Psyllid ID: psy4050

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
MKRLCPEISFFQQAAEYPCKAVVTSGGRKRLHRRVTHSTLSSANVQRRGLGVTKQAAEYPCKAVVTSGGRKRLHRRVTHSTLSSANVQRRGLGVTKIALVVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGRELLG
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHcccc
ccccccccHHccccccccccccccccccccccccccHHHccccccccccccccccccccccEEEEcccccccccccccccHHHHHcHHHcccccccccHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccccccccccccccHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHcHHHHHHHHHHHHHcccccc
mkrlcpeisffqqaaeypckavvtsggrkrlhrrvthstlssanvqrrglgvtkqaaeypckavvtsggrkrlhrrvthstlssanvqrrglgVTKIALVVRKAaedyapleegrEAHWEVVERLLFLYAKmnpgqgyvqgmnEIIGpiyytfatdpvlenrvrkaaedyapleegrEAHWEVVERLLFLYAKmnpgqgyvqgmnEIIGpiyytfatdpvldnrehaeaDCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLlsqefplpdvLRIWDSLFADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLqhypssvdipTVISKAVELAGrekvhhislypkKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLqhypssvdipTVISKAVELAGRELLG
MKRLCPEISffqqaaeypckavvtsggrkrlhrrvthstlssanvqrrglgvtkqaaeypckavvtsggrkrlhrrvthstlssanvqrrglgvTKIALVVRKAAEdyapleegreaHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLENRVRKAAEdyapleegreaHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHypssvdiptVISKAVELAGRELLG
MKRLCPEISFFQQAAEYPCKAVVTSGGRKRLHRRVTHSTLSSANVQRRGLGVTKQAAEYPCKAVVTSGGRKRLHRRVTHSTLSSANVQRRGLGVTKIALVVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGRELLG
****CPEISFFQQAAEYPCKAVVTSGGRKRL*****************GLGVTKQAAEYPCKAVVTSGGRKRLHRRVTHSTLSSANVQRRGLGVTKIALVVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVEL*******
*KRLCPEISF***********************************************************************************VTKIALVVRKAAEDYAPLEEGREAHWEVVERLLFLYAK*********GMNEIIGPIYYTFATDPVLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMGEIRDFFIKSLDE***GINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCALSL*********************FSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREL**
MKRLCPEISFFQQAAEYPCKAVVTSGGRKRLHRRVTHSTLSSANVQRRGLGVTKQAAEYPCKAVVTSGGRKRLHRRVTHSTLSSANVQRRGLGVTKIALVVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGRELLG
**RLCPEISFFQQAAEYPCKAVV*********************************AEYPCKAVVTSGGR**L****THSTLS*****RRGLGVTKIALVVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCAL*********************LRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAG*****
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MKRLCPEISFFQQAAEYPCKAVVTSGGRKRLHRRVTHSTLSSANVQRRGLGVTKQAAEYPCKAVVTSGGRKRLHRRVTHSTLSSANVQRRGLGVTKIALVVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMGEIRDFFIKSxxxxxxxxxxxxxxxxxxxxxKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGRELLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query472 2.2.26 [Sep-21-2011]
Q9NVG8400 TBC1 domain family member yes N/A 0.444 0.525 0.597 7e-70
Q8R3D1400 TBC1 domain family member yes N/A 0.444 0.525 0.597 4e-69
Q9URY3619 TBC domain-containing pro yes N/A 0.400 0.305 0.473 5e-52
Q80XQ2 815 TBC1 domain family member no N/A 0.470 0.272 0.285 9e-25
Q92609 795 TBC1 domain family member no N/A 0.474 0.281 0.279 2e-23
Q54VM3 1173 TBC1 domain family member no N/A 0.497 0.200 0.244 9e-18
Q95LL3505 TBC1 domain family member N/A N/A 0.362 0.338 0.284 4e-17
Q9NU19505 TBC1 domain family member no N/A 0.362 0.338 0.284 4e-17
O59737514 GTPase-activating protein no N/A 0.383 0.352 0.278 3e-15
Q95KI1497 TBC1 domain family member N/A N/A 0.391 0.372 0.267 9e-15
>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3 Back     alignment and function desciption
 Score =  265 bits (676), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 126/211 (59%), Positives = 161/211 (76%), Gaps = 1/211 (0%)

