Psyllid ID: psy4090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDVKEEKEREQNWFQR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHccHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
matvippneqFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKehpdawtrVDTILEYSSNQQTKFYALQILEQVIKTRWKalpreqcdvkEEKEREQNWFQR
Flexible Loop (DISEMBL)
matvippneqfKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALpreqcdvkeekereqnwfqr
Low Complexity Region (SEG)
MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDVKEEKEREQNWFQR
Disordered region (IsUnstruct)
**********FKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALP*******************
Disordered Region (DISOPRED)
*************LLDFNQKLDITLLDNIVECMYTGM*V**KAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD*KEEKEREQNWF**
Disordered Region (DISEMBL)
MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQC***************
Disordered Region (DISPRO)
*ATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDVKEEKEREQNWF**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDVKEEKEREQNWFQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
O14980	1071	Exportin-1 OS=Homo sapien	yes	N/A	0.776	0.081	0.724	1e-33
Q80U96	1071	Exportin-1 OS=Rattus norv	yes	N/A	0.776	0.081	0.724	2e-33
Q6P5F9	1071	Exportin-1 OS=Mus musculu	yes	N/A	0.776	0.081	0.724	2e-33
Q9TVM2	1063	Exportin-1 OS=Drosophila	yes	N/A	0.866	0.091	0.683	6e-33
Q54EV7	1057	Exportin-1 OS=Dictyosteli	yes	N/A	0.758	0.080	0.563	2e-21
P30822	1084	Exportin-1 OS=Saccharomyc	yes	N/A	0.741	0.076	0.506	4e-20
P14068	1078	Exportin-1 OS=Schizosacch	yes	N/A	0.741	0.076	0.506	2e-17

>sp|O14980|XPO1_HUMAN Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 73/87 (83%)

Query: 12  KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
           ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct: 14  RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query: 72  QTKFYALQILEQVIKTRWKALPREQCD 98
            TK+Y LQILE VIKTRWK LPR QC+
Sbjct: 74  NTKYYGLQILENVIKTRWKILPRNQCE 100

Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase RAN in its active GTP-bound form (Ran-GTP). Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of an nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap. Several viruses, among them HIV-1, HTLV-1 and influenza A use it to export their unspliced or incompletely spliced RNAs out of the nucleus. Interacts with, and mediates the nuclear export of HIV-1 Rev and HTLV-1 Rex proteins. Involved in HTLV-1 Rex multimerization.
Homo sapiens (taxid: 9606)

>sp|Q80U96|XPO1_RAT Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 73/87 (83%)

Query: 12  KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
           ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct: 14  RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query: 72  QTKFYALQILEQVIKTRWKALPREQCD 98
            TK+Y LQILE VIKTRWK LPR QC+
Sbjct: 74  NTKYYGLQILENVIKTRWKILPRNQCE 100

Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase Ran in its active GTP-bound form. Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of an nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap.

Rattus norvegicus (taxid: 10116)

>sp|Q6P5F9|XPO1_MOUSE Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 73/87 (83%)

Query: 12  KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
           ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct: 14  RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query: 72  QTKFYALQILEQVIKTRWKALPREQCD 98
            TK+Y LQILE VIKTRWK LPR QC+
Sbjct: 74  NTKYYGLQILENVIKTRWKILPRNQCE 100

Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase Ran in its active GTP-bound form. Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of an nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap.

Mus musculus (taxid: 10090)

>sp|Q9TVM2|XPO1_DROME Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1

 Score =  139 bits (350), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 80/98 (81%), Gaps = 1/98 (1%)

Query: 1  MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR 60
          MAT++  +E   KLLDF+QKLDI LLD IVE +YT  G + + AQ +LT LKEHP+AWTR
Sbjct: 1  MATMLTSDEA-GKLLDFSQKLDINLLDKIVEVVYTAQGEQLRLAQSILTTLKEHPEAWTR 59

Query: 61 VDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
          VD+ILEYS NQ+TKFYALQILE+VIKTRWK LPR QC+
Sbjct: 60 VDSILEYSQNQRTKFYALQILEEVIKTRWKVLPRNQCE 97

Receptor for the leucine-rich nuclear export signal (NES). Binds cooperatively to the NES on its target protein and to the small GTPase Ran in its active GTP-bound form. Required for the function or maintenance of certain tissues such as brain and gut. Involved in the export of dl from the nucleus to the cytoplasm.

Drosophila melanogaster (taxid: 7227)

>sp|Q54EV7|XPO1_DICDI Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)

Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQ--KAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
          +L+FN+ LDI LLD IV  +Y  +  +   KAAQ VL   +EHPDAW++VDTILE S   
Sbjct: 4  ILNFNEPLDINLLDQIVSVLYNPLSNKNDIKAAQMVLGKFQEHPDAWSKVDTILETSKIV 63

Query: 72 QTKFYALQILEQVIKTRWKALPREQCD 98
          QTKF AL I++ +IK RWK+LPREQC+
Sbjct: 64 QTKFIALVIMDSLIKYRWKSLPREQCE 90

Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES).

Dictyostelium discoideum (taxid: 44689)

>sp|P30822|XPO1_YEAST Exportin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CRM1 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)

Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 4  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 63

Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 64 KFIALSILDKLITRKWKLLPNDH 86

Receptor for the leucine-rich nuclear export signal (NES).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P14068|XPO1_SCHPO Exportin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=xpo1 PE=1 SV=3

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 62/83 (74%)

Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +L F+++LD+ LLD +V+  Y G+G EQ+ AQ+VLT  + HPDAW++  +ILE S   QT
Sbjct: 4  ILAFDRELDVALLDRVVQTFYQGVGAEQQQAQQVLTQFQAHPDAWSQAYSILEKSEYPQT 63

Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          K+ AL +L+++I TRWK LP+EQ
Sbjct: 64 KYIALSVLDKLITTRWKMLPKEQ 86

Receptor for the leucine-rich nuclear export signal (NES).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
48120807	1062	PREDICTED: exportin-1 [Apis mellifera]	0.848	0.089	0.795	8e-38
350413068	1062	PREDICTED: exportin-1-like [Bombus impat	0.848	0.089	0.795	9e-38
340709138	1062	PREDICTED: exportin-1-like [Bombus terre	0.848	0.089	0.795	9e-38
383859079	1050	PREDICTED: exportin-1-like [Megachile ro	0.848	0.090	0.785	2e-37
332024051	1093	Exportin-1 [Acromyrmex echinatior]	0.848	0.086	0.785	2e-37
156543308	1060	PREDICTED: exportin-1-like [Nasonia vitr	0.848	0.089	0.775	6e-37
193587136	1079	PREDICTED: exportin-1 isoform 3 [Acyrtho	0.848	0.088	0.765	9e-37
443695739	1075	hypothetical protein CAPTEDRAFT_219863 [	0.803	0.083	0.788	5e-36
357602250	1060	putative nuclear export factor CRM1 [Dan	0.848	0.089	0.744	9e-36
405969599	1069	Exportin-1 [Crassostrea gigas]	0.848	0.088	0.757	1e-34

>gi|48120807|ref|XP_396469.1| PREDICTED: exportin-1 [Apis mellifera]

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 85/98 (86%), Gaps = 3/98 (3%)

Query: 1  MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR 60
          MAT+    EQ  KLLDFNQKLDITLLDNIV CMYTG+G +Q+ AQEVLT LKEHP+AWTR
Sbjct: 1  MATL---AEQASKLLDFNQKLDITLLDNIVGCMYTGIGEQQRVAQEVLTTLKEHPNAWTR 57

Query: 61 VDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
          VDTILEYS NQQTK+YALQILEQVIKTRWK LPR QC+
Sbjct: 58 VDTILEYSQNQQTKYYALQILEQVIKTRWKVLPRNQCE 95

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413068|ref|XP_003489867.1| PREDICTED: exportin-1-like [Bombus impatiens]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 85/98 (86%), Gaps = 3/98 (3%)

Query: 1  MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR 60
          MAT+    EQ  KLLDFNQKLDITLLDNIV CMYTG+G +Q+ AQEVLT LKEHP+AWTR
Sbjct: 1  MATL---AEQASKLLDFNQKLDITLLDNIVGCMYTGIGEQQRVAQEVLTTLKEHPNAWTR 57

Query: 61 VDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
          VDTILEYS NQQTK+YALQILEQVIKTRWK LPR QC+
Sbjct: 58 VDTILEYSQNQQTKYYALQILEQVIKTRWKVLPRNQCE 95

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709138|ref|XP_003393170.1| PREDICTED: exportin-1-like [Bombus terrestris]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 85/98 (86%), Gaps = 3/98 (3%)

Query: 1  MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR 60
          MAT+    EQ  KLLDFNQKLDITLLDNIV CMYTG+G +Q+ AQEVLT LKEHP+AWTR
Sbjct: 1  MATL---AEQASKLLDFNQKLDITLLDNIVGCMYTGIGEQQRVAQEVLTTLKEHPNAWTR 57

Query: 61 VDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
          VDTILEYS NQQTK+YALQILEQVIKTRWK LPR QC+
Sbjct: 58 VDTILEYSQNQQTKYYALQILEQVIKTRWKVLPRNQCE 95

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859079|ref|XP_003705025.1| PREDICTED: exportin-1-like [Megachile rotundata]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/98 (78%), Positives = 85/98 (86%), Gaps = 3/98 (3%)

Query: 1  MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR 60
          MAT+    EQ  KLLDFNQKLDITLLDNIV CMY+G+G +Q+ AQEVLT LKEHP+AWTR
Sbjct: 1  MATL---EEQASKLLDFNQKLDITLLDNIVGCMYSGIGEQQRVAQEVLTTLKEHPNAWTR 57

Query: 61 VDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
          VDTILEYS NQQTK+YALQILEQVIKTRWK LPR QC+
Sbjct: 58 VDTILEYSQNQQTKYYALQILEQVIKTRWKVLPRNQCE 95

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024051|gb|EGI64269.1| Exportin-1 [Acromyrmex echinatior]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/98 (78%), Positives = 84/98 (85%), Gaps = 3/98 (3%)

