Psyllid ID: psy4200

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGIMYVR
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEcccccccEEEEEEEEcccccEEEEEEEccccEEEEccccEEEEcccccccccccccEEEEEEEEEEcccccEEEEEEEccccEEEEccccEEEEccccccccccEEEEEEEEcccccEEEEEEEEEEEEEcccccccccccEEEEEEccccccccEEEEEEccccccccccEEEEEccccccccEEEEccccEEEEccccccccccccccEEEEEEEEEEccccccccccccEEEEEEEEEEEEccccccEEEEEEEEEEcccccccccEEEEEEEEEccccEEEEEEEccccccEEEEEEEEEEEEcccccccccccEEEEEEEcccccccEEEEEEEEcccccccccEEEEEEEEcccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEcccccccccEEEEEEEEcccccEEEEEEcccccEEEcccccEEEEccccccccccccccEEEEEEEcccccccEEEEEEcccccEEEcccccEEEEEccccHHHcccEEEEEEEccccccccEEEEEEEEEEccccccccccccEEEEEccccccccEEEEEEEEccccccccEEEEEEEcccccEEEEEccccEEEEEccccHHHHHHccccEEEEEEEEEcccccccccccccEEEEEEEEEEEcccccccEEccEEEEEEccccccccEEEEEEEEcccccEEEEEEccccccccEEEEEEEEEEEccccccEEEcccEEEEccccccccEEEEEEEEEccccccccccEEEEEEEcccccEEEc
Coil and Loop (DISEMBL)
meaygnsppsfttdvnsplvveentppgtivstlegvdpegskvkygiygtdrfsldrdsgelrvaqpldreynstnTSTIVLTLegvdpegskvkygiygtdwfsldrdsgelrvaqplyredghhtsktnvdirdghhtsktnvdirvgdvqntppifinssfsgeimesapiGSVVLRveakdgdlaqprsiyydlltnpdefflidsntgelktakpldreilggtngVISLTVRAremvdgkplqedqaTAFAQVTVTIldvndsppvfnrkeyvvhipedipdgsllpdldmivtdsdLVIAEETHTAEKLSSSATLIVQVTdvndnvpsfelnaytgnvletaqagtsittitaldsdggdygtgGIVYELLGEYGIMYVR
Flexible Loop (DISEMBL)
meaygnsppsfttdvnsPLVVEENTPPGtivstlegvdpegskVKYGIYgtdrfsldrdsGELRvaqpldreynstntstivltlegvdpegskVKYGIYGTdwfsldrdsGELRVAQplyredghhtsktnvdirdghhtsktnvdirvgdvqntpPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKtakpldreilggtnGVISLTVRAREMVDGKPLQEDQATAFAQVTVTildvndsppvfNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHtaeklsssatlIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTitaldsdggdyGTGGIVYELLGEYGIMYVR
Low Complexity Region (SEG)
MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGIMYVR
Disordered region (IsUnstruct)
******************************************KVKYGIYGTDRFSL*******************TNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLY***********************NVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGIMYV*
Disordered Region (DISOPRED)
MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE******R
Disordered Region (DISEMBL)
***********TTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGIMYVR
Disordered Region (DISPRO)
*E**GNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGIMYVR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGIMYVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	388	2.2.26 [Sep-21-2011]
Q9VGG5	1975	Cadherin-87A OS=Drosophil	yes	N/A	0.634	0.124	0.436	4e-56
Q6B457	867	Cadherin-related family m	N/A	N/A	0.894	0.400	0.272	1e-29
Q8UVJ7	865	Cadherin-related family m	yes	N/A	0.914	0.410	0.272	1e-29
Q8BNA6	4555	Protocadherin Fat 3 OS=Mu	yes	N/A	0.894	0.076	0.259	9e-27
Q9VW71	4705	Fat-like cadherin-related	no	N/A	0.899	0.074	0.271	1e-24
Q96JP9	859	Cadherin-related family m	no	N/A	0.706	0.318	0.277	9e-24
Q8VHP6	859	Cadherin-related family m	no	N/A	0.811	0.366	0.262	1e-23
Q6B3P0	857	Cadherin-related family m	no	N/A	0.961	0.435	0.249	1e-23
Q8TDW7	4589	Protocadherin Fat 3 OS=Ho	no	N/A	0.860	0.072	0.270	1e-23
Q91XU7	859	Cadherin-related family m	no	N/A	0.814	0.367	0.258	1e-22

>sp|Q9VGG5|CAD87_DROME Cadherin-87A OS=Drosophila melanogaster GN=Cad87A PE=1 SV=4

 Score =  219 bits (557), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 131/300 (43%), Positives = 169/300 (56%), Gaps = 54/300 (18%)

Query: 133 VDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQP 192
           ++  DG H ++T  + RV DVQ+ PP+F   S S  I E +PI ++VL V A+DGD  +P
Sbjct: 218 IEATDGPHKTQTTFEARVKDVQDKPPVF-QGSLSTVIDEDSPINTLVLTVHARDGDTGEP 276

Query: 193 RSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQED 252
           R I YDL TNP+++FL+D+ TGEL+TAKPLDRE L  + G+ISL +RARE+V+G P  + 
Sbjct: 277 RKIVYDLRTNPNDYFLLDAQTGELRTAKPLDREALEDSTGIISLVIRARELVNGVPSDDP 336

Query: 253 QATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD-------- 304
             +A A+ TVTI DVNDSPPVFN KEY V + E+   G+ L  LDM V+D+D        
Sbjct: 337 LTSATAKATVTIRDVNDSPPVFNHKEYSVSLLENTLPGTPLA-LDMSVSDADVGINSKFA 395

Query: 305 --------------------------------------------LVIAEETHTAEKLSSS 320
                                                       LV+AEET T  +LSS+
Sbjct: 396 LRLDDVSGVFDVEPKLVTGYSQVNIRVANGTLDYENPNQRKFIVLVVAEETDTNPRLSST 455

