Psyllid ID: psy4093

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
Protein Sequence
MLSLWKNRPSLNFWEESGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFCTERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDDKTLAMSVPPPRRSTS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccEEEccccccccccccEEEcccccccccccccccccccHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHcccEEEEEEEccccccccHHHHHHHHHHHHHccEEEEcccccccccccccEEccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHccccccccEcccccccccEEccccccccEEEEccccccccEEEEEccccccccHccccccccHccccccccccccHHHcccccccccccHHHHHHHHHHHHccEEEEEccHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccEEEEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccEEEEEEEEccccccccccEEEEcccccccccccccccccccHHHHHccccccEEEEEccEcccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHccEEEEcHHHcccccccHHHHHHHHHHHccEEEEEcccEcccccHHHHHHccccEccccccccccccc
Coil and Loop (DISEMBL)
mlslwknrpslnfweesgqfegdimlegpertgvissidrwpgglipyyidddhfcternfkkyppseitdfgvgydfdsvMHYSRKAfskngddtivPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVhsiagpgplqEIQRISDELGEDRGVFLIAQLSCQgnlidekytqVGFKAITLELKKYLcnnqvlpkcdndVQETLKLAQSFPGLIAGLVcqapsvlasnpgllqltpgihlnqtgdnkgqqyngptdvitlrgadlgvvgrgitqapdpVEAARRYKEVMWEAYEQRLKKEnsrivtpfetrkadvkcRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFlrsrngwfspilssfslrfrddktlamsvppprrsts
Flexible Loop (DISEMBL)
mlslwknrpslnfweesGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFCTERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLgvvgrgitqapdpvEAARRYKEVMWEAYEQrlkkensrivtpfetrkadvkcriSSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQheflrsrngwfsPILSSFslrfrddktlamsvppprrsts
Low Complexity Region (SEG)
MLSLWKNRPSLNFWEESGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFCTERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDDKTLAMSVPPPRRSTS
Disordered region (IsUnstruct)
**********LNFWEESGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFCTERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTG****QQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF******************
Disordered Region (DISOPRED)
*******RPSLNFWEESGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFCTERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQR******EDRGVFLIAQLSCQG**********************LCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ*****ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL*******************CRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDDKTLAMSV*PP*****
Disordered Region (DISEMBL)
MLSLWKNRPSLNFWEESGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFCTERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDDKTLAM**********
Disordered Region (DISPRO)
*LSLWKNRPSLNFWEESGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFCTERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDDKTLAMSV********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSLWKNRPSLNFWEESGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFCTERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFxxxxxxxxxxxxxxxxxxxxxNGWFSPILSSFSLRFRDDKTLAMSVPPPRRSTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	434	2.2.26 [Sep-21-2011]
Q01637	493	Uridine 5'-monophosphate	yes	N/A	0.387	0.340	0.393	9e-30
Q5R514	480	Uridine 5'-monophosphate	yes	N/A	0.370	0.335	0.345	2e-23
P11172	480	Uridine 5'-monophosphate	yes	N/A	0.370	0.335	0.345	2e-23
P09556	478	Uridine 5'-monophosphate	yes	N/A	0.368	0.334	0.336	4e-23
P31754	480	Uridine 5'-monophosphate	yes	N/A	0.370	0.335	0.329	2e-21
P13439	481	Uridine 5'-monophosphate	yes	N/A	0.370	0.334	0.324	2e-20
Q42586	476	Uridine 5'-monophosphate	yes	N/A	0.373	0.340	0.311	1e-19
Q4VWW3	274	Orotidine 5'-phosphate de	N/A	N/A	0.382	0.605	0.291	7e-19
Q1E9A1	274	Orotidine 5'-phosphate de	N/A	N/A	0.382	0.605	0.291	7e-19
Q25566	494	Uridine 5'-monophosphate	N/A	N/A	0.382	0.336	0.316	8e-19

>sp|Q01637|UMPS_DROME Uridine 5'-monophosphate synthase OS=Drosophila melanogaster GN=r-l PE=2 SV=2

 Score =  131 bits (330), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 109/201 (54%), Gaps = 33/201 (16%)

Query: 115 KLADIGAAVGHQF----RLIGEWAHLVTVHSIAGPGPLQEIQRISDE--LGEDRGVFLIA 168
           K ADIG  V  Q+      I  WA LVT H++ G   LQ ++    E   G++RGVFL+A
Sbjct: 320 KFADIGNTVSLQYGKGIYKISSWADLVTAHTLPGRSILQGLKAGLGEGGAGKERGVFLLA 379

Query: 169 QLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLV 228
           ++S  GNLID KY +               N+  +     DV             +AG+V
Sbjct: 380 EMSASGNLIDAKYKE---------------NSNKIATEGADVD-----------FVAGVV 413

Query: 229 CQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDP 288
           CQ+    A  PGLLQLTPG+ +++  D  GQQY  P  V+  RGAD+GVVGRGI +A  P
Sbjct: 414 CQSSDAFAF-PGLLQLTPGVKIDEGVDQLGQQYQSPEHVVKERGADIGVVGRGILKASSP 472

Query: 289 VEAARRYKEVMWEAYEQRLKK 309
            +AA+ Y++ +W AY+ R+ K
Sbjct: 473 KQAAQTYRDRLWAAYQDRVAK 493

Drosophila melanogaster (taxid: 7227)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 3

>sp|Q5R514|UMPS_PONAB Uridine 5'-monophosphate synthase OS=Pongo abelii GN=UMPS PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)

Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 314 KFADIGNTVKKQYEGGVFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 371

Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 372 SSTGSLATGDYTRAA----------------------------VRMAEEHSEFVVGFI-- 401

Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 402 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADCLE 461

Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 462 AAEMYRKAAWEAYLSRL 478

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|P11172|UMPS_HUMAN Uridine 5'-monophosphate synthase OS=Homo sapiens GN=UMPS PE=1 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)

Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 314 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 371

Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 372 SSTGSLATGDYTRAA----------------------------VRMAEEHSEFVVGFI-- 401

Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 402 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 461

Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 462 AAEMYRKAAWEAYLSRL 478

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|P09556|UMPS_DICDI Uridine 5'-monophosphate synthase OS=Dictyostelium discoideum GN=pyr56 PE=1 SV=2

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 98/199 (49%), Gaps = 39/199 (19%)

Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V +QF      I +WA +VTVH +AG   +   +    E G   G+ L+AQ+
Sbjct: 313 KFADIGNTVKYQFENGVYKISKWADMVTVHGVAGSSIVDGFKSGLKEYGS--GLLLLAQM 370

Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S +G+L    YT                  Q++   +N+ +E +           GL+CQ
Sbjct: 371 SSKGSLCVGDYT-----------------TQMIEMANNNKEEVM-----------GLICQ 402

Query: 231 A--PSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDP 288
              PS+     GL+ +TPG+  N TGD  GQQYN P  +I  +  D+ +VGRGI Q+ DP
Sbjct: 403 ERLPSM---TDGLVLMTPGVQFNSTGDAMGQQYNTPEYIIKEKNTDVIIVGRGIYQSNDP 459

Query: 289 VEAARRYKEVMWEAYEQRL 307
              A +Y+   WE Y+ + 
Sbjct: 460 KSVANKYRTAAWETYQSKF 478

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|P31754|UMPS_BOVIN Uridine 5'-monophosphate synthase OS=Bos taurus GN=UMPS PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 95/197 (48%), Gaps = 36/197 (18%)

Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H++ G G ++ ++ +   L   R   L+A++
Sbjct: 314 KFADIGNTVKKQYEGGVFKIASWADLVNAHAVPGSGVVKGLEEVGLPL--HRACLLVAEM 371

Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G L    YT+                          VQ   + ++   G I+G    
Sbjct: 372 SSAGTLATGSYTEAA------------------------VQMAEEHSEFVIGFISG---- 403

Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
             S ++  P  L LTPG+ L   GDN GQQY+ P +VI  RG+D+ +VGRGI  + + +E
Sbjct: 404 --SRVSMKPEFLHLTPGVQLEAGGDNLGQQYHSPQEVIGKRGSDIIIVGRGIIASANQLE 461

Query: 291 AARRYKEVMWEAYEQRL 307
           AA+ Y++  WEAY  RL
Sbjct: 462 AAKMYRKAAWEAYLSRL 478

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|P13439|UMPS_MOUSE Uridine 5'-monophosphate synthase OS=Mus musculus GN=Umps PE=2 SV=3

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 93/197 (47%), Gaps = 36/197 (18%)

Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA +V  H + G G ++ +Q +   L   R   LIA++
Sbjct: 314 KFADIGNTVKKQYESGTFKIASWADIVNAHVVPGSGVVKGLQEVGLPL--HRACLLIAEM 371

Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              + +A+     + G +  
Sbjct: 372 SSAGSLATGNYTKAA----------------------------VGMAEEHCEFVIGFI-- 401

Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GD+ GQQYN P +VI  RG+D+ +VGRGI  A + +E
Sbjct: 402 SGSRVSMKPEFLHLTPGVQLETGGDHLGQQYNSPQEVIGKRGSDVIIVGRGILAAANRLE 461

Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 462 AAEMYRKAAWEAYLSRL 478

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|Q42586|UMPS_ARATH Uridine 5'-monophosphate synthase OS=Arabidopsis thaliana GN=PYRE-F PE=2 SV=2

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 37/199 (18%)

Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I EWA ++  H I+GPG +  ++      G  RG+ L+A++
Sbjct: 305 KFADIGNTVTMQYEGGIFKILEWADIINAHVISGPGIVDGLKLKGMPRG--RGLLLLAEM 362

Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  GNL    YT                               +K+A +    + G +  
Sbjct: 363 SSAGNLATGDYTAAA----------------------------VKIADAHSDFVMGFISV 394

Query: 231 APSVLASN---PGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPD 287
            P+        P ++  TPG+ + + GD  GQQYN P  VIT RG+D+ +VGRGI +A +
Sbjct: 395 NPASWKCGYVYPSMIHATPGVQMVKGGDALGQQYNTPHSVITERGSDIIIVGRGIIKAEN 454

Query: 288 PVEAARRYKEVMWEAYEQR 306
           P E A  Y+   W AY ++
Sbjct: 455 PAETAHEYRVQGWNAYLEK 473

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|Q4VWW3|PYRF_COCPS Orotidine 5'-phosphate decarboxylase OS=Coccidioides posadasii (strain RMSCC 757 / Silveira) GN=URA3 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 43/209 (20%)

Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDE----LGEDRGVFL 166
           K  DIG  V  Q+      I EWAH+V    + GPG +  + +++         DRG+ +
Sbjct: 95  KFVDIGNTVQKQYHGGALHISEWAHIVNATVLPGPGIIDALAQVASAPDFPHASDRGLLI 154

Query: 167 IAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAG 226
           +A ++ +G+L   +YT++                            +++LA+ + G + G
Sbjct: 155 LATMTSKGSLATGQYTEL----------------------------SVELARKYKGFVLG 186

Query: 227 LVCQ------APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGR 280
            V          +  A +   +  T G++L   GD  GQQY  P   I   GAD  + GR
Sbjct: 187 FVASRSLEGVETAGKADDEDFVLFTTGVNLASKGDALGQQYQTPESAIG-GGADFIISGR 245

Query: 281 GITQAPDPVEAARRYKEVMWEAYEQRLKK 309
           GI  APDPV+AARRY++  W+AY +R+ +
Sbjct: 246 GIYAAPDPVDAARRYQKAGWDAYLKRVGR 274

Coccidioides posadasii (strain RMSCC 757 / Silveira) (taxid: 443226)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|Q1E9A1|PYRF_COCIM Orotidine 5'-phosphate decarboxylase OS=Coccidioides immitis (strain RS) GN=URA3 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 43/209 (20%)

Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDE----LGEDRGVFL 166
           K  DIG  V  Q+      I EWAH+V    + GPG +  + +++         DRG+ +
Sbjct: 95  KFVDIGNTVQKQYHGGALHISEWAHIVNATVLPGPGIIDALAQVASAPDFPHASDRGLLI 154

Query: 167 IAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAG 226
           +A ++ +G+L   +YT++                            +++LA+ + G + G
Sbjct: 155 LATMTSKGSLATGQYTEL----------------------------SVELARKYKGFVLG 186

Query: 227 LVCQ------APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGR 280
            V          +  A +   +  T G++L   GD  GQQY  P   I   GAD  + GR
Sbjct: 187 FVASRSLEGVETAGKADDEDFVLFTTGVNLASKGDALGQQYQTPESAIG-GGADFIISGR 245

Query: 281 GITQAPDPVEAARRYKEVMWEAYEQRLKK 309
           GI  APDPV+AARRY++  W+AY +R+ +
Sbjct: 246 GIYAAPDPVDAARRYQKAGWDAYLKRVGR 274

Coccidioides immitis (strain RS) (taxid: 246410)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|Q25566|UMPS_NAEGR Uridine 5'-monophosphate synthase OS=Naegleria gruberi GN=UMP PE=3 SV=1

 Score = 95.1 bits (235), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 36/202 (17%)

Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRIS---DELGEDRGVFLI 167
           KLADIG  V  Q+      I +W+ L   H ++G     +  + S   + + E RG+ LI
Sbjct: 322 KLADIGQVVKQQYARGPFKIAQWSDLCNSHLVSGGSATVKALKESLKEENITEPRGLLLI 381

Query: 168 AQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL 227
           AQ+S +G             A T E  K               QE LK+A   P  ++G 
Sbjct: 382 AQMSTEG-------------ATTGESTK---------------QEALKVALENPDFVSGF 413

Query: 228 VCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPD 287
           +CQ+  +       L  TPG+ L+  GD+ GQQYN P  V+  +  D+ +VGRGI    +
Sbjct: 414 ICQS-KLRDDLDQFLYCTPGVRLDVKGDSLGQQYNSPEYVVCEKKCDVIIVGRGIYHDKE 472

Query: 288 PVEAARRYKEVMWEAYEQRLKK 309
              AA+ Y+++ WEAY++R+++
Sbjct: 473 RQNAAKLYRKLGWEAYQKRIQQ 494

Naegleria gruberi (taxid: 5762)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
193617801	478	PREDICTED: uridine 5'-monophosphate synt	0.377	0.343	0.428	1e-39
270005386	466	hypothetical protein TcasGA2_TC007436 [T	0.373	0.347	0.431	4e-32
156548220	469	PREDICTED: uridine 5'-monophosphate synt	0.377	0.349	0.415	5e-32
261335924	474	putative uridine 5'-monophosphate syntha	0.373	0.341	0.401	1e-29
312371945	1541	hypothetical protein AND_20802 [Anophele	0.380	0.107	0.419	2e-29
195054431	492	GH23167 [Drosophila grimshawi] gi|193895	0.387	0.341	0.393	3e-29
242017779	478	conserved hypothetical protein [Pediculu	0.449	0.407	0.319	5e-29
322795292	490	hypothetical protein SINV_06234 [Solenop	0.384	0.340	0.374	1e-28
322787283	490	hypothetical protein SINV_11550 [Solenop	0.373	0.330	0.383	1e-28
195452922	494	GK13081 [Drosophila willistoni] gi|19416	0.387	0.340	0.383	4e-28

>gi|193617801|ref|XP_001947885.1| PREDICTED: uridine 5'-monophosphate synthase-like isoform 1 [Acyrthosiphon pisum] gi|328720817|ref|XP_003247136.1| PREDICTED: uridine 5'-monophosphate synthase-like isoform 2 [Acyrthosiphon pisum]

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/196 (42%), Positives = 121/196 (61%), Gaps = 32/196 (16%)

Query: 115 KLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGED---RGVFLIAQLS 171
           K+ADIG  V  Q++ +  WA LVTVHS++G   L+ IQ + +E  +    RGVF++A+LS
Sbjct: 309 KMADIGNTVKLQYKKLVNWADLVTVHSVSGGMMLKGIQEVINENTDSLDSRGVFIVAELS 368

Query: 172 CQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQA 231
           C GNLI E+Y                            ++ET+K+A+ +  ++AGLVCQ+
Sbjct: 369 CNGNLISEQY----------------------------IKETVKIAEEYKDIVAGLVCQS 400

Query: 232 PSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEA 291
           P V++S P LLQLTPG+++    DN GQQY  P+D+I  +GAD+ VVGRGI Q  +P EA
Sbjct: 401 PDVISS-PSLLQLTPGVNIKNANDNLGQQYQSPSDIILTKGADIAVVGRGIYQDDNPAEA 459

Query: 292 ARRYKEVMWEAYEQRL 307
           A+ YKE +W  Y +R+
Sbjct: 460 AKLYKESLWNTYLERI 475

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005386|gb|EFA01834.1| hypothetical protein TcasGA2_TC007436 [Tribolium castaneum]

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 110/197 (55%), Gaps = 35/197 (17%)

Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LVT HS+ G G L  +++ S  L  +RGVFL+AQ 
Sbjct: 299 KFADIGQTVQLQYSKGLYQISSWASLVTAHSLMGKGVLDGLKQ-SPGL-TNRGVFLLAQT 356

Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S   +LID  Y                            V  T+KLA+ +  L+ G+VCQ
Sbjct: 357 SAAESLIDRSY----------------------------VDNTVKLARQYGDLVTGVVCQ 388

Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           +  +    PGL+QLTPG+HL   GDN  QQYN P  V+  RGAD+ VVGRG+TQA  P +
Sbjct: 389 S-VLFEDEPGLVQLTPGVHLKSVGDNLSQQYNTPEVVVMDRGADVAVVGRGVTQAASPGD 447

Query: 291 AARRYKEVMWEAYEQRL 307
            AR+YKEV+W AYE+R+
Sbjct: 448 EARKYKEVLWAAYEKRI 464

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548220|ref|XP_001607108.1| PREDICTED: uridine 5'-monophosphate synthase-like [Nasonia vitripennis]

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 36/200 (18%)

Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K  DIG  V +Q+R     I EWA L+TVH ++G G LQ I++    + EDRGVF++A++
Sbjct: 302 KFGDIGQTVSYQYRNGIYNIAEWADLITVHPVSGKGVLQGIKQGLHGISEDRGVFIVAEM 361

Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S +G L    Y                  + V    D+D             L +G VCQ
Sbjct: 362 SSEGALTTGNY----------------LTSAVSDSKDSD-------------LTSGFVCQ 392

Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
               +  + GL+QLTPG+ L ++ DN GQQYN P DV++ +GADL VVGRGITQA D + 
Sbjct: 393 NN--IFDDAGLIQLTPGVQLTKSTDNLGQQYNTPQDVVS-KGADLVVVGRGITQANDKLS 449

Query: 291 AARRYKEVMWEAYEQRLKKE 310
           A   YK+V+WEAYE R+K+E
Sbjct: 450 AVLEYKKVLWEAYETRIKQE 469

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|261335924|emb|CBH09304.1| putative uridine 5'-monophosphate synthase [Heliconius melpomene]

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 105/197 (53%), Gaps = 35/197 (17%)

Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      IGEWA  VT HS+ G G L+ +   S   G +RGVFL+A++
Sbjct: 304 KYADIGNTVSLQYSKGLYKIGEWADCVTSHSLPGEGILKALN--SSINGVNRGVFLLAEM 361

Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           SC+GNLI   YT+                             T+K+A  +P LI G VCQ
Sbjct: 362 SCEGNLITPDYTEA----------------------------TVKMAAKYPELITGFVCQ 393

Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
             +   ++PGL+QLTPG+ L  + DN GQ YN P  VI   GAD+ VVGRGI  +  P  
Sbjct: 394 HKNTF-NDPGLIQLTPGVQLESSKDNLGQIYNTPEKVILENGADVIVVGRGIVASKSPET 452

Query: 291 AARRYKEVMWEAYEQRL 307
            A  YK+ +W+ Y +R+
Sbjct: 453 QAVIYKDALWKCYTKRV 469

Source: Heliconius melpomene

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371945|gb|EFR20004.1| hypothetical protein AND_20802 [Anopheles darlingi]

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/198 (41%), Positives = 109/198 (55%), Gaps = 33/198 (16%)

Query: 115  KLADIGAAVGHQF----RLIGEWAHLVTVHSIAGPGPLQEIQ-RISDELGEDRGVFLIAQ 169
            K ADIG  V  Q+      I EWA LVTVHS+ G G L+ ++  ISD+    RGVFL+A+
Sbjct: 1361 KFADIGNTVAQQYGGGLYRIAEWADLVTVHSLPGQGILKGLKATISDKPATLRGVFLLAE 1420

Query: 170  LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
            +S QG L DEKY     K  T              + ++D              +AG+VC
Sbjct: 1421 MSTQGALTDEKYATATMKIAT--------------EMESD-------------FVAGIVC 1453

Query: 230  QAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPV 289
            Q   V+ S PGLLQLTPG+ L +  D  GQ Y+ P  V+  RGAD+ VVGRGI  +  P 
Sbjct: 1454 QGKDVVTS-PGLLQLTPGVKLEEGVDTLGQLYDSPERVVKERGADICVVGRGILNSKTPS 1512

Query: 290  EAARRYKEVMWEAYEQRL 307
            E AR Y++ +WEAY +R+
Sbjct: 1513 EMARVYRDRLWEAYLERV 1530

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195054431|ref|XP_001994128.1| GH23167 [Drosophila grimshawi] gi|193895998|gb|EDV94864.1| GH23167 [Drosophila grimshawi]

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 112/201 (55%), Gaps = 33/201 (16%)

Query: 115 KLADIGAAVGHQF----RLIGEWAHLVTVHSIAGPGPLQEIQRISD--ELGEDRGVFLIA 168
           K ADIG  V  Q+      I +WA LVT H++ G   +Q ++   D  ++ ++RGVFL+A
Sbjct: 319 KFADIGNTVALQYGKGIYKISDWADLVTAHTLPGRSIVQGLKAALDGNDVAKERGVFLLA 378

Query: 169 QLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLV 228
           ++S  GNLIDEKY +               N+  +     DV             + G+V
Sbjct: 379 EMSANGNLIDEKYKE---------------NSNKIATEGGDVD-----------FVTGVV 412

Query: 229 CQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDP 288
           CQ+    A  PGL+QLTPG+ ++++ D  GQQYN P  VI  RGAD+GVVGRGI QA + 
Sbjct: 413 CQSTGCFAF-PGLIQLTPGVKIDESVDKLGQQYNTPEHVIKERGADIGVVGRGILQAANV 471

Query: 289 VEAARRYKEVMWEAYEQRLKK 309
            +AA  Y + +W AYE+R+ K
Sbjct: 472 EKAALTYSDRLWAAYEERVAK 492

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017779|ref|XP_002429364.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514273|gb|EEB16626.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 125/238 (52%), Gaps = 43/238 (18%)

Query: 70  TDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRL 129
           T F    DF+   ++     +KN +      F++ ++        K +DIG  V  Q++L
Sbjct: 280 THFDTIEDFNKNSYFELMKIAKNNN------FLIMED-------RKFSDIGNTVNLQYKL 326

Query: 130 IGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAI 189
           I  W+ +VT HSI+G   +  ++    +  E++G F++A+LSCQGNLI ++Y+       
Sbjct: 327 IKNWSDIVTTHSISGESIIDALKSCV-KTDEEKGCFIVAELSCQGNLIGKEYSTA----- 380

Query: 190 TLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIH 249
                                  T+K+A+     + GLVCQ+P ++   P L+QLTPG+ 
Sbjct: 381 -----------------------TVKMAEKHSDYVIGLVCQSPELIKV-PHLIQLTPGVK 416

Query: 250 LNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL 307
           + +  D  GQ YN P  V+  +GAD+ VVGRGI ++ +P +AA  YKE +W+A  +R+
Sbjct: 417 IEEGSDGLGQNYNSPEYVVLEKGADVAVVGRGIIKSQNPEKAAILYKEKLWDASLKRI 474

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795292|gb|EFZ18097.1| hypothetical protein SINV_06234 [Solenopsis invicta]

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 110/203 (54%), Gaps = 36/203 (17%)

Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K +DIG  V  Q+R     I EWA L+TVHS+ G   +  +++  + + E RG+FL+A++
Sbjct: 319 KFSDIGNTVSLQYRHGLYRIAEWADLITVHSVPGASIIDALKKALENITEPRGIFLVAEM 378

Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S +  L    Y                            ++ T+ +A+    L+ GLVCQ
Sbjct: 379 SSENALTTSDY----------------------------LKRTVSIAEEASDLVIGLVCQ 410

Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDP-V 289
             S L + PGLLQLTPG+ L+++GD  GQQYN P  VI   GADL VVGRGIT++P   +
Sbjct: 411 --SNLLAQPGLLQLTPGVRLSKSGDGLGQQYNNPQSVIN-AGADLAVVGRGITESPHGYL 467

Query: 290 EAARRYKEVMWEAYEQRLKKENS 312
            A   YK  +W AY++R+   N+
Sbjct: 468 TATLEYKRELWNAYKERINTSNT 490

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787283|gb|EFZ13419.1| hypothetical protein SINV_11550 [Solenopsis invicta]

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/198 (38%), Positives = 108/198 (54%), Gaps = 36/198 (18%)

Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K  DIG  V  Q+R     I EWA L+T HS+ G   +  +++  + + E RG+FL+A++
Sbjct: 319 KFGDIGNTVSLQYRHGLYRIAEWADLITAHSVPGASTIDALKKALENITEPRGIFLVAEM 378

Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           SC+  L    Y                            V+ T+ +A+    L+ GLVCQ
Sbjct: 379 SCKDALTTGDY----------------------------VKRTVSIAEEASDLVVGLVCQ 410

Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDP-V 289
             S L + PGLLQLTPG+ L+++ D  GQQYN P  VI   GADL VVGRGIT++P   +
Sbjct: 411 --SNLLAQPGLLQLTPGVKLSKSDDGLGQQYNNPQSVIN-AGADLAVVGRGITESPHGYL 467

Query: 290 EAARRYKEVMWEAYEQRL 307
           +A   YK  +W+AYE+R+
Sbjct: 468 KATLEYKRELWKAYEERI 485

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195452922|ref|XP_002073559.1| GK13081 [Drosophila willistoni] gi|194169644|gb|EDW84545.1| GK13081 [Drosophila willistoni]

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 33/201 (16%)

Query: 115 KLADIGAAVGHQF----RLIGEWAHLVTVHSIAGPGPLQEIQRI--SDELGEDRGVFLIA 168
           K ADIG  V  Q+      I  WA LVT H++ G   LQ ++    + E G++RGVFL++
Sbjct: 321 KFADIGNTVSLQYGKGLYKISNWADLVTAHTLPGRSILQGLKAALGNVEAGQERGVFLLS 380

Query: 169 QLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLV 228
           ++S  GNLID+KY +               N+  +     D+             +AG+V
Sbjct: 381 EMSASGNLIDDKYKE---------------NSNKIATEGGDID-----------FVAGIV 414

Query: 229 CQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDP 288
           CQ+ +  A  PGL+QLTPG+ ++++ D  GQQY  P  V+  RGAD+GVVGRGI QA D 
Sbjct: 415 CQSSNAFAF-PGLIQLTPGVKIDESVDKLGQQYQTPELVVKERGADIGVVGRGIIQANDV 473

Query: 289 VEAARRYKEVMWEAYEQRLKK 309
            +AA  Y++ +W AY++R+ K
Sbjct: 474 QKAAITYRDRLWTAYKERVAK 494

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
FB|FBgn0003257	493	r-l "rudimentary-like" [Drosop	0.195	0.172	0.5	1.7e-26
ZFIN|ZDB-GENE-040426-785	479	umps "uridine monophosphate sy	0.218	0.198	0.391	2e-24
UNIPROTKB|B5LY68	388	UMPS "Orotate phosphoribosyltr	0.211	0.237	0.436	1.1e-20
UNIPROTKB|P11172	480	UMPS "Uridine 5'-monophosphate	0.211	0.191	0.436	3.5e-20
UNIPROTKB|E2RRY7	480	UMPS "Uncharacterized protein"	0.225	0.204	0.4	4.2e-19
UNIPROTKB|F1NPH9	479	UMPS "Uncharacterized protein"	0.184	0.167	0.512	2.2e-13
DICTYBASE|DDB_G0280041	478	pyr56 "UMP synthase" [Dictyost	0.230	0.209	0.362	9.9e-19
UNIPROTKB|P31754	480	UMPS "Uridine 5'-monophosphate	0.218	0.197	0.391	4.9e-18
POMBASE|SPCC330.05c	264	ura4 "orotidine 5'-phosphate d	0.244	0.401	0.349	1.7e-13
MGI|MGI:1298388	481	Umps "uridine monophosphate sy	0.184	0.166	0.5	8.1e-13

FB|FBgn0003257 r-l "rudimentary-like" [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
 Identities = 43/86 (50%), Positives = 60/86 (69%)

Query:   224 IAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGIT 283
             +AG+VCQ+    A  PGLLQLTPG+ +++  D  GQQY  P  V+  RGAD+GVVGRGI 
Sbjct:   409 VAGVVCQSSDAFAF-PGLLQLTPGVKIDEGVDQLGQQYQSPEHVVKERGADIGVVGRGIL 467

Query:   284 QAPDPVEAARRYKEVMWEAYEQRLKK 309
             +A  P +AA+ Y++ +W AY+ R+ K
Sbjct:   468 KASSPKQAAQTYRDRLWAAYQDRVAK 493

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA;IC;NAS

GO:0004588 "orotate phosphoribosyltransferase activity" evidence=ISS;IMP

GO:0004590 "orotidine-5'-phosphate decarboxylase activity" evidence=ISS;IMP

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-040426-785 umps "uridine monophosphate synthetase" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
 Identities = 38/97 (39%), Positives = 60/97 (61%)

Query:   211 QETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITL 270
             Q  +K+A+     + G +  + S ++  PG++ +TPG+ +   GD  GQQY+ P DVI  
Sbjct:   381 QAVVKMAEDHSDFVFGFI--SGSKISEKPGMVHMTPGVQMQTGGDGLGQQYSSPEDVICT 438

Query:   271 RGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL 307
             +G+D+ +VGRGI  +PD + AA  Y+   WEAY +RL
Sbjct:   439 KGSDIIIVGRGILGSPDRLRAAGEYRTAGWEAYLKRL 475

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

GO:0004588 "orotate phosphoribosyltransferase activity" evidence=IEA

GO:0004590 "orotidine-5'-phosphate decarboxylase activity" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|B5LY68 UMPS "Orotate phosphoribosyltransferase" [Homo sapiens (taxid:9606)]

 Score = 206 (77.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 41/94 (43%), Positives = 58/94 (61%)

Query:   214 LKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGA 273
             +++A+     + G +  + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+
Sbjct:   295 VRMAEEHSEFVVGFI--SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGS 352

Query:   274 DLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL 307
             D+ +VGRGI  A D +EAA  Y++  WEAY  RL
Sbjct:   353 DIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRL 386

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

GO:0004588 "orotate phosphoribosyltransferase activity" evidence=IEA

GO:0004590 "orotidine-5'-phosphate decarboxylase activity" evidence=IEA

GO:0007565 "female pregnancy" evidence=IEA

GO:0007595 "lactation" evidence=IEA

GO:0035690 "cellular response to drug" evidence=IEA

UNIPROTKB|P11172 UMPS "Uridine 5'-monophosphate synthase" [Homo sapiens (taxid:9606)]

 Score = 206 (77.6 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
 Identities = 41/94 (43%), Positives = 58/94 (61%)

Query:   214 LKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGA 273
             +++A+     + G +  + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+
Sbjct:   387 VRMAEEHSEFVVGFI--SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGS 444

Query:   274 DLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL 307
             D+ +VGRGI  A D +EAA  Y++  WEAY  RL
Sbjct:   445 DIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRL 478

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0007565 "female pregnancy" evidence=IEA

GO:0007595 "lactation" evidence=IEA

GO:0035690 "cellular response to drug" evidence=IEA

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004588 "orotate phosphoribosyltransferase activity" evidence=IDA;TAS

GO:0004590 "orotidine-5'-phosphate decarboxylase activity" evidence=IDA;TAS

GO:0006222 "UMP biosynthetic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046134 "pyrimidine nucleoside biosynthetic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

UNIPROTKB|E2RRY7 UMPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 196 (74.1 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
 Identities = 40/100 (40%), Positives = 60/100 (60%)

Query:   208 NDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDV 267
             N  +  +++A+     + G +  + S ++  P  L LTPG+ L   GDN GQQYN P +V
Sbjct:   381 NYTKAAVRMAEEHSEFVVGFI--SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEV 438

Query:   268 ITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL 307
             I  RG+D+ +VGRGI  + + +EAA  Y++  WEAY  RL
Sbjct:   439 IGKRGSDIIIVGRGIITSFNRLEAAELYRKAAWEAYLSRL 478

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004588 "orotate phosphoribosyltransferase activity" evidence=IEA

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0004590 "orotidine-5'-phosphate decarboxylase activity" evidence=IEA

UNIPROTKB|F1NPH9 UMPS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 41/80 (51%), Positives = 57/80 (71%)

Query:   329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
             +++ LL +M KK++NLC++ DVT +K+LL L   LGP I +LKTH D + DF++EV KEL
Sbjct:   236 VAARLLTLMEKKQTNLCLSADVTGSKELLQLAASLGPSICILKTHIDILNDFTQEVVKEL 295

Query:   389 TALAKQHEFLRSRNGWFSPI 408
              ALA QHEFL   +  F+ I
Sbjct:   296 RALADQHEFLIFEDRKFADI 315

GO:0004590 "orotidine-5'-phosphate decarboxylase activity" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

GO:0004588 "orotate phosphoribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0280041 pyr56 "UMP synthase" [Dictyostelium discoideum (taxid:44689)]

 Score = 190 (71.9 bits), Expect = 9.9e-19, Sum P(2) = 9.9e-19
 Identities = 37/102 (36%), Positives = 58/102 (56%)

Query:   206 CDND-VQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGP 264
             C  D   + +++A +    + GL+CQ   + +   GL+ +TPG+  N TGD  GQQYN P
Sbjct:   377 CVGDYTTQMIEMANNNKEEVMGLICQE-RLPSMTDGLVLMTPGVQFNSTGDAMGQQYNTP 435

Query:   265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQR 306
               +I  +  D+ +VGRGI Q+ DP   A +Y+   WE Y+ +
Sbjct:   436 EYIIKEKNTDVIIVGRGIYQSNDPKSVANKYRTAAWETYQSK 477

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0019856 "pyrimidine nucleobase biosynthetic process" evidence=IGI

GO:0004590 "orotidine-5'-phosphate decarboxylase activity" evidence=IEA;IGI;ISS;IMP

GO:0004588 "orotate phosphoribosyltransferase activity" evidence=IEA;IGI;ISS

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P31754 UMPS "Uridine 5'-monophosphate synthase" [Bos taurus (taxid:9913)]

 Score = 194 (73.4 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
 Identities = 38/97 (39%), Positives = 60/97 (61%)

Query:   211 QETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITL 270
             +  +++A+     + G +  + S ++  P  L LTPG+ L   GDN GQQY+ P +VI  
Sbjct:   384 EAAVQMAEEHSEFVIGFI--SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYHSPQEVIGK 441

Query:   271 RGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL 307
             RG+D+ +VGRGI  + + +EAA+ Y++  WEAY  RL
Sbjct:   442 RGSDIIIVGRGIIASANQLEAAKMYRKAAWEAYLSRL 478

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004590 "orotidine-5'-phosphate decarboxylase activity" evidence=IEA

GO:0004588 "orotate phosphoribosyltransferase activity" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

POMBASE|SPCC330.05c ura4 "orotidine 5'-phosphate decarboxylase Ura4" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 190 (71.9 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 37/106 (34%), Positives = 68/106 (64%)

Query:   311 NSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVL 370
             ++R+   +  R   +K  I+  LL +M +K+SNL VA+D+T+  ++L L  ++GP++ V+
Sbjct:     2 DARVFQSYSARAEGMKNPIAKELLALMEEKQSNLSVAVDLTKKSEILELVDKIGPYVCVI 61

Query:   371 KTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF 416
             KTH D V DF +++ ++L AL K+H FL   +  F+ I ++  L++
Sbjct:    62 KTHIDVVEDFDQDMVEKLVALGKKHRFLIFEDRKFADIGNTVKLQY 107

GO:0004590 "orotidine-5'-phosphate decarboxylase activity" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IGI

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

MGI|MGI:1298388 Umps "uridine monophosphate synthetase" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 8.1e-13, P = 8.1e-13
 Identities = 40/80 (50%), Positives = 59/80 (73%)

Query:   329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
             ++S LL +M KK++NLC++ DV++A++LL L   LGP I +LKTH D + DF+ +V +EL
Sbjct:   239 LASKLLRLMQKKETNLCLSADVSEARELLQLADALGPSICMLKTHVDILNDFTLDVMEEL 298

Query:   389 TALAKQHEFLRSRNGWFSPI 408
             TALAK+HEFL   +  F+ I
Sbjct:   299 TALAKRHEFLIFEDRKFADI 318

GO:0003824 "catalytic activity" evidence=IEA

GO:0004588 "orotate phosphoribosyltransferase activity" evidence=ISO

GO:0004590 "orotidine-5'-phosphate decarboxylase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0044205 "'de novo' UMP biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.1.23	LOW CONFIDENCE prediction!
3rd Layer	4.1.1	LOW CONFIDENCE prediction!
3rd Layer	3.4.24	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	434
pfam00215	217	pfam00215, OMPdecase, Orotidine 5'-phosphate decar	1e-32
cd04725	216	cd04725, OMP_decarboxylase_like, Orotidine 5'-phos	4e-28
TIGR01740	214	TIGR01740, pyrF, orotidine 5'-phosphate decarboxyl	6e-25
smart00934	212	smart00934, OMPdecase, Orotidine 5'-phosphate deca	9e-20
cd04280	180	cd04280, ZnMc_astacin_like, Zinc-dependent metallo	3e-18
COG0284	240	COG0284, PyrF, Orotidine-5'-phosphate decarboxylas	1e-17
pfam01400	191	pfam01400, Astacin, Astacin (Peptidase family M12A	4e-14
cd04283	182	cd04283, ZnMc_hatching_enzyme, Zinc-dependent meta	1e-09
cd04281	200	cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprot	1e-08
PRK00230	230	PRK00230, PRK00230, orotidine 5'-phosphate decarbo	1e-08
pfam00215	217	pfam00215, OMPdecase, Orotidine 5'-phosphate decar	4e-08
TIGR01740	214	TIGR01740, pyrF, orotidine 5'-phosphate decarboxyl	4e-08
cd04282	230	cd04282, ZnMc_meprin, Zinc-dependent metalloprotea	2e-07
cd04725	216	cd04725, OMP_decarboxylase_like, Orotidine 5'-phos	7e-07
PRK13813	215	PRK13813, PRK13813, orotidine 5'-phosphate decarbo	5e-06
smart00934	212	smart00934, OMPdecase, Orotidine 5'-phosphate deca	3e-05
COG0284	240	COG0284, PyrF, Orotidine-5'-phosphate decarboxylas	5e-04
COG0269	217	COG0269, SgbH, 3-hexulose-6-phosphate synthase and	6e-04
TIGR03128	206	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synth	7e-04
cd04726	202	cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate	0.004

>gnl|CDD|215795 pfam00215, OMPdecase, Orotidine 5'-phosphate decarboxylase / HUMPS family

 Score =  122 bits (308), Expect = 1e-32
 Identities = 64/184 (34%), Positives = 86/184 (46%), Gaps = 26/184 (14%)

Query: 114 LKLADIGAAVGHQFR-LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSC 172
           LK ADIG  V  Q        A +VTVH+ AG G L+  +  ++E G  +G+ L+A+LS 
Sbjct: 58  LKFADIGNTVAKQAEAKAKLGADIVTVHAYAGDGTLKAAKEAAEEYG--KGLLLVAELSS 115

Query: 173 QGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQA- 231
           +G+L  ++   +G+    +                           +F G+  G+V  A 
Sbjct: 116 KGSLDLQEEGDLGYTQEIVH--------------------RAADLAAFAGVD-GVVASAT 154

Query: 232 PSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEA 291
               A  P  L LTPGI L Q GD  GQQ      V    GAD+ +VGRGIT A DPV A
Sbjct: 155 EPEAALGPDFLLLTPGIGL-QGGDAGGQQRVTTPAVAKEAGADIIIVGRGITGAGDPVAA 213

Query: 292 ARRY 295
           AR  
Sbjct: 214 ARAI 217

This family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly related to pfam00834. Length = 217

>gnl|CDD|240076 cd04725, OMP_decarboxylase_like, Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

 Score =  110 bits (277), Expect = 4e-28
 Identities = 62/192 (32%), Positives = 82/192 (42%), Gaps = 33/192 (17%)

Query: 111 IIIL--KLADIGAAVGHQFR-LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLI 167
           ++ L  KL DI   V      L+G  A  VTVH   G   L+     ++E  + +G+F +
Sbjct: 51  LVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYGGSDMLKAALEAAEE--KGKGLFAV 108

Query: 168 AQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL 227
             LS  G L  ++        I   L+               V+   KLA+     + G+
Sbjct: 109 TVLSSPGALDLQE-------GIPGSLEDL-------------VERLAKLAREAG--VDGV 146

Query: 228 VCQA--PSVL--ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGIT 283
           VC A  P  L  A  P  L LTPGI   Q   +  ++   P D I   GAD  VVGR IT
Sbjct: 147 VCGATEPEALRRALGPDFLILTPGIGA-QGSGDDQKRGGTPEDAIRA-GADYIVVGRPIT 204

Query: 284 QAPDPVEAARRY 295
           QA DPV AA   
Sbjct: 205 QAADPVAAAEAI 216

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP. Length = 216

>gnl|CDD|233555 TIGR01740, pyrF, orotidine 5'-phosphate decarboxylase, subfamily 1

 Score =  101 bits (253), Expect = 6e-25
 Identities = 59/187 (31%), Positives = 81/187 (43%), Gaps = 32/187 (17%)

Query: 114 LKLADIGAAVGHQFR-LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSC 172
           LK ADI   V  Q+   I   A +V VH +AG   ++  +  + E    RG+  +A+L+ 
Sbjct: 56  LKFADIPNTVKLQYESKIKLGADMVNVHGVAGKESVEAAKEAASE-FGRRGLLAVAELTS 114

Query: 173 QGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQA- 231
            G+    + T                           V E  K A+ F GL  G VC A 
Sbjct: 115 MGSEAYGEDTM------------------------EAVIEYAKEAKEF-GLD-GPVCSAE 148

Query: 232 -PSVLASNPG-LLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPV 289
               +    G  L LTPGI L+ + D   QQ     +     GAD+ +VGRGI  A DPV
Sbjct: 149 EAKEIRKATGDFLILTPGIRLD-SKDADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPV 207

Query: 290 EAARRYK 296
           EAA+R +
Sbjct: 208 EAAKRIR 214

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 214

>gnl|CDD|214921 smart00934, OMPdecase, Orotidine 5'-phosphate decarboxylase / HUMPS family

 Score = 86.8 bits (216), Expect = 9e-20
 Identities = 62/197 (31%), Positives = 77/197 (39%), Gaps = 49/197 (24%)

Query: 111 III--LKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLI 167
            +   LKL DI   V    R   E  A  VTVH+ AG   ++     + + G   G+  +
Sbjct: 53  PVFLDLKLHDIPNTVARAARAAAELGADAVTVHAYAGSDMIEAALEAAKKYG--PGLLAV 110

Query: 168 AQLSCQG-----NLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG 222
             L+  G      L DE   +                          V    KLA+   G
Sbjct: 111 TVLTSPGAEDLQELGDESLEEQ-------------------------VLRLAKLAKE-AG 144

Query: 223 LIAGLVCQA--PSVL--ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVV 278
           L  G+VC A  P ++  A  P  L LTPGI     GD   Q       V    GAD+ VV
Sbjct: 145 LD-GVVCSATEPELIRRALGPDFLILTPGI-----GD---QGRVATPAVAIGAGADIIVV 195

Query: 279 GRGITQAPDPVEAARRY 295
           GR ITQA DPVEAA   
Sbjct: 196 GRPITQAADPVEAAEAI 212

Orotidine 5'-phosphate decarboxylase (OMPdecase) catalyzes the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Length = 212

>gnl|CDD|239807 cd04280, ZnMc_astacin_like, Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 27/50 (54%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 50  IDDDHFCTERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVP 99
           I   +   E NF KY P  +T +GV YD+ SVMHY   AFSKNG  TIVP
Sbjct: 108 IQPGY---EHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNGKPTIVP 154

Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development. Length = 180

>gnl|CDD|223361 COG0284, PyrF, Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 62/197 (31%), Positives = 75/197 (38%), Gaps = 31/197 (15%)

Query: 114 LKLADIGAAVGHQFR-LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSC 172
           LKLADI   V    +      A  VTVH+  G   L+  +   +  G    V  +  L+ 
Sbjct: 69  LKLADIPNTVALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGG--PFVLAVTSLTS 126

Query: 173 QGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAP 232
            G L      Q+    I   L++              V    KLA    GL  G+VC A 
Sbjct: 127 MGEL------QLAELGINSSLEEQ-------------VLRLAKLAGEA-GLD-GVVCSAE 165

Query: 233 SV----LASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDP 288
            V        P  L LTPGI     G    Q            GAD  VVGR ITQA DP
Sbjct: 166 EVAAIREILGPDFLILTPGIGAGSQGG--DQGRVMTPGEAVRAGADYIVVGRPITQAGDP 223

Query: 289 VEAARR-YKEVMWEAYE 304
           V AAR   +E+  EA  
Sbjct: 224 VAAARAIAREIAREARG 240

Length = 240

>gnl|CDD|201773 pfam01400, Astacin, Astacin (Peptidase family M12A)

 Score = 70.4 bits (173), Expect = 4e-14
 Identities = 25/43 (58%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 58  ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGD-DTIVP 99
           E NF+KY P E+   GV YD+ S+MHY   AFSKNG   TIVP
Sbjct: 118 EGNFEKYDPDEVDSLGVPYDYGSIMHYGPYAFSKNGYLPTIVP 160

The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family contain two conserved disulphide bridges, these are joined 1-4 and 2-3. Members of this family have an amino terminal propeptide which is cleaved to give the active protease domain. All other linked domains are found to the carboxyl terminus of this domain. This family includes: Astacin, a digestive enzyme from Crayfish. Meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain. Proteins involved in morphogenesis such as human bone morphogenetic protein 1, and Tolloid from Drosophila melanogaster. Length = 191

>gnl|CDD|239810 cd04283, ZnMc_hatching_enzyme, Zinc-dependent metalloprotease, hatching enzyme-like subfamily

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 58  ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPH 100
             NF K    +  + G  YD+ SVMHY R AFS NG  TIVP 
Sbjct: 116 LYNFDKQ---DTNNLGTPYDYSSVMHYGRYAFSINGKPTIVPI 155

Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion. Length = 182

>gnl|CDD|239808 cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprotease; BMP1/TLD-like subfamily

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 58  ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGD-DTIVP 99
           E NF K  P E+   G  YDFDS+MHY+R  FS+    DTI+P
Sbjct: 126 EYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILP 168

BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning. Length = 200

>gnl|CDD|234695 PRK00230, PRK00230, orotidine 5'-phosphate decarboxylase; Reviewed

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 57/201 (28%), Positives = 71/201 (35%), Gaps = 58/201 (28%)

Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIA---- 168
           LKL DI   V    R + +    +V VH+  GP  ++  +     L       LIA    
Sbjct: 60  LKLHDIPNTVAKAVRALAKLGVDMVNVHASGGPRMMKAAREA---LEPKSRPLLIAVTVL 116

Query: 169 ------QLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG 222
                  L+  G              I L L++              V    KLAQ    
Sbjct: 117 TSMDEEDLAELG--------------INLSLEEQ-------------VLRLAKLAQE--- 146

Query: 223 LIAGL---VCQAPSVLA----SNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGA 273
             AGL   VC A    A    + P  L +TPGI     G + G Q     P   I   G+
Sbjct: 147 --AGLDGVVCSAQEAAAIREATGPDFLLVTPGIRP--AGSDAGDQKRVMTPAQAIAA-GS 201

Query: 274 DLGVVGRGITQAPDPVEAARR 294
           D  VVGR ITQA DP  A   
Sbjct: 202 DYIVVGRPITQAADPAAAYEA 222

Length = 230

>gnl|CDD|215795 pfam00215, OMPdecase, Orotidine 5'-phosphate decarboxylase / HUMPS family

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 342 SNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFL 398
            NLCVALDV   ++ L L  +LGP++ ++K  +     F  ++  EL    ++H FL
Sbjct: 1   PNLCVALDVPTLEEALELADELGPYVDIIKVGTPLFEAFGLKLVAEL----RKHGFL 53

This family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly related to pfam00834. Length = 217

>gnl|CDD|233555 TIGR01740, pyrF, orotidine 5'-phosphate decarboxylase, subfamily 1

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQ 394
           L VALDVT  ++ L L   LG  I V+K   D + D  E++  EL  L K 
Sbjct: 1   LIVALDVTTKEEALDLADSLGEEICVIKVGIDLLLDGGEKIIDELAKLNKL 51

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 214

>gnl|CDD|239809 cd04282, ZnMc_meprin, Zinc-dependent metalloprotease, meprin_like subfamily

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 7/66 (10%)

Query: 58  ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDD-TIV---PHF--VMAQNVLWSI 111
           E NF KY  S  TD    YD++SVMHYS  +F+K   + TI    P F  ++ Q + +S 
Sbjct: 159 EHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQRLDFSD 218

Query: 112 I-ILKL 116
           I + +L
Sbjct: 219 IDLERL 224

Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells. Length = 230

>gnl|CDD|240076 cd04725, OMP_decarboxylase_like, Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAK 393
           L VALD    +  L L   LGP++  +K   +       E+ KEL  L  
Sbjct: 1   LIVALDPPDEEFALALIDALGPYVCAVKVGLELFEAAGPEIVKELRELGF 50

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP. Length = 216

>gnl|CDD|237520 PRK13813, PRK13813, orotidine 5'-phosphate decarboxylase; Provisional

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 53/198 (26%), Positives = 70/198 (35%), Gaps = 61/198 (30%)

Query: 114 LKLADIGAAVGHQFRLI-------GEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFL 166
           LK+ADI        RLI       G W   + VH   G   L+ +   + E G    VF+
Sbjct: 60  LKVADIPNTN----RLICEAVFEAGAWG--IIVHGFTGRDSLKAVVEAAAESGGK--VFV 111

Query: 167 IAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAG 226
           + ++S  G L          +    +L                     KLAQ   G   G
Sbjct: 112 VVEMSHPGALEF-------IQPHADKL--------------------AKLAQEA-GA-FG 142

Query: 227 LVCQA--PSVL-----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVG 279
           +V  A  P  +          L  ++PGI         G Q     D I   GAD  +VG
Sbjct: 143 VVAPATRPERVRYIRSRLGDELKIISPGI---------GAQGGKAADAI-KAGADYVIVG 192

Query: 280 RGITQAPDPVEAARRYKE 297
           R I  A DP EAA+   E
Sbjct: 193 RSIYNAADPREAAKAINE 210

Length = 215

>gnl|CDD|214921 smart00934, OMPdecase, Orotidine 5'-phosphate decarboxylase / HUMPS family

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFL 398
            L VALDV   ++ L L   LG  + ++K  ++       E    +  L +   F 
Sbjct: 1   RLIVALDVPDLEEALELADALGDSVDIIKVGTELFLAEGPEG---VKELKELFGFP 53

Orotidine 5'-phosphate decarboxylase (OMPdecase) catalyzes the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Length = 212

>gnl|CDD|223361 COG0284, PyrF, Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 333 LLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALA 392
            L +M      L VALDV   ++ L    +LGP +  +K     V  F  ++ +EL A  
Sbjct: 3   GLRLMEAMSRRLIVALDVPTEEEALAFVDKLGPTVDFVKVGKPLVAFFGADILEELKARG 62

Query: 393 K 393
           K
Sbjct: 63  K 63

Length = 240

>gnl|CDD|223347 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 268 ITLRGADLGVVGRGITQAPDPVEAARRYKEVMW 300
               GAD+ +VGR IT A DP EAAR++KE + 
Sbjct: 181 FKGIGADIVIVGRAITGAKDPAEAARKFKEEID 213

Length = 217

>gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 266 DVITLRGADLGVVGRGITQAPDPVEAARRYKEVM 299
           DVI L G D+ +VG  IT+A DP EAAR+ ++++
Sbjct: 174 DVIKL-GPDIVIVGGAITKAADPAEAARQIRKLI 206

Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. Length = 206

>gnl|CDD|240077 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 15/23 (65%), Positives = 17/23 (73%)

Query: 272 GADLGVVGRGITQAPDPVEAARR 294
           GAD+ +VGR IT A DP EAAR 
Sbjct: 179 GADIVIVGRAITGAADPAEAARE 201

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. Length = 202

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	434
COG0284	240	PyrF Orotidine-5'-phosphate decarboxylase [Nucleot	100.0
cd04725	216	OMP_decarboxylase_like Orotidine 5'-phosphate deca	99.97
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	99.96
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	99.96
TIGR02127	261	pyrF_sub2 orotidine 5'-phosphate decarboxylase, su	99.93
PF00215	226	OMPdecase: Orotidine 5'-phosphate decarboxylase /	99.93
PRK13305	218	sgbH 3-keto-L-gulonate-6-phosphate decarboxylase;	99.93
KOG1377|consensus	261		99.92
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	99.88
PRK00125	278	pyrF orotidine 5'-phosphate decarboxylase; Reviewe	99.86
cd04282	230	ZnMc_meprin Zinc-dependent metalloprotease, meprin	99.85
KOG1377|consensus	261		99.84
PRK05500	477	bifunctional orotidine 5'-phosphate decarboxylase/	99.77
COG0284	240	PyrF Orotidine-5'-phosphate decarboxylase [Nucleot	99.74
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	99.73
TIGR02127	261	pyrF_sub2 orotidine 5'-phosphate decarboxylase, su	99.7
KOG3714|consensus	411		99.68
cd04281	200	ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1	99.67
PRK13305	218	sgbH 3-keto-L-gulonate-6-phosphate decarboxylase;	99.65
cd04725	216	OMP_decarboxylase_like Orotidine 5'-phosphate deca	99.57
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	99.53
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	99.51
PF00215	226	OMPdecase: Orotidine 5'-phosphate decarboxylase /	99.51
cd04280	180	ZnMc_astacin_like Zinc-dependent metalloprotease,	99.48
cd04283	182	ZnMc_hatching_enzyme Zinc-dependent metalloproteas	99.43
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	99.39
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	99.37
) family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01400">PF01400	191	Astacin: Astacin (Peptidase family M12A) This Pros	99.36
PRK00125	278	pyrF orotidine 5'-phosphate decarboxylase; Reviewe	99.35
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	99.3
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	99.29
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	99.26
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	98.76
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	98.65
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	98.44
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	98.44
cd04327	198	ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MM	98.43
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	98.42
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	97.69
PLN02334	229	ribulose-phosphate 3-epimerase	97.45
PRK05500	477	bifunctional orotidine 5'-phosphate decarboxylase/	97.38
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	97.04
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	96.56
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	96.13
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	96.08
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	95.94
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	95.71
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	95.5
PRK08227	264	autoinducer 2 aldolase; Validated	95.4
cd04268	165	ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_	95.15
KOG3111|consensus	224		94.9
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	94.57
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	94.47
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	93.93
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	93.84
PRK07695	201	transcriptional regulator TenI; Provisional	93.16
PRK00208	250	thiG thiazole synthase; Reviewed	93.12
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	93.0
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	92.24
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	91.82
PRK06852	304	aldolase; Validated	90.69
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	90.5
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	90.17
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	89.04
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	88.87
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	88.67
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	88.19
PRK08005	210	epimerase; Validated	87.45
PRK14057	254	epimerase; Provisional	86.71
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	86.25
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	85.89
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	85.03
PRK04302	223	triosephosphate isomerase; Provisional	84.06
PRK07226	267	fructose-bisphosphate aldolase; Provisional	83.61
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	83.31
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	82.64
KOG1606|consensus	296		80.99
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	80.4

>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

Probab=100.00  E-value=5.3e-35  Score=282.95  Aligned_cols=162  Identities=34%  Similarity=0.451  Sum_probs=137.1

Q ss_pred             HhhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhh
Q psy4093         111 IIILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAI  189 (434)
Q Consensus       111 i~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~  189 (434)
                      ++|+|+||||||++.+++...+ ++|++|||+++|.+||++++++..+.+  +.+++||+|||.+   +.++.++||..+
T Consensus        66 flDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~--~~vl~vT~lts~~---~~~~~~~~~~~~  140 (240)
T COG0284          66 FLDLKLADIPNTVALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGG--PFVLAVTSLTSMG---ELQLAELGINSS  140 (240)
T ss_pred             EEeeecccchHHHHHHHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcC--ceEEEEEeCCCch---hhhhhhccccch
Confidence            3499999999999999998888 599999999999999999999997765  3688888888853   333444444443


Q ss_pred             HHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccchh----hcCCCceEecCcccccCCCCCCCCc--cC
Q psy4093         190 TLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSVL----ASNPGLLQLTPGIHLNQTGDNKGQQ--YN  262 (434)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ--~~  262 (434)
                      .                   .+.++++|+++.. |++|+|||++|+.    .++++|++||||||+   +++.|||  ++
T Consensus       141 ~-------------------~~~v~~~a~~~~~~G~dgvv~~~~e~~~ir~~~g~~~~iltPGIg~---~~~~gdQ~~~~  198 (240)
T COG0284         141 L-------------------EEQVLRLAKLAGEAGLDGVVCSAEEVAAIREILGPDFLILTPGIGA---GSQGGDQGRVM  198 (240)
T ss_pred             H-------------------HHHHHHHHHHhccCCceEEEcCHHHHHHHHHhcCCCcEEECCCcCc---CcCCCCccccc
Confidence            2                   3688999999887 8999999999886    678999999999998   4556677  67


Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                      ||.+|+ .+||||||||||||+|+||+++++++.+ +|.
T Consensus       199 t~~~A~-~~Gad~ivVGR~I~~a~~p~~a~~~i~~-~~~  235 (240)
T COG0284         199 TPGEAV-RAGADYIVVGRPITQAGDPVAAARAIAR-EIA  235 (240)
T ss_pred             CHHHHH-hcCCCEEEEChhhhcCCChHHHHHHHHH-HHH
Confidence            999999 8999999999999999999999999997 443

>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

Probab=99.97  E-value=1.9e-31  Score=254.65  Aligned_cols=188  Identities=32%  Similarity=0.450  Sum_probs=143.9

Q ss_pred             cceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHh
Q psy4093          78 FDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRIS  155 (434)
Q Consensus        78 y~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~  155 (434)
                      |-.+.+-|...|...|..++......+    +.++ |+|++|||||+..+++.+.+ ++|++|||+++|.+||+++++++
T Consensus        23 ~v~~iKvg~~l~~~~g~~~i~~l~~~~----~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~~G~~~l~~~~~~~   98 (216)
T cd04725          23 YVCAVKVGLELFEAAGPEIVKELRELG----FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYGGSDMLKAALEAA   98 (216)
T ss_pred             cccEEEECHHHHHhcCHHHHHHHHHCC----CcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHH
Confidence            345666667777777766665544443    3345 99999999999999887666 79999999999999999999998