Query: 1   MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR 60
           MAT+    EQ  KLLDFNQKLDITLLDNIV CMYTG+G +Q+ AQEVLT LKEHP+AWTR
Sbjct: 30  MATL---AEQASKLLDFNQKLDITLLDNIVGCMYTGIGEQQRVAQEVLTTLKEHPNAWTR 86

Query: 61  VDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
           VDTILEYS NQQTK+Y LQILEQVIKTRWK LPR QC+
Sbjct: 87  VDTILEYSQNQQTKYYGLQILEQVIKTRWKVLPRNQCE 124

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543308|ref|XP_001604619.1| PREDICTED: exportin-1-like [Nasonia vitripennis]

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/98 (77%), Positives = 85/98 (86%), Gaps = 3/98 (3%)

Query: 1  MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR 60
          MAT+    EQ  KLLDFNQKLDITLLDNIV CMY+G+G +Q+ AQEVLT LKEHP+AWTR
Sbjct: 1  MATL---AEQASKLLDFNQKLDITLLDNIVGCMYSGIGEQQRVAQEVLTTLKEHPEAWTR 57

Query: 61 VDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
          VDTILE+S NQQTK+YALQILEQVIKTRWK LPR QC+
Sbjct: 58 VDTILEFSQNQQTKYYALQILEQVIKTRWKVLPRNQCE 95

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193587136|ref|XP_001943261.1| PREDICTED: exportin-1 isoform 3 [Acyrthosiphon pisum] gi|328719026|ref|XP_003246644.1| PREDICTED: exportin-1 isoform 2 [Acyrthosiphon pisum]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 86/98 (87%), Gaps = 3/98 (3%)

Query: 1  MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR 60
          MAT+    EQ  KLLDF+QKLDITLL+NIV CMYTG G +Q+AAQEVLT LKEHPDAWTR
Sbjct: 1  MATM---TEQVSKLLDFSQKLDITLLENIVGCMYTGTGDQQRAAQEVLTTLKEHPDAWTR 57

Query: 61 VDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
          VDTILE+S+NQQTK++ALQILEQ+IKTRWK LPR QC+
Sbjct: 58 VDTILEFSNNQQTKYFALQILEQLIKTRWKVLPRNQCE 95

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443695739|gb|ELT96589.1| hypothetical protein CAPTEDRAFT_219863 [Capitella teleta]

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/90 (78%), Positives = 79/90 (87%)

Query: 9   EQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYS 68
           EQ  KLLDFNQKLDI LLD++V C+YTG GV+Q+ AQ+VLTALKEHPDAWTRVDTILEYS
Sbjct: 13  EQTSKLLDFNQKLDINLLDSVVNCLYTGQGVQQRLAQDVLTALKEHPDAWTRVDTILEYS 72

Query: 69  SNQQTKFYALQILEQVIKTRWKALPREQCD 98
            NQQTK+YALQILE VIK RWK LPR QC+
Sbjct: 73  HNQQTKYYALQILENVIKARWKVLPRPQCE 102

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|357602250|gb|EHJ63323.1| putative nuclear export factor CRM1 [Danaus plexippus]

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/98 (74%), Positives = 85/98 (86%), Gaps = 3/98 (3%)

Query: 1  MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR 60
          MAT+    +Q  KLLDFNQKLDITLLDNIV C+Y+ +G +Q+ AQ++LTALKEHPDAWTR
Sbjct: 1  MATL---EQQASKLLDFNQKLDITLLDNIVGCLYSTVGEQQRVAQDILTALKEHPDAWTR 57

Query: 61 VDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
          VDTILEYS NQ+TK+YALQILEQVIKTRWK LPR QC+
Sbjct: 58 VDTILEYSQNQETKYYALQILEQVIKTRWKVLPRNQCE 95

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405969599|gb|EKC34561.1| Exportin-1 [Crassostrea gigas]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/95 (75%), Positives = 80/95 (84%)

Query: 3  TVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVD 62
          T +  +E+  KLLDF+QKLDITLLDNIV  MYTG G +Q+ AQEVLT LKEHPD+WTRVD
Sbjct: 2  TSVNLSEEAAKLLDFSQKLDITLLDNIVTMMYTGNGPQQRMAQEVLTTLKEHPDSWTRVD 61

Query: 63 TILEYSSNQQTKFYALQILEQVIKTRWKALPREQC 97
          TILEYS NQQTK+YALQILE VIKTRWK LPR QC
Sbjct: 62 TILEYSVNQQTKYYALQILENVIKTRWKVLPRAQC 96

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
UNIPROTKB|F1NFM1	299	XPO1 "Uncharacterized protein"	0.776	0.290	0.735	3.7e-32
UNIPROTKB|C9J673	132	XPO1 "Exportin-1" [Homo sapien	0.776	0.659	0.724	1.3e-31
UNIPROTKB|C9JKM9	179	XPO1 "Exportin-1" [Homo sapien	0.776	0.486	0.724	1.3e-31
UNIPROTKB|C9JV99	100	XPO1 "Exportin-1" [Homo sapien	0.776	0.87	0.724	1.3e-31
UNIPROTKB|F1SQM6	105	XPO1 "Uncharacterized protein"	0.776	0.828	0.724	1.3e-31
ZFIN|ZDB-GENE-070530-6	1074	xpo1b "exportin 1 (CRM1 homolo	0.821	0.085	0.717	1.9e-31
UNIPROTKB|F1NVE5	1071	XPO1 "Uncharacterized protein"	0.776	0.081	0.735	6.6e-31
UNIPROTKB|Q9PW90	1071	Q9PW90 "CRM1/XPO1 protein" [Xe	0.776	0.081	0.735	8.4e-31
FB|FBgn0020497	1063	emb "embargoed" [Drosophila me	0.866	0.091	0.683	1.4e-30
UNIPROTKB|E1BE98	1071	XPO1 "Uncharacterized protein"	0.776	0.081	0.724	2.3e-30

UNIPROTKB|F1NFM1 XPO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 64/87 (73%), Positives = 73/87 (83%)

Query:    12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
             ++LLDFNQKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct:    14 RQLLDFNQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query:    72 QTKFYALQILEQVIKTRWKALPREQCD 98
              TK+Y LQILE VIKTRWK LPR QC+
Sbjct:    74 NTKYYGLQILENVIKTRWKILPRNQCE 100

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|C9J673 XPO1 "Exportin-1" [Homo sapiens (taxid:9606)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 63/87 (72%), Positives = 73/87 (83%)

Query:    12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
             ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct:    14 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query:    72 QTKFYALQILEQVIKTRWKALPREQCD 98
              TK+Y LQILE VIKTRWK LPR QC+
Sbjct:    74 NTKYYGLQILENVIKTRWKILPRNQCE 100

GO:0005643 "nuclear pore" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0010824 "regulation of centrosome duplication" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0046825 "regulation of protein export from nucleus" evidence=IEA

UNIPROTKB|C9JKM9 XPO1 "Exportin-1" [Homo sapiens (taxid:9606)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 63/87 (72%), Positives = 73/87 (83%)

Query:    12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
             ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct:    14 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query:    72 QTKFYALQILEQVIKTRWKALPREQCD 98
              TK+Y LQILE VIKTRWK LPR QC+
Sbjct:    74 NTKYYGLQILENVIKTRWKILPRNQCE 100

GO:0005643 "nuclear pore" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0010824 "regulation of centrosome duplication" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0046825 "regulation of protein export from nucleus" evidence=IEA

UNIPROTKB|C9JV99 XPO1 "Exportin-1" [Homo sapiens (taxid:9606)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 63/87 (72%), Positives = 73/87 (83%)

Query:    12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
             ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct:    14 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query:    72 QTKFYALQILEQVIKTRWKALPREQCD 98
              TK+Y LQILE VIKTRWK LPR QC+
Sbjct:    74 NTKYYGLQILENVIKTRWKILPRNQCE 100

GO:0005643 "nuclear pore" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0010824 "regulation of centrosome duplication" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0046825 "regulation of protein export from nucleus" evidence=IEA

UNIPROTKB|F1SQM6 XPO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 63/87 (72%), Positives = 73/87 (83%)

Query:    12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
             ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct:    14 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query:    72 QTKFYALQILEQVIKTRWKALPREQCD 98
              TK+Y LQILE VIKTRWK LPR QC+
Sbjct:    74 NTKYYGLQILENVIKTRWKILPRNQCE 100

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

ZFIN|ZDB-GENE-070530-6 xpo1b "exportin 1 (CRM1 homolog, yeast) b" [Danio rerio (taxid:7955)]

 Score = 357 (130.7 bits), Expect = 1.9e-31, P = 1.9e-31
 Identities = 66/92 (71%), Positives = 77/92 (83%)

Query:    12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
             ++LLDFNQKLDI LLDN+V C+Y G+G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct:    14 RQLLDFNQKLDINLLDNVVNCLYHGVGPQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query:    72 QTKFYALQILEQVIKTRWKALPREQCDVKEEK 103
              TK+YALQILE VIKTRWK LPR QC+   +K
Sbjct:    74 NTKYYALQILETVIKTRWKILPRNQCEAGIKK 105

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|F1NVE5 XPO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 352 (129.0 bits), Expect = 6.6e-31, P = 6.6e-31
 Identities = 64/87 (73%), Positives = 73/87 (83%)

Query:    12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
             ++LLDFNQKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct:    14 RQLLDFNQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query:    72 QTKFYALQILEQVIKTRWKALPREQCD 98
              TK+Y LQILE VIKTRWK LPR QC+
Sbjct:    74 NTKYYGLQILENVIKTRWKILPRNQCE 100

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|Q9PW90 Q9PW90 "CRM1/XPO1 protein" [Xenopus laevis (taxid:8355)]

 Score = 351 (128.6 bits), Expect = 8.4e-31, P = 8.4e-31
 Identities = 64/87 (73%), Positives = 73/87 (83%)

Query:    12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
             ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct:    14 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query:    72 QTKFYALQILEQVIKTRWKALPREQCD 98
              TK+Y LQILE VIKTRWK LPR QCD
Sbjct:    74 NTKYYGLQILENVIKTRWKILPRNQCD 100

