Psyllid ID: psy4064

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620----
Protein Sequence
MDVTLRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVTLVLSFASHKSQVLILVVVNKLRFIPTLHSYS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEcccEEEEEccccccccccEEccccccccEEEEEEcccEEEEEEEEEcEEccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccccccHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccHHHHHcccHHHHHHHccccccccccccccccccHHHHHHHccccccccccccHHHHHHccccccccccccccHHHHHHHcccccHHcccHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccHHHHcccccccHHHHHccccHHHHHHHHHHHHcccccccHHHHHHcccccccccHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHcccccEEEEcccccccccEEEEEEcEEEEEEEEcccccEEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccHHHHHcccccccccccHcccccccEEEEEEccccccEEEEEEccccccEEEEEEEEcccEEEEEEEEEEEccHHHHccccccccccHHHHHHcccccccccHHHHHccccccccccHHHHcccccccccccHHHccccccccccccccHHHcccccHHHHHccccccccccccHHHHccccccccccccccccHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHcccccccccccHHccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHccccccccHHHHHccccccccccccccccccHHHccccccccEEEcccccHHHHHHHHEEcccEEEEEEEccccccEEEEEEHcHccEcccccccc
Coil and Loop (DISEMBL)
mdvtlrpkglglgadksatqittsksntnpeeaklVKNCCVKItggmfknnygklesfnedsGRVVVKLALGDEHVTVVESLLLRVTqseydknsrvinmnkyeeykekdakqsniekvkdksennhrgeqhekqyskyrnssdseyeekkmkpyktnELLSRVILRNSDSEYEEKKMKQyktneprsqnkheqyskqessrSRRDYQerkrkdsdseerhqtshstskdkyefrshhrekeykfvshksrsrhysdsdsegddrykqksnkkydsnqkhtstqerkkystksrdsssssssseyekhkksskhdkhaskyenkkkqsdsreksrknkkrhhssseseesssdsdsssssssseyekhkksskhdkhaskyENIKKQSDSREKrrknkkrhhsssesedsssdssdgekrkrhkkskkkktsdtseeDSYKKRkkhgkkslwvdvglnfglgarvLQINTSVdaqilsssssseyekhkksskhdkhaskyenkkkksdsgeksrknkkrhhssseseesssdssdeEKRKRHKkskkkktsdtseeDSYKKRkkhgkkslwvdvglnfglgarvlQINTSVTLVLSFASHKSQVLILVVVNKLRFIPTLHSYS
Flexible Loop (DISEMBL)
mdvtlrpkglglgadksatqittsksntnpeeaklVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLlrvtqseydknsrvinmnkyeeykekdakqsniekvkdksennhrgeqhekqyskyrnssdseyeekkmkpyktnellsrvilrnsdseyeEKKMkqyktneprsqnkheqyskqessrsrrdyqerkrkdsdseerhqtshstskdkyefrshhrekeykfvshksrsrhysdsdsegddrykqksnkkydsnqkhtstqerkkystksrdsssssssseyekhkksskhdkhaskyenkkkqsdsreksrknkkrhhssseseesssdsdsssssssseyekhkksskhdkhaskyenikkqsdsrekrrknkkrhhsssesedsssdssdgekrkrhkkskkkktsdtseedsykkrkkhgkkslwvDVGLNFGLGARVLQINTSVDAQilsssssseyekhkksskhdkhaskyenkkkksdsgeksrknkkrhhssseseesssdssdeekrkrhkkskkkktsdtseedsykkrkkhgkkslwvDVGLNFGLGARVLQINTSVTLVLSFASHKSQVLILVVVNKLRFIPTLHSYS
Low Complexity Region (SEG)
MDVTLRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQErkkystksrdsssssssseyekhkksskhdkhaskYENKKKQsdsreksrknkkrhhssseseesssdsdsssssssseyekhkksskhdkhaskYENIKKQsdsrekrrknkkrhhsssesedsssdssdgekrkrhkkskkkktsdtseedsYkkrkkhgkkSLWVDVGLNFGLGARVLQINTSVDAQILsssssseyekhkksskhdkhaskyENKKKKSDSGeksrknkkrhhssseseesssdssdeekrkrhkkskkkktsdtseedsYkkrkkhgkkSLWVDVGLNFGLGARVLQINTSVTLVLSFASHKSQVLILVVVNKLRFIPTLHSYS
Disordered region (IsUnstruct)
**********************************LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYD*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SLWVDVGLNFGLGARVLQINTSVDA***********************************************************************************************SLWVDVGLNFGLGARVLQINTSVTLVLSFASHKSQVLILVVVNKLRFIPTL****
Disordered Region (DISOPRED)
***TLRPKGLGLG*************************CCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESL*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GLNFGLGARVLQINTSVTLVLSFASHKSQVLILVVVNKLRFIPTLH***
Disordered Region (DISEMBL)
MDVTLRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEKV*********************************KPYKTNELLSRVILRNSDSE******************************************************************REKEY*************************************************************************************************************************************************************************************************************KSLWVDVGLNFGLGARVLQINTSVDAQI********************************************************************************************KSLWVDVGLNFGLGARVLQINTSVTLVLSFASHKSQVLILVVVNKLRFIPTLHSYS
Disordered Region (DISPRO)
MDVTLRPKGLGLGADKSATQI***********AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSE**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KSLWVDVGLNFGLGARVLQINTSVTLVLSFASHKSQVLILVVVNKLRFIPTLHS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVTLRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVTLVLSFASHKSQVLILVVVNKLRFIPTLHSYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	624	2.2.26 [Sep-21-2011]
Q90X38	506	G patch domain and KOW mo	yes	N/A	0.147	0.181	0.446	2e-15

>sp|Q90X38|GPKOW_DANRE G patch domain and KOW motifs-containing protein OS=Danio rerio GN=gpkow PE=2 SV=2

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 62/103 (60%), Gaps = 11/103 (10%)

Query: 5   LRPKGLGLGADKSAT---QITTSKSNTNP------EEAKLV--KNCCVKITGGMFKNNYG 53
           LRPKGLGLGAD+SA    +    K    P      EE  LV     CV++  G  K+ YG
Sbjct: 210 LRPKGLGLGADRSAIKDLEPGVPKRPPKPGDEKGKEEEALVLGPGGCVQVLAGAHKDLYG 269

Query: 54  KLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSR 96
           K+E  + D+GRVVVKLA+G + VT+++  +  VT+ EYDK S+
Sbjct: 270 KIEGVDPDNGRVVVKLAIGGKTVTIIQHSIKLVTRKEYDKYSK 312


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.299    0.115    0.300 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,920,047
Number of Sequences: 539616
Number of extensions: 9405736
Number of successful extensions: 244489
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2631
Number of HSP's successfully gapped in prelim test: 5219
Number of HSP's that attempted gapping in prelim test: 75575
Number of HSP's gapped (non-prelim): 67897
length of query: 624
length of database: 191,569,459
effective HSP length: 124
effective length of query: 500
effective length of database: 124,657,075
effective search space: 62328537500
effective search space used: 62328537500
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 64 (29.3 bits)

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	624
357627035	439	hypothetical protein KGM_06906 [Danaus p	0.163	0.232	0.504	2e-17
383855660	580	PREDICTED: nitrilase homolog 1-like [Meg	0.153	0.165	0.489	3e-16
380020168	575	PREDICTED: nitrilase homolog 1-like [Api	0.181	0.196	0.460	3e-16
328782156	577	PREDICTED: nitrilase homolog 1-like [Api	0.152	0.164	0.510	3e-16
158301888	423	AGAP001551-PA [Anopheles gambiae str. PE	0.168	0.248	0.445	1e-15
350398535	576	PREDICTED: nitrilase homolog 1-like [Bom	0.182	0.197	0.443	3e-14
195451429	520	GK13859 [Drosophila willistoni] gi|19416	0.241	0.290	0.347	7e-14
194742556	544	GF17928 [Drosophila ananassae] gi|190626	0.192	0.220	0.362	1e-13
195146364	519	GL23008 [Drosophila persimilis] gi|19410	0.198	0.238	0.376	2e-13
91095223	296	PREDICTED: similar to CG10324 CG10324-PA	0.173	0.364	0.449	2e-13

>gi|357627035|gb|EHJ76877.1| hypothetical protein KGM_06906 [Danaus plexippus]

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 5   LRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGR 64
           LRPKGLGLGADK   +   +KS +N EE  +VKN  VKIT G +   YGK+ S +E +GR
Sbjct: 171 LRPKGLGLGADKVVKENQKNKS-SNDEELSIVKNAYVKITSGKYSGYYGKVISLDEHNGR 229

Query: 65  VVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYK 107
           VVV + +  E V++ E ++  VT++E+DK S+VIN   YEEYK
Sbjct: 230 VVVDIIMKRETVSLSEFMMQPVTKAEFDKQSKVINSQSYEEYK 272

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855660|ref|XP_003703328.1| PREDICTED: nitrilase homolog 1-like [Megachile rotundata]

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 65/96 (67%)

Query: 5   LRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGR 64
           LRPKG+GLGADK   Q  T+ S    EE K+ K   VKI  G   NNYG++E F++D+GR
Sbjct: 212 LRPKGMGLGADKVTLQKKTTDSKKTEEELKIEKGTFVKIIAGKQSNNYGQIEGFDDDAGR 271

Query: 65  VVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINM 100
           +++KLALG   ++V E ++  VT+SEY KNS+V+  
Sbjct: 272 LIIKLALGGNIISVNEFMVQPVTKSEYSKNSKVLTF 307

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020168|ref|XP_003693966.1| PREDICTED: nitrilase homolog 1-like [Apis florea]

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 74/115 (64%), Gaps = 2/115 (1%)

Query: 5   LRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGR 64
           LRPKG+GLGADK  TQ   + SN   EE K+ K   VKI  G   NNYG++E F++D+GR
Sbjct: 208 LRPKGMGLGADK-VTQQKNTDSNKQEEELKIEKGTFVKIIAGKQSNNYGQIEGFDDDAGR 266

Query: 65  VVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNK-YEEYKEKDAKQSNIEK 118
           +++KLALG   ++V E ++  VT+SEY KNS+V+       + +  + K  NIEK
Sbjct: 267 LIIKLALGGNIISVNEFMVQPVTKSEYSKNSKVLTFRLSLVQLEVHEVKTKNIEK 321

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782156|ref|XP_624150.2| PREDICTED: nitrilase homolog 1-like [Apis mellifera]

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 1/96 (1%)

Query: 5   LRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGR 64
           LRPKG+GLGADK   Q  TS SN   EE K+ K   VKI  G   NNYG++E F++D+GR
Sbjct: 210 LRPKGMGLGADKVTQQKNTS-SNKQEEELKIEKGTFVKIIAGKQSNNYGQIEGFDDDAGR 268

Query: 65  VVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINM 100
           +++KLALG   ++V E ++  VT+SEY KNS+V+  
Sbjct: 269 LIIKLALGGSIISVNEFMVQPVTKSEYSKNSKVLTF 304

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158301888|ref|XP_001689338.1| AGAP001551-PA [Anopheles gambiae str. PEST] gi|157012688|gb|EDO63243.1| AGAP001551-PA [Anopheles gambiae str. PEST]

 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 73/110 (66%), Gaps = 5/110 (4%)

Query: 5   LRPKGLGLGADKS--ATQITTSKSNTNPEEAKLVKNC--CVKITGGMFKNNYGKLESFNE 60
           LRPKGLGLGADK+   T  T +  +T P+E  LV  C   VKI  G  +  YG ++SF+E
Sbjct: 185 LRPKGLGLGADKTIKGTVGTGNNRSTAPDE-NLVMKCGAAVKIAMGKLQGKYGLIKSFDE 243