Query: 160 ENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDP 219
           +N V  +  +Y  L  G EAHWEVVER+LF+YAK+NPG  YVQGMNEI+GP+YYTFATDP
Sbjct: 187 KNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDP 246

Query: 220 VLDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKL 279
             + +EHAEAD FF FTNLM EIRD FIKSLD+++ GI   M K+  T+K KD+E++ KL
Sbjct: 247 NSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKL 306

Query: 280 YAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDI 339
               + PQ+++FRWLTLLLSQEF LPDV+RIWDSLFAD+ RF FL  +CCAM++L+RE +
Sbjct: 307 QEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLMLIREQL 366

Query: 340 LAGDFPSIVKLLQHYPSSVDIPTVISKAVEL 370
           L GDF   ++LLQ YP + D+  ++ KA EL
Sbjct: 367 LEGDFTVNMRLLQDYPIT-DVCQILQKAKEL 396
May act as a GTPase-activating protein for Rab family protein(s).
Homo sapiens (taxid: 9606)
>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1 Back     alignment and function description
>sp|Q9URY3|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4 SV=4 Back     alignment and function description
>sp|Q80XQ2|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2 Back     alignment and function description
>sp|Q92609|TBCD5_HUMAN TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1 Back     alignment and function description
>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1 Back     alignment and function description
>sp|Q95LL3|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B PE=2 SV=1 Back     alignment and function description
>sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3 Back     alignment and function description
>sp|O59737|GYP1_SCHPO GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp1 PE=3 SV=1 Back     alignment and function description
>sp|Q95KI1|TB22A_MACFA TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis GN=TBC1D22A PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query472
307195461411 TBC1 domain family member 13 [Harpegnath 0.444 0.510 0.744 1e-86
383855392408 PREDICTED: TBC1 domain family member 13- 0.444 0.514 0.744 2e-86
328785576403 PREDICTED: TBC1 domain family member 13- 0.444 0.521 0.739 2e-86
340721185396 PREDICTED: TBC1 domain family member 13- 0.444 0.530 0.739 5e-86
380027716403 PREDICTED: TBC1 domain family member 13- 0.444 0.521 0.734 6e-86
242003804395 conserved hypothetical protein [Pediculu 0.582 0.696 0.470 7e-85
322787273395 hypothetical protein SINV_05799 [Solenop 0.444 0.531 0.720 9e-85
307182933395 TBC1 domain family member 13 [Camponotus 0.444 0.531 0.725 2e-84
332029134425 TBC1 domain family member 13 [Acromyrmex 0.444 0.494 0.720 4e-84
189235975389 PREDICTED: similar to CG5978 CG5978-PA [ 0.572 0.694 0.464 9e-84
>gi|307195461|gb|EFN77347.1| TBC1 domain family member 13 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/211 (74%), Positives = 177/211 (83%), Gaps = 1/211 (0%)

Query: 163 VRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLD 222
           VRKA EDYAPL EG EAHWEV+ER+LFLYAK+NPGQGYVQGMNEI+GPIY+ FA DP   
Sbjct: 200 VRKATEDYAPLAEGGEAHWEVLERILFLYAKLNPGQGYVQGMNEIVGPIYHAFACDPDQA 259

Query: 223 NREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAI 282
            REHAEAD FF FTNLMGEIRDFFIK+LDE E GIN +MSKL   +K  D EVW +L+  
Sbjct: 260 WREHAEADTFFCFTNLMGEIRDFFIKTLDEAEFGINSMMSKLTNQVKTNDPEVWMRLHQQ 319

Query: 283 ELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAG 342
           EL PQYYSFRWLTLLLSQEFPLPDV+RIWDSLFADE RFSFL HICCAMILL+R+ +LAG
Sbjct: 320 ELCPQYYSFRWLTLLLSQEFPLPDVMRIWDSLFADEDRFSFLIHICCAMILLLRDQLLAG 379