Query: 321 ATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLG 380
           AT+ V V D NDN P FE  +Y+ +V E A  G  I TITA D D G YG  GI Y L G
Sbjct: 456 ATITVSVLDANDNKPVFEQESYSASVSEAALPGQYIATITARDVDSGSYGDSGIRYSLSG 515

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells.
Drosophila melanogaster (taxid: 7227)

>sp|Q6B457|CDHR1_XENLA Cadherin-related family member 1 OS=Xenopus laevis GN=cdhr1 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 203/488 (41%), Gaps = 141/488 (28%)

Query: 19  LVVEENTPPGTIVSTLEGVDPEGSKVKYGIY---GTDR-FSLDRDSGELRVAQPLDREYN 74
           L + E+TP G  +  L G DP+G  V +G+    G+ R F++D D+G + + + LDRE  
Sbjct: 45  LSLSEDTPVGAYIYALNGSDPDGDPVTFGLTFEPGSKRYFAVDPDNGNVTLIEELDREKQ 104

Query: 75  S---------------------------------TNTSTIV------------LTLEGVD 89
                                              NT  IV              +E VD
Sbjct: 105 DEIEVIVSISDGINKVSEKVRVLVTDANDESPGFLNTPYIVTVPEDTPPGSSIFKIEAVD 164

Query: 90  PE---GSKVKYGI---YGTDWFSLDRDSGELRVAQPLYRE-DGHHTSKTNVDIRDGH--- 139
            +   G  + Y I   +G+  F++DR SG LR+   +  + +   T   +V  +DG    
Sbjct: 165 KDTGSGGSITYIIQEMHGSK-FTIDRHSGVLRIKAGVSLDFEKSRTHFVSVLAKDGGGKL 223

Query: 140 ------HTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPR 193
                  TS T V I V DVQ++PP+F+ + + G + E   +GS VL V+A DGD   P 
Sbjct: 224 RGKNQVFTSTTTVTINVEDVQDSPPVFVGTPYYGYVYEDTTMGSEVLTVKAYDGDRGNPN 283

Query: 194 SIYYDLLTNPDEFFLIDSNTGE---LKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQ 250
           +IYY ++   D  F I++ TG    +KT   L +E       V  L ++  E+    P  
Sbjct: 284 TIYYSIVNGSDGAFTINNATGGITVIKTPDELKKE-------VYELKIQVSEIT---PEG 333

Query: 251 EDQATAFAQVTVTILDVNDSPPVF-------NRKEYVVHIPEDIPDGSLLPDLDMIVTDS 303
           +  A AF   TV ++D+N+ PP F       NR E  ++  E  P+G +L  L + V DS
Sbjct: 334 DKVAHAFTVATVRVVDLNNHPPTFYGENGPQNRFELTMY--EHPPEGEILRGLKITVNDS 391

Query: 304 DL---------------------------------------------------VIAEETH 312
           D                                                    ++A E +
Sbjct: 392 DQGANAKFNLRLVGPGGIFRVVPQTVLNEAQVTIIVENSAGIDYEKFHLFTFKLLAIEVN 451

Query: 313 TAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTG 372
           T EK SS+A + + + D+NDNVP F    Y   + E +  G+++   TA D D G +G  
Sbjct: 452 TPEKFSSTADITIHLLDINDNVPRFSSEYYIARIPENSPGGSNVVAATATDLDSGLWGE- 510

Query: 373 GIVYELLG 380
            I Y + G
Sbjct: 511 -IKYSIYG 517

Potential calcium-dependent cell-adhesion protein.

Xenopus laevis (taxid: 8355)

>sp|Q8UVJ7|CDHR1_CHICK Cadherin-related family member 1 OS=Gallus gallus GN=CDHR1 PE=2 SV=1

 Score =  130 bits (328), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 215/506 (42%), Gaps = 151/506 (29%)

Query: 19  LVVEENTPPGTIVSTLEGVDPEGSKVKYGI---YGTDR-FSLDRDSGELRVAQPLDREY- 73
           L + E+TP G+ V TL G DPEG  V YG+    G+ R FS+D + G + + + LDRE  
Sbjct: 44  LSLSEDTPVGSHVYTLNGTDPEGDPVTYGLTYEAGSRRYFSVDGNLGNVTLIEELDREKE 103

Query: 74  ---------------------------------------------NSTNTSTIVLTLEGV 88
                                                        NS + S+I   +E V
Sbjct: 104 DEIEVIVSISDGLSTVSEKVRILVMDANDESPEFINTPYIVQVPENSPSGSSI-FKIEAV 162

Query: 89  DPE---GSKVKYGIYG--TDWFSLDRDSGELRVAQPLYREDGHHTSKTN---VDIRDGH- 139
           D +   G  + Y +     + F++DR SG LR+   +  +  +  S+T+   V  +DG  
Sbjct: 163 DRDTGSGGSITYFLQNIHANKFTIDRHSGVLRIKSGVTLD--YEKSRTHFVVVVAKDGGG 220

Query: 140 --------HTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQ 191
                    ++ T V + V DVQ+TPP+FI + + G + E    GS VL V A DGD  +
Sbjct: 221 KLRGDNKVFSATTTVTVNVEDVQDTPPMFIGTPYYGYVYEDTLPGSEVLTVVALDGDRGK 280

Query: 192 PRSIYYDLLTNPDEFFLIDSNTGE---LKTAKPLDREILGGTNGVISLTVRAREMVDGKP 248
           P +I+Y ++   +  F I + TG    +K+   L +E       V  L V+A E+    P
Sbjct: 281 PNNIHYCIVNGSEGSFEISNTTGAISVIKSPNQLKKE-------VYELRVQASEV---SP 330