Query: 61  DSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKD 110
           D+ RV++++++G +   + E  +  VT  EY+KNS+VIN  KYE+YK+++
Sbjct: 244 DASRVLIEMSIGKDREWLNEHAVQLVTMQEYNKNSKVINSIKYEQYKDRE 293

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398535|ref|XP_003485224.1| PREDICTED: nitrilase homolog 1-like [Bombus impatiens]

 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 75/115 (65%), Gaps = 1/115 (0%)

Query: 5   LRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGR 64
           LRPKG+GLGADK A Q   + S    EE K+ K   VKI  G   NNYG++E F++D+GR
Sbjct: 208 LRPKGMGLGADKVALQKKNTDSKKEEEELKIEKGTFVKIIAGKQSNNYGQIEGFDDDAGR 267

Query: 65  VVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMN-KYEEYKEKDAKQSNIEK 118
           +++KLALG   ++V E ++  VT+SEY KNS+V+ +     + +  + K+ NIE+
Sbjct: 268 LIIKLALGGNIISVNEFMVQPVTKSEYSKNSKVLTLRLALVQLEVNEVKRKNIER 322

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195451429|ref|XP_002072915.1| GK13859 [Drosophila willistoni] gi|194169000|gb|EDW83901.1| GK13859 [Drosophila willistoni]

 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 10/161 (6%)

Query: 5   LRPKGLGLGADKSATQITTSKSNTNPEEAKLV---KNCCVKITGGMFKNNYGKLESFNED 61
           LRPKG+GLGADK+   +        PE+ +++   K   V+I GG  K+ YG++E F++ 
Sbjct: 196 LRPKGMGLGADKA---LKPKALLVQPEKNEVLEIKKQAYVRILGGKLKDQYGQVEGFDDH 252

Query: 62  SGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNI----E 117
           +GRV+VK+A+G       E L   V+  EY +  + IN  KYEE+K+ + K   I    E
Sbjct: 253 AGRVIVKMAIGGAKEAFNEFLCQPVSSKEYSQYGKCINTAKYEEFKKLENKHGQIIVKRE 312

Query: 118 KVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTN 158
           K  D+ +   R E  E++    R+     Y+E++ KPY+ +
Sbjct: 313 KSADRDQREDRDEDREQRQRLSRDDERRRYKEEERKPYRLD 353

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194742556|ref|XP_001953767.1| GF17928 [Drosophila ananassae] gi|190626804|gb|EDV42328.1| GF17928 [Drosophila ananassae]

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 76/127 (59%), Gaps = 7/127 (5%)

Query: 5   LRPKGLGLGADKSATQITTSKSNTNPEEAKLV---KNCCVKITGGMFKNNYGKLESFNED 61
           LRPKG+GLGADK+   +        PE+ +++   K   V+I GG  K+ YG++E F++ 
Sbjct: 193 LRPKGMGLGADKA---LKPKALLVQPEKNEVLEIKKQAYVRILGGKQKDQYGQIEGFDDH 249

Query: 62  SGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEKVKD 121
           +GRV+VK+A+G       E L   V++ EY +  + IN  KYEE+K+++ +   I  +KD
Sbjct: 250 AGRVIVKMAIGGAKEAFNEFLCQPVSRKEYTQYGKCINTAKYEEFKKQENEHGQI-IIKD 308

Query: 122 KSENNHR 128
           +  ++ R
Sbjct: 309 EKSSDRR 315

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195146364|ref|XP_002014156.1| GL23008 [Drosophila persimilis] gi|194103099|gb|EDW25142.1| GL23008 [Drosophila persimilis]

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 5   LRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGR 64
           LRPKG+GLGADK+   +       N E  ++ K   V+I GG  K+ YG++E F++ +GR
Sbjct: 193 LRPKGMGLGADKALKPMALLVQPENNEVLEIKKQAFVRILGGKQKDQYGQIEGFDDHAGR 252

Query: 65  VVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDK-S 123
           V+VK+A+G       E L   V++ EY +  + IN  KY E+K+++ +   I   ++K S
Sbjct: 253 VIVKMAIGGNKEAFNEFLCQPVSRKEYSQYGKCINSAKYNEFKKQENEHGQIIVRQEKPS 312

Query: 124 ENNHR 128
           E  HR
Sbjct: 313 EVRHR 317

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91095223|ref|XP_970025.1| PREDICTED: similar to CG10324 CG10324-PA [Tribolium castaneum]

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 5   LRPKGLGLGADKSATQITTSKSNTNPEEA-KLVKNCCVKITGGMFKNNYGKLESFNEDSG 63
           LRPKGLGLGA+K     T S+S     +A +LVK    KI  G  ++ Y +++  ++++ 
Sbjct: 120 LRPKGLGLGANKMVNSSTPSQSVDKEGKALQLVKGAYGKIIAGNHRSQYCQVQGLDDENC 179

Query: 64  RVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAK 112
           RV+VK AL +E +++ E L++ VT  EY+K SRVIN  KYEE+ EK AK
Sbjct: 180 RVIVKTALTNEILSLNEFLIVPVTSEEYNKCSRVINNAKYEEHVEKSAK 228

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	624
FB|FBgn0038454	543	CG10324 [Drosophila melanogast	0.432	0.497	0.290	7.8e-23
ZFIN|ZDB-GENE-030616-159	506	t54l "T54 protein-like" [Danio	0.243	0.300	0.360	2.1e-15
TAIR|locus:2098443	2081	AT3G28770 "AT3G28770" [Arabido	0.421	0.126	0.239	2.4e-11
DICTYBASE|DDB_G0289719	1419	DDB_G0289719 "SFRS2-interactin	0.371	0.163	0.252	5.5e-11
WB|WBGene00011237	462	R11A8.2 [Caenorhabditis elegan	0.272	0.367	0.255	1.3e-10
UNIPROTKB|Q21924	462	mos-2 "Protein mos-2 homolog"	0.272	0.367	0.255	1.3e-10
DICTYBASE|DDB_G0268098	638	nop58 "nucleolar protein 58" [	0.280	0.274	0.273	8.5e-10
GENEDB_PFALCIPARUM|PFD1175w	1222	PFD1175w "Plasmodium falciparu	0.290	0.148	0.229	9.7e-10
UNIPROTKB|Q8IFL9	1222	trophozoite antigen R45 "Serin	0.290	0.148	0.229	9.7e-10
UNIPROTKB|E2RSE4	738	PPIG "Uncharacterized protein"	0.296	0.250	0.282	1.1e-09

FB|FBgn0038454 CG10324 [Drosophila melanogaster (taxid:7227)]

 Score = 281 (104.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 86/296 (29%), Positives = 145/296 (48%)

Query:     5 LRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGR 64
             LRPKG+GLGADK+             E  ++ K   V+I GG  K+ YG+++ F++ +GR
Sbjct:   193 LRPKGMGLGADKALKPKALLVQPEKNEVLEIKKQAYVRILGGKQKDQYGQIQGFDDHAGR 252

Query:    65 VVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSE 124
             V+VK+A+G       E L   V++ EY +  + IN  KYEE+K+ + +   I  VK   +
Sbjct:   253 VIVKMAIGGAKEAFNEFLCQPVSRKEYSQYGKCINTAKYEEFKKNENEHGQII-VK---Q 308

Query:   125 NNHRGEQHEKQYSKYRNSSDSEYEEKKMKP--YKTNELLSRVILRNSDSE-YEEKKMKQY 181
              N  G +   +  + R+  D    +K  KP   ++++   R+  +  D   Y+ +  K Y
Sbjct:   309 ENPSGRRDRDRREEIRSDRDEAQNQKSSKPGDQRSSKEDYRMKCKEEDKRSYKYEDKKTY 368

Query:   182 KTNEPRS-QNKHEQYSKQESSRSRRDYQERK--RKDSDS----EERHQT------SHSTS 228
             K    R+ +++ + Y + +S++   D +E+K  R  S S    EER +         S S
Sbjct:   369 KDEHRRTYKDERKSYKEAKSNKEEVD-REKKYVRSGSSSVSKREERERRRSPSPRGRSPS 427

Query:   229 KDKYEFRSHHREKEYKFVSH-KSRSRHYSDS----DSEGDDRYKQKSNKKYDSNQK 279
             K K E R   R +  +     KS S    D+    +S+ D  Y+++ +KK  S+ K
Sbjct:   428 KSKREDRDQKRSQSPRSTRRTKSSSDEADDTGESTESDSDSAYERRKHKKKSSSHK 483

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-030616-159 t54l "T54 protein-like" [Danio rerio (taxid:7955)]

 Score = 220 (82.5 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 61/169 (36%), Positives = 90/169 (53%)

Query:     5 LRPKGLGLGADKSATQIT---TSKSNTNP------EEAKLV--KNCCVKITGGMFKNNYG 53
             LRPKGLGLGAD+SA +       K    P      EE  LV     CV++  G  K+ YG
Sbjct:   210 LRPKGLGLGADRSAIKDLEPGVPKRPPKPGDEKGKEEEALVLGPGGCVQVLAGAHKDLYG 269

Query:    54 KLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVIN-MNKY----EEYKE 108
             K+E  + D+GRVVVKLA+G + VT+++  +  VT+ EYDK S+ ++ ++K     E  KE
Sbjct:   270 KIEGVDPDNGRVVVKLAIGGKTVTIIQHSIKLVTRKEYDKYSKDLSRLSKAHKDKEREKE 329

Query:   109 KDAKQSNIEKVKDKSENNHRGEQHEKQYS-KYRNSSDSEYEEKKMKPYK 156
             ++ K+   +++  K E        EK    K R   +S  + +K  P K
Sbjct:   330 REQKREQEQRLNGKDERGKTDRSREKDRDQKKRKHRESSTDREKPPPAK 378

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2098443 AT3G28770 "AT3G28770" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 66/276 (23%), Positives = 126/276 (45%)

Query:    15 DKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDE 74
             DKS+T+     +N    + +      VK      K   G  E  N+D+     K    D+
Sbjct:   888 DKSSTKEVRDFANNMDIDVQKGSGESVKYKKDEKKE--GNKEE-NKDTINTSSKQKGKDK 944

Query:    75 HVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEK 134
                  ES    + + E DK   V N  K +E  +K+  +S   K+K+++++N   E+ E 
Sbjct:   945 KKKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNK--EKKES 1002

Query:   135 QYSKYRNSSDSEYEEKKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKH-E 193
             + S  +N    EYEEKK K   T E   +   ++ D + EEK  ++ K+ + + +++  +
Sbjct:  1003 EDSASKNREKKEYEEKKSK---TKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLK 1059

Query:   194 QYSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSK--DKYEFRSHHREKEYKFVSHKSR 251
                K+E ++ +++ +  K K  + ++ H+ + S  K  DK E + H   K  K    K  
Sbjct:  1060 AKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKD 1119

Query:   252 SRHYSDSDS--EGDDRYKQKSNKKYDSNQKHTSTQE 285
                  D +S  + +D+ ++K ++     +K +  +E
Sbjct:  1120 MEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKE 1155

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

DICTYBASE|DDB_G0289719 DDB_G0289719 "SFRS2-interacting protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 187 (70.9 bits), Expect = 5.5e-11, P = 5.5e-11
 Identities = 62/246 (25%), Positives = 113/246 (45%)

Query:    42 KITGGMFKNNYGKLESFNEDSGRVVVKLAL--GDEHVTVVESLLLRVTQSEYDKNSRVIN 99
             K+T   F++ + + E  ++DS + V K A     + VT      L+    E  K  +   
Sbjct:   587 KVTKSKFESEH-ESEEESKDSKKNVKKSASKQSKKKVTQESDEELKSESDEEIKKEKSKK 645