Query: 343 DFPSIVKLLQHYPSSVDIPTVISKAVELAGR 373
           DF + VKLLQ++P S+DI  V+SKA  LAG+
Sbjct: 380 DFATNVKLLQNFP-SMDIQIVLSKAAALAGK 409

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383855392|ref|XP_003703197.1| PREDICTED: TBC1 domain family member 13-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328785576|ref|XP_392146.3| PREDICTED: TBC1 domain family member 13-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|340721185|ref|XP_003399005.1| PREDICTED: TBC1 domain family member 13-like [Bombus terrestris] gi|350404791|ref|XP_003487221.1| PREDICTED: TBC1 domain family member 13-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380027716|ref|XP_003697565.1| PREDICTED: TBC1 domain family member 13-like [Apis florea] Back     alignment and taxonomy information
>gi|242003804|ref|XP_002422867.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505749|gb|EEB10129.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|322787273|gb|EFZ13409.1| hypothetical protein SINV_05799 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307182933|gb|EFN69943.1| TBC1 domain family member 13 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332029134|gb|EGI69145.1| TBC1 domain family member 13 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|189235975|ref|XP_970508.2| PREDICTED: similar to CG5978 CG5978-PA [Tribolium castaneum] gi|270004611|gb|EFA01059.1| hypothetical protein TcasGA2_TC003977 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query472
FB|FBgn0035916403 GAPsec "GTPase activating prot 0.438 0.513 0.673 2.1e-90
RGD|1591937400 Tbc1d13 "TBC1 domain family, m 0.444 0.525 0.601 6.6e-77
UNIPROTKB|Q9NVG8400 TBC1D13 "TBC1 domain family me 0.444 0.525 0.597 1.8e-76
UNIPROTKB|F1MXD4399 TBC1D13 "Uncharacterized prote 0.425 0.503 0.623 2.2e-76
UNIPROTKB|F1RR65400 TBC1D13 "Uncharacterized prote 0.444 0.525 0.592 2.9e-76
MGI|MGI:2385326400 Tbc1d13 "TBC1 domain family, m 0.444 0.525 0.597 2.9e-76
UNIPROTKB|E2RQB4400 TBC1D13 "Uncharacterized prote 0.444 0.525 0.587 3.6e-76
UNIPROTKB|J9NWF3403 TBC1D13 "Uncharacterized prote 0.444 0.521 0.587 3.6e-76
UNIPROTKB|E1BXI8399 TBC1D13 "Uncharacterized prote 0.425 0.503 0.613 2.5e-73
ZFIN|ZDB-GENE-080204-86414 tbc1d13 "TBC1 domain family, m 0.404 0.461 0.612 3.7e-70
FB|FBgn0035916 GAPsec "GTPase activating protein, SECIS-dependent read-through" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 745 (267.3 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
 Identities = 140/208 (67%), Positives = 169/208 (81%)

Query:   164 RKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDN 223
             +++ E+YA +EEG+EAHWEVV+R+LF+YAK+NPGQGYVQGMNEI+GPIYY  A+DP L  
Sbjct:   197 KRSVENYAAMEEGQEAHWEVVQRILFIYAKLNPGQGYVQGMNEIVGPIYYVMASDPDLTY 256

Query:   224 REHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIE 283
             R HAEADCFF FT LM EIRDFFIK+LD+ E GI  +M++L+  +K KDL ++E L + E
Sbjct:   257 RAHAEADCFFCFTALMSEIRDFFIKTLDDAEGGIKFMMARLSNMLKSKDLSIYELLRSQE 316

Query:   284 LHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAGD 343
             LHPQYYSFRWLTLLLSQEFPLPDVLRIWDS+FADE RF FL  ICC+MIL+ +E IL  D
Sbjct:   317 LHPQYYSFRWLTLLLSQEFPLPDVLRIWDSVFADEQRFDFLIKICCSMILIQKEAILEND 376

