 2e-18
 Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 4   VSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMY 63
           V  L   M  P  VISMG  A +GG +    Y+V+RG D +IPVD+Y+PGCPP  EAL++
Sbjct: 89  VVRLYNQMPEPRYVISMGACATSGGPFRD-GYNVLRGIDLLIPVDVYIPGCPPRPEALLH 147

Query: 64  GILQLQKKVKRMKILQS-WYR 83
            ++ LQK++    + +  WY 
Sbjct: 148 ALMTLQKQIDAQSLGRVRWYG 168

Length = 264

>gnl|CDD|237821 PRK14815, PRK14815, NADH dehydrogenase subunit B; Provisional

 Score = 70.3 bits (172), Expect = 6e-17
 Identities = 32/74 (43%), Positives = 51/74 (68%), Gaps = 2/74 (2%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VI+MG  A +GG Y   SYSV++G DRI+PVD+Y+ GCPP  EA++  +++LQK
Sbjct: 98  MPEPKWVIAMGACASSGGMYR--SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQK 155

Query: 71  KVKRMKILQSWYRR 84
           K+   +  ++ +++
Sbjct: 156 KIDTERAARTLFKK 169

Length = 183

>gnl|CDD|225799 COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion]

 Score = 68.9 bits (169), Expect = 1e-16
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 9   QAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQL 68
           +AM  P  VI++G A    GG +  SYSV    D++IPVD+ +PGCPP  EA++ G++  
Sbjct: 72  EAMPEPKIVIAVG-ACALSGGIFKDSYSVWGPVDKVIPVDVEIPGCPPRPEAILAGLVAA 130

Query: 69  QKKVKRMK 76
             K+++  
Sbjct: 131 LGKLEKKI 138

Length = 148

>gnl|CDD|173275 PRK14814, PRK14814, NADH dehydrogenase subunit B; Provisional

 Score = 68.1 bits (166), Expect = 6e-16
 Identities = 31/63 (49%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VIS+G  A +GG ++  +Y V++G DRI+PVD+YVPGCPP  EA++  +++LQ 
Sbjct: 98  MAEPKFVISVGACASSGGMFH--TYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQT 155

Query: 71  KVK 73
           K+K
Sbjct: 156 KLK 158

Length = 186

>gnl|CDD|184833 PRK14820, PRK14820, NADH dehydrogenase subunit B; Provisional

 Score = 65.6 bits (160), Expect = 4e-15
 Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  V+++G  A +GG +   +YSV++G DRIIPVD+YVPGCPP  E ++ G++++Q+
Sbjct: 98  MAEPRWVVAVGACASSGGIFD--TYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQE 155

Query: 71  KVK 73
            VK
Sbjct: 156 LVK 158

Length = 180

>gnl|CDD|173278 PRK14817, PRK14817, NADH dehydrogenase subunit B; Provisional

 Score = 64.2 bits (156), Expect = 2e-14
 Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 9   QAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQL 68
           + M  P  V++ G  A +GG  ++ +Y+ V+G DRIIPVD+YVPGCPP  E ++ GI+ L
Sbjct: 98  EQMADPKWVMAFGVCASSGG--FYDNYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLL 155

Query: 69  QKKVK 73
           QKK++
Sbjct: 156 QKKIQ 160

Length = 181

>gnl|CDD|216271 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase, 20 Kd subunit

 Score = 59.9 bits (146), Expect = 2e-13
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 17  VISMGGAAPNGG--GYYHYSYSV-VRGCDRIIPVDIYVPGCPPTAEALMYGILQL 68
           VI++G  A  GG     + SY V V     ++PVDI +PGCPP  EA++  +L L
Sbjct: 68  VIAVGTCAAYGGIPAAGNNSYGVGVGPVLEVVPVDINIPGCPPHPEAILGTLLAL 122

Length = 122

>gnl|CDD|224852 COG1941, FrhG, Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]

 Score = 36.2 bits (84), Expect = 6e-04
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 38  VRGCDRIIPVDIYVPGCPPTAEA 60
           V     +I VD  +PGCPP+ E 
Sbjct: 120 VVPLGEVIDVDYAIPGCPPSPEE 142

Length = 247

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
KOG1687|consensus	168		100.0
COG0377	194	NuoB NADH:ubiquinone oxidoreductase 20 kD subunit	100.0
PRK14818	173	NADH dehydrogenase subunit B; Provisional	99.97
TIGR01957	145	nuoB_fam NADH-quinone oxidoreductase, B subunit. T	99.96
PRK06411	183	NADH dehydrogenase subunit B; Validated	99.96
PRK14813	189	NADH dehydrogenase subunit B; Provisional	99.96
CHL00023	225	ndhK NADH dehydrogenase subunit K	99.95
PRK14816	182	NADH dehydrogenase subunit B; Provisional	99.95
COG3260	148	Ni,Fe-hydrogenase III small subunit [Energy produc	99.95
PRK14817	181	NADH dehydrogenase subunit B; Provisional	99.95
PRK14815	183	NADH dehydrogenase subunit B; Provisional	99.95
PRK14814	186	NADH dehydrogenase subunit B; Provisional	99.95
PRK14820	180	NADH dehydrogenase subunit B; Provisional	99.95
PRK14819	264	NADH dehydrogenase subunit B; Provisional	99.94
PRK13292	788	trifunctional NADH dehydrogenase I subunit B/C/D;	99.91
PF01058	131	Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd	99.89
TIGR03294	228	FrhG coenzyme F420 hydrogenase, subunit gamma. Thi	99.87
PRK10468	371	hydrogenase 2 small subunit; Provisional	99.8
TIGR00391	365	hydA hydrogenase (NiFe) small subunit (hydA). Call	99.78
COG1941	247	FrhG Coenzyme F420-reducing hydrogenase, gamma sub	99.77
COG1740	355	HyaA Ni,Fe-hydrogenase I small subunit [Energy pro	99.68

>KOG1687|consensus

Probab=100.00  E-value=2.2e-33  Score=194.23  Aligned_cols=81  Identities=74%  Similarity=1.289  Sum_probs=79.7

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhcccccccc
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWY   82 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~~~~~   82 (84)
                      +|+++|||||+||+||++|+|| .+||.|+.||++++++|++||||+++|||||++|+++++|++|++||++.+..|.||
T Consensus        88 alrkvYdQMPEpr~VisMGsCa-ngGGyyhysYSvvRGcDriiPVDiYvPGCPPtaEAllygilqLqkKi~R~r~~q~wy  166 (168)
T KOG1687|consen   88 ALRKVYDQMPEPRWVISMGSCA-NGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKKIKRIRPLQFWY  166 (168)
T ss_pred             HHHHHHhhCCCCeeEEEecccc-cCCceEEEEehhhccccceeeeeeecCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            7999999999999999999999 899999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q psy4032          83 RR   84 (84)
Q Consensus        83 ~~   84 (84)
                      |+
T Consensus       167 r~  168 (168)
T KOG1687|consen  167 RK  168 (168)
T ss_pred             cC
Confidence            96

>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]

Probab=100.00  E-value=4.9e-33  Score=198.57  Aligned_cols=80  Identities=50%  Similarity=0.830  Sum_probs=74.5

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhccccccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSW   81 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~~~~   81 (84)
                      -+|+++|||||+||+|||+|+|| ++||+|+.||++++++|.+||||+|||||||+||+++++|+.|+++|+++.....|
T Consensus        91 p~lr~~YdQMPePK~VIsMGsCa-~~GG~f~~sYsvV~g~D~~vPVDvyIPGCPPrPEAl~~gi~~Lq~KI~~~~~~~~~  169 (194)
T COG0377          91 PALRRVYDQMPEPKWVISMGSCA-NSGGMYWNSYSVVQGVDRVVPVDVYIPGCPPRPEALLYGILLLQEKIRREGRPLRD  169 (194)
T ss_pred             HHHHHHHHhCCCCcEEEEecccc-cCCCcccccceeeeccceeEeeeeecCCCCCCHHHHHHHHHHHHHHHHhccCcccc
Confidence            37999999999999999999999 89999999999999999999999999999999999999999999999986555544


Q ss_pred             c
Q psy4032          82 Y   82 (84)
Q Consensus        82 ~   82 (84)
                      +
T Consensus       170 ~  170 (194)
T COG0377         170 K  170 (194)
T ss_pred             c
Confidence            4

>PRK14818 NADH dehydrogenase subunit B; Provisional

Probab=99.97  E-value=9.1e-31  Score=185.16  Aligned_cols=75  Identities=48%  Similarity=0.834  Sum_probs=71.8

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKI   77 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~   77 (84)
                      .+|+++|||||+||+|||+|+|| ++||+|+++|+..+++++++|||++||||||+||+|+++|+.|++++++++.
T Consensus        86 ~~l~~~yeqmPePK~VIA~G~CA-~sGGif~~sY~~~~gvd~vIpVDvyIPGCPP~PeaIl~gil~L~~~i~~~~~  160 (173)
T PRK14818         86 ERARLLYDQMPEPKYVISMGSCS-NCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIVRSEPW  160 (173)
T ss_pred             HHHHHHHHhCCCCCEEEEecccc-ccCCcccCCcccccCCCCccCCcEEccCCCCCHHHHHHHHHHHHHHHhcccc
Confidence            57999999999999999999999 8999999999999999999999999999999999999999999999987643

>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit

Probab=99.96  E-value=8.7e-30  Score=176.01  Aligned_cols=73  Identities=58%  Similarity=1.021  Sum_probs=70.1

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRM   75 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~   75 (84)
                      .+|+++|||||+||+|||+|+|| ++||+|+++|+..+++++++|||++||||||+|++|+++|++|+++++++
T Consensus        73 ~~l~~~~e~~p~pk~VIA~GsCA-~~GGi~~~~y~~~~~v~~~ipVDi~IPGCPp~Pe~i~~~l~~l~~~~~~~  145 (145)
T TIGR01957        73 PALRRLYDQMPEPKWVISMGACA-NSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE  145 (145)
T ss_pred             HHHHHHHHhccCCceEEEeccee-ecCCCccCCCccccCcccccccceEeCCCCCCHHHHHHHHHHHHHHhhcC
Confidence            57999999999999999999999 99999999999999999999999999999999999999999999999853

This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.