Query:   100 MNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNE 159
             + K +E K K+ ++   EK K++ E   R E+ EK+  K     + E E++K K  K  E
Sbjct:   646 VKKEKENKLKEKEKKEEEKRKEEKEKLER-EKKEKEKEK-----EKEKEKEKEKEKKRIE 699

Query:   160 LLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEE 219
                + I  N + E ++K+  + K  E   +++ E+  K+E  R   +  ERK K+   E+
Sbjct:   700 KEKKKIRENEEKERKQKEKDEKKRKEKEEKDRKEKEEKEEKERKENEENERKEKE---EK 756

Query:   220 RHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQK 279
             + +      K++ E R    EKE K    K R +   + D +  +R + +  K+ +  +K
Sbjct:   757 KRKEKERKEKEEKE-RKEKEEKEIKEKEEKKR-KEKEEKDRKEKERKENEEKKRKEKEEK 814

Query:   280 HTSTQE 285
                 +E
Sbjct:   815 ERKEKE 820

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

WB|WBGene00011237 R11A8.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 177 (67.4 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 46/180 (25%), Positives = 96/180 (53%)

Query:     6 RPKGLGLGADKSATQITTSKS---NTNPEEAKL--VK-NCCVKITGGMFKNNYGKLESFN 59
             RP GLGLGA      +  +K+   ++  EE KL  +K    +K+  G  K  YGK+E  +
Sbjct:   188 RPPGLGLGATPK-NPVGKNKNTGESSKAEEEKLEEIKVGSFIKVVDGRNKGVYGKVEGRD 246

Query:    60 EDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEK-DAKQSNIEK 118
             +DS  + ++ A+G + + V + + + V+  EY+++S+ +N ++Y++ K++ + ++  +E 
Sbjct:   247 DDSNSLFIRTAIGGKTMKVSQIVAVAVSAKEYERDSKCLNKSEYDKEKDRLETERKKLES 306

Query:   119 VKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNELLSRVILRN--SDSEYEEK 176
                 +  +   + ++ + S  ++  +S   E+  K +   +LL R I  +    S YE+K
Sbjct:   307 QPPSTSTSQSSKDYKSKSSSSKHDKNSSEYERNDKMWARTDLLVRFIDEDFKRGSLYEQK 366

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|Q21924 mos-2 "Protein mos-2 homolog" [Caenorhabditis elegans (taxid:6239)]

 Score = 177 (67.4 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 46/180 (25%), Positives = 96/180 (53%)

Query:     6 RPKGLGLGADKSATQITTSKS---NTNPEEAKL--VK-NCCVKITGGMFKNNYGKLESFN 59
             RP GLGLGA      +  +K+   ++  EE KL  +K    +K+  G  K  YGK+E  +
Sbjct:   188 RPPGLGLGATPK-NPVGKNKNTGESSKAEEEKLEEIKVGSFIKVVDGRNKGVYGKVEGRD 246

Query:    60 EDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEK-DAKQSNIEK 118
             +DS  + ++ A+G + + V + + + V+  EY+++S+ +N ++Y++ K++ + ++  +E 
Sbjct:   247 DDSNSLFIRTAIGGKTMKVSQIVAVAVSAKEYERDSKCLNKSEYDKEKDRLETERKKLES 306

Query:   119 VKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNELLSRVILRN--SDSEYEEK 176
                 +  +   + ++ + S  ++  +S   E+  K +   +LL R I  +    S YE+K
Sbjct:   307 QPPSTSTSQSSKDYKSKSSSSKHDKNSSEYERNDKMWARTDLLVRFIDEDFKRGSLYEQK 366

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0268098 nop58 "nucleolar protein 58" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 8.5e-10, P = 8.5e-10
 Identities = 52/190 (27%), Positives = 89/190 (46%)

Query:    87 TQSEYDKNSRVINMNKYEEYKEKDAKQSNIEK--VKDKSENNHRGEQHEKQYSKYRNSSD 144
             + S+ D +S   + +  EE K K +K+S  E+  V  + +   + ++ E   +K      
Sbjct:   460 SSSDSDSSS---DSDSSEEEKSKKSKKSKKEETPVAKEEKKEKKSKKEETPVAKEEKKEK 516

Query:   145 SEYEEKKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNE-P-RSQNKHEQYSKQESSR 202
              E +EKK K  K  E        +   E +EKK K+ KT E P   + K E+  K+E   
Sbjct:   517 EEKKEKKDKKEKKEEK------EDKKEEKKEKKDKKEKTEETPVAKEEKKEKKEKKEEKE 570

Query:   203 SRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEG 262
              ++D +E+K K  + EE+ +     S  K + +    +KE K  S + + R   D D E 
Sbjct:   571 EKKDKKEKKEKKEEKEEKKEKKEKKSSSKEDKKEKEEKKEKKSSSKEDKKR--KDRDEEP 628

Query:   263 DDRYKQKSNK 272
             +++  +KS K
Sbjct:   629 EEKKSKKSKK 638

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PFD1175w PFD1175w "Plasmodium falciparum trophozoite antigen r45-like protein" [Plasmodium falciparum (taxid:5833)]

 Score = 175 (66.7 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 44/192 (22%), Positives = 90/192 (46%)

Query:    92 DKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSD--SEYEE 149
             D N +  + +K E   + ++   N  +   K+E+NH+ E + K  S +++ S+  S++  
Sbjct:   515 DSNHKSDSNHKNESNHKNESNHKN--ESNHKNESNHKNESNHKNDSNHKSDSNHMSDHNH 572

Query:   150 KKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEP-RSQNKHEQYSKQESSRSRR-DY 207
             K    +K++   + +   N  S+   K    + ++   +S N H+  +  +S  + + D+
Sbjct:   573 KSDNNHKSDH--NHMSDHNHKSDNNHKSDNNHMSDHNHKSDNNHKSDNNHKSDNNHKSDH 630

Query:   208 QERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYK 267
                   +  S+  H++ H+   D      H+   ++   +HKS   H SD + + D+ +K
Sbjct:   631 NHMSDHNHKSDNNHKSDHNHKSDSNHMSDHNHMSDH---NHKSDHNHKSDHNHKSDNNHK 687

Query:   268 QKSNKKYDSNQK 279
               SN K DSN K
Sbjct:   688 SDSNHKSDSNHK 699

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8IFL9 trophozoite antigen R45 "Serine/Threonine protein kinase, FIKK family" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 175 (66.7 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 44/192 (22%), Positives = 90/192 (46%)

Query:    92 DKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSD--SEYEE 149
             D N +  + +K E   + ++   N  +   K+E+NH+ E + K  S +++ S+  S++  
Sbjct:   515 DSNHKSDSNHKNESNHKNESNHKN--ESNHKNESNHKNESNHKNDSNHKSDSNHMSDHNH 572

Query:   150 KKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEP-RSQNKHEQYSKQESSRSRR-DY 207
             K    +K++   + +   N  S+   K    + ++   +S N H+  +  +S  + + D+
Sbjct:   573 KSDNNHKSDH--NHMSDHNHKSDNNHKSDNNHMSDHNHKSDNNHKSDNNHKSDNNHKSDH 630

Query:   208 QERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYK 267
                   +  S+  H++ H+   D      H+   ++   +HKS   H SD + + D+ +K
Sbjct:   631 NHMSDHNHKSDNNHKSDHNHKSDSNHMSDHNHMSDH---NHKSDHNHKSDHNHKSDNNHK 687

Query:   268 QKSNKKYDSNQK 279
               SN K DSN K
Sbjct:   688 SDSNHKSDSNHK 699

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|E2RSE4 PPIG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 172 (65.6 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 57/202 (28%), Positives = 101/202 (50%)

Query:    85 RVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSD 144
             R  +       R I  +K E  + K+ ++S + ++K+K   +HR   H  +    +N   
Sbjct:   353 RAQRMRVSSGERWIKGDKSELNEIKENQRSPV-RIKEKKVIDHR---HVSESPNRKNE-- 406

Query:   145 SEYEEKKMKPYKTNELLSRVILRNS--DSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSR 202
                +EKK+K +K+N    R I RNS  D +Y + K+K+   ++ RS++K +  SK+  ++
Sbjct:   407 ---KEKKVKDHKSNSK-ERDIRRNSEKDEKYNKNKVKKRAKSKSRSKSKEKSKSKERDTK 462

Query:   203 SRRDYQERKR---KDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSD 259
               R  ++R R   K+ D E   +   S SK K + RS  +EK  K +  KS + H  +  
Sbjct:   463 HNRHEEKRMRSRSKERDHEIIKEKEKSDSKGKDQERSRSKEKS-KQLESKS-NEHDHNKS 520

Query:   260 SEGDDRYKQKSNKKYDSNQKHT 281
              E D R + +S ++  +  KH+
Sbjct:   521 KEKDRRAQSRSRERDTTKGKHS 542

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	624
cd13152	57	cd13152, KOW_GPKOW_A, KOW motif of the "G-patch do	1e-12
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	3e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-07
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	2e-06
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	4e-06
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	2e-05
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	2e-05
TIGR00934	800	TIGR00934, 2a38euk, potassium uptake protein, Trk	2e-05
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	1e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	3e-04
PTZ00112	1164	PTZ00112, PTZ00112, origin recognition complex 1 p	0.001
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00112	1164	PTZ00112, PTZ00112, origin recognition complex 1 p	0.004

>gnl|CDD|240516 cd13152, KOW_GPKOW_A, KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 28/57 (49%), Positives = 36/57 (63%)

Query: 38 NCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKN 94
             VKI  G  K  YGK+E F+ED+ RV+VKLA+G E V+V E  +  VT+ EY K 
Sbjct: 1  GAYVKILSGKHKGLYGKVEGFDEDNSRVIVKLAIGGETVSVSEFAVKLVTKKEYKKY 57

GPKOW contains one G-patch domain and two KOW motifs. GPKOW is a nuclear protein that regulated by catalytic (C) subunit of Protein Kinase A (PKA) and bind RNA in vivo. PKA may be involved in regulating multiple steps in post-transcriptional processing of pre-mRNAs. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. GPKOW is also known as T54 protein or MOS2 homolog. Length = 57

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 35/238 (14%), Positives = 87/238 (36%), Gaps = 3/238 (1%)

Query: 325  KKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENI 384
            ++  + +E+  + +       +S+     S         + +K KKSS      +     
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGN 1197

Query: 385  KKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRK 444
             K+ DS EKR+ + K  +  S S   S    + ++ ++ K  K       S++++  K  
Sbjct: 1198 SKRVDSDEKRKLDDKPDNKKSNS---SGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSS 1254

Query: 445  KHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENK 504
            +   +    D+           +++    +    S                      +  
Sbjct: 1255 EDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRL 1314

Query: 505  KKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDSYKK 562
            +    + +K +K++K+     +S+     +S  +  +  ++ +KKK+  +SE+D   +
Sbjct: 1315 EGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSE 1372

Length = 1388

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 53.2 bits (127), Expect = 4e-07
 Identities = 76/490 (15%), Positives = 196/490 (40%), Gaps = 19/490 (3%)

Query: 90   EYDKNSRVINMNKYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEE 149
            + +   +   + K EE K+   +    E+ ++  E     E     +++ + +  +E   
Sbjct: 1219 KAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278

Query: 150  KKMKPYKTNELLSRVILRNSDS--EYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDY 207
            K  +  K  E       + ++   + +E K K  +  +     K  + +K+++  +++  
Sbjct: 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338

Query: 208  QERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYK 267
            +E K+    ++   +          E  +   + E      +   +    +  + +++ K
Sbjct: 1339 EEAKKAAEAAKAEAE------AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392

