Psyllid ID: psy4067
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1384 | 2.2.26 [Sep-21-2011] | |||||||
| P59470 | 1133 | DNA-directed RNA polymera | yes | N/A | 0.188 | 0.230 | 0.728 | 1e-118 | |
| Q9NW08 | 1133 | DNA-directed RNA polymera | yes | N/A | 0.188 | 0.230 | 0.728 | 1e-118 | |
| P25167 | 1137 | DNA-directed RNA polymera | yes | N/A | 0.187 | 0.228 | 0.713 | 1e-114 | |
| Q10233 | 1165 | DNA-directed RNA polymera | yes | N/A | 0.188 | 0.224 | 0.573 | 3e-92 | |
| P22276 | 1149 | DNA-directed RNA polymera | yes | N/A | 0.187 | 0.225 | 0.582 | 1e-89 | |
| Q54IZ9 | 1608 | DNA-directed RNA polymera | yes | N/A | 0.184 | 0.159 | 0.595 | 5e-88 | |
| P31814 | 1122 | DNA-directed RNA polymera | N/A | N/A | 0.186 | 0.229 | 0.428 | 7e-56 | |
| O27124 | 603 | DNA-directed RNA polymera | yes | N/A | 0.188 | 0.432 | 0.401 | 1e-55 | |
| Q42877 | 1191 | DNA-directed RNA polymera | N/A | N/A | 0.181 | 0.210 | 0.411 | 1e-54 | |
| Q02061 | 1210 | DNA-directed RNA polymera | no | N/A | 0.187 | 0.214 | 0.395 | 2e-54 |
| >sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus GN=Polr3b PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust.
Identities = 193/265 (72%), Positives = 232/265 (87%), Gaps = 4/265 (1%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GL+PYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMY L Y Q+PMV++KTI + +
Sbjct: 670 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 729
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDAL++NKASLDRGFGRCLVY+N+KC LK+Y NQT D+
Sbjct: 730 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 789
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
++GP+L+A TRKP++RH LD DGI +PGE++ +QVLVNKSMPT++ + + P
Sbjct: 790 VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQP 849
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
+YK+VP++YKG+ SY+EKV++SSN+EDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV GL
Sbjct: 850 QYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 909
Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
IV QEDMPF +SGICPDIIMNPHG
Sbjct: 910 IVPQEDMPFCDSGICPDIIMNPHGF 934
|
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and RPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway. Mus musculus (taxid: 10090) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6 |
| >sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster GN=RpIII128 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium discoideum GN=polr3b PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1384 | ||||||
| 66517310 | 1134 | PREDICTED: DNA-directed RNA polymerase I | 0.188 | 0.230 | 0.739 | 1e-118 | |
| 350420099 | 1130 | PREDICTED: DNA-directed RNA polymerase I | 0.188 | 0.230 | 0.732 | 1e-117 | |
| 340720183 | 1128 | PREDICTED: DNA-directed RNA polymerase I | 0.188 | 0.231 | 0.732 | 1e-117 | |
| 380017785 | 1134 | PREDICTED: DNA-directed RNA polymerase I | 0.188 | 0.230 | 0.735 | 1e-117 | |
| 125843259 | 1130 | PREDICTED: DNA-directed RNA polymerase I | 0.187 | 0.230 | 0.731 | 1e-117 | |
| 363727935 | 1132 | PREDICTED: DNA-directed RNA polymerase I | 0.188 | 0.230 | 0.728 | 1e-117 | |
| 449481884 | 1130 | PREDICTED: DNA-directed RNA polymerase I | 0.188 | 0.230 | 0.728 | 1e-117 | |
| 326912147 | 1129 | PREDICTED: DNA-directed RNA polymerase I | 0.188 | 0.231 | 0.728 | 1e-117 | |
| 417405955 | 1133 | Putative rna polymerase i second largest | 0.188 | 0.230 | 0.732 | 1e-117 | |
| 402887513 | 1133 | PREDICTED: DNA-directed RNA polymerase I | 0.188 | 0.230 | 0.732 | 1e-117 |
| >gi|66517310|ref|XP_625037.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/265 (73%), Positives = 232/265 (87%), Gaps = 4/265 (1%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRIDTLMYNLVY Q PMV+S+TI + N
Sbjct: 671 GLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIELIN 730
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNATIAVMSYSGYDIEDALI+NKAS+DRGFGRCLVYRN+KC LK+Y NQT+DR
Sbjct: 731 FDKLPAGQNATIAVMSYSGYDIEDALILNKASIDRGFGRCLVYRNAKCTLKRYANQTYDR 790
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT----P 1088
I+GPL++A+T+K V++H +D DGI APGE + R+V+VNKS P ++ ++
Sbjct: 791 IMGPLIDANTKKSVWKHEIIDSDGIAAPGEMVENRKVMVNKSSPAANIGPVNSGNVQTQT 850
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
EYK+VPV +KG VP+Y+EKV++SSN+EDAFLIK+LLRQTRRPEIGDKFSSRHGQKGV+GL
Sbjct: 851 EYKDVPVVFKGPVPAYIEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVVGL 910
Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
IVEQEDMPFN+ GICPD+IMNPHG
Sbjct: 911 IVEQEDMPFNDYGICPDMIMNPHGF 935
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350420099|ref|XP_003492398.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|340720183|ref|XP_003398521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
| >gi|380017785|ref|XP_003692825.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Apis florea] | Back alignment and taxonomy information |
|---|
| >gi|125843259|ref|XP_690811.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2 [Danio rerio] | Back alignment and taxonomy information |
|---|
| >gi|363727935|ref|XP_416307.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Gallus gallus] | Back alignment and taxonomy information |
|---|
| >gi|449481884|ref|XP_002196633.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Taeniopygia guttata] | Back alignment and taxonomy information |
|---|
| >gi|326912147|ref|XP_003202415.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Meleagris gallopavo] | Back alignment and taxonomy information |
|---|
| >gi|417405955|gb|JAA49663.1| Putative rna polymerase i second largest subunit [Desmodus rotundus] | Back alignment and taxonomy information |
|---|
| >gi|402887513|ref|XP_003907136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Papio anubis] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1384 | ||||||
| FB|FBgn0004463 | 1137 | RpIII128 "RNA polymerase III 1 | 0.187 | 0.228 | 0.718 | 6.9e-184 | |
| UNIPROTKB|E1BRJ4 | 1132 | POLR3B "DNA-directed RNA polym | 0.187 | 0.229 | 0.731 | 1.5e-168 | |
| ZFIN|ZDB-GENE-030131-2887 | 1129 | polr3b "polymerase (RNA) III ( | 0.187 | 0.230 | 0.728 | 8e-168 | |
| UNIPROTKB|E2RHZ2 | 1133 | POLR3B "DNA-directed RNA polym | 0.187 | 0.229 | 0.731 | 1.5e-168 | |
| MGI|MGI:1917678 | 1133 | Polr3b "polymerase (RNA) III ( | 0.187 | 0.229 | 0.731 | 1.1e-168 | |
| RGD|1565311 | 1133 | Polr3b "polymerase (RNA) III ( | 0.187 | 0.229 | 0.731 | 1.1e-168 | |
| UNIPROTKB|E1BPX6 | 1133 | POLR3B "Uncharacterized protei | 0.187 | 0.229 | 0.731 | 1.5e-168 | |
| UNIPROTKB|Q9NW08 | 1133 | POLR3B "DNA-directed RNA polym | 0.187 | 0.229 | 0.731 | 1.5e-168 | |
| WB|WBGene00017300 | 1154 | rpc-2 [Caenorhabditis elegans | 0.187 | 0.225 | 0.639 | 5.7e-165 | |
| GENEDB_PFALCIPARUM|PFL0330c | 1450 | PFL0330c "DNA-directed RNA pol | 0.320 | 0.305 | 0.493 | 1.8e-163 |
| FB|FBgn0004463 RpIII128 "RNA polymerase III 128kD subunit" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1031 (368.0 bits), Expect = 6.9e-184, Sum P(3) = 6.9e-184
Identities = 189/263 (71%), Positives = 226/263 (85%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
GLVPYPHHNQ+PRNTYQCAMGKQAMG IGYNQ+NRID+LMYNLVY PMV+SKTI +TN
Sbjct: 677 GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTN 736
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F KLPAGQNAT+AVMSYSGYDIEDALI+NKAS+DRG+GRCLVY+NSKC +K+Y NQT DR
Sbjct: 737 FDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR 796
Query: 1033 ILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTI-SVSAIS--MATPE 1089
I+GP+ +A T K +++H LD DGIVAPGEQ+ +Q+++NK MP + S++ + A
Sbjct: 797 IMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856
Query: 1090 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1149
Y VP+SYKG PSY+E+V+VS+N+E+ FLIK+LLRQTR PEIGDKFSSRHGQKGV GLI
Sbjct: 857 YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 916
Query: 1150 VEQEDMPFNESGICPDIIMNPHG 1172
VEQEDMPFN+ GICPD+IMNPHG
Sbjct: 917 VEQEDMPFNDFGICPDMIMNPHG 939
|
|
| UNIPROTKB|E1BRJ4 POLR3B "DNA-directed RNA polymerase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-2887 polr3b "polymerase (RNA) III (DNA directed) polypeptide B" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RHZ2 POLR3B "DNA-directed RNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1917678 Polr3b "polymerase (RNA) III (DNA directed) polypeptide B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|1565311 Polr3b "polymerase (RNA) III (DNA directed) polypeptide B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BPX6 POLR3B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9NW08 POLR3B "DNA-directed RNA polymerase III subunit RPC2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00017300 rpc-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| GENEDB_PFALCIPARUM|PFL0330c PFL0330c "DNA-directed RNA polymerase III subunit, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.766 |
| 4th Layer | 2.7.7.6 | 0.824 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1384 | |||
| PRK07225 | 605 | PRK07225, PRK07225, DNA-directed RNA polymerase su | 1e-124 | |
| cd00653 | 866 | cd00653, RNA_pol_B_RPB2, RNA polymerase beta subun | 1e-111 | |
| pfam00562 | 373 | pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, do | 2e-99 | |
| cd00653 | 866 | cd00653, RNA_pol_B_RPB2, RNA polymerase beta subun | 2e-93 | |
| pfam00562 | 373 | pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, do | 1e-91 | |
| COG0085 | 1060 | COG0085, RpoB, DNA-directed RNA polymerase, beta s | 1e-83 | |
| TIGR03670 | 599 | TIGR03670, rpoB_arch, DNA-directed RNA polymerase | 7e-82 | |
| COG0085 | 1060 | COG0085, RpoB, DNA-directed RNA polymerase, beta s | 1e-81 | |
| PRK08565 | 1103 | PRK08565, PRK08565, DNA-directed RNA polymerase su | 3e-77 | |
| TIGR03670 | 599 | TIGR03670, rpoB_arch, DNA-directed RNA polymerase | 2e-75 | |
| PRK08565 | 1103 | PRK08565, PRK08565, DNA-directed RNA polymerase su | 1e-73 | |
| cd00653 | 866 | cd00653, RNA_pol_B_RPB2, RNA polymerase beta subun | 2e-39 | |
| TIGR02013 | 1065 | TIGR02013, rpoB, DNA-directed RNA polymerase, beta | 1e-34 | |
| cd00653 | 866 | cd00653, RNA_pol_B_RPB2, RNA polymerase beta subun | 2e-33 | |
| PRK00405 | 1112 | PRK00405, rpoB, DNA-directed RNA polymerase subuni | 2e-32 | |
| cd00653 | 866 | cd00653, RNA_pol_B_RPB2, RNA polymerase beta subun | 5e-32 | |
| TIGR03670 | 599 | TIGR03670, rpoB_arch, DNA-directed RNA polymerase | 1e-29 | |
| CHL00207 | 1077 | CHL00207, rpoB, RNA polymerase beta subunit; Provi | 1e-29 | |