Query:   344 FPSIVKLLQHYPSSVDIPTVISKAVELA 371
             F S VKLLQ+YP  +DI  VI+ A  LA
Sbjct:   377 FASNVKLLQNYPP-IDINVVIAHAGSLA 403
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0001514 "selenocysteine incorporation" evidence=IDA
GO:0006451 "translational readthrough" evidence=IDA
RGD|1591937 Tbc1d13 "TBC1 domain family, member 13" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NVG8 TBC1D13 "TBC1 domain family member 13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXD4 TBC1D13 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR65 TBC1D13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2385326 Tbc1d13 "TBC1 domain family, member 13" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQB4 TBC1D13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NWF3 TBC1D13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXI8 TBC1D13 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-86 tbc1d13 "TBC1 domain family, member 13" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8R3D1TBC13_MOUSENo assigned EC number0.59710.44490.525yesN/A
Q9NVG8TBC13_HUMANNo assigned EC number0.59710.44490.525yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 2e-30
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 1e-28
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 5e-23
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 2e-06
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 0.001
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  117 bits (295), Expect = 2e-30
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 182 EVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMGE 241
           E + R+L  YA  NP  GY QGMN +  P+                E D F+    LM  
Sbjct: 73  ESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVM----------EDEEDAFWCLVKLMER 122

Query: 242 IRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQE 301
               F        SG+   + +L++ +K+ D ++++ L  + + P  Y+ RW   L ++E
Sbjct: 123 YGPNFYL---PDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPSLYALRWFLTLFARE 179

Query: 302 FPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDIL 340
            PL  VLRIWD LFA+     FL  +  A++ L R+ +L
Sbjct: 180 LPLEIVLRIWDVLFAE--GSDFLFRVALALLKLHRDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 472
KOG4567|consensus370 100.0
KOG1092|consensus484 100.0
KOG2058|consensus436 99.97
KOG1091|consensus 625 99.96
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 99.96
COG5210496 GTPase-activating protein [General function predic 99.95
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.94
KOG2223|consensus586 99.92
KOG1093|consensus725 99.9
KOG2222|consensus 848 99.89
KOG3636|consensus 669 99.87
KOG2224|consensus781 99.86
KOG2197|consensus488 99.82
KOG4436|consensus948 99.81
KOG2595|consensus395 99.81
KOG4347|consensus 671 99.81
KOG1102|consensus397 99.74
KOG4567|consensus370 99.65
KOG1092|consensus484 99.39
KOG2221|consensus267 99.28
KOG1091|consensus 625 99.04
KOG4436|consensus 948 98.98
KOG2224|consensus781 98.4
KOG2801|consensus 559 98.34
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 96.56
COG5210496 GTPase-activating protein [General function predic 95.64
KOG1093|consensus 725 95.5
PF149611296 BROMI: Broad-minded protein 95.12
KOG1648|consensus813 95.05
KOG2197|consensus488 94.72
KOG2058|consensus436 90.75
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 90.32
>KOG4567|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-56  Score=428.33  Aligned_cols=189  Identities=60%  Similarity=1.078  Sum_probs=186.0

Q ss_pred             HHHHHHHHHhCCCCCccCChhHHHHHHHHhhcCCCcccccccchhhHHHHHHHHHHHhHhhhhhccccchHHHHHHHHHH
Q psy4050         185 ERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKL  264 (472)
Q Consensus       185 ~rIL~~ys~~~P~igY~QGM~~I~a~Ll~~~~~d~~~~~~~~~E~daF~~f~~Lm~~~~~~~~~~ld~~~~gi~~~~~~l  264 (472)
                      +|||++||+.|||||||||||+|+||++|+++.||+.++..++|+|||+||+.||.+++|+|++.+|++..||...|..+
T Consensus       175 erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~  254 (370)
T KOG4567|consen  175 ERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRL  254 (370)
T ss_pred             HHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhChHHHHHHHhhccCCccccHHHHHHHhccCCChHHHHHHHHHHhcCcCchhHHHHHHHHHHHHhhhhcCCCCh
Q psy4050         265 NQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVREDILAGDF  344 (472)
Q Consensus       265 ~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tLFs~~fp~~~vlriWD~l~~~g~~~~~l~~i~lA~L~~~r~~Ll~~d~  344 (472)
                      .++|+++|-+||.||+..++.|++|++||+++|++++||+++|+||||.+|++..+++++.++|+|||+..|+.|+++||
T Consensus       255 ~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF  334 (370)
T KOG4567|consen  255 SELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDF  334 (370)
T ss_pred             HHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCCCCHHHHHHHHHHhhccc
Q psy4050         345 PSIVKLLQHYPSSVDIPTVISKAVELAGRE  374 (472)
Q Consensus       345 ~~il~~L~~~p~~~Dv~~ll~~A~~l~~~~  374 (472)
                      +..|++||++| ..|+..++..|.+++++.
T Consensus       335 ~~nmkLLQ~yp-~tdi~~~l~~A~~Lr~~k  363 (370)
T KOG4567|consen  335 TVNMKLLQNYP-TTDISKMLAVADSLRDKK  363 (370)
T ss_pred             HHHHHHHhcCC-CCCHHHHHHHHHHHHhcc
Confidence            99999999999 999999999999999763