Query: 268  QKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQ 327
                KK     K  + + +K  + K +   +   + E +K  ++ K  + A K +  KK+
Sbjct: 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452

Query: 328  SDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQ 387
            ++  +K+ + KK+   + +++E+   ++ +  +  ++ +  +   K D+     E  KK 
Sbjct: 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512

Query: 388  SDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHG 447
             ++++     K      +E    + ++   E++K+  + KK +    +EE    K+K   
Sbjct: 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE----KKKAEE 1568

Query: 448  KKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYEN---- 503
             K    D  +         +   +   +++      +  K +++ K ++   K E     
Sbjct: 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628

Query: 504  ---KKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRHKKSKKKKTSDTSEEDSY 560
               KKK     +K  + KK+     ++EE +   + EE +K  +  KK + +  +EED  
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688

Query: 561  KKRKKHGKKS 570
            K  +   K++
Sbjct: 1689 KAAEALKKEA 1698

Length = 2084

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 11/249 (4%)

Query: 175  EKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEF 234
            E+ +++ +  E +   K ++   +   ++ +    RK K    E++ + S +    K   
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASK---LRKPKLKKKEKKKKKSSADKSKKASV 1194

Query: 235  RSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSR 294
              + +  +               S+S G D+   +  K           + +K  S+KS 
Sbjct: 1195 VGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSS 1254

Query: 295  DSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDS 354
            + +   SS +  K  K     K  S  +        R     N      S  S  +    
Sbjct: 1255 EDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESN----GGSKPSSPTKKKV 1310

Query: 355  DSSSSSSSSEYEKHKKSSK----HDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDS 410
                  S +  +K KKS K      K  ++ +       SR  RR  KK+  SSSE +D 
Sbjct: 1311 KKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDD 1370

Query: 411  SSDSSDGEK 419
            S      ++
Sbjct: 1371 SEVDDSEDE 1379

Length = 1388

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 45/239 (18%), Positives = 84/239 (35%), Gaps = 11/239 (4%)

Query: 303  SEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSS 362
             E  K ++     K  +    K K     +K +K+       +    +S   DS      
Sbjct: 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKL 1209

Query: 363  SEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKR 422
             +   +KKS+         E  K +      +R   K+++SS  SED+   SSD   ++ 
Sbjct: 1210 DDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEG 1269

Query: 423  HKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSS-- 480
              K+  K+ S          ++  G+           G           V  ++  S   
Sbjct: 1270 KPKNAPKRVSAVQYSPPPPSKRPDGES---------NGGSKPSSPTKKKVKKRLEGSLAA 1320

Query: 481  SSSEYEKHKKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEK 539
               + +  KK+++  K  ++ +       S    R  KK+  SSSE ++ S     E++
Sbjct: 1321 LKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDE 1379

Length = 1388

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 41/263 (15%), Positives = 80/263 (30%), Gaps = 20/263 (7%)

Query: 273  KYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSRE 332
            + +  +     + + K   K+          + +K KKSS      +      K+ DS E
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDE 1205

Query: 333  KSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSRE 392
            K + + K  +  S S  S  + D    +   +    +  SK +  +   E+  + S    
Sbjct: 1206 KRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDL 1265

Query: 393  KRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLW 452
             +    K       +   S                +          + KK KK  + SL 
Sbjct: 1266 SKEGKPKNAPKRVSAVQYSPPPPSKRP------DGESNGGSKPSSPTKKKVKKRLEGSL- 1318

Query: 453  VDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEKHKKSSKHDKHASKYENKKKKSDSGE 512
                           +     ++  ++       + K++S           +KKKSDS  
Sbjct: 1319 -------------AALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSS 1365

Query: 513  KSRKNKKRHHSSSESEESSSDSS 535
            +   + +   S  E +E   D  
Sbjct: 1366 EDDDDSEVDDSEDEDDEDDEDDD 1388

Length = 1388

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 18/265 (6%)

Query: 102  KYEEYKEKDAKQSNIEKVKDKSENNHRGEQHEKQYSKYRNSSDSEYEEKKMKPYKTNELL 161
              EE +E + K+   E+   + ++  +G+  +      R     + E+KK K        
Sbjct: 1140 ALEEQEEVEEKEIAKEQ---RLKSKTKGKASKL-----RKPKLKKKEKKKKKSSADKSKK 1191

Query: 162  SRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERH 221
            + V+  +   + +EK+    K ++     K       +     +  + +K      + + 
Sbjct: 1192 ASVVGNSKRVDSDEKR----KLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKK 1247

Query: 222  QTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHT 281
              S  +S+D  EF S    KE K  +   R      S      R   +SN     +   T
Sbjct: 1248 NNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPS-SPT 1306

Query: 282  STQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRH 341
              + +K+             S +    KK SK     ++ +       SR   R  KK+ 
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSK-----TRVKQASASQSSRLLRRPRKKKS 1361

Query: 342  HSSSESEESSSDSDSSSSSSSSEYE 366
             SSSE ++ S   DS       + +
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDED 1386

Length = 1388

>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 49/267 (18%), Positives = 89/267 (33%), Gaps = 13/267 (4%)

Query: 141 NSSDSEYEEKKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQYSKQES 200
            +          K     + L        D   +     +  T    S +  E + K   
Sbjct: 166 VAGRVTVPHGSAKRRDFQDKLFSGEFVKRDEPDQNSPDVKSDTRADESISDLE-FEKFAK 224

Query: 201 SRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDS 260
            R  RD        S      Q  H   ++K    S   E+  + +  +   R  S SD 
Sbjct: 225 RRGSRDVDPEDLYRSIMM--LQGIHERIREKSSANSRSDERSSESIQEQVE-RRPSTSDI 281

Query: 261 EGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASK 320
           E   R  Q   ++YD      + + R+  +    ++         +  +K +  +  A  
Sbjct: 282 E---RNSQSLTRRYDDKSFDKAVRLRRSKTIDRAEACDLEELDRAKDFEKMTYDNWKAHH 338

Query: 321 YENKK-KQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHDKHAS 379
            + K  +      K RK  +    S  + E + +  S+SSS  S  E+   SS+ + + +
Sbjct: 339 RKKKNFRPRGWNLKFRKASRFPKDSDRNYEDNGNHLSASSSFGS--EEPSLSSEENLYPT 396

Query: 380 KYENIKKQSDSREKRRKNKKRHHSSSE 406
                KK+ DSR    K    ++ S +
Sbjct: 397 YN---KKREDSRHTLSKTMSTNYLSWQ 420

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system [Transport and binding proteins, Cations and iron carrying compounds]. Length = 800

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 10/237 (4%)

Query: 306 EKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSS-SESEESSSDSDSSSSSSSSE 364
           +++ K  +  +H  + E  K++   REK ++ ++RHHS  +ES+E  + +      +   
Sbjct: 79  DQYVKLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEM 138

Query: 365 YEKHKKSSKHDK-----HASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEK 419
            E    S + DK     + +   ++ K     EK    K R+  +S+S +   D    EK
Sbjct: 139 PENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKG-DVPAVEK 197

Query: 420 RKRHKKSKKKKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSS 479
           + +  K K+KK  +  E D  KK++  G KSL + +  +    A V + + +  A  +S 
Sbjct: 198 KSKKPKKKEKKEKE-KERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSG 256

Query: 480 SSSSEYEKHKKSSKHD--KHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDS 534
           ++        K ++ +  K + K++ KK++ +  EK +K K  HH    S+  +   
Sbjct: 257 TAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQP 313

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 39/242 (16%), Positives = 86/242 (35%), Gaps = 10/242 (4%)

Query: 204  RRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSDSDSEGD 263
                +E++  +   +E  +     SK K +     + K  K    K +S       +   
Sbjct: 1138 EEALEEQEEVEE--KEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKAS-- 1193

Query: 264  DRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKHASKYEN 323
                  ++K+ DS++K     +     + S  S       +  K KKSS     + K  +
Sbjct: 1194 ---VVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNS 1250

Query: 324  KKKQSDSREKSRKNKKRHHSSSESEESSS---DSDSSSSSSSSEYEKHKKSSKHDKHASK 380
             K   D+ E S  +  +      + +  S    S    S                     
Sbjct: 1251 SKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKV 1310

Query: 381  YENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTSEEDSY 440
             + ++    + +K++K++K+     +S+     +S  +  +  ++ +KKK+  +SE+D  
Sbjct: 1311 KKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDD 1370

Query: 441  KK 442
             +
Sbjct: 1371 SE 1372

Length = 1388

>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 61/301 (20%), Positives = 109/301 (36%), Gaps = 27/301 (8%)

Query: 136 YSKYRNSSDSEYEEKKMKPYKTNELLSRVILRNSDSEYEEKKMKQYKTNEPRSQNKHEQY 195
            S Y   S+S   +   K  K N+     I  ++    +E   KQ K    ++   H   
Sbjct: 144 TSIYSCLSNSLSSKHSPKVIKENQSTHVNISSDNSPRNKEISNKQLKK---QTNVTHTT- 199

Query: 196 SKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHY 255
              +  RS R+    K   +D         +  KDK   +    +K+ K  S KS+    
Sbjct: 200 CYDKMRRSPRNTSTIKNNTNDK----NKEKNKEKDKNIKKDRDGDKQTKRNSEKSK---- 251

Query: 256 SDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHD 315
              +S  D R  +   K+   ++K+  +  R     K +       S  Y  H       
Sbjct: 252 -VQNSHFDVRILRSYTKENKKDEKNVVSGIRSSVLLKRKSQCLRKDSYVYSNH------- 303

Query: 316 KHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKHKKSSKHD 375
                 + K K  D +    +N    +S+++   SS+   S+  S+ +    +KK +   
Sbjct: 304 ------QKKAKTGDPKNIIHRNNGSSNSNNDDTSSSNHLGSNRISNRNPSSPYKKQTTT- 356

Query: 376 KHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKKKKTSDTS 435
           KH +  +N K       ++  +  RHH++     S    S+ + R   +KS+  K     
Sbjct: 357 KHTNNTKNNKYNKTKTTQKFNHPLRHHATINKRSSMLPMSEQKGRGASEKSEYIKEFTME 416

Query: 436 E 436
           E
Sbjct: 417 E 417

Length = 1164

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 31/125 (24%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 198 QESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYEFRSHHREKEYKFVSHKSRSRHYSD 257
           +E  R R   + R R  S   ER +     S+D+  FR  HR    +     SR R    
Sbjct: 3   EEPDREREKSRGRDRDRS--SERPR---RRSRDRSRFRDRHRRSRERSYREDSRPRDRRR 57

Query: 258 SDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKHKKSSKHDKH 317
            DS      +  S ++     +  S   R     + R    S S+   +  KK S  D  
Sbjct: 58  YDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIK 117

Query: 318 ASKYE 322
              YE
Sbjct: 118 PPGYE 122

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.003
 Identities = 54/322 (16%), Positives = 131/322 (40%), Gaps = 7/322 (2%)

Query: 249  KSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKSRDSSSSSSSSEYEKH 308
            K+ ++ +   D      YK       + N+   +T+E    + +++  + +  + E  K 
Sbjct: 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAK-KTETGKAEEARKA 1117

Query: 309  KKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHSSSESEESSSDSDSSSSSSSSEYEKH 368
            +++ K  + A K E  +K  D+R+     K       E    + D+  +  +  +E  K 
Sbjct: 1118 EEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKK 1177

Query: 369  KKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESEDSSSDSSDGEKRKRHKKSKK 428
             ++++  +   K E ++K  D+R+     K      +E    + D+   E  K+ +++KK
Sbjct: 1178 AEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK 1237