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0020497 emb "embargoed" [Drosophila melanogaster (taxid:7227)]

 Score = 349 (127.9 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 67/98 (68%), Positives = 80/98 (81%)

Query:     1 MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR 60
             MAT++  +E   KLLDF+QKLDI LLD IVE +YT  G + + AQ +LT LKEHP+AWTR
Sbjct:     1 MATMLTSDEA-GKLLDFSQKLDINLLDKIVEVVYTAQGEQLRLAQSILTTLKEHPEAWTR 59

Query:    61 VDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
             VD+ILEYS NQ+TKFYALQILE+VIKTRWK LPR QC+
Sbjct:    60 VDSILEYSQNQRTKFYALQILEEVIKTRWKVLPRNQCE 97

GO:0005049 "nuclear export signal receptor activity" evidence=ISS;NAS

GO:0006611 "protein export from nucleus" evidence=ISS;IMP;NAS

GO:0007275 "multicellular organismal development" evidence=IDA

GO:0008565 "protein transporter activity" evidence=IDA

GO:0005643 "nuclear pore" evidence=IMP

GO:0015031 "protein transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051168 "nuclear export" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0007099 "centriole replication" evidence=IMP

UNIPROTKB|E1BE98 XPO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 63/87 (72%), Positives = 73/87 (83%)

Query:    12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
             ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct:    14 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query:    72 QTKFYALQILEQVIKTRWKALPREQCD 98
              TK+Y LQILE VIKTRWK LPR QC+
Sbjct:    74 NTKYYGLQILENVIKTRWKILPRNQCE 100

GO:0046825 "regulation of protein export from nucleus" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0010824 "regulation of centrosome duplication" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0005642 "annulate lamellae" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P5F9	XPO1_MOUSE	No assigned EC number	0.7241	0.7767	0.0812	yes	N/A
Q54EV7	XPO1_DICDI	No assigned EC number	0.5632	0.7589	0.0804	yes	N/A
Q9TVM2	XPO1_DROME	No assigned EC number	0.6836	0.8660	0.0912	yes	N/A
O14980	XPO1_HUMAN	No assigned EC number	0.7241	0.7767	0.0812	yes	N/A
Q80U96	XPO1_RAT	No assigned EC number	0.7241	0.7767	0.0812	yes	N/A
P30822	XPO1_YEAST	No assigned EC number	0.5060	0.7410	0.0765	yes	N/A
P14068	XPO1_SCHPO	No assigned EC number	0.5060	0.7410	0.0769	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
COG5101	1053	COG5101, CRM1, Importin beta-related nuclear trans	2e-27
smart00913	67	smart00913, IBN_N, Importin-beta N-terminal domain	4e-11
pfam03810	71	pfam03810, IBN_N, Importin-beta N-terminal domain	1e-04

>gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

 Score =  104 bits (260), Expect = 2e-27
 Identities = 38/83 (45%), Positives = 55/83 (66%)

Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +L+F++ LDI LLD +V   Y G G +Q+ AQ +LT  +E PDAWT+ D IL  S   Q+
Sbjct: 4  ILEFDKDLDIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQS 63

Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          K+ AL +L+++I T+WK LP   
Sbjct: 64 KYIALSLLDKLITTKWKLLPEGM 86

Length = 1053

>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain

 Score = 53.8 bits (130), Expect = 4e-11
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 44 AQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
          A++ L   ++ P  W  +  IL  S +Q  +  A   L+  I  RW +LP E+ +
Sbjct: 1  AEKQLEQFQKSPGFWLLLLEILANSEDQYVRQLAAITLKNKITRRWSSLPEEEKE 55

Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins.. which is important for importin-beta mediated transport. Length = 67

>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 44 AQEVLTALKE-HPDAWTRVDTILEY-SSNQQTKFYALQILEQVIKTRWKALP 93
          A++ L   ++  P  W+++  IL   SS+ Q +  A   L+ +I   W  L 
Sbjct: 1  AEKQLEQFEKQDPGFWSKLLQILSDTSSDLQVRQLAALYLKNLITRHWNQLS 52

Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	99.95
KOG2020|consensus	1041		99.77
PF03810	77	IBN_N: Importin-beta N-terminal domain; InterPro:	99.38
KOG1410|consensus	1082		99.33
KOG2022|consensus	982		98.91
KOG2021|consensus	980		98.46
KOG2171|consensus	1075		98.17
KOG2081|consensus	559		97.58
KOG1991|consensus	1010		96.69
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.95
KOG1992|consensus	960		93.2
KOG1241|consensus	859		92.67
KOG2023|consensus	885		90.99
KOG1993|consensus	978		86.16
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	83.8
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	83.8
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	83.02
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	82.72

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=99.95  E-value=5.4e-28  Score=206.02  Aligned_cols=95  Identities=40%  Similarity=0.690  Sum_probs=93.3

Q ss_pred             HHHhhcccccCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc
Q psy4090          11 FKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWK   90 (112)
Q Consensus        11 ~~~lld~~~~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~   90 (112)
                      ||.||+|+..+||++||+||+.||+|.|.++++||++|.+||++||||+++++||++|+.|++||.|||+|+++|+++|+
T Consensus         1 MEgIL~fd~dLdiallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWk   80 (1053)
T COG5101           1 MEGILEFDKDLDIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWK   80 (1053)
T ss_pred             CcchhhcccccCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhH
Q psy4090          91 ALPREQCDVKEEKER  105 (112)
Q Consensus        91 ~Lp~eqr~~IRnyv~  105 (112)
                      .||+++|.||||||-
T Consensus        81 llp~~~r~GiRnyvv   95 (1053)
T COG5101          81 LLPEGMRQGIRNYVV   95 (1053)
T ss_pred             hCCcHHHHHHHHHHH
Confidence            999999999999984

>KOG2020|consensus

Probab=99.77  E-value=4.2e-19  Score=158.09  Aligned_cols=94  Identities=43%  Similarity=0.637  Sum_probs=89.3

Q ss_pred             HhhcccccCCHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccC
Q psy4090          13 KLLDFNQKLDITLLDNIVECMYT-GMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKA   91 (112)
Q Consensus        13 ~lld~~~~~dv~~Ld~vv~~~y~-~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~   91 (112)
                      +++| ++++|+..||.++..+|. |++.+|.+|+++|.+||+.|++|..|+.||+.|+++.+||||||+||++|+++|+.
T Consensus         1 ~~~~-~~~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~   79 (1041)
T KOG2020|consen    1 QLLD-DNKLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNS   79 (1041)
T ss_pred             CCcc-chhHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhccc
Confidence            3678 899999999999999998 77789999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhHhh
Q psy4090          92 LPREQCDVKEEKEREQ  107 (112)
Q Consensus        92 Lp~eqr~~IRnyv~~~  107 (112)
                      +|.++|.|||+||-+-
T Consensus        80 ~~~~~r~glk~~v~~~   95 (1041)
T KOG2020|consen   80 LPVEERVGLKNYVLTL   95 (1041)
T ss_pred             CCccccHHHHHHHHHH
Confidence            9999999999999763

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope

Probab=99.38  E-value=3.2e-12  Score=80.87  Aligned_cols=63  Identities=24%  Similarity=0.463  Sum_probs=60.0

Q ss_pred             HHHHHHHHhcC-CccHHHHHHHh-ccCchHHHHHHHHHHHHHHHhhccc--------CCCHHHHHHHHHHhHh
Q psy4090          44 AQEVLTALKEH-PDAWTRVDTIL-EYSSNQQTKFYALQILEQVIKTRWK--------ALPREQCDVKEEKERE  106 (112)
Q Consensus        44 A~~iL~~fk~~-pdaw~~v~~IL-~~S~~~~tk~fALqiLe~~I~~~W~--------~Lp~eqr~~IRnyv~~  106 (112)
                      |++.|.+|+.+ |++|..|..|+ +.+.++++|+||+.+|.+.|+++|+        .+|+++|..||+++.+
T Consensus         1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~   73 (77)
T PF03810_consen    1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQ   73 (77)
T ss_dssp             HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHH
Confidence            78999999999 99999999999 7777999999999999999999999        9999999999999875

Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....

>KOG1410|consensus

Probab=99.33  E-value=6.7e-12  Score=108.75  Aligned_cols=84  Identities=19%  Similarity=0.285  Sum_probs=79.3

Q ss_pred             CHHHHHHHHHHHhCCChH-HHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHHH
Q psy4090          22 DITLLDNIVECMYTGMGV-EQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDVK  100 (112)
Q Consensus        22 dv~~Ld~vv~~~y~~~~~-~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~I  100 (112)
                      ..+.|+.+|..+|.+++. +|.+|++-|.+|.++||+.++|..+|++++.||+.+.|.+.|.+++..+- .||-+||.+|
T Consensus         3 sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~qrldi   81 (1082)
T KOG1410|consen    3 SLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLEQRLDI   81 (1082)
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHHHHHHH
Confidence            478999999999999875 79999999999999999999999999999999999999999999998874 7999999999


Q ss_pred             HHHhHh
Q psy4090         101 EEKERE  106 (112)
Q Consensus       101 Rnyv~~  106 (112)
                      |+|+.+
T Consensus        82 r~Yiln   87 (1082)
T KOG1410|consen   82 RNYILN   87 (1082)
T ss_pred             HHHHHH
Confidence            999986

>KOG2022|consensus

Probab=98.91  E-value=7.1e-09  Score=91.61  Aligned_cols=87  Identities=16%  Similarity=0.249  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q psy4090          21 LDITLLDNIVECMYTGMG-VEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDV   99 (112)
Q Consensus        21 ~dv~~Ld~vv~~~y~~~~-~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~   99 (112)
                      -+|..++.++..+|.+.+ +..+.++++|.+.+.+|++|..-+.+|+..+++.++|||..+|+..|++||..+|++++..
T Consensus         4 ~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~q   83 (982)
T KOG2022|consen    4 DLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQ   83 (982)
T ss_pred             hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHH
Confidence            378999999999999855 5699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHhh
Q psy4090         100 KEEKEREQ  107 (112)
Q Consensus       100 IRnyv~~~  107 (112)
                      ++-.+.++
T Consensus        84 L~~klf~~   91 (982)
T KOG2022|consen   84 LKLKLFLI   91 (982)
T ss_pred             HHHHHHHH
Confidence            88766543