Query: 249 LQEDQATAFAQVTVTILDVNDSPPVF-------NRKEYVVHIPEDIPDGSLLPDLDMIVT 301
             +  A AFA VT+ ++D+N+ PP F       NR E  ++  E  P+G +L  L + V 
Sbjct: 331 EGDVSAYAFATVTIRVVDLNNHPPTFYGESGPQNRFELTMY--EHPPEGEILRGLKITVN 388

Query: 302 DSDL---------------------------------------------------VIAEE 310
           DSD                                                    ++A E
Sbjct: 389 DSDQGANAKFNLRLVGPGGIFRVVPLTVLNEAQVTIIVENSAAIDYEKFKVLTFKLLAIE 448

Query: 311 THTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGG--- 367
            +T EK SS+A + +++ D NDNVP F  + Y   + E +  G+++  +TA D D G   
Sbjct: 449 VNTPEKFSSTADIAIRLLDTNDNVPKFSSDYYIARIPENSPGGSNVVAVTATDPDSGLWG 508

Query: 368 -----DYGTGGIVYELLGEYGIMYVR 388
                 YGTG  ++ +    GI+Y +
Sbjct: 509 EVKYSIYGTGADLFLIHPSTGIIYTQ 534

Potential calcium-dependent cell-adhesion protein.

Gallus gallus (taxid: 9031)

>sp|Q8BNA6|FAT3_MOUSE Protocadherin Fat 3 OS=Mus musculus GN=Fat3 PE=1 SV=2

 Score =  121 bits (303), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 203/463 (43%), Gaps = 116/463 (25%)

Query: 21   VEENTPPGTIVSTLEGVDPEGS----KVKYGIYGTD---RFSLDRDSGELRV--AQPLDR 71
            V+E+ PPG +V+ L  +D + S    +V Y I G +   +F+L     E +V   +PLDR
Sbjct: 2932 VKESDPPGEVVAVLSTLDKDTSNINRQVSYHITGGNPRGQFALGMVQSEWKVYVKRPLDR 2991

Query: 72   E----------------------------------------YNST-----NTSTIVLTLE 86
            E                                        Y+++      ++ I+L + 
Sbjct: 2992 EEQDIYFLNITASDGLFVTQAMVEVTVSDVNDNSPVCDQVAYSASLPEDIPSNKIILKVS 3051

Query: 87   GVDPE-GSK--VKYGIYGT--DWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHT 141
              D + GS   ++Y +YG+  + F LD +SGEL+    L RE     +        G   
Sbjct: 3052 AKDADIGSNGDIRYSLYGSGNNEFFLDPESGELKTLAVLDRERVPVYNLIARATDGGGRF 3111

Query: 142  SKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT 201
              ++V + + DV + PP+F ++ ++  + E+    +++ RV+A D D+   R + Y L  
Sbjct: 3112 CSSSVLLLLEDVNDNPPVFSSNHYTACVYENTATKALLTRVQAMDPDVGINRKVVYSLED 3171

Query: 202  NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVT 261
            +    F IDS++G +   +PLDRE     N    ++VRA +   G+ L     ++ A VT
Sbjct: 3172 SASGVFSIDSSSGVIVLEQPLDREQQSSYN----ISVRATDQSPGQSL-----SSLASVT 3222

Query: 262  VTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD----------------- 304
            +T+LD+ND+PPVF R++Y+V +PED   G+ +  L +  T  D                 
Sbjct: 3223 ITVLDINDNPPVFERRDYLVTVPEDTSLGTQV--LSVFATSKDIGTNAEITYLIRSGNEQ 3280

Query: 305  ---------------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSF 337
                                       LV+  +      LS++AT+ + +TDVNDN P F
Sbjct: 3281 GKFSINPKTGGISVLEALDYETCRRFYLVVEAKDGGTPALSTAATVSIDLTDVNDNPPRF 3340

Query: 338  ELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLG 380
              + Y+  + E A  G S+  + A D D      G I + ++G
Sbjct: 3341 SQDVYSAVISEDALEGDSVILLIAEDVDSKP--NGQIRFSIVG 3381

May play a role in the interactions between neurites derived from specific subsets of neurons during development.

Mus musculus (taxid: 10090)

>sp|Q9VW71|FAT2_DROME Fat-like cadherin-related tumor suppressor homolog OS=Drosophila melanogaster GN=kug PE=2 SV=2

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 200/460 (43%), Gaps = 111/460 (24%)

Query: 4    YGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP--EGSKVKYGIYGTDR---FSLDR 58
            Y ++ P F   +   L V EN  PGT++  L  +DP  E  ++ + I   D+   F + +
Sbjct: 2976 YNDNAPVFKLPIEG-LSVFENALPGTVLINLLLIDPDIEKQEMDFFIVSGDKQAQFQIGK 3034

Query: 59   DSGELRVAQPLDRE----YN-------------------------------------STN 77
             SGEL +A+PLDRE    YN                                     STN
Sbjct: 3035 -SGELFIAKPLDREQLMFYNLSIIATDGKFTAKANVEIDVKDINDNTPYCLKPRYHISTN 3093

Query: 78   TS----TIVLTLEGVDPE-GSKVKYGI--YGTDWFSLDRDSGELRVAQPLYREDGHHTSK 130
             S    T ++ ++ +D +  SK+++ +   G D FS+ ++SG L+VA  L RE      K
Sbjct: 3094 ESISIGTTLVEVKAIDFDFQSKLRFYLSGKGADDFSIGKESGILKVASALDRETTPKY-K 3152

Query: 131  TNVDIRDGHHTSK---TNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDG 187
                ++DG   ++   + + I V D+ +  PIF  + +   + E A + +++ +V A D 
Sbjct: 3153 LVAHVQDGKDFTQECFSEIIITVNDINDNMPIFSMAQYRVSVPEDAQLNTLITKVHAMDK 3212