Query: 429  KKTSDTSEEDSYKKRKKHGKKSLWVDVGLNFGLGARVLQINTSVDAQILSSSSSSEYEKH 488
                    E++ K  ++   + +           AR      + +A+       +E +K 
Sbjct: 1238 D------AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK 1291

Query: 489  KKSSKHDKHASKYENKKKKSDSGEKSRKNKKRHHSSSESEESSSDSSDEEKRKRHKKSKK 548
               +K  +   K +  KKK++  +K+ + KK+   + +  +++   ++E K+       +
Sbjct: 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351

Query: 549  KKTSDTSEEDSYKKRKKHGKKS 570
             + +    E + +K +   KK 
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKK 1373

Length = 2084

>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein; Provisional

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 57/278 (20%), Positives = 107/278 (38%), Gaps = 17/278 (6%)

Query: 174 EEKKMKQYKTNEPRSQNKHEQYSKQESSRSRRDYQERKRKDSDSEERHQTSHSTSKDKYE 233
           +           P   NK E+++   SS S             S     +  S S     
Sbjct: 99  KTPIKNNDNVTTPIKANKKEKHNLDSSSSSSISSSLTNISFFSSPTSIYSCLSNSLS--- 155

Query: 234 FRSHHREKEYKFVSHKSRSRHYSDSDSEGDDRYKQKSNKKYDSNQKHTSTQERKKYSTKS 293
                  K    V  +++S H + S S+   R K+ SNK+       T T    K     
Sbjct: 156 ------SKHSPKVIKENQSTHVNIS-SDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSP 208

Query: 294 RDSSSSSSSSEYEKHKKSSKHDKHASKYENKKKQSDSREKSRKNKKRHHS----SSESEE 349
           R++S+  +++  +  +K+ + DK+  K  +  KQ+    +  K +  H       S ++E
Sbjct: 209 RNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKE 268

Query: 350 SSSDSDSSSSSSSSEYEKHKKSSKHDKHASKYENIKKQSDSREKRRKNKKRHHSSSESED 409
           +  D  +  S   S     +KS    K +  Y N +K++ + + +    + + SS+ + D
Sbjct: 269 NKKDEKNVVSGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTGDPKNIIHRNNGSSNSNND 328

Query: 410 SSSDSSDGEKRK---RHKKSKKKKTSDTSEEDSYKKRK 444
            +S S+     +   R+  S  KK + T   ++ K  K
Sbjct: 329 DTSSSNHLGSNRISNRNPSSPYKKQTTTKHTNNTKNNK 366

Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	624
KOG4315|consensus	455		99.81
PF00467	32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	97.78
PRK05609	181	nusG transcription antitermination protein NusG; V	97.39
PRK08559	153	nusG transcription antitermination protein NusG; V	97.04
TIGR00922	172	nusG transcription termination/antitermination fac	97.03
KOG4315|consensus	455		96.97
TIGR00405	145	L26e_arch ribosomal protein L24p/L26e, archaeal. T	96.74
TIGR01955	159	RfaH transcriptional activator RfaH. This model re	96.7
COG0250	178	NusG Transcription antiterminator [Transcription]	96.41
PRK09014	162	rfaH transcriptional activator RfaH; Provisional	96.38
TIGR01956	258	NusG_myco NusG family protein. This model represen	96.23
smart00739	28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	95.85
PRK12281	76	rplX 50S ribosomal protein L24; Reviewed	95.84
CHL00141	83	rpl24 ribosomal protein L24; Validated	95.8
PRK00004	105	rplX 50S ribosomal protein L24; Reviewed	95.36
PRK01191	120	rpl24p 50S ribosomal protein L24P; Validated	95.26
TIGR01079	104	rplX_bact ribosomal protein L24, bacterial/organel	94.66
PTZ00194	143	60S ribosomal protein L26; Provisional	94.62
TIGR01080	114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	93.77
COG0198	104	RplX Ribosomal protein L24 [Translation, ribosomal	89.59
COG5164	607	SPT5 Transcription elongation factor [Transcriptio	86.79
TIGR00739	84	yajC preprotein translocase, YajC subunit. While t	86.51
PRK05886	109	yajC preprotein translocase subunit YajC; Validate	85.33
PRK06531	113	yajC preprotein translocase subunit YajC; Validate	84.85
PRK05585	106	yajC preprotein translocase subunit YajC; Validate	80.93

>KOG4315|consensus

Probab=99.81  E-value=1.7e-20  Score=192.92  Aligned_cols=171  Identities=26%  Similarity=0.394  Sum_probs=120.1

Q ss_pred             CCCCCCCCCcCCCCCCcccccCCCCCCCccccceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeec
Q psy4064           2 DVTLRPKGLGLGADKSATQITTSKSNTNPEEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVES   81 (624)
Q Consensus         2 Ep~LRPKGLGLGADrt~kq~Kp~ee~kEEEeLgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEy   81 (624)
                      +|.+||+||||||++...++.....+...+.+..+.++++.             +|+|++.++++|++|+|+..--+.++
T Consensus       183 ~~~~rpkglGLGa~~~~~~~~~~~~pek~~v~eeKke~~k~-------------~g~dd~~~g~~vr~~~g~~~~~~~ki  249 (455)
T KOG4315|consen  183 EPFLRPKGLGLGADPALKPKALLVQPEKNEVKEEKKEAYKR-------------QGFDDHAGGVAVRMAIGGKKGLFGKI  249 (455)
T ss_pred             ccccCCCCcccCCCccccccccccCcccccchhhhhhhhhh-------------cccccccCceeEEEeeccccccccee
Confidence            58899999999999988765544444445555556666554             99999999999999999999999999


Q ss_pred             eeEecChHHHhhhhcccchhhHHHHHhhhHhhhhhHH----HhhhcccCCC-------CchhhhhhhhcCCCCCcHHHHh
Q psy4064          82 LLLRVTQSEYDKNSRVINMNKYEEYKEKDAKQSNIEK----VKDKSENNHR-------GEQHEKQYSKYRNSSDSEYEEK  150 (624)
Q Consensus        82 aVRpVSkKEYDKnSKdLNksKYEEYKkkEkEk~rIEk----er~K~e~n~~-------~s~heKq~sk~rnSsDS~~~ek  150 (624)
                      .+.|||..+|..++.|||..+|++||.+..-+...++    .++.+..+.+       .+-.++.++.+.|-..+.+ +|
T Consensus       250 ~~~~~S~~~~~~~~vgin~~~y~e~kerdr~~~e~~k~~ld~rq~~ksts~r~~~~d~k~yk~k~~~~k~Dr~s~ke-ek  328 (455)
T KOG4315|consen  250 VCLPVSRKEYERVKVGINKVEYDEFKERDRLERERKKSDLDSRQPSKSTSGRDQRSDSKSYKEKHASSKQDRGSTKE-EK  328 (455)
T ss_pred             EeccCcchhhhhhhhccchhhhhhhhhhhHHHHHHhhhhhhhccccCCcCCccccccccchhhhhccccccccchhh-hh
Confidence            9999999999999999999999999954432222111    1122222222       1222233333333333333 88


Q ss_pred             hcCCccccceehhhhccCCch-HHHHHHhhhhccCCC
Q psy4064         151 KMKPYKTNELLSRVILRNSDS-EYEEKKMKQYKTNEP  186 (624)
Q Consensus       151 ~~K~W~r~eLlVRfIDrn~~~-~~~~~~~~~~~~~~~  186 (624)
                      +.++|+|.+|+|||||.+|-- +|-++||.---.--|
T Consensus       329 ~~k~wlR~dl~VR~is~d~Kgg~ly~~K~~i~dv~gp  365 (455)
T KOG4315|consen  329 NNKSWLRSDLKVRFISKDVKGGRLYEKKVRIVDVVGP  365 (455)
T ss_pred             ccchhhhcceeEEeeccccccchhhhcccceecccCC
Confidence            999999999999999999963 444566654443333

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.78  E-value=2.4e-05  Score=55.12  Aligned_cols=31  Identities=32%  Similarity=0.460  Sum_probs=29.6

Q ss_pred             eCceEEEeccCCCCcccceeeecCCCceEEE
Q psy4064          37 KNCCVKITGGMFKNNYGKLESFNEDSGRVVV   67 (624)
Q Consensus        37 KGAfVkIVSGPHKGLYGKVEGLDpDNgRVMV   67 (624)
                      +|..|+|++|||+|..|+|..+|+++.+|+|
T Consensus         1 ~Gd~V~V~~G~~~G~~G~I~~i~~~~~~V~v   31 (32)
T PF00467_consen    1 VGDTVKVISGPFKGKIGKIVEIDRSKVRVTV   31 (32)
T ss_dssp             TTSEEEESSSTTTTEEEEEEEEETTTTEEEE
T ss_pred             CCCEEEEeEcCCCCceEEEEEEECCCCEEEE
Confidence            5899999999999999999999999999987

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....

>PRK05609 nusG transcription antitermination protein NusG; Validated

Probab=97.39  E-value=0.00041  Score=62.01  Aligned_cols=48  Identities=15%  Similarity=0.252  Sum_probs=43.7

Q ss_pred             ccceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064          32 EAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV   79 (624)
Q Consensus        32 eLgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS   79 (624)
                      ...+.+|.-|.|++||++|+-|.|..+|.++.||+|.|-+-|+.+.|.
T Consensus       124 ~~~~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~r~~v~l~~~G~~~~v~  171 (181)
T PRK05609        124 KVDFEVGEMVRVIDGPFADFNGTVEEVDYEKSKLKVLVSIFGRETPVE  171 (181)
T ss_pred             ccCCCCCCEEEEeccCCCCCEEEEEEEeCCCCEEEEEEEECCCceEEE
Confidence            367889999999999999999999999999999999999999875553

>PRK08559 nusG transcription antitermination protein NusG; Validated

Probab=97.04  E-value=0.0014  Score=59.26  Aligned_cols=56  Identities=21%  Similarity=0.242  Sum_probs=50.7

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCee--EEEeeceeEecCh
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEH--VTVVESLLLRVTQ   88 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGev--VTVSEyaVRpVSk   88 (624)
                      ..+.+|..|.|++||++|.=|.|..+|++..+|.|.|.--...  |||....|+||-.
T Consensus        93 ~~~~~G~~V~I~~Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~~~pv~v~~~~~~~~~~  150 (153)
T PRK08559         93 EGIKEGDIVELIAGPFKGEKARVVRVDESKEEVTVELLEAAVPIPVTVRGDQVRVVKK  150 (153)
T ss_pred             cCCCCCCEEEEeccCCCCceEEEEEEcCCCCEEEEEEECCcceeeEEEeccEEEEecc
Confidence            5689999999999999999999999999999988888877766  9999999999853

>TIGR00922 nusG transcription termination/antitermination factor NusG

Probab=97.03  E-value=0.0011  Score=59.17  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=43.0

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV   79 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS   79 (624)
                      ..+.+|..|.|++||++|+=|.|..+|.++.||+|.|-+-|+.+.|.
T Consensus       118 ~~~~~G~~V~I~~Gpf~G~~g~v~~~~~~~~r~~V~v~~~g~~~~v~  164 (172)
T TIGR00922       118 IDFEVGEQVRVNDGPFANFTGTVEEVDYEKSKLKVSVSIFGRETPVE  164 (172)
T ss_pred             cCCCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEECCCceEEE
Confidence            55889999999999999999999999999999999999999876554

Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).