>KOG2021|consensus

Probab=98.46  E-value=7.5e-07  Score=78.38  Aligned_cols=79  Identities=22%  Similarity=0.372  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhCC-Ch-HHHHHHHHHHHHHhcCCccHHHHHHHhccC-chHHHHHHHHHHHHHHHhhcccCCCHHHHHHHH
Q psy4090          25 LLDNIVECMYTG-MG-VEQKAAQEVLTALKEHPDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTRWKALPREQCDVKE  101 (112)
Q Consensus        25 ~Ld~vv~~~y~~-~~-~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S-~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~IR  101 (112)
                      .++++|.+..+| .+ ..|++|-..+.++|.+|++|.-|-.+|.++ +++.+|||+||+|+++++.+.+..+..+..-||
T Consensus         4 diEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elqlvR   83 (980)
T KOG2021|consen    4 DIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQLVR   83 (980)
T ss_pred             HHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHHHH
Confidence            578888888888 33 469999999999999999999999999555 999999999999999999999988888866665


Q ss_pred             HH
Q psy4090         102 EK  103 (112)
Q Consensus       102 ny  103 (112)
                      .-
T Consensus        84 ~s   85 (980)
T KOG2021|consen   84 FS   85 (980)
T ss_pred             HH
Confidence            43

>KOG2171|consensus

Probab=98.17  E-value=1.5e-05  Score=72.27  Aligned_cols=85  Identities=19%  Similarity=0.277  Sum_probs=77.1

Q ss_pred             CHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHHHH
Q psy4090          22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDVKE  101 (112)
Q Consensus        22 dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~IR  101 (112)
                      |.+.|.+++..+..|++..|++|++.|...--.+..-.....|+..+.+|.+|=+|+-.+.+++++.|+.|+.|.|..||
T Consensus         2 ~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~sik   81 (1075)
T KOG2171|consen    2 DSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIK   81 (1075)
T ss_pred             chhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            56789999999999988899999999995544455888889999999999999999999999999999999999999999


Q ss_pred             HHhHh
Q psy4090         102 EKERE  106 (112)
Q Consensus       102 nyv~~  106 (112)
                      +-+++
T Consensus        82 s~lL~   86 (1075)
T KOG2171|consen   82 SSLLE   86 (1075)
T ss_pred             HHHHH
Confidence            98875

>KOG2081|consensus

Probab=97.58  E-value=9.7e-05  Score=63.16  Aligned_cols=63  Identities=21%  Similarity=0.329  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHh
Q psy4090          42 KAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDVKEEKE  104 (112)
Q Consensus        42 ~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~IRnyv  104 (112)
                      .+|.++|..||.++++|..|..||..-...++.+||.|+|.+.|++-.+.||+.+-...|+-+
T Consensus         2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl   64 (559)
T KOG2081|consen    2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSL   64 (559)
T ss_pred             chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999998888887743

>KOG1991|consensus

Probab=96.69  E-value=0.018  Score=52.40  Aligned_cols=85  Identities=24%  Similarity=0.261  Sum_probs=68.2

Q ss_pred             CHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCch-HHHHHHHHHHHHHHHhhcccCC--------
Q psy4090          22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSN-QQTKFYALQILEQVIKTRWKAL--------   92 (112)
Q Consensus        22 dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~-~~tk~fALqiLe~~I~~~W~~L--------   92 (112)
                      |...|-++..+-..++...|+.|++-|.++...|.....|-.|...... -.+|--|.--|.+.|.+.|++.        
T Consensus         2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~   81 (1010)
T KOG1991|consen    2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFG   81 (1010)
T ss_pred             ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCC
Confidence            5556666666666666678999999999999999999999998855554 4559999999999999999986        


Q ss_pred             -CHHHHHHHHHHhHh
Q psy4090          93 -PREQCDVKEEKERE  106 (112)
Q Consensus        93 -p~eqr~~IRnyv~~  106 (112)
                       ++++|.-||+=+.+
T Consensus        82 I~e~dk~~irenIl~   96 (1010)
T KOG1991|consen   82 IPEEDKAVIRENILE   96 (1010)
T ss_pred             CChHHHHHHHHHHHH
Confidence             67887777765544

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.036  Score=49.70  Aligned_cols=79  Identities=14%  Similarity=0.215  Sum_probs=65.0

Q ss_pred             HHHHHHhCC---ChHHHHHHHHHHHHHhcCCccHHHHHHHhccC-chHHHHHHHHHHHHHHHhhcccCC-----CHHHHH
Q psy4090          28 NIVECMYTG---MGVEQKAAQEVLTALKEHPDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTRWKAL-----PREQCD   98 (112)
Q Consensus        28 ~vv~~~y~~---~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S-~~~~tk~fALqiLe~~I~~~W~~L-----p~eqr~   98 (112)
                      .++++|-++   ....|..|+..|.++.-.|.....|-.|+... -++++|.-|.--|.+.|.+.|.++     +.+.+.
T Consensus         4 ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~   83 (970)
T COG5656           4 ELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKS   83 (970)
T ss_pred             HHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccH
Confidence            345554443   33469999999999999999999999999655 889999999999999999999983     446788


Q ss_pred             HHHHHhHh
Q psy4090          99 VKEEKERE  106 (112)
Q Consensus        99 ~IRnyv~~  106 (112)
                      ++|.|+.|
T Consensus        84 e~K~~lie   91 (970)
T COG5656          84 EAKKYLIE   91 (970)
T ss_pred             HHHHHHHH
Confidence            88888776

>KOG1992|consensus

Probab=93.20  E-value=0.54  Score=42.68  Aligned_cols=80  Identities=14%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             HHHHHHHHhC---CChHHHHHHHHHHHHHhcCCccHHHHHHHhccCc-hHHHHHHHHHHHHHHHhhcccC-------CCH
Q psy4090          26 LDNIVECMYT---GMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSS-NQQTKFYALQILEQVIKTRWKA-------LPR   94 (112)
Q Consensus        26 Ld~vv~~~y~---~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~-~~~tk~fALqiLe~~I~~~W~~-------Lp~   94 (112)
                      |+.+..++-.   |....|+-|++.|.+...++..-..+-.++.+++ .+++|.-|.--+.+-||++|-.       ++.
T Consensus         4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~   83 (960)
T KOG1992|consen    4 LETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIE   83 (960)
T ss_pred             HHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccch
Confidence            4444444433   3345699999999999999999888888888877 9999999999999999999964       455


Q ss_pred             HHHHHHHHHhH
Q psy4090          95 EQCDVKEEKER  105 (112)
Q Consensus        95 eqr~~IRnyv~  105 (112)
                      +.|+-||.-+-
T Consensus        84 ~~~e~ikslIv   94 (960)
T KOG1992|consen   84 EDREQIKSLIV   94 (960)
T ss_pred             hHHHHHHHHHH
Confidence            57788877553

>KOG1241|consensus

Probab=92.67  E-value=0.54  Score=42.30  Aligned_cols=78  Identities=17%  Similarity=0.196  Sum_probs=58.9

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHHhcCC--ccHHHHHHHh-ccCchHHHHHHHHHHHHHHHh-----------hcccCCCH
Q psy4090          29 IVECMYTGMGVEQKAAQEVLTALKEHP--DAWTRVDTIL-EYSSNQQTKFYALQILEQVIK-----------TRWKALPR   94 (112)
Q Consensus        29 vv~~~y~~~~~~r~~A~~iL~~fk~~p--daw~~v~~IL-~~S~~~~tk~fALqiLe~~I~-----------~~W~~Lp~   94 (112)
                      ++...-+|..+.|+.|++.|.++++..  ........+| ...+++++|+.|--+|.+.+.           .||-.+|.
T Consensus         6 ~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~   85 (859)
T KOG1241|consen    6 LLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPA   85 (859)
T ss_pred             HHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCH
Confidence            333345666678999999999988653  2333333444 677788899998888887765           78999999


Q ss_pred             HHHHHHHHHhHh
Q psy4090          95 EQCDVKEEKERE  106 (112)
Q Consensus        95 eqr~~IRnyv~~  106 (112)
                      |-|+.||++++.
T Consensus        86 e~reqVK~~il~   97 (859)
T KOG1241|consen   86 EIREQVKNNILR   97 (859)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999864

>KOG2023|consensus

Probab=90.99  E-value=0.52  Score=42.18  Aligned_cols=83  Identities=18%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHh--ccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHHH
Q psy4090          23 ITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTIL--EYSSNQQTKFYALQILEQVIKTRWKALPREQCDVK  100 (112)
Q Consensus        23 v~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL--~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~I  100 (112)
                      +.++-++++.-.+|+...|+.++..|++|+..||.=-..-+||  -.|.+..+|-.|=-+|.+-|+-+|+.+|.+....|
T Consensus        12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yi   91 (885)
T KOG2023|consen   12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYI   91 (885)
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHH
Confidence            3445555555556666789999999999999999988888888  55666777888888999999999999999888877


Q ss_pred             HHHhH
Q psy4090         101 EEKER  105 (112)
Q Consensus       101 Rnyv~  105 (112)
                      |.-+.
T Consensus        92 Ks~~l   96 (885)
T KOG2023|consen   92 KSECL   96 (885)
T ss_pred             HHHHH
Confidence            76543

>KOG1993|consensus

Probab=86.16  E-value=1.5  Score=39.84  Aligned_cols=78  Identities=15%  Similarity=0.279  Sum_probs=63.1