Query: 188  DLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGK 247
            D    R I Y L+    ++F I  +TG ++  K LDRE +     + +LTV+A +   G 
Sbjct: 3213 DFGVNRQIKYSLMGENHDYFKISKSTGIIRLHKSLDRETI----SLFNLTVKAEDC--GV 3266

Query: 248  PLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPED--------------------- 286
            P    +  + A V V ILD+ND+PP F+ ++Y   I E+                     
Sbjct: 3267 P----KLHSIATVAVNILDINDNPPEFSMRQYSCKILENATHGTEVCKVYATSIDIGVNA 3322

Query: 287  -----IPDGSLLPDLDMIVTDSDLVI-AEETHTAEK---------------LSSSATLIV 325
                 I  G+      M  T  DLV+ A   +   K               LS++A + +
Sbjct: 3323 DIHYFIMSGNEQGKFKMDSTTGDLVLNATLDYEMSKFYFLTIQAIDGGTPPLSNNAYVNI 3382

Query: 326  QVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
             + D+NDN P+F  N Y  NV E    G+ I  + A D D
Sbjct: 3383 SILDINDNSPTFLQNLYRINVNEDIFVGSKILDVKATDED 3422

Required for the planar polarity of actin filament orientation at the basal side of ovarian follicle cells. Required for proper egg chamber shape; elongation of the egg chamber during oogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q96JP9|CDHR1_HUMAN Cadherin-related family member 1 OS=Homo sapiens GN=CDHR1 PE=1 SV=2

 Score =  111 bits (278), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 153/361 (42%), Gaps = 87/361 (24%)

Query: 105 FSLDRDSGELRV-AQPLYREDGHHTSKTNVDIRDG----H-----HTSKTNVDIRVGDVQ 154
           F++DR SG LR+ A      +   T    V  +DG    H      ++ T V + V DVQ
Sbjct: 181 FAVDRHSGVLRLQAGATLDYERSRTHYITVVAKDGGGRLHGADVVFSATTTVTVNVEDVQ 240

Query: 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTG 214
           +  P+F+ + + G + E    GS VL+V A DGD  +P  I Y L+   D  F I+  +G
Sbjct: 241 DMAPVFVGTPYYGYVYEDTLPGSEVLKVVAMDGDRGKPNRILYSLVNGNDGAFEINETSG 300

Query: 215 EL---KTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSP 271
            +   ++   L RE       V  L V+  EM    P     A A   VT+ I+D+N+ P
Sbjct: 301 AISITQSPAQLQRE-------VYELHVQVTEM---SPAGSPAAQATVPVTIRIVDLNNHP 350

Query: 272 PVFN-----RKEYVVHIPEDIPDGSLLPDLDMIVTDSDL--------------------- 305
           P F      +  + + + E  P G +L  L + V DSD                      
Sbjct: 351 PTFYGESGPQNRFELSMNEHPPQGEILRGLKITVNDSDQGANAKFNLQLVGPRGIFRVVP 410

Query: 306 ------------------------------VIAEETHTAEKLSSSATLIVQVTDVNDNVP 335
                                         ++A E +T EK SS+A +++Q+ D NDNVP
Sbjct: 411 QTVLNEAQVTIIVENSAAIDFEKSKVLTFKLLAVEVNTPEKFSSTADVVIQLLDTNDNVP 470

Query: 336 SFELNAYTGNVLETAQAGTSITTITALDSDGG--------DYGTGGIVYELLGEYGIMYV 387
            F+   Y   + E A  G+S+  +TA+D D G         YGTG  ++ +    G++Y 
Sbjct: 471 KFDSLYYVARIPENAPGGSSVVAVTAVDPDTGPWGEVKYSTYGTGADLFLIHPSTGLIYT 530

Query: 388 R 388
           +
Sbjct: 531 Q 531

Potential calcium-dependent cell-adhesion protein. May be required for the structural integrity of the outer segment (OS) of photoreceptor cells.

Homo sapiens (taxid: 9606)

>sp|Q8VHP6|CDHR1_MOUSE Cadherin-related family member 1 OS=Mus musculus GN=Cdhr1 PE=1 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 178/442 (40%), Gaps = 127/442 (28%)

Query: 21  VEENTPPGTIVSTLEGVDPE---GSKVKYGIYG--TDRFSLDRDSGELRVAQPLDREYNS 75
           V EN P G+ +  ++  D +   G  V Y +    + +FS+DR SG LR+      +Y  
Sbjct: 144 VPENIPAGSSIFKVQAEDKDTGSGGSVTYSLQNLHSSKFSMDRHSGVLRLQAGATLDYEK 203

Query: 76  TNTSTI-VLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVD 134
           +    I V+  +G                        G LR A  ++             
Sbjct: 204 SRAHYITVIAKDG-----------------------GGRLRGADMVF------------- 227

Query: 135 IRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRS 194
                 ++ T V I V DVQ+T PIF+ + + G + E    GS VL V A DGD  +P  
Sbjct: 228 ------SATTTVTINVEDVQDTAPIFVGTPYYGYVYEDTLPGSEVLTVVAIDGDRGKPNH 281

Query: 195 IYYDLLTNPDEFFLIDSNTGE---LKTAKPLDREILGGTNGVISLTVRAREMVD-GKPLQ 250
           I Y LL   D  F I+  +G    L++   L RE       V  L V+  E+   G P  
Sbjct: 282 ILYRLLNESDGIFEINETSGAISVLQSPALLRRE-------VYELHVQVTEVNSPGSP-- 332

Query: 251 EDQATAFAQVTVTILDVNDSPPVFN-----RKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
              A A   VT+ I+D+N+ PP F      + ++ + + E  P G +L  L + V DSD 
Sbjct: 333 --AAQATVPVTIRIVDLNNHPPTFYGESGPQNKFELSMFEHPPQGEILRGLKITVNDSDQ 390

Query: 306 ---------------------------------------------------VIAEETHTA 314
                                                              ++A E +T 
Sbjct: 391 GANAKFNLRLVGPGGIFRVVPQTVLNEAQVTIIVENSAAIDFEKSKLLTFKLLAIEVNTP 450

Query: 315 EKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGD------ 368
           EK SS+A +++Q+ D NDNVP F  + Y   + E A  G+++  +TA+D D G       
Sbjct: 451 EKFSSTADIVIQLLDTNDNVPKFTSHYYIARIPENAPGGSNVVAVTAVDPDTGPWGKVHY 510

Query: 369 --YGTGGIVYELLGEYGIMYVR 388
             YGTG  ++ +    G++Y +
Sbjct: 511 SIYGTGSDLFLIHPSTGLIYTQ 532

Potential calcium-dependent cell-adhesion protein. May be required for the structural integrity of the outer segment (OS) of photoreceptor cells.

Mus musculus (taxid: 10090)

>sp|Q6B3P0|CDHR1_DANRE Cadherin-related family member 1 OS=Danio rerio GN=cdhr1 PE=2 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 129/518 (24%), Positives = 211/518 (40%), Gaps = 145/518 (27%)

Query: 4   YGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIY----GTDRFSLDRD 59
           Y N P S   ++ + L + E+TP GT +  L G DPEG  VKYGI       + F +   
Sbjct: 32  YDNGPNSNNGNM-ALLNLSEDTPRGTQIYVLNGTDPEGQPVKYGITFEPGSKEFFRVHPK 90

Query: 60  SGELRVAQPLDREYN--------------------------------------------- 74
           SG + + + LDRE                                               
Sbjct: 91  SGVVTLIEDLDREAQDEIEVFVSISDSLNKVVEKVSVFIMDANDERPQFQNMPSIVDVPE 150

Query: 75  STNTSTIVLTLEGVDPE---GSKVKYGIYGTDW---FSLDRDSGELRV--AQPL-YREDG 125
           +T + + +  ++ VD +   G  V Y +  ++    F++D  SG LR+   + L Y +  
Sbjct: 151 NTTSGSSIYKVQAVDRDTGSGGSVTYFLQSSEQSPKFAIDHHSGVLRIKPGESLDYEKSR 210

Query: 126 HH----TSKTNVDIRDGHH---TSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSV 178
            H     +K    I  G     +S   + I V D Q++PPIFI + + G + E +  GS 
Sbjct: 211 THFITVVAKDGGGIYKGKQQVMSSSATLTINVIDTQDSPPIFIGTPYFGYVYEVSSPGSE 270

Query: 179 VLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKT---AKPLDREILGGTNGVIS 235
           +  V AKDGD+  P +I Y L +  D  F I+  +G +        L RE       V +
Sbjct: 271 IFTVSAKDGDMDNPNTIIYSLDSGADGSFSINKTSGVITLNLYPADLRRE-------VFN 323

Query: 236 LTVRAREMV-DGKPLQEDQATAFAQVTVTILDVNDSPPVFN-----RKEYVVHIPEDIPD 289
           + V+A E+  +GK L  D AT    VT+ ++D+N+ PP F      +  + + + E   +
Sbjct: 324 IKVKALEISPEGKRL--DFAT--TTVTIRVVDLNNHPPTFYGENGPQNVFELTMYEHPQE 379

Query: 290 GSLLPDLDMIVTDSDL-------------------------------------------- 305
           G  L  L + V DSD                                             
Sbjct: 380 GEFLRGLKITVNDSDQGSNAKFNLRLVGPGRMLRVVPQTVLNEAQVTVLVEDSAAMDFEK 439

Query: 306 -------VIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITT 358
                  ++A E  T E+ S++A +I+ + D NDN P F  + Y   + E +  G+++ +
Sbjct: 440 SQFLTFKLLAVEIDTPERFSATADIIIHLLDTNDNAPKFTSDFYIARIPENSPGGSNVVS 499

Query: 359 ITALDSDGG--------DYGTGGIVYELLGEYGIMYVR 388
           +TA+D D G         YG+G  ++ +  + GI+Y +
Sbjct: 500 VTAMDPDSGIWGVVKYSIYGSGADIFLIQADSGIIYTQ 537

Potential calcium-dependent cell-adhesion protein.

Danio rerio (taxid: 7955)

>sp|Q8TDW7|FAT3_HUMAN Protocadherin Fat 3 OS=Homo sapiens GN=FAT3 PE=2 SV=2

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 191/448 (42%), Gaps = 114/448 (25%)

Query: 21   VEENTPPGTIVSTLEGVDPEGS----KVKYGIYGTD---RFSLDRDSGELRV--AQPLDR 71
            V+E+ PPG +V+ L   D + S    +V Y I G +   RF+L     E +V   +PLDR
Sbjct: 2933 VKESDPPGEVVAVLSTWDRDTSDVNRQVSYHITGGNPRGRFALGLVQSEWKVYVKRPLDR 2992

Query: 72   E------YNSTNTSTIVLTLEGVD----------------------PE------------ 91
            E       N T T  + +T   V+                      PE            
Sbjct: 2993 EEQDIYFLNITATDGLFVTQAMVEVSVSDVNDNSPVCDQVAYTALLPEDIPSNKIILKVS 3052

Query: 92   ------GSK--VKYGIYGT--DWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHT 141
                  GS   ++Y +YG+    F LD +SGEL+    L RE     S        G   
Sbjct: 3053 AKDADIGSNGYIRYSLYGSGNSEFFLDPESGELKTLALLDRERIPVYSLMAKATDGGGRF 3112