Q ss_pred             hhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchh
Q psy4093         156 DELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVL  235 (434)
Q Consensus       156 ~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~  235 (434)
                      .+.+  +++++|++|||+++.   ++++ ++....                +..++.+.++|+++  +++|+|||+.+..
T Consensus        99 ~~~~--~~~~~v~~lss~~~~---~~q~-~~~~~~----------------~~~~~~~~~~a~~~--g~~G~V~~~~~~~  154 (216)
T cd04725          99 EEKG--KGLFAVTVLSSPGAL---DLQE-GIPGSL----------------EDLVERLAKLAREA--GVDGVVCGATEPE  154 (216)
T ss_pred             hccC--CeEEEEEcCCCCCHH---HHHh-hhcCCH----------------HHHHHHHHHHHHHH--CCCEEEECCcchH
Confidence            7554  689999999996433   3322 222111                11123444455444  6999999998874


Q ss_pred             ----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093         236 ----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRY  295 (434)
Q Consensus       236 ----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i  295 (434)
                          ..+++|++||||||++..++ .|+|++||.+|+ +.|+|++||||+|++|+||.+++++|
T Consensus       155 ~i~~~~~~~~~~ltPGI~~~~~~~-dq~r~~~~~~a~-~~g~~~ivvGR~I~~a~~p~~~~~~i  216 (216)
T cd04725         155 ALRRALGPDFLILTPGIGAQGSGD-DQKRGGTPEDAI-RAGADYIVVGRPITQAADPVAAAEAI  216 (216)
T ss_pred             HHHHhhCCCCeEEcCCcCCCCCcc-ccccccCHHHHH-HcCCcEEEEChhhccCCCHHHHHhcC
Confidence                57789999999999985455 566699999999 99999999999999999999999875

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=99.96  E-value=2.9e-30  Score=245.81  Aligned_cols=181  Identities=31%  Similarity=0.440  Sum_probs=141.2

Q ss_pred             eecccchhhhccCCCccccccchhchhhhHHHhhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhh
Q psy4093          80 SVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDEL  158 (434)
Q Consensus        80 SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~  158 (434)
                      .+..-|...|...|...+......+.   ..++|+|++|||||+..+++.+.+ ++|++|||+++|.+|++++++.+.+.
T Consensus        25 ~~iKig~~l~~~~G~~~v~~l~~~~~---~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~  101 (213)
T TIGR01740        25 EVIKVGIDLLLDGGDKIIDELAKLNK---LIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAGSESVEAAKEAASEG  101 (213)
T ss_pred             cEEEECHHHHHhcCHHHHHHHHHcCC---CEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcC
Confidence            34444455555555444433333221   223499999999999999997666 79999999999999999999988765


Q ss_pred             CCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccchh--
Q psy4093         159 GEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSVL--  235 (434)
Q Consensus       159 ~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~~--  235 (434)
                      +  +++++|++|||+++.+   +..     .                   ..+.++++|+++.+ |++|+||++.|+.  
T Consensus       102 ~--~~v~~v~~lss~~~~~---~~~-----~-------------------~~~~v~~~a~~~~~~g~~g~v~~~~~~~~i  152 (213)
T TIGR01740       102 G--RGLLAVTELTSMGSLD---YGE-----D-------------------TMEKVLEYAKEAKAFGLDGPVCSAEEAKEI  152 (213)
T ss_pred             C--CeEEEEEcCCCCChhh---hCc-----C-------------------HHHHHHHHHHHhhhcCCeEEEeCHHHHHHH
Confidence            5  6899999999976443   211     0                   12588999999887 7999999998875  


Q ss_pred             --hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093         236 --ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYK  296 (434)
Q Consensus       236 --~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~  296 (434)
                        ..+ +|++||||||++  +++.+||  ++||.+++ ++|||++||||+|++++||.+++++|+
T Consensus       153 r~~~~-~~~~vtPGI~~~--g~~~~dq~~~~~~~~~~-~~Gad~iVvGr~I~~~~d~~~~~~~~~  213 (213)
T TIGR01740       153 RKFTG-DFLILTPGIRLQ--SKGADDQQRVVTLEDAK-EAGADVIIVGRGIYAAEDPVEAAKRIR  213 (213)
T ss_pred             HHhcC-CceEEeCCcCCC--CCCcCCccccCCHHHHH-HcCCCEEEEChhhcCCCCHHHHHHHhC
Confidence              445 799999999998  5555556  78999999 999999999999999999999988764

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=99.96  E-value=7.9e-29  Score=238.90  Aligned_cols=183  Identities=27%  Similarity=0.396  Sum_probs=141.4

Q ss_pred             chhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhhCCCC
Q psy4093          85 SRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDR  162 (434)
Q Consensus        85 g~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~  162 (434)
                      +...|...|..++......    +..++ |+|++|||+|+..+++.+.+ ++|++|||+.+|.+|++++++++.+.+ ..
T Consensus        34 g~~~f~~~G~~~i~~l~~~----~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~~-~~  108 (230)
T PRK00230         34 GMELFTAGGPQFVRELKQR----GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHASGGPRMMKAAREALEPKS-RP  108 (230)
T ss_pred             cHHHHHhcCHHHHHHHHhc----CCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcccCCHHHHHHHHHHhhccC-CC
Confidence            3455555555555433221    23345 99999999999999998878 499999999999999999999876432 13


Q ss_pred             ceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccchh----hc
Q psy4093         163 GVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSVL----AS  237 (434)
Q Consensus       163 ~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~~----~~  237 (434)
                      .+++|++|||.   +.+++.+.|+....                   .+.++++++.+.+ |++|+||++.+..    .+
T Consensus       109 ~~~~V~~lts~---~~~~l~~~~~~~~~-------------------~~~v~~~a~~a~~~g~dgvv~~~~~~~~ir~~~  166 (230)
T PRK00230        109 LLIAVTVLTSM---DEEDLAELGINLSL-------------------EEQVLRLAKLAQEAGLDGVVCSAQEAAAIREAT  166 (230)
T ss_pred             eEEEEEECCCC---CHHHHHhCcCCCCH-------------------HHHHHHHHHHHHHcCCeEEEeChHHHHHHHhhc
Confidence            58888999884   34455443332211                   2466777777666 7999999998874    45


Q ss_pred             CCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         238 NPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       238 ~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +++|+.||||||++  |+..+||  +.||.+|+ ++|||++||||+||+|+||.+++++|++
T Consensus       167 ~~~~~~v~pGI~~~--g~~~~dq~~~~~~~~ai-~~Gad~iVvGR~I~~a~dP~~~a~~i~~  225 (230)
T PRK00230        167 GPDFLLVTPGIRPA--GSDAGDQKRVMTPAQAI-AAGSDYIVVGRPITQAADPAAAYEAILA  225 (230)
T ss_pred             CCceEEEcCCcCCC--CCCcchHHHHhCHHHHH-HcCCCEEEECCcccCCCCHHHHHHHHHH
Confidence            78999999999986  6666888  57999999 9999999999999999999999999998

>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2

Probab=99.93  E-value=1.6e-26  Score=226.74  Aligned_cols=189  Identities=19%  Similarity=0.226  Sum_probs=132.7

Q ss_pred             ccceecccchhhhccCCCccccccc---hhchhhhHHHh-hhcccCHHHHHHHHHHHhc-c-ccceEEEcccCCchhHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHF---VMAQNVLWSII-ILKLADIGAAVGHQFRLIG-E-WAHLVTVHSIAGPGPLQE  150 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~---~igqr~~~si~-dlKl~DI~nTv~~~~~~~~-~-~~d~vTvH~~~G~~ml~~  150 (434)
                      +|-...+-+...|...|...+....   ..-.+.++.++ |+|++|||||+..+++.+. . ++|++|||+++|.+||++
T Consensus        52 ~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~~~G~d~l~~  131 (261)
T TIGR02127        52 EYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSPYLGLDSLRP  131 (261)
T ss_pred             CcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHH
Confidence            4455666667777777654442211   11112234445 9999999999999999877 4 599999999999999999


Q ss_pred             HHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-----CCc
Q psy4093         151 IQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-----LIA  225 (434)
Q Consensus       151 a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-----gv~  225 (434)
                      +++.+.+.+  +.+++++.||+|++   .+++++++...                 ...++.|+++|+++.+     |++
T Consensus       132 ~~~~~~~~~--~~v~VlvlTSnp~~---~~lq~~~~~~~-----------------~~~~~~V~~~a~~~~~~~~~~g~~  189 (261)
T TIGR02127       132 FLEYARANG--AGIFVLVKTSNPGG---ADLQDLRVSDG-----------------RTVYEEVAELAGELNESPGDCSSV  189 (261)
T ss_pred             HHHHHhhcC--CEEEEEEeCCCCCH---HHHhhhhccCC-----------------CCHHHHHHHHHHHhccccCcCCce
Confidence            999876555  56666666776643   34433222210                 0135789999998864     489


Q ss_pred             eEEe---Cccchh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCC-EEEeCCcccCCCCHHHHHHH
Q psy4093         226 GLVC---QAPSVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGAD-LGVVGRGITQAPDPVEAARR  294 (434)
Q Consensus       226 GvVc---s~~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD-~IVVGR~It~A~DP~~aa~~  294 (434)
                      |+||   ++.|+.    .+ +++.+||||||++  |...+||.    .+.+..|+| +||||||||+|.||.+++++
T Consensus       190 GvV~gAT~p~e~~~iR~~~-~~~~il~PGigaq--G~~~~d~~----r~~~~~g~~~~ivvgR~I~~a~~p~~a~~~  259 (261)
T TIGR02127       190 GAVVGATSPGDLLRLRIEM-PTAPFLVPGFGAQ--GAEAADLR----GLFGADGSGLLINSSRGVLFAGPRSSALVA  259 (261)
T ss_pred             EEEECCCCHHHHHHHHHhC-CCCeEEeCCcCCC--CCCHHHHH----HHhcccCCCEEEEcCHHHhcCCChHHHHHh
Confidence            9999   777764    44 7899999999998  55555552    111146888 99999999999999887653

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.

>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP

Probab=99.93  E-value=3.6e-27  Score=226.17  Aligned_cols=187  Identities=30%  Similarity=0.382  Sum_probs=132.5

Q ss_pred             cceecccchhhhccCC----CccccccchhchhhhHHHh-hhcccCHHHHHHHHHH---Hhcc-ccceEEEcccCCchhH
Q psy4093          78 FDSVMHYSRKAFSKNG----DDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFR---LIGE-WAHLVTVHSIAGPGPL  148 (434)
Q Consensus        78 y~SVMhYg~~aFs~~g----~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~---~~~~-~~d~vTvH~~~G~~ml  148 (434)
                      |-.+..-|...|...|    ..++......    .+.++ |+|++|||||+..+++   .... ++|++|||+++|.+||
T Consensus        25 ~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~----~~~I~~D~K~~Dig~t~~~~~~~~~~~~~~gaD~vTv~~~~G~~tl  100 (226)
T PF00215_consen   25 YVDIIKVGTPLFLAYGLEALPEIIEELKER----GKPIFLDLKLGDIGNTVARYAEAGFAAFELGADAVTVHPFAGDDTL  100 (226)
T ss_dssp             GSSEEEEEHHHHHHHCHHHHHHHHHHHHHT----TSEEEEEEEE-SSHHHHHHHHHSCHHHHTTTESEEEEEGTTHHHHH
T ss_pred             cceEEEEChHHHhcCChhhHHHHHHHHHHh----cCCEeeeeeecccchHHHHHHHHhhhhhcCCCcEEEEeccCCHHHH
Confidence            4455555566666666    4444333222    23445 9999999999999997   3444 7999999999999999


Q ss_pred             HHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcC-CCCceE
Q psy4093         149 QEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFP-GLIAGL  227 (434)
Q Consensus       149 ~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~-~gv~Gv  227 (434)
                      +++++.+++.+. +++++|+.||++++.+.+++   + ....                   .+.+.+.+..+. .+++|+
T Consensus       101 ~~~~~~a~~~~~-~~~~~v~~~s~~~~~~~~~~---~-~~~~-------------------~~~v~~~~~~~~~~g~~G~  156 (226)
T PF00215_consen  101 EAAVKAAKKHGR-KGVFVVDLLSNPDSEDLQDL---G-LGVD-------------------QEIVHRAADLAAKAGVDGI  156 (226)
T ss_dssp             HHHHHHHHHTTE-SEEEEEESTTSTTHHHHHHH---H-CTHH-------------------HHHHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHhccCC-cceEEEEecCCCCHHHHHhh---h-cccH-------------------HHHHHHHHHhhccccccCc
Confidence            999999876641 47999999999654433331   1 1110                   122333333332 269999


Q ss_pred             EeCccchh--hcCCCceEecCcccc-cCCCCCCCCc-c-CCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093         228 VCQAPSVL--ASNPGLLQLTPGIHL-NQTGDNKGQQ-Y-NGPTDVITLRGADLGVVGRGITQAPDPVEAARRY  295 (434)
Q Consensus       228 Vcs~~e~~--~~~~~~l~vtPGIr~-~~~~~~~~dQ-~-~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i  295 (434)
                      |||+.+..  ..++++.+++||||+ +  +...|+| . .+|..+. ..|+|++||||+||+|+||.+++++|
T Consensus       157 v~~~~~~~~~~~~~~~~~l~PGi~~~~--~~~~~~~~~~~~~~~~~-~~g~d~iiVGR~I~~a~dp~~aa~~i  226 (226)
T PF00215_consen  157 VCSATEPAIRKAGPNFKILTPGIGAIQ--GAVAGGQKRATTPAAAK-QAGADIIIVGRAITKAEDPREAAEEI  226 (226)
T ss_dssp             EETTTCHHHHHHTTTSEEEEESBSSST--CEECSSHHCHHHHHHHH-HTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred             ccccccccccccccchhhccCCCCccc--ccCcccccccccHHHHH-hcCCEEEEEChHHhCCCCHHHHHhcC
Confidence            99998762  227899999999998 5  5555666 3 4666667 79999999999999999999999987

In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....

>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=99.93  E-value=5e-26  Score=217.90  Aligned_cols=181  Identities=17%  Similarity=0.180  Sum_probs=130.6

Q ss_pred             ccceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhccccceEEEcccCCchhHHHHHHHh
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRIS  155 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~  155 (434)
                      ++..+..-|...|...|...+.......  .++.+| |+|+||||||+..++.  ..++|++|+|+.+|.+||+++++++
T Consensus        27 ~~v~~iKVG~~L~~~~G~~~i~~lk~~~--~~~~IflDlKl~DIp~tv~~~~~--~~Gad~~tv~~~~g~~~i~~a~~~a  102 (218)
T PRK13305         27 DHVDIVEAGTILCLNEGLGAVKALREQC--PDKIIVADWKVADAGETLAQQAF--GAGANWMTIICAAPLATVEKGHAVA  102 (218)
T ss_pred             ccCCEEEECHHHHHHhCHHHHHHHHHhC--CCCEEEEEeecccChHHHHHHHH--HcCCCEEEEecCCCHHHHHHHHHHH
Confidence            3445677778888877765554432221  134456 9999999999988643  4479999999999999999999976


Q ss_pred             hhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchh
Q psy4093         156 DELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVL  235 (434)
Q Consensus       156 ~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~  235 (434)
                      .+.+....+.+++++|+   ...+++.++|+.                       +.++++|..+.+  .|+|||++|+.
T Consensus       103 ~~~~~~~~~~llgV~t~---~~~~~l~~~g~~-----------------------~~v~h~a~~a~~--~G~v~s~~e~~  154 (218)
T PRK13305        103 QRCGGEIQIELFGNWTL---DDARDWHRIGVR-----------------------QAIYHRGRDAQA--SGQQWGEADLA  154 (218)
T ss_pred             HhcCCcccceEEEecCc---chHHHHHHcCCH-----------------------HHHHHHHHHHHH--hCCCCCHHHHH
Confidence            54332112456777644   234666555542                       256667776654  24699999985


Q ss_pred             ----hcCCCc-eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         236 ----ASNPGL-LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       236 ----~~~~~~-l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                          .++++| ++||||||+.  +...+||...          |++|||||||+|+||.+++++|++ +|++
T Consensus       155 ~ir~~~~~~~~i~VtpGIr~~--~~~~~dq~rv----------d~iVVGR~It~A~dP~~aa~~i~~-~i~~  213 (218)
T PRK13305        155 RMKALSDIGLELSITGGITPA--DLPLFKDIRV----------KAFIAGRALAGAANPAQVAADFHA-QIDA  213 (218)
T ss_pred             HHHHHhCCCCcEEEeCCcCcc--ccccccccCC----------CEEEECCcccCCCCHHHHHHHHHH-HHHH
Confidence                577889 9999999998  6656666433          999999999999999999999998 5554

>KOG1377|consensus

Probab=99.92  E-value=1.2e-25  Score=214.82  Aligned_cols=184  Identities=36%  Similarity=0.601  Sum_probs=159.5

Q ss_pred             cccccchhchhhhHHHh-hhcccCHHHHHHHHHH----HhccccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEe
Q psy4093          96 TIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL  170 (434)
Q Consensus        96 Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~----~~~~~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~l  170 (434)
                      +......+++.+.+.|+ |.|++|||||+..+|+    .+..|+|++++|+..|++.+.+..+...+.+..++++++++|
T Consensus        73 ~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~~g~~rk~~k~~~egG~lllAem  152 (261)
T KOG1377|consen   73 SGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGIIKGLNRKLLKDHGEGGVLLLAEL  152 (261)
T ss_pred             cHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHHHHHhhhccccCCCCceEEEEEe
Confidence            33344578889999999 9999999999999999    466699999999999999999887665443334789999999


Q ss_pred             CCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchhhcCCCceEecCcccc
Q psy4093         171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHL  250 (434)
Q Consensus       171 ss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~~~~~~~l~vtPGIr~  250 (434)
                      +++++|...+|.+                            ...++++...+.+.|+||....+  ..+++++.|||+.+
T Consensus       153 s~kg~L~~~dy~e----------------------------a~~aI~ee~~d~~~G~v~g~~~~--ldrq~l~~tpgv~~  202 (261)
T KOG1377|consen  153 SSKGSLITGDYTE----------------------------AATAIAEEDIDFVNGFVAGSIVA--LDRQELIMTPGVEL  202 (261)
T ss_pred             ccCCceeehhHHH----------------------------HHHHHHHhhhchheeEEeeeeee--ccHHhhccCCCCcc
Confidence            9999998888875                            45667777666799999999776  45668899999999


Q ss_pred             cCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy4093         251 NQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKK  309 (434)
Q Consensus       251 ~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~  309 (434)
                      ..++|++|+||.+|.++|...|+|++||||.||.++.|++++++||+..|.||.+|+.+
T Consensus       203 d~~~d~lgqqy~~p~e~I~~~~~dIiivgrglt~a~~~~~~~e~YRq~~w~a~~~r~~~  261 (261)
T KOG1377|consen  203 DAAGDNLGQQYRLPVEVIVSLGSDIIIVGRGLTAASKPVQAIERYRQAYWAAYQRRLGQ  261 (261)
T ss_pred             chhhcchhhhhcCcHHhheecCceEEEEcCccccccCcHHHHHHHHHHHHHHHHHhhcC
Confidence            98899999999999999967999999999999999999999999999999999999863

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=99.88  E-value=5.6e-23  Score=196.67  Aligned_cols=181  Identities=18%  Similarity=0.129  Sum_probs=132.5

Q ss_pred             ccceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhccccceEEEcccCCchhHHHHHHHh
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRIS  155 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~  155 (434)
                      ++..+..-|...|...|..++......+  .+..++ |+|++|||||+...  ....++|++|||+.+|.+|+++++++.
T Consensus        27 ~~v~~~kvG~~l~~~~G~~~i~~lk~~~--~~~~v~~DLK~~Di~~~v~~~--~~~~Gad~vTvH~~a~~~~i~~~~~~~  102 (216)
T PRK13306         27 EEVDIIEVGTILLLAEGMKAVRVLRALY--PDKIIVADTKIADAGKILAKM--AFEAGADWVTVICAAHIPTIKAALKVA  102 (216)
T ss_pred             ccCCEEEEChHHHHHhCHHHHHHHHHHC--CCCEEEEEEeecCCcHHHHHH--HHHCCCCEEEEeCCCCHHHHHHHHHHH
Confidence            3446677777777777765554332221  123345 99999999999976  334489999999999999999999987


Q ss_pred             hhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchh
Q psy4093         156 DELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVL  235 (434)
Q Consensus       156 ~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~  235 (434)
                      ++.|   ..++|+.+++.   +.+.+. .+....                   ..+.+++++..+.  ++|+|||++|+.
T Consensus       103 ~~~g---~~~~V~llts~---~~~~l~-~~~~~~-------------------~~~~vl~~a~~~~--~~G~v~s~~~~~  154 (216)
T PRK13306        103 KEFN---GEIQIELYGNW---TWEQAQ-QWRDAG-------------------ISQVIYHRSRDAQ--LAGVAWGEKDLN  154 (216)
T ss_pred             HHcC---CEEEEEECCCC---CHHHHH-HHHcCC-------------------hhhhhhhhhhhhh--hcCCCCCHHHHH
Confidence            6555   37888888872   333332 122111                   1257888888874  899999998885


Q ss_pred             ----hcCCCc-eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         236 ----ASNPGL-LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       236 ----~~~~~~-l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                          .++++| +.|+||||++           |-.... +.|||++|||||||+|+||.+++++|++ +|++
T Consensus       155 ~ir~~~~~~~~i~V~gGI~~~-----------~~~~~~-~~~ad~~VvGr~I~~a~dp~~a~~~i~~-~i~~  213 (216)
T PRK13306        155 KVKKLSDMGFKVSVTGGLVVE-----------DLKLFK-GIPVKTFIAGRAIRGAADPAAAARAFKD-EIAK  213 (216)
T ss_pred             HHHHHhcCCCeEEEcCCCCHh-----------hHHHHh-cCCCCEEEECCcccCCCCHHHHHHHHHH-HHHh
Confidence                456788 9999999986           222234 6799999999999999999999999998 5544

>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed

Probab=99.86  E-value=2.3e-21  Score=191.73  Aligned_cols=176  Identities=22%  Similarity=0.217  Sum_probs=125.1

Q ss_pred             ccceecccchhhhccCCCc-------cccccchhchhhhHHHhhhcccCHHHHHHHHHHHhc--c-ccceEEEcccCCch
Q psy4093          77 DFDSVMHYSRKAFSKNGDD-------TIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIG--E-WAHLVTVHSIAGPG  146 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~-------Ti~~~~~igqr~~~si~dlKl~DI~nTv~~~~~~~~--~-~~d~vTvH~~~G~~  146 (434)
                      |+-.+.+-+...|...|..       ++......|   ...|+|+|++|||||+..+++.+.  . ++|++|||+++|.+
T Consensus        52 ~~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g---~~VilD~K~~DI~nTv~~ya~a~~~~~~g~DavTVhp~~G~d  128 (278)
T PRK00125         52 DLVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAG---VLVIADAKRGDIGSTAEAYAKAAFESPLEADAVTVSPYMGFD  128 (278)
T ss_pred             CcccEEeccHHHHHhcCchhhhHHHHHHHHHHHCC---CcEEEEeecCChHHHHHHHHHHHhcCccCCcEEEECCcCCHH
Confidence            4445566667777776654       332222222   123349999999999999999887  4 59999999999999


Q ss_pred             hHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcc-hhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC---
Q psy4093         147 PLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGF-KAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG---  222 (434)
Q Consensus       147 ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~---  222 (434)
                      ||+++++.+.+.+  +++++++.||++++   .+++++++ ..                  ...++.|++++..+.+   
T Consensus       129 ~l~~~~~~~~~~~--k~vfVlvlTSnp~s---~~lq~~~~~~~------------------~~l~~~V~~~a~~~~~~~~  185 (278)
T PRK00125        129 SLEPYLEYAEEHG--KGVFVLCRTSNPGG---SDLQFLRTADG------------------RPLYQHVADLAAALNNLGN  185 (278)
T ss_pred             HHHHHHHHHHhcC--CEEEEEEeCCCCCH---HHHHhhhccCC------------------CcHHHHHHHHHHHHhcccc
Confidence            9999999886655  56777777777643   34433222 11                  1135788888876432   


Q ss_pred             ---CCce-EEeC--ccchh---hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCC-----EEEeCCcccCCCCH
Q psy4093         223 ---LIAG-LVCQ--APSVL---ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGAD-----LGVVGRGITQAPDP  288 (434)
Q Consensus       223 ---gv~G-vVcs--~~e~~---~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD-----~IVVGR~It~A~DP  288 (434)
                         |.+| |||+  +.|+.   +.-+++.++|||||++         +.+|++++ +.|++     ++.|+|+|+.|.++
T Consensus       186 ~~~g~~G~VVgaT~p~e~~~iR~~~~~~~iL~PGigaQ---------Gg~~~~~~-~~~~~~~~~~l~~~SR~il~a~~~  255 (278)
T PRK00125        186 CGYGSIGLVVGATFPPELAAVRKILGGMPLLIPGIGAQ---------GGDAEATV-RAGGAAGNGGIPNSSRAILYAGPG  255 (278)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHhCCCCeEEeCCcCCC---------CcCHHHHH-HHhhhcCCCEEeecCHHHHcCCCc
Confidence               6889 9999  56664   2324488999999986         56789999 78776     56799999999888

>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily

Probab=99.85  E-value=1.8e-22  Score=194.41  Aligned_cols=111  Identities=39%  Similarity=0.614  Sum_probs=95.4

Q ss_pred             ccCCCCCCcccccCCCCCccccCC-CCCcccccccccCCCCeecEEEcCCc-----------------------------
Q psy4093           5 WKNRPSLNFWEESGQFEGDIMLEG-PERTGVISSIDRWPGGLIPYYIDDDH-----------------------------   54 (434)
Q Consensus         5 ~~~~~~~~~~e~~g~~EGDi~l~~-~~rng~~~~~~rWPn~~VpY~I~~~~-----------------------------   54 (434)
                      |....++|.+....+|||||++++ ..||++..+.+|||| +|||+|++.+                             
T Consensus         9 ~~~~~~~n~~~~~~~~eGDI~l~~~~~R~a~~~~~~~Wp~-~VPY~i~~~~~~~~~~~I~~Am~~~~~~TCirF~~rt~e   87 (230)
T cd04282           9 DQDIFEINLGAGLDLFEGDILLDEGQSRNGLIGDTYRWPF-PIPYILDDSLDLNAKGVILKAFEMYRLKSCVDFKPYEGE   87 (230)
T ss_pred             hhhHHhhcccCCcccccccccCCcccccccccCcccCCCc-ceeEEECCCCCHHHHHHHHHHHHHHHhCCCeeEEECCCC
Confidence            444456777888889999999986 579999999999999 9999998764                             


Q ss_pred             ----------cc----------------------------------------------------------ccccccccCC
Q psy4093          55 ----------FC----------------------------------------------------------TERNFKKYPP   66 (434)
Q Consensus        55 ----------~c----------------------------------------------------------~~~NF~k~~~   66 (434)
                                ||                                                          .++||+|++.
T Consensus        88 ~~yi~i~~~~GC~S~vG~~gg~q~isl~~~C~~~Gti~HEl~HalGf~HEqsRpDRD~yV~I~~~nI~~~~~~nF~k~~~  167 (230)
T cd04282          88 SNYIFFFKGSGCWSMVGDQQGGQNLSIGAGCDYKATVEHEFLHALGFYHEQSRSDRDDYVKIWWDQILSGREHNFNKYDD  167 (230)
T ss_pred             CcEEEEEcCCCeeeccCccCCeEEEEECCCcCCCchHHHHHHHHhCCcccccccccccceEEeecccCchHHHHhhhcCc
Confidence                      23                                                          5679999999


Q ss_pred             CCcccCccccccceecccchhhhccC-CCccccccc-----hhchhhhHHHhhhcc
Q psy4093          67 SEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVPHF-----VMAQNVLWSIIILKL  116 (434)
Q Consensus        67 ~~~~~~g~pYDy~SVMhYg~~aFs~~-g~~Ti~~~~-----~igqr~~~si~dlKl  116 (434)
                      ..++++|+||||+|||||++++||++ +++||+++.     .+|||.++|..|++.
T Consensus       168 ~~~~~~g~pYDy~SIMHY~~~aFs~~~~~pTi~~~~~~~~~~iGqr~~lS~~Di~~  223 (230)
T cd04282         168 SFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQRLDFSDIDLER  223 (230)
T ss_pred             cccccCCCCCCcccccccCCCccccCCCCceeeecCCcccccccccCCCCHHHHHH
Confidence            99999999999999999999999999 899999874     489999998777554

Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.

>KOG1377|consensus

Probab=99.84  E-value=2.3e-22  Score=192.30  Aligned_cols=109  Identities=35%  Similarity=0.512  Sum_probs=105.4

Q ss_pred             ccccChhhhhhhccchhhHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHH-HHHHHHHH
Q psy4093         313 RIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEE-VQKELTAL  391 (434)
Q Consensus       313 ~~~~~~~~r~~~~~~~~~~~l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~-~v~~L~~l  391 (434)
                      |.+++|++|++++.||++++|+.+|.+|++|||++.|+....+++.+|+++||++|.+|+|.++|.||+.+ +++.|..|
T Consensus         1 ~~~~~~~~ra~~~~~~~~~~l~~~m~~kqtnL~~~~d~~~~~~ll~~~~~~Gpf~l~sk~h~di~~df~~~~~~k~L~aL   80 (261)
T KOG1377|consen    1 RVKLTYAERAALTKSPVAKKLLNLMMKKQTNLCLAVDLFLERELLQLALRFGPFILKSKTHSDIFFDFSLFNSGKDLRAL   80 (261)
T ss_pred             CccccHhHHhhhccCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCeEeeccccCceeecccccccHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999988 99999999


Q ss_pred             HhcCCCeeeecCCCCcchhHHHHHhhcCcc
Q psy4093         392 AKQHEFLRSRNGWFSPILSSFSLRFRDDKT  421 (434)
Q Consensus       392 a~k~gf~iFlDlKf~DIpnTV~~a~~~~~~  421 (434)
                      |++|.|.||+|+||+||+|||..||.+|--
T Consensus        81 A~a~~f~I~edrkffDigntvg~qY~gg~~  110 (261)
T KOG1377|consen   81 AQAYAFLIFEDRKFFDIGNTVGLQYKGGPL  110 (261)
T ss_pred             HHHHHHHHHhhhhcccccceeccccccchH
Confidence            999999999999999999999999999743

>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated

Probab=99.77  E-value=2.2e-18  Score=181.60  Aligned_cols=254  Identities=17%  Similarity=0.109  Sum_probs=170.7

Q ss_pred             HHHhhhcccCHHHHHHHHHHHhcc-c-cceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcc
Q psy4093         109 WSIIILKLADIGAAVGHQFRLIGE-W-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGF  186 (434)
Q Consensus       109 ~si~dlKl~DI~nTv~~~~~~~~~-~-~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~  186 (434)
                      +.|.|.|..|| ||+..+++.+.+ + +|.+|||+++|.++++++++..   +  +++|+|+.||+|++.+.+++..   
T Consensus        90 ~vI~DaKrgDI-~T~~~yA~a~f~~~~aDAiTv~pymG~Dsl~pfl~~~---~--kgvfvL~~tSNpga~~~Q~~~~---  160 (477)
T PRK05500         90 PIILDAKHGDL-NTSTIFAKTIFEQWQVDAVTLSPYAGQDHVAPFLVYP---D--KGVFILCHTSNPGAIALQEYPT---  160 (477)
T ss_pred             eEEEEecccCh-HHHHHHHHHHHhhcCCCEEEECCccCccchHHHHhcC---C--CcEEEEEeCCCcCHHHHhhccc---
Confidence            34569999999 599999997775 4 9999999999999999999862   4  7899999999998765444321   


Q ss_pred             hhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCcc--ch-h---hcCCCceEecCcccccCCCCCCCC
Q psy4093         187 KAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAP--SV-L---ASNPGLLQLTPGIHLNQTGDNKGQ  259 (434)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~--e~-~---~~~~~~l~vtPGIr~~~~~~~~~d  259 (434)
                      .            ++      ..++.+++.++.+.. +-.|+|..+.  +. .   ...|+..++.|||+.|        
T Consensus       161 ~------------g~------~ly~~v~~~~~~~~~~~~~g~VvGAT~p~~~~~iR~~~p~~~iL~PGiGAQ--------  214 (477)
T PRK05500        161 P------------EN------PFYLQVVKEAKTWGTPEQLGLEVGTTNPEVLAKIRQIAPERLILLRSIWAE--------  214 (477)
T ss_pred             C------------CC------cHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHHhCCCCEEEccccccC--------
Confidence            0            11      135678888877653 3456666663  22 2   4557888999999964        


Q ss_pred             ccCCHHHHHHHcCCC------EEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhhhhhccch---hh
Q psy4093         260 QYNGPTDVITLRGAD------LGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCR---IS  330 (434)
Q Consensus       260 Q~~TP~~Ai~~~GAD------~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r~~~~~~~---~~  330 (434)
                       ++++++++ ++|+|      +|+|||+|+.|+||.++|+++++ ++++++++..++++.-.+-.-.=-.+..+|   ++
T Consensus       215 -Gg~~~~~~-~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  291 (477)
T PRK05500        215 -KGNLNQIL-TAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLRE-EINQIRQQIVQESSSCDLWTPDVCLLNQHPHQDLI  291 (477)
T ss_pred             -CCCHHHHH-HhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHH-HHHHHHHHhcccCCcccccCccccccccCcHHHHH
Confidence             67889999 99998      99999999999999999999998 889999998766665333222211122233   45


Q ss_pred             HHHHHHh----------hhcCCcEEEEec--CCCHHHHHHHHHHhCCceeEEeEceeee---ecCCHHHHHHHHHHHhcC
Q psy4093         331 STLLDIM----------VKKKSNLCVALD--VTQAKDLLTLTRQLGPHIAVLKTHSDAV---RDFSEEVQKELTALAKQH  395 (434)
Q Consensus       331 ~~l~~~m----------~~k~s~LivAlD--~~~~~~al~la~~lgp~i~~lKvg~dl~---~~~g~~~v~~L~~la~k~  395 (434)
                      +.|++.-          ..++|+..+=+-  +.+++-+..+++.+...+--  ...|.+   .-.|..+...+   |.+.
T Consensus       292 ~~l~~~~al~fG~F~L~SG~~S~~YiD~~~lls~P~~l~~v~~~la~~l~~--~~~D~I~Gia~gGiPlAt~l---A~~l  366 (477)
T PRK05500        292 LQLYDIGCLLFGEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKN--LTFDRIAGIPYGSLPTATGL---ALHL  366 (477)
T ss_pred             HHHHHCCCeEeCcEEECCcCcCCEEEEChhhhcCHHHHHHHHHHHHHHhcc--CCCCEEEEEccchHHHHHHH---HHHh
Confidence            5555541          112456665443  23555555444444433321  122332   22345555444   3457


Q ss_pred             CCeeeecCCC
Q psy4093         396 EFLRSRNGWF  405 (434)
Q Consensus       396 gf~iFlDlKf  405 (434)
                      |.+++.-+|-
T Consensus       367 g~p~v~vRKe  376 (477)
T PRK05500        367 HHPMIFPRKE  376 (477)
T ss_pred             CCCEEEEecC
Confidence            8788888885

>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

Probab=99.74  E-value=2.8e-18  Score=166.58  Aligned_cols=86  Identities=24%  Similarity=0.290  Sum_probs=78.7

Q ss_pred             HHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHH
Q psy4093         333 LLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSF  412 (434)
Q Consensus       333 l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV  412 (434)
                      .+++|..+++|||||||+++.+++++|++++++++|++|+|+++|..+|++++++|++    .+++||+|+|||||||||
T Consensus         3 ~~~~~~~~~~~livaLD~~~~~~~~~~~~~~~~~~~~~Kvg~~l~~~~g~~~~~el~~----~~~~VflDlK~~DIpnT~   78 (240)
T COG0284           3 GLRLMEAMSRRLIVALDVPTEEEALAFVDKLGPTVDFVKVGKPLVAFFGADILEELKA----RGKKVFLDLKLADIPNTV   78 (240)
T ss_pred             hhhhhhhcccCeEEEECCCCHHHHHHHHHHhhccccEEEEchHHHHhccHHHHHHHHH----hCCceEEeeecccchHHH
Confidence            3567888888899999999999999999999999999999999999999999999964    678999999999999999


Q ss_pred             HHHhhcCccc
Q psy4093         413 SLRFRDDKTL  422 (434)
Q Consensus       413 ~~a~~~~~~~  422 (434)
                      ++++++--.+
T Consensus        79 ~~~~~~~~~~   88 (240)
T COG0284          79 ALAAKAAADL   88 (240)
T ss_pred             HHHHHHhhhc
Confidence            9999984433

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=99.73  E-value=1.2e-16  Score=151.94  Aligned_cols=149  Identities=31%  Similarity=0.350  Sum_probs=113.3

Q ss_pred             hhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhH
Q psy4093         112 IILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAIT  190 (434)
Q Consensus       112 ~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~  190 (434)
                      +|+|++||+||....++.+.+ ++|++|+|+.+|.++++++.+..++.|  .++++++.++++..+.  .+..       
T Consensus        58 ~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g--~~~~v~~~~~~~~~~~--~~~~-------  126 (215)
T PRK13813         58 ADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESG--GKVFVVVEMSHPGALE--FIQP-------  126 (215)
T ss_pred             EEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcC--CeEEEEEeCCCCCCCC--CHHH-------
Confidence            499999999999998886666 699999999999999999888887666  5666666665432222  1111       


Q ss_pred             HHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchh-------hcCCCceEecCcccccCCCCCCCCccCC
Q psy4093         191 LELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYNG  263 (434)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~-------~~~~~~l~vtPGIr~~~~~~~~~dQ~~T  263 (434)
                                        .+..++.++.+.  |.+|.++++....       ..+.++.+++|||+++  +       .+
T Consensus       127 ------------------~~~~v~~m~~e~--G~~g~~~~~~~~~~i~~l~~~~~~~~~ivdgGI~~~--g-------~~  177 (215)
T PRK13813        127 ------------------HADKLAKLAQEA--GAFGVVAPATRPERVRYIRSRLGDELKIISPGIGAQ--G-------GK  177 (215)
T ss_pred             ------------------HHHHHHHHHHHh--CCCeEEECCCcchhHHHHHHhcCCCcEEEeCCcCCC--C-------CC
Confidence                              124566666654  6899999884322       2344566799999986  2       24


Q ss_pred             HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                      +.+++ ++|||++|+||+|++++||.++++++++ .|++
T Consensus       178 ~~~~~-~aGad~iV~Gr~I~~~~d~~~~~~~l~~-~~~~  214 (215)
T PRK13813        178 AADAI-KAGADYVIVGRSIYNAADPREAAKAINE-EIRG  214 (215)
T ss_pred             HHHHH-HcCCCEEEECcccCCCCCHHHHHHHHHH-HHhc
Confidence            89999 9999999999999999999999999996 6654

>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2

Probab=99.70  E-value=2.7e-17  Score=161.67  Aligned_cols=89  Identities=22%  Similarity=0.184  Sum_probs=79.5

Q ss_pred             hHHHHHHhhhcCCcEEEEecCCCH-----------HH----HHHHHHHhCCceeEEeEceeeeecCCHHHHHHHH---HH
Q psy4093         330 SSTLLDIMVKKKSNLCVALDVTQA-----------KD----LLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELT---AL  391 (434)
Q Consensus       330 ~~~l~~~m~~k~s~LivAlD~~~~-----------~~----al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~---~l  391 (434)
                      .+||++.|.+|+++|||++|....           +.    .+++++++++++|++|+|+++|.++|+++++.|.   +.
T Consensus         2 ~~kl~~~~~~~~s~lcvglDp~~~~~~~~~~~~~~~~~~~f~~~ii~~l~~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~   81 (261)
T TIGR02127         2 ADRLNERILARRSPLCVGLDPRLELLPEWGLPSSAAGLQAFCLRIIDATAEYAAVVKPQVAFFERFGSEGFKALEEVIAH   81 (261)
T ss_pred             HHHHHHHHHHhCCCEEEEECCChhhcccccccchHHHHHHHHHHHHHhcCCcceEEecCHHHHHhcCHHHHHHHHHHHHH
Confidence            368999999999999999999773           45    4899999999999999999999999999987776   66


Q ss_pred             HhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         392 AKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       392 a~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      ++++||+||+|+|+|||||||+...++
T Consensus        82 ~~~~g~~VilD~K~~DIpnTv~~~a~a  108 (261)
T TIGR02127        82 ARSLGLPVLADVKRGDIGSTASAYAKA  108 (261)
T ss_pred             HHHCCCeEEEEeeccChHHHHHHHHHH
Confidence            778999999999999999999977665

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.

>KOG3714|consensus

Probab=99.68  E-value=9.5e-18  Score=174.59  Aligned_cols=109  Identities=43%  Similarity=0.681  Sum_probs=93.2

Q ss_pred             CCCcccccCCCCCccccC---------CCCCcccccccccCCCCeecEEEcCCc--------------------------
Q psy4093          10 SLNFWEESGQFEGDIMLE---------GPERTGVISSIDRWPGGLIPYYIDDDH--------------------------   54 (434)
Q Consensus        10 ~~~~~e~~g~~EGDi~l~---------~~~rng~~~~~~rWPn~~VpY~I~~~~--------------------------   54 (434)
                      ..+++...+.++||+.+.         ...||+..++.+||||++|||.|++.+                          
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~Wp~~~ipY~i~~~~~~~~r~~i~~A~~~~~~~TCi~F~~~  121 (411)
T KOG3714|consen   42 EADPELNASGPEGDGRLNEQLGRSISKRSRRNGTSNPERRWPNGVIPYYIDGSFTSSQRALIRQAMREIENHTCIRFVER  121 (411)
T ss_pred             cccccccccCccccccccccccccccchhhhhcccChhhcCCCCeeeeEECCCCCHHHHHHHHHHHHHHhhCcceEEEeC
Confidence            466777788899999874         247999999999999999999998874                          


Q ss_pred             --------------cc-----------------------------------------------------------ccccc
Q psy4093          55 --------------FC-----------------------------------------------------------TERNF   61 (434)
Q Consensus        55 --------------~c-----------------------------------------------------------~~~NF   61 (434)
                                    +|                                                           +++||
T Consensus       122 ~~~~~~~~~~~~~~gC~S~VGr~gg~~q~~sl~~~C~~~G~i~HEl~HaLGf~HehsR~DRD~yV~I~~~ni~~~~~~nF  201 (411)
T KOG3714|consen  122 TTPDKDYLIVFTGGGCYSYVGRRGGGQQLLSLGDGCDRFGTIVHELMHALGFWHEHSRPDRDNYVSINWDNIDPGQEYNF  201 (411)
T ss_pred             CCCCcceEEEeCCCcceeeeCccCCCccceecCCCcCcCchhHHHHHHHhhhhhccCcccccCceEEeeccCChhhhhhh
Confidence                          13                                                           57899


Q ss_pred             cccCCCCcccCccccccceecccchhhhccCCCc-cccccch-----hchhhhHHHhhhcccC
Q psy4093          62 KKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDD-TIVPHFV-----MAQNVLWSIIILKLAD  118 (434)
Q Consensus        62 ~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~g~~-Ti~~~~~-----igqr~~~si~dlKl~D  118 (434)
                      +|+++..+++||+||||+|||||++++||+|++. ||+|+..     ||||..++..|++..+
T Consensus       202 ~k~~~~~~~~~~~pYDygSvMHY~~~afs~~~~~~ti~~~~~~~~~~mGqr~~~S~~Di~~iN  264 (411)
T KOG3714|consen  202 EKYSPDEVTTYGVPYDYGSVMHYAPYAFSKNGSLPTIVPKDNGFQNTMGQRERLSFYDIRKIN  264 (411)
T ss_pred             hhcChhhhhccCCcccCCcccccCCcccCcCCCCCceecccccccccccccCcCCHHHHHHHH
Confidence            9999999999999999999999999999999964 9999873     8999999877755433

>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily

Probab=99.67  E-value=1.3e-17  Score=158.08  Aligned_cols=60  Identities=40%  Similarity=0.568  Sum_probs=52.9

Q ss_pred             ccccccccCCCCcccCccccccceecccchhhhccCC-Cccccccc-------hhchhhhHHHhhhcc
Q psy4093          57 TERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNG-DDTIVPHF-------VMAQNVLWSIIILKL  116 (434)
Q Consensus        57 ~~~NF~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~g-~~Ti~~~~-------~igqr~~~si~dlKl  116 (434)
                      .++||+|++...++.+|+||||+|||||++++||+++ .+||+|+.       .+|||.++|..|++.
T Consensus       125 ~~~nF~k~~~~~~~~~g~pYDy~SiMHY~~~aFs~~~~~~Ti~p~~~~~~~~~~iGqr~~lS~~Di~~  192 (200)
T cd04281         125 QEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNGVRPEIGQRTRLSEGDIIQ  192 (200)
T ss_pred             hhhhhhhcCccccccCCCccCCCccccCCCCccccCCCCCceEECCCcccccccccccCCCCHHHHHH
Confidence            5679999999999999999999999999999999987 68999874       389999999777654

BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.

>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=99.65  E-value=1.5e-16  Score=152.70  Aligned_cols=75  Identities=12%  Similarity=0.015  Sum_probs=69.4

Q ss_pred             CCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093         341 KSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFR  417 (434)
Q Consensus       341 ~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~  417 (434)
                      ..+||||||+++.++|++|++++.+++.++|+|++||.++|+++|++|++..  .|+.||+|+|||||||||++++.
T Consensus         3 ~~~livALD~~~~~~A~~l~~~l~~~v~~iKVG~~L~~~~G~~~i~~lk~~~--~~~~IflDlKl~DIp~tv~~~~~   77 (218)
T PRK13305          3 RPLLQLALDHTSLEAAQRDVTLLKDHVDIVEAGTILCLNEGLGAVKALREQC--PDKIIVADWKVADAGETLAQQAF   77 (218)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHccccCCEEEECHHHHHHhCHHHHHHHHHhC--CCCEEEEEeecccChHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999997521  28999999999999999999876

>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

Probab=99.57  E-value=2.4e-15  Score=143.93  Aligned_cols=72  Identities=25%  Similarity=0.236  Sum_probs=67.6

Q ss_pred             EEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhcC
Q psy4093         344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDD  419 (434)
Q Consensus       344 LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~~  419 (434)
                      ||||||+++.++++++++++++++|++|+|+++|.++|++++++|++    .+++||+|+|||||||||+.+++..
T Consensus         1 livALD~~~~~~a~~i~~~~~~~v~~iKvg~~l~~~~g~~~i~~l~~----~~~~i~~DlK~~DIg~tv~~~~~~~   72 (216)
T cd04725           1 LIVALDPPDEEFALALIDALGPYVCAVKVGLELFEAAGPEIVKELRE----LGFLVFLDLKLGDIPNTVAAAAEAL   72 (216)
T ss_pred             CEEEeCCCCHHHHHHHHHhcCCcccEEEECHHHHHhcCHHHHHHHHH----CCCcEEEEeecCchHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999964    6799999999999999999986543

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=99.53  E-value=6.7e-15  Score=140.39  Aligned_cols=71  Identities=32%  Similarity=0.416  Sum_probs=66.5

Q ss_pred             EEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       344 LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      ||||||+++.++++++++++++++|++|+|.++|.++|++++++|++    .+++||+|+|+||||||++++++.
T Consensus         1 ~ivAlD~~~~~~a~~~~~~~~~~v~~iKig~~l~~~~G~~~v~~l~~----~~~~v~lD~K~~Dig~t~~~~~~~   71 (213)
T TIGR01740         1 LIVALDVTTKDEALDLADSLGPEIEVIKVGIDLLLDGGDKIIDELAK----LNKLIFLDLKFADIPNTVKLQYES   71 (213)
T ss_pred             CEEECCCCCHHHHHHHHHhcCCcCcEEEECHHHHHhcCHHHHHHHHH----cCCCEEEEEeecchHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999964    678999999999999999988543

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=99.51  E-value=2.1e-14  Score=137.59  Aligned_cols=76  Identities=11%  Similarity=0.049  Sum_probs=68.8

Q ss_pred             cCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093         340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFR  417 (434)
Q Consensus       340 k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~  417 (434)
                      ++.+||||||+++.++|++|++++.+++.++|+|.+||.++|++++++|+++.  -|+.||+|+|+|||||||+.++.
T Consensus         2 ~~~~l~vALD~~~~~~a~~l~~~l~~~v~~~kvG~~l~~~~G~~~i~~lk~~~--~~~~v~~DLK~~Di~~~v~~~~~   77 (216)
T PRK13306          2 SKPLLQIALDNQDLESAIEDAKKVAEEVDIIEVGTILLLAEGMKAVRVLRALY--PDKIIVADTKIADAGKILAKMAF   77 (216)
T ss_pred             CCCcEEEEecCCCHHHHHHHHHHccccCCEEEEChHHHHHhCHHHHHHHHHHC--CCCEEEEEEeecCCcHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999997521  28999999999999999995543

>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP

Probab=99.51  E-value=1.5e-14  Score=139.00  Aligned_cols=72  Identities=22%  Similarity=0.232  Sum_probs=64.3

Q ss_pred             CcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCC----HHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093         342 SNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFS----EEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFR  417 (434)
Q Consensus       342 s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g----~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~  417 (434)
                      ++||||||+++.+++++++++++++++++|+|.++|.++|    ..+++.|    ++++++||+|+|+|||||||+++++
T Consensus         1 ~~L~vALD~~~~~~a~~i~~~~~~~v~~iKvG~~l~~~~G~~~l~~~i~~l----~~~~~~I~~D~K~~Dig~t~~~~~~   76 (226)
T PF00215_consen    1 SKLQVALDPTDLEEALRIADELGDYVDIIKVGTPLFLAYGLEALPEIIEEL----KERGKPIFLDLKLGDIGNTVARYAE   76 (226)
T ss_dssp             -EEEEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHHHHHCHHHHHHHHHHH----HHTTSEEEEEEEE-SSHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHhcCcceEEEEChHHHhcCChhhHHHHHHHH----HHhcCCEeeeeeecccchHHHHHHH
Confidence            4799999999999999999999999999999999999999    6666666    4578999999999999999999996

In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....

>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site

Probab=99.48  E-value=8.9e-15  Score=136.38  Aligned_cols=109  Identities=35%  Similarity=0.542  Sum_probs=85.7

Q ss_pred             CccccCCCCCCcccccCCCCCccccCCCCCcccccccccCCCCeecEEEcCCccc-------------------------
Q psy4093           2 LSLWKNRPSLNFWEESGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFC-------------------------   56 (434)
Q Consensus         2 ~~~~~~~~~~~~~e~~g~~EGDi~l~~~~rng~~~~~~rWPn~~VpY~I~~~~~c-------------------------   56 (434)
                      +..|++.++++|.|...  +.|.+.- ....|+++...|. ++..+-.+...  |                         
T Consensus        24 ~~~w~~~TcIrF~~~~~--~~~~I~f-~~~~Gc~S~vG~~-~~~q~i~l~~~--c~~~g~v~HE~~HalG~~HEh~R~DR   97 (180)
T cd04280          24 MREIESNTCIRFVPRTT--EKDYIRI-VKGSGCWSYVGRV-GGRQVVSLGSG--CFSLGTIVHELMHALGFYHEQSRPDR   97 (180)
T ss_pred             HHHHHhCCcceEEECCC--CCcEEEE-EcCCCcceecCcc-CCceeEEeCCC--cCcCchhHHHHHHHhcCcchhccccc
Confidence            36799999999999876  5554432 2237888877766 44445555432  2                         


Q ss_pred             --------------ccccccccCCCCcccCccccccceecccchhhhccCCCccccccch----hchhhhHHHhhhcc
Q psy4093          57 --------------TERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFV----MAQNVLWSIIILKL  116 (434)
Q Consensus        57 --------------~~~NF~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~g~~Ti~~~~~----igqr~~~si~dlKl  116 (434)
                                    .++||+|++...+++||.||||+|||||++++|+++|++||.|+..    +|++..+|..|+|.
T Consensus        98 D~yv~i~~~ni~~~~~~nf~~~~~~~~~~~~~~YDy~SiMhY~~~~fs~~~~~ti~~~~~~~~~~g~~~~~S~~D~~~  175 (180)
T cd04280          98 DDYVTINWENIQPGYEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNGKPTIVPKDPGYQIIGQREGLSFLDIKK  175 (180)
T ss_pred             CCeEEEeecccChhHHHHhhhcCcccccccCCcCCcceEeccCCcccccCCCceEEECCchhhcccCCCCCCHHHHHH
Confidence                          5779999999999999999999999999999999999999999863    68999998777654

Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.

>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily

Probab=99.43  E-value=2e-14  Score=134.50  Aligned_cols=107  Identities=31%  Similarity=0.400  Sum_probs=80.3

Q ss_pred             CccccCCCCCCcccccCCCCCccccCCCCCcccccccccCCCCeecEEEcCCccc-------------------------
Q psy4093           2 LSLWKNRPSLNFWEESGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFC-------------------------   56 (434)
Q Consensus         2 ~~~~~~~~~~~~~e~~g~~EGDi~l~~~~rng~~~~~~rWPn~~VpY~I~~~~~c-------------------------   56 (434)
                      +++|++.++++|.+...  |.|.+.- ....||++...|.. +..+..|... +|                         
T Consensus        26 ~~~~~~~TCirF~~~~~--~~~yi~~-~~~~gC~S~vG~~g-g~q~i~l~~~-~C~~~G~i~HEl~HaLG~~HEhsRpDR  100 (182)
T cd04283          26 MQEFETLTCVRFVPRTT--ERDYLNI-ESRSGCWSYIGRQG-GRQTVSLQKQ-GCMYKGIIQHELLHALGFYHEQTRSDR  100 (182)
T ss_pred             HHHHHhCCceeeEECCC--CCcEEEE-EcCCCceEecCccC-CceeEecCCC-CcCccchHHHHHHHHhCCccccccccc
Confidence            46899999999988753  5565432 34568888777654 3334444321 22                         


Q ss_pred             --------------ccccccccCCCCcccCccccccceecccchhhhccCCCccccccc----hhchhhhHHHhhhcc
Q psy4093          57 --------------TERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHF----VMAQNVLWSIIILKL  116 (434)
Q Consensus        57 --------------~~~NF~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~g~~Ti~~~~----~igqr~~~si~dlKl  116 (434)
                                    .++||+|++.   +++|+||||+|||||++++||++|++||+|+.    .+|||..+|..|+|.
T Consensus       101 D~yV~I~~~nI~~~~~~nF~~~~~---~~~~~pYDy~SiMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~  175 (182)
T cd04283         101 DKYVRINWENIIPDQLYNFDKQDT---NNLGTPYDYSSVMHYGRYAFSINGKPTIVPIPDPNVPIGQRQGMSNLDILR  175 (182)
T ss_pred             CceEEEehhhcCchHHhhhhhccc---cccCCcccceeeeccCCcccccCCCCeEEECCcccccccCCCCCCHHHHHH
Confidence                          6789999974   46899999999999999999999999999985    489999999777654

Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=99.39  E-value=2e-12  Score=124.83  Aligned_cols=148  Identities=18%  Similarity=0.043  Sum_probs=107.3

Q ss_pred             hhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhH
Q psy4093         112 IILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAIT  190 (434)
Q Consensus       112 ~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~  190 (434)
                      +|+|++  +++....++.+.+ ++|++|+|+-++..|+..+++..++.|   ...+|+...+ +  ..+++..+  .   
T Consensus        68 lDvHLm--~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G---~~~gval~p~-t--~~e~l~~~--l---  134 (228)
T PTZ00170         68 LDCHLM--VSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAG---MKVGVAIKPK-T--PVEVLFPL--I---  134 (228)
T ss_pred             EEEEEC--CCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC---CeEEEEECCC-C--CHHHHHHH--H---
Confidence            388888  7788888887777 799999999999888888888777666   3466776655 2  33343320  0   


Q ss_pred             HHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCcc---chh----hcCCCceEecCcccccCCCCCCCCccCC
Q psy4093         191 LELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAP---SVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNG  263 (434)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~---e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~T  263 (434)
                              ...       .++.|+-|+...  |.+|..+++.   +..    ..+.-.+.|.|||++.           |
T Consensus       135 --------~~~-------~vD~Vl~m~v~p--G~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~-----------t  186 (228)
T PTZ00170        135 --------DTD-------LVDMVLVMTVEP--GFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLE-----------T  186 (228)
T ss_pred             --------ccc-------hhhhHHhhhccc--CCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHH-----------H
Confidence                    000       124566555432  6889988862   221    2334567889999985           8


Q ss_pred             HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                      +.+++ ++|||++||||+|++++||.++++++++ .+++
T Consensus       187 i~~~~-~aGad~iVvGsaI~~a~d~~~~~~~i~~-~~~~  223 (228)
T PTZ00170        187 IDIAA-DAGANVIVAGSSIFKAKDRKQAIELLRE-SVQK  223 (228)
T ss_pred             HHHHH-HcCCCEEEEchHHhCCCCHHHHHHHHHH-HHHH
Confidence            89999 9999999999999999999999999997 5554

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=99.37  E-value=5.5e-13  Score=128.87  Aligned_cols=73  Identities=21%  Similarity=0.235  Sum_probs=68.0

Q ss_pred             CCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093         341 KSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFR  417 (434)
Q Consensus       341 ~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~  417 (434)
                      .++||+|+|+++.+++++++++++++++++|+|..+|.++|+++++.|++    +|+.||+|+||||||||++..++
T Consensus         2 ~~~lilAlD~~~~~~~l~~~~~~~~~~~~ikvg~~~f~~~G~~~i~~l~~----~~~~i~~D~Kl~Di~~t~~~~i~   74 (230)
T PRK00230          2 DDRLIVALDFPSKEEALAFLDQLDPAVLFVKVGMELFTAGGPQFVRELKQ----RGFKVFLDLKLHDIPNTVAKAVR   74 (230)
T ss_pred             CCCeEEEcCCCCHHHHHHHHHhcCCcccEEEEcHHHHHhcCHHHHHHHHh----cCCCEEEEeehhhccccHHHHHH
Confidence            35899999999999999999999999999999999999999999999964    58999999999999999998644

>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site

Probab=99.36  E-value=1.9e-13  Score=128.53  Aligned_cols=60  Identities=47%  Similarity=0.737  Sum_probs=37.6

Q ss_pred             ccccccccCCCCcccCccccccceecccchhhhccCC-Cccccccc-----hhchhhhHHHhhhcc
Q psy4093          57 TERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNG-DDTIVPHF-----VMAQNVLWSIIILKL  116 (434)
Q Consensus        57 ~~~NF~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~g-~~Ti~~~~-----~igqr~~~si~dlKl  116 (434)
                      .+.||.+++......+++||||+|||||++++|++++ .+||.++.     .+|++..++..|++.
T Consensus       117 ~~~~f~~~~~~~~~~~~~pYD~~SIMHY~~~~~s~~~~~~ti~~~~~~~~~~iG~~~~lS~~D~~~  182 (191)
T PF01400_consen  117 YKHNFDKYPPSEWSTYGSPYDYGSIMHYSSYAFSKNGSQPTITPKDPKYQETIGQRNRLSFTDIKQ  182 (191)
T ss_dssp             SGGGG---SGGGBE-TTS---TT-TT---TTTTBSSTTS-SEEESSTTCTS-GGG-SS--HHHHHH
T ss_pred             hhhhhhccccccccccCCCcCccCeecccCcccccCCCCCeEEecCCCCcccccccCCCCHHHHHH
Confidence            5679999998888899999999999999999999998 89999875     578888888777554

; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....