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHh-ccCchHHHHHHHHHHHHHHHhhccc-----CCCHHHHHHHHH
Q psy4090          29 IVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTIL-EYSSNQQTKFYALQILEQVIKTRWK-----ALPREQCDVKEE  102 (112)
Q Consensus        29 vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL-~~S~~~~tk~fALqiLe~~I~~~W~-----~Lp~eqr~~IRn  102 (112)
                      +.++.-+|...-++-|+.-|.+-+..|...+....|. +.+.+-.+|..|.--+.+-|.+.|.     .||+|+|.-||.
T Consensus         5 ~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~   84 (978)
T KOG1993|consen    5 VLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRC   84 (978)
T ss_pred             HHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHH
Confidence            3344334444468999999999999999999877776 7777788999999999999999995     689999999997


Q ss_pred             HhHh
Q psy4090         103 KERE  106 (112)
Q Consensus       103 yv~~  106 (112)
                      -+.+
T Consensus        85 ~Ll~   88 (978)
T KOG1993|consen   85 NLLL   88 (978)
T ss_pred             HHHH
Confidence            6543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=83.80  E-value=3.4  Score=25.48  Aligned_cols=58  Identities=16%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHH
Q psy4090          23 ITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQIL   81 (112)
Q Consensus        23 v~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiL   81 (112)
                      ...++.++..+.+++..-|..|=..|..++ +|+++..+...|..+.+..++.-|...|
T Consensus        30 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   30 PEAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence            345555665554444445777777777765 4667777777777776666676666554

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=83.80  E-value=10  Score=26.52  Aligned_cols=20  Identities=25%  Similarity=0.539  Sum_probs=16.7

Q ss_pred             CchHHHHHHHHHHHHHHHhh
Q psy4090          68 SSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        68 S~~~~tk~fALqiLe~~I~~   87 (112)
                      +.+|.+.++||.+|+.+++.
T Consensus        53 ~~~~~vq~~aL~lld~lvkN   72 (140)
T PF00790_consen   53 HGNPNVQLLALTLLDALVKN   72 (140)
T ss_dssp             TSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHc
Confidence            37888889999988888885

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=83.02  E-value=11  Score=25.05  Aligned_cols=51  Identities=20%  Similarity=0.246  Sum_probs=29.3

Q ss_pred             CHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090          22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        22 dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~   87 (112)
                      |...+..+|+..+......+..+..+...+               .++++.+.+.||.+||.+++.
T Consensus        17 ~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl---------------~~~~~~~~lkaL~lLe~lvkN   67 (115)
T cd00197          17 DWPLIMEICDLINETNVGPKEAVDAIKKRI---------------NNKNPHVVLKALTLLEYCVKN   67 (115)
T ss_pred             CHHHHHHHHHHHHCCCccHHHHHHHHHHHh---------------cCCcHHHHHHHHHHHHHHHHH
Confidence            566777777777654322233333332222               233677777777777777776

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=82.72  E-value=10  Score=26.96  Aligned_cols=53  Identities=19%  Similarity=0.219  Sum_probs=34.1

Q ss_pred             cCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090          20 KLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        20 ~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~   87 (112)
                      .-|......+|+......... +.|-+.|..             =| ++.||++.++||++|+.+++.
T Consensus        16 ~~dw~~ileicD~In~~~~~~-k~a~rai~k-------------rl-~~~n~~v~l~AL~LLe~~vkN   68 (139)
T cd03567          16 EEDWEAIQAFCEQINKEPEGP-QLAVRLLAH-------------KI-QSPQEKEALQALTVLEACMKN   68 (139)
T ss_pred             CCCHHHHHHHHHHHHcCCccH-HHHHHHHHH-------------HH-cCCCHHHHHHHHHHHHHHHHH
Confidence            347888888888875432222 233333321             11 377888899999999999885

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
3gb8_A	1071	Crystal Structure Of Crm1SNURPORTIN-1 Complex Lengt		1e-34
3gjx_A	1073	Crystal Structure Of The Nuclear Export Complex Crm		1e-34
3m1i_C	1049	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-21
3vyc_A	1033	Crystal Structure Of Unliganded Saccharomyces Cerev		3e-21
4hb3_C	1023	Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked		3e-21
4hax_C	1023	Crystal Structure Of Crm1 Inhibitor Ratjadone A In		3e-21
4haw_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		3e-21
4hat_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		3e-21
4gpt_C	1060	Crystal Structure Of Kpt251 In Complex With Crm1-ra		3e-21
4hb2_C	1023	Crystal Structure Of Crm1-ran-ranbp1 Length = 1023		3e-21
4hb0_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		3e-21
4hb4_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		3e-21
4haz_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		3e-21
4hay_C	1023	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		3e-21
4fgv_A	1086	Crystal Structure Of Free Crm1 (crystal Form 1) Len		2e-18

>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex Length = 1071

Iteration: 1
 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 73/87 (83%)
Query: 12  KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
           ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct: 14  RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73
Query: 72  QTKFYALQILEQVIKTRWKALPREQCD 98
            TK+Y LQILE VIKTRWK LPR QC+
Sbjct: 74  NTKYYGLQILENVIKTRWKILPRNQCE 100

>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1- Snurportin1-Rangtp Length = 1073

Iteration: 1
 Score =  140 bits (354), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 73/87 (83%)
Query: 12  KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
           ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct: 16  RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 75
Query: 72  QTKFYALQILEQVIKTRWKALPREQCD 98
            TK+Y LQILE VIKTRWK LPR QC+
Sbjct: 76  NTKYYGLQILENVIKTRWKILPRNQCE 102

>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 1049

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 6  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88

>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae Crm1 (Xpo1p) Length = 1033

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 4  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 63
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 64 KFIALSILDKLITRKWKLLPNDH 86

>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In Excess Crm1 Inhibitor Leptomycin B Length = 1023

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 6  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88

>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex With Crm1(k579a)-ran-ranbp1 Length = 1023

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 6  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88

>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548a)-ran-ranbp1 Length = 1023

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 6  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88

>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1- Ran-ranbp1 Length = 1023

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 6  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88

>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 1060

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 6  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88

>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1 Length = 1023

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 6  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88

>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1 Length = 1023

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 6  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88

>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(537dltvk541/glceq)-ran-ranbp1 Length = 1023

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 6  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88

>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1 Length = 1023

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 6  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88

>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548e,k579q)-ran-ranbp1 Length = 1023

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
          +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q+
Sbjct: 6  ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
          KF AL IL+++I  +WK LP + 
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88

>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1) Length = 1086

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 48/72 (66%)
Query: 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVI 85
          LD  V   Y G G +QKAAQ  L   KE PDAW  VD IL  ++ +QTKF ALQ+L+ VI
Sbjct: 17 LDATVRAFYEGRGEQQKAAQAALNQFKEDPDAWLMVDEILSRATYEQTKFLALQVLDNVI 76
Query: 86 KTRWKALPREQC 97
           TRWK LPREQC
Sbjct: 77 MTRWKVLPREQC 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	1e-26
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	2e-26
2x1g_F	971	Cadmus; transport protein, developmental protein,	4e-18
2x19_B	963	Importin-13; nuclear transport, protein transport;	2e-16
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	2e-16
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073

 Score =  101 bits (253), Expect = 1e-26
 Identities = 63/86 (73%), Positives = 72/86 (83%)

Query: 13  KLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQ 72
           +LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N  
Sbjct: 17  QLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMN 76

Query: 73  TKFYALQILEQVIKTRWKALPREQCD 98
           TK+Y LQILE VIKTRWK LPR QC+
Sbjct: 77  TKYYGLQILENVIKTRWKILPRNQCE 102

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049

 Score =  101 bits (251), Expect = 2e-26
 Identities = 42/86 (48%), Positives = 60/86 (69%)

Query: 13 KLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQ 72
           +LDF+  LDI LLD +V   Y G GV+QK AQE+LT  +++PDAW + D IL++S+N Q
Sbjct: 5  GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQ 64

Query: 73 TKFYALQILEQVIKTRWKALPREQCD 98
          +KF AL IL+++I  +WK LP +   
Sbjct: 65 SKFIALSILDKLITRKWKLLPNDHRI 90

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971

 Score = 77.4 bits (189), Expect = 4e-18
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query: 19 QKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYAL 78
          + +DI  L+  V   Y      Q    E LT  +  P AW     +++   +Q+ +F+  
Sbjct: 2  EPIDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGA 61

Query: 79 QILEQVIKTRWKALPREQCD 98
            L   +   W  +P E  +
Sbjct: 62 ITLHSKLMKHWHEVPPENRE 81

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963

 Score = 72.6 bits (177), Expect = 2e-16
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 6  PPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQK-AAQEVLTALKEHPDAWTRVDTI 64
                   LDF     +  ++  +  +Y    +E K  AQ+ L   +  P AW     +
Sbjct: 10 AAGAGAAPALDF----TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQL 65

Query: 65 LEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
          L+     + +++    L   I   W  +P +Q +
Sbjct: 66 LQPDKVPEIQYFGASALHIKISRYWSDIPTDQYE 99

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980

 Score = 72.6 bits (177), Expect = 2e-16
 Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 4/82 (4%)

Query: 21 LDITLLDNIVECMYTGMG--VEQKAAQEVLTALKEHPDAWTRVDTIL--EYSSNQQTKFY 76
          +    ++N VE         + ++ A + + +L+     W     I   +      T+  
Sbjct: 3  MSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLI 62

Query: 77 ALQILEQVIKTRWKALPREQCD 98
           LQ L + ++         +  
Sbjct: 63 CLQTLSEKVREWNNESNLLELQ 84

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204

 Score = 60.4 bits (145), Expect = 3e-12
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 26 LDNIVECMYTGMGVEQ--KAAQEVLTALKEHPDAWTRVD-TILEYSSNQQTKFYALQILE 82
          L   V  M      ++    A +     KE           + E +     + + LQILE
Sbjct: 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILE 72

Query: 83 QVIKTRWKALPREQCD 98
           V+K RW  + R +  
Sbjct: 73 HVVKFRWNGMSRLEKV 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 41/130 (31%)

Query: 8   NEQFKKLL---DFNQKLDITLLDNI----------VEC---MYTGMGVEQKAAQEVLTAL 51
             + ++LL    +   L +  L N+          + C   + T         ++V   L
Sbjct: 231 QAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTT-------RFKQVTDFL 281