| PRK08565 | 1103 | PRK08565, PRK08565, DNA-directed RNA polymerase su | 9e-29 | |
| PRK07225 | 605 | PRK07225, PRK07225, DNA-directed RNA polymerase su | 1e-28 | |
| PRK08565 | 1103 | PRK08565, PRK08565, DNA-directed RNA polymerase su | 3e-28 | |
| COG0085 | 1060 | COG0085, RpoB, DNA-directed RNA polymerase, beta s | 1e-27 | |
| COG0085 | 1060 | COG0085, RpoB, DNA-directed RNA polymerase, beta s | 4e-26 | |
| CHL00001 | 1070 | CHL00001, rpoB, RNA polymerase beta subunit | 1e-25 | |
| PRK09606 | 494 | PRK09606, PRK09606, DNA-directed RNA polymerase su | 1e-24 | |
| pfam00562 | 373 | pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, do | 4e-22 | |
| pfam04565 | 68 | pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, do | 3e-20 | |
| pfam04563 | 394 | pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta sub | 6e-17 | |
| TIGR02013 | 1065 | TIGR02013, rpoB, DNA-directed RNA polymerase, beta | 9e-17 | |
| pfam04563 | 394 | pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta sub | 1e-14 | |
| CHL00207 | 1077 | CHL00207, rpoB, RNA polymerase beta subunit; Provi | 2e-13 | |
| PRK09603 | 2890 | PRK09603, PRK09603, bifunctional DNA-directed RNA | 9e-13 | |
| CHL00001 | 1070 | CHL00001, rpoB, RNA polymerase beta subunit | 6e-12 | |
| PRK14844 | 2836 | PRK14844, PRK14844, bifunctional DNA-directed RNA | 9e-12 | |
| PRK08565 | 1103 | PRK08565, PRK08565, DNA-directed RNA polymerase su | 5e-11 | |
| COG0085 | 1060 | COG0085, RpoB, DNA-directed RNA polymerase, beta s | 2e-10 | |
| PRK09606 | 494 | PRK09606, PRK09606, DNA-directed RNA polymerase su | 2e-10 | |
| PRK00405 | 1112 | PRK00405, rpoB, DNA-directed RNA polymerase subuni | 3e-10 | |
| pfam04567 | 46 | pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, do | 2e-09 | |
| COG0085 | 1060 | COG0085, RpoB, DNA-directed RNA polymerase, beta s | 4e-09 | |
| COG0085 | 1060 | COG0085, RpoB, DNA-directed RNA polymerase, beta s | 1e-08 | |
| PRK08565 | 1103 | PRK08565, PRK08565, DNA-directed RNA polymerase su | 6e-08 | |
| cd00653 | 866 | cd00653, RNA_pol_B_RPB2, RNA polymerase beta subun | 1e-07 | |
| PRK14844 | 2836 | PRK14844, PRK14844, bifunctional DNA-directed RNA | 3e-07 | |
| PRK09603 | 2890 | PRK09603, PRK09603, bifunctional DNA-directed RNA | 1e-06 | |
| PRK14844 | 2836 | PRK14844, PRK14844, bifunctional DNA-directed RNA | 2e-06 | |
| PRK09606 | 494 | PRK09606, PRK09606, DNA-directed RNA polymerase su | 4e-06 | |
| PRK09606 | 494 | PRK09606, PRK09606, DNA-directed RNA polymerase su | 2e-05 | |
| PRK08565 | 1103 | PRK08565, PRK08565, DNA-directed RNA polymerase su | 2e-04 | |
| pfam04561 | 185 | pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, do | 3e-04 | |
| pfam04563 | 394 | pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta sub | 5e-04 | |
| CHL00207 | 1077 | CHL00207, rpoB, RNA polymerase beta subunit; Provi | 0.001 | |
| PRK00405 | 1112 | PRK00405, rpoB, DNA-directed RNA polymerase subuni | 0.003 |
| >gnl|CDD|235972 PRK07225, PRK07225, DNA-directed RNA polymerase subunit B'; Validated | Back alignment and domain information |
|---|
Score = 397 bits (1023), Expect = e-124
Identities = 189/465 (40%), Positives = 252/465 (54%), Gaps = 104/465 (22%)
Query: 913 GLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITN 972
G++PYP HN +PR T M KQ++G N + R DT + L Y Q P+V+++T I
Sbjct: 138 GMIPYPEHNASPRITMGAGMIKQSLGLPAANYKLRPDTRGHLLHYPQVPLVKTQTQEIIG 197
Query: 973 FHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTHDR 1032
F + PAGQN +AVMSY GY+IEDALIMNKAS++RG GR +R + ++YP DR
Sbjct: 198 FDERPAGQNFVVAVMSYEGYNIEDALIMNKASIERGLGRSHFFRTYEGEERRYPGGQEDR 257
Query: 1033 ILGPLLEADTR----KPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATP 1088
P + D R + YRH LD+DG+V P ++ E VL+ K+ P
Sbjct: 258 FEIP--DKDVRGYRGEEAYRH--LDEDGLVNPETEVKEGDVLIGKTSP------------ 301
Query: 1089 EYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSS---RHGQKGV 1145
P +LE+ D F I + RR +S R G++G+
Sbjct: 302 -------------PRFLEEP-------DDFGIS---PEKRRE------TSVTMRSGEEGI 332
Query: 1146 IGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSN 1205
+ ++ +TE +E S L KV V
Sbjct: 333 VDTVI----------------------------LTETEE---------GSRLVKVRV--- 352
Query: 1206 SEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGY 1265
R R PE+GDKF+SRHGQKGVIGLIV QEDMPF ESG+ PD+I+NPH
Sbjct: 353 -----------RDLRIPELGDKFASRHGQKGVIGLIVPQEDMPFTESGVVPDLIINPHAI 401
Query: 1266 PSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGIT 1325
PSRMTVG ++E++ GK G +EG +GTAF G D++E L + G+ + GK++ Y GIT
Sbjct: 402 PSRMTVGHVLEMIGGKVGSLEGRRVDGTAFSGEDEEDLREALEKLGFEHTGKEVMYDGIT 461
Query: 1326 GEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPT-GR 1369
GE +EA I+ G +YYQKL HMV +K+HARSRGP VLTRQPT GR
Sbjct: 462 GEKIEAEIFVGVIYYQKLHHMVANKLHARSRGPVQVLTRQPTEGR 506
|
Length = 605 |
| >gnl|CDD|238353 cd00653, RNA_pol_B_RPB2, RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|215994 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6 | Back alignment and domain information |
|---|
| >gnl|CDD|238353 cd00653, RNA_pol_B_RPB2, RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|215994 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6 | Back alignment and domain information |
|---|
| >gnl|CDD|223163 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|132709 TIGR03670, rpoB_arch, DNA-directed RNA polymerase subunit B | Back alignment and domain information |
|---|
| >gnl|CDD|223163 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|236291 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|132709 TIGR03670, rpoB_arch, DNA-directed RNA polymerase subunit B | Back alignment and domain information |
|---|
| >gnl|CDD|236291 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238353 cd00653, RNA_pol_B_RPB2, RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|233685 TIGR02013, rpoB, DNA-directed RNA polymerase, beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|238353 cd00653, RNA_pol_B_RPB2, RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|234749 PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|238353 cd00653, RNA_pol_B_RPB2, RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|132709 TIGR03670, rpoB_arch, DNA-directed RNA polymerase subunit B | Back alignment and domain information |
|---|
| >gnl|CDD|214397 CHL00207, rpoB, RNA polymerase beta subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236291 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235972 PRK07225, PRK07225, DNA-directed RNA polymerase subunit B'; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|236291 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223163 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|223163 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|214330 CHL00001, rpoB, RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|236587 PRK09606, PRK09606, DNA-directed RNA polymerase subunit B''; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|215994 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6 | Back alignment and domain information |
|---|
| >gnl|CDD|146955 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain 3 | Back alignment and domain information |
|---|
| >gnl|CDD|191028 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|233685 TIGR02013, rpoB, DNA-directed RNA polymerase, beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|191028 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|214397 CHL00207, rpoB, RNA polymerase beta subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|214330 CHL00001, rpoB, RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236291 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223163 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|236587 PRK09606, PRK09606, DNA-directed RNA polymerase subunit B''; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|234749 PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|191029 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain 5 | Back alignment and domain information |
|---|
| >gnl|CDD|223163 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|223163 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|236291 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238353 cd00653, RNA_pol_B_RPB2, RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236587 PRK09606, PRK09606, DNA-directed RNA polymerase subunit B''; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|236587 PRK09606, PRK09606, DNA-directed RNA polymerase subunit B''; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|236291 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218151 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain 2 | Back alignment and domain information |
|---|
| >gnl|CDD|191028 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|214397 CHL00207, rpoB, RNA polymerase beta subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234749 PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1384 | |||
| KOG0214|consensus | 1141 | 100.0 | ||
| KOG0215|consensus | 1153 | 100.0 | ||
| PRK08565 | 1103 | DNA-directed RNA polymerase subunit B; Provisional | 100.0 | |
| COG0085 | 1060 | RpoB DNA-directed RNA polymerase, beta subunit/140 | 100.0 | |
| TIGR02013 | 1065 | rpoB DNA-directed RNA polymerase, beta subunit. Th | 100.0 | |
| PRK00405 | 1112 | rpoB DNA-directed RNA polymerase subunit beta; Rev | 100.0 | |
| CHL00001 | 1070 | rpoB RNA polymerase beta subunit | 100.0 | |
| cd00653 | 866 | RNA_pol_B_RPB2 RNA polymerase beta subunit. RNA po | 100.0 | |
| KOG0216|consensus | 1111 | 100.0 | ||
| CHL00207 | 1077 | rpoB RNA polymerase beta subunit; Provisional | 100.0 | |
| PRK07225 | 605 | DNA-directed RNA polymerase subunit B'; Validated | 100.0 | |
| TIGR03670 | 599 | rpoB_arch DNA-directed RNA polymerase subunit B. T | 100.0 | |
| PRK09603 | 2890 | bifunctional DNA-directed RNA polymerase subunit b | 100.0 | |
| PRK14844 | 2836 | bifunctional DNA-directed RNA polymerase subunit b | 100.0 | |
| PF00562 | 386 | RNA_pol_Rpb2_6: RNA polymerase Rpb2, domain 6; Int | 100.0 | |
| TIGR02013 | 1065 | rpoB DNA-directed RNA polymerase, beta subunit. Th | 100.0 | |
| CHL00001 | 1070 | rpoB RNA polymerase beta subunit | 100.0 | |
| KOG0214|consensus | 1141 | 100.0 | ||
| PRK08565 | 1103 | DNA-directed RNA polymerase subunit B; Provisional | 100.0 | |
| KOG0215|consensus | 1153 | 100.0 | ||
| CHL00207 | 1077 | rpoB RNA polymerase beta subunit; Provisional | 100.0 | |
| COG0085 | 1060 | RpoB DNA-directed RNA polymerase, beta subunit/140 | 100.0 | |