>PRK06411 NADH dehydrogenase subunit B; Validated

Probab=99.96  E-value=1.3e-29  Score=180.63  Aligned_cols=77  Identities=58%  Similarity=1.010  Sum_probs=73.2

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhccccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQ   79 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~~   79 (84)
                      .+|+++|||||+||+|||+|+|| ++||+|+++|+...++++++|||++||||||+|++|+++|++++++++++....
T Consensus        90 ~~l~~~~e~mp~pk~VIA~GaCA-~~GGif~~sy~~~~gv~~~ipVDv~IPGCPP~Pe~il~~l~~l~~~i~~~~~~~  166 (183)
T PRK06411         90 PALRRLYDQMPEPKWVISMGSCA-NSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERER  166 (183)
T ss_pred             HHHHHHHHHcCcCCeEEEEeccc-ccCCcccCCCccccCcccccccceEeCCCCCCHHHHHHHHHHHHHHHhcccccc
Confidence            57999999999999999999999 999999999999999999999999999999999999999999999999876654

>PRK14813 NADH dehydrogenase subunit B; Provisional

Probab=99.96  E-value=2.7e-29  Score=179.75  Aligned_cols=79  Identities=46%  Similarity=0.759  Sum_probs=72.0

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCC-CCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhcccccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYH-YSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQS   80 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~-~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~~~   80 (84)
                      ++|+++|+|||+||+|||+|+|| ++||+|. ++|+..+|++++||||++||||||+||+|+++|+.+++++++++....
T Consensus        83 ~~l~~~y~qmPePK~VIA~GaCA-~sGG~~~~~sY~~~~gvd~vIpVDv~IPGCPP~PeaIl~gl~~l~~~i~~~~~~~~  161 (189)
T PRK14813         83 ERVVRLYEQMPEPRYVLSMGSCS-NCGGPYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIRMEQIGIS  161 (189)
T ss_pred             HHHHHHHHhCCCCCEEEEecccc-cCCCCcccCCcccccCCCCccCCcEEccCCCCCHHHHHHHHHHHHHHHHhcccccc
Confidence            57999999999999999999999 7777765 599999999999999999999999999999999999999999876544


Q ss_pred             c
Q psy4032          81 W   81 (84)
Q Consensus        81 ~   81 (84)
                      |
T Consensus       162 ~  162 (189)
T PRK14813        162 R  162 (189)
T ss_pred             h
Confidence            4

>CHL00023 ndhK NADH dehydrogenase subunit K

Probab=99.95  E-value=7.8e-29  Score=181.03  Aligned_cols=76  Identities=43%  Similarity=0.747  Sum_probs=71.7

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCC-CCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhcccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYH-YSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKIL   78 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~-~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~   78 (84)
                      .+|+++|||||+||+|||+|+|| ++||+|+ ++|++++|++++||||++||||||+||+|+++|+.|+++++++...
T Consensus        87 ~~L~rlyeqmPePK~VIA~GaCA-~sGGif~~dsy~~v~gvd~vIPVDv~IPGCPP~PeaIi~~l~~L~~ki~~~~~~  163 (225)
T CHL00023         87 PSLVRLYEQMPEPKYVIAMGACT-ITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYE  163 (225)
T ss_pred             HHHHHHHHhcCCCCeEEEEcccc-ccCCcccCCCcccccCccccceeeEEecCCCCCHHHHHHHHHHHHHHHhccccc
Confidence            47999999999999999999999 8999997 8999999999999999999999999999999999999999876543

>PRK14816 NADH dehydrogenase subunit B; Provisional

Probab=99.95  E-value=8.8e-29  Score=176.29  Aligned_cols=74  Identities=49%  Similarity=0.877  Sum_probs=71.1

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhcc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMK   76 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~   76 (84)
                      .+|+++|||||+||+|||+|+|| ++||+|+++|+...++++++|||++||||||+||+|+++|++|++++++++
T Consensus        97 ~~l~~~~e~~p~pK~VIAvGsCA-~~GGif~~sy~~~~gvd~vIpVDv~IPGCPP~Pe~Il~~l~~L~~ki~~~~  170 (182)
T PRK14816         97 PVLKRLYDQMADPKYVIAVGGCA-VSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK  170 (182)
T ss_pred             HHHHHHHHhcCCCCEEEEecccc-ccCCccccCCccCCCccccccccEEeeCcCCCHHHHHHHHHHHHHHhcccc
Confidence            58999999999999999999999 899999999999999999999999999999999999999999999998764

>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]

Probab=99.95  E-value=1.1e-28  Score=169.88  Aligned_cols=75  Identities=36%  Similarity=0.610  Sum_probs=71.0

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKI   77 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~   77 (84)
                      |+|+++||+||+||+|||+|+|| ++||+|.++|.+..|+|+++|||++||||||+|++|+++|++++.++.+..+
T Consensus        65 e~lkk~Yea~PePKiViA~GaCa-~~GGIf~~~~~v~gpvd~viPVDv~IPGCPP~P~~il~g~~~al~~~~k~~~  139 (148)
T COG3260          65 EPLKKAYEAMPEPKIVIAVGACA-LSGGIFKDSYSVWGPVDKVIPVDVEIPGCPPRPEAILAGLVAALGKLEKKIH  139 (148)
T ss_pred             HHHHHHHHhCCCCcEEEEEcccc-cCCceecccccccccccceeEeeeEcCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            68999999999999999999999 8999999999999999999999999999999999999999999988766443

>PRK14817 NADH dehydrogenase subunit B; Provisional

Probab=99.95  E-value=1.5e-28  Score=174.96  Aligned_cols=74  Identities=43%  Similarity=0.807  Sum_probs=70.0

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhcccc
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKIL   78 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~   78 (84)
                      +|+++|||||+||+|||+|+|| ++||+| ++|++.+++++++|||++||||||+|++|+++|++|+++++++++.
T Consensus        92 ~l~~~~e~~p~pK~VIAvGaCA-~~GGi~-~~y~~~~gv~~vvpVDv~IPGCPP~Pe~il~~l~~l~~ki~~~~~~  165 (181)
T PRK14817         92 ILQRVYEQMADPKWVMAFGVCA-SSGGFY-DNYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKIQNQSHK  165 (181)
T ss_pred             HHHHHHHHcccCCEEEEecccc-ccCCcC-CCcccccCccccceeeEEecCCCCCHHHHHHHHHHHHHHhhcCCcc
Confidence            5899999999999999999999 899988 7999999999999999999999999999999999999999876554

>PRK14815 NADH dehydrogenase subunit B; Provisional

Probab=99.95  E-value=2.2e-28  Score=174.32  Aligned_cols=76  Identities=43%  Similarity=0.844  Sum_probs=71.5

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhccccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQ   79 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~~   79 (84)
                      ++|+++|||||+||+|||+|+|| ++||+|+ +|++.+|+++++|||++||||||+|++|+++|+.|++++++++..+
T Consensus        89 ~~l~r~ye~~p~pK~VIAvGsCA-~~GGi~~-sy~~~~gv~~~ipVDv~IPGCPP~Pe~il~~l~~l~~~i~~~~~~~  164 (183)
T PRK14815         89 LAVRRIYDQMPEPKWVIAMGACA-SSGGMYR-SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTERAAR  164 (183)
T ss_pred             HHHHHHHHhCCCCCEEEEecccc-ccCCCcc-ccccccCccccccccEEecCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence            57999999999999999999999 8999995 8999999999999999999999999999999999999999876554

>PRK14814 NADH dehydrogenase subunit B; Provisional

Probab=99.95  E-value=8.3e-28  Score=171.78  Aligned_cols=76  Identities=42%  Similarity=0.804  Sum_probs=71.2