>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed

Probab=99.35  E-value=1.4e-12  Score=129.44  Aligned_cols=83  Identities=17%  Similarity=0.148  Sum_probs=68.4

Q ss_pred             hHHHHHHhhhcCCcEEEEecCCCHHH----------------HHHHHHHhCCceeEEeEceeeeecCCHH-------HHH
Q psy4093         330 SSTLLDIMVKKKSNLCVALDVTQAKD----------------LLTLTRQLGPHIAVLKTHSDAVRDFSEE-------VQK  386 (434)
Q Consensus       330 ~~~l~~~m~~k~s~LivAlD~~~~~~----------------al~la~~lgp~i~~lKvg~dl~~~~g~~-------~v~  386 (434)
                      ..+|.+.++++.+ |||.||- +.+.                .+++++++++++|++|+|+++|..+|++       +++
T Consensus         3 ~~~l~~~~~~~~~-lcvGlDP-~~~~l~~~~~~~~~~~~~~f~~~ivd~~~~~v~~vK~gla~f~~~G~~G~~~l~~~i~   80 (278)
T PRK00125          3 IDRLREAVARRGS-LCVGLDP-HPSLLPAWGLSGDADGLFEFCRIIVDATADLVAAFKPQIAYFEAHGAEGLAQLERTIA   80 (278)
T ss_pred             HHHHHHHHHhcCC-EEEEECC-ChHhcccccccccHHHHHHHHHHHHHhcCCcccEEeccHHHHHhcCchhhhHHHHHHH
Confidence            3566677777777 9999996 3222                4688999999999999999999999988       444


Q ss_pred             HHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         387 ELTALAKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       387 ~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      .|    ++.|++||+|+|+|||||||+...++
T Consensus        81 ~l----~~~g~~VilD~K~~DI~nTv~~ya~a  108 (278)
T PRK00125         81 YL----REAGVLVIADAKRGDIGSTAEAYAKA  108 (278)
T ss_pred             HH----HHCCCcEEEEeecCChHHHHHHHHHH
Confidence            44    45799999999999999999987765

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=99.30  E-value=3.3e-12  Score=121.45  Aligned_cols=73  Identities=21%  Similarity=0.142  Sum_probs=67.7

Q ss_pred             hcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHh
Q psy4093         339 KKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF  416 (434)
Q Consensus       339 ~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~  416 (434)
                      .|+++||||||+++.++++++++++++++|++|+|..++.++|++++++|++    . ..+|+|+|+|||+||....+
T Consensus         1 ~~~~~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~ir~----~-~~i~~D~k~~di~~~~~~~~   73 (215)
T PRK13813          1 EKDSRIILALDVTDRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEELKR----Y-APVIADLKVADIPNTNRLIC   73 (215)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHHHHh----c-CCEEEEeeccccHHHHHHHH
Confidence            3789999999999999999999999999999999999999999999999964    2 48999999999999998875

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=99.29  E-value=9.3e-12  Score=128.78  Aligned_cols=168  Identities=19%  Similarity=0.216  Sum_probs=105.7

Q ss_pred             ecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhh
Q psy4093          81 VMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDEL  158 (434)
Q Consensus        81 VMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~  158 (434)
                      +..-|...|...|..++......|.  ...++ |+|++|+|+++   ++.+.+ ++|++|||+.+|.++++.+++.+++.
T Consensus       201 ~iKvG~~L~~~~G~~iVk~Lr~~~~--~~~I~~DLK~~Di~~~v---v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~  275 (391)
T PRK13307        201 IIEAGTPLIKKFGLEVISKIREVRP--DAFIVADLKTLDTGNLE---ARMAADATADAVVISGLAPISTIEKAIHEAQKT  275 (391)
T ss_pred             EEEECHHHHHHhCHHHHHHHHHhCC--CCeEEEEecccChhhHH---HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHc
Confidence            6677788887777666644433321  12234 99999999997   333444 79999999999999999999988776


Q ss_pred             CCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCcc----c
Q psy4093         159 GEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAP----S  233 (434)
Q Consensus       159 ~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~----e  233 (434)
                      |    +.++..|.++.+. .+.+.+            +.+.-..          +    ..+.. ...+ +.++.    +
T Consensus       276 G----ikvgVD~lnp~tp-~e~i~~------------l~~~vD~----------V----llht~vdp~~-~~~~~~kI~~  323 (391)
T PRK13307        276 G----IYSILDMLNVEDP-VKLLES------------LKVKPDV----------V----ELHRGIDEEG-TEHAWGNIKE  323 (391)
T ss_pred             C----CEEEEEEcCCCCH-HHHHHH------------hhCCCCE----------E----EEccccCCCc-ccchHHHHHH
Confidence            5    4455557764211 111111            0000000          0    00000 0000 01111    1


Q ss_pred             hhhcCCC-ceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         234 VLASNPG-LLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       234 ~~~~~~~-~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      .+....+ .+.+.+||+++           |+.+++ ++|||++||||+|++|+||.++++++++
T Consensus       324 ikk~~~~~~I~VdGGI~~e-----------ti~~l~-~aGADivVVGsaIf~a~Dp~~aak~l~~  376 (391)
T PRK13307        324 IKKAGGKILVAVAGGVRVE-----------NVEEAL-KAGADILVVGRAITKSKDVRRAAEDFLN  376 (391)
T ss_pred             HHHhCCCCcEEEECCcCHH-----------HHHHHH-HcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence            1122223 46889999976           678999 9999999999999999999999999886

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=99.26  E-value=1.6e-11  Score=127.03  Aligned_cols=139  Identities=12%  Similarity=0.030  Sum_probs=95.3

Q ss_pred             EEEeCCcccC-CCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhhhhhccchhhH-HHHHHhhhcCCcEEEEecCCC
Q psy4093         275 LGVVGRGITQ-APDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISS-TLLDIMVKKKSNLCVALDVTQ  352 (434)
Q Consensus       275 ~IVVGR~It~-A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~l~~~m~~k~s~LivAlD~~~  352 (434)
                      +||||==|.- +.|-.+..+--++..-.|..+-+..+-|.-.+.. +|.. ..||.+. |..++-  ....|+||||+++
T Consensus       108 ~i~~~v~~~~~~~d~~~~~~~ny~at~~ai~~a~~~~p~~~~~~~-~~~~-~~h~~~~~~~~~~~--~~p~L~vALD~~~  183 (391)
T PRK13307        108 VIVASVFIHPTAKDYNKIYQYNYGATKLAIKRALEGFPDVDKVLY-EKDR-ALHPIMGFKVTRLW--DPPYLQVALDLPD  183 (391)
T ss_pred             EEEEEEEcCchhccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHh-hhhc-ccCCccccchhhhc--ccceEEEecCCCC
Confidence            5666655543 4455555554454344444444565555444433 3333 4667432 221111  2467999999999


Q ss_pred             HHHHHHHHHHhCCc-eeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHH-HHHhhcC
Q psy4093         353 AKDLLTLTRQLGPH-IAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSF-SLRFRDD  419 (434)
Q Consensus       353 ~~~al~la~~lgp~-i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV-~~a~~~~  419 (434)
                      .++|++++++++++ ++++|+|.+||.++|++++++|++..  .++.||+|||+||||||| ......|
T Consensus       184 ~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~--~~~~I~~DLK~~Di~~~vv~~~a~aG  250 (391)
T PRK13307        184 LEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVR--PDAFIVADLKTLDTGNLEARMAADAT  250 (391)
T ss_pred             HHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhC--CCCeEEEEecccChhhHHHHHHHhcC
Confidence            99999999999998 88999999999999999999997521  257899999999999995 4555444

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=98.76  E-value=1.3e-08  Score=97.10  Aligned_cols=146  Identities=27%  Similarity=0.257  Sum_probs=94.3

Q ss_pred             hhcccCHHHHHHHHHHHhccccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHH
Q psy4093         113 ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLE  192 (434)
Q Consensus       113 dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~  192 (434)
                      |+|..|-|.+....  ++..++|++||-+.+-..+++.+.+.+++.|    ..+...|.+..++.  +-.+        .
T Consensus        62 D~Kt~D~G~~e~~m--a~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~----~~v~iDl~~~~~~~--~~~~--------~  125 (217)
T COG0269          62 DLKTADAGAIEARM--AFEAGADWVTVLGAADDATIKKAIKVAKEYG----KEVQIDLIGVWDPE--QRAK--------W  125 (217)
T ss_pred             eeeecchhHHHHHH--HHHcCCCEEEEEecCCHHHHHHHHHHHHHcC----CeEEEEeecCCCHH--HHHH--------H
Confidence            99999999885553  4455899999999999999999999998776    35777787632222  1111        1


Q ss_pred             HHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccc----hhh-cCC-CceEecCcccccCCCCCCCCccCCHHH
Q psy4093         193 LKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS----VLA-SNP-GLLQLTPGIHLNQTGDNKGQQYNGPTD  266 (434)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e----~~~-~~~-~~l~vtPGIr~~~~~~~~~dQ~~TP~~  266 (434)
                      |++++...-.           +++...+.  ..|. ..+.+    .+. ... -.+.|+.||.+.           +...
T Consensus       126 l~~~gvd~~~-----------~H~g~D~q--~~G~-~~~~~~l~~ik~~~~~g~~vAVaGGI~~~-----------~i~~  180 (217)
T COG0269         126 LKELGVDQVI-----------LHRGRDAQ--AAGK-SWGEDDLEKIKKLSDLGAKVAVAGGITPE-----------DIPL  180 (217)
T ss_pred             HHHhCCCEEE-----------EEecccHh--hcCC-CccHHHHHHHHHhhccCceEEEecCCCHH-----------HHHH
Confidence            2222222111           01111100  0011 01111    111 111 245788999986           5678


Q ss_pred             HHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHH
Q psy4093         267 VITLRGADLGVVGRGITQAPDPVEAARRYKEVMW  300 (434)
Q Consensus       267 Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~  300 (434)
                      .+ ..|+|++||||.||.|.||.++|++++++.+
T Consensus       181 ~~-~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~  213 (217)
T COG0269         181 FK-GIGADIVIVGRAITGAKDPAEAARKFKEEID  213 (217)
T ss_pred             Hh-cCCCCEEEECchhcCCCCHHHHHHHHHHHHh
Confidence            88 8999999999999999999999999998554

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=98.65  E-value=4.7e-08  Score=92.10  Aligned_cols=76  Identities=13%  Similarity=0.119  Sum_probs=68.1

Q ss_pred             cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcC-CCeeeecCCCCcchhH-HHHHhhcCc
Q psy4093         343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQH-EFLRSRNGWFSPILSS-FSLRFRDDK  420 (434)
Q Consensus       343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~-gf~iFlDlKf~DIpnT-V~~a~~~~~  420 (434)
                      +||||||+++.++++++++.+++.++++|+|..++..+|++.++.|++   ++ ++.|+.|+|++|++++ +..+++.|-
T Consensus         1 ~l~~alD~~~~~~a~~~~~~l~~~v~~iev~~~l~~~~g~~~i~~l~~---~~~~~~i~~d~k~~d~~~~~~~~~~~~Ga   77 (206)
T TIGR03128         1 KLQLALDLLDIEEALELAEKVADYVDIIEIGTPLIKNEGIEAVKEMKE---AFPDRKVLADLKTMDAGEYEAEQAFAAGA   77 (206)
T ss_pred             CeEEEecCCCHHHHHHHHHHcccCeeEEEeCCHHHHHhCHHHHHHHHH---HCCCCEEEEEEeeccchHHHHHHHHHcCC
Confidence            589999999999999999999999999999999999999999999864   33 7899999999999998 777777764


Q ss_pred             c
Q psy4093         421 T  421 (434)
Q Consensus       421 ~  421 (434)
                      .
T Consensus        78 d   78 (206)
T TIGR03128        78 D   78 (206)
T ss_pred             C
Confidence            3

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=98.44  E-value=2.6e-07  Score=86.43  Aligned_cols=126  Identities=25%  Similarity=0.279  Sum_probs=81.1

Q ss_pred             hhcccCHHHHHHHHHHH-hccccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHH
Q psy4093         113 ILKLADIGAAVGHQFRL-IGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITL  191 (434)
Q Consensus       113 dlKl~DI~nTv~~~~~~-~~~~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~  191 (434)
                      |+|+.|++++..   +. ...++|++++|...+.++++.+.+..++.|  . .++++.++..   +..+..+        
T Consensus        59 ~~~v~~~~~~~~---~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g--~-~~~v~~~~~~---t~~e~~~--------  121 (202)
T cd04726          59 DLKTADAGALEA---EMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG--K-EVQVDLIGVE---DPEKRAK--------  121 (202)
T ss_pred             EEEeccccHHHH---HHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC--C-eEEEEEeCCC---CHHHHHH--------
Confidence            899999987632   33 344899999999988877888888776554  2 3344334431   2222111        


Q ss_pred             HHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEE-------------eCccchh---hcCCCceEecCcccccCCCC
Q psy4093         192 ELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLV-------------CQAPSVL---ASNPGLLQLTPGIHLNQTGD  255 (434)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvV-------------cs~~e~~---~~~~~~l~vtPGIr~~~~~~  255 (434)
                                               +...  +++-+.             ++....+   ...+-.+.+++||++.    
T Consensus       122 -------------------------~~~~--~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~~----  170 (202)
T cd04726         122 -------------------------LLKL--GVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITPD----  170 (202)
T ss_pred             -------------------------HHHC--CCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcCHH----
Confidence                                     1110  122221             1112222   1134567889999975    


Q ss_pred             CCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHH
Q psy4093         256 NKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARR  294 (434)
Q Consensus       256 ~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~  294 (434)
                             +..+++ ++|||.+|||++|++++||.+++++
T Consensus       171 -------~i~~~~-~~Gad~vvvGsai~~~~d~~~~~~~  201 (202)
T cd04726         171 -------TLPEFK-KAGADIVIVGRAITGAADPAEAARE  201 (202)
T ss_pred             -------HHHHHH-hcCCCEEEEeehhcCCCCHHHHHhc
Confidence                   678999 9999999999999999999988764

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=98.44  E-value=2.4e-06  Score=80.46  Aligned_cols=160  Identities=20%  Similarity=0.223  Sum_probs=91.8

Q ss_pred             ecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHH-hccccceEEEcccCCchhHHHHHHHhhhh
Q psy4093          81 VMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRL-IGEWAHLVTVHSIAGPGPLQEIQRISDEL  158 (434)
Q Consensus        81 VMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~-~~~~~d~vTvH~~~G~~ml~~a~~~~~~~  158 (434)
                      +...+...|...|.+.+.......  ....+. |+|+.|+++.   .++. ...++|++++|+..+...+..+.+..++.
T Consensus        27 ~iev~~~l~~~~g~~~i~~l~~~~--~~~~i~~d~k~~d~~~~---~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~  101 (206)
T TIGR03128        27 IIEIGTPLIKNEGIEAVKEMKEAF--PDRKVLADLKTMDAGEY---EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKH  101 (206)
T ss_pred             EEEeCCHHHHHhCHHHHHHHHHHC--CCCEEEEEEeeccchHH---HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHc
Confidence            344444455555554443332211  112233 9999999976   2333 34479999999998876777777777655


Q ss_pred             CCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCc-------
Q psy4093         159 GEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQA-------  231 (434)
Q Consensus       159 ~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~-------  231 (434)
                      |    +.++..+.++... .+                                .+..+ ...  |++-+-..+       
T Consensus       102 g----~~~~~~~~~~~t~-~~--------------------------------~~~~~-~~~--g~d~v~~~pg~~~~~~  141 (206)
T TIGR03128       102 G----KEVQVDLINVKDK-VK--------------------------------RAKEL-KEL--GADYIGVHTGLDEQAK  141 (206)
T ss_pred             C----CEEEEEecCCCCh-HH--------------------------------HHHHH-HHc--CCCEEEEcCCcCcccC
Confidence            4    3344444332111 01                                11111 111  223221110       


Q ss_pred             ----c-chh---hcCCC-ceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         232 ----P-SVL---ASNPG-LLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       232 ----~-e~~---~~~~~-~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                          . ...   ..-+. .+.++.||.+.           ++.+.+ ++|+|.++|||.|++++||.++++++++
T Consensus       142 ~~~~~~~i~~l~~~~~~~~i~v~GGI~~~-----------n~~~~~-~~Ga~~v~vGsai~~~~d~~~~~~~l~~  204 (206)
T TIGR03128       142 GQNPFEDLQTILKLVKEARVAVAGGINLD-----------TIPDVI-KLGPDIVIVGGAITKAADPAEAARQIRK  204 (206)
T ss_pred             CCCCHHHHHHHHHhcCCCcEEEECCcCHH-----------HHHHHH-HcCCCEEEEeehhcCCCCHHHHHHHHHh
Confidence                0 001   11112 23457888764           578999 9999999999999999999999999875

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3

Probab=98.43  E-value=5.4e-08  Score=91.94  Aligned_cols=49  Identities=24%  Similarity=0.266  Sum_probs=39.5

Q ss_pred             ccccccCCCCcccCccccccceecccc-hhhhccCCCccccccchhchhhhHHHhhhcc
Q psy4093          59 RNFKKYPPSEITDFGVGYDFDSVMHYS-RKAFSKNGDDTIVPHFVMAQNVLWSIIILKL  116 (434)
Q Consensus        59 ~NF~k~~~~~~~~~g~pYDy~SVMhYg-~~aFs~~g~~Ti~~~~~igqr~~~si~dlKl  116 (434)
                      .||+|++..  ..++.||||+|||||+ +++|+++|++|       +++..+|..|+++
T Consensus       143 ~~f~~~~~~--~~~~~~yD~~SIMHY~~~~~~t~~g~~t-------~~~~~lS~~D~~~  192 (198)
T cd04327         143 NVFAKLDDG--DVAYSPYDPDSIMHYPFPGSLTLDGEEV-------PPNRTLSDKDKAF  192 (198)
T ss_pred             hhhhccccc--cccCCCCCcHHHHcCCCcHHhhcCCccc-------CCCCCCCHHHHHH
Confidence            789998753  4589999999999999 89999999887       4556677666443

A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=98.42  E-value=3.5e-07  Score=85.55  Aligned_cols=75  Identities=13%  Similarity=0.147  Sum_probs=65.8

Q ss_pred             cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHH-HHHhhcC
Q psy4093         343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSF-SLRFRDD  419 (434)
Q Consensus       343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV-~~a~~~~  419 (434)
                      .||+|+|+++.++++++++.+.+.+.++|+|..++..+|+++++.+++.  ..+++|+.|+|++|++++. ..+...|
T Consensus         2 ~~~~a~d~~~~~~~~~~~~~l~~~i~~ieig~~~~~~~g~~~i~~i~~~--~~~~~i~~~~~v~~~~~~~~~~~~~aG   77 (202)
T cd04726           2 LLQVALDLLDLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREA--FPDKIIVADLKTADAGALEAEMAFKAG   77 (202)
T ss_pred             ceEEEEcCCCHHHHHHHHHHhhhcCCEEEcCCHHHHHhCHHHHHHHHHH--CCCCEEEEEEEeccccHHHHHHHHhcC
Confidence            4899999999999999999999999999999999999999999998642  1489999999999999995 4445544

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=97.69  E-value=0.00023  Score=74.96  Aligned_cols=44  Identities=30%  Similarity=0.538  Sum_probs=38.0

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +.+..||.++           +..+++ ++|||.++|||.|++++||.++++++++
T Consensus       165 I~a~GGI~~~-----------n~~~~l-~aGAdgv~vGsaI~~~~d~~~~~~~l~~  208 (430)
T PRK07028        165 IAVAGGLDAE-----------TAAKAV-AAGADIVIVGGNIIKSADVTEAARKIRE  208 (430)
T ss_pred             EEEECCCCHH-----------HHHHHH-HcCCCEEEEChHHcCCCCHHHHHHHHHH
Confidence            4567788764           457888 9999999999999999999999999887

>PLN02334 ribulose-phosphate 3-epimerase

Probab=97.45  E-value=0.0017  Score=62.69  Aligned_cols=47  Identities=21%  Similarity=0.277  Sum_probs=40.6

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                      +.+..||.+.           +..+.+ ++|||.+|||++|++++||.++++++++ .|+
T Consensus       177 I~a~GGI~~e-----------~i~~l~-~aGad~vvvgsai~~~~d~~~~~~~l~~-~~~  223 (229)
T PLN02334        177 IEVDGGVGPS-----------TIDKAA-EAGANVIVAGSAVFGAPDYAEVISGLRA-SVE  223 (229)
T ss_pred             EEEeCCCCHH-----------HHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHHHH-HHH
Confidence            5678899875           678888 9999999999999999999999999986 443

>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated

Probab=97.38  E-value=0.00029  Score=75.32  Aligned_cols=83  Identities=12%  Similarity=0.053  Sum_probs=64.7

Q ss_pred             hHHHHHHhhhcCCcEEEEecCC------------C----HHHHHHHHHHhCCceeEEeEceeeeecCCHHHH---HHHHH
Q psy4093         330 SSTLLDIMVKKKSNLCVALDVT------------Q----AKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQ---KELTA  390 (434)
Q Consensus       330 ~~~l~~~m~~k~s~LivAlD~~------------~----~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v---~~L~~  390 (434)
                      ..+|.+-+.++++.|||.||-.            +    .+=...+++.+.+++|.+|..+-+|..+|.+.+   +++.+
T Consensus         4 ~~~l~~~~~~~~s~LcvGLDP~~~~lp~~~~~~~~~~~~~~f~~~ii~at~~~v~a~Kp~~afye~~G~~G~~~l~~~~~   83 (477)
T PRK05500          4 FDKLTQAIAQNQSLLVVGLDPNPEMMPGRYSSQSLIQQLWTWLKFIIEETADLVCAYKPTLGFYQALGSPGLELLLEVLA   83 (477)
T ss_pred             HHHHHHHHHHhCCCEEEEECCChhhChhhcCCcchHHHHHHHHHHHHHHhhCcccEEeccHHHHHhhChHHHHHHHHHHH
Confidence            3466677888999999999951            1    122347789999999999999999999998766   55555


Q ss_pred             HHhcCCCeeeecCCCCcchhHHHH
Q psy4093         391 LAKQHEFLRSRNGWFSPILSSFSL  414 (434)
Q Consensus       391 la~k~gf~iFlDlKf~DIpnTV~~  414 (434)
                      .++ .|.+|.+|.|.-|| ||.+.
T Consensus        84 ~~~-~~~~vI~DaKrgDI-~T~~~  105 (477)
T PRK05500         84 AIP-PDIPIILDAKHGDL-NTSTI  105 (477)
T ss_pred             Hhc-cCCeEEEEecccCh-HHHHH
Confidence            554 57899999999999 57653

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=97.04  E-value=0.003  Score=59.08  Aligned_cols=43  Identities=26%  Similarity=0.355  Sum_probs=36.9

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYK  296 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~  296 (434)
                      +.+..||+++           +..+++ +.|+|.+||||+|++++||.+++++++
T Consensus       169 i~v~GGI~~e-----------nv~~~~-~~gad~iivgsai~~~~~~~~~~~~~~  211 (211)
T cd00429         169 IEVDGGINLE-----------TIPLLA-EAGADVLVAGSALFGSDDYAEAIKELR  211 (211)
T ss_pred             EEEECCCCHH-----------HHHHHH-HcCCCEEEECHHHhCCCCHHHHHHHhC
Confidence            4567888875           467888 899999999999999999999988763

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=96.56  E-value=0.0048  Score=65.00  Aligned_cols=77  Identities=8%  Similarity=0.079  Sum_probs=60.2

Q ss_pred             CCcEEEEecCCCHHHHHHHHHH-hCCceeEEeEceeeeecCCHHHHHHHHHHHhcC-CCeeeecCCCCcchh-HHHHHhh
Q psy4093         341 KSNLCVALDVTQAKDLLTLTRQ-LGPHIAVLKTHSDAVRDFSEEVQKELTALAKQH-EFLRSRNGWFSPILS-SFSLRFR  417 (434)
Q Consensus       341 ~s~LivAlD~~~~~~al~la~~-lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~-gf~iFlDlKf~DIpn-TV~~a~~  417 (434)
                      ..+|+||+|+.+.++++++++. +...+-++++|......++.+.+++|.+   ++ +..|+.|.|++|+|+ -|..+..
T Consensus         3 ~~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~---~~~~~~ii~D~kl~d~g~~~v~~a~~   79 (430)
T PRK07028          3 RPILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRK---NFPDHTIVADMKTMDTGAIEVEMAAK   79 (430)
T ss_pred             CceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHH---HCCCCEEEEEeeeccchHHHHHHHHH
Confidence            6789999999999999999999 6677889988866655666767766653   33 468999999999998 4555555


Q ss_pred             cCc
Q psy4093         418 DDK  420 (434)
Q Consensus       418 ~~~  420 (434)
                      .|-
T Consensus        80 aGA   82 (430)
T PRK07028         80 AGA   82 (430)
T ss_pred             cCC
Confidence            553

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=96.13  E-value=0.0041  Score=58.32  Aligned_cols=42  Identities=26%  Similarity=0.374  Sum_probs=36.1

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRY  295 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i  295 (434)
                      +.+..||+++           +.++++ +.|+|.+||||+|++++||.++++++
T Consensus       168 i~v~GGI~~e-----------nv~~l~-~~gad~iivgsai~~~~d~~~~~~~~  209 (210)
T TIGR01163       168 IEVDGGVNDD-----------NARELA-EAGADILVAGSAIFGADDYKEVIRSL  209 (210)
T ss_pred             EEEECCcCHH-----------HHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHh
Confidence            4567888875           567888 89999999999999999999998876

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=96.08  E-value=0.013  Score=56.41  Aligned_cols=76  Identities=11%  Similarity=0.110  Sum_probs=67.1

Q ss_pred             CcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHH-HhhcC
Q psy4093         342 SNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSL-RFRDD  419 (434)
Q Consensus       342 s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~-a~~~~  419 (434)
                      ..|=||||+++.++|..+++++..++-++=+|--|+.++|.+.|+.|+++.  -+..|.-|+|-.|-+++..+ ++.+|
T Consensus         4 p~LQvALD~~~l~~Ai~~a~~v~~~~diiEvGTpLik~eG~~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma~~aG   80 (217)
T COG0269           4 PLLQVALDLLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGMRAVRALRELF--PDKIIVADLKTADAGAIEARMAFEAG   80 (217)
T ss_pred             cceEeeecccCHHHHHHHHHHhhhcceEEEeCcHHHHHhhHHHHHHHHHHC--CCCeEEeeeeecchhHHHHHHHHHcC
Confidence            457899999999999999999999999999999999999999999998743  47899999999999998654 44444

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=95.94  E-value=0.0076  Score=57.06  Aligned_cols=43  Identities=28%  Similarity=0.381  Sum_probs=36.5

Q ss_pred             EecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         243 QLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       243 ~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      .+.-||++.           +..+++ +.|+|.+|||+.|++++||.++++++++
T Consensus       174 ~v~GGI~~~-----------nv~~l~-~~GaD~vvvgSai~~~~d~~~~~~~~~~  216 (220)
T PRK05581        174 EVDGGINAD-----------NIKECA-EAGADVFVAGSAVFGAPDYKEAIDSLRA  216 (220)
T ss_pred             EEECCCCHH-----------HHHHHH-HcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence            355778764           557777 8999999999999999999999999986

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=95.71  E-value=0.011  Score=57.33  Aligned_cols=44  Identities=25%  Similarity=0.390  Sum_probs=38.6

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +-|-.||..+           |..+.. ++|||.+|+|++|.+++||.++++++++
T Consensus       174 IeVDGGI~~e-----------ti~~l~-~aGaDi~V~GSaiF~~~d~~~~~~~lr~  217 (223)
T PRK08745        174 LEIDGGVKAD-----------NIGAIA-AAGADTFVAGSAIFNAPDYAQVIAQMRA  217 (223)
T ss_pred             EEEECCCCHH-----------HHHHHH-HcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence            4667788865           667888 9999999999999999999999999987

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=95.50  E-value=0.096  Score=51.83  Aligned_cols=30  Identities=33%  Similarity=0.428  Sum_probs=26.6

Q ss_pred             HHHHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093         266 DVITLRGADLGVVGRGITQAPDPVEAARRYK  296 (434)
Q Consensus       266 ~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~  296 (434)
                      .+. +.|+|.++||++|++++||.+++++++
T Consensus       228 ~~~-~~Gad~vlVGsaI~~~~dp~~~~~~l~  257 (260)
T PRK00278        228 RLA-KAGADAVLVGESLMRADDPGAALRELL  257 (260)
T ss_pred             HHH-HcCCCEEEECHHHcCCCCHHHHHHHHh
Confidence            445 789999999999999999999988765

>PRK08227 autoinducer 2 aldolase; Validated

Probab=95.40  E-value=0.08  Score=52.73  Aligned_cols=35  Identities=26%  Similarity=0.217  Sum_probs=31.8

Q ss_pred             CCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         262 NGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       262 ~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      ....+|+ ++||.-+++||-|.|++||.+.+++++.
T Consensus       210 ~~v~~ai-~aGa~Gv~~GRNIfQ~~~p~~~~~al~~  244 (264)
T PRK08227        210 EMCYQAI-DEGASGVDMGRNIFQSEHPVAMIKAVHA  244 (264)
T ss_pred             HHHHHHH-HcCCceeeechhhhccCCHHHHHHHHHH
Confidence            4667899 8999999999999999999999998874

>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily

Probab=95.15  E-value=0.0066  Score=54.77  Aligned_cols=91  Identities=19%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             CccccCCCCCCcccccCCCCCccccCCC----CCcccccccccCC--C-CeecEEE---cCC--------c---------
Q psy4093           2 LSLWKNRPSLNFWEESGQFEGDIMLEGP----ERTGVISSIDRWP--G-GLIPYYI---DDD--------H---------   54 (434)
Q Consensus         2 ~~~~~~~~~~~~~e~~g~~EGDi~l~~~----~rng~~~~~~rWP--n-~~VpY~I---~~~--------~---------   54 (434)
                      +..|.+.++++|.|....-..||.+...    .-+|++.-..+++  . +.|-..-   ...        .         
T Consensus        24 ~~~W~~~~~i~F~e~~~~~~~di~i~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiG  103 (165)
T cd04268          24 IEAWNKAFAIGFKNANDVDPADIRYSVIRWIPYNDGTWSYGPSQVDPLTGEILLARVYLYSSFVEYSGARLRNTAEHELG  103 (165)
T ss_pred             HHHHHHHhCcCceeccccCccCceEEEEEeecCCCCccccCCccCCCCCccEEeeEEEEchhHHHHHHHHHHHHHHHHHH
Confidence            3579999999999987655688876522    1356665555552  1 2222211   110        0         


Q ss_pred             --ccccccccccCCC-CcccCccccccceecccchhhhccC
Q psy4093          55 --FCTERNFKKYPPS-EITDFGVGYDFDSVMHYSRKAFSKN   92 (434)
Q Consensus        55 --~c~~~NF~k~~~~-~~~~~g~pYDy~SVMhYg~~aFs~~   92 (434)
                        .+..|++.-.... .+..++.+||+.|||||....|+.+
T Consensus       104 HaLGL~H~~~~~~~~~~~~~~~~~~~~~SvM~y~~~~~~~~  144 (165)
T cd04268         104 HALGLRHNFAASDRDDNVDLLAEKGDTSSVMDYAPSNFSIQ  144 (165)
T ss_pred             HHhcccccCcCCccCCcchhhccCCCCcccCCCCccccccc
Confidence              1244555432221 1367899999999999999999877

This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.

>KOG3111|consensus

Probab=94.90  E-value=0.046  Score=51.93  Aligned_cols=40  Identities=20%  Similarity=0.230  Sum_probs=34.6

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY  303 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~  303 (434)
                      |...+. ++||++||+|-+|..|.||.++.+.||++-..|.
T Consensus       182 ti~~~a-~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~  221 (224)
T KOG3111|consen  182 TIDKAA-EAGANMIVAGSAVFGAADPSDVISLLRNSVEKAA  221 (224)
T ss_pred             hHHHHH-HcCCCEEEecceeecCCCHHHHHHHHHHHHhhhh
Confidence            666777 8999999999999999999999999998655443

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=94.57  E-value=0.041  Score=53.25  Aligned_cols=43  Identities=21%  Similarity=0.374  Sum_probs=37.4

Q ss_pred             EecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         243 QLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       243 ~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      .+--||.+.           |..+.+ ++|||.+|+|++|.+++||.++++++++
T Consensus       171 ~vdGGI~~e-----------ni~~l~-~aGAd~vVvGSaIf~~~d~~~~i~~l~~  213 (220)
T PRK08883        171 EIDGGVKVD-----------NIREIA-EAGADMFVAGSAIFGQPDYKAVIDEMRA  213 (220)
T ss_pred             EEECCCCHH-----------HHHHHH-HcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence            366788864           567888 9999999999999999999999999986

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=94.47  E-value=0.037  Score=51.87  Aligned_cols=38  Identities=37%  Similarity=0.379  Sum_probs=33.3

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                      +..+++ +.|||.+++|+.|++++||.++++++++ .|++
T Consensus       173 ~i~~~~-~~Ga~gv~~gs~i~~~~d~~~~~~~l~~-~~~~  210 (212)
T PRK00043        173 NAPEVL-EAGADGVAVVSAITGAEDPEAAARALLA-AFRA  210 (212)
T ss_pred             HHHHHH-HcCCCEEEEeHHhhcCCCHHHHHHHHHH-HHhh
Confidence            557888 8999999999999999999999999986 5654

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=93.93  E-value=1.4  Score=43.48  Aligned_cols=38  Identities=34%  Similarity=0.497  Sum_probs=32.7

Q ss_pred             CCHHHH---HHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHH
Q psy4093         262 NGPTDV---ITLRGADLGVVGRGITQAPDPVEAARRYKEVMW  300 (434)
Q Consensus       262 ~TP~~A---i~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~  300 (434)
                      .||++|   + +.|||-++||-+|+.|.||...+++++....
T Consensus       185 ~tpeda~~Am-elGAdgVlV~SAIt~a~dP~~ma~af~~Av~  225 (248)
T cd04728         185 GTPSDAAQAM-ELGADAVLLNTAIAKAKDPVAMARAFKLAVE  225 (248)
T ss_pred             CCHHHHHHHH-HcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence            466655   6 7999999999999999999999999998443

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=93.84  E-value=0.82  Score=43.93  Aligned_cols=33  Identities=39%  Similarity=0.458  Sum_probs=30.0

Q ss_pred             HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      ..+++ +.||+-+.+||.|.+++||.++++++++
T Consensus       200 ~~~~~-~~Ga~gv~vg~~i~~~~dp~~~~~~~~~  232 (235)
T cd00958         200 VYDAM-EAGAAGVAVGRNIFQRPDPVAMLRAISA  232 (235)
T ss_pred             HHHHH-HcCCcEEEechhhhcCCCHHHHHHHHHH
Confidence            46678 8999999999999999999999998876

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK07695 transcriptional regulator TenI; Provisional

Probab=93.16  E-value=0.092  Score=49.48  Aligned_cols=37  Identities=30%  Similarity=0.405  Sum_probs=32.6

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                      +..+++ +.|+|.+.|||.|+.++||.++++++++ .++
T Consensus       162 ~~~~~~-~~Ga~gvav~s~i~~~~~p~~~~~~~~~-~~~  198 (201)
T PRK07695        162 NTRDVL-AAGVSGIAVMSGIFSSANPYSKAKRYAE-SIK  198 (201)
T ss_pred             HHHHHH-HcCCCEEEEEHHHhcCCCHHHHHHHHHH-HHh
Confidence            457888 8999999999999999999999999986 444

>PRK00208 thiG thiazole synthase; Reviewed

Probab=93.12  E-value=2.3  Score=42.03  Aligned_cols=38  Identities=34%  Similarity=0.462  Sum_probs=32.6

Q ss_pred             CCHHHH---HHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHH
Q psy4093         262 NGPTDV---ITLRGADLGVVGRGITQAPDPVEAARRYKEVMW  300 (434)
Q Consensus       262 ~TP~~A---i~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~  300 (434)
                      .||++|   + +.|||-++||-+|+.|.||...+++++....
T Consensus       185 ~tpeda~~Am-elGAdgVlV~SAItka~dP~~ma~af~~Av~  225 (250)
T PRK00208        185 GTPSDAAQAM-ELGADAVLLNTAIAVAGDPVAMARAFKLAVE  225 (250)
T ss_pred             CCHHHHHHHH-HcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence            466655   6 7999999999999999999999999998443

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=93.00  E-value=0.13  Score=51.74  Aligned_cols=38  Identities=34%  Similarity=0.407  Sum_probs=32.6

Q ss_pred             HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHH
Q psy4093         265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYE  304 (434)
Q Consensus       265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~  304 (434)
                      ..++ +.|||-++||+.|+.+.||.+.++++++ .++.|.
T Consensus       221 a~vm-e~GAdgVaVGSaI~ks~dP~~~akafv~-ai~~~~  258 (293)
T PRK04180        221 ALMM-QLGADGVFVGSGIFKSGDPEKRARAIVE-ATTHYD  258 (293)
T ss_pred             HHHH-HhCCCEEEEcHHhhcCCCHHHHHHHHHH-HHHHcC
Confidence            4557 8999999999999999999999999987 555553

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=92.24  E-value=0.18  Score=50.71  Aligned_cols=37  Identities=30%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093         265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY  303 (434)
Q Consensus       265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~  303 (434)
                      ..++ +.|||-++||+.|+++.||.+.++++++ .++.|
T Consensus       215 a~~m-elGAdGVaVGSaI~ks~dP~~~akafv~-ai~~~  251 (287)
T TIGR00343       215 ALMM-QLGADGVFVGSGIFKSSNPEKLAKAIVE-ATTHY  251 (287)
T ss_pred             HHHH-HcCCCEEEEhHHhhcCCCHHHHHHHHHH-HHHHc
Confidence            4457 8999999999999999999999999987 55443

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=91.82  E-value=0.14  Score=46.68  Aligned_cols=43  Identities=35%  Similarity=0.365  Sum_probs=35.1

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYK  296 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~  296 (434)
                      +++..||.+.           +..+++ +.|+|.+++|+.|..++||.+++++++
T Consensus       153 v~a~GGi~~~-----------~i~~~~-~~Ga~~i~~g~~i~~~~~~~~~~~~l~  195 (196)
T cd00564         153 VVAIGGITPE-----------NAAEVL-AAGADGVAVISAITGADDPAAAARELL  195 (196)
T ss_pred             EEEECCCCHH-----------HHHHHH-HcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence            3555666643           557888 899999999999999999999988775

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PRK06852 aldolase; Validated

Probab=90.69  E-value=1.3  Score=45.20  Aligned_cols=35  Identities=26%  Similarity=0.244  Sum_probs=29.4

Q ss_pred             CCHHHHHHH-cCCCEEEeCCcccCCCCH--HHHHHHHHH
Q psy4093         262 NGPTDVITL-RGADLGVVGRGITQAPDP--VEAARRYKE  297 (434)
Q Consensus       262 ~TP~~Ai~~-~GAD~IVVGR~It~A~DP--~~aa~~i~~  297 (434)
                      ....+|+ + +||.-+++||-|.|++||  .+.+++|..
T Consensus       248 ~~v~~ai-~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~  285 (304)
T PRK06852        248 KQLYEQI-HISGASGNATGRNIHQKPLDEAVRMCNAIYA  285 (304)
T ss_pred             HHHHHHH-HHcCCceeeechhhhcCCCchHHHHHHHHHH
Confidence            4567788 7 999999999999999999  777777764

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=90.50  E-value=0.19  Score=46.72  Aligned_cols=31  Identities=39%  Similarity=0.467  Sum_probs=27.6

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARR  294 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~  294 (434)
                      +..+++ +.|+|.++|||.|++++||.+++++
T Consensus       165 ~~~~~~-~~G~~gva~~~~i~~~~dp~~~~~~  195 (196)
T TIGR00693       165 NAAEVL-AAGADGVAVVSAIMQAADPKAAAKQ  195 (196)
T ss_pred             HHHHHH-HcCCCEEEEhHHhhCCCCHHHHHHh
Confidence            456778 8999999999999999999998875

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=90.17  E-value=0.41  Score=46.92  Aligned_cols=37  Identities=32%  Similarity=0.423  Sum_probs=32.9

Q ss_pred             cCCHHHHH--HHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         261 YNGPTDVI--TLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       261 ~~TP~~Ai--~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      ++||.+|-  -+.|||-+-||-+|.+|+||.+-|+.|.+
T Consensus       217 vATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~  255 (296)
T COG0214         217 VATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVE  255 (296)
T ss_pred             cCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHH
Confidence            46888882  27899999999999999999999999987

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=89.04  E-value=0.51  Score=46.08  Aligned_cols=44  Identities=11%  Similarity=0.160  Sum_probs=36.4

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +-|-.||+..           |..+.. ++|||.+|+|++|.+++||.+..++++.
T Consensus       182 IeVDGGI~~~-----------ti~~l~-~aGaD~~V~GSalF~~~d~~~~i~~l~~  225 (228)
T PRK08091        182 ISIDGSMTLE-----------LASYLK-QHQIDWVVSGSALFSQGELKTTLKEWKS  225 (228)
T ss_pred             EEEECCCCHH-----------HHHHHH-HCCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence            3455778764           667888 9999999999999999999988887775

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=88.87  E-value=0.98  Score=45.01  Aligned_cols=34  Identities=32%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      --.+|+ ++||--+++||-|.|+++|.+.++.|..
T Consensus       222 ~~~~ai-~aGa~G~~~GRNifQ~~~p~~m~~Ai~~  255 (265)
T COG1830         222 MVTAAI-EAGAMGVAVGRNIFQHEDPEAMVKAIQA  255 (265)
T ss_pred             HHHHHH-HccCcchhhhhhhhccCChHHHHHHHHH
Confidence            446788 8999999999999999999998777765

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=88.67  E-value=2.5  Score=48.05  Aligned_cols=134  Identities=12%  Similarity=0.082  Sum_probs=79.7

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcc---cccccChhhhhhhc-------cch----
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKEN---SRIVTPFETRKADV-------KCR----  328 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~---~~~~~~~~~r~~~~-------~~~----  328 (434)
                      +..+++ +.||+.|-|.+.|.+++||.++++++++ .|+.+.++-++-+   ......|..|....       +-|    
T Consensus       179 ~~~~~~-~~Ga~giAvisai~~a~d~~~a~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLtIaGsD~sggA  256 (755)
T PRK09517        179 NAAELA-ATGIDGLCVVSAIMAAANPAAAARELRT-AFQPTRSPETQTELSQTELQGAFVNSPSAPRVLSIAGTDPTGGA  256 (755)
T ss_pred             HHHHHH-HcCCCEEEEehHhhCCCCHHHHHHHHHH-HHHHhhccccccccccccccccccccCCCCeEEEEeccCCCcHH
Confidence            346677 8999999999999999999999999998 7998887765221   22344555554321       000    


Q ss_pred             -hhHHHHHHhhhc-------------C-CcEEEEecCCCHHHHHHHHHHhCC--ceeEEeEceeeeecCCHHHHHHHHHH
Q psy4093         329 -ISSTLLDIMVKK-------------K-SNLCVALDVTQAKDLLTLTRQLGP--HIAVLKTHSDAVRDFSEEVQKELTAL  391 (434)
Q Consensus       329 -~~~~l~~~m~~k-------------~-s~LivAlD~~~~~~al~la~~lgp--~i~~lKvg~dl~~~~g~~~v~~L~~l  391 (434)
                       +..-| +++..-             | +.=+..+-..+.+-+.+-.+.+-.  .+-.+|||+ |   .+.+.++.+.+.
T Consensus       257 Gi~aDl-kt~~alg~~~~~viTaltaQn~~~v~~v~~~~~~~v~~Ql~~~~~d~~~~aiKiGm-L---~s~e~v~~i~~~  331 (755)
T PRK09517        257 GIQADL-KSIAAGGGYGMCVVTALVAQNTHGVNTIHTPPLTFLEEQLEAVFSDVTVDAVKLGM-L---GSADTVDLVASW  331 (755)
T ss_pred             HHHHHH-HHHHHcCCcccchheeEeeEcccceeEEeeCCHHHHHHHHHHHHcCCCCCEEEECC-C---CCHHHHHHHHHH
Confidence             11111 111110             1 111223333344444444444433  567899997 3   346777777776


Q ss_pred             HhcC-CCeeeecC
Q psy4093         392 AKQH-EFLRSRNG  403 (434)
Q Consensus       392 a~k~-gf~iFlDl  403 (434)
                      .+++ +.+|.+|=
T Consensus       332 l~~~~~~~vVlDP  344 (755)
T PRK09517        332 LGSHEHGPVVLDP  344 (755)
T ss_pred             HHhCCCCCEEEec
Confidence            7664 45688884

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=88.19  E-value=0.79  Score=44.78  Aligned_cols=44  Identities=18%  Similarity=0.187  Sum_probs=36.0

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCc-ccC-CCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRG-ITQ-APDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~-It~-A~DP~~aa~~i~~  297 (434)
                      +-|-.||+..           |..++. ++|||.+|+|++ |.+ ++||.+..+.+++
T Consensus       172 IeVDGGI~~~-----------~i~~~~-~aGad~~V~Gss~iF~~~~d~~~~i~~l~~  217 (229)
T PRK09722        172 IEVDGSCNQK-----------TYEKLM-EAGADVFIVGTSGLFNLDEDIDEAWDIMTA  217 (229)
T ss_pred             EEEECCCCHH-----------HHHHHH-HcCCCEEEEChHHHcCCCCCHHHHHHHHHH
Confidence            3556778864           667888 999999999987 987 5789999999886

>PRK08005 epimerase; Validated

Probab=87.45  E-value=0.62  Score=44.91  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=33.8

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRY  295 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i  295 (434)
                      +-|-.||+..           |..+.+ ++|||.+|+|++|.+++||.+..+++
T Consensus       166 I~VDGGI~~~-----------~i~~l~-~aGad~~V~GsaiF~~~d~~~~~~~~  207 (210)
T PRK08005        166 CWADGGITLR-----------AARLLA-AAGAQHLVIGRALFTTANYDVTLSQF  207 (210)
T ss_pred             EEEECCCCHH-----------HHHHHH-HCCCCEEEEChHhhCCCCHHHHHHHH
Confidence            4566777754           667888 99999999999999998988776654

>PRK14057 epimerase; Provisional

Probab=86.71  E-value=0.91  Score=45.07  Aligned_cols=44  Identities=18%  Similarity=0.311  Sum_probs=35.9

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +-|-.||+.+           |..+.. ++|||.+|+|++|..++|+.+..+++++
T Consensus       196 IeVDGGI~~~-----------ti~~l~-~aGad~~V~GSalF~~~d~~~~i~~l~~  239 (254)
T PRK14057        196 IVIDGSLTQD-----------QLPSLI-AQGIDRVVSGSALFRDDRLVENTRSWRA  239 (254)
T ss_pred             EEEECCCCHH-----------HHHHHH-HCCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence            3455677764           677888 9999999999999999899888777764

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=86.25  E-value=6.4  Score=38.98  Aligned_cols=48  Identities=13%  Similarity=0.083  Sum_probs=30.7

Q ss_pred             EEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHH-HHHHHHHhcCCCeeee
Q psy4093         344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQ-KELTALAKQHEFLRSR  401 (434)
Q Consensus       344 LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v-~~L~~la~k~gf~iFl  401 (434)
                      +.+++|..+++.+.+-.+.          |.+++.+-+..-. .++.++++++|..+.+
T Consensus        77 ~plSIDT~~~~v~e~al~~----------G~~iINdisg~~~~~~~~~l~~~~~~~vV~  125 (257)
T cd00739          77 VLISVDTFRAEVARAALEA----------GADIINDVSGGSDDPAMLEVAAEYGAPLVL  125 (257)
T ss_pred             CcEEEeCCCHHHHHHHHHh----------CCCEEEeCCCCCCChHHHHHHHHcCCCEEE
Confidence            5678999999888876653          4666665321111 3445556778877766

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=85.89  E-value=0.87  Score=43.96  Aligned_cols=34  Identities=35%  Similarity=0.423  Sum_probs=31.5

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +..+++ +.|+|.|-|-|.|+.++||.++++++++
T Consensus       171 nv~~v~-~~Ga~gVAvvsai~~a~d~~~a~~~~~~  204 (211)
T COG0352         171 NVPEVL-EAGADGVAVVSAITSAADPAAAAKALRN  204 (211)
T ss_pred             HHHHHH-HhCCCeEEehhHhhcCCCHHHHHHHHHH
Confidence            457788 9999999999999999999999999987

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=85.03  E-value=1.1  Score=45.18  Aligned_cols=36  Identities=31%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                      .+++ +.|||-++||+.|+.++||.+.++++++ .++.
T Consensus       212 ~~v~-e~GAdgVaVGSAI~~a~dP~~~tk~f~~-ai~~  247 (283)
T cd04727         212 ALMM-QLGADGVFVGSGIFKSENPEKRARAIVE-AVTH  247 (283)
T ss_pred             HHHH-HcCCCEEEEcHHhhcCCCHHHHHHHHHH-HHHh
Confidence            5667 8999999999999999999999999987 4443

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK04302 triosephosphate isomerase; Provisional

Probab=84.06  E-value=3.3  Score=39.80  Aligned_cols=36  Identities=31%  Similarity=0.345  Sum_probs=28.6

Q ss_pred             CCHHHHHH--HcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         262 NGPTDVIT--LRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       262 ~TP~~Ai~--~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      .+|+++..  +.|+|-++||+.|++++||.+..+++.+
T Consensus       183 ~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~  220 (223)
T PRK04302        183 STGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVS  220 (223)
T ss_pred             CCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHh
Confidence            35655431  6899999999999999999998877654

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=83.61  E-value=1.6  Score=43.25  Aligned_cols=50  Identities=22%  Similarity=0.288  Sum_probs=37.9

Q ss_pred             eEecCcccccCCCCCCCCc-cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQ-YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ-~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +...-||+..    + -+| .....+++ ++||+-+.+||.|.+++||.+++++++.
T Consensus       199 V~a~GGi~~~----~-~~~~l~~v~~~~-~aGA~Gis~gr~i~~~~~p~~~~~~l~~  249 (267)
T PRK07226        199 VVIAGGPKTD----T-DREFLEMVRDAM-EAGAAGVAVGRNVFQHEDPEAITRAISA  249 (267)
T ss_pred             EEEEeCCCCC----C-HHHHHHHHHHHH-HcCCcEEehhhhhhcCCCHHHHHHHHHH
Confidence            4556677743    0 112 23467888 9999999999999999999999988876

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=83.31  E-value=9.7  Score=37.66  Aligned_cols=21  Identities=33%  Similarity=0.360  Sum_probs=16.9

Q ss_pred             CHHHHHHHcCCCEEEeCCcccC
Q psy4093         263 GPTDVITLRGADLGVVGRGITQ  284 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~  284 (434)
                      +..+++ +.|||.+|||..|.+
T Consensus       212 ~~~~~~-~~GADgvVvGSaiv~  232 (256)
T TIGR00262       212 QVKQAI-DAGADGVIVGSAIVK  232 (256)
T ss_pred             HHHHHH-HcCCCEEEECHHHHH
Confidence            335556 789999999999976

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=82.64  E-value=1.2  Score=43.66  Aligned_cols=35  Identities=31%  Similarity=0.305  Sum_probs=31.7

Q ss_pred             CCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         262 NGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       262 ~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      ....+++ ++||+-+.+||.|++++||.+++++++.
T Consensus       211 ~~i~~~~-~aGa~Gia~g~~i~~~~dp~~~~~~l~~  245 (258)
T TIGR01949       211 QMIKDAM-EAGAAGVAVGRNIFQHDDPVGITKAVCK  245 (258)
T ss_pred             HHHHHHH-HcCCcEEehhhHhhcCCCHHHHHHHHHH
Confidence            3567888 8999999999999999999999998886

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>KOG1606|consensus

Probab=80.99  E-value=2.5  Score=40.99  Aligned_cols=37  Identities=35%  Similarity=0.459  Sum_probs=32.8

Q ss_pred             cCCHHHHH--HHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         261 YNGPTDVI--TLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       261 ~~TP~~Ai--~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +.||.+|.  -+.|+|-+-||-+|..+.||...++.|.+
T Consensus       218 vaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVq  256 (296)
T KOG1606|consen  218 VATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQ  256 (296)
T ss_pred             cCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHH
Confidence            57898882  27899999999999999999999999987

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=80.40  E-value=1.2  Score=42.25  Aligned_cols=30  Identities=33%  Similarity=0.513  Sum_probs=26.2

Q ss_pred             HHHHHHHcCCCEEEeCCcccCCCCHHHHHHH
Q psy4093         264 PTDVITLRGADLGVVGRGITQAPDPVEAARR  294 (434)
Q Consensus       264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~  294 (434)
                      ..+++ +.|||.++||+.|+++.||.+++++
T Consensus       187 i~~~~-~~Ga~gvivGsai~~~~~p~~~~~~  216 (217)
T cd00331         187 VKRLA-EAGADAVLIGESLMRAPDPGAALRE  216 (217)
T ss_pred             HHHHH-HcCCCEEEECHHHcCCCCHHHHHHh
Confidence            34557 8999999999999999999998874

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	434
2p1f_A	291	Human Ump Synthase (c-terminal Domain-orotidine 5'-		1e-24
2p1f_A	291	Human Ump Synthase (c-terminal Domain-orotidine 5'-		7e-15
2eaw_A	291	Human Ump Synthase (C-Terminal Domain- Orotidine 5'		1e-24
2eaw_A	291	Human Ump Synthase (C-Terminal Domain- Orotidine 5'		1e-14
2jgy_A	279	The Crystal Structure Of Human Orotidine-5'-Decarbo		1e-24
2jgy_A	279	The Crystal Structure Of Human Orotidine-5'-Decarbo		1e-14
2qcm_A	260	Crystal Structure Of The Orotidine-5'-Monophosphate		2e-24
2qcm_A	260	Crystal Structure Of The Orotidine-5'-Monophosphate		2e-15
2qcd_A	260	Crystal Structure Of The Orotidine-5'-Monophosphate		2e-24
2qcd_A	260	Crystal Structure Of The Orotidine-5'-Monophosphate		7e-15
2qcl_A	260	Crystal Structure Of The Orotidine-5'-Monophosphate		2e-24
2qcl_A	260	Crystal Structure Of The Orotidine-5'-Monophosphate		3e-15
2qcc_A	260	Crystal Structure Of The Orotidine-5'-monophosphate		2e-24
2qcc_A	260	Crystal Structure Of The Orotidine-5'-monophosphate		1e-14
3bvj_A	312	Crystal Structure Of Human Orotidine 5'-monophospha		2e-24
3bvj_A	312	Crystal Structure Of Human Orotidine 5'-monophospha		1e-14
3g3m_A	279	Crystal Structure Of Human Orotidine 5'-Monophospha		2e-24
3g3m_A	279	Crystal Structure Of Human Orotidine 5'-Monophospha		8e-15
3bk0_A	279	Crystal Structure Of Human Orotidine 5'-Monophospha		2e-24
3bk0_A	279	Crystal Structure Of Human Orotidine 5'-Monophospha		1e-14
3ewx_A	260	K314a Mutant Of Human Orotidyl-5'-Monophosphate Dec		7e-24
3ewx_A	260	K314a Mutant Of Human Orotidyl-5'-Monophosphate Dec		5e-15
3gdk_A	267	Crystal Structure Of The Orotidine 5'-Monophosphate		3e-18
3gdk_A	267	Crystal Structure Of The Orotidine 5'-Monophosphate		5e-12
3gdr_A	267	Crystal Structure Of The D91n Mutant Of The Orotidi		3e-18
3gdr_A	267	Crystal Structure Of The D91n Mutant Of The Orotidi		1e-12
3gdm_A	267	Crystal Structure Of The K93r Mutant Of The Orotidi		5e-18
3gdm_A	267	Crystal Structure Of The K93r Mutant Of The Orotidi		5e-12
1dqw_A	267	Crystal Structure Of Orotidine 5'-Phosphate Decarbo		1e-17
1dqw_A	267	Crystal Structure Of Orotidine 5'-Phosphate Decarbo		5e-12
3edg_A	202	Crystal Structure Of Bone Morphogenetic Protein 1 P		2e-05
3edh_A	201	Crystal Structure Of Bone Morphogenetic Protein 1 P		2e-05
3edi_A	201	Crystal Structure Of Tolloid-Like Protease 1 (Tll-1		4e-05
1dbt_A	239	Crystal Structure Of Orotidine 5'-Monophosphate Dec		4e-04

>pdb|2P1F|A Chain A, Human Ump Synthase (c-terminal Domain-orotidine 5'-monophosphate Decarboxylase) Length = 291

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 125 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 182
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 183 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 212
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 213 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 272
Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 273 AAEMYRKAAWEAYLSRL 289

>pdb|2P1F|A Chain A, Human Ump Synthase (c-terminal Domain-orotidine 5'-monophosphate Decarboxylase) Length = 291

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH D + DF+ +V KEL
Sbjct: 50  VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 109
Query: 389 TALAKQHEFLRSRNGWFSPI 408
             LAK HEFL   +  F+ I
Sbjct: 110 ITLAKXHEFLIFEDRKFADI 129

>pdb|2EAW|A Chain A, Human Ump Synthase (C-Terminal Domain- Orotidine 5'- Monophosphate Decarboxylase) Length = 291

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 125 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 182
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 183 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 212
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 213 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 272
Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 273 AAEMYRKAAWEAYLSRL 289

>pdb|2EAW|A Chain A, Human Ump Synthase (C-Terminal Domain- Orotidine 5'- Monophosphate Decarboxylase) Length = 291

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH D + DF+ +V KEL
Sbjct: 50  VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 109
Query: 389 TALAKQHEFLRSRNGWFSPI 408
             LAK HEFL   +  F+ I
Sbjct: 110 ITLAKCHEFLIFEDRKFADI 129

>pdb|2JGY|A Chain A, The Crystal Structure Of Human Orotidine-5'-Decarboxylase Domain Of Human Uridine Monophosphate Synthetase (Umps) Length = 279

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 114 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 171
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 172 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 201
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 202 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 261
Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 262 AAEMYRKAAWEAYLSRL 278

>pdb|2JGY|A Chain A, The Crystal Structure Of Human Orotidine-5'-Decarboxylase Domain Of Human Uridine Monophosphate Synthetase (Umps) Length = 279

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH D + DF+ +V KEL
Sbjct: 39  VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 98
Query: 389 TALAKQHEFLRSRNGWFSPI 408
             LAK HEFL   +  F+ I
Sbjct: 99  ITLAKCHEFLIFEDRKFADI 118

>pdb|2QCM|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate Decarboxylase Domain (Asp312asn Mutant) Of Human Ump Synthase Bound To 6-Hydroxymethyl-Ump Length = 260

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 94  KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 151
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 152 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 181
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 182 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 241
Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 242 AAEMYRKAAWEAYLSRL 258

>pdb|2QCM|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate Decarboxylase Domain (Asp312asn Mutant) Of Human Ump Synthase Bound To 6-Hydroxymethyl-Ump Length = 260

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH D + DF+ +V KEL
Sbjct: 19  VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 78
Query: 389 TALAKQHEFLRSRNGWFSPI 408
             LAK HEFL   N  F+ I
Sbjct: 79  ITLAKXHEFLIFENRKFADI 98

>pdb|2QCD|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate Decarboxylase Domain Of Human Ump Synthase Bound To Ump Length = 260

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 94  KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 151
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 152 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 181
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 182 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 241
Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 242 AAEMYRKAAWEAYLSRL 258

>pdb|2QCD|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate Decarboxylase Domain Of Human Ump Synthase Bound To Ump Length = 260