| cd00653 | 866 | RNA_pol_B_RPB2 RNA polymerase beta subunit. RNA po | 100.0 | |
| KOG0216|consensus | 1111 | 100.0 | ||
| PRK14844 | 2836 | bifunctional DNA-directed RNA polymerase subunit b | 100.0 | |
| PRK09603 | 2890 | bifunctional DNA-directed RNA polymerase subunit b | 100.0 | |
| PRK09606 | 494 | DNA-directed RNA polymerase subunit B''; Validated | 100.0 | |
| PF00562 | 386 | RNA_pol_Rpb2_6: RNA polymerase Rpb2, domain 6; Int | 100.0 | |
| PRK00405 | 1112 | rpoB DNA-directed RNA polymerase subunit beta; Rev | 100.0 | |
| PRK09606 | 494 | DNA-directed RNA polymerase subunit B''; Validated | 100.0 | |
| PRK07225 | 605 | DNA-directed RNA polymerase subunit B'; Validated | 99.93 | |
| TIGR03670 | 599 | rpoB_arch DNA-directed RNA polymerase subunit B. T | 99.92 | |
| PF04565 | 68 | RNA_pol_Rpb2_3: RNA polymerase Rpb2, domain 3; Int | 99.91 | |
| PF04563 | 203 | RNA_pol_Rpb2_1: RNA polymerase beta subunit; Inter | 99.7 | |
| PF04567 | 48 | RNA_pol_Rpb2_5: RNA polymerase Rpb2, domain 5; Int | 98.79 | |
| PF04561 | 190 | RNA_pol_Rpb2_2: RNA polymerase Rpb2, domain 2; Int | 98.66 | |
| PF04561 | 190 | RNA_pol_Rpb2_2: RNA polymerase Rpb2, domain 2; Int | 98.59 | |
| PF04566 | 63 | RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; Int | 96.93 | |
| PHA03394 | 865 | lef-8 DNA-directed RNA polymerase subunit beta-lik | 92.79 | |
| PF04565 | 68 | RNA_pol_Rpb2_3: RNA polymerase Rpb2, domain 3; Int | 92.32 |
| >KOG0214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-194 Score=1713.46 Aligned_cols=775 Identities=37% Similarity=0.604 Sum_probs=691.6
Q ss_pred cceeeEeccchhe-----eccccccccchHHHHhhhccccc-----------------cceeccccccccccccccccee
Q psy4067 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTYQKR-----------------LYRLTVQPNWLGTVKAVHGTYL 96 (1384)
Q Consensus 39 ~~~~~~~~~~~~~-----~~~~~~~~~sd~~~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~ 96 (1384)
|+.|+++|||||| ||||||||||||||||||||||+ ||+|++||||||.|+|++|
T Consensus 223 gq~i~~tlpyikqeIPI~ilfrALG~v~dreILehIcYd~~D~em~e~lkpsieeafviq~qn~ALdfig~rga~~G--- 299 (1141)
T KOG0214|consen 223 GQEIIATLPYIKQEIPILILFRALGFVSDREILEHICYDFDDAEMFESLKPSIEEAFVIQEQNVALDFIGQRGACIG--- 299 (1141)
T ss_pred CceEEEEeeeecccCcEEEEehhhcCCccHHHHHhhcCCCCcHHHHHHhhhhhhhhhhhhhhHHHHHHHHhcCCCCC---
Confidence 8999999999999 99999999999999999999984 9999999999999999999
Q ss_pred eeeccccccCCCCHHHHHHHHHHHHHHHhcCccccccCh-------hhHHHHHHHHHHHHHhcCcCC-CCChhhhhhHHh
Q psy4067 97 TMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDS-------FDYFINVEIKKLMQANANIYS-DVDPLFYLKYLD 168 (1384)
Q Consensus 97 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~kgl~~~hi~~-------~~~f~~~~i~~~~~~~~~~~~-d~~d~f~~k~~d 168 (1384)
+++| +++.+++|+.+|. ++|||+. ++||+|||||+++.+.++++. |++|||++||+|
T Consensus 300 --vtke-kri~yakdiLqKe------------~lPhi~~~e~~etkKA~fLGYmi~rlll~aLgRr~~ddRDHfG~KRLD 364 (1141)
T KOG0214|consen 300 --VTKE-KRIKYAKEILQKE------------LLPHVGLGEICETKKAYFLGYMVHRLLLAALGRRELDDRDHFGNKRLD 364 (1141)
T ss_pred --CCcc-hhhHHHHHHHHHH------------hccccccchhhhhhHHHHHHhhHHHHHHHHcCCCCccchhhccccchh
Confidence 9999 8999999999999 9999876 689999999999999998776 899999999999
Q ss_pred hhhcchh-------------------hhcccccccccccccccchhhHHHHHHHHHHhCCcc-cccccccccceeeeecc
Q psy4067 169 IHVGIAD-------------------KIIPKIKAAQFDIVNHMRQDTITNALTAAIQTGNWT-IRRFKMERQGVTQVLSR 228 (1384)
Q Consensus 169 ~~~~~~~-------------------k~~~~~~~~~~~~~~~~~~~~IT~~l~~alsTGNW~-~~~~~~~r~GvsQvL~R 228 (1384)
+++..+. |+++. +..|||.-++++++||+|++||||||||+ .++.++.|+||||||+|
T Consensus 365 laGpLLa~lfR~lf~~l~rd~~~~mQk~le~--~~dfni~~aika~iIt~gl~yslaTgnwgdq~ka~~~ragVsQVLnR 442 (1141)
T KOG0214|consen 365 LAGPLLAKLFRSLFAKLLRDVTRYMQKCLEN--GVDFNIELAIKAKIITNGLNYALATGNWGDQKKAMQGRAGVSQVLNR 442 (1141)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccceEEEEEEeeeecccceeeeccCCccchhHHhhccccHHHHhcc
Confidence 9985433 33332 57899999999999999999999999998 77789999999999999
Q ss_pred cchhhcccccccccccccccccccCCCcCCCCCcccccCCCCCCCccccchhhcccccccccCCChHHHHHHHHHcCcee
Q psy4067 229 LSYISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEH 308 (1384)
Q Consensus 229 ln~ls~lshlrRv~s~~~~~~K~~~pR~LhpsqwG~iCP~eTPEG~~cGLVKnLAl~a~It~~~~~~~i~~~l~~lG~~~ 308 (1384)
+||+|+||||||+|+|+.+++|+++|||||||||||+||+|||||++|||||||||||+||+|++++||+++|++|||++
T Consensus 443 ~t~~sTLsHlRR~n~Pigr~GKlAkpRqlHnthwGmvCPaeTPEGqacGLVKNLSLmayIsvGS~~sPi~EfLeewgmE~ 522 (1141)
T KOG0214|consen 443 LNPLSTLSHLRRTNSPIGRTGKLAKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMAYISVGSLESPIVEFLEEWGMEN 522 (1141)
T ss_pred ccHHHHHHHHhhcCCccccccccCCccccCcccceeeccccCCCcceeeccccceEEEEEecCCCccHHHHHHHHhchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccCCCCeEEEEECCEEEEEeecCcccCCcccccccccccccCCcccccccccccceEEEEEEEeeCCceeeee
Q psy4067 309 IAMFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRS 388 (1384)
Q Consensus 309 ~~~~~~~~~~~~~~~~VflNG~~vG~~~~~i~ig~Psv~e~~~~~R~i~P~EcRlrd~TYsa~i~V~v~~~~~~~~~~~~ 388 (1384)
|+++++..+ +..+|||+||+|+|+|++|..+ .+.++..| ++
T Consensus 523 le~~~ps~~--~datkvfvNG~wvGlhrdp~~l-----~~tlr~lR--------------------------------R~ 563 (1141)
T KOG0214|consen 523 LEEISPSPS--PDATKVFVNGVWVGLHRDPEEL-----VATLKRLR--------------------------------RQ 563 (1141)
T ss_pred HhhcCCCcC--CCceEEEEcccEEEecCCHHHH-----HHHHHHHH--------------------------------Hh
Confidence 999887554 5789999999999999999988 76666666 22
Q ss_pred eeeeccccceeccccccccCCcccccccceeeeeEEEeccccccchhhhHHhhccccccccCCChhhHHHHhhhcccccc
Q psy4067 389 DLVIGRMPIMLQSSKCVLRNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHI 468 (1384)
Q Consensus 389 ~V~IG~iPIMLrS~~CvL~g~~~~is~~~~~s~t~i~~~~~~~~P~~e~~~~~~~~~~~~~~~~~~ea~e~L~~~~LpHv 468 (1384)
--.+-+.- |+|
T Consensus 564 ~di~~Evs-~vR-------------------------------------------------------------------- 574 (1141)
T KOG0214|consen 564 FDIIAEVS-MVR-------------------------------------------------------------------- 574 (1141)
T ss_pred hccchhhh-hhc--------------------------------------------------------------------
Confidence 11000000 000
Q ss_pred ccccccchhhhHHHHHHHHHHHHhhcCCCCCCCCccccCcEeeehhhHHHHHHHHHHHHHHHHHHhhccccceeccccce
Q psy4067 469 PVINMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWW 548 (1384)
Q Consensus 469 ~v~~~~~~~Ka~yLg~MvRr~l~~~~~~~~~DDrD~ygNKRlelAG~Lls~lFe~~fk~~~~~~k~~~~~~i~sl~~g~w 548 (1384)
++
T Consensus 575 --------------------------------------------------------------DI---------------- 576 (1141)
T KOG0214|consen 575 --------------------------------------------------------------DI---------------- 576 (1141)
T ss_pred --------------------------------------------------------------cc----------------
Confidence 00
Q ss_pred eecccCceeEeecCcccccccCCCCCCCcccccCCCCCeEEEecccccCCcchhhhHHHhhcccccccccccceeeccCC
Q psy4067 549 FELKYGNKIYIRSPSRKLLAAGFSGPHSGRVRLMPEGPTILLNSCLRSGGKAQHEALYNAVQRHATKCCTLNFLFFLGGG 628 (1384)
Q Consensus 549 ~~~~~~n~~~i~t~~r~~~a~Gvh~sh~GRicp~pEgp~i~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~fl~~g 628 (1384)
.-+++.|.|| +||+| ||+++++ +.+. .++.+|+
T Consensus 577 ----r~kE~ri~tD-------------aGR~~----rPLlive-----n~~l-------~~~k~hi-------------- 609 (1141)
T KOG0214|consen 577 ----RDKEIRIFTD-------------AGRSL----RPLLIVE-----NAKL-------LIKKRHI-------------- 609 (1141)
T ss_pred ----cccceeeeec-------------cCccc----cceEEEe-----chhh-------hhhhHHH--------------
Confidence 0134888999 99999 9999994 4444 5556666
Q ss_pred CCcccccccccceeeeEeeeccccccccccccccccCCCCCCCCCCCCCcccccccccccccccccccccCcEEEeccCC
Q psy4067 629 GILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCDCPDGYSSGCQPRPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNE 708 (1384)
Q Consensus 629 ~i~~~~~~~~~~~l~~v~v~~~~~l~~~~r~~r~~~d~~~~~~~gr~~rPl~~~~~~~~~~~~~~~~~~~~~~e~~~~~e 708 (1384)
+.|++. .+..++|..++..|.+||||++|
T Consensus 610 ----------------------~~L~~~-----------------------------~~~~~~w~~lv~~G~ie~idtee 638 (1141)
T KOG0214|consen 610 ----------------------RALKQS-----------------------------KPNEYRWAHLLSSGEVEYIDTEE 638 (1141)
T ss_pred ----------------------HHHhhC-----------------------------chhhcchhhhccccceeeeccch
Confidence 445440 12568999999999999999999
Q ss_pred CcceEEEeCCCCCCC----ccceeecccCcccccccchhhhhhcccccCCCCCCCCCCCCCCccchhhhhhccccccccc
Q psy4067 709 GNDSHIAVSESGIRP----GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIG 784 (1384)
Q Consensus 709 ~~~~~ia~~~~~~~~----~~~th~ei~p~~~l~v~a~~~~~~~~~~~~~~~lipf~~hNqspRn~yq~~m~kQ~~g~~~ 784 (1384)
|++++||++++++.. ..||||||||++||||||+ .||||||||||||+||++|+|||||
T Consensus 639 EEtvmiam~~~dL~~~~~~~~~THCEiHpsmILgv~as--------------iIpFpdh~qspr~tYQsa~~kqamg--- 701 (1141)
T KOG0214|consen 639 EETVMIAMGPKDLAESAYPKTYTHCEIHPSMILGVCAS--------------IIPFPDHNQSPRNTYQSAMGKQAMG--- 701 (1141)
T ss_pred hhhHHHhcCHHHHhhccCCcccccccccHHHhhhhcee--------------eeecCCCCCchHHHHHHHHhhhcce---
Confidence 999999999998864 4799999999999999999 6666666666666666666666555
Q ss_pred cccccccccceeeeccCCCceeeccccccccCCCCCCCccccCCCCccchhhcccccceeEEeecccceeeecccccccc
Q psy4067 785 YNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKIISFSISVAVFDSVWLGDV 864 (1384)
Q Consensus 785 ~~~~~R~D~~~~~l~~pQ~Piv~t~~~~~~~~~~~p~G~n~~~~~g~e~~~~~~~~~~vva~~~~~~~~~~~~~~~~~~~ 864 (1384)
T Consensus 702 -------------------------------------------------------------------------------- 701 (1141)
T KOG0214|consen 702 -------------------------------------------------------------------------------- 701 (1141)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccchhhcccccccccchhhhhhhccccceeeccccCCCCccccCCCCCCCccchhhhcccccccceeeecc
Q psy4067 865 KQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRRLLCWECVLYNKRFHSPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQ 944 (1384)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~k~s~s~glIPF~~HNqSPRntyq~~M~KQAiG~~~yN~ 944 (1384)
++.+|+
T Consensus 702 --------------------------------------------------------------------------~y~tn~ 707 (1141)
T KOG0214|consen 702 --------------------------------------------------------------------------VYHTNP 707 (1141)
T ss_pred --------------------------------------------------------------------------eeeecc
Confidence 456788
Q ss_pred ccceeeeeeeeeccCCceeeeeeEeecccCCCCCCcceEEEEeeecccccccceeecccccccCCceeeEEecceeeeee
Q psy4067 945 QNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQ 1024 (1384)
Q Consensus 945 ~~RiDt~~~~L~ypQkPLV~T~~i~~~~~~elp~GqN~iVAvmsy~GYN~EDAIIiNkssidRG~~rs~~yr~~~~~i~~ 1024 (1384)
..|+|++.|.++|||+|+++|+.+++..+.++|+|+|++||++||+|||||||+|||++++|||+|||++||+|+..+..