Query: 142  SKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT 201
             ++N+ + + DV + PP+F +  ++  + E+    +++ RV+A D D+   R + Y L  
Sbjct: 3113 CQSNIHLILEDVNDNPPVFSSDHYNTCVYENTATKALLTRVQAVDPDIGINRKVVYSLAD 3172

Query: 202  NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVT 261
            +    F IDS++G +   +PLDRE     N    ++VRA +   G+ L     ++   VT
Sbjct: 3173 SAGGVFSIDSSSGIIILEQPLDREQQSSYN----ISVRATDQSPGQSL-----SSLTTVT 3223

Query: 262  VTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD----------------- 304
            +T+LD+ND+PPVF R++Y+V +PED   G+ +  L +  T  D                 
Sbjct: 3224 ITVLDINDNPPVFERRDYLVTVPEDTSPGTQV--LAVFATSKDIGTNAEITYLIRSGNEQ 3281

Query: 305  ---------------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSF 337
                                       LV+  +      LS+ AT+ + +TDVNDN P F
Sbjct: 3282 GKFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKF 3341

Query: 338  ELNAYTGNVLETAQAGTSITTITALDSD 365
              + Y+  + E A  G S+  + A D D
Sbjct: 3342 SQDVYSAVISEDALVGDSVILLIAEDVD 3369

May play a role in the interactions between neurites derived from specific subsets of neurons during development.

Homo sapiens (taxid: 9606)

>sp|Q91XU7|CDHR1_RAT Cadherin-related family member 1 OS=Rattus norvegicus GN=Cdhr1 PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 180/445 (40%), Gaps = 129/445 (28%)

Query: 19  LVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYG--TDRFSLDRDSGELRV--AQPLDR 71
           ++V ENTP G+ +  ++  D +   G  V Y +    + +F++DR SG LR+     LD 
Sbjct: 142 ILVPENTPAGSSIFKVQAEDKDTGSGGSVTYFLQSLHSSKFTVDRHSGVLRLQAGATLDY 201

Query: 72  EYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKT 131
           E +  +  T+V    G                        G LR A  ++          
Sbjct: 202 EKSRAHFITVVAKDGG------------------------GRLRGADVVF---------- 227

Query: 132 NVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQ 191
                    ++ T V I V DVQ+T PIF+ + + G + E    GS VL V A DGD  +
Sbjct: 228 ---------SATTTVTINVEDVQDTAPIFVGTPYYGYVYEDTLPGSEVLTVVAIDGDRGK 278

Query: 192 PRSIYYDLLTNPDEFFLIDSNTGE---LKTAKPLDREILGGTNGVISLTVRAREM-VDGK 247
           P  I Y LL   D  F I+  +G    L++   L RE       V  L V+  E+   G 
Sbjct: 279 PNHILYRLLNESDGLFEINETSGAISVLQSPAQLRRE-------VYELHVQVTEVNSSGS 331

Query: 248 PLQEDQATAFAQVTVTILDVNDSPPVFN-----RKEYVVHIPEDIPDGSLLPDLDMIVTD 302
           P     A +   V + I+D+N+ PP F      + ++ + + E  P G +L  L + V D
Sbjct: 332 P----AAQSTVPVIIRIVDLNNHPPTFYGESGPQNKFELSMFEHPPQGEILRGLKITVND 387

Query: 303 SDL---------------------------------------------------VIAEET 311
           SD                                                    ++A E 
Sbjct: 388 SDQGANAKFNLRLVGPGGIFRVVPQTVLNEAQVTIIVENSAAIDFEKSKSLTFKLLAIEV 447

Query: 312 HTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGD--- 368
           +T EK SS+A +++Q+ D NDNVP F  + Y   + E    G+++  +TA+D D G    
Sbjct: 448 NTPEKFSSTADIVIQLLDTNDNVPKFTSHYYIARIPENVPGGSNVVAVTAVDPDTGPWGK 507

Query: 369 -----YGTGGIVYELLGEYGIMYVR 388
                YGTG  ++ +    G++Y +
Sbjct: 508 VQYSIYGTGSDLFLIHPSTGLIYTQ 532

Potential calcium-dependent cell-adhesion protein. May be required for the structural integrity of the outer segment (OS) of photoreceptor cells.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
350402296	1897	PREDICTED: cadherin-87A-like [Bombus imp	0.726	0.148	0.423	8e-64
340729964	1903	PREDICTED: cadherin-87A-like [Bombus ter	0.726	0.148	0.423	8e-64
307178971	1772	Cadherin-87A [Camponotus floridanus]	0.726	0.159	0.424	1e-63
307207662	1705	Cadherin-87A [Harpegnathos saltator]	0.688	0.156	0.430	7e-63
380018274	1880	PREDICTED: cadherin-87A-like [Apis flore	0.690	0.142	0.427	2e-62
328782343	1904	PREDICTED: cadherin-87A-like [Apis melli	0.690	0.140	0.427	2e-62
332019447	1629	Cadherin-87A [Acromyrmex echinatior]	0.726	0.173	0.421	3e-62
170034680	1920	conserved hypothetical protein [Culex qu	0.966	0.195	0.357	6e-62
383851146	1889	PREDICTED: cadherin-87A-like [Megachile	0.688	0.141	0.407	8e-58
328709937	1838	PREDICTED: cadherin-87A-like [Acyrthosip	0.953	0.201	0.343	5e-57

>gi|350402296|ref|XP_003486436.1| PREDICTED: cadherin-87A-like [Bombus impatiens]

 Score =  250 bits (639), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 144/340 (42%), Positives = 197/340 (57%), Gaps = 58/340 (17%)