Query: 52  KEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDV------------ 99
                A T     L++ S   T      +L + +  R + LPRE                
Sbjct: 282 ----SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 100 KEEKEREQNW 109
           ++      NW
Sbjct: 338 RDGLATWDNW 347

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.89
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.86
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.79
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.64
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.62
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.42
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.39
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.94
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.81
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.71
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.69
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.07
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	88.59
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	83.62
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	83.11
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	82.3
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	81.88
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	81.31

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.89  E-value=6e-24  Score=188.53  Aligned_cols=104  Identities=62%  Similarity=0.998  Sum_probs=92.1

Q ss_pred             CcCCCChHHHHHhhcccccCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHH
Q psy4090           2 ATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQIL   81 (112)
Q Consensus         2 ~~~~~~~~~~~~lld~~~~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiL   81 (112)
                      |+++.+ +||+.||||++++||+.||++|.++|+|++++|++|+++|.+||.+|++|..|..||+.|+++++||||+++|
T Consensus         7 ~~~~~~-~~~~~~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L   85 (1073)
T 3gjx_A            7 MTMLAD-HAARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQIL   85 (1073)
T ss_dssp             --------CCCCCCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHhhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            677788 8999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccCCCHHHHHHHHHHhHh
Q psy4090          82 EQVIKTRWKALPREQCDVKEEKERE  106 (112)
Q Consensus        82 e~~I~~~W~~Lp~eqr~~IRnyv~~  106 (112)
                      ++.|+++|+.||+++|.+||+++.+
T Consensus        86 ~~~I~~~W~~L~~e~~~~LR~~Ll~  110 (1073)
T 3gjx_A           86 ENVIKTRWKILPRNQCEGIKKYVVG  110 (1073)
T ss_dssp             HHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhCCHHHHHHHHHHHHH
Confidence            9999999999999999999999975

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.86  E-value=8.8e-22  Score=173.58  Aligned_cols=97  Identities=43%  Similarity=0.775  Sum_probs=94.3

Q ss_pred             HHHHhhcccccCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc
Q psy4090          10 QFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRW   89 (112)
Q Consensus        10 ~~~~lld~~~~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W   89 (112)
                      +|+.||||++|+||+.||++|.++|+|+++.|++|+++|.+|+.+|++|..|..||+.|+++++||||+++|++.|+++|
T Consensus         2 ~~~~~l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W   81 (1023)
T 4hat_C            2 AMEGILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKW   81 (1023)
T ss_dssp             GGGGGGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHG
T ss_pred             chhHhhCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence            58999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHhHh
Q psy4090          90 KALPREQCDVKEEKERE  106 (112)
Q Consensus        90 ~~Lp~eqr~~IRnyv~~  106 (112)
                      +.+|+++|.+||+++.+
T Consensus        82 ~~L~~e~~~~Ir~~Ll~   98 (1023)
T 4hat_C           82 KLLPNDHRIGIRNFVVG   98 (1023)
T ss_dssp             GGSCHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHH
Confidence            99999999999999875

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.79  E-value=3.5e-19  Score=154.83  Aligned_cols=97  Identities=43%  Similarity=0.775  Sum_probs=94.0

Q ss_pred             HHHHhhcccccCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc
Q psy4090          10 QFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRW   89 (112)
Q Consensus        10 ~~~~lld~~~~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W   89 (112)
                      +|+.||||+.+.|++.|++++.++|+|+++.|++|++.|.+|+.+|++|..|..||+.|+++++||||+++|++.|+++|
T Consensus         2 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W   81 (1049)
T 3m1i_C            2 AMEGILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKW   81 (1049)
T ss_dssp             GGGGGGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTG
T ss_pred             hhhHhcCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhC
Confidence            68999999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHhHh
Q psy4090          90 KALPREQCDVKEEKERE  106 (112)
Q Consensus        90 ~~Lp~eqr~~IRnyv~~  106 (112)
                      ..+|+++|.+||+++.+
T Consensus        82 ~~l~~~~~~~ir~~ll~   98 (1049)
T 3m1i_C           82 KLLPNDHRIGIRNFVVG   98 (1049)
T ss_dssp             GGSCHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            99999999999999875

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.64  E-value=1.4e-16  Score=136.47  Aligned_cols=87  Identities=23%  Similarity=0.416  Sum_probs=72.5

Q ss_pred             cCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q psy4090          20 KLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDV   99 (112)
Q Consensus        20 ~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~   99 (112)
                      ++|++.|++++.++|+|+++.|++|+++|.+|+.+|++|..|..||+.+.++++||||+++|++.|+++|+.+|+++|.+
T Consensus         3 ~~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~   82 (971)
T 2x1g_F            3 PIDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREE   82 (971)
T ss_dssp             --------CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHH
T ss_pred             hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHH
Confidence            47899999999999998777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHh
Q psy4090         100 KEEKERE  106 (112)
Q Consensus       100 IRnyv~~  106 (112)
                      ||+++.+
T Consensus        83 ir~~ll~   89 (971)
T 2x1g_F           83 LKQKILE   89 (971)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999976

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.62  E-value=1.7e-15  Score=128.96  Aligned_cols=86  Identities=15%  Similarity=0.275  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q psy4090          21 LDITLLDNIVECMYT-GMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDV   99 (112)
Q Consensus        21 ~dv~~Ld~vv~~~y~-~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~   99 (112)
                      .|++.|++++.++|. ++++.|++|+++|.+|+.+|++|..|..||+.|.++++|+||+++|++.|+++|+.+|+++|.+
T Consensus        21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~  100 (963)
T 2x19_B           21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYES  100 (963)
T ss_dssp             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH
T ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHH
Confidence            689999999999665 4556799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHh
Q psy4090         100 KEEKERE  106 (112)
Q Consensus       100 IRnyv~~  106 (112)
                      ||+++.+
T Consensus       101 ir~~ll~  107 (963)
T 2x19_B          101 LKAQLFT  107 (963)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.42  E-value=5.4e-13  Score=118.73  Aligned_cols=84  Identities=21%  Similarity=0.201  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhCCC-h-HHHHHHHHHHHHHhcCCccHHHHHHHhc-cCchHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q psy4090          23 ITLLDNIVECMYTGM-G-VEQKAAQEVLTALKEHPDAWTRVDTILE-YSSNQQTKFYALQILEQVIKTRWKALPREQCDV   99 (112)
Q Consensus        23 v~~Ld~vv~~~y~~~-~-~~r~~A~~iL~~fk~~pdaw~~v~~IL~-~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~   99 (112)
                      ++.+.+++.++|+|+ + +.|++|++.|.+|+++|++|..|..+|. .+.++++||||+++|++.|+++|+.+|+++|.+
T Consensus        10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~   89 (1204)
T 3a6p_A           10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVY   89 (1204)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence            456889999999983 3 4699999999999999999999999996 888999999999999999999999999999999


Q ss_pred             HHHHhHh
Q psy4090         100 KEEKERE  106 (112)
Q Consensus       100 IRnyv~~  106 (112)
                      ||+++.+
T Consensus        90 Ir~~ll~   96 (1204)
T 3a6p_A           90 LKNSVME   96 (1204)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.39  E-value=9e-13  Score=115.74  Aligned_cols=83  Identities=14%  Similarity=0.284  Sum_probs=74.5

Q ss_pred             cCCHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHhcCCccHHHHHHHhccCc--hHHHHHHHHHHHHHHHhhcccCCCHH
Q psy4090          20 KLDITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILEYSS--NQQTKFYALQILEQVIKTRWKALPRE   95 (112)
Q Consensus        20 ~~dv~~Ld~vv~~~y~~~--~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~--~~~tk~fALqiLe~~I~~~W~~Lp~e   95 (112)
                      |+|++.+.++++..|+|+  ++.|++|+++|.+||++|++|..|..||..+.  ++++||||+++|++.|+    .+|++
T Consensus         2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e   77 (980)
T 3ibv_A            2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNE   77 (980)
T ss_dssp             -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTT
T ss_pred             CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChh
Confidence            788999999997767773  45799999999999999999999999998875  89999999999999999    69999


Q ss_pred             ----HHHHHHHHhHh
Q psy4090          96 ----QCDVKEEKERE  106 (112)
Q Consensus        96 ----qr~~IRnyv~~  106 (112)
                          ++.+||+++.+
T Consensus        78 ~~~~~~~~lr~~ll~   92 (980)
T 3ibv_A           78 SNLLELQMIRDSVWS   92 (980)
T ss_dssp             TSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH
Confidence                99999999875

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.94  E-value=3.5e-09  Score=89.48  Aligned_cols=85  Identities=16%  Similarity=0.190  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhc--cCchHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q psy4090          22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILE--YSSNQQTKFYALQILEQVIKTRWKALPREQCDV   99 (112)
Q Consensus        22 dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~--~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~   99 (112)
                      ++..|-+++...++|+++.|++|++.|.+++.+|+.|..+..|+.  .+.++.+|++|...|.+.|+++|..++++.|..
T Consensus        11 ~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~   90 (852)
T 4fdd_A           11 GLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDF   90 (852)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHH
T ss_pred             hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHH
Confidence            355666677777888778899999999999999999999999997  689999999999999999999999999999999


Q ss_pred             HHHHhHh
Q psy4090         100 KEEKERE  106 (112)
Q Consensus       100 IRnyv~~  106 (112)
                      ||+.+.+
T Consensus        91 ik~~ll~   97 (852)
T 4fdd_A           91 IKSECLN   97 (852)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9998864

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.81  E-value=1.6e-08  Score=87.14  Aligned_cols=83  Identities=11%  Similarity=0.191  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHh-ccCchHHHHHHHHHHHHHHHhhccc------CCCH
Q psy4090          22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTIL-EYSSNQQTKFYALQILEQVIKTRWK------ALPR   94 (112)
Q Consensus        22 dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL-~~S~~~~tk~fALqiLe~~I~~~W~------~Lp~   94 (112)
                      |++.|.+++....+|+.+.|  |++.|.+++.+|+.|..+..|+ +.+.++.+|++|+.+|.+.|+++|.      .+|+
T Consensus         3 d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~   80 (960)
T 1wa5_C            3 DLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA   80 (960)
T ss_dssp             HHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred             cHHHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCH
Confidence            45566667766555544445  9999999999999999999999 4556789999999999999999998      8999