T Consensus 708 ~vR~dtl~~~l~ypqkpl~tt~~~e~l~~~eL~aG~NaiVAi~~~~GYNqEDsvimn~s~v~rg~FrS~~~RsYk~q~~~ 787 (1141)
T KOG0214|consen 708 QVRMDTLAKVLYYPQKPLVTTRAMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSVDRGLFRSFFIRSYKDQEHK 787 (1141)
T ss_pred hhhhhhhhhcccccccchhhHHHHhhhhhhhcccccceEEEEecccCccHHHHHHHHhhhhhcchhhhhhhhHHHhhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cCCCccceeeCCccccCCCCCcccccccCCCCcccCCceeecCceEEeeeccCccccccccCCCcccccccccccccccc
Q psy4067 1025 YPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPEYKEVPVSYKGSVPSY 1104 (1384)
Q Consensus 1025 ~~~~~~d~i~~p~~~~~~~~p~~~~~~LDedGiv~~G~~V~~gDILIgKvsp~~~~~~~~~~~~e~k~~~~~~k~~~p~~ 1104 (1384)
...+.++.+..|......++.+..|++||+||++.+|++|..+||+|||++|..+.+. ...
T Consensus 788 ~~~~~ee~~~~~~~~~~~~mr~~~~dkLdddG~i~~G~~vs~~Dv~iGk~t~~~~~~~--~~~----------------- 848 (1141)
T KOG0214|consen 788 KDQGPEEIFEEPPRGEGRGMRNGKYDKLDDDGIIMPGSRVSGGDVLIGKTTPQPAKED--ESG----------------- 848 (1141)
T ss_pred cccccccccccccccccccccccccccccccCCccccceeecCCEEeccccCCcccch--hcc-----------------
Confidence 8888888888887766677788889999999999999999999999999998654320 000
Q ss_pred ceEEEEecCcchhhhHHHhhhccccccccccccccCCCcceeeeEeecCCCCCCCCCCcCceeeCCCCCCCcccccceee
Q psy4067 1105 LEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHGLKGCDRITEYKE 1184 (1384)
Q Consensus 1105 vd~Vii~~~~~~~~~vki~irq~R~p~IGDKfssRHGqKGVis~ilp~eDMPfte~Gi~pDIIiNP~gvpsr~~i~~~~e 1184 (1384)
...+....+|
T Consensus 849 ----------------------------------------------------------------------~~~~~~t~~d 858 (1141)
T KOG0214|consen 849 ----------------------------------------------------------------------PEDRLYTKRD 858 (1141)
T ss_pred ----------------------------------------------------------------------cccccccccc
Confidence 0012224578
Q ss_pred ecccccCCccceeeEEEEecCCCCcEEEEEEEEeecCCCcCCcccccCCCceeEEEEeecCCCCCCCCCCcceEeeCCCC
Q psy4067 1185 VPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDIIMNPHG 1264 (1384)
Q Consensus 1185 ~s~~~k~~e~~~vd~V~i~~~~~~~~~vkV~ir~~R~p~iGDKfsSRHGQKGvvg~i~~qeDMPft~dGi~PDIIiNPhg 1264 (1384)
.++.++.+|.|+||+|+++.|.+|.+++||++|+.|.|++|||||||||||||||++++|||||||.+|++|||||||||
T Consensus 859 ~s~~Lr~~e~Givd~V~vt~n~~G~kF~kv~vr~~ripqiGDKfasrHgqKG~ig~~~~qedmpft~eGi~pDiiiNPha 938 (1141)
T KOG0214|consen 859 HSTKLRHTERGIVDQVWVTKNSEGPKFVKVRVRQVRIPQIGDKFASRHGQKGTIGITYRQEDMPFTIEGIVPDIIINPHA 938 (1141)
T ss_pred ceeecccCCcceEEEEEEecCCCCCceeEEEEeecccccccchhccccccCccccceeecCCCCccccCCCcceEECccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhHHhhhhHHHhhcCCeeeeccCCCCCHHHHHHHHHHcCCCCCCceEEeeCCCCcEEEeeEeEeeehhhccc
Q psy4067 1265 YPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLK 1344 (1384)
Q Consensus 1265 ~PSRMTIGql~E~l~Gk~~~~~g~~~d~t~F~~~~~~~i~~~L~~~G~~~~Gke~lydG~TGe~l~~~IfiGp~YYqRLk 1344 (1384)
||||||||||+||++||++++.|...|+|||++..+..|+..|.++||++.|+|+||||+||++|.++||+||+|||||+
T Consensus 939 iPSRmtig~liEc~lgk~~a~~~e~~~atpFs~v~v~~is~~l~~~g~~~~G~e~~ynGrtG~~~~~~if~GptyyqrL~ 1018 (1141)
T KOG0214|consen 939 IPSRMTIGQLIECLLGKVAAYEGEEGDATPFSDVTVSKISANLHVYGYQYRGNERMYNGRTGRKLRAQIFIGPTYYQRLK 1018 (1141)
T ss_pred CccccchhhhHHHhhhhhhhcccccccCCCCCccchhcccchHHHhccccCCCEEEecCCCCceeeeeeecCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccceeeccCCccccccCCCccccccCCCc
Q psy4067 1345 HMVQDKIHARSRGPRVVLTRQPTGRRWKLTFTP 1377 (1384)
Q Consensus 1345 HMV~DKiHaRsrGP~~~LTrQP~eGRsr~~~~~ 1377 (1384)
|||+||||+|+|||+|+|||||++||||.||+-
T Consensus 1019 Hmvd~kih~R~~Gp~q~ltRQP~~gRsr~GGlR 1051 (1141)
T KOG0214|consen 1019 HMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 1051 (1141)
T ss_pred HhhhheeeecccCCceeeeccccccccccCCee
Confidence 999999999999999999999999999999984
|
|
| >KOG0215|consensus | Back alignment and domain information |
|---|
| >PRK08565 DNA-directed RNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >COG0085 RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] | Back alignment and domain information |
|---|
| >TIGR02013 rpoB DNA-directed RNA polymerase, beta subunit | Back alignment and domain information |
|---|
| >PRK00405 rpoB DNA-directed RNA polymerase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >CHL00001 rpoB RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >cd00653 RNA_pol_B_RPB2 RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >KOG0216|consensus | Back alignment and domain information |
|---|
| >CHL00207 rpoB RNA polymerase beta subunit; Provisional | Back alignment and domain information |
|---|
| >PRK07225 DNA-directed RNA polymerase subunit B'; Validated | Back alignment and domain information |
|---|
| >TIGR03670 rpoB_arch DNA-directed RNA polymerase subunit B | Back alignment and domain information |
|---|
| >PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed | Back alignment and domain information |
|---|
| >PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional | Back alignment and domain information |
|---|
| >PF00562 RNA_pol_Rpb2_6: RNA polymerase Rpb2, domain 6; InterPro: IPR007120 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
| >TIGR02013 rpoB DNA-directed RNA polymerase, beta subunit | Back alignment and domain information |
|---|
| >CHL00001 rpoB RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >KOG0214|consensus | Back alignment and domain information |
|---|
| >PRK08565 DNA-directed RNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >KOG0215|consensus | Back alignment and domain information |
|---|
| >CHL00207 rpoB RNA polymerase beta subunit; Provisional | Back alignment and domain information |
|---|
| >COG0085 RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] | Back alignment and domain information |
|---|
| >cd00653 RNA_pol_B_RPB2 RNA polymerase beta subunit | Back alignment and domain information |
|---|
| >KOG0216|consensus | Back alignment and domain information |
|---|
| >PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional | Back alignment and domain information |
|---|
| >PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed | Back alignment and domain information |
|---|
| >PRK09606 DNA-directed RNA polymerase subunit B''; Validated | Back alignment and domain information |
|---|
| >PF00562 RNA_pol_Rpb2_6: RNA polymerase Rpb2, domain 6; InterPro: IPR007120 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
| >PRK00405 rpoB DNA-directed RNA polymerase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >PRK09606 DNA-directed RNA polymerase subunit B''; Validated | Back alignment and domain information |
|---|
| >PRK07225 DNA-directed RNA polymerase subunit B'; Validated | Back alignment and domain information |
|---|
| >TIGR03670 rpoB_arch DNA-directed RNA polymerase subunit B | Back alignment and domain information |
|---|
| >PF04565 RNA_pol_Rpb2_3: RNA polymerase Rpb2, domain 3; InterPro: IPR007645 RNA polymerases catalyse the DNA dependent polymerisation of RNA | Back alignment and domain information |
|---|
| >PF04563 RNA_pol_Rpb2_1: RNA polymerase beta subunit; InterPro: IPR007644 RNA polymerases catalyse the DNA dependent polymerisation of RNA | Back alignment and domain information |
|---|
| >PF04567 RNA_pol_Rpb2_5: RNA polymerase Rpb2, domain 5; InterPro: IPR007647 RNA polymerases catalyse the DNA dependent polymerisation of RNA | Back alignment and domain information |
|---|
| >PF04561 RNA_pol_Rpb2_2: RNA polymerase Rpb2, domain 2; InterPro: IPR007642 RNA polymerases catalyse the DNA-dependent polymerisation of RNA | Back alignment and domain information |
|---|
| >PF04561 RNA_pol_Rpb2_2: RNA polymerase Rpb2, domain 2; InterPro: IPR007642 RNA polymerases catalyse the DNA-dependent polymerisation of RNA | Back alignment and domain information |
|---|
| >PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA | Back alignment and domain information |
|---|
| >PHA03394 lef-8 DNA-directed RNA polymerase subunit beta-like protein; Provisional | Back alignment and domain information |
|---|
| >PF04565 RNA_pol_Rpb2_3: RNA polymerase Rpb2, domain 3; InterPro: IPR007645 RNA polymerases catalyse the DNA dependent polymerisation of RNA | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1384 | ||||
| 3h0g_B | 1210 | Rna Polymerase Ii From Schizosaccharomyces Pombe Le | 1e-55 | ||
| 3h0g_B | 1210 | Rna Polymerase Ii From Schizosaccharomyces Pombe Le | 5e-45 | ||
| 2pmz_B | 1124 | Archaeal Rna Polymerase From Sulfolobus Solfataricu | 6e-54 | ||
| 2pmz_B | 1124 | Archaeal Rna Polymerase From Sulfolobus Solfataricu | 2e-46 | ||
| 1i3q_B | 1224 | Rna Polymerase Ii Crystal Form I At 3.1 A Resolutio | 2e-53 | ||
| 1i3q_B | 1224 | Rna Polymerase Ii Crystal Form I At 3.1 A Resolutio | 3e-46 | ||
| 2waq_B | 1131 | The Complete Structure Of The Archaeal 13-Subunit D | 4e-53 | ||
| 2waq_B | 1131 | The Complete Structure Of The Archaeal 13-Subunit D | 5e-46 | ||
| 1iw7_C | 1119 | Crystal Structure Of The Rna Polymerase Holoenzyme | 1e-23 | ||
| 1i6v_C | 1118 | Thermus Aquaticus Core Rna Polymerase-Rifampicin Co | 1e-22 | ||
| 1hqm_C | 1119 | Crystal Structure Of Thermus Aquaticus Core Rna Pol | 1e-22 | ||
| 1l9u_C | 1118 | Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A | 1e-22 | ||
| 1ynj_C | 1119 | Taq Rna Polymerase-Sorangicin Complex Length = 1119 | 2e-22 | ||
| 3lu0_C | 1342 | Molecular Model Of Escherichia Coli Core Rna Polyme | 3e-17 | ||
| 3iyd_C | 1342 | Three-Dimensional Em Structure Of An Intact Activat | 3e-17 |
| >pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1210 | Back alignment and structure |
|
| >pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1210 | Back alignment and structure |
| >pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 1124 | Back alignment and structure |
| >pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 1124 | Back alignment and structure |
| >pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution Length = 1224 | Back alignment and structure |
| >pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution Length = 1224 | Back alignment and structure |
| >pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna- Directed Rna Polymerase Length = 1131 | Back alignment and structure |
| >pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna- Directed Rna Polymerase Length = 1131 | Back alignment and structure |