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH D + DF+ +V KEL
Sbjct: 19  VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 78
Query: 389 TALAKQHEFLRSRNGWFSPI 408
             LAK HEFL   +  F+ I
Sbjct: 79  ITLAKXHEFLIFEDRKFADI 98

>pdb|2QCL|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate Decarboxylase Domain (Asp312asn Mutant) Of Human Ump Synthase Bound To Omp Length = 260

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 94  KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 151
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 152 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 181
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 182 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 241
Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 242 AAEMYRKAAWEAYLSRL 258

>pdb|2QCL|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate Decarboxylase Domain (Asp312asn Mutant) Of Human Ump Synthase Bound To Omp Length = 260

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH D + DF+ +V KEL
Sbjct: 19  VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 78
Query: 389 TALAKQHEFLRSRNGWFSPI 408
             LAK HEFL   N  F+ I
Sbjct: 79  ITLAKCHEFLIFENRKFADI 98

>pdb|2QCC|A Chain A, Crystal Structure Of The Orotidine-5'-monophosphate Decarboxylase Domain Of Human Ump Synthase, Apo Form Length = 260

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 94  KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 151
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 152 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 181
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 182 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 241
Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 242 AAEMYRKAAWEAYLSRL 258

>pdb|2QCC|A Chain A, Crystal Structure Of The Orotidine-5'-monophosphate Decarboxylase Domain Of Human Ump Synthase, Apo Form Length = 260

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH D + DF+ +V KEL
Sbjct: 19  VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 78
Query: 389 TALAKQHEFLRSRNGWFSPI 408
             LAK HEFL   +  F+ I
Sbjct: 79  ITLAKCHEFLIFEDRKFADI 98

>pdb|3BVJ|A Chain A, Crystal Structure Of Human Orotidine 5'-monophosphate Decarboxylase Complexed With Xmp Length = 312

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 146 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 203
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 204 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 233
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 234 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 293
Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 294 AAEMYRKAAWEAYLSRL 310

>pdb|3BVJ|A Chain A, Crystal Structure Of Human Orotidine 5'-monophosphate Decarboxylase Complexed With Xmp Length = 312

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH D + DF+ +V KEL
Sbjct: 71  VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 130
Query: 389 TALAKQHEFLRSRNGWFSPI 408
             LAK HEFL   +  F+ I
Sbjct: 131 ITLAKCHEFLIFEDRKFADI 150

>pdb|3G3M|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6-Iodo-Ump Length = 279

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 113 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 170
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 171 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 200
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 201 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 260
Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 261 AAEMYRKAAWEAYLSRL 277

>pdb|3G3M|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6-Iodo-Ump Length = 279

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH D + DF+ +V KEL
Sbjct: 38  VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 97
Query: 389 TALAKQHEFLRSRNGWFSPI 408
             LAK HEFL   +  F+ I
Sbjct: 98  ITLAKXHEFLIFEDRKFADI 117

>pdb|3BK0|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate Decarboxylase Complexed With 5-Cn-Ump Length = 279

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
           K ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++
Sbjct: 113 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 170
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
           S  G+L    YT+                              +++A+     + G +  
Sbjct: 171 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 200
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
           + S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +E
Sbjct: 201 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 260
Query: 291 AARRYKEVMWEAYEQRL 307
           AA  Y++  WEAY  RL
Sbjct: 261 AAEMYRKAAWEAYLSRL 277

>pdb|3BK0|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate Decarboxylase Complexed With 5-Cn-Ump Length = 279

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH D + DF+ +V KEL
Sbjct: 38  VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 97
Query: 389 TALAKQHEFLRSRNGWFSPI 408
             LAK HEFL   +  F+ I
Sbjct: 98  ITLAKCHEFLIFEDRKFADI 117

>pdb|3EWX|A Chain A, K314a Mutant Of Human Orotidyl-5'-Monophosphate Decarboxylase In Complex With 6-Azido-Ump, Degraded To Bmp Length = 260

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 94/196 (47%), Gaps = 36/196 (18%)
Query: 116 LADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLS 171
            ADIG  V  Q+      I  WA LV  H + G G ++ +Q +   L   RG  LIA++S
Sbjct: 95  FADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEMS 152
Query: 172 CQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQA 231
             G+L    YT+                              +++A+     + G +  +
Sbjct: 153 STGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI--S 182
Query: 232 PSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEA 291
            S ++  P  L LTPG+ L   GDN GQQYN P +VI  RG+D+ +VGRGI  A D +EA
Sbjct: 183 GSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEA 242
Query: 292 ARRYKEVMWEAYEQRL 307
           A  Y++  WEAY  RL
Sbjct: 243 AEMYRKAAWEAYLSRL 258

>pdb|3EWX|A Chain A, K314a Mutant Of Human Orotidyl-5'-Monophosphate Decarboxylase In Complex With 6-Azido-Ump, Degraded To Bmp Length = 260

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH D + DF+ +V KEL
Sbjct: 19  VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 78
Query: 389 TALAKQHEFLRSRNGWFSPI 408
             LAK HEFL   +  F+ I
Sbjct: 79  ITLAKXHEFLIFEDRAFADI 98

>pdb|3GDK|A Chain A, Crystal Structure Of The Orotidine 5'-Monophosphate Decarboxylase From Saccharomyces Cerevisiae Length = 267

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 38/205 (18%)
Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRISDEL-GEDRGVFLIAQ 169
           K ADIG  V  Q+      I EWA +   H + GPG +  +++ ++E+  E RG+ ++A+
Sbjct: 93  KFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAE 152
Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
           LSC+G+L   +YT                            + T+ +A+S    + G + 
Sbjct: 153 LSCKGSLATGEYT----------------------------KGTVDIAKSDKDFVIGFIA 184
Query: 230 QAPSVLASNPGL--LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGI-TQAP 286
           Q   +   + G   L +TPG+ L+  GD  GQQY    DV++  G+D+ +VGRG+  +  
Sbjct: 185 Q-RDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGR 242
Query: 287 DPVEAARRYKEVMWEAYEQRLKKEN 311
           D      RY++  WEAY +R  ++N
Sbjct: 243 DAKVEGERYRKAGWEAYLRRCGQQN 267

>pdb|3GDK|A Chain A, Crystal Structure Of The Orotidine 5'-Monophosphate Decarboxylase From Saccharomyces Cerevisiae Length = 267

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 318 FETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAV 377
           ++ R A     +++ L +IM +K++NLC +LDV   K+LL L   LGP I +LKTH D +
Sbjct: 6   YKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDIL 65
Query: 378 RDFS-EEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF 416
            DFS E   K L AL+ ++ FL   +  F+ I ++  L++
Sbjct: 66  TDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQY 105

>pdb|3GDR|A Chain A, Crystal Structure Of The D91n Mutant Of The Orotidine 5'- Monophosphate Decarboxylase From Saccharomyces Cerevisiae Length = 267

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 38/205 (18%)
Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRISDEL-GEDRGVFLIAQ 169
           K ADIG  V  Q+      I EWA +   H + GPG +  +++ ++E+  E RG+ ++A+
Sbjct: 93  KFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAE 152
Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
           LSC+G+L   +YT                            + T+ +A+S    + G + 
Sbjct: 153 LSCKGSLATGEYT----------------------------KGTVDIAKSDKDFVIGFIA 184
Query: 230 QAPSVLASNPGL--LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGI-TQAP 286
           Q   +   + G   L +TPG+ L+  GD  GQQY    DV++  G+D+ +VGRG+  +  
Sbjct: 185 Q-RDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGR 242
Query: 287 DPVEAARRYKEVMWEAYEQRLKKEN 311
           D      RY++  WEAY +R  ++N
Sbjct: 243 DAKVEGERYRKAGWEAYLRRCGQQN 267

>pdb|3GDR|A Chain A, Crystal Structure Of The D91n Mutant Of The Orotidine 5'- Monophosphate Decarboxylase From Saccharomyces Cerevisiae Length = 267

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 318 FETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAV 377
           ++ R A     +++ L +IM +K++NLC +LDV   K+LL L   LGP I +LKTH D +
Sbjct: 6   YKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDIL 65
Query: 378 RDFS-EEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF 416
            DFS E   K L AL+ ++ FL   N  F+ I ++  L++
Sbjct: 66  TDFSMEGTVKPLKALSAKYNFLLFENRKFADIGNTVKLQY 105

>pdb|3GDM|A Chain A, Crystal Structure Of The K93r Mutant Of The Orotidine 5'- Monophosphate Decarboxylase From Saccharomyces Cerevisiae Length = 267

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 38/205 (18%)
Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRISDEL-GEDRGVFLIAQ 169
           + ADIG  V  Q+      I EWA +   H + GPG +  +++ ++E+  E RG+ ++A+
Sbjct: 93  RFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAE 152
Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
           LSC+G+L   +YT+                             T+ +A+S    + G + 
Sbjct: 153 LSCKGSLATGEYTK----------------------------GTVDIAKSDKDFVIGFIA 184
Query: 230 QAPSVLASNPGL--LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGI-TQAP 286
           Q   +   + G   L +TPG+ L+  GD  GQQY    DV++  G+D+ +VGRG+  +  
Sbjct: 185 Q-RDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGR 242
Query: 287 DPVEAARRYKEVMWEAYEQRLKKEN 311
           D      RY++  WEAY +R  ++N
Sbjct: 243 DAKVEGERYRKAGWEAYLRRCGQQN 267

>pdb|3GDM|A Chain A, Crystal Structure Of The K93r Mutant Of The Orotidine 5'- Monophosphate Decarboxylase From Saccharomyces Cerevisiae Length = 267

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 318 FETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAV 377
           ++ R A     +++ L +IM +K++NLC +LDV   K+LL L   LGP I +LKTH D +
Sbjct: 6   YKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDIL 65
Query: 378 RDFS-EEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF 416
            DFS E   K L AL+ ++ FL   +  F+ I ++  L++
Sbjct: 66  TDFSMEGTVKPLKALSAKYNFLLFEDRRFADIGNTVKLQY 105

>pdb|1DQW|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase Length = 267

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 38/205 (18%)
Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRISDEL-GEDRGVFLIAQ 169
           K ADIG  V  Q+      I EWA +   H + GPG +  +++ ++E+  E RG+ ++A+
Sbjct: 93  KFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAE 152
Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
           LSC+G+L   +YT                            + T+ +A+S    + G + 
Sbjct: 153 LSCKGSLSTGEYT----------------------------KGTVDIAKSDKDFVIGFIA 184
Query: 230 QAPSVLASNPGL--LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGI-TQAP 286
           Q   +   + G   L +TPG+ L+  GD  GQQY    DV++  G+D+ +VGRG+  +  
Sbjct: 185 Q-RDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGR 242
Query: 287 DPVEAARRYKEVMWEAYEQRLKKEN 311
           D      RY++  WEAY +R  +++
Sbjct: 243 DAKVEGERYRKAGWEAYLRRCGQQD 267

>pdb|1DQW|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase Length = 267

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 318 FETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAV 377
           ++ R A     +++ L +IM +K++NLC +LDV   K+LL L   LGP I +LKTH D +
Sbjct: 6   YKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDIL 65
Query: 378 RDFS-EEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF 416
            DFS E   K L AL+ ++ FL   +  F+ I ++  L++
Sbjct: 66  TDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQY 105

>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease Domain Length = 202

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 58  ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVPHF 101
           E NF K  P E+   G  YDFDS+MHY+R  FS+    DTIVP +
Sbjct: 127 EYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKY 171

>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease Domain In Complex With Partially Bound Dmso Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 58  ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVPHF 101
           E NF K  P E+   G  YDFDS+MHY+R  FS+    DTIVP +
Sbjct: 126 EYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKY 170

>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1) Protease Domain Length = 201

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 58  ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGD-DTIVP 99
           E NF K  P E+   G  YDFDS+MHY+R  FS+    DTI+P
Sbjct: 126 EYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILP 168

>pdb|1DBT|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate Decarboxylase From Bacillus Subtilis Complexed With Ump Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 226 GLVC---QAPSVL-ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRG 281
           G+VC   +A ++  A +P  L +TPGI +++   N   +   P  +   +G+   VVGR 
Sbjct: 158 GVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPA-IAREKGSSAIVVGRS 216
Query: 282 ITQAPDPVEAARRYKEVMWE 301
           IT+A DPV+A   YK V  E
Sbjct: 217 ITKAEDPVKA---YKAVRLE 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	434
3g3d_A	312	UMP synthase, uridine 5'-monophosphate synthase; C	9e-40
3g3d_A	312	UMP synthase, uridine 5'-monophosphate synthase; C	1e-19
3eww_A	260	Ompdecase, orotidine-5'-phosphate decarboxylase; T	1e-39
3eww_A	260	Ompdecase, orotidine-5'-phosphate decarboxylase; T	6e-20
3gdm_A	267	Orotidine 5'-phosphate decarboxylase; orotidine 5'	3e-35
3gdm_A	267	Orotidine 5'-phosphate decarboxylase; orotidine 5'	8e-20
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	7e-20
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	6e-05
3edh_A	201	Bone morphogenetic protein 1; vicinal disulfide, a	4e-16
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	3e-15
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	2e-04
3lq0_A	235	Proastacin; metallopeptidase, zymogen activation,	3e-13
3lq0_A	235	Proastacin; metallopeptidase, zymogen activation,	2e-07
3lqb_A	199	Hatching enzyme, LOC792177 protein; hydrolase, met	5e-13
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	2e-11
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	4e-06
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	1e-10
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	8e-09
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	9e-09
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	3e-08
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	7e-08
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	7e-04
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	7e-08
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	3e-07
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	6e-07
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	8e-07
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	2e-06
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	6e-06
2ffc_A	353	Orotidine 5-monophosphate decarboxylase; PV-PF10_0	3e-05

>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A* Length = 312

 Score =  144 bits (363), Expect = 9e-40
 Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 37/224 (16%)

Query: 89  FSKNGDDTIVPHFVMAQNVLWSIII-LKLADIGAAVGHQFR----LIGEWAHLVTVHSIA 143
            +    D +     +A+   + I    K ADIG  V  Q+      I  WA LV  H + 
Sbjct: 119 LNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVP 178

Query: 144 GPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVL 203
           G G ++ +Q +   L   RG  LIA++S  G+L    YT+                    
Sbjct: 179 GSGVVKGLQEVGLPLH--RGCLLIAEMSSTGSLATGDYTR-------------------- 216

Query: 204 PKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNG 263
                     +++A+     + G +  +   ++  P  L LTPG+ L   GDN GQQYN 
Sbjct: 217 --------AAVRMAEEHSEFVVGFISGSR--VSMKPEFLHLTPGVQLEAGGDNLGQQYNS 266

Query: 264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL 307
           P +VI  RG+D+ +VGRGI  A D +EAA  Y++  WEAY  RL
Sbjct: 267 PQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRL 310

>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A* Length = 312

 Score = 88.2 bits (218), Expect = 1e-19
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 1/96 (1%)

Query: 304 EQRLKKENSRIVTPFETRKADVKC-RISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQ 362
              L  + +     F  R    +   ++S LL +M KK++NLC++ DV+ A++LL L   
Sbjct: 45  GSPLSIKEAPKELSFGARAELPRIHPVASKLLRLMQKKETNLCLSADVSLARELLQLADA 104

Query: 363 LGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFL 398
           LGP I +LKTH D + DF+ +V KEL  LAK HEFL
Sbjct: 105 LGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFL 140

>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ... Length = 260

 Score =  142 bits (358), Expect = 1e-39
 Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 37/224 (16%)

Query: 89  FSKNGDDTIVPHFVMAQNVLWSIII-LKLADIGAAVGHQFR----LIGEWAHLVTVHSIA 143
            +    D +     +A+   + I    K ADIG  V  Q+      I  WA LV  H + 
Sbjct: 67  LNDFTLDVMKELITLAKCHEFLIFENRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVP 126

Query: 144 GPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVL 203
           G G ++ +Q +   L   RG  LIA++S  G+L    YT+                    
Sbjct: 127 GSGVVKGLQEVGLPLH--RGCLLIAEMSSTGSLATGDYTRAA------------------ 166

Query: 204 PKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNG 263
                     +++A+     + G +  +   ++  P  L LTPG+ L   GDN GQQYN 
Sbjct: 167 ----------VRMAEEHSEFVVGFISGSR--VSMKPEFLHLTPGVQLEAGGDNLGQQYNS 214

Query: 264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL 307
           P +VI  RG+D+ +VGRGI  A D +EAA  Y++  WEAY  RL
Sbjct: 215 PQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRL 258

>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ... Length = 260

 Score = 88.1 bits (218), Expect = 6e-20
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 316 TPFETRKADVKC-RISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHS 374
             F  R    +   ++S LL +M KK++NLC++ DV+ A++LL L   LGP I +LKTH 
Sbjct: 5   LSFGARAELPRIHPVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHV 64

Query: 375 DAVRDFSEEVQKELTALAKQHEFL 398
           D + DF+ +V KEL  LAK HEFL
Sbjct: 65  DILNDFTLDVMKELITLAKCHEFL 88

>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A* Length = 267

 Score =  130 bits (328), Expect = 3e-35
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 36/205 (17%)

Query: 114 LKLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELG-EDRGVFLIA 168
            + ADIG  V  Q+      I EWA +   H + GPG +  +++ ++E+  E RG+ ++A
Sbjct: 92  RRFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151

Query: 169 QLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLV 228
           +LSC+G+L   +YT+                             T+ +A+S    + G +
Sbjct: 152 ELSCKGSLATGEYTK----------------------------GTVDIAKSDKDFVIGFI 183

Query: 229 CQAPSV-LASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGI-TQAP 286
            Q            L +TPG+ L+  GD  GQQY    DV+   G+D+ +VGRG+  +  
Sbjct: 184 AQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVV-STGSDIIIVGRGLFAKGR 242

Query: 287 DPVEAARRYKEVMWEAYEQRLKKEN 311
           D      RY++  WEAY +R  ++N
Sbjct: 243 DAKVEGERYRKAGWEAYLRRCGQQN 267

>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A* Length = 267

 Score = 87.8 bits (217), Expect = 8e-20
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 316 TPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSD 375
             ++ R A     +++ L +IM +K++NLC +LDV   K+LL L   LGP I +LKTH D
Sbjct: 4   ATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVD 63

Query: 376 AVRDFS-EEVQKELTALAKQHEFL 398
            + DFS E   K L AL+ ++ FL
Sbjct: 64  ILTDFSMEGTVKPLKALSAKYNFL 87

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* Length = 208

 Score = 86.6 bits (215), Expect = 7e-20
 Identities = 40/194 (20%), Positives = 60/194 (30%), Gaps = 54/194 (27%)

Query: 114 LKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSC 172
           LKLADI        R +    A  V VH+  G   +  ++       E   + ++ ++S 
Sbjct: 58  LKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVK-------ELGEIIMVVEMSH 110

Query: 173 QGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAP 232
            G L                L                  E     +       G++    
Sbjct: 111 PGAL-----------EFINPLTDR-------------FIEVANEIEP-----FGVIAPGT 141

Query: 233 SVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQA 285
                         G+  L PGI         G Q     D +   GAD  +VGR I  A
Sbjct: 142 RPERIGYIRDRLKEGIKILAPGI---------GAQGGKAKDAVKA-GADYIIVGRAIYNA 191

Query: 286 PDPVEAARRYKEVM 299
           P+P EAA+   + +
Sbjct: 192 PNPREAAKAIYDEI 205

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* Length = 208

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 7/55 (12%), Positives = 24/55 (43%)

Query: 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFL 398
           + +ALDV + +  + + + +  +I+++K +   +     ++ + L          
Sbjct: 2   IVLALDVYEGERAIKIAKSVKDYISMIKVNWPLILGSGVDIIRRLKEETGVEIIA 56

>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} PDB: 3edg_A 3edi_A Length = 201

 Score = 75.6 bits (186), Expect = 4e-16
 Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 58  ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVP 99
           E NF K  P E+   G  YDFDS+MHY+R  FS+    DTIVP
Sbjct: 126 EYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVP 168

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... Length = 228

 Score = 73.8 bits (182), Expect = 3e-15
 Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 54/199 (27%)

Query: 114 LKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSC 172
            K+ADI        R   +  A  + VH   G   ++    +++E+G  R VFL+ ++S 
Sbjct: 71  FKVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMG--REVFLLTEMSH 128

Query: 173 QG--NLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
            G    I     ++                              ++     G+    V  
Sbjct: 129 PGAEMFIQGAADEI-----------------------------ARMGVD-LGV-KNYVGP 157

Query: 231 APSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGIT 283
           +                   ++PG+     G + G+          LR AD  +VGR I 
Sbjct: 158 STRPERLSRLREIIGQDSFLISPGVGAQ--GGDPGET---------LRFADAIIVGRSIY 206

Query: 284 QAPDPVEAARRYKEVMWEA 302
            A +P  AA    E + + 
Sbjct: 207 LADNPAAAAAGAIESIKDL 225

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... Length = 228

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLK 371
           + S  +D+M    + L +A+D+    D L +T ++  +I  +K
Sbjct: 1   MRSRRVDVM-DVMNRLILAMDLMNRDDALRVTGEVREYIDTVK 42

>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, Z disulfide bond, hydrolase, metal-binding, metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A Length = 235

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 58  ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNG--DDTIVP 99
             NF     +     G  Y + S+MHY + +FS      +TIVP
Sbjct: 159 TSNFDID--TYSRYVGEDYQYYSIMHYGKYSFSIQWGVLETIVP 200

>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, Z disulfide bond, hydrolase, metal-binding, metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A Length = 235

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 12 NFWEESGQFEGDIML-----EGPERTGVISSIDRWPGGLIPYYIDD 52
            +   G FEGDI L            ++     W GG+IPY    
Sbjct: 10 ALYYNDGMFEGDIKLRAGRQPARVGAAILGDEYLWSGGVIPYTFAG 55

>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio} Length = 199

 Score = 66.7 bits (163), Expect = 5e-13
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 58  ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVP 99
             NF K    +  +    YD+ S+MHY + AF+   G +TI P
Sbjct: 132 AYNFLKQ---KTNNQNTPYDYGSLMHYGKTAFAIQPGLETITP 171

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 34/186 (18%)

Query: 114 LKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQ 173
            K AD G  V     + G  A  +T    A    ++  ++  +++  D+G   +      
Sbjct: 65  TKCADAGGTVAKNNAVRG--ADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYG-- 120

Query: 174 GNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS 233
                  +T    +              +       +    + A                
Sbjct: 121 ------DWTYDQAQQW------------LDAGISQAIYHQSRDALLAGETWGEKDLNKVK 162

Query: 234 VLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAAR 293
            L      + +T G+             +       +      + GRGIT+A +P  AAR
Sbjct: 163 KLIEMGFRVSVTGGL-----------SVDTLKLFEGV-DVFTFIAGRGITEAKNPAGAAR 210

Query: 294 RYKEVM 299
            +K+ +
Sbjct: 211 AFKDEI 216

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 337 MVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHE 396
           M K+  NL VALD +  K  +T    +G  + V++  +  +     E+ + L +L     
Sbjct: 1   MTKQLPNLQVALDHSNLKGAITAAVSVGNEVDVIEAGTVCLLQVGSELVEVLRSLFPDKI 60

Query: 397 FL 398
            +
Sbjct: 61  IV 62

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} Length = 211

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 34/190 (17%), Positives = 53/190 (27%), Gaps = 38/190 (20%)

Query: 114 LKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQ 173
            K+ D G          G  A  VTV  +     +Q   R + E G+   V +I      
Sbjct: 60  AKIMDGGHFESQLLFDAG--ADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDD-- 115

Query: 174 GNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS 233
                                + L         D     T    Q+        +     
Sbjct: 116 ----------------LPARVRLLEEAGA----DMLAVHTGTDQQAAGRKPIDDL--ITM 153

Query: 234 VLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAAR 293
           +       + +  GI                 D   L G D+ +VG  IT A DP   AR
Sbjct: 154 LKVRRKARIAVAGGISSQ-----------TVKDYALL-GPDVVIVGSAITHAADPAGEAR 201

Query: 294 RYKEVMWEAY 303
           +  +V+ + +
Sbjct: 202 KISQVLLQHH 211

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Length = 216

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 35/208 (16%), Positives = 58/208 (27%), Gaps = 47/208 (22%)

Query: 97  IVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISD 156
            V            +   K+AD G  +          A  VTV   A     +    ++ 
Sbjct: 46  AVRDLKALYPHKIVLADAKIADAGKILSRMCFEAN--ADWVTVICCADINTAKGALDVAK 103

Query: 157 ELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKL 216
           E   D  + L                       T E  +   +  +       V    + 
Sbjct: 104 EFNGDVQIELTGYW-------------------TWEQAQQWRDAGI----GQVVYHRSRD 140

Query: 217 AQSFPGLIAGLVCQAPSV-----LASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLR 271
           AQ      AG+      +     L+     + +T G+ L                   + 
Sbjct: 141 AQ-----AAGVAWGEADITAIKRLSDMGFKVTVTGGLALED-----------LPLFKGI- 183

Query: 272 GADLGVVGRGITQAPDPVEAARRYKEVM 299
              + + GR I  A  PVEAAR++K  +
Sbjct: 184 PIHVFIAGRSIRDAASPVEAARQFKRSI 211

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 2e-09
 Identities = 62/450 (13%), Positives = 121/450 (26%), Gaps = 140/450 (31%)

Query: 54  HFCTERNFKKYPPSEIT-----DFGVGYDFDSVMHYSRKAFSKNGDDTIV--PHFVMAQN 106
           H   E    +Y   +I       F   +D   V    +   SK   D I+     V    
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 107 VLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFL 166
            L+  ++ K       +  +F                          + + L  +   FL
Sbjct: 66  RLFWTLLSK----QEEMVQKF--------------------------VEEVLRINYK-FL 94

Query: 167 IAQLSCQGN---LIDEKYTQVGFKAITLELKKYLCN-NQVLPKCD-------NDVQETLK 215
           ++ +  +     ++   Y         +E +  L N NQV  K +         +++ L 
Sbjct: 95  MSPIKTEQRQPSMMTRMY---------IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 216 LAQSFPGLI------------AGLVCQAPSVLASNPGLLQLTPGIH-LNQTGDNKGQQYN 262
             +    ++            A  VC +  V             I  LN          N
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF------KIFWLN-LK-----NCN 193

Query: 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKE------------ 310
            P  V+ +    L  +    T   D     +       +A  +RL K             
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLLVLLN 252

Query: 311 --NSRIVTPFETRKADVKCRI------SSTLLDIMVKKKSNLCV-----ALDVTQAKDLL 357
             N++    F     ++ C+I            +     +++ +      L   + K LL
Sbjct: 253 VQNAKAWNAF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 358 ---------TLTRQ---LGP-HIAVL--KTHSDAVR-DFSEEVQKE--LTALAKQHEFLR 399
                     L R+     P  ++++           D  + V  +   T +      L 
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 400 SRNGWFSPILSSFSLRFRDD-----KTLAM 424
                +  +    S+ F          L++
Sbjct: 368 PAE--YRKMFDRLSV-FPPSAHIPTILLSL 394

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218

 Score = 54.6 bits (131), Expect = 8e-09
 Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 37/185 (20%)

Query: 114 LKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQ 173
           +K  D GA +       G  A  +TV + A    +   ++++DEL  +  + +       
Sbjct: 66  MKTTDGGAILSRMAFEAG--ADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNW--- 120

Query: 174 GNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS 233
                           T++  K      V       +    + A+               
Sbjct: 121 ----------------TMQDAKAW----VDLGITQAIYHRSRDAELAGIGWTTDDLDKMR 160

Query: 234 VLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAAR 293
            L++    L +T GI                     +      + GR +  A     AA 
Sbjct: 161 QLSALGIELSITGGIVPE-----------DIYLFEGI-KTKTFIAGRALAGAEGQQTAAA 208

Query: 294 RYKEV 298
             +++
Sbjct: 209 LREQI 213

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Length = 207

 Score = 54.2 bits (130), Expect = 9e-09
 Identities = 28/186 (15%), Positives = 45/186 (24%), Gaps = 39/186 (20%)

Query: 114 LKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQ 173
           +K  D G          G  A LVTV   A    +    + +    +   V LI      
Sbjct: 60  MKTMDAGELEADIAFKAG--ADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIED-- 115

Query: 174 GNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS 233
                                + +                    Q+ PG     +     
Sbjct: 116 ----------------KATRAQEVRALGA----KFVEMHAGLDEQAKPGFDLNGLLA--- 152

Query: 234 VLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAAR 293
                     +  G+           +      V    GA++ V G  I  A DP  AA+
Sbjct: 153 AGEKARVPFSVAGGV-----------KVATIPAVQK-AGAEVAVAGGAIYGAADPAAAAK 200

Query: 294 RYKEVM 299
             +  +
Sbjct: 201 ELRAAI 206

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 Length = 213

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 21/102 (20%)

Query: 207 DNDVQETL----KLAQSFPGLIAGLVC--QAPSVLASNPGLLQLTPGIHLNQTGDNKGQQ 260
           +  +++ +    KL +   G    ++    A ++     G + L PGI +         Q
Sbjct: 121 EGSLEDYMDRIEKLNKL--GC-DFVLPGPWAKALREKIKGKI-LVPGIRM---EVKADDQ 173

Query: 261 YNGPTDVITLR----GADLGVVGRGITQAPDPVEAARRYKEV 298
                DV+TL      A+  V+GR I  + +P E  +R KE+
Sbjct: 174 ----KDVVTLEEMKGIANFAVLGREIYLSENPREKIKRIKEM 211

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} Length = 239

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 50/199 (25%), Positives = 73/199 (36%), Gaps = 41/199 (20%)

Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIA--QL 170
           LK  DI   V    R + E    ++ +H   G   ++ +      +       LI    L
Sbjct: 66  LKFYDIPQTVAGACRAVAELGVWMMNIHISGGRTMMETVVNALQSITLKEKPLLIGVTIL 125

Query: 171 -SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
            S     +D             +LK      +V     + V     LA+S  GL  G+VC
Sbjct: 126 TS-----LDGS-----------DLKTLGIQEKV----PDIVCRMATLAKS-AGL-DGVVC 163

Query: 230 QAPSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGR 280
              S           +   L +TPGI L    D KG Q     P   I   G+D  V+GR
Sbjct: 164 ---SAQEAALLRKQFDRNFLLVTPGIRLE--TDEKGDQKRVMTPRAAIQA-GSDYLVIGR 217

Query: 281 GITQAPDPVEAARRYKEVM 299
            ITQ+ DP++A     + +
Sbjct: 218 PITQSTDPLKALEAIDKDI 236

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} Length = 239

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 336 IMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLK 371
            M K    + VA+D    +        L P +  LK
Sbjct: 3   AMEKPDPKVIVAIDAGTVEQARAQINPLTPELCHLK 38

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* Length = 246

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 51/207 (24%), Positives = 72/207 (34%), Gaps = 36/207 (17%)

Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVF--LIA-- 168
           LKL DI   V    + +    A LV VH+  G   ++      D       +    IA  
Sbjct: 62  LKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVT 121

Query: 169 QL-SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL 227
           QL S      DE+            L + L  ++ L +    V     LA+   GL  G+
Sbjct: 122 QLTS-----TDER-----------MLHEELWISRPLVET---VAHYAALAKE-SGL-DGV 160

Query: 228 VCQAPSVLA----SNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGRG 281
           VC A              L +TPGI      D    Q     P     L G+D  V+GR 
Sbjct: 161 VCSANEAAFIKERCGASFLAVTPGIRFA--DDAAHDQVRVVTPRKARAL-GSDYIVIGRS 217

Query: 282 ITQAPDPVEAARRYKEVMWEAYEQRLK 308
           +T+A DP+    R +        +   
Sbjct: 218 LTRAADPLRTYARLQHEWNGGERESTT 244

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A Length = 245

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 42/194 (21%), Positives = 63/194 (32%), Gaps = 42/194 (21%)

Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIA--QL 170
           LK  DI     H      +    +V VH+  G   +   +      G+D  + LIA   L
Sbjct: 72  LKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPL-LIAVTVL 130

Query: 171 -SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
            S     ++             +L              +  +    L Q   GL  G+VC
Sbjct: 131 TS-----MEAS-----------DLVDLGMTLSP----ADYAERLAALTQKC-GL-DGVVC 168

Query: 230 QAPSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGR 280
              S                 +TPGI     G   G Q     P   ++  G D  V+GR
Sbjct: 169 ---SAQEAVRFKQVFGQEFKLVTPGIRPQ--GSEAGDQRRIMTPEQALSA-GVDYMVIGR 222

Query: 281 GITQAPDPVEAARR 294
            +TQ+ DP +  + 
Sbjct: 223 PVTQSVDPAQTLKA 236

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 Length = 239

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 53/198 (26%), Positives = 72/198 (36%), Gaps = 36/198 (18%)

Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVF--LIA-- 168
           LKL DI   V    + +      LV VH+  G   +Q      +E          LIA  
Sbjct: 61  LKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVT 120

Query: 169 QL-SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL 227
           QL S       E+            +K  L   + L      V    K A+   GL  G+
Sbjct: 121 QLTS-----TSEQ-----------IMKDELLIEKSLIDT---VVHYSKQAEES-GL-DGV 159

Query: 228 VCQAPSVLA----SNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGRG 281
           VC      A     +P  L +TPGI ++   D    Q     P       G+   VVGR 
Sbjct: 160 VCSVHEAKAIYQAVSPSFLTVTPGIRMS--EDAANDQVRVATPAIAREK-GSSAIVVGRS 216

Query: 282 ITQAPDPVEAARRYKEVM 299
           IT+A DPV+A +  +   
Sbjct: 217 ITKAEDPVKAYKAVRLEW 234

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* Length = 255

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 44/194 (22%), Positives = 65/194 (33%), Gaps = 42/194 (21%)

Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIA--QL 170
           LK  DI        +   E    +V VH+  G   +   + I +  G++R   LI    L
Sbjct: 85  LKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKER-PLLIGVTVL 143

Query: 171 -SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
            S     ++             +L+     +       + V     L ++  GL  G+VC
Sbjct: 144 TS-----MESA-----------DLQGIGILSAP----QDHVLRLATLTKN-AGL-DGVVC 181

Query: 230 QAPSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGR 280
              S                 +TPGI     G  +G Q     P   I   G+D  V+GR
Sbjct: 182 ---SAQEASLLKQHLGREFKLVTPGIRP--AGSEQGDQRRIMTPAQAIAS-GSDYLVIGR 235

Query: 281 GITQAPDPVEAARR 294
            ITQA  P      
Sbjct: 236 PITQAAHPEVVLEE 249

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} Length = 259

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 44/201 (21%), Positives = 68/201 (33%), Gaps = 42/201 (20%)

Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVF--LIA-- 168
           LK+ DI   V +  + + +      TVH++ G   ++  +               L+A  
Sbjct: 63  LKMHDIPNTVYNGAKALAKLGITFTTVHALGGSQMIKSAKDGLIAGTPAGHSVPKLLAVT 122

Query: 169 QL-SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL 227
           +L S     I +             L+        + +    V    K+A+   G   G+
Sbjct: 123 ELTS-----ISDD-----------VLRNEQNCRLPMAEQ---VLSLAKMAKHS-GA-DGV 161

Query: 228 VCQAPSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVV 278
           +C   S L             L +TPGI     G+ K  Q     P       G+   VV
Sbjct: 162 IC---SPLEVKKLHENIGDDFLYVTPGIRPA--GNAKDDQSRVATPKMAKEW-GSSAIVV 215

Query: 279 GRGITQAPDPVEAARRYKEVM 299
           GR IT A DP  A    K+  
Sbjct: 216 GRPITLASDPKAAYEAIKKEF 236

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} Length = 303

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 36/197 (18%), Positives = 65/197 (32%), Gaps = 34/197 (17%)

Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL-S 171
           LK  DI   +      + +    ++ +H+ AG   +QE+     +  +   V  ++ L S
Sbjct: 83  LKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLSKFSKRPLVLAVSALTS 142

Query: 172 CQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQA 231
                 DE+           ++++              V    K++    GL  G+VC  
Sbjct: 143 -----FDEENFF---SIYRQKIEEA-------------VINFSKISYE-NGL-DGMVCSV 179

Query: 232 PSVL----ASNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGRGITQA 285
                    ++   L LTPGI     G+    Q              +D  VVGR I + 
Sbjct: 180 FESKKIKEHTSSNFLTLTPGIRP--FGETNDDQKRVANLAMAREN-LSDYIVVGRPIYKN 236

Query: 286 PDPVEAARRYKEVMWEA 302
            +P     +    +   
Sbjct: 237 ENPRAVCEKILNKIHRK 253

>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A* Length = 353

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 37/203 (18%), Positives = 76/203 (37%), Gaps = 25/203 (12%)

Query: 111 IIILKLADIGAAVGHQFRLIGEW--AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIA 168
           I+ +K+ DIG  V H  + I ++  +   T +   G   L++I  + +E       F++ 
Sbjct: 165 ILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMGTQMLRDI-CLDEECKRYYSTFVLV 223

Query: 169 QLSC-QGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL 227
           + +    ++   + +  G +A  +  ++     + L   +N       +  +    I  +
Sbjct: 224 KTTNADSHIFQNRLSLDGKEAYVVIAEEVQKMAKQLHLEENGEFVGFVVGANCYDEIKKI 283

Query: 228 VCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITL-----RGADLGVVGRGI 282
               P         + L PG+         G Q      ++           L  VGR I
Sbjct: 284 RELFPD------CYI-LAPGV---------GAQKGDLRKMLCNGYSKNYEKVLINVGRAI 327

Query: 283 TQAPDPVEAARRYKEVMWEAYEQ 305
           T++  P +AAR Y + + E   +
Sbjct: 328 TKSGSPQQAAREYHQQIKEVLAE 350

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	434
3gdm_A	267	Orotidine 5'-phosphate decarboxylase; orotidine 5'	100.0
3g3d_A	312	UMP synthase, uridine 5'-monophosphate synthase; C	100.0
3eww_A	260	Ompdecase, orotidine-5'-phosphate decarboxylase; T	100.0
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	100.0
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	100.0
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	100.0
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	100.0
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	100.0
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	99.97
3qw3_A	255	Orotidine-5-phosphate decarboxylase/orotate phosph	99.97
3n3m_A	342	Orotidine 5'-phosphate decarboxylase; P. falciparu	99.96
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	99.95
3qw4_B	453	UMP synthase; N-terminal orotidine monophosphate d	99.95
3gdm_A	267	Orotidine 5'-phosphate decarboxylase; orotidine 5'	99.95
3eww_A	260	Ompdecase, orotidine-5'-phosphate decarboxylase; T	99.95
3g3d_A	312	UMP synthase, uridine 5'-monophosphate synthase; C	99.94
2fds_A	352	Orotidine-monophosphate-decarboxylase; TIM barrel,	99.94
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	99.94
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	99.93
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	99.93
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	99.93
2ffc_A	353	Orotidine 5-monophosphate decarboxylase; PV-PF10_0	99.93
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	99.89
3l52_A	284	Orotidine 5'-phosphate decarboxylase; TIM barrel,	99.88
3lq0_A	235	Proastacin; metallopeptidase, zymogen activation,	99.84
3r89_A	290	Orotidine 5'-phosphate decarboxylase; PSI-biology,	99.83
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	99.81
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	99.81
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.8
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	99.77
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	99.73
3qw3_A	255	Orotidine-5-phosphate decarboxylase/orotate phosph	99.73
3l52_A	284	Orotidine 5'-phosphate decarboxylase; TIM barrel,	99.73
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	99.72
3r89_A	290	Orotidine 5'-phosphate decarboxylase; PSI-biology,	99.71
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	99.71
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	99.7
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	99.7
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	99.69
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	99.63
2fds_A	352	Orotidine-monophosphate-decarboxylase; TIM barrel,	99.62
3qw4_B	453	UMP synthase; N-terminal orotidine monophosphate d	99.59
3edh_A	201	Bone morphogenetic protein 1; vicinal disulfide, a	99.58
3lqb_A	199	Hatching enzyme, LOC792177 protein; hydrolase, met	99.56
3n3m_A	342	Orotidine 5'-phosphate decarboxylase; P. falciparu	99.56
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	99.49
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	99.45
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	99.44
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	99.35
2ffc_A	353	Orotidine 5-monophosphate decarboxylase; PV-PF10_0	99.32
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	99.3
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	99.27
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	99.22
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	99.22
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	98.94
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	98.93
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	98.79
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	98.78
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	98.76
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	98.44
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	98.29
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	98.14
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	97.92
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	97.72
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	97.45
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	97.0
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	96.91
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	96.8
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	96.72
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	96.28
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	95.84
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	95.71
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	95.39
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	94.36
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	94.15
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	93.46
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	93.07
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	92.99
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	92.98
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	92.82
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	92.05
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	92.02
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	91.6
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	91.02
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	90.69
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	88.49
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	87.59
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	87.21
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	86.43
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	85.97
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	85.27
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	84.99
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	84.77
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	84.39
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	84.19
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	84.18
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	80.44
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	80.28

>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A*

Probab=100.00  E-value=2.3e-45  Score=359.21  Aligned_cols=205  Identities=29%  Similarity=0.534  Sum_probs=170.0

Q ss_pred             ccceecccchhhhccCCCc-cccccchhchhhhHHHh-hhcccCHHHHHHHHHH----HhccccceEEEcccCCchhHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDD-TIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQE  150 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~-Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~----~~~~~~d~vTvH~~~G~~ml~~  150 (434)
                      ++-.+.+-|...|...|.. .+.......++.++.+| |+|++||||||..+++    .+..|+|++|||+++|.+||++
T Consensus        53 ~~v~~~KvG~~l~~~~G~~~~v~~L~~l~~~~g~~IflDlK~~DIpnTv~~~y~~a~~~~~~~ad~vTVH~~~G~~~~~a  132 (267)
T 3gdm_A           53 PKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRRFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSG  132 (267)
T ss_dssp             GGCSEEEECGGGCSSCCTTTTHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHSTTTCHHHHCSEEEEEGGGCTHHHHH
T ss_pred             CcCcEEEECHHHHHhcCHHHHHHHHHHHHhhcCCeEEEEeccccchHHHHHHHHHHHHHHHhhCCEEEEeccCCHHHHHH
Confidence            4556777778888777766 65444333333466677 9999999999998765    3445799999999999999999


Q ss_pred             HHHHhhhhCC-CCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEe
Q psy4093         151 IQRISDELGE-DRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC  229 (434)
Q Consensus       151 a~~~~~~~~~-~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVc  229 (434)
                      +++++.+.+. .+++++|++|||++++....+.                            +.|+++|+++++|++||||
T Consensus       133 a~~~a~~~~~~~~~lllla~mss~~~l~~~~~~----------------------------~~v~~~A~~a~~g~dGvV~  184 (267)
T 3gdm_A          133 LKQAAEEVTKEPRGLLMLAELSCKGSLATGEYT----------------------------KGTVDIAKSDKDFVIGFIA  184 (267)
T ss_dssp             HHHHHHHHCCSCCEEEEECSCCSTTCCCCHHHH----------------------------HHHHHHHTTCTTTEEEEEC
T ss_pred             HHHHHHhhcccCCCeEEEEEcCCccccccCCHH----------------------------HHHHHHHHHHhcCCCeEEe
Confidence            9998876511 1679999999998777544442                            4899999999889999999


Q ss_pred             Cccchh-hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccC-CCCHHHHHHHHHHHHHHHHHHHH
Q psy4093         230 QAPSVL-ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQ-APDPVEAARRYKEVMWEAYEQRL  307 (434)
Q Consensus       230 s~~e~~-~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~-A~DP~~aa~~i~~~~~~a~~~~~  307 (434)
                      |+++.. .++++|++||||||++..|++.|||++||++|+ ++||||||||||||+ |+||++++++|+++.|+||++|+
T Consensus       185 s~~~~~~~~g~~f~~vTPGIr~~~~g~~~gdQ~rTP~~Ai-~~GaD~iVVGRpI~~~a~dP~~aa~~i~~~~w~ay~~~~  263 (267)
T 3gdm_A          185 QRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVV-STGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLRRC  263 (267)
T ss_dssp             SSCCCCGGGTCCCEEEECSEECCCTTCTTGGGSEEHHHHH-HTTCSEEEECGGGTSTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CccchhhccCCCCEEECCCcCCCcCCCccccCCCCHHHHH-HcCCCEEEEChhhccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            998874 789999999999999756899999999999999 999999999999999 99999999999999999999999


Q ss_pred             hhc
Q psy4093         308 KKE  310 (434)
Q Consensus       308 ~~~  310 (434)
                      .++
T Consensus       264 ~~~  266 (267)
T 3gdm_A          264 GQQ  266 (267)
T ss_dssp             ---
T ss_pred             hcc
Confidence            754

>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*

Probab=100.00  E-value=7.4e-43  Score=347.27  Aligned_cols=200  Identities=36%  Similarity=0.613  Sum_probs=164.6

Q ss_pred             ccceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHH----HhccccceEEEcccCCchhHHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEI  151 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~----~~~~~~d~vTvH~~~G~~ml~~a  151 (434)
                      +|-.+.+-|...|...|...+.......+..++.+| |+|++||||||..+++    .+..|+|++|||+++|.+||+++
T Consensus       107 ~~v~~vKvG~~l~~~~G~~~v~~L~~~a~~~g~~IflDlK~~DIpnTv~~a~~~a~~~~a~~aD~vTVHa~~G~~~m~aa  186 (312)
T 3g3d_A          107 PSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGL  186 (312)
T ss_dssp             GGCSEEEECGGGCTTCCHHHHHHHHHHHHHHTCEEEEEEEECSCHHHHHHHHHCTTTCHHHHCSEEEEESTTCTHHHHHH
T ss_pred             CCceEEEEcHHHHHHhCHHHHHHHHHHHhhCCCEEEEECcccccHHHHHHHHHHHHHhhhccCCEEEEccCCCHHHHHHH
Confidence            345667777777776675555443333233456667 9999999999999887    33357999999999999999999


Q ss_pred             HHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCc
Q psy4093         152 QRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQA  231 (434)
Q Consensus       152 ~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~  231 (434)
                      +++..+.+  .++++||+|++++++....+.                            +.|+++|+++..|++|||||+
T Consensus       187 ~e~~~~~~--~gV~vLtsms~~g~l~~~~~~----------------------------~~V~~lA~~~~~gldGvVcs~  236 (312)
T 3g3d_A          187 QEVGLPLH--RGCLLIAEMSSTGSLATGDYT----------------------------RAAVRMAEEHSEFVVGFISGS  236 (312)
T ss_dssp             HHHHTTTT--CEEEEECCCSSTTCCCCHHHH----------------------------HHHHHHHHHTTTTEEEEECSS
T ss_pred             HHhhhhcC--CeEEEEEecCCccccccCCHH----------------------------HHHHHHHHhhhCCCCeEEeCh
Confidence            99865444  679999999987766544443                            488999999766899999999


Q ss_pred             cchhhcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4093         232 PSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLK  308 (434)
Q Consensus       232 ~e~~~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~  308 (434)
                       |+ .++++|++|||||||+..+++.|||++||++|++++||||||||||||+|+||++++++|+++.|+||++|+.
T Consensus       237 -e~-~~~~dfl~vTPGIrp~~~~~~~g~qv~TP~~Ai~~~GaD~iVVGRpIt~A~dP~~aa~~i~~~~w~ay~~~~~  311 (312)
T 3g3d_A          237 -RV-SMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRLG  311 (312)
T ss_dssp             -CC-CCCTTSEEEECSBCSSSEECTTSCEEBCHHHHHHTTCCSEEEESHHHHTSSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -hh-ccCCCeEEEcCCcCCCcCCCCcCCcccCHHHHHHhCCCCEEEEChhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence             55 4789999999999998555788999999999997799999999999999999999999999999999999985

>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ...

Probab=100.00  E-value=9.8e-42  Score=332.46  Aligned_cols=199  Identities=36%  Similarity=0.619  Sum_probs=161.0

Q ss_pred             cceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHH----HhccccceEEEcccCCchhHHHHH
Q psy4093          78 FDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQ  152 (434)
Q Consensus        78 y~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~----~~~~~~d~vTvH~~~G~~ml~~a~  152 (434)
                      +-.+.+-|...|...|...+.......+..++.+| |+|++||||||..+++    .+..|+|++|||+++|.+||++++
T Consensus        56 ~v~~~KvG~~l~~~~G~~~v~~L~~~a~~~g~~VflDlK~~DIpnTv~~a~~~a~~~~~~~ad~vTVha~~G~~~~~aa~  135 (260)
T 3eww_A           56 SICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFENRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQ  135 (260)
T ss_dssp             GCSEEEECGGGCTTCCHHHHHHHHHHHHHHTCEEEEEEEECSCHHHHHHHHHCTTTCGGGTCSEEEEESTTCTHHHHHHH
T ss_pred             CceEEEEcHHHHHHhCHHHHHHHHHHHhhcCCeEEEEeeccccHHHHHHHHHHHHHhhhccCCEEEEeCCCCHHHHHHHH
Confidence            44566666666666665444333232223456667 9999999999999886    444589999999999999999999


Q ss_pred             HHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCcc
Q psy4093         153 RISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAP  232 (434)
Q Consensus       153 ~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~  232 (434)
                      ++..+.+  .++++||+|++++++....+.                            +.|+++|+++..|++|||||+ 
T Consensus       136 ~~~~~~~--~gv~vLtsms~~g~l~~~~~~----------------------------e~v~~~A~~~~~g~dGvV~s~-  184 (260)
T 3eww_A          136 EVGLPLH--RGCLLIAEMSSTGSLATGDYT----------------------------RAAVRMAEEHSEFVVGFISGS-  184 (260)
T ss_dssp             HHHTTTT--CEEEEECCCCSTTCCCCTHHH----------------------------HHHHHHHHHTTTTEEEEECSS-
T ss_pred             HhhcccC--CeEEEEEEcCCchhcccCCHH----------------------------HHHHHHHHhccCCCceEEeCh-
Confidence            9865444  678999998887666543332                            489999999655899999999 


Q ss_pred             chhhcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4093         233 SVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLK  308 (434)
Q Consensus       233 e~~~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~  308 (434)
                      |+ .++++|++|||||||+..+++.|+|++||.+|++++|||+||||||||+|+||.+++++|++..|+||++|+.
T Consensus       185 ~~-~~~~~f~~vTPGIr~~~~~~~~~~r~~tp~~a~~~aGad~iVvGR~I~~a~dp~~a~~~~~~~~w~ay~~~~~  259 (260)
T 3eww_A          185 RV-SMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRLG  259 (260)
T ss_dssp             CC-CCCTTSEEEECSBCSSSEECTTSCEEBCHHHHHTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hh-ccCCCcEEECCCcCCCCCCCccCCCccCHHHHHHhcCCCEEEEChhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            44 4789999999999998555778888999999996799999999999999999999999999999999999985

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}

Probab=100.00  E-value=1e-37  Score=304.06  Aligned_cols=201  Identities=23%  Similarity=0.258  Sum_probs=153.3

Q ss_pred             ccc-eecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHH
Q psy4093          77 DFD-SVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQR  153 (434)
Q Consensus        77 Dy~-SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~  153 (434)
                      ++- .+.+-|...|...|...+.....    .++.+| |+|++|||||+..+++.+.+ |+|++|||+++|.+||+++++
T Consensus        28 ~~v~~~~KvG~~l~~~~G~~~v~~Lk~----~g~~VflDlK~~DIpnTv~~a~~~~~~~gad~vTVh~~~G~~~~~aa~~  103 (259)
T 3tfx_A           28 DPHDVFVKVGMELFYNAGIDVIKKLTQ----QGYKIFLDLKMHDIPNTVYNGAKALAKLGITFTTVHALGGSQMIKSAKD  103 (259)
T ss_dssp             CGGGCEEEECHHHHHHHCHHHHHHHHH----TTCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHH
T ss_pred             cccceEEEeCHHHHHhcCHHHHHHHHH----CCCcEEEEecccccchHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHH
Confidence            344 66777777777666554433322    234556 99999999999999998888 699999999999999999999


Q ss_pred             Hhhhh---CC-CCceEEEEEeCCCCCCChHHHH-hhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceE
Q psy4093         154 ISDEL---GE-DRGVFLIAQLSCQGNLIDEKYT-QVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGL  227 (434)
Q Consensus       154 ~~~~~---~~-~~~v~~v~~lss~~sl~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~Gv  227 (434)
                      ++.+.   |. ...+++||+|||.   +++++. ++|+...+                   .+.|+++|+++.+ |++||
T Consensus       104 ~~~~~~~~g~~~~~li~Vt~lTS~---~~~~l~~~~g~~~~~-------------------~e~v~~~A~~a~~~G~dGv  161 (259)
T 3tfx_A          104 GLIAGTPAGHSVPKLLAVTELTSI---SDDVLRNEQNCRLPM-------------------AEQVLSLAKMAKHSGADGV  161 (259)
T ss_dssp             HHHHHSCTTSCCCEEEEECSCTTC---CHHHHHHTSCBSSCH-------------------HHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHhcccCCCCceEEEEEEeCCC---CHHHHHHHhCCCCCH-------------------HHHHHHHHHHHHHhCCCEE
Confidence            87643   21 1358889999984   556663 44444321                   3578888888877 89999


Q ss_pred             EeCccchh----hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         228 VCQAPSVL----ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       228 Vcs~~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                      |||++|+.    .++++|++||||||++  |++.|||  ++||.+|+ ++|||+|||||+|++|+||.+++++|++ +|+
T Consensus       162 V~s~~e~~~ir~~~~~~f~~vtPGIr~~--g~~~gDQ~Rv~T~~~a~-~aGad~iVvGr~I~~a~dp~~a~~~i~~-~~~  237 (259)
T 3tfx_A          162 ICSPLEVKKLHENIGDDFLYVTPGIRPA--GNAKDDQSRVATPKMAK-EWGSSAIVVGRPITLASDPKAAYEAIKK-EFN  237 (259)
T ss_dssp             ECCGGGHHHHHHHHCSSSEEEECCCCCC-------------CHHHHH-HTTCSEEEECHHHHTSSSHHHHHHHHHH-HHT
T ss_pred             EECHHHHHHHHhhcCCccEEEcCCcCCC--CCCcCCccccCCHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHHHH-HHH
Confidence            99999885    6889999999999998  8888999  58999999 9999999999999999999999999998 688


Q ss_pred             HHHHHH
Q psy4093         302 AYEQRL  307 (434)
Q Consensus       302 a~~~~~  307 (434)
                      +|+.-.
T Consensus       238 ~~~~~~  243 (259)
T 3tfx_A          238 AENLYF  243 (259)
T ss_dssp             CTTCSC
T ss_pred             HHHHHH
Confidence            776544

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}

Probab=100.00  E-value=1.4e-36  Score=293.04  Aligned_cols=191  Identities=23%  Similarity=0.332  Sum_probs=140.4

Q ss_pred             eecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhccc-cceEEEcccCCchhHHHHHHHhhh
Q psy4093          80 SVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDE  157 (434)
Q Consensus        80 SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~~-~d~vTvH~~~G~~ml~~a~~~~~~  157 (434)
                      .+.+-|...|...|...+....    +.++.+| |+|++|||||+..+++.+.++ +|++|||+++|.+||+++++++.+
T Consensus        35 ~~~Kvg~~lf~~~G~~~v~~L~----~~g~~iflDlK~~DI~nTv~~~~~~~~~~gad~vTvh~~~G~~~~~~a~~~~~~  110 (239)
T 3tr2_A           35 CHLKIGSILFTRYGPAFVEELM----QKGYRIFLDLKFYDIPQTVAGACRAVAELGVWMMNIHISGGRTMMETVVNALQS  110 (239)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHHH----HTTCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHHT
T ss_pred             cEEEeCHHHHHhhCHHHHHHHH----hcCCCEEEEecccccchHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHh
Confidence            3444444445444433332221    1234455 999999999999999988885 999999999999999999998865


Q ss_pred             hC-C-CCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccch
Q psy4093         158 LG-E-DRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSV  234 (434)
Q Consensus       158 ~~-~-~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~  234 (434)
                      .+ . ...+++|++|||   ++.+++.++|+....                   .+.|+++|+++++ |++|||||++|+
T Consensus       111 ~~~~~~~~l~~Vt~LTS---~~~~~l~~~g~~~~~-------------------~~~v~~~A~~a~~~g~~GvV~s~~e~  168 (239)
T 3tr2_A          111 ITLKEKPLLIGVTILTS---LDGSDLKTLGIQEKV-------------------PDIVCRMATLAKSAGLDGVVCSAQEA  168 (239)
T ss_dssp             CCCSSCCEEEEECSCTT---CCHHHHHHTTCCSCH-------------------HHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred             cCcCCCceEEEEEEEee---CCHHHHHhcCCCCCH-------------------HHHHHHHHHHHHHcCCCEEEECchhH
Confidence            42 1 123666777776   565666555554322                   3688889988887 899999999988


Q ss_pred             h----hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHH
Q psy4093         235 L----ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMW  300 (434)
Q Consensus       235 ~----~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~  300 (434)
                      .    .++++|++||||||++  +++.|||  ++||.+|+ ++|||+|||||||++|+||.+++++|++ +|
T Consensus       169 ~~ir~~~~~~fl~vtPGIr~~--g~~~~dQ~rv~t~~~~~-~aGad~lVvGr~I~~a~dp~~a~~~i~~-~i  236 (239)
T 3tr2_A          169 ALLRKQFDRNFLLVTPGIRLE--TDEKGDQKRVMTPRAAI-QAGSDYLVIGRPITQSTDPLKALEAIDK-DI  236 (239)
T ss_dssp             HHHHTTCCTTSEEEECCBC------------CCBCHHHHH-HHTCSEEEECHHHHTSSSHHHHHHHHHH-HC
T ss_pred             HHHHHhcCCCcEEECCCcCCC--CCCcCcccccCCHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHHHH-HH
Confidence            5    6788999999999998  8888999  57999999 9999999999999999999999999997 54

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*

Probab=100.00  E-value=8e-36  Score=290.11  Aligned_cols=192  Identities=22%  Similarity=0.316  Sum_probs=149.8

Q ss_pred             cceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHh
Q psy4093          78 FDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRIS  155 (434)
Q Consensus        78 y~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~  155 (434)
                      +-.+.+-|...|...|...+.....    .++.++ |+|++|||||++.+++.+.+ ++|++|||+++|.+||+++++++
T Consensus        52 ~v~~~KvG~~l~~~~G~~~v~~Lk~----~g~~VflDlK~~DIpnTv~~a~~~~~~~gaD~vTVh~~~G~~~~~~a~~~~  127 (255)
T 3ldv_A           52 STCRLKVGKEMFTLFGPDFVRELHK----RGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREIL  127 (255)
T ss_dssp             GGCEEEEEHHHHHHHHHHHHHHHHH----TTCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHH
T ss_pred             cCcEEEeCHHHHHhhCHHHHHHHHh----cCCCEEEEEecccchhHHHHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHH
Confidence            3445555666665555444433221    234455 99999999999999998887 79999999999999999999988


Q ss_pred             hhhCC-CCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccc
Q psy4093         156 DELGE-DRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPS  233 (434)
Q Consensus       156 ~~~~~-~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e  233 (434)
                      .+.+. ...++.|++|||   ++.+++.++|+....                   .+.|+++|+++.+ |++|||||++|
T Consensus       128 ~~~g~~~~~li~VtvLTS---~s~~~l~~~g~~~~~-------------------~~~V~~~A~~a~~aG~~GvV~sa~e  185 (255)
T 3ldv_A          128 EPYGKERPLLIGVTVLTS---MESADLQGIGILSAP-------------------QDHVLRLATLTKNAGLDGVVCSAQE  185 (255)
T ss_dssp             GGGGGGSCEEEEECSCTT---CCHHHHHHTTCCSCH-------------------HHHHHHHHHHHHHTTCSEEECCHHH
T ss_pred             hhcCCCCceEEEEEEEec---CCHHHHHhcCCCCCH-------------------HHHHHHHHHHHHHcCCCEEEECHHH
Confidence            65431 124566666665   565666665553321                   3578888888777 89999999998