Query: 96  KYGIYGTDWFSLDRDSGELRVAQPL-YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQ 154
           K+GI   +   L+   G L + QPL YRE   +  +  +   DG +   T V+I+V D+Q
Sbjct: 214 KFGIVNVER-RLNSYMGALVLRQPLDYRERPFY--QLLLRASDGLNNETTGVEIKVADIQ 270

Query: 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTG 214
           N+PP F+NS  +G + E  PIG++V+ V+A+DGD   PR + Y+L+TNP ++FL+D  TG
Sbjct: 271 NSPPEFVNS-LTGVVREDDPIGTLVMTVKARDGDRGMPRKMIYELVTNPFDYFLLDDETG 329

Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
           EL+TAKPL+RE L  + GV++L VRARE++DG P  ++   + A+ TVTI DVND PP F
Sbjct: 330 ELRTAKPLNREALKDSTGVLTLEVRARELIDGMPGNDNLTVSTAEATVTIKDVNDEPPTF 389

Query: 275 NRKEYVVHIPEDIPDGSLLPDLDMIVTDSD------------------------------ 304
           NR+EY + IPE++P+G+ LP LDM V D D                              
Sbjct: 390 NRREYNIEIPENVPNGTPLPHLDMTVKDPDVGLNSVFSLRLDDITDGAFTIEPTMATGST 449

Query: 305 -----------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNA 341
                                  LV+AEE HT  KLSS+AT+ V +TD NDN P+F    
Sbjct: 450 SVNIRVANGSLDYENPNQRKFIILVVAEEVHTNPKLSSTATVTVSITDANDNSPTFSNPT 509

Query: 342 YTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
           YT  VLETA  GT++ TITA D D G +GT GI Y+LLG+
Sbjct: 510 YTAVVLETAPPGTTVITITAKDRDSGRFGTAGIAYQLLGQ 549

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729964|ref|XP_003403262.1| PREDICTED: cadherin-87A-like [Bombus terrestris]

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 144/340 (42%), Positives = 197/340 (57%), Gaps = 58/340 (17%)

Query: 96  KYGIYGTDWFSLDRDSGELRVAQPL-YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQ 154
           K+GI   +   L+   G L + QPL YRE   +  +  +   DG +   T V+I+V D+Q
Sbjct: 220 KFGIVNVER-RLNSYMGALVLRQPLDYRERPFY--QLLLRASDGLNNETTGVEIKVADIQ 276

Query: 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTG 214
           N+PP F+NS  +G + E  PIG++V+ V+A+DGD   PR + Y+L+TNP ++FL+D  TG
Sbjct: 277 NSPPEFVNS-LTGVVREDDPIGTLVMTVKARDGDRGMPRKMIYELVTNPFDYFLLDDETG 335

Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
           EL+TAKPL+RE L  + GV++L VRARE++DG P  ++   + A+ TVTI DVND PP F
Sbjct: 336 ELRTAKPLNREALKDSTGVLTLEVRARELIDGMPGNDNLTVSTAEATVTIKDVNDEPPTF 395

Query: 275 NRKEYVVHIPEDIPDGSLLPDLDMIVTDSD------------------------------ 304
           NR+EY + IPE++P+G+ LP LDM V D D                              
Sbjct: 396 NRREYNIEIPENVPNGTPLPHLDMTVKDPDVGLNSVFSLRLDDITDGAFTIEPTMATGST 455

Query: 305 -----------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNA 341
                                  LV+AEE HT  KLSS+AT+ V +TD NDN P+F    
Sbjct: 456 SVNIRVANGSLDYENPNQRKFIILVVAEEVHTNPKLSSTATVTVSITDANDNSPTFSNPT 515

Query: 342 YTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
           YT  VLETA  GT++ TITA D D G +GT GI Y+LLG+
Sbjct: 516 YTAVVLETAPPGTTVLTITAKDRDSGRFGTAGIAYQLLGQ 555

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178971|gb|EFN67487.1| Cadherin-87A [Camponotus floridanus]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/339 (42%), Positives = 197/339 (58%), Gaps = 57/339 (16%)

Query: 96  KYGIYGTDWFSLDRDSGELRVAQPL-YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQ 154
           K+GI   +  S +   G L + QPL YRE   +  +  +   DG +   T V+I+V D+Q
Sbjct: 95  KFGIVNVER-SQNTYVGALVLRQPLDYRERPFY--QLLLRASDGLNNRTTGVEIKVADIQ 151

Query: 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTG 214
           N+PP F++S  +G + E  PIG++V+ V+A+DGD   PR + Y+L+TNP ++FL+D +TG
Sbjct: 152 NSPPEFLDS-LTGVVREDDPIGTLVMTVKARDGDRGMPRKMIYELVTNPFDYFLLDDDTG 210

Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
           EL+TAKPLDRE L  + GV++L V+ARE++DG P  ++   + A+ TVTI DVND PP F
Sbjct: 211 ELRTAKPLDREALENSTGVLTLIVKARELIDGMPGNDNLTVSIAEATVTIKDVNDEPPTF 270

Query: 275 NRKEYVVHIPEDIPDGSLLPDLDMIVTDSD------------------------------ 304
           NR+EY + IPE++PDG+ LP LDM V D D                              
Sbjct: 271 NRREYNIEIPENVPDGTPLPHLDMTVKDPDVGLNSVFSLRLEDITGAFTVEPVLATGSTS 330

Query: 305 ----------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAY 342
                                 LV+AEE HT  KLSS+AT+ + +TD NDN PSF    Y
Sbjct: 331 VNIRVTNGSLDYENPNQRKFIILVVAEEVHTNPKLSSTATVTISITDANDNAPSFSNPTY 390

Query: 343 TGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
           T  V ETA  G+ I TITA D D G +GT GIVY+LLG+
Sbjct: 391 TATVSETAVPGSPIITITAKDRDSGRFGTTGIVYQLLGQ 429