Q ss_pred             HHHHHHHHHhHh
Q psy4090          95 EQCDVKEEKERE  106 (112)
Q Consensus        95 eqr~~IRnyv~~  106 (112)
                      ++|..||+.+.+
T Consensus        81 ~~k~~ik~~ll~   92 (960)
T 1wa5_C           81 NNVELIKKEIVP   92 (960)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998865

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.71  E-value=3.6e-08  Score=75.93  Aligned_cols=81  Identities=17%  Similarity=0.183  Sum_probs=71.8

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHhc--CCccHHHHHHHhccC-chHHHHHHHHHHHHHHHhhc-----------ccC
Q psy4090          26 LDNIVECMYTGMGVEQKAAQEVLTALKE--HPDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTR-----------WKA   91 (112)
Q Consensus        26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk~--~pdaw~~v~~IL~~S-~~~~tk~fALqiLe~~I~~~-----------W~~   91 (112)
                      |.+++..+++|+++.|++|++.|.+++.  .|+.|..+..+|..+ .++.+|.+|..+|.+.|+++           |..
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~   82 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA   82 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhc
Confidence            5677888888888889999999999998  599999999999766 48999999999999999876           689


Q ss_pred             CCHHHHHHHHHHhHh
Q psy4090          92 LPREQCDVKEEKERE  106 (112)
Q Consensus        92 Lp~eqr~~IRnyv~~  106 (112)
                      ++++.|..||+.+.+
T Consensus        83 l~~~~~~~ik~~ll~   97 (462)
T 1ibr_B           83 IDANARREVKNYVLQ   97 (462)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.69  E-value=3.2e-08  Score=82.00  Aligned_cols=86  Identities=9%  Similarity=0.103  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHHHH-hCCChHHHHHHHHHHHHHhcC--CccHHHHHHHhccC-chHHHHHHHHHHHHHHHhhc--------
Q psy4090          21 LDITLLDNIVECM-YTGMGVEQKAAQEVLTALKEH--PDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTR--------   88 (112)
Q Consensus        21 ~dv~~Ld~vv~~~-y~~~~~~r~~A~~iL~~fk~~--pdaw~~v~~IL~~S-~~~~tk~fALqiLe~~I~~~--------   88 (112)
                      +|...|.+++... ++|+++.|++|++.|.+++.+  |+.|..+..+|..+ .++.+|++|+.+|.+.|+++        
T Consensus         1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~   80 (861)
T 2bpt_A            1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF   80 (861)
T ss_dssp             CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHH
Confidence            3667888999898 888888899999999999986  99999999999765 68999999999999999766        


Q ss_pred             ---ccC-CCHHHHHHHHHHhHh
Q psy4090          89 ---WKA-LPREQCDVKEEKERE  106 (112)
Q Consensus        89 ---W~~-Lp~eqr~~IRnyv~~  106 (112)
                         |.. +|+++|..||+.+.+
T Consensus        81 ~~~~~~~l~~~~~~~ik~~ll~  102 (861)
T 2bpt_A           81 AQRWITQVSPEAKNQIKTNALT  102 (861)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHhHhhhCCHHHHHHHHHHHHH
Confidence               575 999999999988765

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.07  E-value=9.4e-06  Score=67.34  Aligned_cols=81  Identities=19%  Similarity=0.190  Sum_probs=69.8

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHhcC--CccHHHHHHHhccC-chHHHHHHHHHHHHHHHh-----------hcccC
Q psy4090          26 LDNIVECMYTGMGVEQKAAQEVLTALKEH--PDAWTRVDTILEYS-SNQQTKFYALQILEQVIK-----------TRWKA   91 (112)
Q Consensus        26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~--pdaw~~v~~IL~~S-~~~~tk~fALqiLe~~I~-----------~~W~~   91 (112)
                      |.+++....+|..+.|++|++.|.+++.+  |+.|..+..+|..+ .++.+|.+|..+|.+.|+           .+|..
T Consensus         3 l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~   82 (876)
T 1qgr_A            3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA   82 (876)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence            45667777777777899999999999988  99999998888654 579999999999999884           67999


Q ss_pred             CCHHHHHHHHHHhHh
Q psy4090          92 LPREQCDVKEEKERE  106 (112)
Q Consensus        92 Lp~eqr~~IRnyv~~  106 (112)
                      ++++.|..||+.+.+
T Consensus        83 l~~~~~~~ik~~ll~   97 (876)
T 1qgr_A           83 IDANARREVKNYVLH   97 (876)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999988765

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=88.59  E-value=3.2  Score=28.24  Aligned_cols=52  Identities=13%  Similarity=0.125  Sum_probs=31.8

Q ss_pred             CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090          21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        21 ~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~   87 (112)
                      -|....-.+|+..-..... -++|-+.|..-             | .+++|++.++||.+|+.+++.
T Consensus        21 ~dw~~ileicD~I~~~~~~-~k~a~rai~Kr-------------l-~~~n~~~ql~AL~LLe~~vkN   72 (140)
T 3ldz_A           21 EDWGLILDICDKVGQSRTG-PKDCLRSIMRR-------------V-NHKDPHVAMQALTLLGACVSN   72 (140)
T ss_dssp             CCHHHHHHHHHHHTTSTTH-HHHHHHHHHHH-------------H-TCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHCCCcC-HHHHHHHHHHH-------------H-cCCChHHHHHHHHHHHHHHHh
Confidence            4677777777776443222 23343433321             2 346788889999999988886

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=83.62  E-value=5.2  Score=27.69  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=24.4

Q ss_pred             HHHHHhcCCccHHHHHHHh----ccCchHHHHHHHHHHHHHHHhh
Q psy4090          47 VLTALKEHPDAWTRVDTIL----EYSSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        47 iL~~fk~~pdaw~~v~~IL----~~S~~~~tk~fALqiLe~~I~~   87 (112)
                      +-......++....+-..|    ..+.|+++.++||.+||.+++.
T Consensus        40 icD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkN   84 (157)
T 1elk_A           40 ICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKN   84 (157)
T ss_dssp             HHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444    2356788888888888888775

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=83.11  E-value=4.7  Score=27.79  Aligned_cols=52  Identities=23%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090          21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        21 ~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~   87 (112)
                      -|....-.+|+..-..... -+.|-+.|..             =| .++||++.++||.+|+.+++.
T Consensus        17 ~dw~~~leicD~I~~~~~~-~k~a~rai~k-------------rl-~~~n~~vql~AL~LLe~~vkN   68 (148)
T 1mhq_A           17 QDWSAIQNFCEQVNTDPNG-PTHAPWLLAH-------------KI-QSPQEKEALYALTVLEMCMNH   68 (148)
T ss_dssp             CCHHHHHHHHHHHHHSSHH-HHHHHHHHHH-------------HH-TCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCcc-HHHHHHHHHH-------------Hh-cCCCHHHHHHHHHHHHHHHHH
Confidence            3667777777776543322 2333333321             11 467899999999999999885

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=82.30  E-value=6.1  Score=27.35  Aligned_cols=52  Identities=21%  Similarity=0.276  Sum_probs=30.4

Q ss_pred             CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090          21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        21 ~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~   87 (112)
                      -|....-.+|+........-+ .|-+.|..             =| .++||++.++||.+|+.+++.
T Consensus        27 ~dw~~ileicD~I~~~~~~pk-~a~ral~k-------------rl-~~~n~~v~l~AL~LLe~cvkN   78 (149)
T 3g2s_A           27 LDWASINGFCEQLNEDFEGPP-LATRLLAH-------------KI-QSPQEWEAIQALTVLETCMKS   78 (149)
T ss_dssp             CCHHHHHHHHHHGGGSSSHHH-HHHHHHHH-------------HH-TCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHCCCCcHH-HHHHHHHH-------------HH-cCCCHHHHHHHHHHHHHHHHh
Confidence            366777777777554332222 23222221             11 267888888888888888774

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=81.88  E-value=6.4  Score=28.78  Aligned_cols=20  Identities=35%  Similarity=0.713  Sum_probs=17.3

Q ss_pred             CchHHHHHHHHHHHHHHHhh
Q psy4090          68 SSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        68 S~~~~tk~fALqiLe~~I~~   87 (112)
                      ++||++.++||.+||.+++.
T Consensus        56 ~~n~~v~l~aL~LLe~~vkN   75 (226)
T 3zyq_A           56 DKNPHVALYALEVMESVVKN   75 (226)
T ss_dssp             CSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            78888999999999988875

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=81.31  E-value=6.4  Score=27.75  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=17.3

Q ss_pred             cCchHHHHHHHHHHHHHHHhh
Q psy4090          67 YSSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        67 ~S~~~~tk~fALqiLe~~I~~   87 (112)
                      .++|+++.++||.+||.+++.
T Consensus        60 ~~~n~~vql~AL~LLd~~vkN   80 (171)
T 1juq_A           60 QSPQEWEALQALTVLEACMKN   80 (171)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHH
Confidence            357888889999999988885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	8e-05

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 8e-05
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 40 EQKAAQEVLTALKEHPDAWTRVDTILEY--SSNQQTKFYALQILEQVIKTRWKALPREQ 96
           Q+  Q+ L  L ++PD    +  +L    S ++ T+  +  IL+  +K  ++  P   
Sbjct: 27 IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	98.3
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.26
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.96
d1elka_	153	Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	87.69
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	85.83
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	82.41
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	81.03