>KOG4315|consensus

Probab=96.97  E-value=0.00027  Score=74.77  Aligned_cols=68  Identities=15%  Similarity=0.063  Sum_probs=61.4

Q ss_pred             cccceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEecChHHHhhhhcccc
Q psy4064          31 EEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVIN   99 (624)
Q Consensus        31 EeLgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSkKEYDKnSKdLN   99 (624)
                      ...++.+|-+|+++.|+++|+||+|++++++ .+.++++++|-++|+++||-.+++.+.|+.++-.+..
T Consensus       225 g~dd~~~g~~vr~~~g~~~~~~~ki~~~~~S-~~~~~~~~vgin~~~y~e~kerdr~~~e~~k~~ld~r  292 (455)
T KOG4315|consen  225 GFDDHAGGVAVRMAIGGKKGLFGKIVCLPVS-RKEYERVKVGINKVEYDEFKERDRLERERKKSDLDSR  292 (455)
T ss_pred             ccccccCceeEEEeecccccccceeEeccCc-chhhhhhhhccchhhhhhhhhhhHHHHHHhhhhhhhc
Confidence            3467889999999999999999999999988 7799999999999999999999999999998665543

>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal

Probab=96.74  E-value=0.0035  Score=55.20  Aligned_cols=54  Identities=24%  Similarity=0.258  Sum_probs=50.0

Q ss_pred             ceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCee--EEEeeceeEecC
Q psy4064          34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEH--VTVVESLLLRVT   87 (624)
Q Consensus        34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGev--VTVSEyaVRpVS   87 (624)
                      .+.+|..|.|++||++|+=|.|..+|....+|.|.|..-+..  |+|....|+++.
T Consensus        86 ~~~~Gd~V~I~~GPf~G~~g~v~~~d~~k~~v~v~l~~~~~~~~v~v~~~~l~~~~  141 (145)
T TIGR00405        86 SIKKGDIVEIISGPFKGERAKVIRVDESKEEVTLELIEAAVPIPVTVKGDQVRIIQ  141 (145)
T ss_pred             ccCCCCEEEEeecCCCCCeEEEEEEcCCCCEEEEEEEEcCccceEEEeeeEEEEec
Confidence            488999999999999999999999999889999999999999  999988888775

This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.

>TIGR01955 RfaH transcriptional activator RfaH

Probab=96.70  E-value=0.0026  Score=55.95  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=41.4

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV   79 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS   79 (624)
                      ..+.+|.-|.|+.||++|+-|.|..+| ++.||.|.|.+=|+.+.|.
T Consensus       107 ~~~~~G~~V~V~~GPf~g~~g~v~~~~-~~~r~~v~l~~~gr~~~v~  152 (159)
T TIGR01955       107 TLPYKGDKVRITDGAFAGFEAIFLEPD-GEKRSMLLLNMIGKQIKVS  152 (159)
T ss_pred             cCCCCCCEEEEeccCCCCcEEEEEEEC-CCceEEEEEhhhCCceEEE
Confidence            568899999999999999999999999 6779999999999886654

This model represents the transcriptional activator protein, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes.

>COG0250 NusG Transcription antiterminator [Transcription]

Probab=96.41  E-value=0.005  Score=57.95  Aligned_cols=47  Identities=21%  Similarity=0.330  Sum_probs=44.8

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV   79 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS   79 (624)
                      ..+.+|..|.|++|||+|.=|+|+-+|++.+++.|-|.+=|+.++|.
T Consensus       122 ~~~e~Gd~VrI~~GpFa~f~g~V~evd~ek~~~~v~v~ifgr~tPVe  168 (178)
T COG0250         122 VDFEPGDVVRIIDGPFAGFKAKVEEVDEEKGKLKVEVSIFGRPTPVE  168 (178)
T ss_pred             ccCCCCCEEEEeccCCCCccEEEEEEcCcCcEEEEEEEEeCCceEEE
Confidence            68999999999999999999999999999999999999999998883

>PRK09014 rfaH transcriptional activator RfaH; Provisional

Probab=96.38  E-value=0.0043  Score=55.28  Aligned_cols=46  Identities=20%  Similarity=0.142  Sum_probs=41.6

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV   79 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS   79 (624)
                      ..+.+|.-|.|+.||++|+-|.|+.+| +..|++|.|.+-|+.+.|.
T Consensus       108 ~~~~~G~~V~I~~Gp~~g~eg~v~~~~-~~~r~~v~v~~~gr~~~v~  153 (162)
T PRK09014        108 ETPKPGDKVIITEGAFEGLQAIYTEPD-GEARSILLLNLLNKQVKHS  153 (162)
T ss_pred             cCCCCCCEEEEecCCCCCcEEEEEEeC-CCeEEEEeehhhCCcEEEE
Confidence            357899999999999999999999999 7888999999999887664

>TIGR01956 NusG_myco NusG family protein

Probab=96.23  E-value=0.0089  Score=59.98  Aligned_cols=47  Identities=26%  Similarity=0.414  Sum_probs=43.8

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV   79 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS   79 (624)
                      ..+.+|..|.|++||+.|+-|.|+.+|++..||.|.|.|-|+.+.|.
T Consensus       204 ~~f~vGd~VrI~dGPF~GfeG~I~eid~~k~Rv~VlV~IfGR~TpVe  250 (258)
T TIGR01956       204 SKFRVGNFVKIVDGPFKGIVGKIKKIDQEKKKAIVEVEILGKSVDVD  250 (258)
T ss_pred             cCCCCCCEEEEEecCCCCcEEEEEEEeCCCCEEEEEEEecCCcEEEE
Confidence            45889999999999999999999999999999999999999987764

This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif

Probab=95.85  E-value=0.0076  Score=39.54  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=24.6

Q ss_pred             eeeCceEEEeccCCCCcccceeeecCC
Q psy4064          35 LVKNCCVKITGGMFKNNYGKLESFNED   61 (624)
Q Consensus        35 LkKGAfVkIVSGPHKGLYGKVEGLDpD   61 (624)
                      +.+|..|+|+.|||.|..|.|..+|.+
T Consensus         2 ~~~G~~V~I~~G~~~g~~g~i~~i~~~   28 (28)
T smart00739        2 FEVGDTVRVIAGPFKGKVGKVLEVDGE   28 (28)
T ss_pred             CCCCCEEEEeECCCCCcEEEEEEEcCC
Confidence            568999999999999999999999753

Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.

>PRK12281 rplX 50S ribosomal protein L24; Reviewed

Probab=95.84  E-value=0.0097  Score=49.87  Aligned_cols=36  Identities=31%  Similarity=0.336  Sum_probs=34.0

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      +.|.+|.-|+|++|+++|.=|+|..+|+++.+|+|.
T Consensus         5 ~~I~kGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve   40 (76)
T PRK12281          5 LKVKKGDMVKVIAGDDKGKTGKVLAVLPKKNRVIVE   40 (76)
T ss_pred             ccccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence            578999999999999999999999999999999885

>CHL00141 rpl24 ribosomal protein L24; Validated

Probab=95.80  E-value=0.01  Score=50.39  Aligned_cols=36  Identities=28%  Similarity=0.322  Sum_probs=34.1

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      +.|.+|..|+|++|+++|.=|+|..+|.++.+|+|.
T Consensus         7 ~~I~~GD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve   42 (83)
T CHL00141          7 MHVKIGDTVKIISGSDKGKIGEVLKIIKKSNKVIVK   42 (83)
T ss_pred             CcccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence            578999999999999999999999999999999884

>PRK00004 rplX 50S ribosomal protein L24; Reviewed

Probab=95.36  E-value=0.017  Score=50.57  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=33.6

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      ..|.+|..|+|++|+++|.=|+|..+|+++.+|+|.
T Consensus         3 ~~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve   38 (105)
T PRK00004          3 MKIKKGDTVIVIAGKDKGKRGKVLKVLPKKNKVIVE   38 (105)
T ss_pred             CcccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence            358899999999999999999999999999999984

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated

Probab=95.26  E-value=0.022  Score=51.88  Aligned_cols=36  Identities=31%  Similarity=0.427  Sum_probs=34.0

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      ..|.+|..|+|++|+++|.=|+|..+|+...+|+|.
T Consensus        44 ~~IkkGD~V~VisG~~KGk~GkV~~V~~~~~~V~Ve   79 (120)
T PRK01191         44 LPVRKGDTVKVMRGDFKGEEGKVVEVDLKRGRIYVE   79 (120)
T ss_pred             ceEeCCCEEEEeecCCCCceEEEEEEEcCCCEEEEe
Confidence            578899999999999999999999999999999985

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle

Probab=94.66  E-value=0.035  Score=48.88  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=33.1

Q ss_pred             ceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      .|++|..|+|++|+++|.=|+|..+|++..+|+|.
T Consensus         3 ~ikkGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve   37 (104)
T TIGR01079         3 KIKKGDTVKVISGKDKGKRGKVLKVLPKTNKVIVE   37 (104)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEC
Confidence            57899999999999999999999999999999984

This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.

>PTZ00194 60S ribosomal protein L26; Provisional

Probab=94.62  E-value=0.041  Score=51.49  Aligned_cols=36  Identities=17%  Similarity=0.186  Sum_probs=34.0

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      ..|++|.-|+|++|+++|.=|+|..+|+..++|+|.
T Consensus        45 ~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~ViVE   80 (143)
T PTZ00194         45 MPVRKDDEVMVVRGHHKGREGKVTAVYRKKWVIHIE   80 (143)
T ss_pred             ceeecCCEEEEecCCCCCCceEEEEEEcCCCEEEEe
Confidence            568999999999999999999999999999999985

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic

Probab=93.77  E-value=0.075  Score=47.87  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=35.2

Q ss_pred             cccceeeCceEEEeccCCCCcccceeeecCCCceEEEEE
Q psy4064          31 EEAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKL   69 (624)
Q Consensus        31 EeLgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRL   69 (624)
                      +...|++|.-|+|++|+++|.=|+|..+|+...+|+|.=
T Consensus        38 r~~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~~~~~V~Veg   76 (114)
T TIGR01080        38 RALPVRKGDKVRIMRGDFKGHEGKVSKVDLKRYRIYVEG   76 (114)
T ss_pred             ccceeecCCEEEEecCCCCCCEEEEEEEEcCCCEEEEcC
Confidence            346899999999999999999999999999999988853

This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=89.59  E-value=0.43  Score=42.83  Aligned_cols=34  Identities=32%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      +-+.+|..|+|++|+++|.-|+|..++|+.  |+|.
T Consensus         3 ~~IrkGD~V~Vi~GkdKGk~GkVl~v~~k~--V~VE   36 (104)
T COG0198           3 MKVKKGDTVKVIAGKDKGKEGKVLKVLPKK--VVVE   36 (104)
T ss_pred             cceecCCEEEEEecCCCCcceEEEEEecCe--EEEE
Confidence            458899999999999999999999999998  6654

>COG5164 SPT5 Transcription elongation factor [Transcription]

Probab=86.79  E-value=0.92  Score=49.92  Aligned_cols=65  Identities=22%  Similarity=0.324  Sum_probs=51.3

Q ss_pred             eeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEecChHHHhhhhcccchhhHHHHHhh
Q psy4064          35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRVTQSEYDKNSRVINMNKYEEYKEK  109 (624)
Q Consensus        35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpVSkKEYDKnSKdLNksKYEEYKkk  109 (624)
                      ...|..|+|-.|+|+|+-|-|--+|.+++|  |.|..++++|||.-.-|-..+.+-        --.-|+|+-++
T Consensus       352 ~aigktVrIr~g~yKG~lGVVKdv~~~~ar--VeLhs~nK~VTI~K~~l~y~~reG--------e~ity~e~vnr  416 (607)
T COG5164         352 PAIGKTVRIRCGEYKGHLGVVKDVDRNIAR--VELHSNNKFVTIEKSRLAYLGREG--------EGITYDELVNR  416 (607)
T ss_pred             cccCceEEEeecccccccceeeeccCceEE--EEEecCCceEEeehhheEEecccc--------cccchhhhhhh
Confidence            345999999999999999999999988876  689999999999887776554432        11448876544

>TIGR00739 yajC preprotein translocase, YajC subunit

Probab=86.51  E-value=1  Score=38.27  Aligned_cols=45  Identities=22%  Similarity=0.398  Sum_probs=36.3

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLL   84 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVR   84 (624)
                      -.|++|.-|...+|    +||+|..+|+|.  |.|.+| .|-.++|+-.++.
T Consensus        36 ~~L~~Gd~VvT~gG----i~G~V~~i~d~~--v~vei~-~g~~i~~~r~aI~   80 (84)
T TIGR00739        36 ESLKKGDKVLTIGG----IIGTVTKIAENT--IVIELN-DNTEITFSKNAIV   80 (84)
T ss_pred             HhCCCCCEEEECCC----eEEEEEEEeCCE--EEEEEC-CCeEEEEEhHHhh
Confidence            47999999999875    899999999874  577877 4567888877764

While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.