Q ss_pred             hh----hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHH
Q psy4093         234 VL----ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEV  298 (434)
Q Consensus       234 ~~----~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~  298 (434)
                      +.    .++++|++||||||++  +++.|||  ++||.+|+ ++|||+|||||||++|+||.+++++|+++
T Consensus       186 ~~~iR~~~g~~fl~VtPGIr~q--g~~~~dQ~Rv~t~~~a~-~aGad~iVvGr~I~~a~dp~~a~~~i~~e  253 (255)
T 3ldv_A          186 ASLLKQHLGREFKLVTPGIRPA--GSEQGDQRRIMTPAQAI-ASGSDYLVIGRPITQAAHPEVVLEEINSS  253 (255)
T ss_dssp             HHHHHHHHCTTSEEEEECCCCT--TSTTSSCSSSCCHHHHH-HTTCSEEEECHHHHTCSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcEEEeCCcccC--cCCccceeccCCHHHHH-HcCCCEEEECHHHhCCCCHHHHHHHHHHh
Confidence            85    5789999999999998  7778888  68999999 99999999999999999999999999973

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=100.00  E-value=1.7e-34  Score=286.53  Aligned_cols=193  Identities=18%  Similarity=0.255  Sum_probs=143.8

Q ss_pred             ceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhh
Q psy4093          79 DSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISD  156 (434)
Q Consensus        79 ~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~  156 (434)
                      -.+.+-|...|...|...+.....   +.++.++ |+|++|||||+..+++.+++ |+|++|||+++|.+||+++++++.
T Consensus        50 v~~vKVG~~lf~~~G~~~V~~Lk~---~~g~~IflDlKl~DIpnTv~~av~~~a~lGaD~vTVHa~~G~~~m~aa~e~a~  126 (303)
T 3ru6_A           50 DIWLKVGLRAYLRDGFKFIEELKK---VDDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS  126 (303)
T ss_dssp             SCEEEECHHHHHHHTHHHHHHHHH---HCCCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHT
T ss_pred             ccEEEeCHHHHHHhCHHHHHHHHH---hhCCCEEEEeeeccCchhHHHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHH
Confidence            344555555565555444433211   1134455 99999999999999998888 799999999999999999999886


Q ss_pred             hhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccchh
Q psy4093         157 ELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSVL  235 (434)
Q Consensus       157 ~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~~  235 (434)
                      +.+....+++|++|||   ++.+++.++ +..                   ...+.|+++|+++.+ |++|||||++|+.
T Consensus       127 ~~~~~~~llaVtvLTS---~s~~~l~~l-~~~-------------------~~~e~V~~lA~~a~~~G~dGvV~s~~E~~  183 (303)
T 3ru6_A          127 KFSKRPLVLAVSALTS---FDEENFFSI-YRQ-------------------KIEEAVINFSKISYENGLDGMVCSVFESK  183 (303)
T ss_dssp             TSSSCCEEEEECSCTT---CCHHHHHHH-HSS-------------------CHHHHHHHHHHHHHHTTCSEEECCTTTHH
T ss_pred             hcCCCceEEEEEEecC---CCHHHHHHH-HcC-------------------CHHHHHHHHHHHHHHcCCCEEEECHHHHH
Confidence            5542124666778887   345555431 111                   123678888888777 8999999999885


Q ss_pred             ----hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         236 ----ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       236 ----~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                          .++++|++||||||++  |++.|||  ++||.+|+ ++|||+|||||+|++|+||.+++++|++ +|+
T Consensus       184 ~IR~~~~~~fl~VTPGIr~q--G~~~~DQ~Rv~t~~~a~-~aGAd~iVvGr~I~~a~dp~~a~~~i~~-~i~  251 (303)
T 3ru6_A          184 KIKEHTSSNFLTLTPGIRPF--GETNDDQKRVANLAMAR-ENLSDYIVVGRPIYKNENPRAVCEKILN-KIH  251 (303)
T ss_dssp             HHHHHSCTTSEEEECCCCTT--C--------CCSHHHHH-HTTCSEEEECHHHHTSSCHHHHHHHHHH-HHC
T ss_pred             HHHHhCCCccEEECCCcCcc--cCCcccccccCCHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHHHH-HHH
Confidence                6788999999999998  8888999  68999999 9999999999999999999999999997 554

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.2e-33  Score=267.97  Aligned_cols=182  Identities=21%  Similarity=0.248  Sum_probs=143.2

Q ss_pred             ccceecccchhhhccCCCccccccchhchhhhH-HHh-hhcccCHHHHHHHHHHHhccccceEEEcccCC-chhHHHHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLW-SII-ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAG-PGPLQEIQR  153 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~-si~-dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G-~~ml~~a~~  153 (434)
                      +|-.+.+-|...|...|...+......   .++ .+| |+|++|||||+..+++.+.++ |++|||+++| .+||+++++
T Consensus        24 ~~v~~~KvG~~l~~~~G~~~v~~L~~~---~~~~~VflDlK~~DI~nTv~~~~~~~~~~-d~vTVh~~~G~~~~~~~a~~   99 (222)
T 4dbe_A           24 NELYGIKVGLPLVLDLGVDKTRELLIG---LDVEEIIVDFKLADIGYIMKSIVERLSFA-NSFIAHSFIGVKGSLDELKR   99 (222)
T ss_dssp             GGCSEEEEEHHHHHHHCHHHHHHHHHT---CCCSEEEEEEEECSCHHHHHHHHTTCTTC-SEEEEESTTCTTTTHHHHHH
T ss_pred             CcCcEEEECHHHHHhhCHHHHHHHHHh---cCCCeEEEEeeecchHHHHHHHHHHHHhC-CEEEEEcCcCcHHHHHHHHH
Confidence            445666777777776675544333221   234 445 999999999999999988888 9999999999 999999999


Q ss_pred             HhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccc
Q psy4093         154 ISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS  233 (434)
Q Consensus       154 ~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e  233 (434)
                      ++.+.+  +++++||.||+++..+.+                              .+.++++|+.+  |++|+|||+.+
T Consensus       100 ~~~~~~--~~v~vLts~s~~~~~~~~------------------------------~~~~a~~a~~~--g~~GvV~sat~  145 (222)
T 4dbe_A          100 YLDANS--KNLYLVAVMSHEGWSTLF------------------------------ADYIKNVIREI--SPKGIVVGGTK  145 (222)
T ss_dssp             HHHHTT--CEEEEEEECSSTTCCCTT------------------------------HHHHHHHHHHH--CCSEEEECTTC
T ss_pred             HHHhcC--CcEEEEEeCCCcchHHHH------------------------------HHHHHHHHHHh--CCCEEEECCCC
Confidence            987655  678899999886544311                              12566677666  69999999744


Q ss_pred             ---hh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q psy4093         234 ---VL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQR  306 (434)
Q Consensus       234 ---~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~  306 (434)
                         +.    .+++ |++||||||++         +.||++|+ ++||||||||||||+|+||.+++++|++ +|+.+.++
T Consensus       146 p~e~~~ir~~~~~-~~~vtPGI~~~---------g~tp~~a~-~~Gad~iVVGR~I~~A~dP~~aa~~i~~-~i~~~~~~  213 (222)
T 4dbe_A          146 LDHITQYRRDFEK-MTIVSPGMGSQ---------GGSYGDAV-CAGADYEIIGRSIYNAGNPLTALRTINK-IIEDKVMK  213 (222)
T ss_dssp             HHHHHHHHHHCTT-CEEEECCBSTT---------SBCTTHHH-HHTCSEEEECHHHHTSSSHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHhCCC-CEEEcCCcccC---------ccCHHHHH-HcCCCEEEECHHhcCCCCHHHHHHHHHH-HHHHHHHH
Confidence               32    4555 99999999986         24899999 9999999999999999999999999998 88888887


Q ss_pred             Hh
Q psy4093         307 LK  308 (434)
Q Consensus       307 ~~  308 (434)
                      +.
T Consensus       214 ~~  215 (222)
T 4dbe_A          214 CK  215 (222)
T ss_dssp             C-
T ss_pred             hh
Confidence            75

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=99.97  E-value=1e-31  Score=255.36  Aligned_cols=178  Identities=20%  Similarity=0.205  Sum_probs=133.8

Q ss_pred             ccceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhccccceEEEcccCC-chhHHHHHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAG-PGPLQEIQRI  154 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G-~~ml~~a~~~  154 (434)
                      +|-.+.+-|...|...|...+....   +..++.+| |+|++|||||+..+++.+.+++|++|||+++| .+||+++ + 
T Consensus        22 ~~v~~~KvG~~l~~~~G~~~v~~L~---~~~g~~VflDlK~~DIpnTv~~a~~~~~~~ad~vTvh~~~G~~~~~~~~-~-   96 (215)
T 3ve9_A           22 GKVAGIKVGWPLLLNLGKEKVKELV---GLVDGIKILDLKLADIDNTMILIVDELKDITNSFIAHAFVGVEGSLASL-S-   96 (215)
T ss_dssp             TTSSEEEEEHHHHHHHCHHHHHHHH---TTCCSEEEEEEEECSCHHHHHHHHHHHTTTCSEEEEEGGGCTTTTHHHH-H-
T ss_pred             CcCcEEEecHHHHHhhCHHHHHHHH---HhcCCcEEEEecccCchhHHHHHHHHHHHhhheEEEeCCCCcHHHHHhH-h-
Confidence            4445666677777666654442221   11244556 99999999999999998888899999999999 9999998 2 


Q ss_pred             hhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccc-
Q psy4093         155 SDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS-  233 (434)
Q Consensus       155 ~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e-  233 (434)
                         .+  +++++||.|++++..  +   +                         .++.++++|+.+  |++|+|||+.+ 
T Consensus        97 ---~~--~~v~vLts~s~~~~~--~---~-------------------------~v~~~a~~a~~~--G~~GvV~sat~~  139 (215)
T 3ve9_A           97 ---QR--VDLFLVLSMSHPGWN--D---A-------------------------FYPYLREVARRV--NPKGFVAPATRP  139 (215)
T ss_dssp             ---HH--SEEEEECCCSSTTCC--G---G-------------------------GHHHHHHHHHHH--CCSEEECCTTSH
T ss_pred             ---cC--CCEEEEEecCCcchH--H---H-------------------------HHHHHHHHHHHc--CCCceeeCCCCH
Confidence               23  468888887775322  1   1                         134566666666  69999999744 


Q ss_pred             --hh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4093         234 --VL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL  307 (434)
Q Consensus       234 --~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~  307 (434)
                        +.    .+++ |++||||||++         +.||.+|+ ++|||+||||||||+|+||.+++++|++ +|+.+.+++
T Consensus       140 ~e~~~ir~~~~~-f~~v~pGI~~~---------g~~~~~a~-~~Gad~iVvGr~I~~a~dp~~a~~~i~~-~i~~~~~~~  207 (215)
T 3ve9_A          140 SMISRVKGDFPD-KLVISPGVGTQ---------GAKPGIAL-CHGADYEIVGRSVYQSADPVRKLEEIVR-SQEEVLSSC  207 (215)
T ss_dssp             HHHHHHHHHCTT-SEEEECCTTST---------TCCTTHHH-HTTCSEEEECHHHHTSSSHHHHHHHHHH-HHHHHC---
T ss_pred             HHHHHHHHhCCC-cEEEcCCCCcC---------cCCHHHHH-HcCCCEEEeCHHHcCCCCHHHHHHHHHH-HHHHHHHHh
Confidence              32    4566 99999999986         45899999 9999999999999999999999999998 888888776


Q ss_pred             h
Q psy4093         308 K  308 (434)
Q Consensus       308 ~  308 (434)
                      .
T Consensus       208 ~  208 (215)
T 3ve9_A          208 E  208 (215)
T ss_dssp             -
T ss_pred             h
Confidence            5

>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}

Probab=99.97  E-value=5.7e-31  Score=256.08  Aligned_cols=192  Identities=19%  Similarity=0.147  Sum_probs=139.6

Q ss_pred             ccceecccchhhhccCCCccccccchhch--hhhHHHh-hhcccCHHHHHHHHHHHhc-cc-cceEEEcccCCchhHHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHFVMAQ--NVLWSII-ILKLADIGAAVGHQFRLIG-EW-AHLVTVHSIAGPGPLQEI  151 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~igq--r~~~si~-dlKl~DI~nTv~~~~~~~~-~~-~d~vTvH~~~G~~ml~~a  151 (434)
                      ||-.+.+-+...|...|...+.....+-+  +.++.+| |+|++|||||+..+++.+. .+ +|++|||+++|.+||+++
T Consensus        43 ~~v~~~Kvg~~lf~~~G~~g~~~l~~l~~~~~~g~~VflDlK~~DI~nTv~~~a~~~~~~lg~d~vTvh~~~G~~~l~~~  122 (255)
T 3qw3_A           43 EYAAAYKPNAAFFEFFGAEGWAALSEVIRAVPAGIPVVLDAKRGDIADTADAYATSAFKHLNAHAITASPYMGSDSLQPF  122 (255)
T ss_dssp             GGCSEEEEBHHHHHTTTHHHHHHHHHHHHHSCTTCCBEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTCHHHHHHH
T ss_pred             CcCcEEEEcHHHHHhcCHHHHHHHHHHHHHhcCCCeEEEEeecCCcHHHHHHHHHHHHHHcCCCEEEEcccCCHHHHHHH
Confidence            45566777777787777432211111101  1334455 9999999999999998875 45 999999999999999999


Q ss_pred             HHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhh-cCC-CCceEEe
Q psy4093         152 QRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQS-FPG-LIAGLVC  229 (434)
Q Consensus       152 ~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~-a~~-gv~GvVc  229 (434)
                      ++..   +  +++++|+.||++++.+.+   ++|+...                  ...+.|+++|+. +.+ |++|+||
T Consensus       123 ~~~~---~--~gv~vL~~tS~~~~~~~q---~~~~~~~------------------~~~~~V~~~a~~~~~~~g~~GvV~  176 (255)
T 3qw3_A          123 MRYP---D--KAVFVLCKTSNKGSNDLQ---CLRVGDR------------------YLYEAVAERAEGPWNVNGNVGLVV  176 (255)
T ss_dssp             HTCT---T--SEEEEEEECCSGGGGTTT---TSEETTE------------------EHHHHHHHHHHTGGGGGSCEEEEE
T ss_pred             HHhh---C--CceEEEEeCCCccHHHHH---hcccCCC------------------CHHHHHHHHHHHHhhhhCCeEEEE
Confidence            9753   3  679999999986544322   2222110                  124789999999 766 8999999


Q ss_pred             Cc---cchh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCC----E--EEeCCcccCCCCHHHHHHHHH
Q psy4093         230 QA---PSVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGAD----L--GVVGRGITQAPDPVEAARRYK  296 (434)
Q Consensus       230 s~---~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD----~--IVVGR~It~A~DP~~aa~~i~  296 (434)
                      |+   +|+.    .+++.| ++|||||++         +.||++|+ ++|+|    +  ||||||||+|+||.+++++|+
T Consensus       177 ~at~~~e~~~ir~~~~~~~-~l~PGIg~q---------g~tp~~a~-~~G~d~~~~~~livvGR~I~~A~dp~~aa~~i~  245 (255)
T 3qw3_A          177 GATDPVALARVRARAPTLW-FLVPGIGAQ---------GGSLKASL-DAGLRADGSGMLINVSRGLARAADPRAAAKELC  245 (255)
T ss_dssp             CSSCHHHHHHHHHHCSSCC-EEECCC--------------CHHHHH-HHHCCTTSCCEEEEESHHHHTSSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCe-EEECCcCCC---------CCCHHHHH-HcCCCcccCeeEEEeChhhcCCCCHHHHHHHHH
Confidence            95   4664    456665 689999986         45999999 89999    4  999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy4093         297 EVMWEAYEQR  306 (434)
Q Consensus       297 ~~~~~a~~~~  306 (434)
                      + +|++++++
T Consensus       246 ~-~i~~~~~~  254 (255)
T 3qw3_A          246 E-EINAIRFA  254 (255)
T ss_dssp             H-HHHHHHHC
T ss_pred             H-HHHHHHhc
Confidence            8 88887753

>3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum, 5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE NUP; 1.47A {Plasmodium falciparum} SCOP: c.1.2.3 PDB: 2qaf_A* 3bar_A* 2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A 3vi2_A*

Probab=99.96  E-value=2.9e-30  Score=259.56  Aligned_cols=204  Identities=18%  Similarity=0.164  Sum_probs=144.6

Q ss_pred             cccceecccchhhhccCCCccccccc---hhchhhhHHHh-hhcccCHHHHHHHHHHHh-ccc-cceEEEcccCCchhHH
Q psy4093          76 YDFDSVMHYSRKAFSKNGDDTIVPHF---VMAQNVLWSII-ILKLADIGAAVGHQFRLI-GEW-AHLVTVHSIAGPGPLQ  149 (434)
Q Consensus        76 YDy~SVMhYg~~aFs~~g~~Ti~~~~---~igqr~~~si~-dlKl~DI~nTv~~~~~~~-~~~-~d~vTvH~~~G~~ml~  149 (434)
                      .||-.+.+-|...|...|...+....   ..-+..++.+| |+|++|||||+..+++.+ ..+ +|++|||+++|.+||+
T Consensus       114 ~~~v~~vKvG~~lf~~~G~~gv~~l~~l~~~l~~~g~~VflDlK~~DIpnTv~~ya~~~~~~lgaD~vTVh~~~G~~~l~  193 (342)
T 3n3m_A          114 NKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLK  193 (342)
T ss_dssp             GGGCSEEEEEGGGTSTTTHHHHHHHHHHHHHHHHHTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTCSGGGG
T ss_pred             cCcCcEEEecHHHHHhcCHHHHHHHHHHHHHHHhCCCeEEEEeecCCcHHHHHHHHHHHHHhcCCCEEEEcccCCHHHHH
Confidence            35667777777777776644331111   11112344555 999999999999998876 554 9999999999999999


Q ss_pred             HH-HHHhhhhCCCCceEEEEEeCCCCCCChHHHHh-hcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHh---hcCC-C
Q psy4093         150 EI-QRISDELGEDRGVFLIAQLSCQGNLIDEKYTQ-VGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQ---SFPG-L  223 (434)
Q Consensus       150 ~a-~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~---~a~~-g  223 (434)
                      ++ ++++.+.+  +++|+||+|||+++   .++++ .|....+.              .....+.+.++|+   .+.+ |
T Consensus       194 ~a~~~~~~~~~--~~v~vvt~tSs~~~---~dlq~~~~~~~~~l--------------y~~V~~~a~~~a~~~~~a~~~G  254 (342)
T 3n3m_A          194 DICYDEEKNKY--YSAFVLVKTTNPDS---AIFQKNLSLDNKQA--------------YVIMAQEALNMSSYLNLEQNNE  254 (342)
T ss_dssp             GTSEETTTTEE--CEEEEEEECCSTTT---HHHHTTCEETTEEH--------------HHHHHHHHHHHHHHTTTGGGTC
T ss_pred             HHHHHHHhhcC--CcEEEEEeCCCCCH---HHHHHHhccCCChH--------------HHHHHHHHHHHHHhcccccccC
Confidence            97 46554434  58999999999743   34432 22222110              0001245566663   2333 7


Q ss_pred             CceEEe---Cccchh---hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093         224 IAGLVC---QAPSVL---ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRY  295 (434)
Q Consensus       224 v~GvVc---s~~e~~---~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i  295 (434)
                      ++||||   |+.|+.   ...|+|++|||||+.+     .|||  ++||.+|+ +.|+|+||||||||+|+||.+++++|
T Consensus       255 ~~GvV~GATsp~e~~~iR~~~p~~~iLtPGIGAQ-----ggDq~rv~tp~~a~-~~g~~~ivVGR~I~~A~dP~~Aa~~i  328 (342)
T 3n3m_A          255 FIGFVVGANSYDEMNYIRTYFPNCYILSPGIGAQ-----NGDLHKTLTNGYHK-SYEKILINIGRAITKNPYPQKAAQMY  328 (342)
T ss_dssp             CEEEEECTTCHHHHHHHHHHSTTCCEEECCSSTT-----CCCHHHHHHHHCCS-SGGGEEEEECHHHHTSSCHHHHHHHH
T ss_pred             CceEEECCCCHHHHHHHHHhCCCCeEEeCCCCcC-----CCCHHHHHhhhhhh-hcCceEEEcChhhhcCCCHHHHHHHH
Confidence            999999   777774   3336899999999754     3566  67999999 89999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy4093         296 KEVMWEAYEQ  305 (434)
Q Consensus       296 ~~~~~~a~~~  305 (434)
                      ++ +|+++++
T Consensus       329 ~~-ei~~~l~  337 (342)
T 3n3m_A          329 YD-QINAILK  337 (342)
T ss_dssp             HH-HHHHHHH
T ss_pred             HH-HHHHHHH
Confidence            98 7777654

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=99.95  E-value=1.9e-29  Score=241.53  Aligned_cols=181  Identities=22%  Similarity=0.272  Sum_probs=130.9

Q ss_pred             ccceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRI  154 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~  154 (434)
                      ++-.+.|.+...|-..|...+.....   ..++.++ |+|++|||||+..+++.+.+ ++|++|||+.+|.+||+++++.
T Consensus        36 ~~v~~~Kvg~~lf~~~G~~~v~~l~~---~~g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~~~G~~~l~~~~~~  112 (228)
T 3m47_A           36 EYIDTVKIGYPLVLSEGMDIIAEFRK---RFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNV  112 (228)
T ss_dssp             TTCSEEEEEHHHHHHHCTHHHHHHHH---HHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHH
T ss_pred             CcccEEEEcHHHHHhcCHHHHHHHHh---cCCCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHH
Confidence            34567788888886667665543322   0223345 99999999999999997777 6999999999999999999999


Q ss_pred             hhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccc-
Q psy4093         155 SDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS-  233 (434)
Q Consensus       155 ~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e-  233 (434)
                      +++.+  +++++|+.||+++..+.  +..                         .++.++++|+++  |++|+|||+.+ 
T Consensus       113 ~~~~g--~~v~vLt~~s~~~~~~~--~~~-------------------------~~~~~a~~a~~~--G~~GvV~~at~~  161 (228)
T 3m47_A          113 AEEMG--REVFLLTEMSHPGAEMF--IQG-------------------------AADEIARMGVDL--GVKNYVGPSTRP  161 (228)
T ss_dssp             HHHHT--CEEEEECCCCSGGGGTT--HHH-------------------------HHHHHHHHHHHT--TCCEEECCSSCH
T ss_pred             HHhcC--CCeEEEEeCCCccHHHH--HHH-------------------------HHHHHHHHHHHh--CCcEEEECCCCh
Confidence            87766  57888888888643321  111                         134667777666  69999999643 


Q ss_pred             --hh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093         234 --VL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY  303 (434)
Q Consensus       234 --~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~  303 (434)
                        +.    .++++|++||||||++         +.|| +++ ++|||++||||+|++|+||.++++++++ +|+..
T Consensus       162 ~e~~~ir~~~~~~~~iv~PGI~~~---------g~~p-~~~-~aGad~iVvGr~I~~a~dp~~a~~~~~~-~~~~~  225 (228)
T 3m47_A          162 ERLSRLREIIGQDSFLISPGVGAQ---------GGDP-GET-LRFADAIIVGRSIYLADNPAAAAAGAIE-SIKDL  225 (228)
T ss_dssp             HHHHHHHHHHCSSSEEEECC-------------------CG-GGTCSEEEECHHHHTSSCHHHHHHHHHH-HC---
T ss_pred             HHHHHHHHhcCCCCEEEecCcCcC---------CCCH-hHH-HcCCCEEEECHHHhCCCCHHHHHHHHHH-HHHHH
Confidence              32    4677799999999986         3479 999 9999999999999999999999999997 66543

>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}

Probab=99.95  E-value=2.9e-28  Score=254.34  Aligned_cols=192  Identities=19%  Similarity=0.155  Sum_probs=144.1

Q ss_pred             ccceecccchhhhccCCCccccccch--hchhhhHHHh-hhcccCHHHHHHHHHHHhcc--ccceEEEcccCCchhHHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHFV--MAQNVLWSII-ILKLADIGAAVGHQFRLIGE--WAHLVTVHSIAGPGPLQEI  151 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~--igqr~~~si~-dlKl~DI~nTv~~~~~~~~~--~~d~vTvH~~~G~~ml~~a  151 (434)
                      |+-...+-|...|...|...+.....  -+-+.++.++ |+|+||||||+..+++.+..  ++|++|||+++|.+||+++
T Consensus        44 ~~v~~~Kvg~~lf~~~G~~~v~~L~~~~~~~~~g~~VflDlK~~DIpnT~~~~a~~~~~~lg~d~vTvh~~~G~~~l~~~  123 (453)
T 3qw4_B           44 EYAAAYKPNAAFFEFFGAEGWAALSEVIRAVPAGIPVVLDAKRGDIADTADAYATSAFKHLNAHAITASPYMGSDSLQPF  123 (453)
T ss_dssp             GGCSEEEEBHHHHHTTHHHHHHHHHHHHHTSCTTSCBEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECSTTCHHHHHHH
T ss_pred             CcCcEEEEcHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEeecCChHHHHHHHHHHHHHHcCCCEEEEcccCCHHHHHHH
Confidence            44566666777777666443322211  0111234445 99999999999999987554  5999999999999999999


Q ss_pred             HHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHh-hcCC-CCceEEe
Q psy4093         152 QRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQ-SFPG-LIAGLVC  229 (434)
Q Consensus       152 ~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~-~a~~-gv~GvVc  229 (434)
                      ++..   +  +++++|+.||++++-   ++.++|+...                  ..++.|+++|+ .+.+ |++|+||
T Consensus       124 ~~~~---~--~~v~vL~~tS~~~~~---~lq~~~~~~~------------------~~~~~V~~~a~~~~~~~g~~GvV~  177 (453)
T 3qw4_B          124 MRYP---D--KAVFVLCKTSNKGSN---DLQCLRVGDR------------------YLYEAVAERAEGPWNVNGNVGLVV  177 (453)
T ss_dssp             HTCT---T--SEEEEEEECSSGGGG---GTTTSEETTE------------------EHHHHHHHHHTTTTCTTSCEEEEE
T ss_pred             HHhh---C--CcEEEEEeCCCcchH---HHHhcccCCC------------------CHHHHHHHHHHHHHhhcCCeEEEE
Confidence            8754   3  578999988886432   2323232210                  12579999999 8877 8999999


Q ss_pred             Cc---cchh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCE------EEeCCcccCCCCHHHHHHHHH
Q psy4093         230 QA---PSVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADL------GVVGRGITQAPDPVEAARRYK  296 (434)
Q Consensus       230 s~---~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~------IVVGR~It~A~DP~~aa~~i~  296 (434)
                      |+   +|+.    .+++.| ++|||||++         +.||++|+ ++|+|+      ||||||||+|+||.+++++|+
T Consensus       178 gat~~~e~~~ir~~~~~~~-~l~PGig~q---------g~tp~~a~-~~g~d~~~~~~livvgR~I~~A~dp~~aa~~i~  246 (453)
T 3qw4_B          178 GATDPVALARVRARAPTLW-FLVPGIGAQ---------GGSLKASL-DAGLRADGSGMLINVSRGLARAADPRAAAKELC  246 (453)
T ss_dssp             CTTCHHHHHHHHHHCSSCC-EEECCSSTT---------CCCHHHHH-HHHCCTTSCCEEEEESHHHHSCSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhCCCCe-EEECCcCCC---------CCCHHHHH-HhcCCcccCCceEecChhhccCCCHHHHHHHHH
Confidence            84   6664    566676 689999986         45999999 999998      999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy4093         297 EVMWEAYEQR  306 (434)
Q Consensus       297 ~~~~~a~~~~  306 (434)
                      + +|++.+++
T Consensus       247 ~-~i~~~r~~  255 (453)
T 3qw4_B          247 E-EINAIRFA  255 (453)
T ss_dssp             H-HHHHHHSC
T ss_pred             H-HHHHHHhc
Confidence            8 88888766

>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A*

Probab=99.95  E-value=1.4e-28  Score=240.61  Aligned_cols=106  Identities=36%  Similarity=0.580  Sum_probs=101.0

Q ss_pred             cccChhhhhhhccchhhHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHH-HHHHHHHHH
Q psy4093         314 IVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEE-VQKELTALA  392 (434)
Q Consensus       314 ~~~~~~~r~~~~~~~~~~~l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~-~v~~L~~la  392 (434)
                      ++++|++|+++++||+++||+++|++|+++||||||+++.+++++|+++++|++|++|+|++||.++|++ +++.|++++
T Consensus         2 ~~~~~~~r~~~~~~~~~~~l~~~m~~k~~~LiVALD~~~~~~al~l~~~l~~~v~~~KvG~~l~~~~G~~~~v~~L~~l~   81 (267)
T 3gdm_A            2 SKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALS   81 (267)
T ss_dssp             -CCCHHHHHHHCSCHHHHHHHHHHHHHTCCEEEECCCSCHHHHHHHHHHHGGGCSEEEECGGGCSSCCTTTTHHHHHHHH
T ss_pred             CcCCHHHHHhccCChHHHHHHHHHHhhCCCEEEEeCcCCHHHHHHHHHHhCCcCcEEEECHHHHHhcCHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999 999999998


Q ss_pred             hcCCCeeeecCCCCcchhHHHHHhhcC
Q psy4093         393 KQHEFLRSRNGWFSPILSSFSLRFRDD  419 (434)
Q Consensus       393 ~k~gf~iFlDlKf~DIpnTV~~a~~~~  419 (434)
                      +++||+||+|+|||||||||+++|+.+
T Consensus        82 ~~~g~~IflDlK~~DIpnTv~~~y~~a  108 (267)
T 3gdm_A           82 AKYNFLLFEDRRFADIGNTVKLQYSAG  108 (267)
T ss_dssp             HHHTCEEEEEEEECCCHHHHHHHHHST
T ss_pred             hhcCCeEEEEeccccchHHHHHHHHHH
Confidence            889999999999999999999987544

>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ...

Probab=99.95  E-value=4.3e-28  Score=236.28  Aligned_cols=104  Identities=40%  Similarity=0.613  Sum_probs=100.7

Q ss_pred             cccChhhhhhhcc-chhhHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHH
Q psy4093         314 IVTPFETRKADVK-CRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALA  392 (434)
Q Consensus       314 ~~~~~~~r~~~~~-~~~~~~l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la  392 (434)
                      .+++|++|++++. ||+++||+++|++|+++||||||+++.+++++|+++++|++|++|+|++||.++|++++++|++++
T Consensus         3 ~~~~~~~r~~~~~~~~~~~~l~~~~~~k~~~LiVALD~~~~~~al~l~~~l~~~v~~~KvG~~l~~~~G~~~v~~L~~~a   82 (260)
T 3eww_A            3 MELSFGARAELPRIHPVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLA   82 (260)
T ss_dssp             CCCCHHHHTTCTTCCHHHHHHHHHHHHHTCCEEEECCCSCHHHHHHHHHHHGGGCSEEEECGGGCTTCCHHHHHHHHHHH
T ss_pred             cccCHHHHHhcCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHhCCCceEEEEcHHHHHHhCHHHHHHHHHHH
Confidence            3689999999999 999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcCCCeeeecCCCCcchhHHHHHhh
Q psy4093         393 KQHEFLRSRNGWFSPILSSFSLRFR  417 (434)
Q Consensus       393 ~k~gf~iFlDlKf~DIpnTV~~a~~  417 (434)
                      +++||+||+|+|||||||||+++++
T Consensus        83 ~~~g~~VflDlK~~DIpnTv~~a~~  107 (260)
T 3eww_A           83 KCHEFLIFENRKFADIGNTVKKQYE  107 (260)
T ss_dssp             HHHTCEEEEEEEECSCHHHHHHHHH
T ss_pred             hhcCCeEEEEeeccccHHHHHHHHH
Confidence            8899999999999999999999886

>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*

Probab=99.94  E-value=5.8e-28  Score=240.28  Aligned_cols=105  Identities=39%  Similarity=0.585  Sum_probs=100.7

Q ss_pred             ccccChhhhhhhcc-chhhHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHH
Q psy4093         313 RIVTPFETRKADVK-CRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTAL  391 (434)
Q Consensus       313 ~~~~~~~~r~~~~~-~~~~~~l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~l  391 (434)
                      +.+++|++|++++. ||+++||+++|++|+++||||||+++.+++++|+++++|++|++|+|++||.++|++++++|+++
T Consensus        54 ~~~~~~~~r~~~~~~~p~~~~L~~~m~~k~~~LiVALD~~~~~~al~l~~~l~~~v~~vKvG~~l~~~~G~~~v~~L~~~  133 (312)
T 3g3d_A           54 PKELSFGARAELPRIHPVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITL  133 (312)
T ss_dssp             --CCCHHHHTTCTTCCHHHHHHHHHHHHHTCCEEEECCCSCHHHHHHHHHHHGGGCSEEEECGGGCTTCCHHHHHHHHHH
T ss_pred             cccCCHHHHHhcCCCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHhCCCceEEEEcHHHHHHhCHHHHHHHHHH
Confidence            56799999999999 99999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093         392 AKQHEFLRSRNGWFSPILSSFSLRFR  417 (434)
Q Consensus       392 a~k~gf~iFlDlKf~DIpnTV~~a~~  417 (434)
                      ++++||+||+|+|||||||||+++++
T Consensus       134 a~~~g~~IflDlK~~DIpnTv~~a~~  159 (312)
T 3g3d_A          134 AKCHEFLIFEDRKFADIGNTVKKQYE  159 (312)
T ss_dssp             HHHHTCEEEEEEEECSCHHHHHHHHH
T ss_pred             HhhCCCEEEEECcccccHHHHHHHHH
Confidence            88899999999999999999999886

>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A

Probab=99.94  E-value=2e-28  Score=247.37  Aligned_cols=206  Identities=17%  Similarity=0.174  Sum_probs=140.0

Q ss_pred             ccceecccchhhhccCCCccccccch---hchhhhHHHh-hhcccCHHHHHHHHHHHhcc-c-cceEEEcccCCchhHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHFV---MAQNVLWSII-ILKLADIGAAVGHQFRLIGE-W-AHLVTVHSIAGPGPLQE  150 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~---igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~-~d~vTvH~~~G~~ml~~  150 (434)
                      ||-.+.+-+...|...|...+.....   .-+..++.++ |+|++|||||+..+++.+.+ + +|++|||+++|.+||++
T Consensus       117 ~~v~~vKvg~~lf~~~G~~gv~~L~~~i~~lk~~g~~VflDlK~~DIgnTv~~ya~a~~~~lgaD~vTVh~~~G~~sl~~  196 (352)
T 2fds_A          117 EYALIYKMNFAFYIPYGSVGINALKNVFDYLNSMNIPTMLDMKINDIGNTVKNYRKFIFEYLKSDSCTINVYMGTSMLKD  196 (352)
T ss_dssp             GGCSEEEEEGGGTGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTCSTTHHH
T ss_pred             cccCEEEecHHHHHhCCHHHHHHHHHHHHHHHHCCCeEEEEeecCchHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHHHH
Confidence            44455566666666666444321110   0112244455 99999999999999887766 5 99999999999999999


Q ss_pred             HHH-HhhhhCCCCceEEEEEeCCCCCCChHHHHh-hcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcC----CCC
Q psy4093         151 IQR-ISDELGEDRGVFLIAQLSCQGNLIDEKYTQ-VGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFP----GLI  224 (434)
Q Consensus       151 a~~-~~~~~~~~~~v~~v~~lss~~sl~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~----~gv  224 (434)
                      +++ ...+.+  +++++|++|||+++   .++.+ .+....+  +.+            ...+.+.++|+.+.    .+.
T Consensus       197 a~~~~a~~~g--kgv~lLa~TSn~~~---~dlq~~~~~~g~~--l~~------------~v~~~v~~la~~~G~d~~~~~  257 (352)
T 2fds_A          197 ICFDYEKNKY--YSAYVLIKTTNKDS---FIFQNELSINDKQ--AYI------------VMAEETQKMATDLKIDQNNEF  257 (352)
T ss_dssp             HSEETTTTEE--CEEEEEEECSSGGG---HHHHTTCEETTEE--HHH------------HHHHHHHHHHHHHTTGGGTCC
T ss_pred             HHHHHhhccC--CceEEEEEeCCcCH---HHHHHhhccCCCc--HHH------------HHHHHHHHHHHHhCCCccCCc
Confidence            975 433334  57999999988643   33432 0111110  000            01234556666541    123


Q ss_pred             ceEEe---Cccchh---hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093         225 AGLVC---QAPSVL---ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYK  296 (434)
Q Consensus       225 ~GvVc---s~~e~~---~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~  296 (434)
                      .|+||   ++.|+.   ...++|++|||||+.+     .|||  ++||.+|+ +.|+|+||||||||+|+||++++++|+
T Consensus       258 ~GvVvGaTs~~e~~~iR~~~~~~~iLtPGIGaq-----gGdq~rv~tp~~a~-~~gadiIvVGR~I~~A~dp~~Aa~~i~  331 (352)
T 2fds_A          258 IGFVVGSNAFEEMKIIRNKFPDSYILSPGIGAQ-----NGDLYKTLKNGYNK-DYEKLLINVGRAITKSPNPKKSSESYY  331 (352)
T ss_dssp             EEEEECTTCHHHHHHHHHHSTTCCEEECCC----------CHHHHHHHHCCS-SGGGEEEEECHHHHTSSCHHHHHHHHH
T ss_pred             ceEEEcCCCHHHHHHHHHhCCCCEEEcCccccc-----cCcHHHhhCHHhHh-hcCceEEEECHHHccCCCHHHHHHHHH
Confidence            59999   666653   3348999999999654     4566  57999999 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy4093         297 EVMWEAYEQRLK  308 (434)
Q Consensus       297 ~~~~~a~~~~~~  308 (434)
                      + +|+++++++.
T Consensus       332 ~-ei~~~l~~~~  342 (352)
T 2fds_A          332 N-QIIQIFKDIE  342 (352)
T ss_dssp             H-HHHHHHHHHC
T ss_pred             H-HHHHHHHHHh
Confidence            8 5789999976

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=99.94  E-value=3.2e-27  Score=223.91  Aligned_cols=167  Identities=22%  Similarity=0.225  Sum_probs=121.5

Q ss_pred             eecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhccc-cceEEEcccCCchhHHHHHHHhhh
Q psy4093          80 SVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDE  157 (434)
Q Consensus        80 SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~~-~d~vTvH~~~G~~ml~~a~~~~~~  157 (434)
                      .+.+-|...|. .|...+.....    .++.++ |+|++|||||+..+++.+.++ +|++|||+++|.+||+++.+.+. 
T Consensus        35 ~~~Kvg~~l~~-~G~~~v~~l~~----~~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~vTvh~~~G~~~l~~~~~~~~-  108 (213)
T 1vqt_A           35 EVVKVGHNLAI-HGKKIFDELAK----RNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCAGYESVERALSATD-  108 (213)
T ss_dssp             SEEEECHHHHT-TCTHHHHHHHT----TTCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGGCHHHHHHHHHHCS-
T ss_pred             CEEEECHHHHh-hCHHHHHHHHH----CCCCEEEEeecccCchHHHHHHHHHHHCCCCEEEEeccCCHHHHHHHHHhcC-
Confidence            34666677777 77655544322    234455 999999999999999988885 99999999999999999988763 


Q ss_pred             hCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccchh-
Q psy4093         158 LGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSVL-  235 (434)
Q Consensus       158 ~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~~-  235 (434)
                          ...+.|++|||.   ... +.+                            .+.++|+. .+ |++ +||++.++. 
T Consensus       109 ----~~~~~V~~lts~---~~~-l~~----------------------------~v~~~a~~-~e~G~d-vV~~~~~~~~  150 (213)
T 1vqt_A          109 ----KHVFVVVKLTSM---EGS-LED----------------------------YMDRIEKL-NKLGCD-FVLPGPWAKA  150 (213)
T ss_dssp             ----SEEEEECCCTTS---CCC-HHH----------------------------HHHHHHHH-HHHTCE-EECCHHHHHH
T ss_pred             ----CCeEEEEEeCCC---CHH-HHH----------------------------HHHHHHHH-hcCCCE-EEEcHHHHHH
Confidence                235667777662   222 211                            34444555 44 788 999997764 


Q ss_pred             ---hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         236 ---ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       236 ---~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                         .++++  +||||||++  +.+ +||  ++||++ + ++|||+|||||+||+|+||.+++++|++
T Consensus       151 ir~~~~~~--~v~pGI~~~--~~~-~dq~rv~t~~~-i-~aGad~iVvGR~I~~a~dP~~aa~~i~~  210 (213)
T 1vqt_A          151 LREKIKGK--ILVPGIRME--VKA-DDQKDVVTLEE-M-KGIANFAVLGREIYLSENPREKIKRIKE  210 (213)
T ss_dssp             HTTTCCSC--EEECCBC------------CCBCHHH-H-TTTCSEEEESHHHHTSSCHHHHHHHHTC
T ss_pred             HHHHCCCC--EEECCCCCC--CCc-cchhhcCCHHH-H-HCCCCEEEEChhhcCCCCHHHHHHHHHH
Confidence               34443  999999998  554 677  689999 9 9999999999999999999999999987

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=99.93  E-value=3.4e-26  Score=219.78  Aligned_cols=162  Identities=27%  Similarity=0.414  Sum_probs=129.3

Q ss_pred             hhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhh---CCCCc---eEEEEEeCCCCCCChHHH-Hh
Q psy4093         112 IILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDEL---GEDRG---VFLIAQLSCQGNLIDEKY-TQ  183 (434)
Q Consensus       112 ~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~---~~~~~---v~~v~~lss~~sl~~~~~-~~  183 (434)
                      +|+|++|||+|+..+++.+.+ ++|++|||+.+|.+|++++++..++.   |  .+   ++.|+.+||   ...+.+ .+
T Consensus        59 lD~kl~Dip~t~~~~~~~~~~~Gad~vtvH~~~g~~~l~~~~~~~~~~~~~g--~~~~~~~~V~~~ts---~~~~~l~~~  133 (239)
T 1dbt_A           59 LDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAG--KKRPSLIAVTQLTS---TSEQIMKDE  133 (239)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTT--SCCCEEEEECSCTT---CCHHHHHHT
T ss_pred             EEeccccchHHHHHHHHHHHhcCCCEEEEeCcCCHHHHHHHHHHHHhhhccC--CCCccEEEEEEcCC---CCHHHHHHH
Confidence            499999999999999887777 59999999999999999998888766   5  33   466667766   233444 33


Q ss_pred             hcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccchh----hcCCCceEecCcccccCCCCCCC
Q psy4093         184 VGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSVL----ASNPGLLQLTPGIHLNQTGDNKG  258 (434)
Q Consensus       184 ~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~~----~~~~~~l~vtPGIr~~~~~~~~~  258 (434)
                      +|+..                   ...+.|+.+|..+.+ |.+||||++.++.    .+++.++.|+|||+++  +.+.|
T Consensus       134 ~~~~~-------------------~~~d~Vl~ma~~~~~~G~~g~v~~~~~i~~lr~~~~~~~i~v~gGI~~~--~~~~~  192 (239)
T 1dbt_A          134 LLIEK-------------------SLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRMS--EDAAN  192 (239)
T ss_dssp             SCBCS-------------------CHHHHHHHHHHHHHHTTCSEEECCGGGHHHHTTTSCTTCEEEECCBCCT--TSCCT
T ss_pred             hccCC-------------------CHHHHHHHHHHHHHHhCCCEEEECHHHHHHHHHhcCCCcEEEeCCcCCC--CCCcc
Confidence            22110                   124678889887665 7999999997664    4556788999999998  77777


Q ss_pred             Cc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         259 QQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       259 dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                      ||  ++||.+|+ ++|||++||||+|++|+||.+++++|++ .|+
T Consensus       193 dq~rv~tp~~a~-~aGad~iVvGr~I~~a~dp~~a~~~l~~-~i~  235 (239)
T 1dbt_A          193 DQVRVATPAIAR-EKGSSAIVVGRSITKAEDPVKAYKAVRL-EWE  235 (239)
T ss_dssp             TCSSCBCHHHHH-HTTCSEEEECHHHHTSSCHHHHHHHHHH-HHH
T ss_pred             ceeccCCHHHHH-HcCCCEEEEChhhcCCCCHHHHHHHHHH-HHH
Confidence            88  68999999 9999999999999999999999999987 554

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=99.93  E-value=6.7e-26  Score=218.67  Aligned_cols=161  Identities=22%  Similarity=0.351  Sum_probs=129.1

Q ss_pred             hhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhhCC-CCceEEEEEeCCCCCCChHHHHhhcchhh
Q psy4093         112 IILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGE-DRGVFLIAQLSCQGNLIDEKYTQVGFKAI  189 (434)
Q Consensus       112 ~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~~~-~~~v~~v~~lss~~sl~~~~~~~~g~~~~  189 (434)
                      +|+|++|||+|+..+++.+.+ ++|++|||+.+|.+|++++++..++.|. ..++++|+.+|+   ...+++.++|+.. 
T Consensus        70 lD~kl~Dip~t~~~~i~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~G~~~~~~l~v~~~ts---~~~~~l~~~~~~~-  145 (245)
T 1eix_A           70 LDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTS---MEASDLVDLGMTL-  145 (245)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSCTT---CCHHHHHTTTCCS-
T ss_pred             EEeeccccHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCCCcEEEEEecCC---CCHHHHHHhccCC-
Confidence            499999999999998887777 5999999999999999999998876652 113556666676   2344554422211 


Q ss_pred             HHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccchh----hcCCCceEecCcccccCCCCCCCCcc--C
Q psy4093         190 TLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSVL----ASNPGLLQLTPGIHLNQTGDNKGQQY--N  262 (434)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~--~  262 (434)
                                        ...+.|+.++..+.+ |.+||||++.|+.    .+++.++.|+|||+++  |++.+||.  .
T Consensus       146 ------------------~~~d~Vl~ma~~~~~~G~~g~V~~~~ei~~lr~~~~~~~i~v~gGI~~~--g~~~~dq~rv~  205 (245)
T 1eix_A          146 ------------------SPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQ--GSEAGDQRRIM  205 (245)
T ss_dssp             ------------------CHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHCSSSEEEECCBCCT--TCCCTTCCSCB
T ss_pred             ------------------CHHHHHHHHHHHHHHcCCCeEEeCHHHHHHHHHhcCCCCEEEECCcCCC--CCCccchhccC
Confidence                              123678888876655 7999999998864    4566789999999998  88888995  5


Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      ||++|+ ++|||++||||+|++++||.+++++|++
T Consensus       206 t~~~a~-~aGad~iVvGr~I~~a~dp~~a~~~l~~  239 (245)
T 1eix_A          206 TPEQAL-SAGVDYMVIGRPVTQSVDPAQTLKAINA  239 (245)
T ss_dssp             CHHHHH-HTTCSEEEECHHHHTSSSHHHHHHHHHH
T ss_pred             CHHHHH-HcCCCEEEECHHHcCCCCHHHHHHHHHH
Confidence            999999 9999999999999999999999999986

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=99.93  E-value=4.9e-26  Score=219.64  Aligned_cols=165  Identities=25%  Similarity=0.362  Sum_probs=124.4

Q ss_pred             hhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhh---hCCCC-ceEEEEEeCCCCCCChHHH-Hhhc
Q psy4093         112 IILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDE---LGEDR-GVFLIAQLSCQGNLIDEKY-TQVG  185 (434)
Q Consensus       112 ~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~---~~~~~-~v~~v~~lss~~sl~~~~~-~~~g  185 (434)
                      +|+|++|||+|+..+++.+.+ ++|++|||+.+|.+|++++++..++   .|... .+++|+.+||   ...+++ .++|
T Consensus        60 lD~kl~Dip~t~~~~~~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~~~~G~~~~~~lav~~~Ts---~~~~~l~~~~~  136 (246)
T 2yyu_A           60 LDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTS---TDERMLHEELW  136 (246)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHHHHSCSSSCCCEEEEESSCTT---CCHHHHHHTSC
T ss_pred             EEeecccchHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHhhcccCCcCCCEEEEEeCCC---CCHHHHHHHhc
Confidence            499999999999998887777 5999999999999999999888766   34111 2455666665   334555 4433


Q ss_pred             chhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccchh----hcCCCceEecCcccccCCCCCCCCc
Q psy4093         186 FKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSVL----ASNPGLLQLTPGIHLNQTGDNKGQQ  260 (434)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ  260 (434)
                      +..                   ...+.|+.++..+.+ |.+||||++.|+.    .+++.|+.|+|||+++  +++.+||
T Consensus       137 ~~~-------------------~~~d~Vl~ma~~~~~~G~~g~V~~~~ei~~lr~~~~~~~i~V~gGI~~~--g~~~~dq  195 (246)
T 2yyu_A          137 ISR-------------------PLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGASFLAVTPGIRFA--DDAAHDQ  195 (246)
T ss_dssp             CCS-------------------CHHHHHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCTTSEEEECCCCCC--C------
T ss_pred             CCC-------------------CHHHHHHHHHHHHHHhCCCEEEeCHHHHHHHHHhcCCCCEEEeCCcCCC--CCCcccc
Confidence            211                   123678888887666 7999999998764    4567889999999998  8888899


Q ss_pred             c--CCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         261 Y--NGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       261 ~--~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                      .  .||.+|+ ++|||++||||+|++++||.+++++|++ .|++
T Consensus       196 ~rv~t~~~a~-~aGad~iVvGr~I~~a~dp~~a~~~l~~-~i~~  237 (246)
T 2yyu_A          196 VRVVTPRKAR-ALGSDYIVIGRSLTRAADPLRTYARLQH-EWNG  237 (246)
T ss_dssp             -CCCCHHHHH-HHTCSEEEECHHHHTSSSHHHHHHHHHH-HCC-
T ss_pred             cccCCHHHHH-HcCCCEEEECHhhcCCCCHHHHHHHHHH-HHHH
Confidence            4  5999999 9999999999999999999999999987 4443

>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A*

Probab=99.93  E-value=5.1e-26  Score=229.87  Aligned_cols=164  Identities=20%  Similarity=0.230  Sum_probs=124.5

Q ss_pred             hHHHh-hhcccCHHHHHHHHHHHhc-c-ccceEEEcccCCchhHHHHHHHhhhhCCCC---ceEEEEEeCCCCCCChHHH
Q psy4093         108 LWSII-ILKLADIGAAVGHQFRLIG-E-WAHLVTVHSIAGPGPLQEIQRISDELGEDR---GVFLIAQLSCQGNLIDEKY  181 (434)
Q Consensus       108 ~~si~-dlKl~DI~nTv~~~~~~~~-~-~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~---~v~~v~~lss~~sl~~~~~  181 (434)
                      ++.++ |+|++|||||+..+++.+. . ++|++|||+++|.+||+++++...  +  +   ++++|+.||+++   ..++
T Consensus       161 g~~VflDlK~~DIgnTva~ya~a~~~~lgaD~vTVhp~~G~dsl~~a~~~~~--~--k~~~gV~VL~lTSN~~---~~dl  233 (353)
T 2ffc_A          161 NVPTILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMGTQMLRDICLDEE--C--KRYYSTFVLVKTTNAD---SHIF  233 (353)
T ss_dssp             TCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTCSTTHHHHHBCTT--S--CCBCEEEEEEECSSTT---THHH
T ss_pred             CCcEEEEEecCchHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHhc--C--CCcceEEEehhcCCCC---HHHH
Confidence            34455 9999999999999998775 3 699999999999999999984432  3  4   677777777653   3445


Q ss_pred             Hhhc-chhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcC--------CC-CceEE--eCccchh---hcCCCceEecC
Q psy4093         182 TQVG-FKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFP--------GL-IAGLV--CQAPSVL---ASNPGLLQLTP  246 (434)
Q Consensus       182 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~--------~g-v~GvV--cs~~e~~---~~~~~~l~vtP  246 (434)
                      ++.+ ....                  ..++.|+++|+.+.        .| +++||  |++.|+.   ...+++++|||
T Consensus       234 q~~~~~~g~------------------~v~e~V~~~A~~~g~~~~~~~~~G~~g~VVGats~~el~~IR~~~~~~~iLtP  295 (353)
T 2ffc_A          234 QNRLSLDGK------------------EAYVVIAEEVQKMAKQLHLEENGEFVGFVVGANCYDEIKKIRELFPDCYILAP  295 (353)
T ss_dssp             HTTCEETTE------------------EHHHHHHHHHHHHHHHTTTGGGTCCEEEEECTTCHHHHHHHHHHCTTCCEEEC
T ss_pred             HHhhccCCC------------------CHHHHHHHHHHHhCccccccCCCCCCCEEEeCCCHHHHHHHHHhCCCCeEEeC
Confidence            4422 1110                  12467777776653        23 77889  9998875   33458999999


Q ss_pred             cccccCCCCCCCCccCCHHHHHHHcCCC------EEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4093         247 GIHLNQTGDNKGQQYNGPTDVITLRGAD------LGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL  307 (434)
Q Consensus       247 GIr~~~~~~~~~dQ~~TP~~Ai~~~GAD------~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~  307 (434)
                      |||++  +       .+|++|+ ++|+|      +||||||||+|.||+++|++|+++.| ++++++
T Consensus       296 GIgaq--G-------GD~~~a~-~~Gad~~~~~~iIvVGR~I~~A~dp~~AA~~i~~ei~-~a~~~~  351 (353)
T 2ffc_A          296 GVGAQ--K-------GDLRKML-CNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIK-EVLAEL  351 (353)
T ss_dssp             CBSTT--C-------BCHHHHH-HHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHH-HHHHHC
T ss_pred             cccCC--C-------CCHHHHH-HcCCCcccCcEEEEECHHHcCCCCHHHHHHHHHHHHH-HHHHHh
Confidence            99986  3       3699999 99998      99999999999999999999999665 455554

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=99.89  E-value=6.1e-25  Score=209.19  Aligned_cols=184  Identities=17%  Similarity=0.129  Sum_probs=128.0

Q ss_pred             cceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhccccceEEEcccCCchhHHHHHHHhh
Q psy4093          78 FDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISD  156 (434)
Q Consensus        78 y~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~~  156 (434)
                      +-.+.|.|...|...|.+.+.......  .++.++ |+||+|||||+..++  ...|+|++|||+.+|.+||+++++..+
T Consensus        30 ~~~~ikvg~~lf~~~G~~~v~~l~~~~--p~~~iflDlKl~Dip~t~~~~~--~~~Gad~vtVH~~~g~~~l~~a~~~~~  105 (221)
T 3exr_A           30 EVDVIEAGTVCLLQVGSELVEVLRSLF--PDKIIVADTKCADAGGTVAKNN--AVRGADWMTCICSATIPTMKAARKAIE  105 (221)
T ss_dssp             GCSEEEECHHHHHHHCTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHH--HTTTCSEEEEETTSCHHHHHHHHHHHH
T ss_pred             CceEEEECHHHHHhcCHHHHHHHHHhC--CCCcEEEEEEeeccHHHHHHHH--HHcCCCEEEEeccCCHHHHHHHHHHHH
Confidence            345677788888666766554432210  023445 999999999999873  344899999999999999999999887


Q ss_pred             hhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchh-
Q psy4093         157 ELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVL-  235 (434)
Q Consensus       157 ~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~-  235 (434)
                      +.|....+++|++++|.   +.+...++ .        +.++.           +.++++|..++  .+|+|||++|+. 
T Consensus       106 ~~g~~~~~~~Vt~lts~---~~~~~~~~-~--------~~~~~-----------~~v~~~a~~~~--~~Gvv~s~~e~~~  160 (221)
T 3exr_A          106 DINPDKGEIQVELYGDW---TYDQAQQW-L--------DAGIS-----------QAIYHQSRDAL--LAGETWGEKDLNK  160 (221)
T ss_dssp             HHCTTTCEEEEECCSSC---CHHHHHHH-H--------HTTCC-----------EEEEECCHHHH--HHTCCCCHHHHHH
T ss_pred             hcCCCcceEEEEEcCCC---CHHHHHHH-H--------cCCHH-----------HHHHHHHHhcC--CCccccCHHHHHH
Confidence            66522357888888872   22232220 0        00111           11223333332  468999998775 


Q ss_pred             ---hcCCCc-eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093         236 ---ASNPGL-LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY  303 (434)
Q Consensus       236 ---~~~~~~-l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~  303 (434)
                         .++.+| +.|+||||++           +-.+++ ++|||++||||+|++|+||.+++++|++ .|+.|
T Consensus       161 ir~~~~~~~~i~v~gGI~~~-----------~~~~~~-~aGad~~VvG~~I~~a~dp~~a~~~~~~-~~~~~  219 (221)
T 3exr_A          161 VKKLIEMGFRVSVTGGLSVD-----------TLKLFE-GVDVFTFIAGRGITEAKNPAGAARAFKD-EIKRI  219 (221)
T ss_dssp             HHHHHHHTCEEEEESSCCGG-----------GGGGGT-TCCCSEEEECHHHHTSSSHHHHHHHHHH-HHHHH
T ss_pred             HHHhhcCCceEEEECCCCHH-----------HHHHHH-HCCCCEEEECchhhCCCCHHHHHHHHHH-HHHHH
Confidence               456678 5899999986           224778 8999999999999999999999999997 56544

>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A

Probab=99.84  E-value=4.5e-22  Score=191.34  Aligned_cols=99  Identities=26%  Similarity=0.374  Sum_probs=85.6

Q ss_pred             cccCCCCCccccCC-----CCCcccccccccCCCCeecEEEcCCc-----------------------------------
Q psy4093          15 EESGQFEGDIMLEG-----PERTGVISSIDRWPGGLIPYYIDDDH-----------------------------------   54 (434)
Q Consensus        15 e~~g~~EGDi~l~~-----~~rng~~~~~~rWPn~~VpY~I~~~~-----------------------------------   54 (434)
                      +.+|+|||||+++.     ..|||+..+..|||+++|||.|++ +                                   
T Consensus        13 ~~~~~~eGDi~~~~~~~~~~~Rna~~~~~~~Wp~~~VpY~I~~-~t~~~~~~I~~Am~~w~~~TCIrFvprt~e~dyI~f   91 (235)
T 3lq0_A           13 YNDGMFEGDIKLRAGRQPARVGAAILGDEYLWSGGVIPYTFAG-VSGADQSAILSGMQELEEKTCIRFVPRTTESDYVEI   91 (235)
T ss_dssp             CCTTCBTTTEECCSSCCCEEETTEEECGGGSCGGGEEEEEEES-CCHHHHHHHHHHHHHHHHHSSCEEEECSSCSSEEEE
T ss_pred             cCCCccccceeecccCCCccCcceeeCCCCcCCCCEEEEEEcC-CCHHHHHHHHHHHHHHHhcccceEEEcCCCCceEEE
Confidence            46799999999932     469999999999999999999987 3                                   