| >pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119 | Back alignment and structure |
| >pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex Length = 1118 | Back alignment and structure |
| >pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase- Includes Complete Structure With Side-Chains (Except For Disordered Regions)-Further Refined From Original Deposition-Contains Additional Sequence Information Length = 1119 | Back alignment and structure |
| >pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1118 | Back alignment and structure |
| >pdb|1YNJ|C Chain C, Taq Rna Polymerase-Sorangicin Complex Length = 1119 | Back alignment and structure |
| >pdb|3LU0|C Chain C, Molecular Model Of Escherichia Coli Core Rna Polymerase Length = 1342 | Back alignment and structure |
| >pdb|3IYD|C Chain C, Three-Dimensional Em Structure Of An Intact Activator-Dependent Transcription Initiation Complex Length = 1342 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B Length = 1131 | Back alignment and structure |
|---|
Score = 342 bits (878), Expect = 7e-99
Identities = 102/265 (38%), Positives = 160/265 (60%), Gaps = 2/265 (0%)
Query: 911 SPGLVPYPHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRI 970
+ ++PYP HNQ+PRNTYQ AM KQA+G N Q R DT + L Y QRP+V+++ + I
Sbjct: 654 TASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDI 713
Query: 971 TNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDRGFGRCLVYRNSKCVLKQYPNQTH 1030
+ PAG NA +AV+S++GY++ED++IMN++S++RG R +R +YP
Sbjct: 714 IGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQE 773
Query: 1031 DRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMATPE- 1089
D+I+ P K +R L+ +G+V+P ++ VL+ K P + +PE
Sbjct: 774 DKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQ 833
Query: 1090 -YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1148
++ + + ++ VL++ +E L+K+ +R R P IGDKF+SRHGQKGVIG+
Sbjct: 834 AKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRHGQKGVIGM 893
Query: 1149 IVEQEDMPFNESGICPDIIMNPHGL 1173
++ Q DMP+ G+ PD+I+NPH L
Sbjct: 894 LIPQVDMPYTVKGVVPDVILNPHAL 918
|
| >4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B Length = 1131 | Back alignment and structure |
|---|
| >4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B Length = 1131 | Back alignment and structure |
|---|
| >4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B Length = 1131 | Back alignment and structure |
|---|
| >4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B Length = 1131 | Back alignment and structure |
|---|
| >4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B Length = 1131 | Back alignment and structure |
|---|
| >4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B Length = 1131 | Back alignment and structure |
|---|
| >3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1210 | Back alignment and structure |
|---|
| >3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1210 | Back alignment and structure |
|---|
| >3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1210 | Back alignment and structure |
|---|
| >3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1210 | Back alignment and structure |
|---|
| >3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1210 | Back alignment and structure |
|---|
| >3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1210 | Back alignment and structure |
|---|
| >3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1210 | Back alignment and structure |
|---|
| >1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ... Length = 1224 | Back alignment and structure |
|---|
| >1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ... Length = 1224 | Back alignment and structure |
|---|
| >1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ... Length = 1224 | Back alignment and structure |
|---|
| >1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ... Length = 1224 | Back alignment and structure |
|---|
| >1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ... Length = 1224 | Back alignment and structure |
|---|
| >1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ... Length = 1224 | Back alignment and structure |
|---|
| >1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ... Length = 1224 | Back alignment and structure |
|---|
| >2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ... Length = 1119 | Back alignment and structure |
|---|
| >2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ... Length = 1119 | Back alignment and structure |
|---|
| >3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C* Length = 1342 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1384 | |||
| 3h0g_B | 1210 | DNA-directed RNA polymerase II subunit RPB2; trans | 100.0 | |
| 1twf_B | 1224 | DNA-directed RNA polymerase II 140 kDa polypeptid; | 100.0 | |
| 4ayb_B | 1131 | DNA-directed RNA polymerase; transferase, multi-su | 100.0 | |
| 2a6h_C | 1119 | DNA-directed RNA polymerase beta chain; RNA polyme | 100.0 | |
| 3lu0_C | 1342 | DNA-directed RNA polymerase subunit beta; E. coli | 100.0 | |
| 3h0g_B | 1210 | DNA-directed RNA polymerase II subunit RPB2; trans | 100.0 | |
| 2a6h_C | 1119 | DNA-directed RNA polymerase beta chain; RNA polyme | 100.0 | |
| 1twf_B | 1224 | DNA-directed RNA polymerase II 140 kDa polypeptid; | 100.0 | |
| 4ayb_B | 1131 | DNA-directed RNA polymerase; transferase, multi-su | 100.0 | |
| 3lu0_C | 1342 | DNA-directed RNA polymerase subunit beta; E. coli | 100.0 | |
| 3mlq_A | 188 | DNA-directed RNA polymerase subunit beta; tudor, t | 99.38 | |
| 3tbi_B | 228 | DNA-directed RNA polymerase subunit beta; transcri | 98.75 |
| >3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-191 Score=1818.09 Aligned_cols=789 Identities=33% Similarity=0.572 Sum_probs=671.2
Q ss_pred cceeeEeccchhe-----eccccccccchHHHHhhhccccc-----------------cceeccccccccccccccccee
Q psy4067 39 GLQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTYQKR-----------------LYRLTVQPNWLGTVKAVHGTYL 96 (1384)
Q Consensus 39 ~~~~~~~~~~~~~-----~~~~~~~~~sd~~~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~ 96 (1384)
|..+.+.+||+++ |+|||||++||+||++||+||.+ +++|++||+|||+|....|
T Consensus 252 ~~~i~~~~~~~~~~IPi~ivlkALg~~sD~EI~~~I~~~~~d~~~~~~l~~slee~~~i~tq~~aL~yIG~r~~~~~--- 328 (1210)
T 3h0g_B 252 GQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQDKDIALDYIGKRGSTTG--- 328 (1210)
T ss_dssp SCCCCCCCTTSCSCCCSHHHHTTTTCCSTTHHHHHHCCSSCCHHHHHTHHHHHHTTSSCCSSHHHHHTTCCCSSSCC---
T ss_pred CceEEEEEeccccCCcHHHHHHHcCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhccccC---
Confidence 7788999999998 99999999999999999998763 6899999999999986556
Q ss_pred eeeccccccCCCCHHHHHHHHHHHHHHHhcCccccccCh-------hhHHHHHHHHHHHHHhcCcCC-CCChhhhhhHHh
Q psy4067 97 TMVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDS-------FDYFINVEIKKLMQANANIYS-DVDPLFYLKYLD 168 (1384)
Q Consensus 97 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~kgl~~~hi~~-------~~~f~~~~i~~~~~~~~~~~~-d~~d~f~~k~~d 168 (1384)
+.+|. +++.+.++.++. ++|||+. |.+||++|+++++++..+... |++|||.+||++
T Consensus 329 --~~~~~-~~~~a~~iL~~~------------lLpHl~~~~~~~~~Ka~fL~~MvrkLl~~~~G~~~~Dd~D~~~nkrl~ 393 (1210)
T 3h0g_B 329 --VTREK-RLRYAHDILQKE------------LLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLD 393 (1210)
T ss_dssp --CCHHH-HHHHHHHHHTTT------------SSCSSCCSSSCCSSHHHHHHHHHHHHHHHHTTSSCCCCTTCSSSCCBC
T ss_pred --CCchh-HHHHHHHHHHhh------------EEeCcCCCccchhHHHHHHHHHHHHHHHHhCCCCCCCCCccccCeEEe
Confidence 44552 333333333333 9999975 789999999999999887655 888999999999
Q ss_pred hhhcchh-----------h----hccc--ccccccccccccchhhHHHHHHHHHHhCCcc-cccccccccceeeeecccc
Q psy4067 169 IHVGIAD-----------K----IIPK--IKAAQFDIVNHMRQDTITNALTAAIQTGNWT-IRRFKMERQGVTQVLSRLS 230 (1384)
Q Consensus 169 ~~~~~~~-----------k----~~~~--~~~~~~~~~~~~~~~~IT~~l~~alsTGNW~-~~~~~~~r~GvsQvL~Rln 230 (1384)
++|..+. | .+.+ .+...||+..+++++.||++|+||||||||+ .+++.++|+||||||+|+|
T Consensus 394 l~G~Ll~~lfr~~~~~~~~~i~~~l~k~~~~~~~~~~~~~i~~~~It~~l~~~laTGNW~~~kk~~~~~sGvsqvl~R~n 473 (1210)
T 3h0g_B 394 LAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYT 473 (1210)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCCTTSSCSTTTSHHHHHHHSSSCSSTTSSCCSCCCCSCCBCCCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHhcchhhhHHHHHHHhhcCCcccccccccCcCCEEEEcccCC
Confidence 9985332 1 1111 1245789999999999999999999999997 6678899999999999999
Q ss_pred hhhcccccccccccccccccccCCCcCCCCCcccccCCCCCCCccccchhhcccccccccCCChHHHHHHHHHcCceecc
Q psy4067 231 YISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIA 310 (1384)
Q Consensus 231 ~ls~lshlrRv~s~~~~~~K~~~pR~LhpsqwG~iCP~eTPEG~~cGLVKnLAl~a~It~~~~~~~i~~~l~~lG~~~~~ 310 (1384)
|+|+||||||+|+|+++++|+++||+||||||||+||+|||||++||||||||+||+||++++++||.++|.++||++++
T Consensus 474 ~~s~lShlRrv~~p~~~~~K~~~~R~Lhpt~WG~iCP~eTPEG~~cGLvknLal~~~Isvg~~~~pI~~~l~~~gme~le 553 (1210)
T 3h0g_B 474 FASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLE 553 (1210)
T ss_dssp HHHHHHHTTBBCCSCCSSCCSSSSSSCCGGGTTTCCCSCCCSSSSTTTSCBCCSSCCBCCCCCSSHHHHHHHSSSCCCCS
T ss_pred HHHHHHHHHhccCchhhccccccccccChhhheeeccccCCCCCcccccccccceeeeECCCCcHHHHHHHHHhCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCCeEEEEECCEEEEEeecCcccCCcccccccccccccCCcccccccccccceEEEEEEEeeCCceeeeeee
Q psy4067 311 MFNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDL 390 (1384)
Q Consensus 311 ~~~~~~~~~~~~~~VflNG~~vG~~~~~i~ig~Psv~e~~~~~R~i~P~EcRlrd~TYsa~i~V~v~~~~~~~~~~~~~V 390 (1384)
++.+.. .+++++|||||+|||+|++|..+ .+.++.+| ++
T Consensus 554 ~~~~~~--~~~~tkVfvNG~wVGvh~dp~~L-----v~~lR~lR--------------------------------R~-- 592 (1210)
T 3h0g_B 554 DYNPSA--SPNATKVFVNGVWLGVHRDPAHL-----TETLRSLR--------------------------------RR-- 592 (1210)
T ss_dssp CCCSSS--SSSSCCCCSTTCCCCCCSCHHHH-----HHHHHHHH--------------------------------TT--
T ss_pred hcCccc--CCCceEEEECCEEEEEeCCHHHH-----HHHHHHHh--------------------------------hc--
Confidence 876643 36789999999999999999888 77777776 22
Q ss_pred eeccccceeccccccccCCcccccccceeeeeEEEeccccccchhhhHHhhccccccccCCChhhHHHHhhhcccccccc
Q psy4067 391 VIGRMPIMLQSSKCVLRNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPV 470 (1384)
Q Consensus 391 ~IG~iPIMLrS~~CvL~g~~~~is~~~~~s~t~i~~~~~~~~P~~e~~~~~~~~~~~~~~~~~~ea~e~L~~~~LpHv~v 470 (1384)
|.||- ++| ++.+.