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhccccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQ   79 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~~   79 (84)
                      ++|+++|||||+||+|||+|+|| ++||+|+ +|+...++++++|||++||||||+|++|+++|++|+++++++....
T Consensus        89 ~~l~~~yeqmp~pk~VIAvGsCA-~~GGi~~-~y~~~~gv~~vvpVDv~IPGCPP~Pe~il~~l~~L~~~i~~~~~~~  164 (186)
T PRK14814         89 PVLRQIYDQMAEPKFVISVGACA-SSGGMFH-TYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKLKTQGLEA  164 (186)
T ss_pred             HHHHHHHHhcCCCCeEEEecccc-ccCCccC-cCCCCcCccccccccEEecCCCCCHHHHHHHHHHHHHHHhcccccc
Confidence            58999999999999999999999 9999996 7999999999999999999999999999999999999998865544

>PRK14820 NADH dehydrogenase subunit B; Provisional

Probab=99.95  E-value=9.8e-28  Score=170.70  Aligned_cols=76  Identities=39%  Similarity=0.764  Sum_probs=71.2

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhccccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQ   79 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~~   79 (84)
                      .+|+++|||||+||+|||+|+|| ++||+| ++|+...++++++|||++||||||+|++|+++|+++++++++++..+
T Consensus        89 ~~l~~~~e~~p~pk~VIAvGaCA-~~GGi~-~~y~~~~~v~~~ipVDv~IPGCPP~Pe~il~~l~~l~~~i~~~~~~~  164 (180)
T PRK14820         89 PVLKQVYLQMAEPRWVVAVGACA-SSGGIF-DTYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQELVKNESLRR  164 (180)
T ss_pred             HHHHHHHHhcCCCCeEEEEeccc-ccCCcc-ccccccccccccccccEEecCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence            47999999999999999999999 999999 68999999999999999999999999999999999999998875444

>PRK14819 NADH dehydrogenase subunit B; Provisional

Probab=99.94  E-value=1.2e-27  Score=177.62  Aligned_cols=81  Identities=43%  Similarity=0.769  Sum_probs=73.3

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhcc-cccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMK-ILQS   80 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~-~~~~   80 (84)
                      .+|+++|+|||+||+|||+|+|| ++||+|+++|+..++++++|+||++||||||+|++|+++|++|+++++..+ ..-.
T Consensus        87 ~~L~rlyeqmP~PK~VIAvGaCA-~~GGIf~~sY~v~~gId~vIPVDv~IPGCPP~Pe~Il~gLl~L~~ki~~d~~~Rp~  165 (264)
T PRK14819         87 PQVVRLYNQMPEPRYVISMGACA-TSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQSLGRVR  165 (264)
T ss_pred             HHHHHHHHhccCCCeEEEEcccc-ccCCccccCCCccCCccccccccEEecCCCCCHHHHHHHHHHHHhhcccccccCcc
Confidence            47899999999999999999999 999999999999999999999999999999999999999999999886543 1336


Q ss_pred             ccc
Q psy4032          81 WYR   83 (84)
Q Consensus        81 ~~~   83 (84)
                      ||+
T Consensus       166 ~~~  168 (264)
T PRK14819        166 WYG  168 (264)
T ss_pred             ccc
Confidence            765

>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional

Probab=99.91  E-value=8e-25  Score=181.22  Aligned_cols=74  Identities=47%  Similarity=0.871  Sum_probs=70.5

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKI   77 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~   77 (84)
                      .+|+++|||||+||+|||+|+|| ++||+| ++|+++.+++++||||++||||||+|++|+++|++|+++++.++.
T Consensus        78 ~~l~~~~~~~p~pk~via~G~Ca-~~GG~~-~~y~~~~g~~~~ipVDv~iPGCPP~Pe~i~~~i~~l~~~~~~~~~  151 (788)
T PRK13292         78 PSILRLYEQMAEPKWVISMGSCA-NSGGMY-DVYSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRREER  151 (788)
T ss_pred             HHHHHHHHhCCCCCEEEEecccc-cCCCCc-CccccccCcCCcccccEEccCCCCCHHHHHHHHHHHHHHhhcCcc
Confidence            57999999999999999999999 999999 799999999999999999999999999999999999999987664

>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=99.89  E-value=4.6e-24  Score=143.59  Aligned_cols=66  Identities=32%  Similarity=0.498  Sum_probs=53.4

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCC--CCCcc---ccCcccccccceeccCCCCCHHHHHHHHHHH
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYH--YSYSV---VRGCDRIIPVDIYVPGCPPTAEALMYGILQL   68 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~--~~~~~---~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l   68 (84)
                      ..++.++++++++|+|||+|+|| ++||+++  .+++.   +++++++++||++||||||+||+|+++|.+|
T Consensus        61 ~~~e~~~~~~~~a~~vIAvGtCA-~~GGi~~~~~~~~~~~~~~~~~~~~~VDi~IpGCPp~pd~i~~~l~~L  131 (131)
T PF01058_consen   61 EALEWLKELRPKAKAVIAVGTCA-SFGGIPAARNNPSVGDSVGPLLEVVPVDINIPGCPPHPDWILETLLAL  131 (131)
T ss_dssp             EHHHHHHHHHGCSSEEEEEHHHH-HH-TGGGSTTSTTEEE-HHHHHGCS-ECEEE-SSS--HHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCceeEcCCCcc-ccCCcccccccccccccccCcCCCccEEEEeeCCCCCHHHHHHHHhhC
Confidence            46789999999999999999999 9999994  44443   4678889999999999999999999999876

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....

>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma

Probab=99.87  E-value=8.9e-23  Score=148.42  Aligned_cols=71  Identities=24%  Similarity=0.408  Sum_probs=63.0

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCc---------cccCcccccccceeccCCCCCHHHHHHHHHHHHHHHh
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYS---------VVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK   73 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~---------~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~   73 (84)
                      .++++++++++||+|||+|||| ++||+|+.+++         ..+|++++|+||++||||||+|++|+++|.+++.+..
T Consensus        67 ~~~~~~~~~~~ak~vVA~GtCA-~~GGi~~~~~~~~~~~~~~~~~~~~~~~V~vdi~IpGCPp~p~~i~~~l~~ll~g~~  145 (228)
T TIGR03294        67 SLEEIKELREKAKVVVALGACA-ATGNFTRYSRGGQQAQPQHESFVPITDVIDVDLAIPGCPPSPEAIRNVCVALLNGDM  145 (228)
T ss_pred             HHHHHHHHhccCCEEEEeeccc-ccCCcccccCCcccCCCCCCCCcCHHHcccCCEEeeCCCCCHHHHHHHHHHHHcCCC
Confidence            6889999999999999999999 99999876543         4678899999999999999999999999999986544


Q ss_pred             h
Q psy4032          74 R   74 (84)
Q Consensus        74 ~   74 (84)
                      +
T Consensus       146 ~  146 (228)
T TIGR03294       146 E  146 (228)
T ss_pred             c
Confidence            3

This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.

>PRK10468 hydrogenase 2 small subunit; Provisional

Probab=99.80  E-value=5.9e-20  Score=142.26  Aligned_cols=81  Identities=21%  Similarity=0.383  Sum_probs=70.8

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCcc--ccCcccccccc--eeccCCCCCHHHHHHHHHHHH-H----HHh
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSV--VRGCDRIIPVD--IYVPGCPPTAEALMYGILQLQ-K----KVK   73 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~--~~~v~~~v~VD--~~IPGCPP~p~~i~~~l~~l~-~----~i~   73 (84)
                      .++.++++++++|+|||+|||| ++|||++.+++.  ..+++++++.+  ++||||||+|++|+.+|++++ .    .++
T Consensus       137 ~~e~l~~~a~~A~aVVAvGtCA-s~GGI~aa~pnptga~gv~~~l~~~PVINIPGCPp~P~~i~~tL~~l~~~g~lp~LD  215 (371)
T PRK10468        137 IVDHIRKAAEGAAAIIAIGSCS-AWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLD  215 (371)
T ss_pred             HHHHHHHHhccCCEEEEEeccc-ccCCcccCCCCCCCCccHHHhcCCCCeEEcCCCCCCHHHHHHHHHHHHhcCCCcccc
Confidence            5788999999999999999999 999999886664  55788887554  999999999999999999998 2    489


Q ss_pred             hcccccccccC
Q psy4032          74 RMKILQSWYRR   84 (84)
Q Consensus        74 ~~~~~~~~~~~   84 (84)
                      +.+||+.||.+
T Consensus       216 ~~gRPk~fyg~  226 (371)
T PRK10468        216 DKNRPTFAYGR  226 (371)
T ss_pred             ccCCcHHHhcC
Confidence            99999999863

>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA)

Probab=99.78  E-value=2.1e-19  Score=139.01  Aligned_cols=81  Identities=22%  Similarity=0.317  Sum_probs=69.7

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCc--cccCccccc--ccceeccCCCCCHHHHHHHHHHHH-H----HHh
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYS--VVRGCDRII--PVDIYVPGCPPTAEALMYGILQLQ-K----KVK   73 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~--~~~~v~~~v--~VD~~IPGCPP~p~~i~~~l~~l~-~----~i~   73 (84)
                      .++.+.+.++++|+|||+|||| ++|||++..++  ...|+++++  +.+++||||||+|++|+.+|++++ .    .++
T Consensus       139 ~~e~l~~~a~~A~aVIAvGtCA-s~GGI~aa~pnptga~~v~~vi~~~pvinIPGCPp~Pe~i~~tl~~~ll~G~lP~LD  217 (365)
T TIGR00391       139 IVEHIRKAAEGAAAIIAIGTCS-SWGGVQAAGPNPTGAVPLQKVIPDKPVINVPGCPPNPHNFLATVAYIITFGKLPKLD  217 (365)
T ss_pred             HHHHHHHHhhcCCEEEEEeccc-cccCccCCCCCCCCCcchhHhcCCCCeEEeCCCCCCHHHHHHHHHHHHHcCCCCCCC
Confidence            5788999999999999999999 99999987655  456889888  334999999999999999999975 3    478


Q ss_pred             hcccccccccC
Q psy4032          74 RMKILQSWYRR   84 (84)
Q Consensus        74 ~~~~~~~~~~~   84 (84)
                      +++||..||.+
T Consensus       218 ~~~RP~~fyg~  228 (365)
T TIGR00391       218 DKNRPTFAYGR  228 (365)
T ss_pred             CCCCchhhhcC
Confidence            89999988863

Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.

>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]

Probab=99.77  E-value=3.2e-19  Score=131.86  Aligned_cols=71  Identities=25%  Similarity=0.425  Sum_probs=61.8

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC-----------CC---------ccccCcccccccceeccCCCCCHHHHH
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY-----------SY---------SVVRGCDRIIPVDIYVPGCPPTAEALM   62 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~-----------~~---------~~~~~v~~~v~VD~~IPGCPP~p~~i~   62 (84)
                      -|+.+-|.+.++|+|||+|+|| ++||+.+.           .|         ..+.|++++|+||++||||||+|+.|.
T Consensus        66 ~lE~v~ElRekakivVA~GsCA-~~Ggv~~~~~~s~~e~l~~~y~~~~~~~~~~~v~Pl~evI~VD~~IpGCPP~~e~I~  144 (247)
T COG1941          66 ELELVKELREKAKIVVALGSCA-VTGGVQGLRNKSGEELLRPVYGDAKSTFNEESVVPLGEVIDVDYAIPGCPPSPEEIA  144 (247)
T ss_pred             HHHHHHHHHHhCcEEEEEecch-hcCCchhhhhccccccchhhhhcccCCCCccceEEchheeeeeeecCCCCcCHHHHH
Confidence            4677889999999999999999 89999642           13         357899999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy4032          63 YGILQLQKKVKR   74 (84)
Q Consensus        63 ~~l~~l~~~i~~   74 (84)
                      ++|.+++++-++
T Consensus       145 ~al~all~ge~p  156 (247)
T COG1941         145 RALTALLEGEEP  156 (247)
T ss_pred             HHHHHHHcCCCc
Confidence            999999876554

>COG1740 HyaA Ni,Fe-hydrogenase I small subunit [Energy production and conversion]

Probab=99.68  E-value=6.3e-17  Score=124.27  Aligned_cols=78  Identities=22%  Similarity=0.406  Sum_probs=66.4

Q ss_pred             HHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCcccccc--cceeccCCCCCHHHHHHHHHHHHHH-----Hhhc
Q psy4032           5 SLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGCDRIIP--VDIYVPGCPPTAEALMYGILQLQKK-----VKRM   75 (84)
Q Consensus         5 ~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v~~~v~--VD~~IPGCPP~p~~i~~~l~~l~~~-----i~~~   75 (84)
                      +.+-++...+++|||+|+|| ++|||++.  +.+...+++++++  --++||||||+||+|+.+|.+++-.     +++.
T Consensus       139 e~l~~aA~~A~aIiAvGtCA-s~GgI~AA~pnps~a~~i~ev~~~kpVINiPGCPp~pd~iv~tl~~~~~~gk~P~LD~~  217 (355)
T COG1740         139 EILRKAAEGASAIIAVGTCA-SWGGIQAAKPNPTGAGPLSEVIKDKPVINIPGCPPNPDWIVATLLHIVTFGKLPDLDEL  217 (355)
T ss_pred             HHHHHHhhcCceEEEEeccc-ccCCeeccCCCCCCcccceecccCCceeeCCCCCCCchhHHHHHHHHHHcCCCcchhhc
Confidence            44556788999999999999 99999976  4557788898873  2299999999999999999987754     8999


Q ss_pred             cccccccc
Q psy4032          76 KILQSWYR   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      +||+-||.
T Consensus       218 ~RPk~fyg  225 (355)
T COG1740         218 GRPKMFYG  225 (355)
T ss_pred             CCchhhhc
Confidence            99999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	84
2fug_6	181	Crystal Structure Of The Hydrophilic Domain Of Resp		3e-09

>pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus Length = 181

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 9   QAMLGPVGVISMGGAAPNXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQL 68
           + M  P  VISMG  A +               D ++PVD+YVPGCPP  EAL+Y ++QL
Sbjct: 97  EQMPDPKWVISMGACASSGGMFNNYAIVQN--VDSVVPVDVYVPGCPPRPEALIYAVMQL 154
Query: 69  QKKVK 73
           QKKV+
Sbjct: 155 QKKVR 159
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
3i9v_6	181	NADH-quinone oxidoreductase subunit 6; electron tr	6e-33
1cc1_S	283	Hydrogenase (small subunit); NI-Fe-Se hydrogenase,	6e-07
2wpn_A	317	Periplasmic [nifese] hydrogenase, small subunit; m	5e-06
1yq9_A	264	Periplasmic [NIFE] hydrogenase small subunit; oxid	4e-05
1h2a_S	317	Hydrogenase; SO ligand, hydrogen metabolism, Mg ce	6e-05
1wui_S	267	Periplasmic [NIFE] hydrogenase small subunit; high	9e-05
3uqy_S	335	Hydrogenase-1 small chain; membrane-bound hydrogen	1e-04
3ayx_B	283	Membrane-bound hydrogenase small subunit; oxidored	2e-04
1yqw_A	264	Periplasmic [NIFE] hydrogenase small subunit; NI-F	2e-04
3rgw_S	339	Membrane-bound hydrogenase (NIFE) small subunit H;	6e-04

>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6* Length = 181

 Score =  111 bits (278), Expect = 6e-33
 Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 11  MLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 70
           M  P  VISMG  A + GG ++ +Y++V+  D ++PVD+YVPGCPP  EAL+Y ++QLQK
Sbjct: 99  MPDPKWVISMGACA-SSGGMFN-NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQK 156

Query: 71  KVKRMKILQSWYR 83
           KV+     +   R
Sbjct: 157 KVRGQAYNERGER 169

>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1 Length = 283

 Score = 44.3 bits (104), Expect = 6e-07
 Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGG---GYYHYSYSV----VRGCDRIIPVDIYVPGCP 55
            + L+       +  +++G  +  GG      + + S         ++I  + + VPGCP
Sbjct: 106 MMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCP 165

Query: 56  PTAEALMYGILQL 68
           P  + ++  ++  
Sbjct: 166 PHPDWMVGTLVAA 178

>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris} Length = 317

 Score = 41.6 bits (97), Expect = 5e-06
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 4   VSLLAQAMLGPVGVISMGGAAPNGGG---YYHYSYSV----VRGCDRIIPVDIYVPGCPP 56
           V  L +       V+++G  A  GG        + +       G + I    + +PGCPP
Sbjct: 136 VDALKEFGPNAAAVLAVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPP 195

Query: 57  TAEALMYGILQLQKKVKRMKILQSWYRR 84
             + ++  ++     +K+  +       
Sbjct: 196 HPDWIVGTVVLALDAIKKNGLEGGLAEV 223

>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A Length = 264

 Score = 38.8 bits (90), Expect = 4e-05
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGGGYY-HYSYSVVRGCDRIIPV----DIYVPGCPPT 57
              + A+       VI++G  A  GG      + +   G +  +       I + GCPP 
Sbjct: 92  MYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPN 151

Query: 58  AEALMYGILQL 68
               +  ++ L
Sbjct: 152 PMNFVGTVVHL 162

>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 Length = 317

 Score = 38.5 bits (89), Expect = 6e-05
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGGG-YYHYSYSVVRGCDRIIP----VDIYVPGCPPT 57
            + + ++ +     VI+ G  A  GG      + +  +G +  +       I + GCPP 
Sbjct: 144 MLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPN 203

Query: 58  AEALMYGILQ 67
              L+  I+ 
Sbjct: 204 PYNLVGTIVY 213

>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A* Length = 267

 Score = 38.0 bits (88), Expect = 9e-05
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 17  VISMGGAAPNGGG-YYHYSYSVVRGCDRIIP----VDIYVPGCPPTAEALMYGILQ 67
           VI+ G  A  GG      + +  +G +  +       I + GCPP    L+  I+ 
Sbjct: 108 VIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVY 163

>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S* Length = 335

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGGGYY-HYSYSVVRGCDRIIP--VDIYVPGCPPTAE 59
            +  L +A  G   +I+ G  A  G       + +     D++I     I VPGCPP  +
Sbjct: 95  FIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPD 154

Query: 60  ALMYGILQL 68
            +   I  +
Sbjct: 155 VMSAIITYM 163

>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B Length = 283

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGGGYY-HYSYSVVRGCDRIIPVD-----IYVPGCPP 56
               L +       +IS G  A  G       + +      + +        I VPGCPP
Sbjct: 101 FSEQLKRMADDAKAIISWGSCASWGCVQAAKPNPTQATPVHKFLGGGYDKPIIKVPGCPP 160

Query: 57  TAEALMYGILQL 68
            AE +   I  +
Sbjct: 161 IAEVMTGVITYM 172

>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S Length = 264

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGGGYY-HYSYSVVRGCDRIIPVDIY-VPGCPPTAEA 60
            +    +A     G+I +G  +  GG      + S  +G    + V    +PGCPP    
Sbjct: 94  MIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPIN 153

Query: 61  LMYGILQL 68
            +  ++ +
Sbjct: 154 FVGAVVHV 161

>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha} Length = 339

 Score = 35.4 bits (81), Expect = 6e-04
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 17  VISMGGAAPNGGGYY-HYSYSVVRGCDRIIPVD--IYVPGCPPTAEALMYGILQL 68
           +IS G  A  G       + +      ++I     I VPGCPP AE +   I  +
Sbjct: 109 IISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCPPIAEVMTGVITYM 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
3i9v_6	181	NADH-quinone oxidoreductase subunit 6; electron tr	99.96
1wui_S	267	Periplasmic [NIFE] hydrogenase small subunit; high	99.92
1h2a_S	317	Hydrogenase; SO ligand, hydrogen metabolism, Mg ce	99.91
1yq9_A	264	Periplasmic [NIFE] hydrogenase small subunit; oxid	99.91
3ayx_B	283	Membrane-bound hydrogenase small subunit; oxidored	99.91
3rgw_S	339	Membrane-bound hydrogenase (NIFE) small subunit H;	99.89
2wpn_A	317	Periplasmic [nifese] hydrogenase, small subunit; m	99.89
3myr_A	269	Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydr	99.89
1yqw_A	264	Periplasmic [NIFE] hydrogenase small subunit; NI-F	99.88
3uqy_S	335	Hydrogenase-1 small chain; membrane-bound hydrogen	99.88
1cc1_S	283	Hydrogenase (small subunit); NI-Fe-Se hydrogenase,	99.87

>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*

Probab=99.96  E-value=2.6e-30  Score=182.97  Aligned_cols=80  Identities=43%  Similarity=0.754  Sum_probs=75.4

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhccccccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSW   81 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~~~~   81 (84)
                      .+|+++|||||+||+|||+|+|| ++||+| ++|++++|+++++|||+|||||||+|++|+++|++|++++++++..+.|
T Consensus        90 ~~l~~~~e~~p~pk~VIAvGsCA-~~GGi~-~~y~~~~gvd~iipVDv~IPGCPP~Pe~il~~l~~l~~ki~~~~~~~~~  167 (181)
T 3i9v_6           90 PVMRRVWEQMPDPKWVISMGACA-SSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERG  167 (181)
T ss_dssp             HHHHHHHHSSCSSCCEEEEHHHH-HSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHTTCCBCTTS
T ss_pred             HHHHHHHHHcCCCceEEEeeccc-ccCCCC-CCCcccCCcccCCCccEEeeCCCCCHHHHHHHHHHHHHHHhhccccccc
Confidence            37899999999999999999999 999999 8999999999999999999999999999999999999999998887766


Q ss_pred             cc
Q psy4032          82 YR   83 (84)
Q Consensus        82 ~~   83 (84)
                      .+
T Consensus       168 ~~  169 (181)
T 3i9v_6          168 ER  169 (181)
T ss_dssp             CB
T ss_pred             cc
Confidence            53

>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*

Probab=99.92  E-value=2.9e-26  Score=169.46  Aligned_cols=81  Identities=20%  Similarity=0.344  Sum_probs=73.1

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCc--cccCcccccc---c-ceeccCCCCCHHHHHHHHHHHH-HH----
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYS--VVRGCDRIIP---V-DIYVPGCPPTAEALMYGILQLQ-KK----   71 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~--~~~~v~~~v~---V-D~~IPGCPP~p~~i~~~l~~l~-~~----   71 (84)
                      +++++||+|++||+|||+|||| ++||+|+.+|+  .+.|++++|+   | |++||||||+||+|+++|++|+ .+    
T Consensus        94 ~l~~~~e~~~~ak~VIAvGsCA-~~GGi~a~~~n~t~~~gv~~vv~~~~vpdi~IPGCPP~Pe~i~~~l~~ll~~g~~p~  172 (267)
T 1wui_S           94 MLDICSRILPKAQAVIAYGTCA-TFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLKNKAAPE  172 (267)
T ss_dssp             HHHHHHHHGGGSSEEEEESHHH-HHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHhccCCEEEEeeecc-ccCCCCCCcCCCcCCCCHHHhcCcCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCcC
Confidence            5899999999999999999999 99999998665  7789999999   7 9999999999999999999975 44    


Q ss_pred             HhhcccccccccC
Q psy4032          72 VKRMKILQSWYRR   84 (84)
Q Consensus        72 i~~~~~~~~~~~~   84 (84)
                      +++.+|++.||.+
T Consensus       173 ld~~~RP~~~~~~  185 (267)
T 1wui_S          173 LDSLNRPTMFFGQ  185 (267)
T ss_dssp             BCTTSCBHHHHSS
T ss_pred             ccccCCchhhhCC
Confidence            6788899888853

>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1

Probab=99.91  E-value=7.3e-26  Score=170.89  Aligned_cols=81  Identities=20%  Similarity=0.347  Sum_probs=73.1

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCC--CccccCcccccc---c-ceeccCCCCCHHHHHHHHHHHH-HH----
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYS--YSVVRGCDRIIP---V-DIYVPGCPPTAEALMYGILQLQ-KK----   71 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~--~~~~~~v~~~v~---V-D~~IPGCPP~p~~i~~~l~~l~-~~----   71 (84)
                      +++++||+|++||+|||+|+|| ++||+|+.+  ++.+.|++++|+   | |++||||||+||+|+++|++|+ .+    
T Consensus       144 ~l~~l~e~~~~ak~VIAvGsCA-~~GGi~a~~~npt~~~gv~~vvp~~~vpdi~IPGCPP~Pe~i~~~l~~lL~~g~~p~  222 (317)
T 1h2a_S          144 MLDICSRILPKAQAVIAYGTCA-TFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLKNKAAPE  222 (317)
T ss_dssp             HHHHHHHHGGGCSEEEEESHHH-HHCCGGGSTTCTTCEECHHHHHGGGTCCCBCCCCSSCCHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHhccCCEEEEecccc-ccCCcCCCCCCCccCcCHHHhcCcCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCCC
Confidence            5899999999999999999999 999999874  558999999999   8 9999999999999999999986 43    


Q ss_pred             HhhcccccccccC
Q psy4032          72 VKRMKILQSWYRR   84 (84)
Q Consensus        72 i~~~~~~~~~~~~   84 (84)
                      +++.+|++.||.+
T Consensus       223 Ld~~~RP~~~~~~  235 (317)
T 1h2a_S          223 LDSLNRPTMFFGQ  235 (317)
T ss_dssp             BCTTSCBHHHHSS
T ss_pred             ccccCCchhhhcC
Confidence            7888899888853

>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A

Probab=99.91  E-value=1.5e-25  Score=165.60  Aligned_cols=81  Identities=17%  Similarity=0.293  Sum_probs=73.7

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCcccccc----cceeccCCCCCHHHHHHHHHHHHH----HH
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGCDRIIP----VDIYVPGCPPTAEALMYGILQLQK----KV   72 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v~~~v~----VD~~IPGCPP~p~~i~~~l~~l~~----~i   72 (84)
                      .++++||+|++||+|||+|+|| ++||+|+.  +++...|++++++    +|++||||||+|++|+++|++|+.    .+
T Consensus        92 ~~~~l~~~~~~~k~VIA~GsCA-~~GGi~a~~~n~~~~~gv~~~l~~~~~~di~IPGCPP~Pe~i~~~l~~ll~~~~p~L  170 (264)
T 1yq9_A           92 MYDICAEVAPKAKAVIAIGTCA-TYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLTKGMPEL  170 (264)
T ss_dssp             HHHHHHHHGGGSSEEEEEHHHH-HHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHTCSCCB
T ss_pred             HHHHHHHHhccCCEEEEecccc-ccCCCCCCCCCCccccChhHhccCCCCeEEEEECCCCCHHHHHHHHHHHHhCCCCCc
Confidence            4899999999999999999999 99999976  6778899999998    899999999999999999999998    46


Q ss_pred             hhcccccccccC
Q psy4032          73 KRMKILQSWYRR   84 (84)
Q Consensus        73 ~~~~~~~~~~~~   84 (84)
                      ++.+|++.||.+
T Consensus       171 d~~~RP~~~~~~  182 (264)
T 1yq9_A          171 DKQGRPVMFFGE  182 (264)
T ss_dssp             CTTSCBHHHHSS
T ss_pred             cccCCchhhhCC
Confidence            778888888753

>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B

Probab=99.91  E-value=1.8e-25  Score=166.64  Aligned_cols=81  Identities=25%  Similarity=0.298  Sum_probs=74.1

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCcccccc--cc---eeccCCCCCHHHHHHHHHH-HHHH---
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGCDRIIP--VD---IYVPGCPPTAEALMYGILQ-LQKK---   71 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v~~~v~--VD---~~IPGCPP~p~~i~~~l~~-l~~~---   71 (84)
                      +++++||+|++||+|||+|+|| ++||+|+.  +|+.+.|++++++  ||   ++||||||+|++|+++|++ |+.+   
T Consensus       101 ~l~~~~~~~~~ak~VIA~GsCA-~~GGi~a~~pn~~~~~gv~~~i~~~vd~pvi~IPGCPP~Pe~i~~~l~~~Ll~G~~p  179 (283)
T 3ayx_B          101 FSEQLKRMADDAKAIISWGSCA-SWGCVQAAKPNPTQATPVHKFLGGGYDKPIIKVPGCPPIAEVMTGVITYMLTFDRIP  179 (283)
T ss_dssp             HHHHHHHHHHTEEEEEEEHHHH-HTCTGGGSTTCTTCBCCHHHHHCTTCCSCEEEECSSSCCHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHcccCCEEEEeeecc-ccCCCCCCCCCCccCcChhHhccccCCCceEEeeCCCCCHHHHHHHHHHHHHcCCCC
Confidence            5899999999999999999999 99999987  6889999999999  99   9999999999999999999 5555   


Q ss_pred             -HhhcccccccccC
Q psy4032          72 -VKRMKILQSWYRR   84 (84)
Q Consensus        72 -i~~~~~~~~~~~~   84 (84)
                       ++++.|++.||.+
T Consensus       180 ~Ld~~~RP~~~y~~  193 (283)
T 3ayx_B          180 ELDRQGRPKMFYSQ  193 (283)
T ss_dssp             CBCTTSCBHHHHSS
T ss_pred             CcccccCchhhhCC
Confidence             7888899988853

>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}

Probab=99.89  E-value=5.2e-24  Score=162.15  Aligned_cols=80  Identities=24%  Similarity=0.292  Sum_probs=71.8

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCC--ccccCcccccc--cceeccCCCCCHHHHHHHHHHHHH-H----Hh
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSY--SVVRGCDRIIP--VDIYVPGCPPTAEALMYGILQLQK-K----VK   73 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~--~~~~~v~~~v~--VD~~IPGCPP~p~~i~~~l~~l~~-~----i~   73 (84)
                      .++++||+|++||+|||+|+|| ++||+|+.++  +...+++++++  ||++||||||+|++|+++|++++. +    ++
T Consensus        95 ~~e~l~e~~~~~k~VIAvGtCA-~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPP~Pe~i~~~l~~ll~~G~~p~LD  173 (339)
T 3rgw_S           95 FIEQLKYVAKDAKAIISWGSCA-SWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCPPIAEVMTGVITYMLTFDRIPELD  173 (339)
T ss_dssp             HHHHHHHHHTTCSEEEEEHHHH-HTCTGGGSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHHHHSSCCCBC
T ss_pred             HHHHHHHHccCCCEEEEecccc-ccCCcCCCCCCccccCCHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCC
Confidence            4899999999999999999999 9999998754  56789999998  999999999999999999999883 3    57


Q ss_pred             hccccccccc
Q psy4032          74 RMKILQSWYR   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      +++||..||.
T Consensus       174 ~~~RP~~fy~  183 (339)
T 3rgw_S          174 RQGRPKMFYS  183 (339)
T ss_dssp             TTSCBHHHHS
T ss_pred             cccCchhhhC
Confidence            7888888875

>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}

Probab=99.89  E-value=2.3e-24  Score=162.67  Aligned_cols=80  Identities=16%  Similarity=0.270  Sum_probs=71.4

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCC--CCCccccCccccc-----cc-ceeccCCCCCHHHHHHHHHHHHHHH--
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYH--YSYSVVRGCDRII-----PV-DIYVPGCPPTAEALMYGILQLQKKV--   72 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~--~~~~~~~~v~~~v-----~V-D~~IPGCPP~p~~i~~~l~~l~~~i--   72 (84)
                      .+++++++|++||+|||+|||| ++||+|+  .+|+...++++++     ++ |++||||||+||+|+++|++|+.+.  
T Consensus       135 ~~e~l~e~~~~ak~VIAvGsCA-~~GGI~a~~~n~t~~~gv~~il~~~~~~vp~I~IPGCPP~Pe~i~~~L~~ll~~~~~  213 (317)
T 2wpn_A          135 MVDALKEFGPNAAAVLAVGTCA-AYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWIVGTVVLALDAIKK  213 (317)
T ss_dssp             HHHHHHHHGGGEEEEEEEHHHH-HHCTGGGSTTCCSCEECHHHHHHHTTCCCCEEEECSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCEEEEecccc-ccCCCCCCCCCCccccCHHHHhhccCCCCCeEEeeCCCCCHHHHHHHHHHHHhcccc
Confidence            4899999999999999999999 9999997  4788889999998     67 9999999999999999999999877  


Q ss_pred             --------------hhccccccccc
Q psy4032          73 --------------KRMKILQSWYR   83 (84)
Q Consensus        73 --------------~~~~~~~~~~~   83 (84)
                                    ++..|++.||.
T Consensus       214 ~~~~~g~~~~~p~Ld~~~RP~~~~~  238 (317)
T 2wpn_A          214 NGLEGGLAEVVKVLDSDGRPTPFFG  238 (317)
T ss_dssp             HHHHHHHHHHHTTBCTTSCBHHHHS
T ss_pred             cccccccccCCCCccccCCchhhcC
Confidence                          45667777764

>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0

Probab=99.89  E-value=1.3e-24  Score=161.11  Aligned_cols=81  Identities=21%  Similarity=0.272  Sum_probs=72.3

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCC--CccccCccccc--ccceeccCCCCCHHHHHHHHHHHH-HH----Hh
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYS--YSVVRGCDRII--PVDIYVPGCPPTAEALMYGILQLQ-KK----VK   73 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~--~~~~~~v~~~v--~VD~~IPGCPP~p~~i~~~l~~l~-~~----i~   73 (84)
                      .++.++|+|++||+|||+|+|| ++||+|+.+  ++...|+++++  +||++||||||+|++|+++|++|+ .+    ++
T Consensus        93 ~~e~l~e~~~~~k~VIA~G~CA-~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPp~Pe~i~~~l~~ll~~G~~p~Ld  171 (269)
T 3myr_A           93 NYSILMETVEHAAAVIAVGTCA-AFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFGRLPELD  171 (269)
T ss_dssp             HHHHHHHHHTTCSEEEEEHHHH-HHCHHHHSTTCTTCEECHHHHCCSSCEEEECSSSCCHHHHHHHHHHHHHHSSCCCBC
T ss_pred             HHHHHHHHcccCCEEEEecccc-ccCCccCCCCCccccCCHHHhCCCCCEEEecCCCCCHHHHHHHHHHHHHcCCCCCCC
Confidence            4789999999999999999999 999999865  45678999999  999999999999999999999998 33    57


Q ss_pred             hcccccccccC
Q psy4032          74 RMKILQSWYRR   84 (84)
Q Consensus        74 ~~~~~~~~~~~   84 (84)
                      +.+|++.||.+
T Consensus       172 ~~~RP~~~y~~  182 (269)
T 3myr_A          172 GYGRPLAFYGQ  182 (269)
T ss_dssp             TTSCBHHHHSS
T ss_pred             cccCchHHhCC
Confidence            78888888853

>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S

Probab=99.88  E-value=3.8e-24  Score=158.08  Aligned_cols=79  Identities=19%  Similarity=0.368  Sum_probs=70.7

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCccc--ccccceeccCCCCCHHHHHHHHHHHHH----HHhh
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGCDR--IIPVDIYVPGCPPTAEALMYGILQLQK----KVKR   74 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v~~--~v~VD~~IPGCPP~p~~i~~~l~~l~~----~i~~   74 (84)
                      +++++||+|++||+|||+|+|| ++||+|+.  +++...++++  .+|| ++||||||+|++|+++|++|+.    .+++
T Consensus        94 ~~~~~~~~~~~~k~VIA~GsCA-~~GGi~a~~~n~~~~~gv~~v~~~PV-i~IPGCPP~Pe~i~~~l~~ll~~~~p~Ld~  171 (264)
T 1yqw_A           94 MIETTKKAAAKAKGIICIGTCS-AYGGVQKAKPNPSQAKGVSEALGVKT-INIPGCPPNPINFVGAVVHVLTKGIPDLDE  171 (264)
T ss_dssp             HHHHHHHHHHTCSCEEEESHHH-HHCCGGGSTTCTTCEECHHHHHTSCC-EEECSSSCCHHHHHHHHHHHHHTCCCCBCT
T ss_pred             HHHHHHHHhcCCCEEEEecccc-ccCCccCCCCCCcccccccccCCCCE-EEeeCCCCCHHHHHHHHHHHHhCCCccccc
Confidence            5899999999999999999999 99999987  5667889987  6788 9999999999999999999998    5677


Q ss_pred             ccccccccc
Q psy4032          75 MKILQSWYR   83 (84)
Q Consensus        75 ~~~~~~~~~   83 (84)
                      .+|++.||.
T Consensus       172 ~~RP~~~~~  180 (264)
T 1yqw_A          172 NGRPKLFYG  180 (264)
T ss_dssp             TSCBHHHHS
T ss_pred             cCCchhhcC
Confidence            788887775

>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*

Probab=99.88  E-value=3e-24  Score=163.22  Aligned_cols=80  Identities=26%  Similarity=0.333  Sum_probs=71.4

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCC--ccccCcccccc--cceeccCCCCCHHHHHHHHHHHH-HH----Hh
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSY--SVVRGCDRIIP--VDIYVPGCPPTAEALMYGILQLQ-KK----VK   73 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~--~~~~~v~~~v~--VD~~IPGCPP~p~~i~~~l~~l~-~~----i~   73 (84)
                      .++++||+|++||+|||+|+|| ++||+|+.++  +.+.|++++++  +|++||||||+|++|+++|++++ .+    ++
T Consensus        95 ~l~~l~e~~~~ak~VIAvGsCA-~~GGi~a~~~npt~~~gv~~vi~~~~di~IPGCPP~Pe~i~~~l~~ll~~G~~p~LD  173 (335)
T 3uqy_S           95 FIEKLKRAAAGASAIIAWGTCA-SWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD  173 (335)
T ss_dssp             HHHHHHHHHHHEEEEEEEHHHH-HTCHHHHSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHHHHTSCCCBC
T ss_pred             HHHHHHHHccCCCEEEEecccc-ccCCccCCCCCcccCcCHHHhCCCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCCCCC
Confidence            4899999999999999999999 9999998754  47789999998  79999999999999999999986 33    57


Q ss_pred             hccccccccc
Q psy4032          74 RMKILQSWYR   83 (84)
Q Consensus        74 ~~~~~~~~~~   83 (84)
                      +.+|++.||.
T Consensus       174 ~~~RP~~~y~  183 (335)
T 3uqy_S          174 RMGRPLMFYG  183 (335)
T ss_dssp             TTSCBHHHHS
T ss_pred             ccCCchhhhC
Confidence            7889988885

>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1

Probab=99.87  E-value=5.6e-24  Score=158.45  Aligned_cols=80  Identities=13%  Similarity=0.235  Sum_probs=69.8

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCccccc-----cc-ceeccCCCCCHHHHHHHHHHHHHH---
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGCDRII-----PV-DIYVPGCPPTAEALMYGILQLQKK---   71 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v~~~v-----~V-D~~IPGCPP~p~~i~~~l~~l~~~---   71 (84)
                      +++++|++|++||+|||+|||| ++||+|+.  +++...++++++     ++ |++||||||+||+|+++|++++..   
T Consensus       106 ~le~l~~~~~~ak~VIAvGtCA-~~GGI~a~~~n~t~~~gv~~vl~~~~~~~p~i~IPGCPP~Pe~i~~~L~~l~~~~~~  184 (283)
T 1cc1_S          106 MMELIRDLAPKSLATVAVGTCS-AYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLN  184 (283)
T ss_dssp             HHHHHHHHGGGSSEEEEESHHH-HHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCCEEEEEeecc-ccCCcCCCCCCCcccccHHHHhhcccCCCceEEeeCCCCCHHHHHHHHHHHhhhhhH
Confidence            5899999999999999999999 99999976  677889999987     77 899999999999999999996542   


Q ss_pred             --------Hhhccccccccc
Q psy4032          72 --------VKRMKILQSWYR   83 (84)
Q Consensus        72 --------i~~~~~~~~~~~   83 (84)
                              +++..|++.||.
T Consensus       185 ll~~~~p~Ld~~~RP~~~~~  204 (283)
T 1cc1_S          185 PTEHPLPELDDDGRPLLFFG  204 (283)
T ss_dssp             TTTSCCCCBCTTSCBHHHHS
T ss_pred             HHhCCCCCccccCCchhhcC
Confidence                    456677777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	84
d2fug61	161	e.19.1.2 (6:15-175) NAD-quinone oxidoreductase cha	2e-23
d1wuis1	267	e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small	9e-10
d1yq9a1	261	e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small	9e-09
d1frfs_	261	e.19.1.1 (S:) Nickel-iron hydrogenase, small subun	5e-08
d1cc1s_	278	e.19.1.1 (S:) Nickel-iron hydrogenase, small subun	1e-07

>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus thermophilus [TaxId: 274]} Length = 161

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nq06-like
domain: NAD-quinone oxidoreductase chain 6, Nqo6
species: Thermus thermophilus [TaxId: 274]

 Score = 85.4 bits (211), Expect = 2e-23
 Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 9   QAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQL 68
           + M  P  VISMG A  + GG ++ +Y++V+  D ++PVD+YVPGCPP  EAL+Y ++QL
Sbjct: 83  EQMPDPKWVISMG-ACASSGGMFN-NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQL 140

Query: 69  QKKVKRMKILQSWYR 83
           QKKV+     +   R
Sbjct: 141 QKKVRGQAYNERGER 155

>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit {Desulfovibrio vulgaris [TaxId: 881]} Length = 267

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio vulgaris [TaxId: 881]

 Score = 50.7 bits (121), Expect = 9e-10
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY-SYSVVRGCDRIIP----VDIYVPGCPPT 57
            + + ++ +     VI+ G  A  GG      + +  +G +  +       I + GCPP 
Sbjct: 94  MLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPN 153

Query: 58  AEALMYGILQLQKKVK 73
              L+  I+   K   
Sbjct: 154 PYNLVGTIVYYLKNKA 169

>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]} Length = 261

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio gigas [TaxId: 879]

 Score = 47.6 bits (113), Expect = 9e-09
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGGGYY-HYSYSVVRGCDRIIP----VDIYVPGCPPT 57
              + A+       VI++G  A  GG      + +   G +  +       I + GCPP 
Sbjct: 89  MYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPN 148

Query: 58  AEALMYGILQL 68
               +  ++ L
Sbjct: 149 PMNFVGTVVHL 159

>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfovibrio fructosovorans [TaxId: 878]} Length = 261

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio fructosovorans [TaxId: 878]

 Score = 45.7 bits (108), Expect = 5e-08
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 4   VSLLAQAMLGPVGVISMGGAAPNGGGYY-HYSYSVVRGCDRIIPVD-IYVPGCPPTAEAL 61
           +    +A     G+I +G  +P GG      + S  +G    + V  I +PGCPP     
Sbjct: 92  IETCKKAAAKAKGIICIGTCSPYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINF 151

Query: 62  MYGILQLQKKVKRMKILQSWYR 83
           +  ++ +    K +  L    R
Sbjct: 152 VGAVVHV--LTKGIPDLDENGR 171

>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfomicrobium baculatum [TaxId: 899]} Length = 278

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfomicrobium baculatum [TaxId: 899]

 Score = 45.0 bits (106), Expect = 1e-07
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 7/79 (8%)

Query: 3   GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY-------SYSVVRGCDRIIPVDIYVPGCP 55
            + L+       +  +++G  +  GG            S       ++I  + + VPGCP
Sbjct: 101 MMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCP 160

Query: 56  PTAEALMYGILQLQKKVKR 74
           P  + ++  ++     V  
Sbjct: 161 PHPDWMVGTLVAAWSHVLN 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d2fug61	161	NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus	99.96
d1wuis1	267	Nickel-iron hydrogenase, small subunit {Desulfovib	99.82
d1frfs_	261	Nickel-iron hydrogenase, small subunit {Desulfovib	99.81
d1cc1s_	278	Nickel-iron hydrogenase, small subunit {Desulfomic	99.8
d1yq9a1	261	Nickel-iron hydrogenase, small subunit {Desulfovib	99.79

>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nq06-like
domain: NAD-quinone oxidoreductase chain 6, Nqo6
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=8.1e-31  Score=181.15  Aligned_cols=76  Identities=43%  Similarity=0.803  Sum_probs=71.3

Q ss_pred             hHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCCccccCcccccccceeccCCCCCHHHHHHHHHHHHHHHhhccccc
Q psy4032           2 MGVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQ   79 (84)
Q Consensus         2 ~~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~~~~~~v~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i~~~~~~~   79 (84)
                      .+|+++|||||+||+|||+|+|| ++||+| ++|++.+++|+++|||+|||||||+||+|+++|+.|+++++++....
T Consensus        76 ~~l~~~y~qmPePK~VIA~GaCa-~sGG~f-~~y~v~~gvd~~iPVDvyIPGCPPrPeail~gl~~l~~ki~~~~~~~  151 (161)
T d2fug61          76 PVMRRVWEQMPDPKWVISMGACA-SSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNE  151 (161)
T ss_dssp             HHHHHHHHTSCSSCCEEEEHHHH-HSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHHSSCCCS
T ss_pred             HHHHHHHHhCCCCceEEEecccc-cCCCcc-CCccccCCcCccCcCceeCCCCCcCHHHHHHHHHHHHHHHhhhcchh
Confidence            57999999999999999999999 899999 58999999999999999999999999999999999999998866544

>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit {Desulfovibrio vulgaris [TaxId: 881]}

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.82  E-value=8.6e-22  Score=143.63  Aligned_cols=80  Identities=19%  Similarity=0.303  Sum_probs=65.4

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCc----ccccccceeccCCCCCHHHHHHHHHHHHHH-----
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGC----DRIIPVDIYVPGCPPTAEALMYGILQLQKK-----   71 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v----~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~-----   71 (84)
                      .++.++++++++|+|||+|||| ++|||++.  +++...++    +++++||++||||||||++|+++|.+++..     
T Consensus        94 ~~e~v~~~r~~ak~vVAvGtCA-~~GGI~a~~~~~t~~~~~~~~l~~~~~vdi~IpGCPp~p~~i~~~l~~~l~~~~~p~  172 (267)
T d1wuis1          94 MLDICSRILPKAQAVIAYGTCA-TFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLKNKAAPE  172 (267)
T ss_dssp             HHHHHHHHGGGSSEEEEESHHH-HHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHhhcCCEEEEeechh-ccCCccccCCCCcccccccccccccCCCeEEeCCCCCCHHHHHHHHHHHHhcCCCCc
Confidence            5789999999999999999999 99999975  34444444    566679999999999999999999998864     


Q ss_pred             Hhhccccccccc
Q psy4032          72 VKRMKILQSWYR   83 (84)
Q Consensus        72 i~~~~~~~~~~~   83 (84)
                      +++.+|+..||.
T Consensus       173 ld~~~RP~~~~~  184 (267)
T d1wuis1         173 LDSLNRPTMFFG  184 (267)
T ss_dssp             BCTTSCBHHHHS
T ss_pred             ccccCCCccccC
Confidence            345667776664

>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfovibrio fructosovorans [TaxId: 878]}

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio fructosovorans [TaxId: 878]

Probab=99.81  E-value=1.2e-21  Score=142.50  Aligned_cols=80  Identities=21%  Similarity=0.397  Sum_probs=69.4

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCcccccccc-eeccCCCCCHHHHHHHHHHHHHH----Hhhc
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGCDRIIPVD-IYVPGCPPTAEALMYGILQLQKK----VKRM   75 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v~~~v~VD-~~IPGCPP~p~~i~~~l~~l~~~----i~~~   75 (84)
                      .++.+++.++++|+|||+|||| ++|||++.  +++...++++++++| ++||||||+|++|+++|.+++.+    +++.
T Consensus        91 ~~e~~~~~~~~ak~vIAvGtCA-~~GGI~a~~~n~t~~~~v~~~i~~~vinIpGCPp~p~~i~~~l~~ll~g~~p~ld~~  169 (261)
T d1frfs_          91 MIETCKKAAAKAKGIICIGTCS-PYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDEN  169 (261)
T ss_dssp             HHHHHHHHHHHCSEEEEETTHH-HHCCSTTSTTCTTCEECHHHHHTSCCEEECSSSCCHHHHHHHHHHHHTTCSCCBCTT
T ss_pred             HHHHHHHhccCCCEEEEEeccc-ccCCccccCCCCccccChhhhcCCceEEecCCCCCHHHHHHHHHHHHhCCCcccccc
Confidence            4788999999999999999999 99999865  566788999999999 58999999999999999999874    4556


Q ss_pred             cccccccc
Q psy4032          76 KILQSWYR   83 (84)
Q Consensus        76 ~~~~~~~~   83 (84)
                      +|+..||.
T Consensus       170 ~RP~~~~~  177 (261)
T d1frfs_         170 GRPKLFYG  177 (261)
T ss_dssp             SCBHHHHS
T ss_pred             CCcccccC
Confidence            77777664

>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfomicrobium baculatum [TaxId: 899]}

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfomicrobium baculatum [TaxId: 899]

Probab=99.80  E-value=8.8e-21  Score=138.69  Aligned_cols=80  Identities=14%  Similarity=0.256  Sum_probs=65.1

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCCCC--ccccCc------ccccccceeccCCCCCHHHHHHHHHHHHHH---
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHYSY--SVVRGC------DRIIPVDIYVPGCPPTAEALMYGILQLQKK---   71 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~~~--~~~~~v------~~~v~VD~~IPGCPP~p~~i~~~l~~l~~~---   71 (84)
                      .++.+.+.++++|+|||+|||| ++|||++...  +...++      ++++++|++||||||||++|+++|.+++..   
T Consensus       101 ~~e~~~~l~~kak~vVAvGtCA-~~GGI~a~~~n~t~~~~~~~~~~~~~~~~~~i~IpGCPp~pd~i~~tl~~~l~~~~~  179 (278)
T d1cc1s_         101 MMELIRDLAPKSLATVAVGTCS-AYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLN  179 (278)
T ss_dssp             HHHHHHHHGGGSSEEEEESHHH-HHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCCEEEEEeccc-ccCCcccccCCCccchhhheecCcCCcCCcccccCCCCCCHHHHHHHHHHHHHhhhc
Confidence            4789999999999999999999 9999987543  333333      457789999999999999999999999865   


Q ss_pred             --------Hhhccccccccc
Q psy4032          72 --------VKRMKILQSWYR   83 (84)
Q Consensus        72 --------i~~~~~~~~~~~   83 (84)
                              +++.+|+..+|.
T Consensus       180 ~~~~~lp~lD~~gRP~~~~~  199 (278)
T d1cc1s_         180 PTEHPLPELDDDGRPLLFFG  199 (278)
T ss_dssp             TTTSCCCCBCTTSCBHHHHS
T ss_pred             cccccchhhHhcCCccccCC
Confidence                    345667766664

>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio gigas [TaxId: 879]

Probab=99.79  E-value=7.6e-21  Score=138.19  Aligned_cols=80  Identities=19%  Similarity=0.275  Sum_probs=65.3

Q ss_pred             HHHHHHHHhcCCCEEEEeccCCCCCCCCCCC--CCccccCcc----cccccceeccCCCCCHHHHHHHHHHHHHHH----
Q psy4032           3 GVSLLAQAMLGPVGVISMGGAAPNGGGYYHY--SYSVVRGCD----RIIPVDIYVPGCPPTAEALMYGILQLQKKV----   72 (84)
Q Consensus         3 ~l~~~~e~~~~~k~vIA~G~CAv~~GGi~~~--~~~~~~~v~----~~v~VD~~IPGCPP~p~~i~~~l~~l~~~i----   72 (84)
                      .++.+.+.++++|+|||+|||| ++|||++.  +++...+++    +.+++|++||||||||++|+++|.+++.+-    
T Consensus        89 ~~e~v~~lr~~ak~vVAvGtCA-~~GGI~a~~~~~t~~~~~~~~~~~~~~~~i~IpGCPp~p~~i~~~l~~ll~g~~p~l  167 (261)
T d1yq9a1          89 MYDICAEVAPKAKAVIAIGTCA-TYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLTKGMPEL  167 (261)
T ss_dssp             HHHHHHHHGGGSSEEEEEHHHH-HHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHTCSCCB
T ss_pred             HHHHHHHHhhcCCEEEEecchh-hcCCccccCCCccCcccccccccccCCCeEEeCCCCCCHHHHHHHHHHHHhCCCccc
Confidence            4788999999999999999999 99999865  444555554    455689999999999999999999999753    


Q ss_pred             hhccccccccc
Q psy4032          73 KRMKILQSWYR   83 (84)
Q Consensus        73 ~~~~~~~~~~~   83 (84)
                      ++..|+..||.
T Consensus       168 d~~~RP~~~~~  178 (261)
T d1yq9a1         168 DKQGRPVMFFG  178 (261)
T ss_dssp             CTTSCBHHHHS
T ss_pred             ccccCcccccC
Confidence            45667777764