Q ss_pred             -----cc-----------------------------------------------------------ccccccccCCCCcc
Q psy4093          55 -----FC-----------------------------------------------------------TERNFKKYPPSEIT   70 (434)
Q Consensus        55 -----~c-----------------------------------------------------------~~~NF~k~~~~~~~   70 (434)
                           ||                                                           +++||+|++..  +
T Consensus        92 ~~~~~GC~S~vG~~gg~Q~lsL~~~gC~~~g~i~HEl~HaLGf~HEhsR~DRD~yV~I~~~nI~~~~~~nF~k~~~~--~  169 (235)
T 3lq0_A           92 FTSGSGCWSYVGRISGAQQVSLQANGCVYHGTILHALMHAIGFYHEHTRMDRDNYVTINYQNVDPSMTSNFDIDTYS--R  169 (235)
T ss_dssp             ESSSSSEEEESSCCSSEEEEEECTTTTCSHHHHHHHHHHHHHBCCGGGSTTGGGTEEECGGGBCTTSGGGGCCCTTS--C
T ss_pred             EeCCCCCccccCCcCCcceEecCCCCCCccchHHHHHHHHhccceeeecccccceeEeehhccCcchHHHhccCCcc--c
Confidence                 12                                                           56899999876  7


Q ss_pred             cCccccccceecccchhhhccC-CCcccccc-c------hhchhhhHHHhhhcc
Q psy4093          71 DFGVGYDFDSVMHYSRKAFSKN-GDDTIVPH-F------VMAQNVLWSIIILKL  116 (434)
Q Consensus        71 ~~g~pYDy~SVMhYg~~aFs~~-g~~Ti~~~-~------~igqr~~~si~dlKl  116 (434)
                      ++|+||||+|||||++++||+| |++||+|+ +      .+|||.++|..|++.
T Consensus       170 ~~g~pYDy~SvMHY~~~aFs~n~g~~Ti~~~~~~~~~~~~iGqr~~lS~~Di~~  223 (235)
T 3lq0_A          170 YVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDPYDKAHMLQTDANQ  223 (235)
T ss_dssp             CCCSCCCTTCTTCCCTTTTBTTTTTSCSEEESSTTCCCCCGGGCSSCCHHHHHH
T ss_pred             cCCCcCCCCcccCCCCcccccCCCCCcEEECCCCCcccccccccCCCCHHHHHH
Confidence            8999999999999999999999 99999986 2      699999999887543

>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii}

Probab=99.83  E-value=1e-21  Score=193.76  Aligned_cols=176  Identities=15%  Similarity=0.115  Sum_probs=118.5

Q ss_pred             ccceecccchhhhccCCCccccccc---hhchhhhHHHh-hhcccCHHHHHHHHHHHhcc--c-cceEEEcccCCchhHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHF---VMAQNVLWSII-ILKLADIGAAVGHQFRLIGE--W-AHLVTVHSIAGPGPLQ  149 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~---~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~--~-~d~vTvH~~~G~~ml~  149 (434)
                      ||-...+-+...|...|...+....   ..-++.++.+| |+|++|||||++.+++.+.+  + +|++|||+++|.+||+
T Consensus        58 ~~v~~~Kvg~~lf~~~G~~~v~~L~~~i~~~~~~g~~VflDlK~~DIpnTv~~~a~~~~~~~lg~D~vTvh~~~G~~~l~  137 (290)
T 3r89_A           58 DVCAIYKLQIAYYESYGIEGMIAYRDTLSYLREKDLLSIGDVKRSDIAASAKMYAKAHFEGDFETDFITLNPYMGMDSIE  137 (290)
T ss_dssp             TSCSEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTTCCEEEEEEECCCHHHHHHHHHHHHSGGGCCSEEEECCTTCGGGTG
T ss_pred             CcceEEEecHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEecccCcHHHHHHHHHHHhccccCCCEEEEcccCCHHHHH
Confidence            4555666667777666644332211   11112344555 99999999999999887665  5 9999999999999999


Q ss_pred             HHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHh----hcCC---
Q psy4093         150 EIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQ----SFPG---  222 (434)
Q Consensus       150 ~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~----~a~~---  222 (434)
                      ++++.+.+.+  +++++|+.||++++.+.++.   ++...                  ..++.|+++++    .+.+   
T Consensus       138 ~~~~~a~~~~--kgv~vL~~tSn~g~~d~q~~---~~~~g------------------~l~~~V~~~a~~~~~~~~g~~~  194 (290)
T 3r89_A          138 PYEEYIEKGD--KGVFVLLRTSNPGAKDFEVL---PVDGE------------------EFFYKVGDKMRELNEKYIGKSG  194 (290)
T ss_dssp             GGHHHHHTTS--CEEEEEEECCSGGGGTTTTC---EETTE------------------ETHHHHHHHHHHHHGGGCCTTS
T ss_pred             HHHHHHHhcC--CeEEEEEeCCCCCHHHHhhc---ccCCC------------------CHHHHHHHHHHHHhhhccCCCC
Confidence            9999887655  78999999999876543332   11000                  12355665554    3311   


Q ss_pred             -CCceEEeC---ccchh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCC----CEEEeCCcccCCC
Q psy4093         223 -LIAGLVCQ---APSVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGA----DLGVVGRGITQAP  286 (434)
Q Consensus       223 -gv~GvVcs---~~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GA----D~IVVGR~It~A~  286 (434)
                       |.+|+||+   +.|+.    .+++.| +++||||++         +.+++++. ..++    -+|.++|+|+.|.
T Consensus       195 ~g~~GvVvgAT~p~e~~~iR~~~~~~~-iL~PGiGaQ---------Gg~~~d~~-~~~~~g~g~lvn~SR~Il~a~  259 (290)
T 3r89_A          195 FGPIGLVVGATHSEEVEKIRKRYDKMF-FLIPGFGAQ---------KADSMNVY-KLLEGLNGGVVNSSRAILKNW  259 (290)
T ss_dssp             CEEEEEEECCCCHHHHHHHHHHTTTEE-EEECCCCSS---------HHHHHHHH-TTCBTTBSEEEEECHHHHTGG
T ss_pred             CCceEEEECCCChHHHHHHHHhCCCCe-EEECCcCCC---------CCCHHHHH-HHHhcCCcEEEECCHHHHhCC
Confidence             26899999   45553    455555 788999987         44555555 4332    3888999999984

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=99.81  E-value=6.2e-20  Score=172.15  Aligned_cols=140  Identities=24%  Similarity=0.322  Sum_probs=107.8

Q ss_pred             hhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhH
Q psy4093         112 IILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAIT  190 (434)
Q Consensus       112 ~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~  190 (434)
                      +|+|++||++|+..+++.+.+ ++|++|||+.+|.++++.+++..       ++.+++.|+.+      .+.+ ++.   
T Consensus        56 ~D~kl~DI~~t~~~~v~~~~~~Gad~vtvh~~~g~~~i~~~~~~~-------gv~vl~~t~~~------~~~~-~~~---  118 (208)
T 2czd_A           56 ADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELG-------EIIMVVEMSHP------GALE-FIN---  118 (208)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHTTS-------EEEEECCCCSG------GGGT-TTG---
T ss_pred             EEeeeCchHHHHHHHHHHHHhcCCCEEEEeccCCHHHHHHHHHhC-------CcEEEEecCCc------chhh-HHH---
Confidence            399999999999999987777 59999999999999988876432       35555554431      1111 000   


Q ss_pred             HHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCcc---chh----hcCCCceEecCcccccCCCCCCCCccCC
Q psy4093         191 LELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAP---SVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNG  263 (434)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~---e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~T  263 (434)
                                       ..++.+++++...  |.+|++|++.   +..    .++.++++++|||+++         ..+
T Consensus       119 -----------------~~v~~~~~~a~~~--G~~G~~~~~~~~~~i~~lr~~~~~~~~iv~gGI~~~---------g~~  170 (208)
T 2czd_A          119 -----------------PLTDRFIEVANEI--EPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQ---------GGK  170 (208)
T ss_dssp             -----------------GGHHHHHHHHHHH--CCSEEECCCSSTHHHHHHHHHSCTTCEEEECCCCSS---------TTH
T ss_pred             -----------------HHHHHHHHHHHHh--CCcEEEECCCChHHHHHHHHhCCCCeEEEECCCCCC---------CCC
Confidence                             1235677777665  7999999996   332    4555688899999985         346


Q ss_pred             HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      |.+++ ++|||++||||+|++++||.++++++++
T Consensus       171 ~~~~~-~aGad~vvvGr~I~~a~dp~~~~~~l~~  203 (208)
T 2czd_A          171 AKDAV-KAGADYIIVGRAIYNAPNPREAAKAIYD  203 (208)
T ss_dssp             HHHHH-HHTCSEEEECHHHHTSSSHHHHHHHHHH
T ss_pred             HHHHH-HcCCCEEEEChHHhcCCCHHHHHHHHHH
Confidence            99999 9999999999999999999999999987

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}

Probab=99.81  E-value=7.3e-21  Score=183.33  Aligned_cols=80  Identities=20%  Similarity=0.187  Sum_probs=70.7

Q ss_pred             HHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHH
Q psy4093         335 DIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSL  414 (434)
Q Consensus       335 ~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~  414 (434)
                      +||++|+++||||||+++.+++++++++++|++|++|+|+++|.++|++++++|+    ++||+||+|+|||||||||++
T Consensus         2 ~~m~~k~~~LivALD~~~~~~al~l~~~~~~~v~~~Kvg~~lf~~~G~~~v~~L~----~~g~~iflDlK~~DI~nTv~~   77 (239)
T 3tr2_A            2 NAMEKPDPKVIVAIDAGTVEQARAQINPLTPELCHLKIGSILFTRYGPAFVEELM----QKGYRIFLDLKFYDIPQTVAG   77 (239)
T ss_dssp             ------CCCEEEECCCSSHHHHHHHHTTCCTTTCEEEEEHHHHHHHHHHHHHHHH----HTTCCEEEEEEECSCHHHHHH
T ss_pred             hhHhhCCCCeEEEeCCCCHHHHHHHHHHhCCcccEEEeCHHHHHhhCHHHHHHHH----hcCCCEEEEecccccchHHHH
Confidence            6899999999999999999999999999999999999999999999999999996    379999999999999999998


Q ss_pred             Hhhc
Q psy4093         415 RFRD  418 (434)
Q Consensus       415 a~~~  418 (434)
                      +++.
T Consensus        78 ~~~~   81 (239)
T 3tr2_A           78 ACRA   81 (239)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.80  E-value=9.5e-21  Score=202.88  Aligned_cols=99  Identities=38%  Similarity=0.627  Sum_probs=81.3

Q ss_pred             cCCCCCccccCCC-CCcccccccccCCCCeecEEEcCCc---------------------------------------cc
Q psy4093          17 SGQFEGDIMLEGP-ERTGVISSIDRWPGGLIPYYIDDDH---------------------------------------FC   56 (434)
Q Consensus        17 ~g~~EGDi~l~~~-~rng~~~~~~rWPn~~VpY~I~~~~---------------------------------------~c   56 (434)
                      ..+|||||+++++ .||+++++.+|||| +|||+|++++                                       ||
T Consensus        24 ~~lfeGDI~l~~~~~rn~~~~~~~rWp~-~IPY~i~~~~~~~~~~~I~~Am~~~~~~TCIrF~pr~~e~~yi~i~~~~GC  102 (592)
T 4gwm_A           24 LDLFEGDIRLDRAQIRNSIIGEKYRWPH-TIPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGC  102 (592)
T ss_dssp             CCCBTTTBCCCTTCCTTCCCCGGGCCCS-EEEEEECTTSCHHHHHHHHHHHHHHHHHSSCEEEECSSCSSEEEEECCSSE
T ss_pred             CCeeccccCCCchhhhhhhcCccccCCc-eEEEEECCCCCHHHHHHHHHHHHHHHhCCceeeEECCCCCCeEEEecCCcE
Confidence            3579999999854 69999999999996 8999998774                                       23


Q ss_pred             -----------------------------------------------------------ccccccccCCCCcccCccccc
Q psy4093          57 -----------------------------------------------------------TERNFKKYPPSEITDFGVGYD   77 (434)
Q Consensus        57 -----------------------------------------------------------~~~NF~k~~~~~~~~~g~pYD   77 (434)
                                                                                 +++||+|++...++++|+|||
T Consensus       103 ~S~vG~~~gg~Q~lsl~~gC~~~Gti~HEl~HALGf~HEqsR~DRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYD  182 (592)
T 4gwm_A          103 WSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYD  182 (592)
T ss_dssp             EECSSCCCSSEEEEEECTTCCCHHHHHHHHHHHHTCCCSTTSTTGGGTEEECGGGBCTTCGGGGCCCCC------CCCCC
T ss_pred             eeeeCccCCCceEEeeCCCcCCCChHHHHHHHHhcccccccCcCccceEEEehhhcCcchhhHHhhcCccccccCCCCcC
Confidence                                                                       678999999999999999999


Q ss_pred             cceecccchhhhccCCCccccccc-----hhchhhhHHHhhhcc
Q psy4093          78 FDSVMHYSRKAFSKNGDDTIVPHF-----VMAQNVLWSIIILKL  116 (434)
Q Consensus        78 y~SVMhYg~~aFs~~g~~Ti~~~~-----~igqr~~~si~dlKl  116 (434)
                      |+|||||++++||++|++||+++.     .+|||.++|..|++.
T Consensus       183 y~SVMHY~~~aFs~~~~~Ti~~~~~~~~~~iGqr~~lS~~Di~~  226 (592)
T 4gwm_A          183 YTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLK  226 (592)
T ss_dssp             TTCTTSCCTTTTBSSSSCSEEESSGGGTTTTTCCSSCCHHHHHH
T ss_pred             CCccCcCCCCccccCCcceEEecCCCccCCccccccCcHHHHHH
Confidence            999999999999999999999864     599999999887543

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=99.77  E-value=1.9e-19  Score=178.64  Aligned_cols=84  Identities=21%  Similarity=0.149  Sum_probs=70.5

Q ss_pred             HHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchh
Q psy4093         331 STLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILS  410 (434)
Q Consensus       331 ~~l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpn  410 (434)
                      .+|+++|+.|+++||||||+++.+++++++++++|++|++|+|+++|.++|++++++|++   .+||+||+|+|||||||
T Consensus        14 ~~l~~~~~~k~~~LiVALD~~~~~eal~l~~~l~~~v~~vKVG~~lf~~~G~~~V~~Lk~---~~g~~IflDlKl~DIpn   90 (303)
T 3ru6_A           14 GTENLYFQSNAMKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFIEELKK---VDDFKIFLDLKFHDIPN   90 (303)
T ss_dssp             ----------CCEEEEECCCSSHHHHHHHHHHTTTSSCEEEECHHHHHHHTHHHHHHHHH---HCCCEEEEEEEECSCHH
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHhCCCccEEEeCHHHHHHhCHHHHHHHHH---hhCCCEEEEeeeccCch
Confidence            478999999999999999999999999999999999999999999999999999999864   35999999999999999


Q ss_pred             HHHHHhh
Q psy4093         411 SFSLRFR  417 (434)
Q Consensus       411 TV~~a~~  417 (434)
                      ||+++++
T Consensus        91 Tv~~av~   97 (303)
T 3ru6_A           91 TMADACE   97 (303)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            9998886

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=99.73  E-value=3.9e-19  Score=169.92  Aligned_cols=85  Identities=18%  Similarity=0.118  Sum_probs=76.5

Q ss_pred             hHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcch
Q psy4093         330 SSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPIL  409 (434)
Q Consensus       330 ~~~l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIp  409 (434)
                      .+|||+||+. +++||||+|+++.++++++++++++++|++|+|+++|.++|++++++|++   .+|++||+|+||||||
T Consensus         2 ~~~~~~~m~~-~~~lilAlD~~~~~~a~~~v~~~~~~v~~~Kvg~~lf~~~G~~~v~~l~~---~~g~~v~lD~Kl~Dip   77 (228)
T 3m47_A            2 RSRRVDVMDV-MNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRK---RFGCRIIADFKVADIP   77 (228)
T ss_dssp             ---CTTSCCC-GGGEEEECCCCSHHHHHHHHHTTTTTCSEEEEEHHHHHHHCTHHHHHHHH---HHCCEEEEEEEECSCH
T ss_pred             cchHHHHhhc-CCCeEEEeCCCCHHHHHHHHHHcCCcccEEEEcHHHHHhcCHHHHHHHHh---cCCCeEEEEEeecccH
Confidence            4789999997 88999999999999999999999999999999999999999999999864   2699999999999999


Q ss_pred             hHHHHHhhc
Q psy4093         410 SSFSLRFRD  418 (434)
Q Consensus       410 nTV~~a~~~  418 (434)
                      |||+++++.
T Consensus        78 nTv~~~~~~   86 (228)
T 3m47_A           78 ETNEKICRA   86 (228)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            999887654

>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}

Probab=99.73  E-value=3.5e-18  Score=166.10  Aligned_cols=87  Identities=18%  Similarity=0.115  Sum_probs=74.5

Q ss_pred             hHHHHHHhhhcCCcEEEEecCCC------HHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHh--cCCCeeee
Q psy4093         330 SSTLLDIMVKKKSNLCVALDVTQ------AKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAK--QHEFLRSR  401 (434)
Q Consensus       330 ~~~l~~~m~~k~s~LivAlD~~~------~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~--k~gf~iFl  401 (434)
                      ..||.+.  +|+++|||+||.+.      .+.+++++++++|++|++|+|+++|.++|+++++.|+++.+  ++||+||+
T Consensus         4 ~~~l~~~--~~~~~LcVgLD~~~~~~~~~~~~~~~lv~~l~~~v~~~Kvg~~lf~~~G~~g~~~l~~l~~~~~~g~~Vfl   81 (255)
T 3qw3_A            4 FDLLNER--AKRSLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKPNAAFFEFFGAEGWAALSEVIRAVPAGIPVVL   81 (255)
T ss_dssp             HHHHHHH--HTTCCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEEBHHHHHTTTHHHHHHHHHHHHHSCTTCCBEE
T ss_pred             HHHHHHH--hcCCCEEEEeCCCchhcchHHHHHHHHHHHhCCcCcEEEEcHHHHHhcCHHHHHHHHHHHHHhcCCCeEEE
Confidence            3556665  78999999999886      68899999999999999999999999999986666666544  37999999


Q ss_pred             cCCCCcchhHHHHHhhc
Q psy4093         402 NGWFSPILSSFSLRFRD  418 (434)
Q Consensus       402 DlKf~DIpnTV~~a~~~  418 (434)
                      |+|||||||||+.+.++
T Consensus        82 DlK~~DI~nTv~~~a~~   98 (255)
T 3qw3_A           82 DAKRGDIADTADAYATS   98 (255)
T ss_dssp             EEEECCCHHHHHHHHHH
T ss_pred             EeecCCcHHHHHHHHHH
Confidence            99999999999776644

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}

Probab=99.72  E-value=2.3e-18  Score=167.70  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=70.0

Q ss_pred             CCcEEEEecCCCHHHHHHHHHHhCCce-eEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhcC
Q psy4093         341 KSNLCVALDVTQAKDLLTLTRQLGPHI-AVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDD  419 (434)
Q Consensus       341 ~s~LivAlD~~~~~~al~la~~lgp~i-~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~~  419 (434)
                      +++||||||+++.+++++|+++++|++ |++|+|++||.++|++++++|++    .||+||+|+|||||||||+.+++.-
T Consensus         4 ~~~LivALD~~~~~~al~l~~~l~~~v~~~~KvG~~l~~~~G~~~v~~Lk~----~g~~VflDlK~~DIpnTv~~a~~~~   79 (259)
T 3tfx_A            4 DRPVIVALDLDNEEQLNKILSKLGDPHDVFVKVGMELFYNAGIDVIKKLTQ----QGYKIFLDLKMHDIPNTVYNGAKAL   79 (259)
T ss_dssp             CCCEEEECCCSCHHHHHHHHHTTCCGGGCEEEECHHHHHHHCHHHHHHHHH----TTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCHHHHHHHHHHhCcccceEEEeCHHHHHhcCHHHHHHHHH----CCCcEEEEecccccchHHHHHHHHH
Confidence            468999999999999999999999999 99999999999999999999964    5999999999999999999877653

>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii}

Probab=99.71  E-value=4.1e-18  Score=168.19  Aligned_cols=89  Identities=18%  Similarity=0.185  Sum_probs=78.3

Q ss_pred             hhHHHHHHhhhcCCcEEEEecCCC-------------HHHH----HHHHHHhCCceeEEeEceeeeecCCHHHHHHHH--
Q psy4093         329 ISSTLLDIMVKKKSNLCVALDVTQ-------------AKDL----LTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELT--  389 (434)
Q Consensus       329 ~~~~l~~~m~~k~s~LivAlD~~~-------------~~~a----l~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~--  389 (434)
                      ..+||++. .+|+++|||++|...             .+.+    ++++++++|++|++|+|+++|.++|+++++.|+  
T Consensus         6 ~~~rL~~~-~~k~s~LcvglDp~~~~lp~~~~~~~~~~~~l~~f~~~ivd~l~~~v~~~Kvg~~lf~~~G~~~v~~L~~~   84 (290)
T 3r89_A            6 IIDKLYEK-VSKNGFVCIGLDSSIDYIPENMKAGKSVSEALFSYNKEIIDQTYDVCAIYKLQIAYYESYGIEGMIAYRDT   84 (290)
T ss_dssp             HHHHHHHH-HHHHCSEEEECCCCGGGSCHHHHTTCCHHHHHHHHHHHHHHHHTTSCSEEEEEHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHhCCCEEEEECCChhhCchhhccccchHHHHHHHHHHHHHHhCCcceEEEecHHHHHhcCHHHHHHHHHH
Confidence            66889999 889999999999876             3454    899999999999999999999999999887664  


Q ss_pred             -HHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         390 -ALAKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       390 -~la~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                       +.++++||+||+|+|||||||||+++.++
T Consensus        85 i~~~~~~g~~VflDlK~~DIpnTv~~~a~~  114 (290)
T 3r89_A           85 LSYLREKDLLSIGDVKRSDIAASAKMYAKA  114 (290)
T ss_dssp             HHHHHHTTCCEEEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHCCCeEEEEecccCcHHHHHHHHHH
Confidence             45677899999999999999999876654

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*

Probab=99.71  E-value=2.4e-18  Score=167.15  Aligned_cols=74  Identities=22%  Similarity=0.269  Sum_probs=69.9

Q ss_pred             CCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         341 KSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       341 ~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      +++||||||+++.+++++++++++|++|++|+|+++|.++|++++++|++    +||+||+|+|||||||||+++++.
T Consensus        27 ~~~LivALD~~~~~~al~l~~~l~~~v~~~KvG~~l~~~~G~~~v~~Lk~----~g~~VflDlK~~DIpnTv~~a~~~  100 (255)
T 3ldv_A           27 DPKVIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPDFVRELHK----RGFSVFLDLKFHDIPNTCSKAVKA  100 (255)
T ss_dssp             CCCEEEEECCSSHHHHHHHHTTSCGGGCEEEEEHHHHHHHHHHHHHHHHH----TTCCEEEEEEECSCHHHHHHHHHH
T ss_pred             CCCeEEEcCCCCHHHHHHHHHHhCCcCcEEEeCHHHHHhhCHHHHHHHHh----cCCCEEEEEecccchhHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999963    799999999999999999988764

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=99.70  E-value=2e-18  Score=163.82  Aligned_cols=71  Identities=17%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             CcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         342 SNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       342 s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      +|||||||+   +++++++++++|++|++|+|+++|.++|++++++|++   ++||+||+|+|||||||||+++++.
T Consensus         2 ~~livALD~---~~al~l~~~l~~~v~~~KvG~~l~~~~G~~~v~~L~~---~~g~~VflDlK~~DIpnTv~~a~~~   72 (215)
T 3ve9_A            2 NRVILSLDS---PIPEETLRKLNGKVAGIKVGWPLLLNLGKEKVKELVG---LVDGIKILDLKLADIDNTMILIVDE   72 (215)
T ss_dssp             CCEEEEESS---CCCHHHHHHHHTTSSEEEEEHHHHHHHCHHHHHHHHT---TCCSEEEEEEEECSCHHHHHHHHHH
T ss_pred             CCeEEECCH---HHHHHHHHHhCCcCcEEEecHHHHHhhCHHHHHHHHH---hcCCcEEEEecccCchhHHHHHHHH
Confidence            689999999   9999999999999999999999999999999988852   3799999999999999999988754

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=99.70  E-value=6.8e-18  Score=160.55  Aligned_cols=79  Identities=18%  Similarity=0.171  Sum_probs=72.1

Q ss_pred             hhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcC-CCeeeecCCCCcchhHHHHH
Q psy4093         337 MVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQH-EFLRSRNGWFSPILSSFSLR  415 (434)
Q Consensus       337 m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~-gf~iFlDlKf~DIpnTV~~a  415 (434)
                      |++|+++||||||+++.++++++++++++++|++|+|.++|.++|+++|++|++   .+ |++||+|+|||||||||..+
T Consensus         1 ~~~~~~~livAlD~~~~~~a~~~~~~~~~~~~~ikvg~~lf~~~G~~~v~~l~~---~~p~~~iflDlKl~Dip~t~~~~   77 (221)
T 3exr_A            1 MTKQLPNLQVALDHSNLKGAITAAVSVGNEVDVIEAGTVCLLQVGSELVEVLRS---LFPDKIIVADTKCADAGGTVAKN   77 (221)
T ss_dssp             --CCCCEEEEEECCSSHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHH---HCTTSEEEEEEEECSCHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHhhCCCceEEEECHHHHHhcCHHHHHHHHH---hCCCCcEEEEEEeeccHHHHHHH
Confidence            788899999999999999999999999999999999999999999999999964   34 89999999999999999998


Q ss_pred             hhc
Q psy4093         416 FRD  418 (434)
Q Consensus       416 ~~~  418 (434)
                      +..
T Consensus        78 ~~~   80 (221)
T 3exr_A           78 NAV   80 (221)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            643

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=99.69  E-value=6e-18  Score=161.29  Aligned_cols=73  Identities=14%  Similarity=0.032  Sum_probs=67.4

Q ss_pred             CCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCC-eeeecCCCCcchhHHHHHhhcC
Q psy4093         341 KSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEF-LRSRNGWFSPILSSFSLRFRDD  419 (434)
Q Consensus       341 ~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf-~iFlDlKf~DIpnTV~~a~~~~  419 (434)
                      .++||||||++   ++++++++++|++|++|+|+++|.++|++++++|++   .+|| +||+|+|||||||||++++++-
T Consensus         3 ~~~livALD~~---~al~l~~~l~~~v~~~KvG~~l~~~~G~~~v~~L~~---~~~~~~VflDlK~~DI~nTv~~~~~~~   76 (222)
T 4dbe_A            3 KSRVILAMDKP---LSYQVLKEMENELYGIKVGLPLVLDLGVDKTRELLI---GLDVEEIIVDFKLADIGYIMKSIVERL   76 (222)
T ss_dssp             CCCEEEEESSC---CCHHHHHHHGGGCSEEEEEHHHHHHHCHHHHHHHHH---TCCCSEEEEEEEECSCHHHHHHHHTTC
T ss_pred             CCCeEEECCHH---HHHHHHHHhCCcCcEEEECHHHHHhhCHHHHHHHHH---hcCCCeEEEEeeecchHHHHHHHHHHH
Confidence            57899999999   999999999999999999999999999999999964   2699 9999999999999999877653

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=99.63  E-value=4.4e-17  Score=153.44  Aligned_cols=169  Identities=20%  Similarity=0.172  Sum_probs=106.6

Q ss_pred             chhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhccccceEEEcccCCchhHHHHHHHhhhhCCCCc
Q psy4093          85 SRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRG  163 (434)
Q Consensus        85 g~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~  163 (434)
                      +-..|-..|.+.|.......  .+..++ |+|++|||+|+...  ....++|++|||+.+|.+|++++++..++.|  .+
T Consensus        35 ~~~~f~~~G~~~i~~l~~~~--p~~~v~lD~kl~dip~t~~~~--~~~~Gad~itvh~~~g~~~l~~~~~~~~~~g--~~  108 (216)
T 1q6o_A           35 GTILCVGEGVRAVRDLKALY--PHKIVLADAKIADAGKILSRM--CFEANADWVTVICCADINTAKGALDVAKEFN--GD  108 (216)
T ss_dssp             CHHHHHHHCTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHH--HHHTTCSEEEEETTSCHHHHHHHHHHHHHTT--CE
T ss_pred             CHHHHHHhCHHHHHHHHHhC--CCCeEEEEEEecccHHHHHHH--HHhCCCCEEEEeccCCHHHHHHHHHHHHHcC--CC
Confidence            34445444555543332210  012334 99999999998763  3334799999999999999999988877655  33


Q ss_pred             eEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHH---HHHhhcCCCCceEEeCccchh----h
Q psy4093         164 VFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETL---KLAQSFPGLIAGLVCQAPSVL----A  236 (434)
Q Consensus       164 v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~---~lA~~a~~gv~GvVcs~~e~~----~  236 (434)
                      + .+..++..++...+.+.+.|+            .           +.++   .++...  |.+|   +..+..    .
T Consensus       109 ~-~~~ll~~~t~~~~~~l~~~~~------------~-----------~~vl~~a~~~~~~--G~~g---~~~~i~~lr~~  159 (216)
T 1q6o_A          109 V-QIELTGYWTWEQAQQWRDAGI------------G-----------QVVYHRSRDAQAA--GVAW---GEADITAIKRL  159 (216)
T ss_dssp             E-EEEECSCCCHHHHHHHHHTTC------------C-----------EEEEECCHHHHHT--TCCC---CHHHHHHHHHH
T ss_pred             c-eeeeeeCCChhhHHHHHhcCc------------H-----------HHHHHHHHHHHhc--CCCC---CHHHHHHHHHh
Confidence            2 121221111111222222111            1           1223   344333  5666   444432    3


Q ss_pred             cCCCc-eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         237 SNPGL-LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       237 ~~~~~-l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                      ++.++ +.++|||+++           ++.+++ ++|||++||||+|++++||.++++++++ .|+
T Consensus       160 ~~~~~~i~v~GGI~~~-----------~~~~~~-~aGad~ivvG~~I~~a~dp~~~~~~~~~-~i~  212 (216)
T 1q6o_A          160 SDMGFKVTVTGGLALE-----------DLPLFK-GIPIHVFIAGRSIRDAASPVEAARQFKR-SIA  212 (216)
T ss_dssp             HHTTCEEEEESSCCGG-----------GGGGGT-TSCCSEEEESHHHHTSSCHHHHHHHHHH-HHH
T ss_pred             cCCCCcEEEECCcChh-----------hHHHHH-HcCCCEEEEeehhcCCCCHHHHHHHHHH-HHH
Confidence            44467 7999999986           468899 9999999999999999999999999987 554

>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A

Probab=99.62  E-value=3.1e-16  Score=158.50  Aligned_cols=92  Identities=9%  Similarity=0.050  Sum_probs=79.0

Q ss_pred             chhhHHHHHHhhhcCCcEEEEecCCCH----------------------------------------------------H
Q psy4093         327 CRISSTLLDIMVKKKSNLCVALDVTQA----------------------------------------------------K  354 (434)
Q Consensus       327 ~~~~~~l~~~m~~k~s~LivAlD~~~~----------------------------------------------------~  354 (434)
                      ++...||++.|.+|+++|||.||....                                                    +
T Consensus        19 ~~f~~rL~~~~~~~~s~LcvGlDp~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (352)
T 2fds_A           19 SHFKTKLKNRRNEVNTCLCIGLDPDEDDIKNFMRNEEKNGYKNVKNNMNSNNNRIENVIKIGKEILLTDEENIENLSEED   98 (352)
T ss_dssp             -CHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHTTTTSHHHHHHHC-CTTHHHHHCCSSHHHHTCCGGGGGGSCHHH
T ss_pred             ChHHHHHHHHHHHhCCCeEEEECCChHHhhhhhhhhhhhcccchhhccccccccccccccccccccccccccccchhhhH
Confidence            578999999999999999999998544                                                    2


Q ss_pred             HH--------HHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHH---HhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         355 DL--------LTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTAL---AKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       355 ~a--------l~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~l---a~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      ++        ++++++++|++|++|+|+++|.++|++++..|+++   ++++||+||+|+|||||||||+++.++
T Consensus        99 ~~~~~~~~f~~~iida~~~~v~~vKvg~~lf~~~G~~gv~~L~~~i~~lk~~g~~VflDlK~~DIgnTv~~ya~a  173 (352)
T 2fds_A           99 KFFYFFNHFCFYIINNTKEYALIYKMNFAFYIPYGSVGINALKNVFDYLNSMNIPTMLDMKINDIGNTVKNYRKF  173 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCSEEEEEGGGTGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccCEEEecHHHHHhCCHHHHHHHHHHHHHHHHCCCeEEEEeecCchHHHHHHHHHH
Confidence            33        79999999999999999999999999998655542   456899999999999999999987554

>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}

Probab=99.59  E-value=8.9e-16  Score=160.20  Aligned_cols=87  Identities=18%  Similarity=0.115  Sum_probs=75.8

Q ss_pred             hHHHHHHhhhcCCcEEEEecCCC------HHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHh--cCCCeeee
Q psy4093         330 SSTLLDIMVKKKSNLCVALDVTQ------AKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAK--QHEFLRSR  401 (434)
Q Consensus       330 ~~~l~~~m~~k~s~LivAlD~~~------~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~--k~gf~iFl  401 (434)
                      ..||.+.  +++++||||||+++      .+.+++++++++|++|++|+|+++|.++|+++++.|+++.+  +.|++||+
T Consensus         5 ~~~l~~~--~~~~~l~vaLD~~~~~~~~~~~~a~~~v~~~~~~v~~~Kvg~~lf~~~G~~~v~~L~~~~~~~~~g~~Vfl   82 (453)
T 3qw4_B            5 FDLLNER--AKRSLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKPNAAFFEFFGAEGWAALSEVIRAVPAGIPVVL   82 (453)
T ss_dssp             HHHHHHH--TTTCCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEEBHHHHHTTHHHHHHHHHHHHHTSCTTSCBEE
T ss_pred             HHHHHHH--hhCCCEEEEeCCCcccccHHHHHHHHHHHHhCCcCcEEEEcHHHHHhcCHHHHHHHHHHHHhhcCCCeEEE
Confidence            3455555  77899999999999      89999999999999999999999999999999999975311  14999999


Q ss_pred             cCCCCcchhHHHHHhhc
Q psy4093         402 NGWFSPILSSFSLRFRD  418 (434)
Q Consensus       402 DlKf~DIpnTV~~a~~~  418 (434)
                      |+|||||||||+.+.++
T Consensus        83 DlK~~DIpnT~~~~a~~   99 (453)
T 3qw4_B           83 DAKRGDIADTADAYATS   99 (453)
T ss_dssp             EEEECCCHHHHHHHHHH
T ss_pred             EeecCChHHHHHHHHHH
Confidence            99999999999987755

>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A

Probab=99.58  E-value=3.4e-16  Score=147.11  Aligned_cols=108  Identities=34%  Similarity=0.553  Sum_probs=87.5

Q ss_pred             ccccCCCCCCcccccCCCCCccccCCCCCc-ccccccccCCCCeecEEEcCCccc-------------------------
Q psy4093           3 SLWKNRPSLNFWEESGQFEGDIMLEGPERT-GVISSIDRWPGGLIPYYIDDDHFC-------------------------   56 (434)
Q Consensus         3 ~~~~~~~~~~~~e~~g~~EGDi~l~~~~rn-g~~~~~~rWPn~~VpY~I~~~~~c-------------------------   56 (434)
                      ..|++.++++|.+..+  |.|.+. ...+. ||++...|..++.....+..  +|                         
T Consensus        36 ~~w~~~TCIrFv~~t~--e~dyI~-f~~~~~GC~S~vG~~g~~~q~~sl~~--~C~~~g~i~HEl~HalGf~HE~~R~DR  110 (201)
T 3edh_A           36 RHWEKHTCVTFLERTD--EDSYIV-FTYRPCGCCSYVGRRGGGPQAISIGK--NCDKFGIVVHELGHVVGFWHEHTRPDR  110 (201)
T ss_dssp             HHHHHHSSCEEEECSS--CSSEEE-EEECCSCSCCCSSCCCSSEEEEEECG--GGCSHHHHHHHHHHHHTBCCGGGSTTG
T ss_pred             HHHHhhccceEEEcCC--CCcEEE-EEcCCCCCccccCCcCCceeeeecCC--CcCccchhHHHHHHHhcchhhhhhhcc
Confidence            4688999999999874  456543 23344 99998888887766666654  34                         


Q ss_pred             --------------ccccccccCCCCcccCccccccceecccchhhhccC-CCccccccc-------hhchhhhHHHhhh
Q psy4093          57 --------------TERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVPHF-------VMAQNVLWSIIIL  114 (434)
Q Consensus        57 --------------~~~NF~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~-g~~Ti~~~~-------~igqr~~~si~dl  114 (434)
                                    +++||+|++...++++|+||||+|||||++++||++ |++||+|+.       .+|||.++|..|+
T Consensus       111 D~yV~I~~~ni~~~~~~nF~k~~~~~~~~~g~~YDy~SvMHY~~~aFs~~~~~~Ti~p~~~~~~~~~~iGqr~~lS~~Di  190 (201)
T 3edh_A          111 DRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDI  190 (201)
T ss_dssp             GGTEEECGGGBCTTCGGGGCCCCGGGBCCTTCCCCTTCTTCCCTTTTBSSTTSCSEEESSCBTTBCCCCCCCSSCCHHHH
T ss_pred             CcEEEEehhccCcchhHhhhcCChhhccccCCccCCCCcccCCCccccCCCCCCceEeCCCCCcccccCcccCCCCHHHH
Confidence                          678999999999999999999999999999999997 799999863       5899999997775


Q ss_pred             c
Q psy4093         115 K  115 (434)
Q Consensus       115 K  115 (434)
                      +
T Consensus       191 ~  191 (201)
T 3edh_A          191 A  191 (201)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}

Probab=99.56  E-value=8.2e-16  Score=144.33  Aligned_cols=56  Identities=32%  Similarity=0.417  Sum_probs=49.4

Q ss_pred             ccccccccCCCCcccCccccccceecccchhhhccC-CCccccccc----hhchhhhHHHhhhc
Q psy4093          57 TERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVPHF----VMAQNVLWSIIILK  115 (434)
Q Consensus        57 ~~~NF~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~-g~~Ti~~~~----~igqr~~~si~dlK  115 (434)
                      +++||+|++   ++++|+||||+|||||++++||+| |++||+|+.    .+|||.++|..|++
T Consensus       131 ~~~nF~k~~---~~~~~~pYDy~SvMHY~~~aFs~n~g~~Ti~~~~~~~~~iGqr~~lS~~Di~  191 (199)
T 3lqb_A          131 MAYNFLKQK---TNNQNTPYDYGSLMHYGKTAFAIQPGLETITPIPDENVQIGQRQGLSKIDIL  191 (199)
T ss_dssp             CGGGGCCCC---BCCTTCCCCTTCTTCCCTTTTBSSTTCCSEEESSCTTSCCCCCSSCCHHHHH
T ss_pred             hhhhccccc---ccccCCcCCCCcccCCCCcccccCCCCCeEEECCCCCCCcccccCCCHHHHH
Confidence            578999986   467999999999999999999999 999999973    69999999977743

>3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum, 5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE NUP; 1.47A {Plasmodium falciparum} SCOP: c.1.2.3 PDB: 2qaf_A* 3bar_A* 2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A 3vi2_A*

Probab=99.56  E-value=5.6e-16  Score=155.84  Aligned_cols=141  Identities=9%  Similarity=-0.056  Sum_probs=108.0

Q ss_pred             HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhhhhhccchhhHHHHHHhhhcCCc
Q psy4093         264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSN  343 (434)
Q Consensus       264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~m~~k~s~  343 (434)
                      ..+.+ +.--..++||    -.+||...-+-++++..+.|- .++...+       +|..+ .-.+.|+|+.+..+|++|
T Consensus        26 l~~~i-~~~~~~~~vg----lDp~~~~~p~~~~~~~~~~~~-~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~   91 (342)
T 3n3m_A           26 LEKRR-NAINTCLCIG----LDPDEKDIENFMKNEKENNYN-NIKKNLK-------EKYIN-NVSIKKDILLKAPDNIIR   91 (342)
T ss_dssp             HHHHH-HHHCCCEEEE----CCCCHHHHHHHHHHHHHTTTH-HHHHHHT-------CGGGG-GCSSCHHHHTSCHHHHHH
T ss_pred             HHHHH-HhhCCceEEe----cCCChHHhHHHHHHHHhhhhc-ccccccc-------ccccc-chhhhhhhhhhhhhhccc
Confidence            35556 3444568888    457788777788777666666 5543222       33331 235999999999999999


Q ss_pred             EEEEecCCCHHH--HHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHH---HhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         344 LCVALDVTQAKD--LLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTAL---AKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       344 LivAlD~~~~~~--al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~l---a~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      |+.+.|+-..-.  +++|+++++|++|++|+|+++|.++|+++++.|+++   ++++||+||+|+|||||||||+.++++
T Consensus        92 ~~~~~~~~~~~~~f~~~lvd~l~~~v~~vKvG~~lf~~~G~~gv~~l~~l~~~l~~~g~~VflDlK~~DIpnTv~~ya~~  171 (342)
T 3n3m_A           92 EEKSEEFFYFFNHFCFYIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKF  171 (342)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHGGGCSEEEEEGGGTSTTTHHHHHHHHHHHHHHHHHTCCEEEEEEECCCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhcCcCcEEEecHHHHHhcCHHHHHHHHHHHHHHHhCCCeEEEEeecCCcHHHHHHHHHH
Confidence            999888766555  789999999999999999999999998877555543   456899999999999999999887664

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=99.49  E-value=9.2e-15  Score=140.10  Aligned_cols=74  Identities=14%  Similarity=0.109  Sum_probs=68.5

Q ss_pred             cCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093         340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFR  417 (434)
Q Consensus       340 k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~  417 (434)
                      ++++||+|+|+++.+++++++++++++++++|+|+++|..+|+++++.|++    +|++||+|+|||||||||++.++
T Consensus         2 ~~~~lilalD~~~l~~~~~~~~~~~~~v~~~Kv~~d~~~~~G~~~v~~l~~----~~~~v~lD~kl~Dip~t~~~~~~   75 (239)
T 1dbt_A            2 KNNLPIIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLKE----RNCELFLDLKLHDIPTTVNKAMK   75 (239)
T ss_dssp             CCSSCEEECCCSSHHHHHHHTGGGTTSCCEEEECHHHHHHHTHHHHHHHHH----TTCEEEEEEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHhcccCcEEEECHHHHHHhCHHHHHHHHH----CCCcEEEEeccccchHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999963    68999999999999999987543

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=99.45  E-value=3.9e-14  Score=136.41  Aligned_cols=71  Identities=11%  Similarity=0.056  Sum_probs=66.5

Q ss_pred             CcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHh
Q psy4093         342 SNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF  416 (434)
Q Consensus       342 s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~  416 (434)
                      ++||+|+|+++.+++++++++++++++++|+|+++|..+|+++++.|++    +|++||+|+|||||||||+.++
T Consensus         5 ~~lilalD~~~l~~~~~~v~~~~~~v~~~Kv~~d~~~~~G~~~v~~lr~----~~~~v~lD~kl~Dip~t~~~~~   75 (246)
T 2yyu_A            5 TPFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKE----QGHAVFLDLKLHDIPNTVKQAM   75 (246)
T ss_dssp             CCEEEECCCSSHHHHHHHHGGGTTSCCEEEECHHHHHHHTHHHHHHHHH----TTCEEEEEEEECSCHHHHHHHH
T ss_pred             CCeEEEeCCCCHHHHHHHHHHhcccccEEEeCHHHHHHhCHHHHHHHHH----CCCeEEEEeecccchHHHHHHH
Confidence            5899999999999999999999999999999999999999999999964    6899999999999999987744

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=99.44  E-value=3.2e-14  Score=137.00  Aligned_cols=73  Identities=22%  Similarity=0.240  Sum_probs=67.9

Q ss_pred             cCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHh
Q psy4093         340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF  416 (434)
Q Consensus       340 k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~  416 (434)
                      |++++|+|+|+++.+++++++++++++++++|+|+++|..+|+++++.|++    +|++||+|+|||||||||++.+
T Consensus        13 ~~~~~ilalD~~~l~~~~~~~~~~~~~v~~~Kv~~d~~~~~G~~~v~~lr~----~~~~v~lD~kl~Dip~t~~~~i   85 (245)
T 1eix_A           13 TNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQ----RGFDIFLDLKFHDIPNTAAHAV   85 (245)
T ss_dssp             CCCCEEEEECCSSHHHHHHHHTTSCTTTCEEEEEHHHHHHHHHHHHHHHHH----TTCCEEEEEEECSCHHHHHHHH
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHhCccCcEEEEcHHHHHHhCHHHHHHHHH----CCCcEEEEeeccccHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999964    6899999999999999988743

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=99.35  E-value=2e-13  Score=129.16  Aligned_cols=67  Identities=13%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             EEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         346 VALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       346 vAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      -.+|+++.+++++++++++++ +++|+|+++|. +|++++++|+    ++|++||+|+|||||||||+.+++.
T Consensus        14 ~~~D~~~~~~a~~i~~~~~~~-~~~Kvg~~l~~-~G~~~v~~l~----~~~~~v~lD~K~~DI~nT~~~~v~~   80 (213)
T 1vqt_A           14 TPVLSLDMEDPIRFIDENGSF-EVVKVGHNLAI-HGKKIFDELA----KRNLKIILDLKFCDIPSTVERSIKS   80 (213)
T ss_dssp             EEEEECCSSSHHHHHHHHCCC-SEEEECHHHHT-TCTHHHHHHH----TTTCEEEEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhCCC-CEEEECHHHHh-hCHHHHHHHH----HCCCCEEEEeecccCchHHHHHHHH
Confidence            468999999999999999999 55999999999 9999999985    4799999999999999999987643

>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A*

Probab=99.32  E-value=1.1e-12  Score=132.70  Aligned_cols=61  Identities=5%  Similarity=-0.110  Sum_probs=52.0

Q ss_pred             HHHHHHhCCceeEEeEceeeeecCCHHHHHHHH---HHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093         357 LTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELT---ALAKQHEFLRSRNGWFSPILSSFSLRFR  417 (434)
Q Consensus       357 l~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~---~la~k~gf~iFlDlKf~DIpnTV~~a~~  417 (434)
                      +++++++++++|++|+|+++|.++|+++++.|+   +.++++|++||+|+|+|||||||+++.+
T Consensus       119 ~~ivdal~~~v~~vKvg~~lfea~G~~gi~~L~~~v~~lr~~g~~VflDlK~~DIgnTva~ya~  182 (353)
T 2ffc_A          119 FYIINETKEYALAYKMNFAFYLPYGSLGVDVLKNVFDYLHHLNVPTILDIKMNDIGNTVKHYRK  182 (353)
T ss_dssp             HHHHHHHGGGCSEEEEEGGGGSTTTHHHHHHHHHHHHHHHHHTCCEEEEEEECCCHHHHHHHHH
T ss_pred             HHHHHHhccccceeeccHHHHHhcCHHHHHHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHH
Confidence            468999999999999999999999999854443   2234569999999999999999998774

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=99.30  E-value=5.8e-14  Score=132.36  Aligned_cols=175  Identities=17%  Similarity=0.148  Sum_probs=106.3

Q ss_pred             ceecccchhhhccCCCccccccchhchhhhHHH-hhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhh
Q psy4093          79 DSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSI-IILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISD  156 (434)
Q Consensus        79 ~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si-~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~  156 (434)
                      -.+|+.|-..+...|.+.|.......  ....+ +|+|++|+|++..   +.+.+ ++|++|+|..++.++++.+++..+
T Consensus        32 vd~ie~g~~~~~~~G~~~i~~lr~~~--~~~~i~ld~~l~d~p~~~~---~~~~~aGad~i~vh~~~~~~~~~~~~~~~~  106 (218)
T 3jr2_A           32 VDVIEVGTILAFAEGMKAVSTLRHNH--PNHILVCDMKTTDGGAILS---RMAFEAGADWITVSAAAHIATIAACKKVAD  106 (218)
T ss_dssp             CSEEEECHHHHHHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHH---HHHHHHTCSEEEEETTSCHHHHHHHHHHHH
T ss_pred             ceEEEeCcHHHHhcCHHHHHHHHHhC--CCCcEEEEEeecccHHHHH---HHHHhcCCCEEEEecCCCHHHHHHHHHHHH
Confidence            46777775555455655543322110  11123 4999999998844   33444 899999999999889988888877


Q ss_pred             hhCCCCceE--EEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccch
Q psy4093         157 ELGEDRGVF--LIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSV  234 (434)
Q Consensus       157 ~~~~~~~v~--~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~  234 (434)
                      +.|  ..+.  +++.+|+   .....+.+.|+...            .           +.++...  +..|.+|++.+.
T Consensus       107 ~~g--~~~~~d~l~~~T~---~~~~~~~~~g~d~v------------~-----------~~~~~~~--~~~g~~~~~~~l  156 (218)
T 3jr2_A          107 ELN--GEIQIEIYGNWTM---QDAKAWVDLGITQA------------I-----------YHRSRDA--ELAGIGWTTDDL  156 (218)
T ss_dssp             HHT--CEEEEECCSSCCH---HHHHHHHHTTCCEE------------E-----------EECCHHH--HHHTCCSCHHHH
T ss_pred             HhC--CccceeeeecCCH---HHHHHHHHcCccce------------e-----------eeecccc--ccCCCcCCHHHH
Confidence            665  2222  2333222   11122222222110            0           0000000  123556666544


Q ss_pred             h----hcCCCc-eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         235 L----ASNPGL-LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       235 ~----~~~~~~-l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                      .    ..++++ +.++|||++.           +..+++ ++|||.+||||+|++++||.+++ ++++ .|+.
T Consensus       157 ~~i~~~~~~~~pi~v~GGI~~~-----------~~~~~~-~aGAd~vvvGsaI~~a~dp~~a~-~l~~-~~~~  215 (218)
T 3jr2_A          157 DKMRQLSALGIELSITGGIVPE-----------DIYLFE-GIKTKTFIAGRALAGAEGQQTAA-ALRE-QIDR  215 (218)
T ss_dssp             HHHHHHHHTTCEEEEESSCCGG-----------GGGGGT-TSCEEEEEESGGGSHHHHHHHHH-HHHH-HHHH
T ss_pred             HHHHHHhCCCCCEEEECCCCHH-----------HHHHHH-HcCCCEEEEchhhcCCCCHHHHH-HHHH-HHHh
Confidence            3    233455 7889999986           335788 99999999999999999999999 9987 5554

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=99.27  E-value=1.8e-12  Score=121.90  Aligned_cols=75  Identities=13%  Similarity=0.043  Sum_probs=68.2

Q ss_pred             CCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcC-CCeeeecCCCCcchhHHHHHhhc
Q psy4093         341 KSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQH-EFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       341 ~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~-gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      ++++|+|+|+++.+++++++++++++++++|+|..+|..+|+++++.|++   .+ |+.||+|+||||||||+..++..
T Consensus         3 ~~~~ilalD~~~~~~~~~~~~~~~~~v~~~kv~~~~f~~~G~~~i~~l~~---~~p~~~v~lD~kl~dip~t~~~~~~~   78 (216)
T 1q6o_A            3 LPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKA---LYPHKIVLADAKIADAGKILSRMCFE   78 (216)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHH---HCTTSEEEEEEEECSCHHHHHHHHHH
T ss_pred             cCCeEEEECCCCHHHHHHHHHHhcccCCEEEECHHHHHHhCHHHHHHHHH---hCCCCeEEEEEEecccHHHHHHHHHh
Confidence            47899999999999999999999999999999999999999999999964   23 79999999999999999876543

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=99.22  E-value=3.6e-12  Score=119.25  Aligned_cols=72  Identities=14%  Similarity=0.164  Sum_probs=66.6

Q ss_pred             cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093         343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFR  417 (434)
Q Consensus       343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~  417 (434)
                      +||+|+|+++.++++++++++++.++.+|+|..+|..+|++++++|++   .+|++||+|+|+||||||+++.++
T Consensus         1 ~lila~D~~~l~~~~~~~~~~~~~~~~~kv~~~~f~~~G~~~i~~lr~---~~~~~v~~D~kl~DI~~t~~~~v~   72 (208)
T 2czd_A            1 MIVLALDVYEGERAIKIAKSVKDYISMIKVNWPLILGSGVDIIRRLKE---ETGVEIIADLKLADIPNTNRLIAR   72 (208)
T ss_dssp             CEEEECCCCSHHHHHHHHHHHGGGCSEEEEEHHHHHHHCTTHHHHHHH---HHCCEEEEEEEECSCHHHHHHHHH
T ss_pred             CeEEEecCCCHHHHHHHHHHhcccccEEEecHHHHHhhCHHHHHHHHH---cCCCEEEEEeeeCchHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999864   238999999999999999988553

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=99.22  E-value=8.3e-11  Score=108.86  Aligned_cols=170  Identities=16%  Similarity=0.144  Sum_probs=99.1

Q ss_pred             eecccchhhhccCCCccccccchhchhh-hHHHh-hhcccCHHHHHHHHHHHhccccceEEEcccCCchhHHHHHHHhhh
Q psy4093          80 SVMHYSRKAFSKNGDDTIVPHFVMAQNV-LWSII-ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDE  157 (434)
Q Consensus        80 SVMhYg~~aFs~~g~~Ti~~~~~igqr~-~~si~-dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~~~  157 (434)
                      .++|.+-..|...|...|.....   .. ...++ |+|++|||+|....  ....++|++|+|+..|.++++.+++..++
T Consensus        27 ~~iev~~~~~~~~g~~~i~~l~~---~~~~~~i~~~l~~~di~~~~~~~--a~~~Gad~v~vh~~~~~~~~~~~~~~~~~  101 (207)
T 3ajx_A           27 DIIELGTPLIKAEGLSVITAVKK---AHPDKIVFADMKTMDAGELEADI--AFKAGADLVTVLGSADDSTIAGAVKAAQA  101 (207)
T ss_dssp             SEEEECHHHHHHHCTHHHHHHHH---HSTTSEEEEEEEECSCHHHHHHH--HHHTTCSEEEEETTSCHHHHHHHHHHHHH
T ss_pred             CEEEECcHHHHhhCHHHHHHHHH---hCCCCeEEEEEEecCccHHHHHH--HHhCCCCEEEEeccCChHHHHHHHHHHHH
Confidence            34566665555556555433221   11 22334 89999999994322  23347999999999998899888888766


Q ss_pred             hCCCCceEEEEEeCCCCCCCh--HHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHH-HHHHhhcCC-CCceEEeCccc
Q psy4093         158 LGEDRGVFLIAQLSCQGNLID--EKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQET-LKLAQSFPG-LIAGLVCQAPS  233 (434)
Q Consensus       158 ~~~~~~v~~v~~lss~~sl~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v-~~lA~~a~~-gv~GvVcs~~e  233 (434)
                      .|  .. ++++ +.++++..+  +.+.+.|..                        .+ +.++..... |.+ ++.  ..
T Consensus       102 ~g--~~-~gv~-~~s~~~p~~~~~~~~~~g~d------------------------~v~~~~~~~~~~~g~~-~~~--~~  150 (207)
T 3ajx_A          102 HN--KG-VVVD-LIGIEDKATRAQEVRALGAK------------------------FVEMHAGLDEQAKPGF-DLN--GL  150 (207)
T ss_dssp             HT--CE-EEEE-CTTCSSHHHHHHHHHHTTCS------------------------EEEEECCHHHHTSTTC-CTH--HH
T ss_pred             cC--Cc-eEEE-EecCCChHHHHHHHHHhCCC------------------------EEEEEecccccccCCC-chH--HH
Confidence            55  22 2333 333221111  111111100                        00 000000000 111 000  11


Q ss_pred             hh-hcC-CCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         234 VL-ASN-PGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       234 ~~-~~~-~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      .+ ..+ +-.+.++|||+++           |+.+++ ++|||++||||+|++++||.++++++++
T Consensus       151 i~~~~~~~~pi~v~GGI~~~-----------~~~~~~-~aGad~vvvGsaI~~~~dp~~~~~~~~~  204 (207)
T 3ajx_A          151 LAAGEKARVPFSVAGGVKVA-----------TIPAVQ-KAGAEVAVAGGAIYGAADPAAAAKELRA  204 (207)
T ss_dssp             HHHHHHHTSCEEEESSCCGG-----------GHHHHH-HTTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred             HHHhhCCCCCEEEECCcCHH-----------HHHHHH-HcCCCEEEEeeeccCCCCHHHHHHHHHH
Confidence            11 122 3457899999975           889999 9999999999999999999999999986

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=98.94  E-value=4.1e-10  Score=105.94  Aligned_cols=74  Identities=12%  Similarity=0.011  Sum_probs=66.9

Q ss_pred             CCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhc-CCCeeeecCCCCcchhHHHHHhh
Q psy4093         341 KSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQ-HEFLRSRNGWFSPILSSFSLRFR  417 (434)
Q Consensus       341 ~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k-~gf~iFlDlKf~DIpnTV~~a~~  417 (434)
                      +++||+|+|+++.++++++++++++++.++|+|..++..+|++++++|++   . .+++||+|+|+||+|+|+..++.
T Consensus         6 ~~~lilalD~~~~~~~~~~~~~~~~~vd~ie~g~~~~~~~G~~~i~~lr~---~~~~~~i~ld~~l~d~p~~~~~~~~   80 (218)
T 3jr2_A            6 KPMIQIALDQTNLTDAVAVASNVASYVDVIEVGTILAFAEGMKAVSTLRH---NHPNHILVCDMKTTDGGAILSRMAF   80 (218)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHGGGCSEEEECHHHHHHHTTHHHHHHHH---HCTTSEEEEEEEECSCHHHHHHHHH
T ss_pred             CCCeEEEeCCCCHHHHHHHHHHhcCCceEEEeCcHHHHhcCHHHHHHHHH---hCCCCcEEEEEeecccHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999964   2 27899999999999999766554

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=98.93  E-value=5.9e-10  Score=103.10  Aligned_cols=74  Identities=12%  Similarity=0.141  Sum_probs=66.8

Q ss_pred             cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcC-CCeeeecCCCCcchhH-HHHHhhcC
Q psy4093         343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQH-EFLRSRNGWFSPILSS-FSLRFRDD  419 (434)
Q Consensus       343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~-gf~iFlDlKf~DIpnT-V~~a~~~~  419 (434)
                      +||+|+|+++.++++++++++++.++++|+|..++..+|++++++|++   .. +++||+|+|+||||+| +..+.+.|
T Consensus         2 ~li~a~d~~~~~~~~~~~~~~~~~v~~iev~~~~~~~~g~~~i~~l~~---~~~~~~i~~~l~~~di~~~~~~~a~~~G   77 (207)
T 3ajx_A            2 KLQVAIDLLSTEAALELAGKVAEYVDIIELGTPLIKAEGLSVITAVKK---AHPDKIVFADMKTMDAGELEADIAFKAG   77 (207)
T ss_dssp             EEEEEECCSCHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHH---HSTTSEEEEEEEECSCHHHHHHHHHHTT
T ss_pred             eEEEEeCCCCHHHHHHHHHHhhccCCEEEECcHHHHhhCHHHHHHHHH---hCCCCeEEEEEEecCccHHHHHHHHhCC
Confidence            699999999999999999999999999999999999999999999864   34 8999999999999999 66666655