T Consensus 593 --g~Is~--------------eVS--------Ivrdi------------------------------------------- 605 (1210)
T 3h0g_B 593 --LDISA--------------EVS--------IVRDI------------------------------------------- 605 (1210)
T ss_dssp --TSSCT--------------TCC--------CCCCT-------------------------------------------
T ss_pred --CCCCC--------------ceE--------EEecC-------------------------------------------
Confidence 11221 111 00000
Q ss_pred ccccchhhhHHHHHHHHHHHHhhcCCCCCCCCccccCcEeeehhhHHHHHHHHHHHHHHHHHHhhccccceeccccceee
Q psy4067 471 INMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFE 550 (1384)
Q Consensus 471 ~~~~~~~Ka~yLg~MvRr~l~~~~~~~~~DDrD~ygNKRlelAG~Lls~lFe~~fk~~~~~~k~~~~~~i~sl~~g~w~~ 550 (1384)
T Consensus 606 -------------------------------------------------------------------------------- 605 (1210)
T 3h0g_B 606 -------------------------------------------------------------------------------- 605 (1210)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCceeEeecCcccccccCCCCCCCcccccCCCCCeEEEeccccc--CCcchhhhHHHhhcccccccccccceeeccCC
Q psy4067 551 LKYGNKIYIRSPSRKLLAAGFSGPHSGRVRLMPEGPTILLNSCLRS--GGKAQHEALYNAVQRHATKCCTLNFLFFLGGG 628 (1384)
Q Consensus 551 ~~~~n~~~i~t~~r~~~a~Gvh~sh~GRicp~pEgp~i~~~~~~~~--~~~~~~~~~~~~lk~~~~~~~~~~~~~fl~~g 628 (1384)
..++++|.|| +||+| ||+++|.....+ .|++ .++++|+
T Consensus 606 --r~rE~~IfTD-------------aGRv~----RPLfvVen~~~~~~~g~L-------~l~k~hi-------------- 645 (1210)
T 3h0g_B 606 --REKELRLFTD-------------AGRIC----RPLFIVDNNPNSERRGEL-------CIRKEHI-------------- 645 (1210)
T ss_dssp --TTCCCCCCCS-------------SCCBC----CEEEECCCSSCSSSSCCC-------SSCHHHH--------------
T ss_pred --CCCeEEEecC-------------CCccc----ceEEEEccCCcccccccc-------cccHHHH--------------
Confidence 0123889999 99999 999998421111 1233 3444444
Q ss_pred CCcccccccccceeeeEeeeccccccccccccccccCCCCCCCCCCCCCcccccccccccccccccccccCcEEEeccCC
Q psy4067 629 GILPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCDCPDGYSSGCQPRPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNE 708 (1384)
Q Consensus 629 ~i~~~~~~~~~~~l~~v~v~~~~~l~~~~r~~r~~~d~~~~~~~gr~~rPl~~~~~~~~~~~~~~~~~~~~~~e~~~~~e 708 (1384)
+.|+.... .+ . ......+.|++|+.+|.|||||++|
T Consensus 646 ----------------------~~L~~~~~-----~~------~-----------~~~~~~~~w~~Lv~~GvIEylDaeE 681 (1210)
T 3h0g_B 646 ----------------------QQLIEDKD-----RY------D-----------IDPEQRFGWTALVSSGLIEYLDAEE 681 (1210)
T ss_dssp ----------------------HHHHHHHT-----CC------C-----------SCTTCCCSSTTTTTTTSEEECCTTT
T ss_pred ----------------------HHHhcccc-----cc------c-----------ccccccCCHHHHHhCCCEEEecHhh
Confidence 33322000 00 0 0001347899999999999999999
Q ss_pred CcceEEEeCCCCCCC----------------------------ccceeecccCcccccccchhhhhhcccccCCCCCCCC
Q psy4067 709 GNDSHIAVSESGIRP----------------------------GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPY 760 (1384)
Q Consensus 709 ~~~~~ia~~~~~~~~----------------------------~~~th~ei~p~~~l~v~a~~~~~~~~~~~~~~~lipf 760 (1384)
|++++||++++++.. ..||||||+|++||||||| +|||
T Consensus 682 Eet~mIamtpeDL~~~r~~~~g~~~~~~~d~~~r~k~~~~~~~~~~THcEIhPsmILGIcAS--------------iIPF 747 (1210)
T 3h0g_B 682 EETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHVHAWTHCEIHPAMILGILAS--------------IIPF 747 (1210)
T ss_dssp GGGCCEESCHHHHHHHHHHTTCCCCCCSSCCSSCCCCCSCCSCCSCSEECSCGGGSSCSSST--------------TSSS
T ss_pred hhceeEEecHHHhhhhhhhhccccccccccchhhccccCCCcccccccccccchhhhhheee--------------cccC
Confidence 999999999877631 3689999999999999999 9999
Q ss_pred CCCCCCccchhhhhhccccccccccccccccccceeeeccCCCceeeccccccccCCCCCCCccccCCCCccchhhcccc
Q psy4067 761 PHHNQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESC 840 (1384)
Q Consensus 761 ~~hNqspRn~yq~~m~kQ~~g~~~~~~~~R~D~~~~~l~~pQ~Piv~t~~~~~~~~~~~p~G~n~~~~~g~e~~~~~~~~ 840 (1384)
|||||||||||||||+|||||+|++||++|+||++|+|+|||+|||+|++++.++
T Consensus 748 pdHNQSPRNtYQ~aMgKQamG~~~~n~~~R~Dt~~~~L~yPQkPlv~T~~~e~~~------------------------- 802 (1210)
T 3h0g_B 748 PDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLK------------------------- 802 (1210)
T ss_dssp STTSCSHHHHHHHHHHTTCCSCCCTTTTTSCCSSEEEESSCBCCSSBCTTSTTTT-------------------------
T ss_pred ccccccchhhhhhhhhcccccccccccccccCccccEeecCcCccccchhHHHhC-------------------------
Confidence 9999999999999999999999999999999999999999999999996666654
Q ss_pred cceeEEeecccceeeecccccccccccccccccccchhhcccccccccchhhhhhhccccceeeccccCCCCccccCCCC
Q psy4067 841 HEVLKIISFSISVAVFDSVWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRRLLCWECVLYNKRFHSPGLVPYPHH 920 (1384)
Q Consensus 841 ~~vva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~k~s~s~glIPF~~H 920 (1384)
T Consensus 803 -------------------------------------------------------------------------------- 802 (1210)
T 3h0g_B 803 -------------------------------------------------------------------------------- 802 (1210)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccchhhhcccccccceeeeccccceeeeeeeeeccCCceeeeeeEeecccCCCCCCcceEEEEeeecccccccceee
Q psy4067 921 NQAPRNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIM 1000 (1384)
Q Consensus 921 NqSPRntyq~~M~KQAiG~~~yN~~~RiDt~~~~L~ypQkPLV~T~~i~~~~~~elp~GqN~iVAvmsy~GYN~EDAIIi 1000 (1384)
++++|+|+|++||||||+||||||||||
T Consensus 803 ----------------------------------------------------~~elp~G~NaiVAvmsy~GYn~EDAiIi 830 (1210)
T 3h0g_B 803 ----------------------------------------------------FRELPAGQNAIVAILCYSGYNQEDSIIM 830 (1210)
T ss_dssp ----------------------------------------------------CTTSCSCCEECBEECCCSSSSCSSCEEE
T ss_pred ----------------------------------------------------CCcccCccceEEEEeccCCCChhhheee
Confidence 4456677788899999999999999999
Q ss_pred cccccccCCceeeEEecceeeeeecCCCccceeeCCccccCCCCCcccccccCCCCcccCCceeecCceEEeeeccCccc
Q psy4067 1001 NKASLDRGFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISV 1080 (1384)
Q Consensus 1001 NkssidRG~~rs~~yr~~~~~i~~~~~~~~d~i~~p~~~~~~~~p~~~~~~LDedGiv~~G~~V~~gDILIgKvsp~~~~ 1080 (1384)
||+|+|||||||++|++|.++++++..+..|.+..|..+...+.+...|++||+||||.+|++|++|||||||++|..+.
T Consensus 831 nk~sv~rg~~~s~~~~~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~LD~dGi~~~G~~v~~gDiligK~~p~~~~ 910 (1210)
T 3h0g_B 831 NQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLD 910 (1210)
T ss_dssp EHHHHTTTTTCEEEEEEEEECCCCCSSSCCCCCCCCCTTSCCSCCSCCGGGCCTTSSCCTTCCCCTTCCCCCCCCCC---
T ss_pred ehhheecCceEEEEEEEEEEEeeecCCCceeEEcCCCcchhcccchhhHhhcCCCCCcCCCCEecCCCEEEEEecCCCCC
Confidence 99999999999999999999999988877888888875543344455799999999999999999999999999996532
Q ss_pred cccccCCCccccccccccccccccceEEEEecCcchhhhHHHhhhccccccccccccccCCCcceeeeEeecCCCCCCCC
Q psy4067 1081 SAISMATPEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNES 1160 (1384)
Q Consensus 1081 ~~~~~~~~e~k~~~~~~k~~~p~~vd~Vii~~~~~~~~~vki~irq~R~p~IGDKfssRHGqKGVis~ilp~eDMPfte~ 1160 (1384)
. .+ .|
T Consensus 911 ~---------~~---------------------------------------~~--------------------------- 915 (1210)
T 3h0g_B 911 H---------EE---------------------------------------LG--------------------------- 915 (1210)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c---------hh---------------------------------------hc---------------------------
Confidence 1 00 00
Q ss_pred CCcCceeeCCCCCCCcccccceeeecccccCCccceeeEEEEecCCCCcEEEEEEEEeecCCCcCCcccccCCCceeEEE
Q psy4067 1161 GICPDIIMNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGL 1240 (1384)
Q Consensus 1161 Gi~pDIIiNP~gvpsr~~i~~~~e~s~~~k~~e~~~vd~V~i~~~~~~~~~vkV~ir~~R~p~iGDKfsSRHGQKGvvg~ 1240 (1384)
.+.+...++|+|+.+++.|.|+||+|+++.++++.++|||++|++|+|++|||||||||||||||+
T Consensus 916 --------------~~~~~~~~rd~s~~~~~~e~g~Vd~V~~~~~~~g~~~vkv~~~~~R~~~~GDK~a~RhGqKGvi~~ 981 (1210)
T 3h0g_B 916 --------------QRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGM 981 (1210)
T ss_dssp -----------------CCCCCCCCCCCCCTTCCCCCCEEEEEECSSSSEEEEEEECCCBCCCTTCEEECTTCCCEEEEE
T ss_pred --------------ccccccccceeeEEecCCCCeEEEEEEEEEecCCCeEEEEEEEEecCCCchhhhhcccCCCceeeE
Confidence 001123468899999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCCCCcceEeeCCCCCCCccchhhhHHhhhhHHHhhcCCeeeeccCCCCCHHHHHHHHHHcCCCCCCceEE
Q psy4067 1241 IVEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIF 1320 (1384)
Q Consensus 1241 i~~qeDMPft~dGi~PDIIiNPhg~PSRMTIGql~E~l~Gk~~~~~g~~~d~t~F~~~~~~~i~~~L~~~G~~~~Gke~l 1320 (1384)
|+|+|||||++||++|||||||||||||||||||+|+++||++++.|.+.|+|||++.+++++++.|.++||+++|+|.|
T Consensus 982 i~~~edmPf~~~G~~pDii~NP~~~PSRMtigq~~E~~~g~~~~~~g~~~~~tpF~~~~~~~~~~~l~~~g~~~~G~~~l 1061 (1210)
T 3h0g_B 982 TYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVM 1061 (1210)
T ss_dssp EECTTTSCCBTTTBCCSEECCGGGSTTSCCHHHHHHHHHHHHSSSSCCCCBCCSSCSCCHHHHHHHHHTTTSCTTSCBCC
T ss_pred EeccccCCcCCCCCCCeEEECCCcCCCCccchhhhHhHHHHHHHhcCCceeeccCCCCcHHHHHHHHHHcCcCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCcEEEeeEeEeeehhhccccccCccceeeccCCccccccCCCccccccCCCc
Q psy4067 1321 YSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWKLTFTP 1377 (1384)
Q Consensus 1321 ydG~TGe~l~~~IfiGp~YYqRLkHMV~DKiHaRsrGP~~~LTrQP~eGRsr~~~~~ 1377 (1384)
|||+|||+|+++||+||+|||||+|||+|||||||+|||+.|||||++||||.|||-
T Consensus 1062 ~~g~tg~~~~~~i~~G~~yy~kL~Hmv~dK~h~r~~gp~~~~t~QP~~gr~~~GG~r 1118 (1210)
T 3h0g_B 1062 YHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLR 1118 (1210)
T ss_dssp BCSSSCCBCSSCBEECCEECEECSCCSTTTCEECSSCCBCSSSCSBCCSSTTCCCCC
T ss_pred EcCCCCCCccccEEEEehHhhcchhhcccCcEEeccCCCchhccCCcccccccCCee
Confidence 999999999999999999999999999999999999999999999999999999984
|
| >1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ... | Back alignment and structure |
|---|
| >4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B | Back alignment and structure |
|---|
| >2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ... | Back alignment and structure |
|---|
| >3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C* | Back alignment and structure |
