Psyllid ID: psy414

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MNKLRVLSQVKSLGKVLSLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSPKYQKGVVHYGYHQK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccHHHcccccccccccccccccccccHcccccccccccHHHHcccccccccccHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccc
Coil and Loop (DISEMBL)
MNKLRVLSQVKSLGKVLSLQQNSVrtafvytpdwlpgerpktEEERRKAAKKYnllpeeyevqpddgfatgdyphlphthydsrdpfypwdypmfrtnygeplpndfaishygmgfneqpvNQRISVWEQLAYMVGILGTISLVLKYFCWekryyypkfdspkyqkgvvhygyhqk
Flexible Loop (DISEMBL)
MNKLRVLSQVKSLGkvlslqqnsvrtafvytpdwlpgerpkteeeRRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYypkfdspkyqkgVVHYGYHQK
Low Complexity Region (SEG)
MNKLRVLSQVKSLGKVLSLQQNSVRTAFVYTPDWLPGerpkteeerrkaakkYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSPKYQKGVVHYGYHQK
Disordered region (IsUnstruct)
************LGKVLSLQQNSVRTAFVYTPDWL*******************************GFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSPKYQKGVVHYGY***
Disordered Region (DISOPRED)
**************KVLSLQQNSVRTAFVYTPDWLPGERPK*****RKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSPKYQKGVVHYG*H**
Disordered Region (DISEMBL)
MNKLRVLSQVKSLGKVLSLQQNSVRTAFVYTPDWLPGE***********AKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSPKYQKGVVHYGYHQK
Disordered Region (DISPRO)
**KLRVLSQVKSLGKVLSLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSPKYQKGVVHYGYHQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNKLRVLSQVKSLGKVLSLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSPKYQKGVVHYGYHQK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q02372	186	NADH dehydrogenase [ubiqu	yes	N/A	0.460	0.435	0.555	5e-17
P0CB85	186	NADH dehydrogenase [ubiqu	yes	N/A	0.710	0.672	0.380	6e-17
Q9D6J5	186	NADH dehydrogenase [ubiqu	yes	N/A	0.494	0.467	0.505	1e-16
Q0MQE7	186	NADH dehydrogenase [ubiqu	yes	N/A	0.681	0.645	0.379	2e-16
Q0MQE6	186	NADH dehydrogenase [ubiqu	N/A	N/A	0.772	0.731	0.359	2e-16
P0CB86	186	NADH dehydrogenase [ubiqu	N/A	N/A	0.710	0.672	0.380	2e-16
O95169	186	NADH dehydrogenase [ubiqu	yes	N/A	0.460	0.435	0.530	2e-16

>sp|Q02372|NDUB8_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Bos taurus GN=NDUFB8 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 51/81 (62%)

Query: 23  SVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYD 82
             RTA   T D LPG  PKT EER  AAKKYN+  E+YE  PDDG   GDYP LP     
Sbjct: 25  GARTASHITKDMLPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGTGYGDYPKLPDRSQQ 84

Query: 83  SRDPFYPWDYPMFRTNYGEPL 103
            RDP+Y WD+P  R N+GEP+
Sbjct: 85  ERDPWYDWDHPDLRLNWGEPM 105

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Bos taurus (taxid: 9913)

>sp|P0CB85|NDUB8_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Pongo abelii GN=NDUFB8 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 68/134 (50%), Gaps = 9/134 (6%)

Query: 23  SVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYD 82
             RTA   T D  PG  P+T EER  AAKKYN+  E+YE  PDDG   GDYP LP     
Sbjct: 25  GARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQH 84

Query: 83  SRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMG-FNEQPVNQRISVWEQLAYMVGILGTI 141
            RDP+Y WD P  R N+GEP+       H+ +  FN   V+    +       + + G +
Sbjct: 85  ERDPWYSWDQPDLRLNWGEPM-------HWHLDMFNRNRVDTSPILVSWNVMCMQLFGFL 137

Query: 142 SLVLKYFCWEKRYY 155
           + ++ + CW    Y
Sbjct: 138 AFMI-FMCWVGEVY 150

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q9D6J5|NDUB8_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Mus musculus GN=Ndufb8 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 53/87 (60%)

Query: 23  SVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYD 82
             R AF  T D LPG  P+T EER  AAKKYN+  E+YE  PDDG   GDYP LP+    
Sbjct: 25  EARRAFHMTKDMLPGSYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPMLPNRSQH 84

Query: 83  SRDPFYPWDYPMFRTNYGEPLPNDFAI 109
            RDP+Y WD+   R N+GEP+  D  +
Sbjct: 85  ERDPWYQWDHSELRMNWGEPIHWDLDM 111