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=98.79  E-value=5.9e-09  Score=99.40  Aligned_cols=53  Identities=17%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             CceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHH
Q psy4093         240 GLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQ  305 (434)
Q Consensus       240 ~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~  305 (434)
                      -.+.|.+||++.           |+.+++ ++|||++||||+|++++||.++++++++ .++.+.+
T Consensus       170 ~~I~VdGGI~~~-----------t~~~~~-~aGAd~~VvGsaIf~a~dp~~~~~~l~~-~~~~~~~  222 (228)
T 3ovp_A          170 LDIEVDGGVGPD-----------TVHKCA-EAGANMIVSGSAIMRSEDPRSVINLLRN-VCSEAAQ  222 (228)
T ss_dssp             CEEEEESSCSTT-----------THHHHH-HHTCCEEEESHHHHTCSCHHHHHHHHHH-HHHHHHH
T ss_pred             CCEEEeCCcCHH-----------HHHHHH-HcCCCEEEEeHHHhCCCCHHHHHHHHHH-HHHHHHh
Confidence            346789999975           899999 9999999999999999999999999997 5666654

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=98.78  E-value=7e-09  Score=96.59  Aligned_cols=140  Identities=13%  Similarity=0.056  Sum_probs=85.3

Q ss_pred             hhcccCHHHHHHHHHHHhccccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHH
Q psy4093         113 ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLE  192 (434)
Q Consensus       113 dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~  192 (434)
                      ++|++|+++.+..+   ...++|++++|...+ +++..+.+..++.|  . .++++..++ +  ..+.+...  ..    
T Consensus        67 ~l~v~d~~~~i~~~---~~~gad~v~vh~~~~-~~~~~~~~~~~~~g--~-~i~~~~~~~-t--~~e~~~~~--~~----  130 (220)
T 2fli_A           67 HLMVVDPERYVEAF---AQAGADIMTIHTEST-RHIHGALQKIKAAG--M-KAGVVINPG-T--PATALEPL--LD----  130 (220)
T ss_dssp             EEESSSGGGGHHHH---HHHTCSEEEEEGGGC-SCHHHHHHHHHHTT--S-EEEEEECTT-S--CGGGGGGG--TT----
T ss_pred             EEeecCHHHHHHHH---HHcCCCEEEEccCcc-ccHHHHHHHHHHcC--C-cEEEEEcCC-C--CHHHHHHH--Hh----
Confidence            78999998866432   333799999999877 66666666665444  2 345554322 1  11112110  00    


Q ss_pred             HHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccc---hh----h---cCCCc-eEecCcccccCCCCCCCCc
Q psy4093         193 LKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPS---VL----A---SNPGL-LQLTPGIHLNQTGDNKGQQ  260 (434)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e---~~----~---~~~~~-l~vtPGIr~~~~~~~~~dQ  260 (434)
                                  ..    +.++-   .+.+ |.+|..+++..   ..    .   .+.++ +.+++||++.         
T Consensus       131 ------------~~----d~vl~---~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~---------  182 (220)
T 2fli_A          131 ------------LV----DQVLI---MTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNK---------  182 (220)
T ss_dssp             ------------TC----SEEEE---ESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTT---------
T ss_pred             ------------hC----CEEEE---EEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCCHH---------
Confidence                        00    01110   0111 34555444321   11    1   11233 4789999974         


Q ss_pred             cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHH
Q psy4093         261 YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMW  300 (434)
Q Consensus       261 ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~  300 (434)
                        ++.+++ ++|||.+||||+|++++||.++++++++ .|
T Consensus       183 --~~~~~~-~~Gad~vvvGsai~~~~d~~~a~~~~~~-~~  218 (220)
T 2fli_A          183 --TIRACY-EAGANVFVAGSYLFKASDLVSQVQTLRT-AL  218 (220)
T ss_dssp             --THHHHH-HHTCCEEEESHHHHTSSCHHHHHHHHHH-HH
T ss_pred             --HHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHHHH-Hh
Confidence              788999 8999999999999999999999999986 44

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=98.76  E-value=7.4e-08  Score=89.15  Aligned_cols=133  Identities=23%  Similarity=0.311  Sum_probs=86.5

Q ss_pred             hhcccCHHHH-HHHHHHHhccccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHH
Q psy4093         113 ILKLADIGAA-VGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITL  191 (434)
Q Consensus       113 dlKl~DI~nT-v~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~  191 (434)
                      |+|++|.+++ +..   ....++|++++|...+.++++.+.+.+++.|  ..  ++..+.++++.  .            
T Consensus        59 ~~~~~~~~~~~~~~---~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g--~~--~~v~~~~~~t~--~------------  117 (211)
T 3f4w_A           59 DAKIMDGGHFESQL---LFDAGADYVTVLGVTDVLTIQSCIRAAKEAG--KQ--VVVDMICVDDL--P------------  117 (211)
T ss_dssp             EEEECSCHHHHHHH---HHHTTCSEEEEETTSCHHHHHHHHHHHHHHT--CE--EEEECTTCSSH--H------------
T ss_pred             EEEeccchHHHHHH---HHhcCCCEEEEeCCCChhHHHHHHHHHHHcC--Ce--EEEEecCCCCH--H------------
Confidence            8999999987 332   3344899999999988788888888877665  22  33344443211  0            


Q ss_pred             HHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeC-----------ccc-hh---h-cCCCceEecCcccccCCCC
Q psy4093         192 ELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ-----------APS-VL---A-SNPGLLQLTPGIHLNQTGD  255 (434)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs-----------~~e-~~---~-~~~~~l~vtPGIr~~~~~~  255 (434)
                                         +. ++.+..+  |++.+-+.           ..+ .+   . ++.-.+.+.+||++.    
T Consensus       118 -------------------~~-~~~~~~~--g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~~~----  171 (211)
T 3f4w_A          118 -------------------AR-VRLLEEA--GADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQ----  171 (211)
T ss_dssp             -------------------HH-HHHHHHH--TCCEEEEECCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTT----
T ss_pred             -------------------HH-HHHHHHc--CCCEEEEcCCCcccccCCCCHHHHHHHHHHcCCCcEEEECCCCHH----
Confidence                               11 1122222  23432211           111 11   2 223446788999853    


Q ss_pred             CCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         256 NKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       256 ~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                             ++.+++ ++|||.+||||+|++++||.++++++++ .++
T Consensus       172 -------~~~~~~-~~Gad~vvvGsai~~~~d~~~~~~~l~~-~~~  208 (211)
T 3f4w_A          172 -------TVKDYA-LLGPDVVIVGSAITHAADPAGEARKISQ-VLL  208 (211)
T ss_dssp             -------THHHHH-TTCCSEEEECHHHHTCSSHHHHHHHHHH-HHH
T ss_pred             -------HHHHHH-HcCCCEEEECHHHcCCCCHHHHHHHHHH-HHh
Confidence                   778999 9999999999999999999999999987 443

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=98.44  E-value=1.2e-07  Score=87.69  Aligned_cols=76  Identities=9%  Similarity=-0.008  Sum_probs=67.3

Q ss_pred             cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhH-HHHHhhcCc
Q psy4093         343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSS-FSLRFRDDK  420 (434)
Q Consensus       343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnT-V~~a~~~~~  420 (434)
                      +||+|+|+++.++++++++++++++.++++|..++..+|+++++++++.  --+++|+.|+|++|++++ +..+...|=
T Consensus         2 ~li~a~D~~~~~~~~~~~~~~~~~~diie~G~p~~~~~g~~~i~~ir~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Ga   78 (211)
T 3f4w_A            2 KLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEK--YPHKEVLADAKIMDGGHFESQLLFDAGA   78 (211)
T ss_dssp             EEEEEECSCCHHHHHHHHHHHGGGCSEEEECHHHHHHHTTHHHHHHHHH--CTTSEEEEEEEECSCHHHHHHHHHHTTC
T ss_pred             cEEEEeCCCCHHHHHHHHHHhhcCccEEEeCcHHHHhccHHHHHHHHHh--CCCCEEEEEEEeccchHHHHHHHHhcCC
Confidence            5999999999999999999999999999999988778899999998642  137899999999999999 888887774

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=98.29  E-value=7.3e-07  Score=83.82  Aligned_cols=44  Identities=30%  Similarity=0.393  Sum_probs=39.9

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +.+++||++.           ++.+++ ++|||.+|||++|++++||.++++++++
T Consensus       182 i~v~GGI~~~-----------n~~~~~-~aGad~vvvgSaI~~a~dp~~a~~~l~~  225 (230)
T 1rpx_A          182 IEVDGGVGPK-----------NAYKVI-EAGANALVAGSAVFGAPDYAEAIKGIKT  225 (230)
T ss_dssp             EEEESSCCTT-----------THHHHH-HHTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred             EEEECCCCHH-----------HHHHHH-HcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence            4789999975           788999 8999999999999999999999999875

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=98.14  E-value=8.9e-06  Score=78.43  Aligned_cols=48  Identities=13%  Similarity=0.293  Sum_probs=42.4

Q ss_pred             CCCc-eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         238 NPGL-LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       238 ~~~~-l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +.++ +.|.+||+++           |+.+++ ++|||.+|+||+|++++||.++++++++
T Consensus       193 ~~~~~I~VDGGI~~~-----------ti~~~~-~aGAD~~V~GSaIf~a~dp~~~i~~l~~  241 (246)
T 3inp_A          193 DRDILLEIDGGVNPY-----------NIAEIA-VCGVNAFVAGSAIFNSDSYKQTIDKMRD  241 (246)
T ss_dssp             TSCCEEEEESSCCTT-----------THHHHH-TTTCCEEEESHHHHTSSCHHHHHHHHHH
T ss_pred             CCCeeEEEECCcCHH-----------HHHHHH-HcCCCEEEEehHHhCCCCHHHHHHHHHH
Confidence            4455 4589999975           889999 9999999999999999999999999887

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=97.92  E-value=8e-06  Score=77.76  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=41.2

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                      +.|.+||.++           |..+++ ++|||.+|+||+|++++||.++++++++ .++
T Consensus       176 I~VdGGI~~~-----------ti~~~~-~aGAd~~V~GsaIf~~~d~~~~i~~l~~-~~~  222 (227)
T 1tqx_A          176 IQVDGGLNIE-----------TTEISA-SHGANIIVAGTSIFNAEDPKYVIDTMRV-SVQ  222 (227)
T ss_dssp             EEEESSCCHH-----------HHHHHH-HHTCCEEEESHHHHTCSSHHHHHHHHHH-HHH
T ss_pred             EEEECCCCHH-----------HHHHHH-HcCCCEEEEeHHHhCCCCHHHHHHHHHH-HHH
Confidence            4668999975           778999 9999999999999999999999999986 443

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=97.72  E-value=0.00016  Score=68.08  Aligned_cols=47  Identities=21%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                      +.+..||.++           +..+++ ++|+|.+|||+.|++++||.++++++++ .|+
T Consensus       176 i~v~GGI~~~-----------ni~~~~-~aGaD~vvvGsai~~~~d~~~~~~~l~~-~~~  222 (228)
T 1h1y_A          176 IEVDGGLGPS-----------TIDVAA-SAGANCIVAGSSIFGAAEPGEVISALRK-SVE  222 (228)
T ss_dssp             EEEESSCSTT-----------THHHHH-HHTCCEEEESHHHHTSSCHHHHHHHHHH-HHH
T ss_pred             EEEECCcCHH-----------HHHHHH-HcCCCEEEECHHHHCCCCHHHHHHHHHH-HHH
Confidence            5678999975           678888 8999999999999999999999999986 554

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=97.45  E-value=0.00084  Score=63.87  Aligned_cols=44  Identities=20%  Similarity=0.262  Sum_probs=39.0

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeC-CcccCCCC-HHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVG-RGITQAPD-PVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVG-R~It~A~D-P~~aa~~i~~  297 (434)
                      +-|.-||.+.           |..+++ ++|||.+|+| ++|++++| |.++++++++
T Consensus       170 I~VdGGI~~~-----------~~~~~~-~aGAd~~V~G~saif~~~d~~~~~~~~l~~  215 (231)
T 3ctl_A          170 IEVDGSCNQA-----------TYEKLM-AAGADVFIVGTSGLFNHAENIDEAWRIMTA  215 (231)
T ss_dssp             EEEESCCSTT-----------THHHHH-HHTCCEEEECTTTTGGGCSSHHHHHHHHHH
T ss_pred             EEEECCcCHH-----------HHHHHH-HcCCCEEEEccHHHhCCCCcHHHHHHHHHH
Confidence            4567888865           778999 9999999999 99999999 9999999986

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=97.00  E-value=0.002  Score=60.84  Aligned_cols=44  Identities=25%  Similarity=0.378  Sum_probs=37.8

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +.+--||...           |..+++ ++|||.+|||+.|++++||.++++++++
T Consensus       176 I~v~GGI~~~-----------~~~~~~-~aGad~vvvGSai~~a~d~~~~~~~l~~  219 (230)
T 1tqj_A          176 IEVDGGLKPN-----------NTWQVL-EAGANAIVAGSAVFNAPNYAEAIAGVRN  219 (230)
T ss_dssp             EEEESSCCTT-----------TTHHHH-HHTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred             EEEECCcCHH-----------HHHHHH-HcCCCEEEECHHHHCCCCHHHHHHHHHH
Confidence            4556788864           568888 8999999999999999999999999875

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=96.91  E-value=0.002  Score=61.53  Aligned_cols=43  Identities=12%  Similarity=0.127  Sum_probs=37.5

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHH--cCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITL--RGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~--~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +.+.-||.+.           |..+++ +  +|||.+|+|++|+++ ||.++++++++
T Consensus       190 I~vdGGI~~~-----------~~~~~~-~~~aGad~~VvGSaIf~~-d~~~~~~~l~~  234 (237)
T 3cu2_A          190 INIDGSMTLE-----------LAKYFK-QGTHQIDWLVSGSALFSG-ELKTNLKVWKS  234 (237)
T ss_dssp             EEEESSCCHH-----------HHHHHH-HSSSCCCCEEECGGGGSS-CHHHHHHHHHH
T ss_pred             EEEECCcCHH-----------HHHHHH-HhCCCCcEEEEeeHHhCC-CHHHHHHHHHH
Confidence            4567888865           667888 9  999999999999999 99999999986

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=96.80  E-value=0.0072  Score=59.66  Aligned_cols=48  Identities=19%  Similarity=0.136  Sum_probs=35.5

Q ss_pred             cCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCC----CCHHHHH
Q psy4093         237 SNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQA----PDPVEAA  292 (434)
Q Consensus       237 ~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A----~DP~~aa  292 (434)
                      ++-.++.+.-|+.+.       +=..+..+|+ ++|++-++|||.|+++    +||.+++
T Consensus       220 ~~~P~Vv~aGG~~~~-------~~~~~~~~a~-~aGa~Gv~vGRaI~q~~~~~~dp~~~~  271 (304)
T 1to3_A          220 INMPWVILSSGVDEK-------LFPRAVRVAM-EAGASGFLAGRAVWSSVIGLPDTELML  271 (304)
T ss_dssp             CCSCEEECCTTSCTT-------THHHHHHHHH-HTTCCEEEESHHHHGGGTTCSCHHHHH
T ss_pred             CCCCeEEEecCCCHH-------HHHHHHHHHH-HcCCeEEEEehHHhCccccCCCHHHHH
Confidence            333346667777321       1123468889 8999999999999999    9999998

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=96.72  E-value=0.014  Score=57.50  Aligned_cols=34  Identities=26%  Similarity=0.218  Sum_probs=30.8

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      ...+|+ ++||+.++|||.|++++||.++++.+++
T Consensus       242 ~v~~ai-~aGA~Gv~vGRnI~q~~dp~~~~~al~~  275 (295)
T 3glc_A          242 MCWQAI-DQGASGVDMGRNIFQSDHPVAMMKAVQA  275 (295)
T ss_dssp             HHHHHH-HTTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred             HHHHHH-HhCCeEEEeHHHHhcCcCHHHHHHHHHH
Confidence            457889 8999999999999999999999998875

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=96.28  E-value=0.0035  Score=57.74  Aligned_cols=75  Identities=7%  Similarity=-0.032  Sum_probs=61.0

Q ss_pred             CcEEEEecCCCHHHHHHHHHHhCCceeEEeE--ce-eeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         342 SNLCVALDVTQAKDLLTLTRQLGPHIAVLKT--HS-DAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       342 s~LivAlD~~~~~~al~la~~lgp~i~~lKv--g~-dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      .++|+|+|+.+..+..+.+.+.|.....+++  |. ..+..+|++.+++|++   ..++.++.|++.+|+++.+..+...
T Consensus         7 ~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~---~~~~~~~v~l~v~d~~~~i~~~~~~   83 (220)
T 2fli_A            7 APSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRK---HSKLVFDCHLMVVDPERYVEAFAQA   83 (220)
T ss_dssp             EEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHT---TCCSEEEEEEESSSGGGGHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHH---hCCCCEEEEEeecCHHHHHHHHHHc
Confidence            3578899999999999999999886655665  55 4566778999998863   3388999999999999999888776


Q ss_pred             C
Q psy4093         419 D  419 (434)
Q Consensus       419 ~  419 (434)
                      |
T Consensus        84 g   84 (220)
T 2fli_A           84 G   84 (220)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=95.84  E-value=0.063  Score=48.78  Aligned_cols=46  Identities=20%  Similarity=0.210  Sum_probs=37.7

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCC---HHHHHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPD---PVEAARRYKEVMWE  301 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~D---P~~aa~~i~~~~~~  301 (434)
                      ++.+-||.+.           +..+++ ++|||.++||+.|+. +|   |.++++++++ .|+
T Consensus       153 via~GGI~~~-----------~~~~~~-~~Ga~~v~vGs~i~~-~d~~~~~~~~~~~~~-~~~  201 (205)
T 1wa3_A          153 FVPTGGVNLD-----------NVCEWF-KAGVLAVGVGSALVK-GTPDEVREKAKAFVE-KIR  201 (205)
T ss_dssp             EEEBSSCCTT-----------THHHHH-HHTCSCEEECHHHHC-SCHHHHHHHHHHHHH-HHH
T ss_pred             EEEcCCCCHH-----------HHHHHH-HCCCCEEEECccccC-CCHHHHHHHHHHHHH-HHH
Confidence            4556788753           668999 999999999999999 99   9988888886 444

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=95.71  E-value=0.039  Score=53.15  Aligned_cols=75  Identities=17%  Similarity=0.160  Sum_probs=50.8

Q ss_pred             HHHHhhcCCCCceEEeCcc---ch-h----hcCCC-ceEecCcccccCCCCCCCCc-cCCHHHHHHHcCCCEEEeCCccc
Q psy4093         214 LKLAQSFPGLIAGLVCQAP---SV-L----ASNPG-LLQLTPGIHLNQTGDNKGQQ-YNGPTDVITLRGADLGVVGRGIT  283 (434)
Q Consensus       214 ~~lA~~a~~gv~GvVcs~~---e~-~----~~~~~-~l~vtPGIr~~~~~~~~~dQ-~~TP~~Ai~~~GAD~IVVGR~It  283 (434)
                      .++|..+  |.|.|-.+..   |. +    .+ +. -+....||+..    .. ++ .....+++ ++||+.+.+||.|+
T Consensus       165 ~~~a~~~--GAD~vkt~~~~~~e~~~~~~~~~-~~~pV~asGGi~~~----~~-~~~l~~i~~~~-~aGA~GvsvgraI~  235 (263)
T 1w8s_A          165 ARIALEL--GADAMKIKYTGDPKTFSWAVKVA-GKVPVLMSGGPKTK----TE-EDFLKQVEGVL-EAGALGIAVGRNVW  235 (263)
T ss_dssp             HHHHHHH--TCSEEEEECCSSHHHHHHHHHHT-TTSCEEEECCSCCS----SH-HHHHHHHHHHH-HTTCCEEEESHHHH
T ss_pred             HHHHHHc--CCCEEEEcCCCCHHHHHHHHHhC-CCCeEEEEeCCCCC----CH-HHHHHHHHHHH-HcCCeEEEEehhhc
Confidence            4445444  6887766543   11 1    23 33 35667888742    00 11 23567778 89999999999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy4093         284 QAPDPVEAARRYKE  297 (434)
Q Consensus       284 ~A~DP~~aa~~i~~  297 (434)
                      +++||.++++++++
T Consensus       236 ~~~dp~~~~~~l~~  249 (263)
T 1w8s_A          236 QRRDALKFARALAE  249 (263)
T ss_dssp             TSTTHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHH
Confidence            99999999999986

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=95.39  E-value=0.1  Score=49.56  Aligned_cols=81  Identities=19%  Similarity=0.146  Sum_probs=52.9

Q ss_pred             HHHHHHhhcCCCCceEEeCcc---ch-h---hcCCCceEecCcccccCCCCCCCCc-cCCHHHHHHHcCCCEEEeCCccc
Q psy4093         212 ETLKLAQSFPGLIAGLVCQAP---SV-L---ASNPGLLQLTPGIHLNQTGDNKGQQ-YNGPTDVITLRGADLGVVGRGIT  283 (434)
Q Consensus       212 ~v~~lA~~a~~gv~GvVcs~~---e~-~---~~~~~~l~vtPGIr~~~~~~~~~dQ-~~TP~~Ai~~~GAD~IVVGR~It  283 (434)
                      .+.+.|..+  |+|.+..+..   +. .   ...+-.++...||+..    + .++ .....+++ +.|+|.+.|||.|+
T Consensus       170 ~~a~~a~~~--Gad~i~~~~~~~~~~l~~i~~~~~ipvva~GGi~~~----~-~~~~~~~~~~~~-~~Ga~gv~vg~~i~  241 (273)
T 2qjg_A          170 HAARLGAEL--GADIVKTSYTGDIDSFRDVVKGCPAPVVVAGGPKTN----T-DEEFLQMIKDAM-EAGAAGVAVGRNIF  241 (273)
T ss_dssp             HHHHHHHHT--TCSEEEECCCSSHHHHHHHHHHCSSCEEEECCSCCS----S-HHHHHHHHHHHH-HHTCSEEECCHHHH
T ss_pred             HHHHHHHHc--CCCEEEECCCCCHHHHHHHHHhCCCCEEEEeCCCCC----C-HHHHHHHHHHHH-HcCCcEEEeeHHhh
Confidence            344555554  6887766631   11 1   1223345668888853    0 011 12267778 89999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy4093         284 QAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       284 ~A~DP~~aa~~i~~~~~~  301 (434)
                      +++||.++++++++ .|.
T Consensus       242 ~~~~~~~~~~~l~~-~~~  258 (273)
T 2qjg_A          242 QHDDVVGITRAVCK-IVH  258 (273)
T ss_dssp             TSSSHHHHHHHHHH-HHH
T ss_pred             CCCCHHHHHHHHHH-HHh
Confidence            99999999999886 553

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=94.36  E-value=0.028  Score=54.92  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=32.2

Q ss_pred             HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093         265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY  303 (434)
Q Consensus       265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~  303 (434)
                      .+++ +.|+|-+.|||+|+.|+||.+.+++|++ .++.|
T Consensus       216 ~~~l-e~GaDGVmVGrAI~~s~DP~~~Akafv~-Av~~~  252 (291)
T 3o07_A          216 ALLM-QLGCDGVFVGSGIFKSSNPVRLATAVVE-ATTHF  252 (291)
T ss_dssp             HHHH-HTTCSCEEECGGGGGSSCHHHHHHHHHH-HHHTT
T ss_pred             HHHH-HhCCCEEEEchHHhCCCCHHHHHHHHHH-HHHhc
Confidence            4456 7899999999999999999999999997 66666

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=94.15  E-value=0.061  Score=49.25  Aligned_cols=51  Identities=14%  Similarity=0.150  Sum_probs=41.2

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCC----CCHHHHHHHHHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQA----PDPVEAARRYKEVMWEAYEQ  305 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A----~DP~~aa~~i~~~~~~a~~~  305 (434)
                      ++..-||.+.           +..+++ ++|+|.++||+.|+.+    +||.++++++++ .|++..|
T Consensus       151 via~GGI~~~-----------~i~~~~-~~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~~-~~~~~~~  205 (212)
T 2v82_A          151 VFAVGGVTPE-----------NLAQWI-DAGCAGAGLGSDLYRAGQSVERTAQQAAAFVK-AYREAVQ  205 (212)
T ss_dssp             EEEESSCCTT-----------THHHHH-HHTCSEEEECTTTCCTTCCHHHHHHHHHHHHH-HHHHHHH
T ss_pred             EEEeCCCCHH-----------HHHHHH-HcCCCEEEEChHHhCCCCCHHHHHHHHHHHHH-HHHHHHH
Confidence            4556777743           568888 8999999999999998    799999999987 6766554

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=93.46  E-value=0.081  Score=48.62  Aligned_cols=49  Identities=35%  Similarity=0.469  Sum_probs=39.6

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY  303 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~  303 (434)
                      +++.-||.+.           +..+++ +.|+|.++||+.|..++||.++++++++ .++.+
T Consensus       175 via~GGI~~~-----------nv~~~~-~~Ga~gv~vgs~i~~~~d~~~~~~~~~~-~~~~~  223 (227)
T 2tps_A          175 IVGIGGITID-----------NAAPVI-QAGADGVSMISAISQAEDPESAARKFRE-EIQTY  223 (227)
T ss_dssp             EEEESSCCTT-----------TSHHHH-HTTCSEEEESHHHHTSSCHHHHHHHHHH-HHHHH
T ss_pred             EEEEcCCCHH-----------HHHHHH-HcCCCEEEEhHHhhcCCCHHHHHHHHHH-HHHhc
Confidence            4667788753           457888 8999999999999999999999999986 55443

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=93.07  E-value=0.068  Score=51.02  Aligned_cols=37  Identities=35%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                      +..+++ ++|||.+.||+.|+.++||.++++++++ .|+
T Consensus       204 ni~~~~-~aGa~gvav~sai~~a~dp~~a~~~l~~-~~~  240 (243)
T 3o63_A          204 RLPAVL-DAGARRIVVVRAITSADDPRAAAEQLRS-ALT  240 (243)
T ss_dssp             THHHHH-HTTCCCEEESHHHHTCSSHHHHHHHHHH-HHH
T ss_pred             HHHHHH-HcCCCEEEEeHHHhCCCCHHHHHHHHHH-HHH
Confidence            567888 9999999999999999999999999987 553

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=92.99  E-value=0.7  Score=44.66  Aligned_cols=32  Identities=28%  Similarity=0.334  Sum_probs=28.5

Q ss_pred             HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      .++. +.|+|-++||+.|++++||.++++++.+
T Consensus       229 ~~l~-~~GadgvlVGsal~~a~dp~~~~~~l~~  260 (272)
T 3qja_A          229 LAYA-GAGADAVLVGEGLVTSGDPRAAVADLVT  260 (272)
T ss_dssp             HHHH-HTTCSEEEECHHHHTCSCHHHHHHHHHT
T ss_pred             HHHH-HcCCCEEEEcHHHhCCCCHHHHHHHHHh
Confidence            3456 7899999999999999999999998876

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=92.98  E-value=0.11  Score=47.07  Aligned_cols=47  Identities=21%  Similarity=0.246  Sum_probs=38.9

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE  301 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~  301 (434)
                      +++.-||.+.           +..+++ +.|+|.++||+.|+.++||.+.++++++ .++
T Consensus       165 via~GGI~~~-----------nv~~~~-~~Ga~gv~vgs~i~~~~d~~~~~~~~~~-~~~  211 (215)
T 1xi3_A          165 VVAIGGINKD-----------NAREVL-KTGVDGIAVISAVMGAEDVRKATEELRK-IVE  211 (215)
T ss_dssp             EEEESSCCTT-----------THHHHH-TTTCSEEEESHHHHTSSSHHHHHHHHHH-HHH
T ss_pred             EEEECCcCHH-----------HHHHHH-HcCCCEEEEhHHHhCCCCHHHHHHHHHH-HHh
Confidence            4667788853           567888 8999999999999999999999998886 444

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=92.82  E-value=0.076  Score=51.41  Aligned_cols=34  Identities=29%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +..+++ ++|||.++||+.|++++||.++++++++
T Consensus       223 ~i~~~~-~aGadgvvvGsai~~~~dp~~~~~~l~~  256 (297)
T 2zbt_A          223 DAALMM-HLGMDGVFVGSGIFKSGDPRKRARAIVR  256 (297)
T ss_dssp             HHHHHH-HTTCSEEEECGGGGGSSCHHHHHHHHHH
T ss_pred             HHHHHH-HcCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence            446667 8999999999999999999999988876

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=92.05  E-value=0.12  Score=49.57  Aligned_cols=37  Identities=32%  Similarity=0.334  Sum_probs=31.6

Q ss_pred             HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                      ..+++ +.|||.++||+.|.++.||.++++++++ .+++
T Consensus       193 a~~~~-~~GAdgViVGSAi~~a~dp~~~~~~l~~-~v~~  229 (264)
T 1xm3_A          193 AAYAM-ELGADGVLLNTAVSGADDPVKMARAMKL-AVEA  229 (264)
T ss_dssp             HHHHH-HTTCSEEEESHHHHTSSSHHHHHHHHHH-HHHH
T ss_pred             HHHHH-HcCCCEEEEcHHHhCCCCHHHHHHHHHH-HHHH
Confidence            35566 8999999999999999999999999997 4544

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=92.02  E-value=0.16  Score=46.83  Aligned_cols=44  Identities=36%  Similarity=0.443  Sum_probs=37.7

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      ++..-||.+.           +..+++ +.|||.++||++|..++||.++++++++
T Consensus       167 via~GGI~~~-----------nv~~~~-~~Ga~gv~vgs~i~~~~d~~~~~~~~~~  210 (221)
T 1yad_A          167 VIAIGGMTPD-----------RLRDVK-QAGADGIAVMSGIFSSAEPLEAARRYSR  210 (221)
T ss_dssp             EEEESSCCGG-----------GHHHHH-HTTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred             EEEECCCCHH-----------HHHHHH-HcCCCEEEEhHHhhCCCCHHHHHHHHHH
Confidence            4667788654           568889 8999999999999999999999998886

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=91.60  E-value=0.6  Score=45.14  Aligned_cols=40  Identities=25%  Similarity=0.277  Sum_probs=33.7

Q ss_pred             CCHHHH---HHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093         262 NGPTDV---ITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY  303 (434)
Q Consensus       262 ~TP~~A---i~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~  303 (434)
                      .||++|   + +.|||-++||-.|+.|+||...++++++ ..+|-
T Consensus       197 ~TPsDAa~Am-eLGAdgVlVgSAI~~a~dP~~ma~af~~-Av~aG  239 (265)
T 1wv2_A          197 GTASDAAIAM-ELGCEAVLMNTAIAHAKDPVMMAEAMKH-AIVAG  239 (265)
T ss_dssp             CSHHHHHHHH-HHTCSEEEESHHHHTSSSHHHHHHHHHH-HHHHH
T ss_pred             CCHHHHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHHHH-HHHHH
Confidence            577765   6 7899999999999999999999999987 44443

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=91.02  E-value=1  Score=43.17  Aligned_cols=125  Identities=17%  Similarity=0.159  Sum_probs=72.7

Q ss_pred             HHhccccceEEEcccC-CchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHH---hh-cchhhHHHHHhhhccCCC
Q psy4093         128 RLIGEWAHLVTVHSIA-GPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYT---QV-GFKAITLELKKYLCNNQV  202 (434)
Q Consensus       128 ~~~~~~~d~vTvH~~~-G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~---~~-g~~~~~~~~~~~~~~~~~  202 (434)
                      +....|+|++.+-+.. ..+.++.+.+.+++.|    +.++++..+     .++..   ++ |...       +|+|++.
T Consensus       118 ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lG----l~~lvEv~~-----~eE~~~A~~l~g~~i-------IGinnr~  181 (251)
T 1i4n_A          118 LASSVGADAILIIARILTAEQIKEIYEAAEELG----MDSLVEVHS-----REDLEKVFSVIRPKI-------IGINTRD  181 (251)
T ss_dssp             HHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTT----CEEEEEECS-----HHHHHHHHTTCCCSE-------EEEECBC
T ss_pred             HHHHcCCCEEEEecccCCHHHHHHHHHHHHHcC----CeEEEEeCC-----HHHHHHHHhcCCCCE-------EEEeCcc
Confidence            3344479998877665 6677888888877654    556777665     22221   22 2221       3444433


Q ss_pred             CCCCCchHHHHHHHHhhcCCCCceEEeCccchhhcCCCceEe-cCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCc
Q psy4093         203 LPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQL-TPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRG  281 (434)
Q Consensus       203 ~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~~~~~~~l~v-tPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~  281 (434)
                      ......+.+...+++....                 ++.+.| --||.-.          .+...+. +. +|-++||.+
T Consensus       182 l~t~~~d~~~~~~l~~~ip-----------------~~~~vIaEsGI~t~----------edv~~~~-~~-a~avLVG~a  232 (251)
T 1i4n_A          182 LDTFEIKKNVLWELLPLVP-----------------DDTVVVAESGIKDP----------RELKDLR-GK-VNAVLVGTS  232 (251)
T ss_dssp             TTTCCBCTTHHHHHGGGSC-----------------TTSEEEEESCCCCG----------GGHHHHT-TT-CSEEEECHH
T ss_pred             cccCCCCHHHHHHHHHhCC-----------------CCCEEEEeCCCCCH----------HHHHHHH-Hh-CCEEEEcHH
Confidence            3223333334444444321                 222222 2455411          1345566 77 999999999


Q ss_pred             ccCCCCHHHHHHHHHH
Q psy4093         282 ITQAPDPVEAARRYKE  297 (434)
Q Consensus       282 It~A~DP~~aa~~i~~  297 (434)
                      |+.++||.++.+++..
T Consensus       233 imr~~d~~~~~~~l~~  248 (251)
T 1i4n_A          233 IMKAENPRRFLEEMRA  248 (251)
T ss_dssp             HHHCSSHHHHHHHHHH
T ss_pred             HcCCcCHHHHHHHHHh
Confidence            9999999999998875

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=90.69  E-value=0.11  Score=55.13  Aligned_cols=129  Identities=12%  Similarity=0.057  Sum_probs=73.2

Q ss_pred             CHHHHHHH--------cCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhhhhhccchhhHHHH
Q psy4093         263 GPTDVITL--------RGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISSTLL  334 (434)
Q Consensus       263 TP~~Ai~~--------~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~  334 (434)
                      +..+++ +        .|+|.+.|++.|++++||.++++++++ .|+..........|+......     ....+. .++
T Consensus       186 ni~~v~-~~~~~~g~~~GadgvAVvsaI~~a~dp~~a~~~l~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~  257 (540)
T 3nl6_A          186 NIERVL-YQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRG-LIDKTDYKFVNIGLSTKNSLT-----TTDEIQ-SII  257 (540)
T ss_dssp             THHHHH-HHCBCTTSSCBCSCEEESHHHHTCTTHHHHHHHHHH-HHHCCBCCCSSSBCCCCCSCC-----CHHHHH-HHH
T ss_pred             HHHHHH-HhhcccccccCceEEEEeHHHhcCCCHHHHHHHHHH-HHHhCCCcccccccccccchh-----HHHHHH-HHH
Confidence            456777 6        799999999999999999999999886 554311000000011100000     001112 122


Q ss_pred             HHhhhcCCcEEEE---------------------ecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHh
Q psy4093         335 DIMVKKKSNLCVA---------------------LDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAK  393 (434)
Q Consensus       335 ~~m~~k~s~LivA---------------------lD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~  393 (434)
                      +-+.++++ |+--                     +=....+|+.+|++.- -...++++|+  ..+  .+.+....+.++
T Consensus       258 ~~vr~~~P-Lvh~iTN~V~~n~~AN~~La~GasPiM~~~~~E~~e~~~~~-~~alvin~G~--l~~--~~~~~~a~~~a~  331 (540)
T 3nl6_A          258 SNTLKARP-LVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIP-HATLLLNTGS--VAP--PEMLKAAIRAYN  331 (540)
T ss_dssp             HHHHHHCC-EEEEECCHHHHHHHHHHHHHTTSEEECCCCHHHHHHHTTST-TCEEEEESSC--SCC--HHHHHHHHHHHH
T ss_pred             HHHHhcCC-eEEEccccchHHHHHHHHHHcCCChhhcCCHHHHHHHHhcc-CCeEEEeCCC--CCH--HHHHHHHHHHHH
Confidence            22333322 2111                     1124577888777731 3566788886  344  666666666677


Q ss_pred             cCCCeeeecCCC
Q psy4093         394 QHEFLRSRNGWF  405 (434)
Q Consensus       394 k~gf~iFlDlKf  405 (434)
                      +++.+|.+|=--
T Consensus       332 ~~~~PvVlDPVg  343 (540)
T 3nl6_A          332 DVKRPIVFDPVG  343 (540)
T ss_dssp             TTTCCEEEECTT
T ss_pred             HcCCCEEEChHH
Confidence            889999999643

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=88.49  E-value=1.8  Score=41.35  Aligned_cols=20  Identities=20%  Similarity=0.336  Sum_probs=16.5

Q ss_pred             HHHHHHcCCCEEEeCCcccCC
Q psy4093         265 TDVITLRGADLGVVGRGITQA  285 (434)
Q Consensus       265 ~~Ai~~~GAD~IVVGR~It~A  285 (434)
                      .+++ .+|||.+|||..|++.
T Consensus       221 ~~~~-~agAD~vVVGSai~~~  240 (268)
T 1qop_A          221 SAAV-RAGAAGAISGSAIVKI  240 (268)
T ss_dssp             HHHH-HTTCSEEEECHHHHHH
T ss_pred             HHHH-HcCCCEEEEChHHhhh
Confidence            3445 6899999999999875

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=87.59  E-value=0.55  Score=45.53  Aligned_cols=37  Identities=30%  Similarity=0.361  Sum_probs=31.5

Q ss_pred             HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093         265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY  303 (434)
Q Consensus       265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~  303 (434)
                      ..|+ +.|||-++||-+|+.|+||...++++++ ..+|-
T Consensus       194 a~Am-eLGAdgVlVgSAI~~a~dP~~ma~af~~-Av~ag  230 (268)
T 2htm_A          194 AEVM-ELGLDAVLVNTAIAEAQDPPAMAEAFRL-AVEAG  230 (268)
T ss_dssp             HHHH-HTTCCEEEESHHHHTSSSHHHHHHHHHH-HHHHH
T ss_pred             HHHH-HcCCCEEEEChHHhCCCCHHHHHHHHHH-HHHHH
Confidence            4457 8999999999999999999999999998 44443

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=87.21  E-value=2.2  Score=41.23  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=29.1

Q ss_pred             CHHHH---HHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         263 GPTDV---ITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       263 TP~~A---i~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      ||+++   . +.|+|-++||.+|+.++||.++.+++..
T Consensus       231 t~edv~~l~-~~Ga~gvLVG~almr~~d~~~~~~~l~~  267 (272)
T 3tsm_A          231 THEDCLRLE-KSGIGTFLIGESLMRQHDVAAATRALLT  267 (272)
T ss_dssp             SHHHHHHHH-TTTCCEEEECHHHHTSSCHHHHHHHHHH
T ss_pred             CHHHHHHHH-HcCCCEEEEcHHHcCCcCHHHHHHHHHh
Confidence            55554   5 6899999999999999999999988764

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=86.43  E-value=0.43  Score=46.42  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHH
Q psy4093         264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYE  304 (434)
Q Consensus       264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~  304 (434)
                      ..+++ +.|||.++|||.|+.++||.++++++++ .+..|.
T Consensus       224 ~~~~~-~~GadgV~vGsai~~~~~p~~~~~~l~~-~~~~~~  262 (305)
T 2nv1_A          224 AALMM-QLGADGVFVGSGIFKSDNPAKFAKAIVE-ATTHFT  262 (305)
T ss_dssp             HHHHH-HTTCSCEEECGGGGGSSCHHHHHHHHHH-HHHTTT
T ss_pred             HHHHH-HcCCCEEEEcHHHHcCCCHHHHHHHHHH-HHHHhc
Confidence            35567 7899999999999999999999999887 554443

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=85.97  E-value=0.43  Score=47.11  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=32.1

Q ss_pred             cCCHHHHHHH-cCCCEEEeCCcccC--CCCHHHHHHHHHH
Q psy4093         261 YNGPTDVITL-RGADLGVVGRGITQ--APDPVEAARRYKE  297 (434)
Q Consensus       261 ~~TP~~Ai~~-~GAD~IVVGR~It~--A~DP~~aa~~i~~  297 (434)
                      ...-.+|+ + .|+.-+++||.|.+  .+||.++++.+..
T Consensus       255 L~~v~~A~-~~aGa~Gv~vGRNIfQ~~~~dp~~~v~al~~  293 (307)
T 3fok_A          255 FASWEHAL-TLPGVRGLTVGRTLLYPQDGDVAAAVDTAAR  293 (307)
T ss_dssp             HHHHHHHT-TSTTEEEEEECTTTSSCSSSCHHHHHHHHHH
T ss_pred             HHHHHHHH-HhCCCeEEeechhhccCCCCCHHHHHHHHHH
Confidence            45668889 8 79999999999999  9999999998876

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=85.27  E-value=4.8  Score=40.48  Aligned_cols=36  Identities=17%  Similarity=0.246  Sum_probs=26.5

Q ss_pred             ceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCC
Q psy4093         241 LLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPD  287 (434)
Q Consensus       241 ~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~D  287 (434)
                      .++...||+-.          .+...|+ .+|||.+.|||++..++.
T Consensus       201 PVIAdGGI~~~----------~di~kAL-a~GAd~V~iGr~f~~t~E  236 (361)
T 3r2g_A          201 SIVADGGIKTS----------GDIVKAL-AFGADFVMIGGMLAGSAP  236 (361)
T ss_dssp             EEEEESCCCSH----------HHHHHHH-HTTCSEEEESGGGTTBTT
T ss_pred             CEEEECCCCCH----------HHHHHHH-HcCCCEEEEChHHhCCcc
Confidence            34556777621          2456788 899999999999998753

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=84.99  E-value=3.8  Score=39.42  Aligned_cols=44  Identities=18%  Similarity=0.227  Sum_probs=30.0

Q ss_pred             CCHHHHHH--HcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4093         262 NGPTDVIT--LRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLK  308 (434)
Q Consensus       262 ~TP~~Ai~--~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~  308 (434)
                      .||++|..  .+|||.+.|||++.. .|| ...+++++ +.+.++.+.+
T Consensus       252 ~~~~da~~~l~~GAd~V~vg~~~l~-~~p-~~~~~i~~-~l~~~l~~~g  297 (311)
T 1jub_A          252 ETGQDAFEHLLCGATMLQIGTALHK-EGP-AIFDRIIK-ELEEIMNQKG  297 (311)
T ss_dssp             CSHHHHHHHHHHTCSEEEECHHHHH-HCT-HHHHHHHH-HHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCEEEEchHHHh-cCc-HHHHHHHH-HHHHHHHHcC
Confidence            46666541  589999999999996 345 35666665 5556666654

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=84.77  E-value=0.54  Score=44.18  Aligned_cols=74  Identities=9%  Similarity=-0.102  Sum_probs=55.0

Q ss_pred             CcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeee---ecCCHHHHHHHHHHHhcC-CCeeeecC--CCCcchhHHHHH
Q psy4093         342 SNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAV---RDFSEEVQKELTALAKQH-EFLRSRNG--WFSPILSSFSLR  415 (434)
Q Consensus       342 s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~---~~~g~~~v~~L~~la~k~-gf~iFlDl--Kf~DIpnTV~~a  415 (434)
                      ++.|+|+|+.+.++.++.+++.|...-.++|.-..|   ..+|++++++|++    + |..+|+|.  +..|...-++..
T Consensus         8 ~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~----~~~~~~~~dvhLmv~~p~~~i~~~   83 (228)
T 3ovp_A            8 GPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRK----QLGQDPFFDMHMMVSKPEQWVKPM   83 (228)
T ss_dssp             EEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHH----HHCSSSCEEEEEECSCGGGGHHHH
T ss_pred             eeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHH----hhCCCCcEEEEEEeCCHHHHHHHH
Confidence            356888999999999999999999888888877776   5789999999964    3 44566665  444444455555


Q ss_pred             hhcC
Q psy4093         416 FRDD  419 (434)
Q Consensus       416 ~~~~  419 (434)
                      ...|
T Consensus        84 ~~aG   87 (228)
T 3ovp_A           84 AVAG   87 (228)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            5544

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=84.39  E-value=0.45  Score=47.47  Aligned_cols=36  Identities=31%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                      .+++ +.|+|-+.|||+|..|.||.++++++++ .++.
T Consensus       258 ~~~l-~~GaDgV~VGsaI~~a~dP~~aar~l~~-ai~~  293 (330)
T 2yzr_A          258 ALMM-QLGSDGVFVGSGIFKSENPLERARAIVE-ATYN  293 (330)
T ss_dssp             HHHH-HTTCSCEEESHHHHTSSCHHHHHHHHHH-HHHT
T ss_pred             HHHH-HcCcCEEeeHHHHhcCCCHHHHHHHHHH-HHHh
Confidence            4456 7899999999999999999999999987 5544

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=84.19  E-value=0.46  Score=46.66  Aligned_cols=41  Identities=20%  Similarity=0.237  Sum_probs=33.4

Q ss_pred             HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q psy4093         264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQR  306 (434)
Q Consensus       264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~  306 (434)
                      ..+++ ++|||.++||+.|++++||.++++++++ .++.|...
T Consensus       224 v~~~~-~~GAdgVlVGsai~~a~dp~~~~~~l~~-ai~~~~~~  264 (297)
T 4adt_A          224 AAMCM-QLGMDGVFVGSGIFESENPQKMASSIVM-AVSNFNNP  264 (297)
T ss_dssp             HHHHH-HTTCSCEEESHHHHTSSCHHHHHHHHHH-HHHTTTCH
T ss_pred             HHHHH-HcCCCEEEEhHHHHcCCCHHHHHHHHHH-HHHhhCCH
Confidence            34567 8999999999999999999999999987 55554433

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=84.18  E-value=8.9  Score=39.29  Aligned_cols=40  Identities=13%  Similarity=-0.002  Sum_probs=27.9

Q ss_pred             HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4093         265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLK  308 (434)
Q Consensus       265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~  308 (434)
                      .+++ .+|||.+-|||+.... .| ..+++|.+ +.++++++.+
T Consensus       361 ~e~l-~aGAd~VqIgra~l~~-GP-~~~~~i~~-~L~~~l~~~G  400 (415)
T 3i65_A          361 LEKI-EAGASVCQLYSCLVFN-GM-KSAVQIKR-ELNHLLYQRG  400 (415)
T ss_dssp             HHHH-HHTEEEEEESHHHHHH-GG-GHHHHHHH-HHHHHHHHTT
T ss_pred             HHHH-HcCCCEEEEcHHHHhc-CH-HHHHHHHH-HHHHHHHHcC
Confidence            4557 7899999999998643 23 35667765 5666666654

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=80.44  E-value=3.1  Score=41.21  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             HHHHHHcC-CCEEEeCCcccCCCCHH
Q psy4093         265 TDVITLRG-ADLGVVGRGITQAPDPV  289 (434)
Q Consensus       265 ~~Ai~~~G-AD~IVVGR~It~A~DP~  289 (434)
                      .+++ +.| +|+|-+||++...+|-.
T Consensus       304 ~~~l-~~G~aD~V~iGR~~lanPdl~  328 (349)
T 3hgj_A          304 ETLL-QAGSADLVLLGRVLLRDPYFP  328 (349)
T ss_dssp             HHHH-HTTSCSEEEESTHHHHCTTHH
T ss_pred             HHHH-HCCCceEEEecHHHHhCchHH
Confidence            4556 778 99999999999887744

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=80.28  E-value=4.2  Score=38.63  Aligned_cols=34  Identities=21%  Similarity=0.128  Sum_probs=25.5

Q ss_pred             CHHHH--HHHcCCCEEEeCCcccCC--CCHHHHHHHHHH
Q psy4093         263 GPTDV--ITLRGADLGVVGRGITQA--PDPVEAARRYKE  297 (434)
Q Consensus       263 TP~~A--i~~~GAD~IVVGR~It~A--~DP~~aa~~i~~  297 (434)
                      ||+++  + .+|||.+|||..|+++  +|+.+.++++.+
T Consensus       217 t~e~~~~~-~~gADgvIVGSai~~~~~~~~~~~~~~~~~  254 (262)
T 2ekc_A          217 KKEHAREI-GSFADGVVVGSALVKLAGQKKIEDLGNLVK  254 (262)
T ss_dssp             SHHHHHHH-HTTSSEEEECHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHH-HcCCCEEEECHHHHhhhhhhhHHHHHHHHH
Confidence            44444  4 6899999999999987  666666666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	434
d1dqwa_	267	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	5e-20
d1dqwa_	267	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	1e-15
d2ffca1	332	c.1.2.3 (A:20-351) Orotidine 5'-monophosphate deca	4e-14
d2q8za1	323	c.1.2.3 (A:1-323) Protozoan orotidine monophosphat	1e-13
d2fdsa1	324	c.1.2.3 (A:1-324) Protozoan orotidine monophosphat	2e-11
d1dbta_	237	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	4e-11
d1dbta_	237	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	4e-04
d1eixa_	231	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	5e-11
d1eixa_	231	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	1e-05
d2czda1	206	c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decar	2e-09
d2czda1	206	c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decar	3e-04
d1km4a_	212	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	2e-07
d1km4a_	212	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	8e-04
d1vqta1	198	c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decar	2e-07
d1q6oa_	213	c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarbo	5e-07
d1q6oa_	213	c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarbo	1e-05
d1asta_	200	d.92.1.8 (A:) Astacin {European fresh water crayfi	9e-07

>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 267

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.2 bits (215), Expect = 5e-20
 Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 36/204 (17%)

Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELG-EDRGVFLIAQ 169
           K ADIG  V  Q+      I EWA +   H + GPG +  +++ ++E+  E RG+ ++A+
Sbjct: 93  KFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAE 152

Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
           LSC+G+L   +Y                             + T+ +A+S    + G + 
Sbjct: 153 LSCKGSLSTGEY----------------------------TKGTVDIAKSDKDFVIGFIA 184

Query: 230 QAPSVLAS-NPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGIT-QAPD 287
           Q            L +TPG+ L+  GD  GQQY    DV+   G+D+ +VGRG+  +  D
Sbjct: 185 QRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVV-STGSDIIIVGRGLFAKGRD 243

Query: 288 PVEAARRYKEVMWEAYEQRLKKEN 311
                 RY++  WEAY +R  +++
Sbjct: 244 AKVEGERYRKAGWEAYLRRCGQQD 267

>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 267

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.5 bits (182), Expect = 1e-15
 Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 318 FETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAV 377
           ++ R A     +++ L +IM +K++NLC +LDV   K+LL L   LGP I +LKTH D +
Sbjct: 6   YKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDIL 65

Query: 378 RDFS-EEVQKELTALAKQHEFLRSRNGWFSPI 408
            DFS E   K L AL+ ++ FL   +  F+ I
Sbjct: 66  TDFSMEGTVKPLKALSAKYNFLLFEDRKFADI 97

>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]} Length = 332

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Plasmodium vivax [TaxId: 5855]

 Score = 70.8 bits (172), Expect = 4e-14
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 31/206 (15%)

Query: 108 LWSIIILKLADIGAAVGHQFR--LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVF 165
           + +I+ +K+ DIG  V H  +       +   T +   G   L++I    +        F
Sbjct: 143 VPTILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMGTQMLRDICLDEEC-KRYYSTF 201

Query: 166 LIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQ--SFPGL 223
           ++ + +   + I +    +  K              V+ +    + + L L +   F G 
Sbjct: 202 VLVKTTNADSHIFQNRLSLDGKEA----------YVVIAEEVQKMAKQLHLEENGEFVGF 251

Query: 224 IAG--LVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITL-----RGADLG 276
           + G     +   +    P    L PG+         G Q      ++           L 
Sbjct: 252 VVGANCYDEIKKIRELFPDCYILAPGV---------GAQKGDLRKMLCNGYSKNYEKVLI 302

Query: 277 VVGRGITQAPDPVEAARRYKEVMWEA 302
            VGR IT++  P +AAR Y + + E 
Sbjct: 303 NVGRAITKSGSPQQAAREYHQQIKEV 328

>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate decarboxylase {Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]} Length = 323

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 28/231 (12%)

Query: 88  AFSKNGDDTIVPHFVMAQNVLWSIII-LKLADIGAAVGHQ--FRLIGEWAHLVTVHSIAG 144
            +   G D +   F     +    I+ +K+ DIG  V +   F      +   TV+   G
Sbjct: 110 PYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMG 169

Query: 145 PGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLP 204
              L++I    ++        L+   +    +  +  +    +A  +  ++ L  +  L 
Sbjct: 170 TNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLN 229

Query: 205 KCDNDVQETLKLAQSFPGLIAG--LVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYN 262
              N+            G + G     +   +    P    L+PGI         G Q  
Sbjct: 230 LEQNNEF---------IGFVVGANSYDEMNYIRTYFPNCYILSPGI---------GAQNG 271

Query: 263 GPTDVITL-----RGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLK 308
                +T          L  +GR IT+ P P +AA+ Y + +    +Q ++
Sbjct: 272 DLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILKQNME 322

>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]} Length = 324

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium berghei [TaxId: 5821]

 Score = 62.7 bits (151), Expect = 2e-11
 Identities = 33/207 (15%), Positives = 76/207 (36%), Gaps = 27/207 (13%)

Query: 108 LWSIIILKLADIGAAVGHQFR--LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVF 165
           + +++ +K+ DIG  V +  +       +   T++   G   L++I    ++  +    +
Sbjct: 133 IPTMLDMKINDIGNTVKNYRKFIFEYLKSDSCTINVYMGTSMLKDICFDYEK-NKYYSAY 191

Query: 166 LIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIA 225
           ++ + + + + I +    +  K   + + +         K D +          F G + 
Sbjct: 192 VLIKTTNKDSFIFQNELSINDKQAYIVMAEETQKMATDLKIDQNN--------EFIGFVV 243

Query: 226 GLVCQAPSVLASN--PGLLQLTPGIHLNQTGDNKGQQYNGPTDVITL-----RGADLGVV 278
           G        +  N  P    L+PGI         G Q       +           L  V
Sbjct: 244 GSNAFEEMKIIRNKFPDSYILSPGI---------GAQNGDLYKTLKNGYNKDYEKLLINV 294

Query: 279 GRGITQAPDPVEAARRYKEVMWEAYEQ 305
           GR IT++P+P +++  Y   + + ++ 
Sbjct: 295 GRAITKSPNPKKSSESYYNQIIQIFKD 321

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} Length = 237

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

 Score = 60.3 bits (145), Expect = 4e-11
 Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 19/213 (8%)

Query: 89  FSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAH-LVTVHSIAGPGP 147
           F + G   IV         L+  +  KL DI   V    + +      LV VH+  G   
Sbjct: 39  FYQEGPS-IVKQLKERNCELFLDL--KLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKM 95

Query: 148 LQEI-QRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKC 206
           +Q   + + +     +    +  ++   +  ++          +         + V+   
Sbjct: 96  MQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKS-------LIDTVVHYS 148

Query: 207 DNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTD 266
               +  L                     A +P  L +TPGI +++   N   +   P  
Sbjct: 149 KQAEESGLDGVVCSV------HEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAI 202

Query: 267 VITLRGADLGVVGRGITQAPDPVEAARRYKEVM 299
               +G+   VVGR IT+A DPV+A +  +   
Sbjct: 203 ARE-KGSSAIVVGRSITKAEDPVKAYKAVRLEW 234

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} Length = 237

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 9/49 (18%), Positives = 17/49 (34%)

Query: 340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
           K +   +ALD   A++ L            +K   +        + K+L
Sbjct: 2   KNNLPIIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQL 50

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

 Score = 59.9 bits (144), Expect = 5e-11
 Identities = 28/186 (15%), Positives = 52/186 (27%), Gaps = 18/186 (9%)

Query: 115 KLADIGAAVGHQF-RLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQ 173
           K  DI     H           +V VH+  G   +   +      G  +   L+  ++  
Sbjct: 62  KFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFG--KDAPLLIAVTVL 119

Query: 174 GNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS 233
            ++                              +     T K         A    +   
Sbjct: 120 TSMEASDL------------VDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQ 167

Query: 234 VLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAAR 293
           V         +TPGI    +     ++   P   ++  G D  V+GR +TQ+ DP +  +
Sbjct: 168 VF--GQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSA-GVDYMVIGRPVTQSVDPAQTLK 224

Query: 294 RYKEVM 299
                +
Sbjct: 225 AINASL 230

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
             S + VALD     D L    ++ P    LK   +    F  +  +EL
Sbjct: 2   TNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVREL 50

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} Length = 206

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 54.9 bits (131), Expect = 2e-09
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 254 GDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVM 299
               G Q     D +   GAD  +VGR I  AP+P EAA+   + +
Sbjct: 161 APGIGAQGGKAKDAVKA-GADYIIVGRAIYNAPNPREAAKAIYDEI 205

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} Length = 206

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 6/32 (18%), Positives = 19/32 (59%)

Query: 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSD 375
           + +ALDV + +  + + + +  +I+++K +  
Sbjct: 2   IVLALDVYEGERAIKIAKSVKDYISMIKVNWP 33

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 212

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 36/190 (18%)

Query: 111 IIILKLADIGAAV-GHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQ 169
           I    +ADI               A  + VH   G   ++    +++E+G +  +     
Sbjct: 58  IADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMS 117

Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
                  I     ++               N V P    +    L+        +     
Sbjct: 118 HPGAEMFIQGAADEIARMG-----VDLGVKNYVGPSTRPERLSRLREIIGQDSFL----- 167

Query: 230 QAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPV 289
                         ++PG+     G + G+          LR AD  +VGR I  A +P 
Sbjct: 168 --------------ISPGVGA--QGGDPGET---------LRFADAIIVGRSIYLADNPA 202

Query: 290 EAARRYKEVM 299
            AA    E +
Sbjct: 203 AAAAGIIESI 212

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 212

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 337 MVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHE 396
           ++ +   L +A+D+    D L +T ++  +I  +K           E    +    K+  
Sbjct: 1   VMNR---LILAMDLMNRDDALRVTGEVREYIDTVKIGYPL---VLSEGMDIIAEFRKRFG 54

Query: 397 FL 398
             
Sbjct: 55  CR 56

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]} Length = 198

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.0 bits (116), Expect = 2e-07
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 243 QLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297
            L PGI +         Q +  T       A+  V+GR I  + +P E  +R KE
Sbjct: 147 ILVPGIRM---EVKADDQKDVVTLEEMKGIANFAVLGREIYLSENPREKIKRIKE 198

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (113), Expect = 5e-07
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 258 GQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVM 299
           G           +    + + GR I  A  PVEAAR++K  +
Sbjct: 169 GLALEDLPLFKGI-PIHVFIAGRSIRDAASPVEAARQFKRSI 209

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 11/56 (19%), Positives = 19/56 (33%)

Query: 343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFL 398
            L VALD          TR +   + +++  +           ++L AL      L
Sbjct: 3   MLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVL 58

>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]} Length = 200

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Astacin
domain: Astacin
species: European fresh water crayfish (Astacus astacus) [TaxId: 6715]