|---|
| >3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ... | Back alignment and structure |
|---|
| >1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ... | Back alignment and structure |
|---|
| >4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B | Back alignment and structure |
|---|
| >3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C* | Back alignment and structure |
|---|
| >3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus} | Back alignment and structure |
|---|
| >3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory protein, transcription; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1384 | ||||
| d1twfb_ | 1207 | e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces c | 9e-73 | |
| d1twfb_ | 1207 | e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces c | 5e-50 | |
| d1twfb_ | 1207 | e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces c | 5e-19 | |
| d1twfb_ | 1207 | e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces c | 9e-17 | |
| d1twfb_ | 1207 | e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces c | 1e-12 | |
| d1twfb_ | 1207 | e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces c | 1e-10 | |
| d1twfb_ | 1207 | e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces c | 3e-05 | |
| d1smyc_ | 1119 | e.29.1.1 (C:) RNA-polymerase beta {Thermus thermop | 8e-58 | |
| d1smyc_ | 1119 | e.29.1.1 (C:) RNA-polymerase beta {Thermus thermop | 1e-13 | |
| d1smyc_ | 1119 | e.29.1.1 (C:) RNA-polymerase beta {Thermus thermop | 6e-10 |
| >d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 1207 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta and beta-prime subunits of DNA dependent RNA-polymerase superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase family: RNA-polymerase beta domain: RBP2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 264 bits (674), Expect = 9e-73
Identities = 86/189 (45%), Positives = 121/189 (64%)
Query: 1182 YKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLI 1241
++ + + +++VLV++N + +K+ +R T+ P+IGDKF+SRHGQKG IG+
Sbjct: 917 KRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGIT 976
Query: 1242 VEQEDMPFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLV 1301
+EDMPF GI PD+I+NPH PSRMTV LIE L K + GN + + F +
Sbjct: 977 YRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVE 1036
Query: 1302 DVQEELIRHGYNYQGKDIFYSGITGEALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVV 1361
+ + L HGY +G ++ Y+G TG+ L A I+ GP YYQ+L+HMV DKIHAR+RGP V
Sbjct: 1037 GISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQV 1096
Query: 1362 LTRQPTGRR 1370
LTRQP R
Sbjct: 1097 LTRQPVEGR 1105
|
| >d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 1207 | Back information, alignment and structure |
|---|
| >d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 1207 | Back information, alignment and structure |
|---|
| >d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 1207 | Back information, alignment and structure |
|---|
| >d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 1207 | Back information, alignment and structure |
|---|
| >d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 1207 | Back information, alignment and structure |
|---|
| >d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 1207 | Back information, alignment and structure |
|---|
| >d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus [TaxId: 274]} Length = 1119 | Back information, alignment and structure |
|---|
| >d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus [TaxId: 274]} Length = 1119 | Back information, alignment and structure |
|---|
| >d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus [TaxId: 274]} Length = 1119 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1384 | |||
| d1twfb_ | 1207 | RBP2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 100.0 | |
| d1smyc_ | 1119 | RNA-polymerase beta {Thermus thermophilus [TaxId: | 100.0 | |
| d1smyc_ | 1119 | RNA-polymerase beta {Thermus thermophilus [TaxId: | 100.0 | |
| d1twfb_ | 1207 | RBP2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 100.0 |
| >d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta and beta-prime subunits of DNA dependent RNA-polymerase superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase family: RNA-polymerase beta domain: RBP2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-160 Score=1568.03 Aligned_cols=791 Identities=34% Similarity=0.572 Sum_probs=614.0
Q ss_pred ceeeEeccchhe-----eccccccccchHHHHhhhccccc-----------------cceecccccccccccccccceee
Q psy4067 40 LQAILFLPLFKQ-----VDFGDSKVVSLRELLSHVTYQKR-----------------LYRLTVQPNWLGTVKAVHGTYLT 97 (1384)
Q Consensus 40 ~~~~~~~~~~~~-----~~~~~~~~~sd~~~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~ 97 (1384)
..+.+.+||+++ ++|||||++||+||+++|++|.. +++++.||+|||.+....+
T Consensus 250 ~~i~~~~~~~~~~IPl~illrALG~~sD~eI~~~i~~~~~~~~~~~~l~~~~~~~~~~~t~e~al~yig~~~~~~~---- 325 (1207)
T d1twfb_ 250 RTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALG---- 325 (1207)
T ss_dssp CCEEEECTTCSSCEEHHHHHHHTTCCSHHHHHHHHCCCTTCHHHHHHHHHHHHHTTTCCSHHHHHHHHHHTTSCTT----
T ss_pred eEEEEEeehhcccchHHHHHHHhCCcchhhhhhhcccCchhhHHHHHHHHHHhhccchhhHHHHHHHHHhhccccC----
Confidence 356789999988 89999999999999999999873 6789999999998754333
Q ss_pred eeccccccCCCCHHHHHHHHHHHHHHHhcCccccccCh-------hhHHHHHHHHHHHHHhcCcCC-CCChhhhhhHHhh
Q psy4067 98 MVTDETSKLKDSPEIRDKWKLVLSFLKEKGLVKPHIDS-------FDYFINVEIKKLMQANANIYS-DVDPLFYLKYLDI 169 (1384)
Q Consensus 98 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~kgl~~~hi~~-------~~~f~~~~i~~~~~~~~~~~~-d~~d~f~~k~~d~ 169 (1384)
...+ .++ ......| .+- ++||++. +.+|+++|+++++.+..+... |++|||.+||+++
T Consensus 326 -~~~~-~~~----------~~~~~iL-~~~-llpHl~~~~~~~~~K~~~L~~mi~kll~~~~g~~~~dd~D~~~nkrv~~ 391 (1207)
T d1twfb_ 326 -IKKE-KRI----------QYAKDIL-QKE-FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDL 391 (1207)
T ss_dssp -SCHH-HHH----------HHHHHHH-HHT-SSTTTCCSSSCHHHHHHHHHHHHHHHHHHHTTSSCCCCTTCGGGEEEEC
T ss_pred -CCcc-chH----------HHHHHHH-Hhh-hccccccccchhhhHHHHHHHHHHHHHHhhhcccCCcchhhhccchhhh
Confidence 2222 111 1112222 222 8899964 579999999999999887665 8889999999999
Q ss_pred hhcchhhh---------------ccc--ccccccccccccchhhHHHHHHHHHHhCCccccc-ccccccceeeeecccch
Q psy4067 170 HVGIADKI---------------IPK--IKAAQFDIVNHMRQDTITNALTAAIQTGNWTIRR-FKMERQGVTQVLSRLSY 231 (1384)
Q Consensus 170 ~~~~~~k~---------------~~~--~~~~~~~~~~~~~~~~IT~~l~~alsTGNW~~~~-~~~~r~GvsQvL~Rln~ 231 (1384)
.|...+.. +.+ .....+++...++++.||++|++||+||||..+. ..++++||||+|+|+||
T Consensus 392 ~G~Ll~~~fr~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~it~~i~~~~~TGn~~~~~~~~~~~~G~sq~l~r~n~ 471 (1207)
T d1twfb_ 392 AGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTY 471 (1207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCC--------CCCCTHHHHHHHHHHHHHCCCC---------CCCEEECCCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccChhhhhccCcHHHHHHHHHhcCcccccccccccccchhhhhhhcCH
Confidence 88533311 111 1234577888889999999999999999998654 45789999999999999
Q ss_pred hhcccccccccccccccccccCCCcCCCCCcccccCCCCCCCccccchhhcccccccccCCChHHHHHHHHHcCceeccc
Q psy4067 232 ISGLGMMTRINSQFEKTRKVSGPRSLQGSQWGMLCPSDTPEGEACGLVKNLALMTHITTENDEKNMLKIMYNIGIEHIAM 311 (1384)
Q Consensus 232 ls~lshlrRv~s~~~~~~K~~~pR~LhpsqwG~iCP~eTPEG~~cGLVKnLAl~a~It~~~~~~~i~~~l~~lG~~~~~~ 311 (1384)
+|+|||+||+++|+++++|.++||+||||||||+||+|||||++||||||||++|+|+.+.++.++.++|..+|+..++.
T Consensus 472 l~~lSh~Rrv~~~~~~~~k~~~~R~Lhps~~G~iCPveTPEG~~~GLv~~La~~a~i~~~~~~~~~~~~l~~~g~~~~~~ 551 (1207)
T d1twfb_ 472 SSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLED 551 (1207)
T ss_dssp HHHHHHHTEEECCC------CCTTSCCGGGTTTBCSSCCCSGGGBTTEEEBCTTCEECCCCCCHHHHHHHHHTTCEEGGG
T ss_pred HHHHHhhhcccCCcccccccchhhhcchhhccceeeeeCCCCCcccceeccceeeeeccccccceeeEEeeccCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cCCcccCCCCeEEEEECCEEEEEeecCcccCCcccccccccccccCCcccccccccccceEEEEEEEeeCCceeeeeeee
Q psy4067 312 FNGEELSSPGVYLVFVNGILAGITCHHKEVCKPEIEESFNYTRQTTPHECRLRDLTYSAPITVDIEYTRGSQRVVRSDLV 391 (1384)
Q Consensus 312 ~~~~~~~~~~~~~VflNG~~vG~~~~~i~ig~Psv~e~~~~~R~i~P~EcRlrd~TYsa~i~V~v~~~~~~~~~~~~~V~ 391 (1384)
..... ..+..+||+||.|+|++.++..+ .+.++..| +
T Consensus 552 ~~~~~--~~~~~~V~~nG~~~G~~~~~~~l-----~~~lr~~R--------------------------------~---- 588 (1207)
T d1twfb_ 552 YVPHQ--SPDATRVFVNGVWHGVHRNPARL-----METLRTLR--------------------------------R---- 588 (1207)
T ss_dssp CCGGG--CTTCEEEEETTEEEEEESCHHHH-----HHHHHHHH--------------------------------H----
T ss_pred eeecc--ccccceeeeeeeEEEEEcchhee-----ehheeeee--------------------------------e----
Confidence 65443 24678999999999999988766 55444444 1
Q ss_pred eccccceeccccccccCCcccccccceeeeeEEEeccccccchhhhHHhhccccccccCCChhhHHHHhhhccccccccc
Q psy4067 392 IGRMPIMLQSSKCVLRNKTEYTSSSRRASTSSVTMHSQRTSPLLSCKKLRQKRFQTYKKTPVDDARDFLSSTCIAHIPVI 471 (1384)
Q Consensus 392 IG~iPIMLrS~~CvL~g~~~~is~~~~~s~t~i~~~~~~~~P~~e~~~~~~~~~~~~~~~~~~ea~e~L~~~~LpHv~v~ 471 (1384)
-|.++.-. ++.
T Consensus 589 ~g~i~~~~-----------------------s~~---------------------------------------------- 599 (1207)
T d1twfb_ 589 KGDINPEV-----------------------SMI---------------------------------------------- 599 (1207)
T ss_dssp HTSSCTTC-----------------------EEE----------------------------------------------
T ss_pred ccCcccee-----------------------eee----------------------------------------------
Confidence 12111100 000
Q ss_pred cccchhhhHHHHHHHHHHHHhhcCCCCCCCCccccCcEeeehhhHHHHHHHHHHHHHHHHHHhhccccceeccccceeec
Q psy4067 472 NMRFKMKAMYLAVMIRRMVLALSDPDMLDDRDYYGNKRLELAGSLLSLMFEDVFKRFNSELKETNLSGVVNLVSGWWFEL 551 (1384)
Q Consensus 472 ~~~~~~Ka~yLg~MvRr~l~~~~~~~~~DDrD~ygNKRlelAG~Lls~lFe~~fk~~~~~~k~~~~~~i~sl~~g~w~~~ 551 (1384)
|..