>KOG1092|consensus Back     alignment and domain information
>KOG2058|consensus Back     alignment and domain information
>KOG1091|consensus Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2223|consensus Back     alignment and domain information
>KOG1093|consensus Back     alignment and domain information
>KOG2222|consensus Back     alignment and domain information
>KOG3636|consensus Back     alignment and domain information
>KOG2224|consensus Back     alignment and domain information
>KOG2197|consensus Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>KOG2595|consensus Back     alignment and domain information
>KOG4347|consensus Back     alignment and domain information
>KOG1102|consensus Back     alignment and domain information
>KOG4567|consensus Back     alignment and domain information
>KOG1092|consensus Back     alignment and domain information
>KOG2221|consensus Back     alignment and domain information
>KOG1091|consensus Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>KOG2224|consensus Back     alignment and domain information
>KOG2801|consensus Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1093|consensus Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG1648|consensus Back     alignment and domain information
>KOG2197|consensus Back     alignment and domain information
>KOG2058|consensus Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 6e-18
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 1e-15
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 4e-14
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 4e-13
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 5e-04
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure 
Iteration: 1

 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 103/190 (54%), Gaps = 19/190 (10%)
Query: 182 EVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPVLDNREH-------------AE 228
           E+ ER+LF++A  +P  GYVQG+N+++ P +  F ++ V ++ E+              E
Sbjct: 130 EIFERILFIWAIRHPASGYVQGINDLVTPFFVVFLSEYVEEDVENFDVTNLSQDMLRSIE 189
Query: 229 ADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQY 288
           AD F+  + L+  I+D +  +    + GI + +  L + + + D +V       E+    
Sbjct: 190 ADSFWCMSKLLDGIQDNYTFA----QPGIQKKVKALEELVSRIDEQVHNHFRRYEVEYLQ 245
Query: 289 YSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLN-HICCAMILLVREDIL-AGDFPS 346
           ++FRW+  LL +E PL   +R+WD+  ++   FS  + ++C A ++  R++IL   DF  
Sbjct: 246 FAFRWMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQG 305
Query: 347 IVKLLQHYPS 356
           ++ LLQ+ P+
Sbjct: 306 LLMLLQNLPT 315
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 5e-68
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 7e-06
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 3e-57
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 2e-05
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 2e-29
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 3e-04
2qq8_A334 TBC1 domain family member 14; structural genomics 1e-21
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 3e-19
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 9e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  221 bits (565), Expect = 5e-68
 Identities = 60/311 (19%), Positives = 123/311 (39%), Gaps = 60/311 (19%)

Query: 177 REAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPV---------------- 220
            ++    ++R+L+L+A  +P  GYVQG+N+++ P + TF T+ +                
Sbjct: 106 FKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTY 165

Query: 221 --LDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEK 278
              +     EAD F+  T L+ +I D +I      + GI R +  L+Q +K+ D +++  
Sbjct: 166 MVDEQITDLEADTFWCLTKLLEQITDNYI----HGQPGILRQVKNLSQLVKRIDADLYNH 221

Query: 279 LYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMILLVRED 338
                +    ++FRW+  LL +EF +  V+R+WD+  ++  +    ++   +  +     
Sbjct: 222 FQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVT 281