>PRK05886 yajC preprotein translocase subunit YajC; Validated

Probab=85.33  E-value=1.6  Score=39.43  Aligned_cols=47  Identities=17%  Similarity=0.114  Sum_probs=38.9

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEec
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRV   86 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpV   86 (624)
                      -.|++|.-|...+|    +||+|..+++|  .|+|.+| .|-.++|.-.++..|
T Consensus        37 ~~Lk~GD~VvT~gG----i~G~V~~I~d~--~v~leia-~gv~i~~~r~AI~~v   83 (109)
T PRK05886         37 ESLQPGDRVHTTSG----LQATIVGITDD--TVDLEIA-PGVVTTWMKLAVRDR   83 (109)
T ss_pred             HhcCCCCEEEECCC----eEEEEEEEeCC--EEEEEEC-CCeEEEEEhhheeee
Confidence            47999999998875    89999999864  6888887 467899999988844

>PRK06531 yajC preprotein translocase subunit YajC; Validated

Probab=84.85  E-value=1.4  Score=39.81  Aligned_cols=47  Identities=21%  Similarity=0.342  Sum_probs=39.4

Q ss_pred             ceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEec
Q psy4064          34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRV   86 (624)
Q Consensus        34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpV   86 (624)
                      .|++|.-|+..+|    +||+|..+|+|+..|.|..  .|-.|+|.=.++.-|
T Consensus        36 sLk~GD~VvT~GG----i~G~V~~I~~~~~~v~le~--~gv~i~v~r~AI~~V   82 (113)
T PRK06531         36 AIQKGDEVVTIGG----LYGTVDEVDTEAKTIVLDV--DGVYLTFELAAIKRV   82 (113)
T ss_pred             hcCCCCEEEECCC----cEEEEEEEecCCCEEEEEE--CCEEEEEEhhHhhhh
Confidence            7999999998875    8999999999988888885  678888887777644

>PRK05585 yajC preprotein translocase subunit YajC; Validated

Probab=80.93  E-value=2.1  Score=38.00  Aligned_cols=47  Identities=28%  Similarity=0.384  Sum_probs=38.5

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEec
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRV   86 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpV   86 (624)
                      -.|++|.-|...+|    +||+|.++|+|  .|+|.+|=| -.|+|.-.++.-|
T Consensus        51 ~~Lk~Gd~VvT~gG----i~G~Vv~i~~~--~v~lei~~g-~~i~~~r~aI~~v   97 (106)
T PRK05585         51 SSLAKGDEVVTNGG----IIGKVTKVSED--FVIIELNDD-TEIKIQKSAIAAV   97 (106)
T ss_pred             HhcCCCCEEEECCC----eEEEEEEEeCC--EEEEEECCC-eEEEEEhHHhhhh
Confidence            48999999999875    89999999874  688888754 6888888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	624
1nz9_A	58	Transcription antitermination protein NUSG; transc	97.75
3p8b_B	152	Transcription antitermination protein NUSG; transc	97.19
2e6z_A	59	Transcription elongation factor SPT5; KOW motif, s	97.08
2jvv_A	181	Transcription antitermination protein NUSG; transc	97.0
2ckk_A	127	KIN17; beta barrel, ribosomal protein, ribonucleop	96.89
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	96.54
1m1h_A	248	Transcription antitermination protein NUSG; transc	96.02
1vq8_T	120	50S ribosomal protein L24P; ribosome 50S, protein-	95.32
3j21_U	121	50S ribosomal protein L24P; archaea, archaeal, KIN	94.92
2e70_A	71	Transcription elongation factor SPT5; KOW motif, s	94.79
2zkr_t	145	60S ribosomal protein L26; protein-RNA complex, 60	94.75
2zjr_R	115	50S ribosomal protein L24; ribosome, large ribosom	94.47
3v2d_Y	110	50S ribosomal protein L24; ribosome associated inh	94.28
3iz5_Y	150	60S ribosomal protein L26 (L24P); eukaryotic ribos	94.08
3u5e_Y	127	L33, YL33, 60S ribosomal protein L26-A; translatio	94.06
3r8s_U	102	50S ribosomal protein L24; protein biosynthesis, R	93.8
4a17_S	135	RPL26, 60S ribosomal protein L21; eukaryotic ribos	93.71
2ftc_N	96	Mitochondrial ribosomal protein L24; mitochondrial	91.84
3bbo_W	191	Ribosomal protein L24; large ribosomal subunit, sp	91.54
2do3_A	69	Transcription elongation factor SPT5; KOW motif, s	91.44
2oug_A	162	Transcriptional activator RFAH; transcription fact	88.47
3iz5_N	134	60S ribosomal protein L14 (L14E); eukaryotic ribos	81.86
3izc_N	138	60S ribosomal protein RPL14 (L14E); eukaryotic rib	80.08

>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4

Probab=97.75  E-value=3.4e-05  Score=58.31  Aligned_cols=47  Identities=19%  Similarity=0.315  Sum_probs=43.4

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV   79 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS   79 (624)
                      ..+.+|..|.|++||++|+-|.|+.+|+++.||+|.+.+=|+.++|.
T Consensus         3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~   49 (58)
T 1nz9_A            3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVE   49 (58)
T ss_dssp             CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEE
T ss_pred             cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEE
Confidence            45778999999999999999999999999999999999999887775

>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D

Probab=97.19  E-value=0.00034  Score=60.89  Aligned_cols=59  Identities=20%  Similarity=0.231  Sum_probs=51.1

Q ss_pred             ccceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCee--EEEeeceeEecChHH
Q psy4064          32 EAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEH--VTVVESLLLRVTQSE   90 (624)
Q Consensus        32 eLgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGev--VTVSEyaVRpVSkKE   90 (624)
                      ...+.+|..|.|++|||+|.=|.|+.+|++..+|.|.+.+-|+.  |+|.-.-|+++.+.+
T Consensus        89 ~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~~~~  149 (152)
T 3p8b_B           89 VSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISKLQ  149 (152)
T ss_dssp             TTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEECC-
T ss_pred             cccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEecccc
Confidence            35788999999999999999999999999999999999999984  777777777776544

>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.08  E-value=0.00033  Score=54.21  Aligned_cols=40  Identities=18%  Similarity=0.210  Sum_probs=34.8

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCe
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDE   74 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGe   74 (624)
                      ..+.+|..|.|+.||++|+-|.|+.+|++  +|+|.+.+.+.
T Consensus         6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V~v~~fg~   45 (59)
T 2e6z_A            6 SGFQPGDNVEVCEGELINLQGKILSVDGN--KITIMPKHEDL   45 (59)
T ss_dssp             SSCCTTSEEEECSSTTTTCEEEECCCBTT--EEEEEECCSSC
T ss_pred             ccCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEEEEEecCC
Confidence            45789999999999999999999999986  88888865553

>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G

Probab=97.00  E-value=0.00086  Score=59.53  Aligned_cols=47  Identities=17%  Similarity=0.258  Sum_probs=44.0

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV   79 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS   79 (624)
                      ..+.+|..|.|++||+.|+=|.|+.+|++..||.|.|-|=|+.++|.
T Consensus       126 ~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~t~ve  172 (181)
T 2jvv_A          126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVE  172 (181)
T ss_dssp             CCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             ccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEECCCCEEEE
Confidence            46789999999999999999999999999999999999999988874

>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}

Probab=96.89  E-value=0.00093  Score=58.66  Aligned_cols=43  Identities=23%  Similarity=0.340  Sum_probs=38.3

Q ss_pred             eeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeC---CeeEE
Q psy4064          35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALG---DEHVT   77 (624)
Q Consensus        35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIG---GevVT   77 (624)
                      ..+|..|+|+.|+|+|..|++.++|.+...++|+|.-|   ++.|.
T Consensus        71 P~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~  116 (127)
T 2ckk_A           71 PAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVE  116 (127)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEECSSTTTTCEEE
T ss_pred             CCCCCEEEEEecccCCcEEEEEEEeCCCcEEEEEEccCCCCCCEEE
Confidence            35599999999999999999999999999999999876   65664

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=96.54  E-value=0.0037  Score=62.48  Aligned_cols=47  Identities=19%  Similarity=0.272  Sum_probs=43.8

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV   79 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS   79 (624)
                      ..+.+|..|.|++||+.|+=|.|+.+|++..||+|.|-|=|+.++|.
T Consensus       297 ~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVe  343 (352)
T 2xhc_A          297 LGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV  343 (352)
T ss_dssp             CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             ccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEE
Confidence            46789999999999999999999999999999999999999987775

>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A

Probab=96.02  E-value=0.00084  Score=64.30  Aligned_cols=48  Identities=19%  Similarity=0.284  Sum_probs=0.0

Q ss_pred             ccceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064          32 EAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV   79 (624)
Q Consensus        32 eLgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS   79 (624)
                      .+.+.+|..|.|++||+.|.=|.|+.+|++..+|.|.+.|=|+.++|.
T Consensus       192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~v~ifgr~tpv~  239 (248)
T 1m1h_A          192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVE  239 (248)
T ss_dssp             ------------------------------------------------
T ss_pred             cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEeCCCcEEEE
Confidence            568889999999999999999999999999999999999999887664

>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...

Probab=95.32  E-value=0.01  Score=52.46  Aligned_cols=38  Identities=16%  Similarity=0.224  Sum_probs=35.4

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEe
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLA   70 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLA   70 (624)
                      +.|.+|.-|+|++|+++|.=|+|..+|+...+|+|...
T Consensus        41 ~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgv   78 (120)
T 1vq8_T           41 VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDV   78 (120)
T ss_dssp             EECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTC
T ss_pred             ccccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCe
Confidence            67889999999999999999999999999999998654

>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=94.92  E-value=0.016  Score=51.29  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=34.0

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      +.|.+|.-|+|++|+++|.-|+|..+++...+|+|.
T Consensus        44 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VE   79 (121)
T 3j21_U           44 LPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE   79 (121)
T ss_dssp             EECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEET
T ss_pred             cccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEe
Confidence            678899999999999999999999999999999985

>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.79  E-value=0.035  Score=45.65  Aligned_cols=48  Identities=25%  Similarity=0.324  Sum_probs=40.5

Q ss_pred             eCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEec
Q psy4064          37 KNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRV   86 (624)
Q Consensus        37 KGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpV   86 (624)
                      .|-.|.|..|||+|+.|.|.-..+..+||  .|--.+++|||.--.|.+|
T Consensus        20 iGktV~I~kGpyKG~~GiVkd~t~~~~RV--ELhs~~K~VtV~r~~l~~~   67 (71)
T 2e70_A           20 IGQTVRISQGPYKGYIGVVKDATESTARV--ELHSTCQTISVDRQRLTTV   67 (71)
T ss_dssp             TTSEEEECSSTTTTCEEEEEEECSSCEEE--EESSSCCEEEECTTTEEEC
T ss_pred             CCCEEEEeccCCCCeEEEEEECCCCeEEE--EecCCceEEEEEhhhcccc
Confidence            68999999999999999999998777665  5888889999987666544

>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=94.75  E-value=0.021  Score=51.96  Aligned_cols=37  Identities=16%  Similarity=0.239  Sum_probs=34.4

Q ss_pred             cceeeCceEEEeccCCCCcc-cceeeecCCCceEEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNY-GKLESFNEDSGRVVVKL   69 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLY-GKVEGLDpDNgRVMVRL   69 (624)
                      +.|.+|.-|+|++|+++|.= |+|..+|+...+|+|.-
T Consensus        47 ~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEg   84 (145)
T 2zkr_t           47 MPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIER   84 (145)
T ss_dssp             CBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETT
T ss_pred             cccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEee
Confidence            67899999999999999998 99999999999999853

>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V

Probab=94.47  E-value=0.02  Score=50.00  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      +.|.+|..|+|++|+++|.=|+|..+|+...+|+|.
T Consensus        14 m~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VE   49 (115)
T 2zjr_R           14 LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE   49 (115)
T ss_dssp             CSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred             CcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence            579999999999999999999999999999999986

>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...