T Consensus 600 ----------------------------------------------------------------------------~~~- 602 (1207)
T d1twfb_ 600 ----------------------------------------------------------------------------RDI- 602 (1207)
T ss_dssp ----------------------------------------------------------------------------EET-
T ss_pred ----------------------------------------------------------------------------eec-
Confidence 000
Q ss_pred ccCceeEeecCcccccccCCCCCCCcccccCCCCCeEEEec-ccccCCcchhhhHHHhhcccccccccccceeeccCCCC
Q psy4067 552 KYGNKIYIRSPSRKLLAAGFSGPHSGRVRLMPEGPTILLNS-CLRSGGKAQHEALYNAVQRHATKCCTLNFLFFLGGGGI 630 (1384)
Q Consensus 552 ~~~n~~~i~t~~r~~~a~Gvh~sh~GRicp~pEgp~i~~~~-~~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~fl~~g~i 630 (1384)
..+.+++.|+ .||+| +|.+++.. +.+....+ .++..++
T Consensus 603 -~~~~i~i~td-------------~Gr~~----rPlfi~~nd~~~~~~~~-------~mqrq~v---------------- 641 (1207)
T d1twfb_ 603 -REKELKIFTD-------------AGRVY----RPLFIVEDDESLGHKEL-------KVRKGHI---------------- 641 (1207)
T ss_dssp -TTTEEEEECC-------------SCCEE----EEEEEEECCCTTSSCEE-------SCCHHHH----------------
T ss_pred -cccceEEEec-------------Ccccc----CCceeecchhhhcccce-------eeeHhhH----------------
Confidence 0123788899 99999 99876631 10000000 0111111
Q ss_pred cccccccccceeeeEeeeccccccccccccccccCCCCCCCCCCCCCcccccccccccccccccccccCcEEEeccCCCc
Q psy4067 631 LPSIQRQTTCLLTLILFSLNGDGKRGARNSQQYCDCPDGYSSGCQPRPTFLNMHQFLGFKRFDDFLYEGKIEYLDVNEGN 710 (1384)
Q Consensus 631 ~~~~~~~~~~~l~~v~v~~~~~l~~~~r~~r~~~d~~~~~~~gr~~rPl~~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~ 710 (1384)
..+... .+.++..+ ........|.+++.+|.|||+|++|++
T Consensus 642 --------------------~~l~~~-----e~~~v~~~--------------~e~~~~~~~~~~~~~g~ieyid~~E~~ 682 (1207)
T d1twfb_ 642 --------------------AKLMAT-----EYQDIEGG--------------FEDVEEYTWSSLLNEGLVEYIDAEEEE 682 (1207)
T ss_dssp --------------------HHHHHH-----HHCC-----------------------CCCHHHHHHTTSEEEEEHHHHT
T ss_pred --------------------hhhhcc-----cccccccc--------------ccchhhccccccccCCceeeecchhcc
Confidence 000000 00000000 000134678899999999999999999
Q ss_pred ceEEEeCCCCCCC-----------------------ccceeecccCcccccccchhhhhhcccccCCCCCCCCCCCCCCc
Q psy4067 711 DSHIAVSESGIRP-----------------------GVTTHLEIAPFTLLGVCAGIELLQYNKRFHSPGLVPYPHHNQAP 767 (1384)
Q Consensus 711 ~~~ia~~~~~~~~-----------------------~~~th~ei~p~~~l~v~a~~~~~~~~~~~~~~~lipf~~hNqsp 767 (1384)
++.||+.++++.. ..+||+||+|+++||++|+ +|||+||||||
T Consensus 683 ~~~Ia~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~th~Ei~p~~ilg~~as--------------~iPf~~hNqSp 748 (1207)
T d1twfb_ 683 SILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAAS--------------IIPFPDHNQSP 748 (1207)
T ss_dssp TCCEESSGGGGCC---------CCCTTSCCCCCCCCSCCCEECSCGGGGSCTTGG--------------GSSSGGGSCHH
T ss_pred eEEEEecccccccccccccccccccchhheeeecccccccccccccceEEeeecc--------------eEEeccccccc
Confidence 9999999887642 2579999999999999999 99999999999
Q ss_pred cchhhhhhccccccccccccccccccceeeeccCCCceeeccccccccCCCCCCCccccCCCCccchhhcccccceeEEe
Q psy4067 768 RNTYQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGKCQISPGGAEELTARESCHEVLKII 847 (1384)
Q Consensus 768 Rn~yq~~m~kQ~~g~~~~~~~~R~D~~~~~l~~pQ~Piv~t~~~~~~~~~~~p~G~n~~~~~g~e~~~~~~~~~~vva~~ 847 (1384)
||||||||+|||||+|++|++.|+|+++|+|+|||+|||+|..++.+
T Consensus 749 Rn~yq~qm~KQa~G~~~~~~~~r~D~~~~~l~~pQ~Plv~t~~~~~~--------------------------------- 795 (1207)
T d1twfb_ 749 RNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYL--------------------------------- 795 (1207)
T ss_dssp HHHHHHHHGGGBCBCSCTTTTTCCCSEEEEESSCBCCSEECTTHHHH---------------------------------
T ss_pred ceeecccCCcccCCccccccceeccccceeEecCCCceeeccchhhh---------------------------------
Confidence 99999999999999999999999999999999999999999444433
Q ss_pred ecccceeeecccccccccccccccccccchhhcccccccccchhhhhhhccccceeeccccCCCCccccCCCCCCCccch
Q psy4067 848 SFSISVAVFDSVWLGDVKQGVHQLSEEKEPRLLRKFQYFDVRTPYRLRRLLCWECVLYNKRFHSPGLVPYPHHNQAPRNT 927 (1384)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~k~s~s~glIPF~~HNqSPRnt 927 (1384)
T Consensus 796 -------------------------------------------------------------------------------- 795 (1207)
T d1twfb_ 796 -------------------------------------------------------------------------------- 795 (1207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccccccceeeeccccceeeeeeeeeccCCceeeeeeEeecccCCCCCCcceEEEEeeecccccccceeeccccccc
Q psy4067 928 YQCAMGKQAMGCIGYNQQNRIDTLMYNLVYAQRPMVESKTIRITNFHKLPAGQNATIAVMSYSGYDIEDALIMNKASLDR 1007 (1384)
Q Consensus 928 yq~~M~KQAiG~~~yN~~~RiDt~~~~L~ypQkPLV~T~~i~~~~~~elp~GqN~iVAvmsy~GYN~EDAIIiNkssidR 1007 (1384)
+++++|+|+|++||||||+|||||||||+|+++++|
T Consensus 796 --------------------------------------------~~~e~p~G~N~iVAvmsy~GYN~EDAiIiNk~si~r 831 (1207)
T d1twfb_ 796 --------------------------------------------KFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDR 831 (1207)
T ss_dssp --------------------------------------------TTTTSCCCEEEEEEECBSSSTTTTTEEEEEHHHHHT
T ss_pred --------------------------------------------hhhcccchhceEEEEEeccCcccccccccchhhhhh
Confidence 345677888999999999999999999999999999
Q ss_pred CCceeeEEecceeeeeecCCCccceeeCCccccCCCCCcccccccCCCCcccCCceeecCceEEeeeccCccccccccCC
Q psy4067 1008 GFGRCLVYRNSKCVLKQYPNQTHDRILGPLLEADTRKPVYRHRALDQDGIVAPGEQICERQVLVNKSMPTISVSAISMAT 1087 (1384)
Q Consensus 1008 G~~rs~~yr~~~~~i~~~~~~~~d~i~~p~~~~~~~~p~~~~~~LDedGiv~~G~~V~~gDILIgKvsp~~~~~~~~~~~ 1087 (1384)
|||++++|++|.++++++..+..+.+..|......+.....|++||+||++++|++|.+|||||||++|..+.+
T Consensus 832 G~f~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ld~dGi~~~G~~v~~gdilvgk~~p~~~~~------ 905 (1207)
T d1twfb_ 832 GLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDE------ 905 (1207)
T ss_dssp TTTCEEEEEEEEECCCCSCTTCCCEESCCCCSSSCBCCSSCGGGCCTTSBCCTTCEECTTCEEECEECCCC---------
T ss_pred cccceeeeEEEEEEeccccccccccccccccccccccchhhhhcccccccccccccccCCceeeeeeeccCCch------
Confidence 99999999999999988887777777666543333334557899999999999999999999999999865431
Q ss_pred CccccccccccccccccceEEEEecCcchhhhHHHhhhccccccccccccccCCCcceeeeEeecCCCCCCCCCCcCcee
Q psy4067 1088 PEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNESGICPDII 1167 (1384)
Q Consensus 1088 ~e~k~~~~~~k~~~p~~vd~Vii~~~~~~~~~vki~irq~R~p~IGDKfssRHGqKGVis~ilp~eDMPfte~Gi~pDII 1167 (1384)
+ ...
T Consensus 906 -~--~~~------------------------------------------------------------------------- 909 (1207)
T d1twfb_ 906 -E--ELG------------------------------------------------------------------------- 909 (1207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -h--hhh-------------------------------------------------------------------------
Confidence 0 000
Q ss_pred eCCCCCCCcccccceeeecccccCCccceeeEEEEecCCCCcEEEEEEEEeecCCCcCCcccccCCCceeEEEEeecCCC
Q psy4067 1168 MNPHGLKGCDRITEYKEVPVSYKGSVPSYLEKVLVSSNSEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDM 1247 (1384)
Q Consensus 1168 iNP~gvpsr~~i~~~~e~s~~~k~~e~~~vd~V~i~~~~~~~~~vkV~ir~~R~p~iGDKfsSRHGQKGvvg~i~~qeDM 1247 (1384)
.......+++.|+.++..+.|+||+|..+.+.++.+.+||++|+.|+|+||||||||||||||||+|+|+|||
T Consensus 910 -------~~~~~~~~~~~s~~~~~~~~g~V~~v~~~~~~~~~~~~kv~i~~~R~p~iGDKfasRhGqKGv~s~i~p~eDM 982 (1207)
T d1twfb_ 910 -------QRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDM 982 (1207)
T ss_dssp -------------CCBBCCEECCTTCCEEEEEEEEEECSSSCEEEEEEEEEEECCCTTCEEECTTSCEEEEEEEECTTTS
T ss_pred -------hccccccccceeEEccCCCCeEEEEEEEeecccccceeeEEEEEEeccchhhhhhhccCCcceeeeeechhhC
Confidence 0001123567888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceEeeCCCCCCCccchhhhHHhhhhHHHhhcCCeeeeccCCCCCHHHHHHHHHHcCCCCCCceEEeeCCCCc
Q psy4067 1248 PFNESGICPDIIMNPHGYPSRMTVGKLIELLAGKAGLMEGNYKEGTAFGGTKLVDVQEELIRHGYNYQGKDIFYSGITGE 1327 (1384)
Q Consensus 1248 Pft~dGi~PDIIiNPhg~PSRMTIGql~E~l~Gk~~~~~g~~~d~t~F~~~~~~~i~~~L~~~G~~~~Gke~lydG~TGe 1327 (1384)
|||+||++|||||||||||||||||||+|+++||+|++.|.+.|+|||++..++++.+.|.++||+++|+|.||||+|||
T Consensus 983 Pf~~dG~~pDiI~NP~g~PSRMtiGql~E~~~gk~~~~~g~~~d~t~F~~~~~~~~~~~L~~~g~~~~G~e~ly~G~tG~ 1062 (1207)
T d1twfb_ 983 PFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK 1062 (1207)
T ss_dssp CEETTSCCCSEEECGGGSTTTTCHHHHHHHHHHHHHHHHCSCEECCSSSSCCHHHHHHHHHTTTSCTTSEECEECTTTCC
T ss_pred CcCCCCCCccEEECCCcCcccCcHHHHHHHHHHHHHHhcCCccccCCCCCccHHHHHHHHHHcCCCCCCCEEEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeEeEeeehhhccccccCccceeeccCCccccccCCCccccccCCCc
Q psy4067 1328 ALEAYIYSGPVYYQKLKHMVQDKIHARSRGPRVVLTRQPTGRRWKLTFTP 1377 (1384)
Q Consensus 1328 ~l~~~IfiGp~YYqRLkHMV~DKiHaRsrGP~~~LTrQP~eGRsr~~~~~ 1377 (1384)
+|+++||+||+|||||+|||+||+||||+||++.|||||++||||.|||-
T Consensus 1063 ~~~~~i~~G~~yy~rL~HmV~DK~~~Rs~Gp~~~lT~QP~~Gr~~~GG~R 1112 (1207)
T d1twfb_ 1063 KLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLR 1112 (1207)
T ss_dssp BCSSCEEEEEEEEEEBSSCGGGTCEEECCCC----------------CCC
T ss_pred CccceEEEehhHhhhhhhhhccccEeeccCCCCccccCCCCccccCCCcc
Confidence 99999999999999999999999999999999999999999999999984
|
| >d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|