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 46  IPYYIDDDHFCTERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN--GDDTIVP 99
               +D        NF     +     G  Y + S+MHY + +FS      +TIVP
Sbjct: 116 NYQNVDPSM---TSNFDID--TYSRYVGEDYQYYSIMHYGKYSFSIQWGVLETIVP 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	434
d1dqwa_	267	Orotidine 5'-monophosphate decarboxylase (OMP deca	100.0
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	100.0
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.98
d1vqta1	198	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.97
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.94
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.94
d2fdsa1	324	Protozoan orotidine monophosphate decarboxylase {P	99.93
d1dqwa_	267	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.93
d2q8za1	323	Protozoan orotidine monophosphate decarboxylase {P	99.93
d2ffca1	332	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.92
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.75
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.72
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	99.69
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.63
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.62
d1vqta1	198	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.56
d1asta_	200	Astacin {European fresh water crayfish (Astacus as	99.56
d2ffca1	332	Orotidine 5'-monophosphate decarboxylase (OMP deca	99.41
d2q8za1	323	Protozoan orotidine monophosphate decarboxylase {P	99.41
d2fdsa1	324	Protozoan orotidine monophosphate decarboxylase {P	99.4
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	99.33
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	95.22
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	94.68
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	94.35
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	94.32
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	93.45
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	92.75
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	92.48
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	92.2
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	86.75
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	85.62

>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-35  Score=283.25  Aligned_cols=200  Identities=25%  Similarity=0.375  Sum_probs=148.8

Q ss_pred             ccceecccchhhhccCCCcccccc-chhchhhhHHHh-hhcccCHHHHHHHHHHHhc----cccceEEEcccCCchhHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPH-FVMAQNVLWSII-ILKLADIGAAVGHQFRLIG----EWAHLVTVHSIAGPGPLQE  150 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~-~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~----~~~d~vTvH~~~G~~ml~~  150 (434)
                      ||-.+.+.|...|...|..-+... ....+..++.+| |+|++||||||..++++..    .|+|++|||+++|.+||++
T Consensus        53 ~~v~~~Kig~~lf~~~G~~~~~~~~~~~~~~~~~~IflDlK~~DIpnTv~~a~~a~~~~~~~~~d~vTvh~~~G~~~l~~  132 (267)
T d1dqwa_          53 PKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSG  132 (267)
T ss_dssp             GGCSEEEECGGGCSSCCTTTTHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHSTTTCHHHHCSEEEEESTTCTHHHHH
T ss_pred             CcceEEEECHHHHhhcChHHHHHHHHHHHhccCceEecCccccCCcHHHHHHHHHHHHHhhcCCcEEEecCcCCHHHHHH
Confidence            455666677777776664433221 122233455566 9999999999999888543    2699999999999999999


Q ss_pred             HHHHhhhhCCCCceEEEEEeCCCCC---CChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceE
Q psy4093         151 IQRISDELGEDRGVFLIAQLSCQGN---LIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL  227 (434)
Q Consensus       151 a~~~~~~~~~~~~v~~v~~lss~~s---l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~Gv  227 (434)
                      +++++.+.+  ..++.++.+++.+.   +...++                            ++.+..+++.   +.+|+
T Consensus       133 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~----------------------------~~~~~~~a~~---~~~gv  179 (267)
T d1dqwa_         133 LKQAAEEVT--KEPRGLLMLAELSCKGSLSTGEY----------------------------TKGTVDIAKS---DKDFV  179 (267)
T ss_dssp             HHHHHHHHC--SSCCEEEEECSCCSTTCCCCHHH----------------------------HHHHHHHHTT---CTTTE
T ss_pred             HHHHhhccC--CccccchhhhhhhhhhhhhhhhH----------------------------HHHHHHHHHh---CCCCc
Confidence            999987665  45556665555222   111111                            1244445543   46677


Q ss_pred             EeCccchh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCccc-CCCCHHHHHHHHHHHHHHH
Q psy4093         228 VCQAPSVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGIT-QAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       228 Vcs~~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It-~A~DP~~aa~~i~~~~~~a  302 (434)
                      ||++.+..    ..+++++++|||||+...+++.|+|++||.+|+ ++|||||||||||| .|+||.++|++|+++.|+|
T Consensus       180 vg~~~~~~~~~~~~~~~~~ivtpgir~~~~~~~~g~q~~tp~eAi-~~Gad~iVVGR~I~~aa~dp~~aak~~r~~~~~~  258 (267)
T d1dqwa_         180 IGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVV-STGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEA  258 (267)
T ss_dssp             EEEECSSCCCCTTTTCCCEEEECSBCSSTTTCSTTTCCBCHHHHH-HTTCCEEEECGGGTSTTCCHHHHHHHHHHHHHHH
T ss_pred             eeeehhHHHHHHhcCccceEeccccccCCCCCCCCcccCCHHHHH-HCCCCEEEECChhcCCCCCHHHHHHHHHHHHHHH
Confidence            77665543    567899999999999866777889999999999 99999999999999 4789999999999999999


Q ss_pred             HHHHHhhc
Q psy4093         303 YEQRLKKE  310 (434)
Q Consensus       303 ~~~~~~~~  310 (434)
                      |++|+++|
T Consensus       259 ~l~~~~~~  266 (267)
T d1dqwa_         259 YLRRCGQQ  266 (267)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHhccC
Confidence            99999976

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=4.9e-34  Score=271.89  Aligned_cols=198  Identities=22%  Similarity=0.309  Sum_probs=150.6

Q ss_pred             ccceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRI  154 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~  154 (434)
                      +|-.+...|...|...|...+.....    ..+.+| |+||+|||||+..+++.+.+ |+|++|+|+++|.+|+++++++
T Consensus        27 ~~i~~iKvG~~l~~~~G~~~i~~l~~----~~~~IflD~K~~DIgnTv~~~~~~~~~~~~d~vtvh~~~G~~~i~aa~~~  102 (237)
T d1dbta_          27 QEPLFVKVGMELFYQEGPSIVKQLKE----RNCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEG  102 (237)
T ss_dssp             TSCCEEEECHHHHHHHTHHHHHHHHH----TTCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHH
T ss_pred             CcccEEEECHHHHhhcCHHHHHHHHh----cchheehhhhhccCchHHHHHHHhhhccccceEEeecccchHHHHHHHHh
Confidence            44556677777787777665544422    234456 99999999999999998777 6999999999999999999988


Q ss_pred             hhhhCC----CCceEEEEEeCCCCCCChHHHH-hhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEE
Q psy4093         155 SDELGE----DRGVFLIAQLSCQGNLIDEKYT-QVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLV  228 (434)
Q Consensus       155 ~~~~~~----~~~v~~v~~lss~~sl~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvV  228 (434)
                      .++...    ...+++|++|+|   ++..++. .+++...                   ..+.|.++++.+.+ |++|+|
T Consensus       103 ~~~~~~~~~~~~~l~~v~~lts---~~~~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~g~~g~v  160 (237)
T d1dbta_         103 LEEGTPAGKKRPSLIAVTQLTS---TSEQIMKDELLIEKS-------------------LIDTVVHYSKQAEESGLDGVV  160 (237)
T ss_dssp             HHHHSCTTSCCCEEEEECSCTT---CCHHHHHHTSCBCSC-------------------HHHHHHHHHHHHHHTTCSEEE
T ss_pred             hhhcchhccccceeEEEecccc---cchHHHHhhhhhhcc-------------------cchhhHHHHHhhhhcCcceee
Confidence            765421    124666667666   3544443 2222221                   13567788877766 799999


Q ss_pred             eCccchh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         229 CQAPSVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       229 cs~~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                      ||+++..    ..+++|+++|||||++..+.+.|+|++||.+|+ ++|||+||||||||+|+||.++|++|++ +|++
T Consensus       161 ~s~~~~~~~r~~~~~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~-~~GaD~iIVGR~I~~s~dP~~aa~~i~~-~ie~  236 (237)
T d1dbta_         161 CSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAR-EKGSSAIVVGRSITKAEDPVKAYKAVRL-EWEG  236 (237)
T ss_dssp             CCGGGHHHHTTTSCTTCEEEECCBCCTTSCCTTCSSCBCHHHHH-HTTCSEEEECHHHHTSSCHHHHHHHHHH-HHHT
T ss_pred             cchhhhhhhccccccceeEeccccccCCCCCCCceeeCCHHHHH-HcCCCEEEECCcccCCCCHHHHHHHHHH-HHcC
Confidence            9999875    568999999999999833333344489999999 8999999999999999999999999998 6874

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=2.3e-33  Score=265.93  Aligned_cols=193  Identities=19%  Similarity=0.292  Sum_probs=143.9

Q ss_pred             ceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhh
Q psy4093          79 DSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISD  156 (434)
Q Consensus        79 ~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~  156 (434)
                      -.+...|...|...|...|....    +.++.+| |+||+|||||+..+++.+.+ ++|++|||+++|.+|++++++++.
T Consensus        29 i~~iKiG~~l~~~~G~~~i~~l~----~~~~~if~D~K~~DI~nt~~~~~~~~~~~~~~~~tvh~~~g~~~l~~~~~~~~  104 (231)
T d1eixa_          29 DCRLKVGKEMFTLFGPQFVRELQ----QRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALV  104 (231)
T ss_dssp             TCEEEEEHHHHHHHHHHHHHHHH----HTTCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTG
T ss_pred             ceEEEECHHHHhhcCHHHHHHHH----hcCchhhHhhHhhcCcHHHHHHHHhhhcccceEEEEeccCcHHHHHHHHHhhh
Confidence            34455556666666655543332    2344456 99999999999999998888 599999999999999999999987


Q ss_pred             hhCCCC-ceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccch
Q psy4093         157 ELGEDR-GVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSV  234 (434)
Q Consensus       157 ~~~~~~-~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~  234 (434)
                      +.+... .+++++.+   ++++...+.+.|++...                   .+.+.++|..+.+ +++|+||++.+.
T Consensus       105 ~~~~~~~~~~~v~~~---ts~~~~~~~~~~~~~~~-------------------~~~~~~~a~~~~~~~~~~~~~~~~~~  162 (231)
T d1eixa_         105 PFGKDAPLLIAVTVL---TSMEASDLVDLGMTLSP-------------------ADYAERLAALTQKCGLDGVVCSAQEA  162 (231)
T ss_dssp             GGGGGCCEEEEECSC---TTCCHHHHHTTTCCSCH-------------------HHHHHHHHHHHHHTTCSEEECCGGGH
T ss_pred             hcCccceEEEEEeec---cccccchhcccccccch-------------------hHHHHHHHHHHHHhccccccccchhh
Confidence            665211 22333344   44566666554443322                   2456667776655 799999999887


Q ss_pred             h----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHH
Q psy4093         235 L----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEV  298 (434)
Q Consensus       235 ~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~  298 (434)
                      .    .++++++++|||||++..+.+.|+|++||++|+ ++|||||||||+||+|+||.++|++|+++
T Consensus       163 ~~~~~~~~~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai-~~GaD~iIVGR~It~a~dP~~aa~~i~~~  229 (231)
T d1eixa_         163 VRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQAL-SAGVDYMVIGRPVTQSVDPAQTLKAINAS  229 (231)
T ss_dssp             HHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHH-HTTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred             hhhhhhcCCccceecCCcccCCCCccCccccCCHHHHH-HcCCCEEEECCcccCCCCHHHHHHHHHHH
Confidence            5    668899999999999833333344489999999 99999999999999999999999999974

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=2.2e-31  Score=247.77  Aligned_cols=168  Identities=22%  Similarity=0.205  Sum_probs=120.7

Q ss_pred             ecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhccc-cceEEEcccCCchhHHHHHHHhhhh
Q psy4093          81 VMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDEL  158 (434)
Q Consensus        81 VMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~~-~d~vTvH~~~G~~ml~~a~~~~~~~  158 (434)
                      +.+-|...|. +|...+...    ++.++.+| |+|||||||||..+++.+.++ +|++|+|+++|.+|+++++++.   
T Consensus        24 ~vKvG~~l~~-~G~~~i~~l----~~~~~~IflDlK~~DIpnTv~~~v~~~~~~g~d~itvH~~~G~~~l~~a~~~~---   95 (198)
T d1vqta1          24 VVKVGHNLAI-HGKKIFDEL----AKRNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCAGYESVERALSAT---   95 (198)
T ss_dssp             EEEECHHHHT-TCTHHHHHH----HTTTCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGGCHHHHHHHHHHC---
T ss_pred             EEEECHHHHh-ccHHHHHHH----HHCCCcEEEEehhcCccHHHHHHHHHHhhccccEEEEEccCchhhhhHhhhhc---
Confidence            5677776665 576555433    23356667 999999999999999999997 9999999999999999998875   


Q ss_pred             CCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchh---
Q psy4093         159 GEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVL---  235 (434)
Q Consensus       159 ~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~---  235 (434)
                      +  +.+++|++|||..+ ..+++.                            +.+.++++.   +++||||++.+..   
T Consensus        96 ~--~~~l~Vt~LtS~~~-~~~~~~----------------------------~~~~~l~~~---g~~~vv~~~~~~~~~~  141 (198)
T d1vqta1          96 D--KHVFVVVKLTSMEG-SLEDYM----------------------------DRIEKLNKL---GCDFVLPGPWAKALRE  141 (198)
T ss_dssp             S--SEEEEECCCTTSCC-CHHHHH----------------------------HHHHHHHHH---TCEEECCHHHHHHHTT
T ss_pred             c--ccceeEEEeecccc-chHHHH----------------------------HHHHHHHHh---ccCcccccchhhhhhh
Confidence            2  56888888887321 111221                            245555543   5889888876543   


Q ss_pred             hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         236 ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       236 ~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      .++.  .++|||||++  +. .+||  ++||+ |+ ++||||||||||||+|+||++++++|++
T Consensus       142 ~~~~--~iitPGIr~~--~~-~dDQkr~~t~~-ai-~~GAd~iVVGR~It~s~dp~~~~~~i~e  198 (198)
T d1vqta1         142 KIKG--KILVPGIRME--VK-ADDQKDVVTLE-EM-KGIANFAVLGREIYLSENPREKIKRIKE  198 (198)
T ss_dssp             TCCS--CEEECCBC------------CCBCHH-HH-TTTCSEEEESHHHHTSSCHHHHHHHHTC
T ss_pred             hccc--cccccccccC--CC-CCCcccccCHH-HH-HcCCCEEEECCcccCCCCHHHHHHHHhC
Confidence            3433  3679999986  33 3455  46775 78 7999999999999999999999999974

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=5.3e-28  Score=224.76  Aligned_cols=173  Identities=25%  Similarity=0.306  Sum_probs=132.7

Q ss_pred             ccceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRI  154 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~  154 (434)
                      +|-.+.+-|...|...|.+.+....   ++.++.++ |+|++|||||+..+++.+.+ |+|++|||+++|.+|++++.+.
T Consensus        23 ~~v~~iKvG~~l~~~~G~~~i~~l~---~~~~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~~g~~~i~~~~~~   99 (206)
T d2czda1          23 DYISMIKVNWPLILGSGVDIIRRLK---EETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKEL   99 (206)
T ss_dssp             GGCSEEEEEHHHHHHHCTTHHHHHH---HHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHTT
T ss_pred             CcccEEEECHHHHhhcCHHHHHHHH---HhcCCeEEEEeeeeeecccchheehhhccccccEEEeeecccHHHHHHhhhc
Confidence            4455677777777766766554332   23344555 99999999999999997777 8999999999999999987653


Q ss_pred             hhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCc---
Q psy4093         155 SDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQA---  231 (434)
Q Consensus       155 ~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~---  231 (434)
                      .       ..++++.|+++++++..   +                        ...+.++++|..+.  ..|+||++   
T Consensus       100 ~-------~~~~~~~~s~~~~~~~~---~------------------------~~~~~~~~~a~~~~--~~g~~~~~~~~  143 (206)
T d2czda1         100 G-------EIIMVVEMSHPGALEFI---N------------------------PLTDRFIEVANEIE--PFGVIAPGTRP  143 (206)
T ss_dssp             S-------EEEEECCCCSGGGGTTT---G------------------------GGHHHHHHHHHHHC--CSEEECCCSST
T ss_pred             c-------cceEEEeccCCcccccc---c------------------------HHHHHHHHHHHhcc--cccccccccCc
Confidence            2       35678888876544311   1                        11357888888874  56777655   


Q ss_pred             cchh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHH
Q psy4093         232 PSVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEV  298 (434)
Q Consensus       232 ~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~  298 (434)
                      .++.    .+++++.++|||||++         +.||.+|+ ++|||++|||||||+|+||.+++++|+++
T Consensus       144 ~~~~~~r~~~~~~~~i~~pGI~~~---------~~~~~~ai-~~Gad~iVvGR~I~~a~dP~~aa~~i~~~  204 (206)
T d2czda1         144 ERIGYIRDRLKEGIKILAPGIGAQ---------GGKAKDAV-KAGADYIIVGRAIYNAPNPREAAKAIYDE  204 (206)
T ss_dssp             HHHHHHHHHSCTTCEEEECCCCSS---------TTHHHHHH-HHTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred             hhhhhhhhhhcccceEECCCcccc---------CCCHHHHH-HhCCCEEEEChhhccCCCHHHHHHHHHHH
Confidence            4443    5788999999999975         56999999 99999999999999999999999999984

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.94  E-value=2.4e-27  Score=221.51  Aligned_cols=176  Identities=22%  Similarity=0.312  Sum_probs=133.4

Q ss_pred             cceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHh
Q psy4093          78 FDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRIS  155 (434)
Q Consensus        78 y~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~  155 (434)
                      |-.+.+-|...|...|...+...   -++..+.++ |+|++|||+|+..+++.+.+ |+|++|||+++|.+|++++++++
T Consensus        27 ~v~~iKig~~l~~~~G~~~v~~l---~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g~~~i~~~~~~a  103 (212)
T d1km4a_          27 YIDTVKIGYPLVLSEGMDIIAEF---RKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVA  103 (212)
T ss_dssp             TCSEEEEEHHHHHHHCTHHHHHH---HHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHH
T ss_pred             CCcEEEECHHHHHhcCHHHHHHH---HHhcccceehhhhhhccccHHHHhHhhhccccccEEEEeccCChHHHHHHHHHH
Confidence            33455666666766665554332   223333455 99999999999999887666 79999999999999999999998


Q ss_pred             hhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEE---eCcc
Q psy4093         156 DELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLV---CQAP  232 (434)
Q Consensus       156 ~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvV---cs~~  232 (434)
                      .+.+  +.+++++.||+++..   .+.+    .                    .++.+.+++..+  +++|+|   |++.
T Consensus       104 ~~~~--~~~~~l~~~s~~~~~---~~~~----~--------------------~~~~~~~~~~~~--g~~g~v~~~~~~~  152 (212)
T d1km4a_         104 EEMG--REVFLLTEMSHPGAE---MFIQ----G--------------------AADEIARMGVDL--GVKNYVGPSTRPE  152 (212)
T ss_dssp             HHHT--CEEEEECSCSSGGGG---TTHH----H--------------------HHHHHHHHHHHH--TCCEEECCTTCHH
T ss_pred             HhcC--Cccccchhhcchhhh---hhhh----h--------------------HHHHHHHHHHHh--CCccccccccCHH
Confidence            8776  678899999885321   1111    0                    124677777776  588888   5555


Q ss_pred             chh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHH
Q psy4093         233 SVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEV  298 (434)
Q Consensus       233 e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~  298 (434)
                      +..    .+++++++||||||++         +.++.+++  +|||+|||||+||+|+||.+++++|+++
T Consensus       153 ~i~~ir~~~~~~~~~vtpGI~~~---------g~~~~d~~--~~ad~iIvGR~I~~a~dP~~aa~~i~~~  211 (212)
T d1km4a_         153 RLSRLREIIGQDSFLISPGVGAQ---------GGDPGETL--RFADAIIVGRSIYLADNPAAAAAGIIES  211 (212)
T ss_dssp             HHHHHHHHHCSSSEEEECCBSTT---------SBCHHHHT--TTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred             HHhhhhhccCCceeEEcCccccC---------CCCHHHHH--hhCCEEEECchhccCCCHHHHHHHHHHh
Confidence            553    6788999999999986         34678888  6899999999999999999999999874

>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium berghei [TaxId: 5821]

Probab=99.93  E-value=9.5e-28  Score=238.27  Aligned_cols=206  Identities=17%  Similarity=0.179  Sum_probs=135.1

Q ss_pred             ccceecccchhhhccCCCccccccc----hhchhhhHHHh-hhcccCHHHHHHHHHHHhcc--ccceEEEcccCCchhHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHF----VMAQNVLWSII-ILKLADIGAAVGHQFRLIGE--WAHLVTVHSIAGPGPLQ  149 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~----~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~--~~d~vTvH~~~G~~ml~  149 (434)
                      ||-...+-+...|...|..-+....    .+ +..++.++ |+|++|||||+..+++++.+  ++|++|||+++|.+||+
T Consensus        98 ~~v~~~K~~lafFe~~G~~G~~~L~~~i~~l-~~~g~~VflDlK~~DIpnTv~~ya~a~~~~l~aD~lTVh~~~G~d~l~  176 (324)
T d2fdsa1          98 EYALIYKMNFAFYIPYGSVGINALKNVFDYL-NSMNIPTMLDMKINDIGNTVKNYRKFIFEYLKSDSCTINVYMGTSMLK  176 (324)
T ss_dssp             GGCSEEEEEGGGTGGGTHHHHHHHHHHHHHH-HHTTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTCSTTHH
T ss_pred             ccccEEeCcHHHHHHhHHHHHHHHHHHHHHh-hccCCcEEEehhhcchHhHHHHHHHHhhccCCCcEEEecccCcHHHHH
Confidence            4555555567777776643222111    11 11234444 99999999999998887754  59999999999999999


Q ss_pred             HHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcC----CCCc
Q psy4093         150 EIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFP----GLIA  225 (434)
Q Consensus       150 ~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~----~gv~  225 (434)
                      ++++...+.. .+++++|+.||++++.+.++...  ......              .....+.+.++|..+.    .+..
T Consensus       177 ~~~~~~~~~~-~kgv~vL~~tSn~~s~~~q~~~~--~~~~~~--------------~~~v~~~~~~~a~~~~~~~~~~~~  239 (324)
T d2fdsa1         177 DICFDYEKNK-YYSAYVLIKTTNKDSFIFQNELS--INDKQA--------------YIVMAEETQKMATDLKIDQNNEFI  239 (324)
T ss_dssp             HHSEETTTTE-ECEEEEEEECSSGGGHHHHTTCE--ETTEEH--------------HHHHHHHHHHHHHHHTTGGGTCCE
T ss_pred             HHHHHHHhcc-CccceeeeecCchHHHHhhhhhc--cCCccc--------------chhHHHHHHHHHHHHHhhcccCCc
Confidence            9986554321 15789999999876654332211  111000              0011245666665532    1355


Q ss_pred             eEEeCc---cchh---hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         226 GLVCQA---PSVL---ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       226 GvVcs~---~e~~---~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      |+||++   .|+.   ...++.+++|||||.+  +   |||  ++||.+|+ +.|+|+||||||||+|+||.+++++|++
T Consensus       240 G~Vvgat~p~el~~iR~~~~~~~iL~PGIGaQ--g---gDq~rv~~~~~a~-~~g~~~ivvgR~I~~A~dp~~aa~~i~~  313 (324)
T d2fdsa1         240 GFVVGSNAFEEMKIIRNKFPDSYILSPGIGAQ--N---GDLYKTLKNGYNK-DYEKLLINVGRAITKSPNPKKSSESYYN  313 (324)
T ss_dssp             EEEECTTCHHHHHHHHHHSTTCCEEECCC----------CHHHHHHHHCCS-SGGGEEEEECHHHHTSSCHHHHHHHHHH
T ss_pred             ceeeccchhHHHHHHHHhCCCCeEEeCcccCC--C---CCHHHHhChhhhh-hcCceEEEeChhhccCCCHHHHHHHHHH
Confidence            777766   3443   4456777899999976  3   456  68999999 8999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q psy4093         298 VMWEAYEQRL  307 (434)
Q Consensus       298 ~~~~a~~~~~  307 (434)
                      +.. +.++.+
T Consensus       314 ~i~-~~~~~~  322 (324)
T d2fdsa1         314 QII-QIFKDI  322 (324)
T ss_dssp             HHH-HHHHHH
T ss_pred             HHH-HHHHHh
Confidence            544 444443

>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.4e-27  Score=226.57  Aligned_cols=106  Identities=36%  Similarity=0.574  Sum_probs=98.6

Q ss_pred             ccChhhhhhhccchhhHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHH-HHHHHHHHHh
Q psy4093         315 VTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEE-VQKELTALAK  393 (434)
Q Consensus       315 ~~~~~~r~~~~~~~~~~~l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~-~v~~L~~la~  393 (434)
                      .++|.||++++.||+++||+++|.+|++|||||||+++.+++++|+++++|+||++|+|+++|.++|++ +.+.+..+++
T Consensus         3 ~~~~~~~~~~~~~~~~~kL~~~m~~Kks~L~vALD~~~~~eal~li~~l~~~v~~~Kig~~lf~~~G~~~~~~~~~~~~~   82 (267)
T d1dqwa_           3 KATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSA   82 (267)
T ss_dssp             CCCHHHHHHHCSCHHHHHHHHHHHHHTCCEEEECCCSSHHHHHHHHHHHGGGCSEEEECGGGCSSCCTTTTHHHHHHHHH
T ss_pred             cccHhHHHhcCCCHHHHHHHHHHHhccCCEEEEeccCCHHHHHHHHHHhCCcceEEEECHHHHhhcChHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999999999999999999999999999999999976 4455677778


Q ss_pred             cCCCeeeecCCCCcchhHHHHHhhcCc
Q psy4093         394 QHEFLRSRNGWFSPILSSFSLRFRDDK  420 (434)
Q Consensus       394 k~gf~iFlDlKf~DIpnTV~~a~~~~~  420 (434)
                      ++||+||+|+|||||||||++|+++-.
T Consensus        83 ~~~~~IflDlK~~DIpnTv~~a~~a~~  109 (267)
T d1dqwa_          83 KYNFLLFEDRKFADIGNTVKLQYSAGV  109 (267)
T ss_dssp             HHTCEEEEEEEECCCHHHHHHHHHSTT
T ss_pred             ccCceEecCccccCCcHHHHHHHHHHH
Confidence            889999999999999999999887754

>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate decarboxylase {Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]

Probab=99.93  E-value=2.7e-27  Score=234.96  Aligned_cols=205  Identities=20%  Similarity=0.173  Sum_probs=135.6

Q ss_pred             ccceecccchhhhccCCCccccccc---hhchhhhHHHh-hhcccCHHHHHHHHHHHhcc--ccceEEEcccCCchhHHH
Q psy4093          77 DFDSVMHYSRKAFSKNGDDTIVPHF---VMAQNVLWSII-ILKLADIGAAVGHQFRLIGE--WAHLVTVHSIAGPGPLQE  150 (434)
Q Consensus        77 Dy~SVMhYg~~aFs~~g~~Ti~~~~---~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~--~~d~vTvH~~~G~~ml~~  150 (434)
                      ||-...+-+.-.|...|..-+....   ..-...++.++ |+|++|||||+..+++.+..  ++|++|||+++|.+||++
T Consensus        96 ~~v~~~Kp~~affe~~G~~G~~~L~~~i~~~~~~g~~VflD~K~gDIgnTv~~ya~a~~~~~~aD~vTVhp~~G~d~l~~  175 (323)
T d2q8za1          96 KYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKD  175 (323)
T ss_dssp             GGCSEEEEEGGGTSTTTHHHHHHHHHHHHHHHHHTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTCSGGGGG
T ss_pred             chhheeecchHHHHHcCcHHHHHHHHHHHhhcccCceEEEeccccchHHHHHHHHHhhcccCCccEEEecccccHHHHHH
Confidence            4455555556666666633222211   00112244445 99999999999988875544  599999999999999999


Q ss_pred             HHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcC---C-CCce
Q psy4093         151 IQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFP---G-LIAG  226 (434)
Q Consensus       151 a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~---~-gv~G  226 (434)
                      +++...+.. .+++++++.||++++.+.+......-....+                ...+.+.++++.+.   . +..|
T Consensus       176 ~~~~~~~~~-~kgv~vl~~tSn~~~~~~q~~~~~~~~~~~~----------------~v~~~~~~~~~~~~~~~~~~~~G  238 (323)
T d2q8za1         176 ICYDEEKNK-YYSAFVLVKTTNPDSAIFQKNLSLDNKQAYV----------------IMAQEALNMSSYLNLEQNNEFIG  238 (323)
T ss_dssp             TSEETTTTE-ECEEEEEEECCSTTTHHHHTTCEETTEEHHH----------------HHHHHHHHHHHHTTTGGGTCCEE
T ss_pred             HHHHHhhcc-ccceeeecccCCchHHHHhhhcccccchhHH----------------HHHHHHHHHHHHHhhhccccccc
Confidence            876553321 1578889988887544322221100000000                01234455555432   2 5889


Q ss_pred             EEeCcc---chh---hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHH
Q psy4093         227 LVCQAP---SVL---ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEV  298 (434)
Q Consensus       227 vVcs~~---e~~---~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~  298 (434)
                      +||++.   |..   ...|+..++|||||.+  +   |||  ++||.+|+ +.|+|+||||||||+|+||.+++++|++ 
T Consensus       239 ~Vvgat~p~e~~~ir~~~~~~~iL~PGIGaQ--g---gDq~rv~t~~~a~-~~g~~~ivvgR~I~~a~dp~~aa~~~~~-  311 (323)
T d2q8za1         239 FVVGANSYDEMNYIRTYFPNCYILSPGIGAQ--N---GDLHKTLTNGYHK-SYEKILINIGRAITKNPYPQKAAQMYYD-  311 (323)
T ss_dssp             EEECTTCHHHHHHHHHHSTTCCEEECCSSTT--C---CCHHHHHHHHCCS-SGGGEEEEECHHHHTSSCHHHHHHHHHH-
T ss_pred             eEEeecchHHHHHHHHhCCCCeEEcCCcccc--C---CCHhHhhCHHHHh-hcCceEEEEChhhcCCCCHHHHHHHHHH-
Confidence            999873   443   3456667899999987  4   355  68999999 8999999999999999999999999998 


Q ss_pred             HHHHHHH
Q psy4093         299 MWEAYEQ  305 (434)
Q Consensus       299 ~~~a~~~  305 (434)
                      +++++++
T Consensus       312 ei~~~l~  318 (323)
T d2q8za1         312 QINAILK  318 (323)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4555543

>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Plasmodium vivax [TaxId: 5855]

Probab=99.92  E-value=4.9e-27  Score=233.89  Aligned_cols=204  Identities=18%  Similarity=0.170  Sum_probs=137.6

Q ss_pred             cccceecccchhhhccCCCccccccc----hhchhhhHHHh-hhcccCHHHHHHHHHHHhcc--ccceEEEcccCCchhH
Q psy4093          76 YDFDSVMHYSRKAFSKNGDDTIVPHF----VMAQNVLWSII-ILKLADIGAAVGHQFRLIGE--WAHLVTVHSIAGPGPL  148 (434)
Q Consensus        76 YDy~SVMhYg~~aFs~~g~~Ti~~~~----~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~--~~d~vTvH~~~G~~ml  148 (434)
                      .||-...+-+..+|...|..-+....    .+ ...++.++ |+|++|||||++.+++.+..  ++|++|||+++|.+||
T Consensus       107 ~~~v~~~Kp~~affe~~G~~G~~~L~~ii~~l-~~~g~~VflD~K~~DIgnTv~~ya~a~~~~~~~DavTVhp~~G~d~l  185 (332)
T d2ffca1         107 KEYALAYKMNFAFYLPYGSLGVDVLKNVFDYL-HHLNVPTILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMGTQML  185 (332)
T ss_dssp             GGGCSEEEEEGGGGSTTTHHHHHHHHHHHHHH-HHHTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTCSTTH
T ss_pred             hhhhhhhcccHHHHHHhhHHHHHHHHHHHHHh-cccccceeehhhhccHHHHHHHHHHHHHhccCCCEEEecccchHHHH
Confidence            45555566667777766643222211    11 12344445 99999999999999997765  5999999999999999


Q ss_pred             HHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhc---CC-CC
Q psy4093         149 QEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSF---PG-LI  224 (434)
Q Consensus       149 ~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a---~~-gv  224 (434)
                      +++++...+.. .+++++++.||++++.+.+....  ......              .....+.+.++++.+   .. +.
T Consensus       186 ~p~~~~~~~~~-~kgv~vL~~tSn~~~~~~q~~~~--~~~~~~--------------~~~~~~~~~~~~~~~~~a~~~~~  248 (332)
T d2ffca1         186 RDICLDEECKR-YYSTFVLVKTTNADSHIFQNRLS--LDGKEA--------------YVVIAEEVQKMAKQLHLEENGEF  248 (332)
T ss_dssp             HHHHBCTTSCC-BCEEEEEEECSSTTTHHHHTTCE--ETTEEH--------------HHHHHHHHHHHHHHTTTGGGTCC
T ss_pred             HHHHHHHHhcc-cccceeecccCcchHHHHHhhcc--cccchh--------------hHHHHHHHHHHHHHHHhhhcccc
Confidence            99876654322 26789999999865433222111  000000              000123444454443   33 58


Q ss_pred             ceEEeCcc---chh---hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093         225 AGLVCQAP---SVL---ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYK  296 (434)
Q Consensus       225 ~GvVcs~~---e~~---~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~  296 (434)
                      .|+||++.   |+.   ...++..++|||||.+  +   |||  ++||.+|+ +.|+|+||||||||+|.||.+++++|+
T Consensus       249 ~G~V~gat~p~e~~~iR~~~~~~~iL~PGIGaQ--g---gDq~rv~t~~~a~-~~ga~~IvvGR~I~~A~dp~~aa~~i~  322 (332)
T d2ffca1         249 VGFVVGANCYDEIKKIRELFPDCYILAPGVGAQ--K---GDLRKMLCNGYSK-NYEKVLINVGRAITKSGSPQQAAREYH  322 (332)
T ss_dssp             EEEEECTTCHHHHHHHHHHCTTCCEEECCBSTT--C---BCHHHHHHHHCCS-SGGGEEEEECHHHHTSSCHHHHHHHHH
T ss_pred             cceeEeechhHHHHHHHHhCCCCeEEeCCcCcC--C---CCHHHHhCHHhHh-hcCceEEEeCccccCCCCHHHHHHHHH
Confidence            89999873   443   3446666899999976  3   355  67999999 999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy4093         297 EVMWEAYE  304 (434)
Q Consensus       297 ~~~~~a~~  304 (434)
                      ++. +..+
T Consensus       323 ~ei-~e~l  329 (332)
T d2ffca1         323 QQI-KEVL  329 (332)
T ss_dssp             HHH-HHHH
T ss_pred             HHH-HHHH
Confidence            844 4443

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=1.7e-19  Score=170.70  Aligned_cols=79  Identities=14%  Similarity=0.113  Sum_probs=74.2

Q ss_pred             cCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhcC
Q psy4093         340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDD  419 (434)
Q Consensus       340 k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~~  419 (434)
                      |++++|||||+++.+++++++++++|+||++|+|.++|.++|++++++|+    +++|+||+|+|||||||||+.++.+.
T Consensus         2 ~~~~~IvALD~~~~~~al~i~~~~~~~i~~iKvG~~l~~~~G~~~i~~l~----~~~~~IflD~K~~DIgnTv~~~~~~~   77 (237)
T d1dbta_           2 KNNLPIIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLK----ERNCELFLDLKLHDIPTTVNKAMKRL   77 (237)
T ss_dssp             CCSSCEEECCCSSHHHHHHHTGGGTTSCCEEEECHHHHHHHTHHHHHHHH----HTTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred             CCCCeEEEeccCCHHHHHHHHHHcCCcccEEEECHHHHhhcCHHHHHHHH----hcchheehhhhhccCchHHHHHHHhh
Confidence            56778999999999999999999999999999999999999999999995    48999999999999999999999887


Q ss_pred             ccc
Q psy4093         420 KTL  422 (434)
Q Consensus       420 ~~~  422 (434)
                      ++.
T Consensus        78 ~~~   80 (237)
T d1dbta_          78 ASL   80 (237)
T ss_dssp             HTT
T ss_pred             hcc
Confidence            654

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=8.2e-19  Score=165.11  Aligned_cols=77  Identities=22%  Similarity=0.233  Sum_probs=71.8

Q ss_pred             CCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhcCc
Q psy4093         341 KSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDDK  420 (434)
Q Consensus       341 ~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~~~  420 (434)
                      .++||||||+++.+++++++++++|+||++|+|.+||.++|++++++|+    ++||+||+|+|||||||||..+++.-.
T Consensus         3 ~~~iivALD~~~~~eal~i~~~l~~~i~~iKiG~~l~~~~G~~~i~~l~----~~~~~if~D~K~~DI~nt~~~~~~~~~   78 (231)
T d1eixa_           3 NSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQ----QRGFDIFLDLKFHDIPNTAAHAVAAAA   78 (231)
T ss_dssp             CCCEEEEECCSSHHHHHHHHTTSCTTTCEEEEEHHHHHHHHHHHHHHHH----HTTCCEEEEEEECSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhCCcceEEEECHHHHhhcCHHHHHHHH----hcCchhhHhhHhhcCcHHHHHHHHhhh
Confidence            4679999999999999999999999999999999999999999999985    489999999999999999999987654


Q ss_pred             c
Q psy4093         421 T  421 (434)
Q Consensus       421 ~  421 (434)
                      .
T Consensus        79 ~   79 (231)
T d1eixa_          79 D   79 (231)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1e-18  Score=158.76  Aligned_cols=179  Identities=18%  Similarity=0.171  Sum_probs=110.5

Q ss_pred             cceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhccccceEEEcccCCchhHHHHHHHhh
Q psy4093          78 FDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISD  156 (434)
Q Consensus        78 y~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~~  156 (434)
                      +-.+|+.|...+...|...+.......  ..+.++ |+|++|+|+|+..++.  ..|+|++|||+.+|.++++++++.++
T Consensus        26 ~vdiikig~~~~~~~G~~~i~~l~~~~--~~~~i~~d~k~~d~~~~~~~~~~--~~gad~vtvh~~~g~~~~~~~~~~~~  101 (213)
T d1q6oa_          26 EVDIIEVGTILCVGEGVRAVRDLKALY--PHKIVLADAKIADAGKILSRMCF--EANADWVTVICCADINTAKGALDVAK  101 (213)
T ss_dssp             GCSEEEECHHHHHHHCTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHH--HTTCSEEEEETTSCHHHHHHHHHHHH
T ss_pred             CccEEEeCeeccccCCHHHHHHHHHhc--ccccceeEEeeccchHHHHHHHH--HcCCCEEEEeccCCchHHHHHHHHHH
Confidence            445666666666555655554432221  122334 9999999999877543  34899999999999999999999887


Q ss_pred             hhCCCCceEEEEEeCCCCCCC-hHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchh
Q psy4093         157 ELGEDRGVFLIAQLSCQGNLI-DEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVL  235 (434)
Q Consensus       157 ~~~~~~~v~~v~~lss~~sl~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~  235 (434)
                      +.+   ..++++.+++ ++.. ...+.+.+            +...           +..++...  +..|.+++..+..
T Consensus       102 ~~~---~~~~v~~~~~-~~~~~~~~~~~~~------------~~~~-----------~~~~~~~~--g~~~~~~~~~~l~  152 (213)
T d1q6oa_         102 EFN---GDVQIELTGY-WTWEQAQQWRDAG------------IGQV-----------VYHRSRDA--QAAGVAWGEADIT  152 (213)
T ss_dssp             HTT---CEEEEEECSC-CCHHHHHHHHHTT------------CCEE-----------EEECCHHH--HHTTCCCCHHHHH
T ss_pred             HcC---CceecccCCC-CCHHHHHHHHHhH------------HHHH-----------HHHHhccc--CcCCeeCCHHHHH
Confidence            665   2345555554 2211 11221111            1100           01111111  2345556554432


Q ss_pred             ----hcCCCc-eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         236 ----ASNPGL-LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       236 ----~~~~~~-l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                          ..+..+ +.+.+|+++           .||.+|+ ++|||++||||+||+|+||.+++++|++ .+++
T Consensus       153 ~i~~~~~~~~~i~~~gGi~~-----------~~~~~~~-~~Gad~iVVGr~I~~a~dp~~a~~~~~~-~i~~  211 (213)
T d1q6oa_         153 AIKRLSDMGFKVTVTGGLAL-----------EDLPLFK-GIPIHVFIAGRSIRDAASPVEAARQFKR-SIAE  211 (213)
T ss_dssp             HHHHHHHTTCEEEEESSCCG-----------GGGGGGT-TSCCSEEEESHHHHTSSCHHHHHHHHHH-HHHH
T ss_pred             HHHHhhccCceEecCCCcCc-----------CCHHHHH-HcCCCEEEEChhhcCCCCHHHHHHHHHH-HHHH
Confidence                223333 334555554           4899999 9999999999999999999999999998 4443

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.63  E-value=5.3e-17  Score=150.71  Aligned_cols=74  Identities=18%  Similarity=0.117  Sum_probs=68.4

Q ss_pred             CcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         342 SNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       342 s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      ++||||||+++.++++++++++++++|++|+|.++|.++|++.+++|+   ++++|+||+|+||||||||+..+++.
T Consensus         3 ~ki~lAlD~~~~~~a~~l~~~~~~~v~~iKig~~l~~~~G~~~v~~l~---~~~~~~i~~D~K~~DIg~t~~~~~~~   76 (212)
T d1km4a_           3 NRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFR---KRFGCRIIADFAVADIPETNEKICRA   76 (212)
T ss_dssp             GGEEEEECCSSHHHHHHHHHHHTTTCSEEEEEHHHHHHHCTHHHHHHH---HHHCCEEEEEEEECSCHHHHHHHHHH
T ss_pred             CCeEEEecCCCHHHHHHHHHHhCCCCcEEEECHHHHHhcCHHHHHHHH---HhcccceehhhhhhccccHHHHhHhh
Confidence            469999999999999999999999999999999999999999998885   46799999999999999999877653

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=5.8e-17  Score=149.57  Aligned_cols=72  Identities=14%  Similarity=0.176  Sum_probs=67.1

Q ss_pred             EEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       344 LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      ||||||+++.+++++++++++++|+++|+|.++|.++|++++++|++   ++||+||+|+|||||||||..+++.
T Consensus         2 l~vALD~~~~~~a~~~~~~l~~~v~~iKvG~~l~~~~G~~~i~~l~~---~~~~~if~DlK~~Di~~t~~~~~~~   73 (206)
T d2czda1           2 IVLALDVYEGERAIKIAKSVKDYISMIKVNWPLILGSGVDIIRRLKE---ETGVEIIADLKLADIPNTNRLIARK   73 (206)
T ss_dssp             EEEECCCCSHHHHHHHHHHHGGGCSEEEEEHHHHHHHCTTHHHHHHH---HHCCEEEEEEEECSCHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHhCCcccEEEECHHHHhhcCHHHHHHHHH---hcCCeEEEEeeeeeecccchheehh
Confidence            79999999999999999999999999999999999999999998864   5799999999999999999877643

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=6.8e-16  Score=142.53  Aligned_cols=67  Identities=15%  Similarity=0.223  Sum_probs=58.3

Q ss_pred             cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      +.|+|||+.++   ++|+++++ .++++|||.+|+. .|++++++|+    ++||+||+|||||||||||++++++
T Consensus         2 ~~ilaLD~~~~---~~~~~~~~-~~~~vKvG~~l~~-~G~~~i~~l~----~~~~~IflDlK~~DIpnTv~~~v~~   68 (198)
T d1vqta1           2 TPVLSLDMEDP---IRFIDENG-SFEVVKVGHNLAI-HGKKIFDELA----KRNLKIILDLKFCDIPSTVERSIKS   68 (198)
T ss_dssp             EEEEECCSSSH---HHHHHHHC-CCSEEEECHHHHT-TCTHHHHHHH----TTTCEEEEEEEECSCHHHHHHHHHH
T ss_pred             CcEEEcCchhH---HHHHHHcC-CCCEEEECHHHHh-ccHHHHHHHH----HCCCcEEEEehhcCccHHHHHHHHH
Confidence            36999999865   55677876 6999999999986 6999999985    5899999999999999999999875

>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Astacin
domain: Astacin
species: European fresh water crayfish (Astacus astacus) [TaxId: 6715]

Probab=99.56  E-value=3.2e-16  Score=144.93  Aligned_cols=61  Identities=25%  Similarity=0.211  Sum_probs=49.7

Q ss_pred             ccccccccCCCCcccCccccccceecccchhhhccCC--Cccccccc------hhchhhhHHHhhhcccCH
Q psy4093          57 TERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNG--DDTIVPHF------VMAQNVLWSIIILKLADI  119 (434)
Q Consensus        57 ~~~NF~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~g--~~Ti~~~~------~igqr~~~si~dlKl~DI  119 (434)
                      ..+||+|++..  ..+|.||||+|||||++++||+||  .+||+|++      .+|||..+|..|++..+.
T Consensus       124 ~~~nF~~~~~~--~~~g~~YDy~SIMHY~~~afs~n~~~~~Ti~~~~~~~~~~~~gqr~~lS~~Di~~in~  192 (200)
T d1asta_         124 MTSNFDIDTYS--RYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDPYDKAHMLQTDANQINN  192 (200)
T ss_dssp             SGGGGCCCSSE--ECCSCCCCTTCTTCCCTTTTBTTTTTSCSEEESSTTCCCCCGGGCSSCCHHHHHHHHH
T ss_pred             hhhhhhhcccc--cccccccCccchhcccccccccCCCCCCcceECCCCccccCcccccCCCHHHHHHHHH
Confidence            56799998765  458999999999999999999996  57999875      378888888777665433

>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Plasmodium vivax [TaxId: 5855]

Probab=99.41  E-value=1.7e-14  Score=142.73  Aligned_cols=133  Identities=8%  Similarity=-0.021  Sum_probs=92.9

Q ss_pred             CEEEeCCcccCCCCHHHHHHHHHHHHHHHH---HHHHhhcccccccChhhhhhhc-cchhhHHHHHHhhhcCCcEEEEec
Q psy4093         274 DLGVVGRGITQAPDPVEAARRYKEVMWEAY---EQRLKKENSRIVTPFETRKADV-KCRISSTLLDIMVKKKSNLCVALD  349 (434)
Q Consensus       274 D~IVVGR~It~A~DP~~aa~~i~~~~~~a~---~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~l~~~m~~k~s~LivAlD  349 (434)
                      ..+.||..    +||...-.-++++.-+-|   .+...        .|..|++.. .+|..++||.++..++.+|+..-|
T Consensus        15 s~lcvGlD----P~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (332)
T d2ffca1          15 TCLCIGLD----PDEADIKSFMQSEKQNGYQSVKKNLS--------NSGSSSSSSNSSSGKGELFAPQMGGQMLLAETPP   82 (332)
T ss_dssp             CCEEEEEC----CCHHHHHHHHHHHHHHTSHHHHHHHH--------SCC-------------CCCCCSSSHHHHHC-CCC
T ss_pred             CeEEEeeC----CChHHChhhhcccccccccccccccc--------cccchhhhccccccchhhhhhhcccccccccccc
Confidence            45777754    456655555555433332   23333        344444433 347999999999999999999999


Q ss_pred             CCCHHH----------HHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHH---HhcCCCeeeecCCCCcchhHHHHHh
Q psy4093         350 VTQAKD----------LLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTAL---AKQHEFLRSRNGWFSPILSSFSLRF  416 (434)
Q Consensus       350 ~~~~~~----------al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~l---a~k~gf~iFlDlKf~DIpnTV~~a~  416 (434)
                      ....++          .+++++.+.|+||++|.++++|.++|++.++.|+++   ++++|++||+|+|||||||||+++.
T Consensus        83 ~~~~~~~~~~~~~~~f~~~iIdat~~~v~~~Kp~~affe~~G~~G~~~L~~ii~~l~~~g~~VflD~K~~DIgnTv~~ya  162 (332)
T d2ffca1          83 KEAQEKDEFFYFFNHFCFYIINETKEYALAYKMNFAFYLPYGSLGVDVLKNVFDYLHHLNVPTILDIKMNDIGNTVKHYR  162 (332)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHHGGGCSEEEEEGGGGSTTTHHHHHHHHHHHHHHHHHTCCEEEEEEECCCHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHhhhhhhhhcccHHHHHHhhHHHHHHHHHHHHHhcccccceeehhhhccHHHHHHHHH
Confidence            988886          778999999999999999999999998776655543   5568999999999999999999876


Q ss_pred             hc
Q psy4093         417 RD  418 (434)
Q Consensus       417 ~~  418 (434)
                      ++
T Consensus       163 ~a  164 (332)
T d2ffca1         163 KF  164 (332)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate decarboxylase {Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]

Probab=99.41  E-value=1.1e-13  Score=136.26  Aligned_cols=60  Identities=5%  Similarity=-0.104  Sum_probs=52.8

Q ss_pred             HHHHHhCCceeEEeEceeeeecCCHHHHHHHHHH---HhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093         358 TLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTAL---AKQHEFLRSRNGWFSPILSSFSLRFR  417 (434)
Q Consensus       358 ~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~l---a~k~gf~iFlDlKf~DIpnTV~~a~~  417 (434)
                      ++++.+.|++|++|+|+.+|.++|++.++.|+++   ++++|++||+|+|||||||||+.+.+
T Consensus        89 ~iida~~~~v~~~Kp~~affe~~G~~G~~~L~~~i~~~~~~g~~VflD~K~gDIgnTv~~ya~  151 (323)
T d2q8za1          89 YIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRK  151 (323)
T ss_dssp             HHHHHHGGGCSEEEEEGGGTSTTTHHHHHHHHHHHHHHHHHTCCEEEEEEECCCHHHHHHHHH
T ss_pred             HHHHHhhchhheeecchHHHHHcCcHHHHHHHHHHHhhcccCceEEEeccccchHHHHHHHHH
Confidence            5899999999999999999999998877666554   56789999999999999999987554

>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium berghei [TaxId: 5821]

Probab=99.40  E-value=1.5e-13  Score=135.32  Aligned_cols=62  Identities=5%  Similarity=-0.096  Sum_probs=53.7

Q ss_pred             HHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHH---HhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         357 LTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTAL---AKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       357 l~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~l---a~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      .++++.+.+++|++|+|+++|..+|++.++.|+++   ++++|++||+|+|||||||||+++.++
T Consensus        90 ~~iIda~~~~v~~~K~~lafFe~~G~~G~~~L~~~i~~l~~~g~~VflDlK~~DIpnTv~~ya~a  154 (324)
T d2fdsa1          90 FYIINNTKEYALIYKMNFAFYIPYGSVGINALKNVFDYLNSMNIPTMLDMKINDIGNTVKNYRKF  154 (324)
T ss_dssp             HHHHHHHGGGCSEEEEEGGGTGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHhhccccEEeCcHHHHHHhHHHHHHHHHHHHHHhhccCCcEEEehhhcchHhHHHHHHHH
Confidence            56899999999999999999999998876665543   556899999999999999999986553

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=3.1e-13  Score=121.91  Aligned_cols=75  Identities=15%  Similarity=0.073  Sum_probs=69.1

Q ss_pred             CcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093         342 SNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRD  418 (434)
Q Consensus       342 s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~  418 (434)
                      ++||||+|+++.+++++++++++++|+++|+|.+++.++|++++++|++..  .++++|+|+|++|||+|+..++..
T Consensus         2 p~l~vAlD~~~~~~~~~~~~~~~~~vdiikig~~~~~~~G~~~i~~l~~~~--~~~~i~~d~k~~d~~~~~~~~~~~   76 (213)
T d1q6oa_           2 PMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALY--PHKIVLADAKIADAGKILSRMCFE   76 (213)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHH
T ss_pred             CcEEEEecCCCHHHHHHHHHhcCCCccEEEeCeeccccCCHHHHHHHHHhc--ccccceeEEeeccchHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999997632  489999999999999999887644

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.22  E-value=0.0046  Score=56.01  Aligned_cols=44  Identities=23%  Similarity=0.329  Sum_probs=38.2

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +.|-.||+..           |..+.. ++|||.+|+|++|.+++||.++++++|+
T Consensus       173 I~VDGGIn~~-----------~i~~l~-~aGad~iV~GS~if~~~d~~~~i~~Lr~  216 (221)
T d1tqxa_         173 IQVDGGLNIE-----------TTEISA-SHGANIIVAGTSIFNAEDPKYVIDTMRV  216 (221)
T ss_dssp             EEEESSCCHH-----------HHHHHH-HHTCCEEEESHHHHTCSSHHHHHHHHHH
T ss_pred             eEEEcccCHH-----------hHHHHH-HcCCCEEEEChHHHCCCCHHHHHHHHHH
Confidence            3456777764           678888 9999999999999999999999999997

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.68  E-value=0.013  Score=52.76  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=38.8

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +.|-.||+..           |..+.+ ++|||.+|+|+.|.+++||.++.+++|+
T Consensus       171 I~vDGGIn~~-----------~i~~l~-~aGad~~V~Gsaif~~~d~~~~i~~lr~  214 (217)
T d2flia1         171 IEVDGGVDNK-----------TIRACY-EAGANVFVAGSYLFKASDLVSQVQTLRT  214 (217)
T ss_dssp             EEEESSCCTT-----------THHHHH-HHTCCEEEESHHHHTSSCHHHHHHHHHH
T ss_pred             EEEeCCCCHH-----------HHHHHH-HCCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence            3567888854           778999 9999999999999999999999999887

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=94.35  E-value=0.021  Score=51.45  Aligned_cols=41  Identities=37%  Similarity=0.489  Sum_probs=37.7

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQ  305 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~  305 (434)
                      +..++. +.|+|.|.|.+.|.+++||.++++++++ .|++|++
T Consensus       184 ni~~l~-~~Ga~giAvis~I~~a~dp~~~~~~~~~-~~~~~k~  224 (226)
T d2tpsa_         184 NAAPVI-QAGADGVSMISAISQAEDPESAARKFRE-EIQTYKT  224 (226)
T ss_dssp             TSHHHH-HTTCSEEEESHHHHTSSCHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHH-HhCCCEEEEhHHhhcCCCHHHHHHHHHH-HHHHHHc
Confidence            558888 9999999999999999999999999997 8888875

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.32  E-value=0.016  Score=52.20  Aligned_cols=45  Identities=20%  Similarity=0.241  Sum_probs=38.5

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEV  298 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~  298 (434)
                      +.|-.||+..           |..+.+ ++|||.+|+|+.|.+++||.++.+++|+.
T Consensus       171 I~VDGGIn~~-----------~i~~l~-~aGad~~V~GS~if~~~d~~~~i~~lr~~  215 (220)
T d1h1ya_         171 IEVDGGLGPS-----------TIDVAA-SAGANCIVAGSSIFGAAEPGEVISALRKS  215 (220)
T ss_dssp             EEEESSCSTT-----------THHHHH-HHTCCEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred             EEEEecCCHH-----------HHHHHH-HCCCCEEEECHHHHCCCCHHHHHHHHHHH
Confidence            3456777754           778899 99999999999999999999999999873

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=93.45  E-value=0.023  Score=51.34  Aligned_cols=44  Identities=25%  Similarity=0.378  Sum_probs=38.4

Q ss_pred             eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      +.|-.||+..           |....+ ++|||.+|+|..|.+++||.++.+++|+
T Consensus       174 I~VDGGIn~~-----------~i~~l~-~~Gad~~V~GS~if~~~d~~~~i~~lr~  217 (221)
T d1tqja_         174 IEVDGGLKPN-----------NTWQVL-EAGANAIVAGSAVFNAPNYAEAIAGVRN  217 (221)
T ss_dssp             EEEESSCCTT-----------TTHHHH-HHTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred             EEEECCcCHH-----------HHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHHHh
Confidence            4566788864           678999 9999999999999999999999998886

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=92.75  E-value=0.058  Score=47.48  Aligned_cols=38  Identities=21%  Similarity=0.226  Sum_probs=34.2

Q ss_pred             CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093         263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA  302 (434)
Q Consensus       263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a  302 (434)
                      +..+++ +.|+|.+.|++.|++++||.++++++++ .|+.
T Consensus       166 ni~~~~-~~Ga~gvAvis~I~~~~dp~~~~~~l~~-~~~~  203 (206)
T d1xi3a_         166 NAREVL-KTGVDGIAVISAVMGAEDVRKATEELRK-IVEE  203 (206)
T ss_dssp             THHHHH-TTTCSEEEESHHHHTSSSHHHHHHHHHH-HHHH
T ss_pred             HHHHHH-HhCCCEEEEhHHHHCCCCHHHHHHHHHH-HHHH
Confidence            568889 9999999999999999999999999997 6654

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=92.48  E-value=0.094  Score=47.77  Aligned_cols=35  Identities=31%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             CCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         262 NGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       262 ~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      ..-.+|+ ++||.-+++||.|.+++||.+.+++++.
T Consensus       213 ~~~~~a~-~~Ga~G~~~GRni~q~~~p~~~~~al~~  247 (251)
T d1ojxa_         213 KQVEGVL-EAGALGIAVGRNVWQRRDALKFARALAE  247 (251)
T ss_dssp             HHHHHHH-HTTCCEEEESHHHHTSTTHHHHHHHHHH
T ss_pred             HHHHHHH-HCCCcEEeechhhhCcCcHHHHHHHHHH
Confidence            5667889 8999999999999999999999998875

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=92.20  E-value=0.046  Score=49.62  Aligned_cols=43  Identities=30%  Similarity=0.380  Sum_probs=37.5

Q ss_pred             EecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         243 QLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       243 ~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      .|-.||+..           |..+.+ ++|||.+|+|..|.+++||.++.+++|.
T Consensus       183 ~vDGGIn~~-----------~i~~l~-~~Gad~~V~GS~if~~~d~~~~i~~lk~  225 (230)
T d1rpxa_         183 EVDGGVGPK-----------NAYKVI-EAGANALVAGSAVFGAPDYAEAIKGIKT  225 (230)
T ss_dssp             EEESSCCTT-----------THHHHH-HHTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred             EEECCcCHH-----------HHHHHH-HcCCCEEEEChHHHCCCCHHHHHHHHHH
Confidence            466788864           778899 9999999999999999999999888875

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.75  E-value=2.2  Score=36.54  Aligned_cols=31  Identities=39%  Similarity=0.475  Sum_probs=25.5

Q ss_pred             CHHH---HHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093         263 GPTD---VITLRGADLGVVGRGITQAPDPVEAARRYKE  297 (434)
Q Consensus       263 TP~~---Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~  297 (434)
                      ||++   |+ +.|||.++||++|+   +|...+++|.+
T Consensus       194 t~~d~~~al-~~GAd~V~vGsAi~---~p~~i~~~~~~  227 (230)
T d1yxya1         194 SPEEAKKIN-DLGVAGIVVGGAIT---RPKEIAERFIE  227 (230)
T ss_dssp             SHHHHHHHH-TTCCSEEEECHHHH---CHHHHHHHHHH
T ss_pred             CHHHHHHHH-HcCCCEEEEChhhc---CHHHHHHHHHH
Confidence            5554   56 67999999999998   69888888776

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.62  E-value=0.36  Score=43.83  Aligned_cols=39  Identities=36%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             CHHHH---HHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093         263 GPTDV---ITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY  303 (434)
Q Consensus       263 TP~~A---i~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~  303 (434)
                      ||++|   . +.|+|-+-||-+|.+|.||.+.|+.|.+ .-..|
T Consensus       200 tpadaa~~M-elG~dgV~v~s~I~~s~dP~~~a~A~~~-Avt~~  241 (254)
T d1znna1         200 TPADAALMM-HLGADGVFVGSGIFKSENPEKYARAIVE-ATTHY  241 (254)
T ss_dssp             SHHHHHHHH-HTTCSEEEECGGGGGSSCHHHHHHHHHH-HHHTT
T ss_pred             ChhhHHHHH-HcCCCEEEEcchhhcCCCHHHHHHHHHH-HHHcc
Confidence            56665   6 7999999999999999999999999987 44333