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=1.8e-06  Score=69.57  Aligned_cols=83  Identities=12%  Similarity=0.227  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCc-hHHHHHHHHHHHHHHHhhcccC------CCH
Q psy4090          22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSS-NQQTKFYALQILEQVIKTRWKA------LPR   94 (112)
Q Consensus        22 dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~-~~~tk~fALqiLe~~I~~~W~~------Lp~   94 (112)
                      |++.+-++...-  .+.+.|++|++.|.++..+|+.+..+-.|+...+ ...+|..|+-.|.+.|+++|..      +|+
T Consensus         3 d~~~l~~ll~~s--~~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~   80 (959)
T d1wa5c_           3 DLETVAKFLAES--VIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA   80 (959)
T ss_dssp             HHHHHHHHHHHT--TSGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred             cHHHHHHHHHHC--CChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCH
Confidence            344444444432  2334799999999999999999999988886555 5679999999999999999975      999


Q ss_pred             HHHHHHHHHhHh
Q psy4090          95 EQCDVKEEKERE  106 (112)
Q Consensus        95 eqr~~IRnyv~~  106 (112)
                      +.|..||+.+.+
T Consensus        81 e~k~~Ik~~ll~   92 (959)
T d1wa5c_          81 NNVELIKKEIVP   92 (959)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=9.9e-07  Score=68.98  Aligned_cols=86  Identities=8%  Similarity=0.052  Sum_probs=71.4

Q ss_pred             CCHHHHHHHHHH-HhCCChHHHHHHHHHHHHHhcC--CccHHHHHHHhc-cCchHHHHHHHHHHHHHHHhhcc-------
Q psy4090          21 LDITLLDNIVEC-MYTGMGVEQKAAQEVLTALKEH--PDAWTRVDTILE-YSSNQQTKFYALQILEQVIKTRW-------   89 (112)
Q Consensus        21 ~dv~~Ld~vv~~-~y~~~~~~r~~A~~iL~~fk~~--pdaw~~v~~IL~-~S~~~~tk~fALqiLe~~I~~~W-------   89 (112)
                      +|...|.+++.. +.+|..+.|++|++.|.+++++  |+.+..+-.|+. .+.++.+|.+|+.+|.+.|+++|       
T Consensus         1 M~~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~   80 (861)
T d2bpta1           1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF   80 (861)
T ss_dssp             CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhH
Confidence            366778888866 5677777899999999999887  777777777774 56778999999999999999888       


Q ss_pred             -----cCCCHHHHHHHHHHhHh
Q psy4090          90 -----KALPREQCDVKEEKERE  106 (112)
Q Consensus        90 -----~~Lp~eqr~~IRnyv~~  106 (112)
                           +.++++.|..||+.+.+
T Consensus        81 ~~~~~~~i~~~~~~~ik~~ll~  102 (861)
T d2bpta1          81 AQRWITQVSPEAKNQIKTNALT  102 (861)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhhhHhcCCHHHHHHHHHHHHH
Confidence                 46899999999987764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.6e-06  Score=66.15  Aligned_cols=81  Identities=17%  Similarity=0.184  Sum_probs=68.0

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHhcC--CccHHHHHHHh-ccCchHHHHHHHHHHHHHHHhhc-----------ccC
Q psy4090          26 LDNIVECMYTGMGVEQKAAQEVLTALKEH--PDAWTRVDTIL-EYSSNQQTKFYALQILEQVIKTR-----------WKA   91 (112)
Q Consensus        26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~--pdaw~~v~~IL-~~S~~~~tk~fALqiLe~~I~~~-----------W~~   91 (112)
                      |-+++....+|+.+.|++|++.|.+++.+  |+....+-.|+ +.+.++.+|..|+-.|.+.|+++           |..
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~   82 (876)
T d1qgra_           3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA   82 (876)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhccccc
Confidence            45666777777778899999999999887  88888877777 55667789999999999999866           558


Q ss_pred             CCHHHHHHHHHHhHh
Q psy4090          92 LPREQCDVKEEKERE  106 (112)
Q Consensus        92 Lp~eqr~~IRnyv~~  106 (112)
                      +|++.|..||+.+.+
T Consensus        83 i~~~~k~~ik~~ll~   97 (876)
T d1qgra_          83 IDANARREVKNYVLH   97 (876)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.1e-05  Score=58.75  Aligned_cols=81  Identities=17%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHhcC--CccHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhc-----------ccC
Q psy4090          26 LDNIVECMYTGMGVEQKAAQEVLTALKEH--PDAWTRVDTILEY-SSNQQTKFYALQILEQVIKTR-----------WKA   91 (112)
Q Consensus        26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~--pdaw~~v~~IL~~-S~~~~tk~fALqiLe~~I~~~-----------W~~   91 (112)
                      |-++...+.+|+++.|++|++.|.++..+  |+.+..+-.||.. +..+.+|.+|+.+|.+.|+..           |..
T Consensus         2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~   81 (458)
T d1ibrb_           2 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA   81 (458)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhcc
Confidence            45677788888888999999999999776  8888888888854 456789999999999999765           568


Q ss_pred             CCHHHHHHHHHHhHh
Q psy4090          92 LPREQCDVKEEKERE  106 (112)
Q Consensus        92 Lp~eqr~~IRnyv~~  106 (112)
                      ++++.|..||+.+.+
T Consensus        82 l~~~~~~~i~~~ll~   96 (458)
T d1ibrb_          82 IDANARREVKNYVLQ   96 (458)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            899999999887654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.3e-08  Score=79.79  Aligned_cols=83  Identities=19%  Similarity=0.225  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhCC---ChHHHHHHHHHHHHHhcCCccHHHHHHHhcc--CchHHHHHHHHHHHHHHHhhcccCCCHHHHH
Q psy4090          24 TLLDNIVECMYTG---MGVEQKAAQEVLTALKEHPDAWTRVDTILEY--SSNQQTKFYALQILEQVIKTRWKALPREQCD   98 (112)
Q Consensus        24 ~~Ld~vv~~~y~~---~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~--S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~   98 (112)
                      +.|+++++.+-+.   +++.|++|++.|.+|+++|+.+..+..|+..  +.+..+|.+|.-+|.+.|+++|..+|++.|.
T Consensus         8 ~~l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~   87 (888)
T d1qbkb_           8 QGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTD   87 (888)
T ss_dssp             TTHHHHHHHHTTCCHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence            3456666665443   3356999999999999999999988888864  4567899999999999999999999999999


Q ss_pred             HHHHHhHh
Q psy4090          99 VKEEKERE  106 (112)
Q Consensus        99 ~IRnyv~~  106 (112)
                      .||+-+..
T Consensus        88 ~Ik~~ll~   95 (888)
T d1qbkb_          88 FIKSECLN   95 (888)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            99998764

>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Tom1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.69  E-value=1.2  Score=29.16  Aligned_cols=45  Identities=18%  Similarity=0.183  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcCCccHHHHHHHh----ccCchHHHHHHHHHHHHHHHhh
Q psy4090          43 AAQEVLTALKEHPDAWTRVDTIL----EYSSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        43 ~A~~iL~~fk~~pdaw~~v~~IL----~~S~~~~tk~fALqiLe~~I~~   87 (112)
                      ..-++-.....+|+....+-..|    ..++||++.++||.+||.+++.
T Consensus        32 ~il~icD~In~~~~~~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkN   80 (153)
T d1elka_          32 LNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKN   80 (153)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            33334444444555444433333    3567899999999999999885

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.83  E-value=1.3  Score=28.81  Aligned_cols=53  Identities=23%  Similarity=0.305  Sum_probs=31.8

Q ss_pred             cCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090          20 KLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        20 ~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~   87 (112)
                      .-|....-.+|+..-...... +.|-+.|.            .-|  .+.+|++.++||.+|+.+++.
T Consensus        23 ~~dw~~ileicD~I~~~~~~~-k~a~r~l~------------krl--~~~~~~~~l~aL~LLe~~vkN   75 (145)
T d1ujka_          23 ELDWASINGFCEQLNEDFEGP-PLATRLLA------------HKI--QSPQEWEAIQALTVLETCMKS   75 (145)
T ss_dssp             SCCHHHHHHHHHHHTSSTTHH-HHHHHHHH------------HHH--TCSSHHHHHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHhCCCccH-HHHHHHHH------------HHH--cCCCHHHHHHHHHHHHHHHHH
Confidence            346667777776654332221 23333332            111  467888999999999998885

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.41  E-value=3.3  Score=26.57  Aligned_cols=53  Identities=19%  Similarity=0.226  Sum_probs=33.5

Q ss_pred             cCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090          20 KLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        20 ~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~   87 (112)
                      .-|....-++|+..-......+ .|-+.|..=             | .+.+|++.++||.+|+.+++.
T Consensus        20 ~~dw~~il~icD~I~~~~~~~k-~a~ral~kr-------------l-~~~n~~v~l~aL~LLd~~vkN   72 (145)
T d1dvpa1          20 EPDWPSILLICDEINQKDVTPK-NAFAAIKKK-------------M-NSPNPHSSCYSLLVLESIVKN   72 (145)
T ss_dssp             SCCHHHHHHHHHHHHTTSSCHH-HHHHHHHHH-------------H-TCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCccHH-HHHHHHHHH-------------H-cCCCHHHHHHHHHHHHHHHHc
Confidence            4578888888887654322223 333333311             1 346788899999999988885

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.03  E-value=3  Score=26.87  Aligned_cols=53  Identities=25%  Similarity=0.320  Sum_probs=33.9

Q ss_pred             cCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090          20 KLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT   87 (112)
Q Consensus        20 ~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~   87 (112)
                      .-|....-.+|+..-......+ .|-+.|.            ..|  .+.+|++.++||.+|+.+++.
T Consensus        16 ~~dw~~il~icD~I~~~~~~~k-~a~ral~------------krl--~~~n~~~~l~aL~LLe~~vkN   68 (143)
T d1mhqa_          16 EQDWSAIQNFCEQVNTDPNGPT-HAPWLLA------------HKI--QSPQEKEALYALTVLEMCMNH   68 (143)
T ss_dssp             SCCHHHHHHHHHHHHHSSHHHH-HHHHHHH------------HHH--TCSSHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHcCCCCHH-HHHHHHH------------HHH--cCCCHHHHHHHHHHHHHHHHH
Confidence            3577777788877654333222 3333332            111  456888999999999999885