Query: 339 ILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCALSLLCLP 398
                  S V   + + S     + ++    +    K+   SL                 
Sbjct: 282 PTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNE--------------- 326

Query: 399 VYTAVYYTGDLIADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSS----VD 454
                              F   +C A ++   + ++  DF   +  LQ+ P+      D
Sbjct: 327 -------------------FHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETD 367

Query: 455 IPTVISKAVEL 465
           I  ++S+A   
Sbjct: 368 IEMLLSEAFIW 378
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 99.96
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 98.63
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 98.39
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 98.3
2qq8_A334 TBC1 domain family member 14; structural genomics 98.15
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 97.94
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 97.81
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 97.53
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=2.8e-40  Score=341.73  Aligned_cols=210  Identities=26%  Similarity=0.538  Sum_probs=185.8

Q ss_pred             hhhhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHhCCCCCccCChhHHHHHHHHhhcCCCc-----------------
Q psy4050         158 VLENRVRKAAEDYAPLEEGREAHWEVVERLLFLYAKMNPGQGYVQGMNEIIGPIYYTFATDPV-----------------  220 (472)
Q Consensus       158 ~i~~dv~r~~~~~~~~~~~~~~~~~~L~rIL~~ys~~~P~igY~QGM~~I~a~Ll~~~~~d~~-----------------  220 (472)
                      .|+.|+.|+++++..|..  +..++.|+|||.+|+.+||++|||||||+|+++|++++..+..                 
T Consensus        89 qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l  166 (396)
T 1fkm_A           89 QIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYM  166 (396)
T ss_dssp             HHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTC
T ss_pred             HHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhcc
Confidence            478889899888877764  4578999999999999999999999999999999998753210                 


Q ss_pred             -ccccccchhhHHHHHHHHHHHhHhhhhhccccchHHHHHHHHHHHHHHHhhChHHHHHHHhhccCCccccHHHHHHHhc
Q psy4050         221 -LDNREHAEADCFFVFTNLMGEIRDFFIKSLDETESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLS  299 (472)
Q Consensus       221 -~~~~~~~E~daF~~f~~Lm~~~~~~~~~~ld~~~~gi~~~~~~l~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tLFs  299 (472)
                       .+...+.|++|||||++||+.++++|.+    +.+|+...+..++.+|+.+||+|++||.+.|+++.+|+++||+++|+
T Consensus       167 ~~~~~~~~E~daF~~f~~lm~~~~~~f~~----~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~  242 (396)
T 1fkm_A          167 VDEQITDLEADTFWCLTKLLEQITDNYIH----GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLM  242 (396)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHGGGGGGSST----TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTG
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence             0112334999999999999998888875    56799999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHhcCc---------------------------------------------------C---------
Q psy4050         300 QEFPLPDVLRIWDSLFADE---------------------------------------------------L---------  319 (472)
Q Consensus       300 ~~fp~~~vlriWD~l~~~g---------------------------------------------------~---------  319 (472)
                      ++||+++++||||.+|++|                                                   +         
T Consensus       243 ~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (396)
T 1fkm_A          243 REFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQS  322 (396)
T ss_dssp             GGSCHHHHHHHHHHHHHHHC------------------------------------------------------------
T ss_pred             hhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhcccc
Confidence            9999999999999999988                                                   2         


Q ss_pred             c-hhHHHHHHHHHHHHhhhhcCCCChHHHHHHHccCCCC----CCHHHHHHHHHHhhcc
Q psy4050         320 R-FSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSS----VDIPTVISKAVELAGR  373 (472)
Q Consensus       320 ~-~~~l~~i~lA~L~~~r~~Ll~~d~~~il~~L~~~p~~----~Dv~~ll~~A~~l~~~  373 (472)
                      + ..|++++|+|||..+|++|++.||++++++|+++|..    .|++.++++|+.++..
T Consensus       323 ~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~  381 (396)
T 1fkm_A          323 SLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSL  381 (396)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHH
Confidence            1 3789999999999999999999999999999999963    5899999999988765
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 472
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 2e-23
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 4e-13
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.9 bits (235), Expect = 2e-23
 Identities = 32/215 (14%), Positives = 69/215 (32%), Gaps = 38/215 (17%)