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|Q0MQE7|NDUB8_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Pan troglodytes GN=NDUFB8 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 67/129 (51%), Gaps = 9/129 (6%)

Query: 23  SVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYD 82
             RTA   T D  PG  P+T EER  AAKKYN+  E+YE  PDDG   GDYP LP     
Sbjct: 25  GARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQH 84

Query: 83  SRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMG-FNEQPVNQRISVWEQLAYMVGILGTI 141
            RDP+Y WD P  R N+GEP+       H+ +  +N   V+   +        + + G +
Sbjct: 85  ERDPWYSWDQPGLRLNWGEPM-------HWHLDMYNRNRVDTSPTPLSWHVMCMQLFGFL 137

Query: 142 SLVLKYFCW 150
           + ++ + CW
Sbjct: 138 AFMI-FMCW 145

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q0MQE6|NDUB8_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFB8 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 17/153 (11%)

Query: 6   VLSQVKSLGKVLSLQQNS-------VRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPE 58
            +++ + LG V  LQ+ S        RTA   T D  PG  P+T EER  AAKKYN+  E
Sbjct: 2   AVARARVLG-VQWLQRASRNVMPLGARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVE 60

Query: 59  EYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMG-FN 117
           +YE  PDDG   GDYP LP      RDP+Y WD P  R N+GEP+       H+ +  +N
Sbjct: 61  DYEPYPDDGMGYGDYPKLPDRSQHERDPWYSWDQPGLRLNWGEPM-------HWHLDMYN 113

Query: 118 EQPVNQRISVWEQLAYMVGILGTISLVLKYFCW 150
              V+   +        + + G ++ ++ + CW
Sbjct: 114 RNRVDTSPTPISWHVMCMQLFGFLAFMI-FMCW 145

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|P0CB86|NDUB8_PONPY NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Pongo pygmaeus GN=NDUFB8 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 9/134 (6%)

Query: 23  SVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYD 82
             RTA   T D  PG  P+T EER  AAKKYN+  E+YE  PDDG   GDYP LP     
Sbjct: 25  GARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQH 84

Query: 83  SRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMG-FNEQPVNQRISVWEQLAYMVGILGTI 141
            RDP+Y WD P  R N+GEP+       H+ +  FN   V+            + + G +
Sbjct: 85  ERDPWYSWDQPDLRLNWGEPM-------HWHLDMFNRNRVDTSPIPVSWNVMCMQLFGFL 137

Query: 142 SLVLKYFCWEKRYY 155
           + ++ + CW    Y
Sbjct: 138 AFMI-FMCWVGEVY 150

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|O95169|NDUB8_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Homo sapiens GN=NDUFB8 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 49/81 (60%)

Query: 23  SVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYD 82
             RTA   T D  PG  P+T EER  AAKKYN+  E+YE  PDDG   GDYP LP     
Sbjct: 25  GARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQH 84

Query: 83  SRDPFYPWDYPMFRTNYGEPL 103
            RDP+Y WD P  R N+GEP+
Sbjct: 85  ERDPWYSWDQPGLRLNWGEPM 105

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
242247187	174	NADH dehydrogenase [ubiquinone] 1 beta s	0.795	0.804	0.431	6e-18
321472407	176	hypothetical protein DAPPUDRAFT_301888 [	0.823	0.823	0.392	7e-18
332376729	172	unknown [Dendroctonus ponderosae]	0.960	0.982	0.355	9e-18
148227580	168	uncharacterized protein LOC100036987 [Xe	0.517	0.541	0.505	2e-16
242014087	144	NADH-Ubiquinone oxidoreductase ASHI subu	0.545	0.666	0.489	2e-16
133737016	189	LOC100049132 protein [Xenopus laevis]	0.755	0.703	0.392	2e-16
89267845	196	NADH dehydrogenase (ubiquinone) 1 beta s	0.602	0.540	0.429	4e-16
134024124	197	LOC733466 protein [Xenopus (Silurana) tr	0.602	0.538	0.429	4e-16
157822261	186	NADH dehydrogenase [ubiquinone] 1 beta s	0.539	0.510	0.485	6e-16
225716906	188	NADH dehydrogenase 1 beta subcomplex sub	0.602	0.563	0.472	9e-16

>gi|242247187|ref|NP_001156170.1| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Acyrthosiphon pisum] gi|239789402|dbj|BAH71327.1| ACYPI004623 [Acyrthosiphon pisum]

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 34  WLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYP 93
           W PG  PKTEEER  AAKKY LLPEEYE  PDDG   GDYP LP    DS+  +YPWD P
Sbjct: 30  WKPGPYPKTEEERLAAAKKYGLLPEEYEPHPDDGLGFGDYPKLPDIGQDSKSEYYPWDCP 89

Query: 94  MFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQ-LAYMVGILGTISLVLKYFCWEK 152
               N+GE +     +     G        R   W++ L+   G+ G   L+L    W K
Sbjct: 90  EHNRNFGEIMHVHADMWGSDKGDPNYKEKARFPDWQRVLSLFAGVFGISGLMLSGDYWCK 149

Query: 153 RY--YYPKFDSPKYQKGVVHYGYHQK 176
           RY  Y PK   P  Q+ V H+ Y  K
Sbjct: 150 RYRPYMPK-QWP--QENVKHFTYSDK 172

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|321472407|gb|EFX83377.1| hypothetical protein DAPPUDRAFT_301888 [Daphnia pulex]

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 78/153 (50%), Gaps = 8/153 (5%)

Query: 24  VRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDS 83
           VR A  +  DW PG  PKT+ ER  AAKKY +LP++YE  PDDG   GDYP LP    D 
Sbjct: 25  VRLAGYWNKDWKPGPYPKTDAERIAAAKKYGMLPQDYEPYPDDGLGYGDYPKLPLISNDM 84

Query: 84  RDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRI--SVWEQLAYMVGILGTI 141
           +DP Y WD P  + NYGEP+      + Y     E+  N RI  +    L+  +GI+G  
Sbjct: 85  KDPLYNWDMPDLKRNYGEPI-----HTQYDAYVEERLSNARIQYTPMYMLSRFLGIMGAF 139

Query: 142 SLVLKYFCWEKRYYYPKFDSPKYQK-GVVHYGY 173
             V   F +   Y    +  P+  K G  HY +
Sbjct: 140 LAVHLLFEYNDWYLKHPWTPPQLLKEGKTHYTF 172

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376729|gb|AEE63504.1| unknown [Dendroctonus ponderosae]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 92/177 (51%), Gaps = 8/177 (4%)

Query: 1   MNKLRVLSQVKSLGKV-LSLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEE 59
           MN L   ++ K+L +  LS    +VR    +  D+ PG  PKT+EER  AAKKY +  EE
Sbjct: 1   MNSLTKGAKWKALWRQGLSPTTTAVRHH--WNKDYKPGPFPKTQEERELAAKKYGVPIEE 58

Query: 60  YEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDF-AISHYGMGFNE 118
           YE  PDDG   GDYP LP    +++DPFYPWD P  + N+GE L  DF A++   +  N 
Sbjct: 59  YEPYPDDGSGAGDYPKLPMISAENKDPFYPWDNPELKRNFGETLHEDFDALTEDRLDVNR 118

Query: 119 QPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSPKYQKGVVHYGYHQ 175
           Q     + +W+ +A    + G ++ ++  F    + Y          +G  HY + Q
Sbjct: 119 Q---FHLPLWQLVAQFFAVTGGLAALI-LFAQPFKMYRAAVPPQYPNQGKTHYSFEQ 171

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148227580|ref|NP_001091214.1| uncharacterized protein LOC100036987 [Xenopus laevis] gi|120538062|gb|AAI29786.1| LOC100036987 protein [Xenopus laevis]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 58/91 (63%)

Query: 19  LQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPH 78
           LQ+++VR A   + + LPG  P T EER  AAKKYN+  E+YE  PDDG   GDYP LP 
Sbjct: 32  LQRSAVRAASGVSKNDLPGPYPNTPEERAAAAKKYNMRVEDYEPYPDDGMGFGDYPKLPE 91

Query: 79  THYDSRDPFYPWDYPMFRTNYGEPLPNDFAI 109
                RDP+Y WD+P  R N+GEP+  DF +
Sbjct: 92  KSQQERDPWYSWDHPDLRRNWGEPIQWDFDM 122

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242014087|ref|XP_002427729.1| NADH-Ubiquinone oxidoreductase ASHI subunit [Pediculus humanus corporis] gi|212512170|gb|EEB14991.1| NADH-Ubiquinone oxidoreductase ASHI subunit [Pediculus humanus corporis]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 64/98 (65%), Gaps = 2/98 (2%)

Query: 13  LGKVLSLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGD 72
           L  + +L  ++V+    Y PD+ PG  PKTE ER  AA+KYNLLPEEY+  PDDG A GD
Sbjct: 15  LDSLRTLSVSNVKQCHWY-PDFKPGPYPKTEAERNAAARKYNLLPEEYQPMPDDGDALGD 73

Query: 73  YPHLPH-THYDSRDPFYPWDYPMFRTNYGEPLPNDFAI 109
           YP L H   Y+ RDP++ WD+P  R ++ EP+P +  I
Sbjct: 74  YPDLSHYKRYEDRDPYHHWDFPDMRRDFLEPVPMEAVI 111

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|133737016|gb|AAI33784.1| LOC100049132 protein [Xenopus laevis]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 76/140 (54%), Gaps = 7/140 (5%)

Query: 19  LQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPH 78
           +Q+++VR A   + + LPG  PKT EER  AAKKYN+  E+YE  PDDG   GDYP LP 
Sbjct: 23  VQRSAVRAASGVSKNDLPGPYPKTPEERATAAKKYNMRVEDYEPYPDDGMGFGDYPKLPE 82

Query: 79  THYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLA-YMVGI 137
                RDP+Y WD+P  R N+GEP+  DF +       N    +     W  +  Y+ G 
Sbjct: 83  KSQQERDPWYTWDHPDLRRNWGEPIQWDFDMYTR----NRVDTSPTALPWNTMCKYLFGF 138

Query: 138 LGTISLVLKYFCWEKRYYYP 157
           +G   ++  ++  EK   YP
Sbjct: 139 IGF--MLFMFWVGEKYPVYP 156

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|89267845|emb|CAJ82855.1| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa [Xenopus (Silurana) tropicalis]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 66/114 (57%), Gaps = 8/114 (7%)

Query: 4   LRVLSQVKSLGK--------VLSLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNL 55
           +R L++  +LG            +Q+++VR A     + LPG  PKT EE+  AAKKYN+
Sbjct: 7   VRSLTRRAALGAYSVSGDHGASLVQRSAVRAASGAAKNDLPGPYPKTPEEKAAAAKKYNM 66

Query: 56  LPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAI 109
             E+YE  PDDG   GDYP LP      RDP+Y WD+P  R N+GEP+  DF +
Sbjct: 67  RVEDYEPYPDDGMGFGDYPRLPEKSQQERDPWYSWDHPDLRRNWGEPMQWDFDM 120

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|134024124|gb|AAI35778.1| LOC733466 protein [Xenopus (Silurana) tropicalis]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 66/114 (57%), Gaps = 8/114 (7%)

Query: 4   LRVLSQVKSLGK--------VLSLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNL 55
           +R L++  +LG            +Q+++VR A     + LPG  PKT EE+  AAKKYN+
Sbjct: 8   VRSLTRRAALGAYSVSGDHGASLVQRSAVRAASGAAKNDLPGPYPKTPEEKAAAAKKYNM 67

Query: 56  LPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAI 109
             E+YE  PDDG   GDYP LP      RDP+Y WD+P  R N+GEP+  DF +
Sbjct: 68  RVEDYEPYPDDGMGFGDYPRLPEKSQQERDPWYSWDHPDLRRNWGEPMQWDFDM 121

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157822261|ref|NP_001099830.1| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [Rattus norvegicus] gi|149040249|gb|EDL94287.1| NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 (predicted), isoform CRA_a [Rattus norvegicus] gi|187469223|gb|AAI66889.1| NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 [Rattus norvegicus] gi|187469243|gb|AAI66905.1| NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 [Rattus norvegicus] gi|187469737|gb|AAI66906.1| NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 [Rattus norvegicus]

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 8/103 (7%)

Query: 8   SQVKSLGKVLSLQQNS-------VRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEY 60
           S+  +LG V  LQ+ S        R AF  T D +PG  P+T EER  AAKKYN+  E+Y
Sbjct: 4   SRAAALG-VRWLQRTSRCVVPLEARRAFHMTKDMMPGSYPRTPEERAAAAKKYNMRVEDY 62

Query: 61  EVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPL 103
           E  PDDG   GDYP LP+     RDP+Y WD+P  R N+GEP+
Sbjct: 63  EPYPDDGMGYGDYPMLPNRSQHERDPWYEWDHPDLRLNWGEPI 105

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

>gi|225716906|gb|ACO14299.1| NADH dehydrogenase 1 beta subcomplex subunit 8, mitochondrial precursor [Esox lucius]

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 62/108 (57%), Gaps = 2/108 (1%)

Query: 2   NKLRVLSQVKSLGKVLSLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYE 61
           N  R LS+ K  G   S   + VR A   +   LPG  PKT EER  AAKKYN+  +EYE
Sbjct: 8   NWARALSKGK--GPAFSALLSQVRAASGPSKAMLPGPYPKTPEERAAAAKKYNMTVDEYE 65

Query: 62  VQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAI 109
             PD+G   GDYP LP      RDP+Y WD+P  R N+GEP+  DF +
Sbjct: 66  PMPDNGEGYGDYPKLPDRSQHERDPWYSWDHPDLRRNWGEPIHWDFDM 113

Source: Esox lucius

Species: Esox lucius

Genus: Esox

Family: Esocidae

Order: Esociformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
ZFIN|ZDB-GENE-040426-1858	188	ndufb8 "NADH dehydrogenase (ub	0.579	0.542	0.365	1.1e-14
UNIPROTKB|F1N858	192	NDUFB8 "Uncharacterized protei	0.471	0.432	0.433	1.8e-14
UNIPROTKB|Q5ZJW2	191	NDUFB8 "Uncharacterized protei	0.471	0.434	0.433	1.8e-14
RGD|1309129	186	Ndufb8 "NADH dehydrogenase (ub	0.448	0.424	0.430	1.8e-14
UNIPROTKB|Q02372	186	NDUFB8 "NADH dehydrogenase [ub	0.772	0.731	0.335	3.8e-14
UNIPROTKB|E9PQ68	159	E9PQ68 "Uncharacterized protei	0.744	0.823	0.314	3.8e-14
FB|FBgn0029888	175	CG3192 [Drosophila melanogaste	0.863	0.868	0.288	6.2e-14
UNIPROTKB|O95169	186	NDUFB8 "NADH dehydrogenase [ub	0.778	0.736	0.311	6.2e-14
MGI|MGI:1914514	186	Ndufb8 "NADH dehydrogenase (ub	0.448	0.424	0.430	6.2e-14
UNIPROTKB|F1RWL7	186	NDUFB8 "Uncharacterized protei	0.448	0.424	0.430	7.9e-14

ZFIN|ZDB-GENE-040426-1858 ndufb8 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8" [Danio rerio (taxid:7955)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/104 (36%), Positives = 52/104 (50%)

Query:     6 VLSQVKSLGKVLSLQQ--NSVRTAFVYTPDWLPGXXXXXXXXXXXXXXXYNLLPEEYEVQ 63
             +L+   + GK  S+       R A   + D LPG               YN+ PE+Y+  
Sbjct:     8 LLTPALTKGKSSSISAIIRGARAASGSSKDSLPGPYPKTAEEKAAAAKKYNMRPEDYQPY 67

Query:    64 PDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDF 107
             PDDG+ +GDYP LP      RDP+Y WD+P  R N+GEP+   F
Sbjct:    68 PDDGWGSGDYPMLPSRSQHERDPYYQWDHPDLRRNWGEPMHYHF 111

GO:0005739 "mitochondrion" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0003954 "NADH dehydrogenase activity" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

UNIPROTKB|F1N858 NDUFB8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 36/83 (43%), Positives = 43/83 (51%)

Query:    25 RTAFVYTPDWLPGXXXXXXXXXXXXXXXYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSR 84
             R A   T D LPG               YN+  E+Y+  PDDGF  GDYP LP+     R
Sbjct:    33 RAASGLTKDQLPGPYPRTAEERAAAAKKYNMRVEDYQPYPDDGFGYGDYPMLPNKSIHER 92

Query:    85 DPFYPWDYPMFRTNYGEPLPNDF 107
             DP+Y WD P  R N+GEP+  DF
Sbjct:    93 DPWYQWDQPDMRRNWGEPMHWDF 115

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|Q5ZJW2 NDUFB8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 36/83 (43%), Positives = 43/83 (51%)

Query:    25 RTAFVYTPDWLPGXXXXXXXXXXXXXXXYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSR 84
             R A   T D LPG               YN+  E+Y+  PDDGF  GDYP LP+     R
Sbjct:    32 RAASGLTKDQLPGPYPRTAEERAAAAKKYNMRVEDYQPYPDDGFGYGDYPMLPNKSIHER 91

Query:    85 DPFYPWDYPMFRTNYGEPLPNDF 107
             DP+Y WD P  R N+GEP+  DF
Sbjct:    92 DPWYQWDQPDMRRNWGEPMHWDF 114

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

RGD|1309129 Ndufb8 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8" [Rattus norvegicus (taxid:10116)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 34/79 (43%), Positives = 42/79 (53%)

Query:    25 RTAFVYTPDWLPGXXXXXXXXXXXXXXXYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSR 84
             R AF  T D +PG               YN+  E+YE  PDDG   GDYP LP+     R
Sbjct:    27 RRAFHMTKDMMPGSYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPMLPNRSQHER 86

Query:    85 DPFYPWDYPMFRTNYGEPL 103
             DP+Y WD+P  R N+GEP+
Sbjct:    87 DPWYEWDHPDLRLNWGEPI 105

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q02372 NDUFB8 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 51/152 (33%), Positives = 66/152 (43%)

Query:    25 RTAFVYTPDWLPGXXXXXXXXXXXXXXXYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSR 84
             RTA   T D LPG               YN+  E+YE  PDDG   GDYP LP      R
Sbjct:    27 RTASHITKDMLPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGTGYGDYPKLPDRSQQER 86

Query:    85 DPFYPWDYPMFRTNYGEPLPNDFAIS-HYGMGFNEQPVNQRISVWEQLAYMVGILGTISL 143
             DP+Y WD+P  R N+GEP+  D  +     +  +  PVN     W  +     + G ++ 
Sbjct:    87 DPWYDWDHPDLRLNWGEPMHWDLDMYIRNRVDTSPTPVN-----WNLMCKH--LFGFVAF 139

Query:   144 VLKYFCWEKRYYYPKFDSPKYQK-GVVHYGYH 174
             +L  F W    Y      P YQ  G   Y Y+
Sbjct:   140 MLFMF-WVGETY------PAYQPVGPKQYPYN 164

GO:0016021 "integral to membrane" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

UNIPROTKB|E9PQ68 E9PQ68 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 44/140 (31%), Positives = 59/140 (42%)

Query:    25 RTAFVYTPDWLPGXXXXXXXXXXXXXXXYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSR 84
             RTA   T D  PG               YN+  E+YE  PDDG   GDYP LP      R
Sbjct:    27 RTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHER 86

Query:    85 DPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLV 144
             DP+Y WD P  R N+GEP+   + +  Y    N    +     W  +     + G ++ +
Sbjct:    87 DPWYSWDQPGLRLNWGEPM--HWHLDMYNR--NRVDTSPTPVSWHVMCMQ--LFGFLAFM 140

Query:   145 LKYFCWEKRYY--YPKFDSP 162
             + + CW    Y  Y   D P
Sbjct:   141 I-FMCWVGDVYPVYQPVDRP 159

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

FB|FBgn0029888 CG3192 [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 45/156 (28%), Positives = 69/156 (44%)

Query:    21 QNSVRTAFVYTPDWLPGXXXXXXXXXXXXXXXYNLLPEEYEVQPDDGFATGDYPHLPH-T 79
             + ++R+   +  D+ PG               Y LLPEEY+   DDG   GDYP L +  
Sbjct:    23 RQAIRSMAGWNKDYKPGPYPQTEKERLAAAKKYYLLPEEYKPYADDGLGYGDYPKLGYGL 82

Query:    80 HYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILG 139
               +++D +YPWDYP  + N  EP+  D  +         +P   R S     A  +G++ 
Sbjct:    83 GVEAKDSYYPWDYPEHKRNQHEPISADHDLYSEDRWSQAEP--PRYSNAYYFACFLGVMS 140

Query:   140 TISLVLKYFCWEKRYYYPKFDSPKYQKGVVHYGYHQ 175
                L L Y+  +K+ Y P         GV HY + +
Sbjct:   141 GC-LALYYWLDDKKMYRPVAAKQYPSPGVKHYTFEK 175

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

UNIPROTKB|O95169 NDUFB8 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 47/151 (31%), Positives = 63/151 (41%)

Query:    25 RTAFVYTPDWLPGXXXXXXXXXXXXXXXYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSR 84
             RTA   T D  PG               YN+  E+YE  PDDG   GDYP LP      R
Sbjct:    27 RTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHER 86

Query:    85 DPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLV 144
             DP+Y WD P  R N+GEP+   + +  Y    N    +     W  +     + G ++ +
Sbjct:    87 DPWYSWDQPGLRLNWGEPM--HWHLDMYNR--NRVDTSPTPVSWHVMCMQ--LFGFLAFM 140

Query:   145 LKYFCWEKRYYYPKFDSPKYQK-GVVHYGYH 174
             + + CW    Y      P YQ  G   Y Y+
Sbjct:   141 I-FMCWVGDVY------PVYQPVGPKQYPYN 164

GO:0016021 "integral to membrane" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;NAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:1914514 Ndufb8 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8" [Mus musculus (taxid:10090)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 34/79 (43%), Positives = 41/79 (51%)

Query:    25 RTAFVYTPDWLPGXXXXXXXXXXXXXXXYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSR 84
             R AF  T D LPG               YN+  E+YE  PDDG   GDYP LP+     R
Sbjct:    27 RRAFHMTKDMLPGSYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPMLPNRSQHER 86

Query:    85 DPFYPWDYPMFRTNYGEPL 103
             DP+Y WD+   R N+GEP+
Sbjct:    87 DPWYQWDHSELRMNWGEPI 105

GO:0003674 "molecular_function" evidence=ND

GO:0003954 "NADH dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

UNIPROTKB|F1RWL7 NDUFB8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/79 (43%), Positives = 40/79 (50%)

Query:    25 RTAFVYTPDWLPGXXXXXXXXXXXXXXXYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSR 84
             RTA   T D  PG               YN+  E+YE  PDDG   GDYP LP      R
Sbjct:    27 RTASHVTKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQQER 86

Query:    85 DPFYPWDYPMFRTNYGEPL 103
             DP+Y WD+P  R N+GEP+
Sbjct:    87 DPWYDWDHPDLRLNWGEPI 105

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O95169	NDUB8_HUMAN	No assigned EC number	0.5308	0.4602	0.4354	yes	N/A
Q0MQE7	NDUB8_PANTR	No assigned EC number	0.3798	0.6818	0.6451	yes	N/A
Q02372	NDUB8_BOVIN	No assigned EC number	0.5555	0.4602	0.4354	yes	N/A
Q9D6J5	NDUB8_MOUSE	No assigned EC number	0.5057	0.4943	0.4677	yes	N/A
P0CB85	NDUB8_PONAB	No assigned EC number	0.3805	0.7102	0.6720	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	176
pfam05821	179	pfam05821, NDUF_B8, NADH-ubiquinone oxidoreductase	1e-29

>gnl|CDD|218766 pfam05821, NDUF_B8, NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)

 Score =  106 bits (267), Expect = 1e-29
 Identities = 47/90 (52%), Positives = 58/90 (64%)

Query: 18  SLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLP 77
           ++     R A  +  D+ PG  PKTEEER  AAKKYNL PE+Y+  PDDG   GDYP LP
Sbjct: 15  AVAPRGARAASGWNKDYKPGPYPKTEEERAAAAKKYNLRPEDYQPYPDDGLGYGDYPKLP 74

Query: 78  HTHYDSRDPFYPWDYPMFRTNYGEPLPNDF 107
               + RDP+YPWD+P  R N+GEP+  DF
Sbjct: 75  DRSVEERDPYYPWDHPELRRNWGEPIHADF 104

This family consists of several eukaryotic NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI) proteins. NADH:ubiquinone oxidoreductase (complex I) is an extremely complicated multiprotein complex located in the inner mitochondrial membrane. Its main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. Human complex I appears to consist of 41 subunits. Length = 179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PF05821	179	NDUF_B8: NADH-ubiquinone oxidoreductase ASHI subun	100.0
KOG4040|consensus	186		100.0

>PF05821 NDUF_B8: NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8); InterPro: IPR008699 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=100.00  E-value=2.9e-70  Score=448.30  Aligned_cols=155  Identities=35%  Similarity=0.548  Sum_probs=147.2

Q ss_pred             HHHHhhhhhhhcccCCCCCCCCCCCCCHHHHHHHHHHcCCCCCCcccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcCC
Q psy414           16 VLSLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMF   95 (176)
Q Consensus        16 ~~~~~~~~~r~~~~~~~d~~PgpyP~t~eer~aaAkKY~l~~edY~P~~ddg~~~GDYP~lP~~s~q~RDPy~~WDdpq~   95 (176)
                      ...++.++||+||+|||||+|||||||+|||+||||||||+||||+||+|||+++||||+||.+|+|+||||++|||||+
T Consensus        13 ~~~~~~~~~r~~~~~~kd~~PgpyP~t~eer~aaAkKY~l~pedY~P~pDDg~~~GDYP~lp~~s~q~RDPy~~WDdpq~   92 (179)
T PF05821_consen   13 NPAVLPLGARTASGWNKDWKPGPYPKTPEERAAAAKKYGLRPEDYEPYPDDGMGYGDYPKLPDISQQERDPYYDWDDPQE   92 (179)
T ss_pred             hhhhhhhhhhhhccCCccCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCcccCCCCCCCccchhhcCCCCCcCChhh
Confidence            44456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCccCccccCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCccccccc
Q psy414           96 RTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSPKYQKGVVHYGYH  174 (176)
Q Consensus        96 RRNfgEPvH~d~d~Dm~s~dr~d~~~~~~vs~~~~l~~~~g~l~g~~~~~~~l~~~y~~~~Pv~prqYP~~GL~Hytfe  174 (176)
                      |||||||||+  |+|||++||+|++ ++.++|.+++.+|++|+ ||+++++||++++++++||+|||||+|||.|+++.
T Consensus        93 RRNfgEPvH~--d~Dm~s~dr~d~~-~~~~~w~~~~~~l~~fl-g~~~~~~~~~~~~~~~~P~~pKqYP~~gL~~e~gg  167 (179)
T PF05821_consen   93 RRNFGEPVHE--DFDMYSPDRYDTS-PTPVSWQSMLKQLFGFL-GFMLFMFYLGEMYPPYRPVMPKQYPYNGLYLELGG  167 (179)
T ss_pred             hcCCCCCCcc--cccceeecccccC-CCcccHHHHHHHHHHHH-HHHHHHHHHhhhccCCCCCCcccCCCCCeecccCC
Confidence            9999999999  9999999999987 56778999999999999 99999999998999999999999999999998875

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several eukaryotic NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI) proteins. NADH:ubiquinone oxidoreductase (complex I) is an extremely complicated multiprotein complex located in the inner mitochondrial membrane. Its main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. Human complex I appears to consist of 41 subunits [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion

>KOG4040|consensus

Probab=100.00  E-value=4e-62  Score=393.78  Aligned_cols=152  Identities=34%  Similarity=0.535  Sum_probs=142.8

Q ss_pred             hhhhhhcccCCCCCCCCCCCCCHHHHHHHHHHcCCCCCCcccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCCCCC
Q psy414           21 QNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYG  100 (176)
Q Consensus        21 ~~~~r~~~~~~~d~~PgpyP~t~eer~aaAkKY~l~~edY~P~~ddg~~~GDYP~lP~~s~q~RDPy~~WDdpq~RRNfg  100 (176)
                      ..+.|++++|+||++|||||+|||||+||||||||+|||||||+|||+++||||+|+.+++++||||+.||+||+|||||
T Consensus        23 ~~g~rt~~gw~kD~kPgpyP~teeER~AAAkKY~lrpEdY~py~dDg~gyGDYPkLg~~~~~~kDpyy~Wd~p~~rrNwg  102 (186)
T KOG4040|consen   23 PRGPRTFDGWYKDHKPGPYPTTEEERRAAAKKYGLRPEDYQPYDDDGVGYGDYPKLGVITYDHKDPYYAWDDPQNRRNWG  102 (186)
T ss_pred             ccccccccccccccCCCCCCCCHHHHHHHHHHhCCCHhhcCcCCcCCcccCCCCcCcccccccCCCccccCChhhhcccC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccCccccCCCCCCC-ccccCHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccc
Q psy414          101 EPLPNDFAISHYGMGFNEQPV-NQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSPKYQKGVVHYGYHQ  175 (176)
Q Consensus       101 EPvH~d~d~Dm~s~dr~d~~~-~~~vs~~~~l~~~~g~l~g~~~~~~~l~~~y~~~~Pv~prqYP~~GL~Hytfe~  175 (176)
                      ||||+  |+|+|+.||++..+ ++.++|..+|.+|+|+| .++++++|+...++.++||+|||||++|+.||+|+.
T Consensus       103 Epv~~--d~d~Y~~dR~t~~e~p~y~~w~~~~mcl~g~~-~~~l~~~y~~d~~p~ykPv~pKQYpy~~~~~y~f~d  175 (186)
T KOG4040|consen  103 EPVPI--DMDRYRGDRFTGLEAPDYTTWNSIVMCLRGLV-PMALLAWYFTDEHPRYKPVMPKQYPYDFYRAYPFDD  175 (186)
T ss_pred             CCcch--hHhhhccccccccCCCCcccHHHHHHHHHHHH-HHHHHHHHHcccccccccCCcccCCCCCeeeccCCC
Confidence            99999  99999999988643 66789999999999999 666667788889999999999999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 44/187 (23%)

Query: 1   MNKLRVLSQVKSLGKVLSLQQNSVRTAFVYTPDWLPGERPKTEEER---RKAAKKYNLLP 57
           +NKL       SL     +++    +     P      + K E E    R     YN+ P
Sbjct: 408 VNKL----HKYSL-----VEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNI-P 456

Query: 58  EEYE-----VQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHY 112
           + ++         D +    Y H+ H H  + +        +FR  +   L  DF     
Sbjct: 457 KTFDSDDLIPPYLDQYF---YSHIGH-HLKNIEHPERMT--LFRMVF---L--DF----- 500

Query: 113 GMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYY------YPKFDSPKYQK 166
              F EQ +    + W     ++  L  +     Y C     Y         F  PK ++
Sbjct: 501 --RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF-LPKIEE 557

Query: 167 GVVHYGY 173
            ++   Y
Sbjct: 558 NLICSKY 564

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00