Probab=94.28  E-value=0.024  Score=49.42  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      +.|++|.-|+|++|+++|.=|+|..++++..+|+|.
T Consensus         5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVE   40 (110)
T 3v2d_Y            5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE   40 (110)
T ss_dssp             CSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEET
T ss_pred             cccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEe
Confidence            568899999999999999999999999999999984

>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U

Probab=94.06  E-value=0.028  Score=50.31  Aligned_cols=36  Identities=22%  Similarity=0.139  Sum_probs=33.8

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      +-|++|.-|+|++|.++|.-|+|..+++...+|+|.
T Consensus        48 ~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE   83 (127)
T 3u5e_Y           48 LPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD   83 (127)
T ss_dssp             EECCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred             ccccCCCEEEEeecCCCCccceEEEEECCCCEEEEe
Confidence            578899999999999999999999999999999985

>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...

Probab=93.80  E-value=0.042  Score=47.29  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=31.8

Q ss_pred             ceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      .|++|.-|+|++|+++|.-|+|..++++ .+|+|.
T Consensus         3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVe   36 (102)
T 3r8s_U            3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVE   36 (102)
T ss_dssp             SSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEET
T ss_pred             CccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEe
Confidence            4789999999999999999999999999 999885

>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S

Probab=93.71  E-value=0.041  Score=49.78  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=33.5

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      +-|.+|.-|+|++|.++|.-|+|..+++...+|+|.
T Consensus        47 ~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE   82 (135)
T 4a17_S           47 MPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVE   82 (135)
T ss_dssp             EECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred             ccccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEe
Confidence            568899999999999999999999999999999873

>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N

Probab=91.84  E-value=0.13  Score=43.82  Aligned_cols=31  Identities=26%  Similarity=0.208  Sum_probs=29.2

Q ss_pred             CceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          38 NCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        38 GAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      |.-|+|++|+++|.=|+|..+++...+|+|.
T Consensus         1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVe   31 (96)
T 2ftc_N            1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVG   31 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence            6789999999999999999999999999984

>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=91.54  E-value=0.054  Score=51.41  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=32.3

Q ss_pred             eeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      |++|.-|+|++|+++|.=|+|..++++..+|+|.
T Consensus        69 IkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVE  102 (191)
T 3bbo_W           69 VKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIK  102 (191)
T ss_dssp             SCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCS
T ss_pred             eecCCEEEEeecCCCCceEEEEEEECCCCEEEEe
Confidence            7899999999999999999999999999999874

>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5

Probab=91.44  E-value=0.29  Score=40.17  Aligned_cols=50  Identities=20%  Similarity=0.207  Sum_probs=39.9

Q ss_pred             ceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEe
Q psy4064          34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLR   85 (624)
Q Consensus        34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRp   85 (624)
                      -+.+|..|+|++|.|.|-=|.|..+|+|  +|+|--=..++-|+|.-.-|+.
T Consensus        17 ~F~~GDHVkVi~G~~~getGlVV~v~~d--~v~v~SD~t~~Ei~V~~~dL~~   66 (69)
T 2do3_A           17 YFKMGDHVKVIAGRFEGDTGLIVRVEEN--FVILFSDLTMHELKVLPRDLQL   66 (69)
T ss_dssp             SCCTTCEEEESSSTTTTCEEEEEEECSS--CEEEEESSSCSEEEECTTSEEE
T ss_pred             eccCCCeEEEeccEEcCceEEEEEEeCC--EEEEEeCCCCCEEEEEhHHhhh
Confidence            5889999999999999999999999866  4566555667778876655543

>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}

Probab=88.47  E-value=0.0019  Score=56.04  Aligned_cols=43  Identities=21%  Similarity=0.208  Sum_probs=31.0

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHV   76 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevV   76 (624)
                      ..+.+|..|.|++||++|+=|.|+.+|++. ||+|.|.|=|+.+
T Consensus       108 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k-r~~V~v~ifgr~~  150 (162)
T 2oug_A          108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEI  150 (162)
T ss_dssp             -------CTTHHHHHHHHHHHHTTCSSHHH-HHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEcccCCCCcEEEEEEECCCC-EEEEEEHHhCCce
Confidence            568899999999999999999999999886 8888776655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	624
d1nz9a_	58	N-utilization substance G protein NusG, C-terminal	97.82
d1nppa2	58	N-utilization substance G protein NusG, C-terminal	97.77
d1vqot1	119	Ribosomal proteins L24 (L24p) {Archaeon Haloarcula	95.71
d2zjrr1	110	Ribosomal proteins L24 (L24p) {Deinococcus radiodu	95.03
d2j01y1	101	Ribosomal proteins L24 (L24p) {Thermus thermophilu	93.93
d2do3a1	62	Transcription elongation factor SPT5 {Human (Homo	90.79
d2gycs1	99	Ribosomal proteins L24 (L24p) {Escherichia coli [T	89.82

>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=1e-05  Score=61.16  Aligned_cols=47  Identities=19%  Similarity=0.315  Sum_probs=43.2

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEe
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVV   79 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVS   79 (624)
                      ..+.+|..|.|++||+.|+=|+|+.+|+++.||.|-|-|=|+..+|.
T Consensus         3 v~F~~Gd~V~I~~GpF~g~~g~V~~i~~~k~rv~V~v~ifGr~t~ve   49 (58)
T d1nz9a_           3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVE   49 (58)
T ss_dssp             CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEE
T ss_pred             ccccCCCEEEEeccCCCCCEEEEEEEcCCCCEEEEEEEecCCCceEe
Confidence            46789999999999999999999999999999999999999876654

>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.77  E-value=1.4e-05  Score=60.40  Aligned_cols=45  Identities=20%  Similarity=0.307  Sum_probs=41.9

Q ss_pred             ceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEE
Q psy4064          34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTV   78 (624)
Q Consensus        34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTV   78 (624)
                      .+.+|..|.|++||+.|+=|+|+.+|+++.||+|-|-+=|+..+|
T Consensus         4 df~~Gd~V~I~~GpF~g~~g~V~~i~~~~~rv~V~v~~fGr~t~v   48 (58)
T d1nppa2           4 EFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPV   48 (58)
T ss_dssp             SCCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEEEETTEEEEE
T ss_pred             cccCCCEEEEcccCCCCCEEEEEEEcCCCCEEEEEEeecCCCceE
Confidence            578999999999999999999999999999999999999988555

>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.71  E-value=0.003  Score=53.77  Aligned_cols=36  Identities=17%  Similarity=0.272  Sum_probs=34.2

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      +.|++|.-|+|++|.++|.=|+|..+|+.+++|+|.
T Consensus        40 ~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~V~Ve   75 (119)
T d1vqot1          40 VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE   75 (119)
T ss_dssp             EECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred             cceeCCCEEEEeecCCCCCcceEEEEECCCCEEEEe
Confidence            678899999999999999999999999999999984

>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.03  E-value=0.0088  Score=50.08  Aligned_cols=37  Identities=24%  Similarity=0.236  Sum_probs=34.8

Q ss_pred             ccceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          32 EAKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        32 eLgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      .+.|++|.-|+|++|+++|.=|+|..+++...+|+|.
T Consensus        10 K~kikkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVe   46 (110)
T d2zjrr1          10 KLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE   46 (110)
T ss_dssp             CCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred             eeeeeCCCEEEEeecCCCCcceEEEEEECCCCEEEEe
Confidence            4789999999999999999999999999999999985

>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Thermus thermophilus [TaxId: 274]

Probab=93.93  E-value=0.006  Score=50.43  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             cceeeCceEEEeccCCCCcccceeeecCCCceEEEE
Q psy4064          33 AKLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVK   68 (624)
Q Consensus        33 LgLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVR   68 (624)
                      +.|++|.-|+|++|+++|.=|+|..+++...||+|.
T Consensus         4 ~kIkkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVe   39 (101)
T d2j01y1           4 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE   39 (101)
T ss_dssp             CCSCCSSCEECCSSTTSSCCBSCCCCCCTTCBCCTT
T ss_pred             cEEECCCEEEEeeCCCCCCeEEEEEEECCCCEEEEE
Confidence            568899999999999999999999999999998863

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=0.18  Score=38.80  Aligned_cols=51  Identities=18%  Similarity=0.169  Sum_probs=41.1

Q ss_pred             ceeeCceEEEeccCCCCcccceeeecCCCceEEEEEeeCCeeEEEeeceeEec
Q psy4064          34 KLVKNCCVKITGGMFKNNYGKLESFNEDSGRVVVKLALGDEHVTVVESLLLRV   86 (624)
Q Consensus        34 gLkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMVRLAIGGevVTVSEyaVRpV   86 (624)
                      -+.+|..|+|++|.|.|-=|-|..++  +.+|+|---..++.|+|.-.-|+.-
T Consensus        10 ~F~~GDhVkVi~G~~~g~tGlVV~v~--~~~v~~~SD~t~~Ei~V~~~dL~~~   60 (62)
T d2do3a1          10 YFKMGDHVKVIAGRFEGDTGLIVRVE--ENFVILFSDLTMHELKVLPRDLQLC   60 (62)
T ss_dssp             SCCTTCEEEESSSTTTTCEEEEEEEC--SSCEEEEESSSCSEEEECTTSEEES
T ss_pred             ccCCCCeEEEeccEEcCccEEEEEEe--CCEEEEEeCCCCCEEEEehHHhhhh
Confidence            57889999999999999999999995  4446666667888888877666643

>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Escherichia coli [TaxId: 562]

Probab=89.82  E-value=0.084  Score=43.30  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=29.2

Q ss_pred             eeeCceEEEeccCCCCcccceeeecCCCceEEE
Q psy4064          35 LVKNCCVKITGGMFKNNYGKLESFNEDSGRVVV   67 (624)
Q Consensus        35 LkKGAfVkIVSGPHKGLYGKVEGLDpDNgRVMV   67 (624)
                      |++|.-|+|++|+.+|.=|+|..+.+. .||+|
T Consensus         2 ikkGD~V~VisGkdKGK~G~V~~V~~~-~~viV   33 (99)
T d2gycs1           2 IRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIV   33 (99)
T ss_dssp             CCTTSEEECSSSTTTTCEEEEEEECTT-SEEEE
T ss_pred             ccCCCEEEEeeCCCCCCceEEEEEECC-CeEEE
Confidence            678999999999999999999999875 68886