Query: 255 SGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSL 314
            GI R +  L+Q +K+ D +++       +    ++FRW+  LL +EF +  V+R+WD+ 
Sbjct: 3   PGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTY 62

Query: 315 FADELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGRE 374
            ++  +    ++   +  +                                         
Sbjct: 63  LSETSQEVTSSYSMSSNDIKPPVTPTEPR------------------------------- 91

Query: 375 KVHHISLYPKKLITHCALSLLCLPVYTAVYYTGDLIADELRFSFLNHICCAMILLVREDI 434
                S            + L              +       F   +C A ++   + +
Sbjct: 92  ---VASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQL 148

Query: 435 LAGDFPSIVKLLQHYP----SSVDIPTVISKAVEL 465
           +  DF   +  LQ+ P    +  DI  ++S+A   
Sbjct: 149 MEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIW 183
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.9
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.71
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 97.71
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 97.29
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.4e-24  Score=195.78  Aligned_cols=182  Identities=16%  Similarity=0.287  Sum_probs=116.2

Q ss_pred             chHHHHHHHHHHHHHHHhhChHHHHHHHhhccCCccccHHHHHHHhccCCChHHHHHHHHHHhcCcCchhHHHHHHHHHH
Q psy4050         253 TESGINRLMSKLNQTMKQKDLEVWEKLYAIELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSLFADELRFSFLNHICCAMI  332 (472)
Q Consensus       253 ~~~gi~~~~~~l~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tLFs~~fp~~~vlriWD~l~~~g~~~~~l~~i~lA~L  332 (472)
                      +++|+...+..++.+++.+||+||+||.+.|+++.+|+++|++++|+++||+++++||||.+|++|+...+  -.+.+++
T Consensus         1 gqpGi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~~~~~--~~~~~~l   78 (188)
T d1fkma2           1 GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVT--SSYSMSS   78 (188)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-------------
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCchhhh--hhhhhhh
Confidence            46899999999999999999999999999999999999999999999999999999999999999965333  2233333


Q ss_pred             HHhhhhcCCCChHHHHHHHccCCCCCCHHHHHHHHHHhhcccCCCcccccchhhhhhhhcccccccchhhhhhccchhhh
Q psy4050         333 LLVREDILAGDFPSIVKLLQHYPSSVDIPTVISKAVELAGREKVHHISLYPKKLITHCALSLLCLPVYTAVYYTGDLIAD  412 (472)
Q Consensus       333 ~~~r~~Ll~~d~~~il~~L~~~p~~~Dv~~ll~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~s~  412 (472)
                      ...+......+..........                 .......+    +.     .     +... .....-......
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~----~~-----~-----~~~~-~~~~~~~~~~~~  126 (188)
T d1fkma2          79 NDIKPPVTPTEPRVASFVTPT-----------------KDFQSPTT----AL-----S-----NMTP-NNAVEDSGKMRQ  126 (188)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhccccccccccchhhhhhc-----------------cccccccc----cc-----c-----ccch-hhhhhccccccc
Confidence            222222221111100000000                 00000000    00     0     0000 000000113344


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcCChHHHHHHHhcCCCC----CCHHHHHHHHHHhhhh
Q psy4050         413 ELRFSFLNHICCAMILLVREDILAGDFPSIVKLLQHYPSS----VDIPTVISKAVELAGR  468 (472)
Q Consensus       413 ~~~~~fl~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~p~~----~d~~~~~~~a~~~~~~  468 (472)
                      +....+.+++|+||++..|++|+++||++||++|||||+.    .||++|+++|+.||..
T Consensus       127 ~~~~~~~~~~c~A~L~~~r~~Ll~~df~~~l~~Lq~~P~~~~~~~di~~ll~~A~~~~~~  186 (188)
T d1fkma2         127 SSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSL  186 (188)
T ss_dssp             -CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHH
Confidence            5677899999999999999999999999999999999983    5999999999999864
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure