Psyllid ID: psy4036

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MSLPPPVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKNHVAIFIIHQDLQVFMKSL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mslpppvsvspliKFARWTMLSAGILYGvsrqsslekKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKNHVAIFIIHQDLQVFMKSL
Flexible Loop (DISEMBL)
mslpppvsvSPLIKFARWTMLSAGILYGvsrqsslekkeeKLRVIRAQKkaikdaklaeekkranevsrislkknhvaiFIIHQDLQVFMKSL
Low Complexity Region (SEG)
MslpppvsvsplIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKNHVAIFIIHQDLQVFMKSL
Disordered region (IsUnstruct)
*********SPLIKFARWTMLSAGILYGV****************************************ISLKKNHVAIFIIHQDLQVF****
Disordered Region (DISOPRED)
****PPV*VSPLIKFARWTMLSAGILYGVSRQSSLE***********************************LKKNHVAIFIIHQDLQVFMKSL
Disordered Region (DISEMBL)
********VSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAI**************VSRISLKKNHVAIFIIHQDLQVFMKSL
Disordered Region (DISPRO)
**LPPPVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKNHVAIFIIHQDLQVFMKSL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLPPPVSVSPLIKFARWTMLSAGILYGVSRQSSxxxxxxxxxxxxxxxxxxxxxKLAEEKKRANEVSRISLKKNHVAIFIIHQDLQVFMKSL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
21358593	81	CG3321, isoform A [Drosophila melanogast	0.634	0.728	0.694	6e-15
195329022	81	GM24162 [Drosophila sechellia] gi|195501	0.634	0.728	0.677	2e-14
195570927	81	GD18958 [Drosophila simulans] gi|1941993	0.634	0.728	0.661	4e-14
194900749	81	GG16851 [Drosophila erecta] gi|190651621	0.634	0.728	0.677	4e-14
195446058	79	GK10942 [Drosophila willistoni] gi|19416	0.666	0.784	0.629	5e-14
125775485	81	GA17372 [Drosophila pseudoobscura pseudo	0.634	0.728	0.661	5e-14
195391580	80	GJ22808 [Drosophila virilis] gi|19415252	0.634	0.737	0.661	8e-14
194740844	81	GF17508 [Drosophila ananassae] gi|190625	0.634	0.728	0.661	8e-14
195561375	72	GD14258 [Drosophila simulans] gi|1942025	0.634	0.819	0.644	2e-13
224924392	81	mitochondrial F1F0-ATP synthase, subunit	0.634	0.728	0.644	3e-13

>gi|21358593|ref|NP_650356.1| CG3321, isoform A [Drosophila melanogaster] gi|24646815|ref|NP_731903.1| CG3321, isoform B [Drosophila melanogaster] gi|320542802|ref|NP_001189221.1| CG3321, isoform C [Drosophila melanogaster] gi|3643815|gb|AAC42662.1| 9 kD basic protein [Drosophila melanogaster] gi|7299873|gb|AAF55049.1| CG3321, isoform B [Drosophila melanogaster] gi|10726524|gb|AAG22153.1| CG3321, isoform A [Drosophila melanogaster] gi|16767972|gb|AAL28204.1| GH08548p [Drosophila melanogaster] gi|220947632|gb|ACL86359.1| CG3321-PA [synthetic construct] gi|220956994|gb|ACL91040.1| CG3321-PA [synthetic construct] gi|318068774|gb|ADV37312.1| CG3321, isoform C [Drosophila melanogaster]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 48/59 (81%)

Query: 6  PVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRA 64
          PV VSPLIKF RW++L  GI YG + QS L KKEEKLR I AQ+KA++DAKLAEEKKR+
Sbjct: 5  PVRVSPLIKFGRWSLLLVGIAYGAAHQSRLSKKEEKLREIEAQQKAVRDAKLAEEKKRS 63

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195329022|ref|XP_002031210.1| GM24162 [Drosophila sechellia] gi|195501630|ref|XP_002097875.1| GE24232 [Drosophila yakuba] gi|38048575|gb|AAR10190.1| similar to Drosophila melanogaster CG3321, partial [Drosophila yakuba] gi|194120153|gb|EDW42196.1| GM24162 [Drosophila sechellia] gi|194183976|gb|EDW97587.1| GE24232 [Drosophila yakuba]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 48/59 (81%)

Query: 6  PVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRA 64
          PV VSPLIKF RW++L  GI YG + QS L KKEEK+R I AQ+KA++DAKLAEEKKR+
Sbjct: 5  PVRVSPLIKFGRWSLLLVGIAYGAAHQSRLSKKEEKVREIEAQQKAVRDAKLAEEKKRS 63

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195570927|ref|XP_002103455.1| GD18958 [Drosophila simulans] gi|194199382|gb|EDX12958.1| GD18958 [Drosophila simulans]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 47/59 (79%)

Query: 6  PVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRA 64
          PV VSPLIKF RW++L  GI YG + QS L KKEEK+R I  Q+KA++DAKLAEEKKR+
Sbjct: 5  PVRVSPLIKFGRWSLLLVGIAYGAAHQSRLSKKEEKVREIEGQQKAVRDAKLAEEKKRS 63

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194900749|ref|XP_001979918.1| GG16851 [Drosophila erecta] gi|190651621|gb|EDV48876.1| GG16851 [Drosophila erecta]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 47/59 (79%)

Query: 6  PVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRA 64
          PV VSPLIKF RW++L  GI YG + QS L KKEEK+R I AQ+K I+DAKLAEEKKR+
Sbjct: 5  PVRVSPLIKFGRWSLLLVGIAYGAAHQSRLSKKEEKVREIEAQQKVIRDAKLAEEKKRS 63

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195446058|ref|XP_002070608.1| GK10942 [Drosophila willistoni] gi|194166693|gb|EDW81594.1| GK10942 [Drosophila willistoni]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 48/62 (77%)

Query: 6  PVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRAN 65
          PV VSPLIKF RW++L  GI YG + QS L KKEEK+R I AQ+K ++DAKLAEEKKR+ 
Sbjct: 5  PVRVSPLIKFGRWSLLLVGIAYGAAHQSRLSKKEEKVREIEAQQKVVRDAKLAEEKKRSA 64

Query: 66 EV 67
          + 
Sbjct: 65 DA 66

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125775485|ref|XP_001358959.1| GA17372 [Drosophila pseudoobscura pseudoobscura] gi|195144508|ref|XP_002013238.1| GL23504 [Drosophila persimilis] gi|54638700|gb|EAL28102.1| GA17372 [Drosophila pseudoobscura pseudoobscura] gi|194102181|gb|EDW24224.1| GL23504 [Drosophila persimilis]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 46/59 (77%)

Query: 5  PPVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKR 63
          PPV VSPLIK  RW++L  GI YG + QS L KKEEK+R I AQ+K ++DAKLAEEKKR
Sbjct: 4  PPVRVSPLIKLGRWSLLLVGIAYGAAHQSRLSKKEEKVREIEAQQKVVRDAKLAEEKKR 62

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195391580|ref|XP_002054438.1| GJ22808 [Drosophila virilis] gi|194152524|gb|EDW67958.1| GJ22808 [Drosophila virilis]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 47/59 (79%)

Query: 6  PVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRA 64
          PV VSPLIK  RW++L  GI YG + QS L KKEEK+R I AQ+KA++DAKLAEEKKR+
Sbjct: 5  PVRVSPLIKLGRWSLLIVGIAYGAAHQSRLSKKEEKVREIEAQQKAVRDAKLAEEKKRS 63

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194740844|ref|XP_001952900.1| GF17508 [Drosophila ananassae] gi|190625959|gb|EDV41483.1| GF17508 [Drosophila ananassae]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 47/59 (79%)

Query: 6  PVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRA 64
          PV VSPLIKF RW++L  GI YG + QS L KKEEK+R I AQ+K ++DAKLAEEKKR+
Sbjct: 5  PVRVSPLIKFGRWSLLLVGIAYGAAHQSRLSKKEEKVREIEAQQKIVRDAKLAEEKKRS 63

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195561375|ref|XP_002077468.1| GD14258 [Drosophila simulans] gi|194202582|gb|EDX16158.1| GD14258 [Drosophila simulans]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 46/59 (77%)

Query: 6  PVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRA 64
          PV VSPLIKF RW++L  GI YG + QS L KKEEK+R I  Q+KA++DAKLAE KKR+
Sbjct: 5  PVRVSPLIKFGRWSLLLVGIAYGAAHQSRLSKKEEKVREIEGQQKAVRDAKLAEAKKRS 63

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224924392|gb|ACN69146.1| mitochondrial F1F0-ATP synthase, subunit e [Stomoxys calcitrans]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 6  PVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRA 64
          PV VSPLIKF RW++L+ GI YG   Q+ L KKEEK+R I AQ+K ++DAKLAEEKKR+
Sbjct: 5  PVRVSPLIKFGRWSLLTLGIGYGAFHQNRLAKKEEKVREIEAQQKVVRDAKLAEEKKRS 63

Source: Stomoxys calcitrans

Species: Stomoxys calcitrans

Genus: Stomoxys

Family: Muscidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
FB|FBgn0038224	81	CG3321 [Drosophila melanogaste	0.645	0.740	0.616	2.3e-14
ZFIN|ZDB-GENE-051130-1	71	atp5ib "ATP synthase, H+ trans	0.580	0.760	0.357	0.00027
RGD|621377	71	Atp5i "ATP synthase, H+ transp	0.602	0.788	0.379	0.00057

FB|FBgn0038224 CG3321 [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 37/60 (61%), Positives = 45/60 (75%)

Query:    13 IKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISL 72
             IKF RW++L  GI YG + QS L KKEEKLR I AQ+KA++DAKLAEEKKR+ E    +L
Sbjct:    12 IKFGRWSLLLVGIAYGAAHQSRLSKKEEKLREIEAQQKAVRDAKLAEEKKRSAEAEARAL 71

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015992 "proton transport" evidence=ISS

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

ZFIN|ZDB-GENE-051130-1 atp5ib "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit e, duplicate b" [Danio rerio (taxid:7955)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query:    13 IKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDA--KLAEEKKRANE 66
             IK ARW+ L  GI+YG  R  +L+   E+ R I  ++K +++   ++A++   ANE
Sbjct:    11 IKTARWSALLVGIIYGKRRYDNLKPIAEEERRIEEEEKKVREEQERIAKQLAEANE 66

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IDA

RGD|621377 Atp5i "ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E" [Rattus norvegicus (taxid:10116)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query:    13 IKFARWTMLSAGILYGVSRQSSLEKK-EEKLRVIRAQKKAIKDAKLAE-EKKRANEVS 68
             IKF R++ L  G+ YG  R S L+ + EE+ R+   +KK + + K  E E   A +VS
Sbjct:    11 IKFGRYSALILGMAYGAKRYSYLKPRAEEERRIAAEEKKRLDELKRIERELAEAEDVS 68


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.343    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        82   0.00091  102 3  10 22  0.36    29
                                                     29  0.43    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  529 (56 KB)
  Total size of DFA:  113 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  18.87u 0.09s 18.96t   Elapsed:  00:00:18
  Total cpu time:  18.87u 0.09s 18.96t   Elapsed:  00:00:20
  Start:  Thu Aug 15 14:39:46 2013   End:  Thu Aug 15 14:40:06 2013

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;IDA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA;ISO

GO:0046034 "ATP metabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	93
pfam05680	83	pfam05680, ATP-synt_E, ATP synthase E chain	4e-18

>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain

 Score = 71.4 bits (175), Expect = 4e-18
 Identities = 36/79 (45%), Positives = 48/79 (60%)

Query: 4  PPPVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKR 63
           PPV+VSPLI   R++ L AG++YG   Q SL+KKEEK+R   AQ+K I+ AK A  KK+
Sbjct: 1  MPPVAVSPLINVLRYSALVAGVVYGAKHQRSLKKKEEKIREYEAQEKLIEKAKAAYAKKK 60

Query: 64 ANEVSRISLKKNHVAIFII 82
            +    SL +   A F  
Sbjct: 61 QAKQEAKSLAEGSSAPFDE 79

This family consists of several ATP synthase E chain sequences which are components of the CF(0) subunit. Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
PF05680	86	ATP-synt_E: ATP synthase E chain; InterPro: IPR008	99.96
KOG4326|consensus	81		99.95
PRK11677	134	hypothetical protein; Provisional	83.08

>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.96  E-value=5.6e-30  Score=172.01  Aligned_cols=71  Identities=42%  Similarity=0.581  Sum_probs=66.6

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHhhhhhch---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhh
Q psy4036           5 PPVSVSPLIKFARWTMLSAGILYGVSRQSSLE---KKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKN   75 (93)
Q Consensus         5 ppv~VSplInv~RySAL~lGV~YG~~h~~~Lk---~~a~~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~~~   75 (93)
                      |||+|||+|||+|||||++||+||++|+++|+   +++++++++++++++|+|||++|+|++++.++...+..+
T Consensus         2 ~p~~VSp~inv~RySaL~~Gv~YG~~~~~~L~~~~~~~~~~~e~~~~eklie~AK~a~ak~~~~~~~~~~~~~~   75 (86)
T PF05680_consen    2 PPVQVSPLINVLRYSALGLGVVYGAYHQRYLKAKAKKEAAEREYEAKEKLIEQAKAAYAKKHAPKQEASSLASD   75 (86)
T ss_pred             CCcccCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcc
Confidence            79999999999999999999999999999999   777789999999999999999999999999987777654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

>KOG4326|consensus

Probab=99.95  E-value=2.3e-27  Score=158.48  Aligned_cols=74  Identities=46%  Similarity=0.664  Sum_probs=71.9

Q ss_pred             CCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhhh
Q psy4036           1 MSLPPPVSVSPLIKFARWTMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKKRANEVSRISLKKN   75 (93)
Q Consensus         1 m~~~ppv~VSplInv~RySAL~lGV~YG~~h~~~Lk~~a~~~re~e~keKli~eAK~e~aKk~~~~~e~~~l~~~   75 (93)
                      |+ ||||+|||||+|+|||+|++||+||++|+++|++.+++.|+++++||.+++|+.+.+|+.-+++|+++|++.
T Consensus         1 m~-p~pV~vSPLIkfGRysaL~lGvaYGa~r~~~l~~~~e~~Rei~a~eKav~da~~a~ekKr~a~~eaR~Lae~   74 (81)
T KOG4326|consen    1 MQ-PPPVTVSPLIKFGRYSALSLGVAYGAFRLRQLREYHEDIREIDAHEKAVADAEEAAEKKRWAKDEARYLAEV   74 (81)
T ss_pred             CC-CCCeeecHHHHhhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHh
Confidence            67 899999999999999999999999999999999999999999999999999999999999999999999975

>PRK11677 hypothetical protein; Provisional

Probab=83.08  E-value=5  Score=29.04  Aligned_cols=44  Identities=14%  Similarity=0.096  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4036          19 TMLSAGILYGVSRQSSLEKKEEKLRVIRAQKKAIKDAKLAEEKK   62 (93)
Q Consensus        19 SAL~lGV~YG~~h~~~Lk~~a~~~re~e~keKli~eAK~e~aKk   62 (93)
                      .+|++|++-|+.--+++.+.-.++++.+.+....+++-.+|..+
T Consensus         8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~Ykqe   51 (134)
T PRK11677          8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQE   51 (134)
T ss_pred             HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999988876555555555555545444445443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00