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207662|gb|EFN85300.1| Cadherin-87A [Harpegnathos saltator]

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 139/323 (43%), Positives = 190/323 (58%), Gaps = 56/323 (17%)

Query: 112 GELRVAQPL-YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIM 170
           G L + QPL YRE   +  +  +   DG +   T V+I+V D+QN+PP F++S  +G + 
Sbjct: 41  GALMLKQPLDYRERPFY--QLLLRAFDGLNNGTTGVEIKVADIQNSPPEFLDS-LTGVVR 97

Query: 171 ESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGT 230
           E  PIG++V+ V+A+DGD   PR + Y+L+TNP ++FL+D +TGEL+TAKPLDRE L  +
Sbjct: 98  EDDPIGTLVMTVKARDGDRGMPRKMIYELVTNPFDYFLLDDDTGELRTAKPLDREALENS 157

Query: 231 NGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDG 290
            GV++L V+ARE++DG P  +    + A+ TVTI DVND PP FNR+EY + IPE++PDG
Sbjct: 158 TGVLTLIVKARELIDGIPGNDKLTVSTAEATVTIKDVNDEPPTFNRREYNIEIPENVPDG 217

Query: 291 SLLPDLDMIVTDSD---------------------------------------------- 304
           + LP+LDM V D D                                              
Sbjct: 218 TPLPNLDMTVKDPDVGSNSVFSLRLEDITGAFTVEPVLATGSTSVNIRVTNGSLDYENPN 277

Query: 305 ------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITT 358
                 LV+AEE HT+ KLSS+AT+ + +TD NDN PSF    YT  V ETA  G+ I T
Sbjct: 278 QRKFIILVVAEEVHTSPKLSSTATVTIAITDANDNAPSFGSPTYTSTVSETAPPGSPIIT 337

Query: 359 ITALDSDGGDYGTGGIVYELLGE 381
           I A D D G +GT GIVY+LLG+
Sbjct: 338 IMARDRDSGRFGTAGIVYQLLGQ 360

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018274|ref|XP_003693057.1| PREDICTED: cadherin-87A-like [Apis florea]

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/325 (42%), Positives = 190/325 (58%), Gaps = 57/325 (17%)

Query: 111 SGELRVAQPL-YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEI 169
           +G L + QPL YRE   +  +  +   DG +   T V+I+V D+QN+PP F++S  +G +
Sbjct: 212 TGALVLRQPLDYRERPFY--QLLLRASDGLNNETTGVEIKVADIQNSPPEFLDS-LTGVV 268

Query: 170 MESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGG 229
            E  PIG++V+ V+A+DGD   PR + Y+L+TNP ++FL+D  TGEL+TAKPL+RE L  
Sbjct: 269 REDDPIGTLVMTVKARDGDRGMPRKMIYELVTNPFDYFLLDDETGELRTAKPLNREALKD 328

Query: 230 TNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPD 289
           + GV++L VRARE++DG P  ++   + A+ TVTI DVND PP FNR+EY + IPE++P+
Sbjct: 329 STGVLTLKVRARELIDGMPGNDNLTVSTAEATVTIKDVNDEPPTFNRREYNIEIPENVPN 388

Query: 290 GSLLPDLDMIVTDSD--------------------------------------------- 304
           G+ LP LDM V D D                                             
Sbjct: 389 GTPLPHLDMTVKDPDVGLNSVFSLRLEDITDGAFTIEPTMATGSTSVNIRVANGSLDYEN 448

Query: 305 --------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSI 356
                   LV+AEE HT  KLSS+AT+ V +TD NDN P+F    YT  VLETA  GT +
Sbjct: 449 PNQRKFIILVVAEEVHTDPKLSSTATVTVSITDANDNSPTFSNPTYTAVVLETAPPGTPV 508

Query: 357 TTITALDSDGGDYGTGGIVYELLGE 381
            TITA D D G +GT GI Y+LLG+
Sbjct: 509 ITITAKDRDSGRFGTAGIAYQLLGQ 533

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782343|ref|XP_392736.4| PREDICTED: cadherin-87A-like [Apis mellifera]

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/325 (42%), Positives = 190/325 (58%), Gaps = 57/325 (17%)

Query: 111 SGELRVAQPL-YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEI 169
           +G L + QPL YRE   +  +  +   DG +   T V+I+V D+QN+PP F++S  +G +
Sbjct: 236 TGALVLRQPLDYRERPFY--QLLLRASDGLNNETTGVEIKVADIQNSPPEFLDS-LTGVV 292

Query: 170 MESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGG 229
            E  PIG++V+ V+A+DGD   PR + Y+L+TNP ++FL+D  TGEL+TAKPL+RE L  
Sbjct: 293 REDDPIGTLVMTVKARDGDRGMPRKMIYELVTNPFDYFLLDDETGELRTAKPLNREALKD 352

Query: 230 TNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPD 289
           + GV++L VRARE++DG P  ++   + A+ TVTI DVND PP FNR+EY + IPE++P+
Sbjct: 353 STGVLTLKVRARELIDGMPGNDNLTVSTAEATVTIKDVNDEPPTFNRREYNIEIPENVPN 412

Query: 290 GSLLPDLDMIVTDSD--------------------------------------------- 304
           G+ LP LDM V D D                                             
Sbjct: 413 GTPLPHLDMTVKDPDVGLNSVFSLRLEDITDGAFTIEPTMATGSTSVNIRVANGSLDYEN 472

Query: 305 --------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSI 356
                   LV+AEE HT  KLSS+AT+ V +TD NDN P+F    YT  VLETA  GT +
Sbjct: 473 PNQRKFIILVVAEEVHTDPKLSSTATVTVSITDANDNSPTFSNPTYTAVVLETAPPGTPV 532

Query: 357 TTITALDSDGGDYGTGGIVYELLGE 381
            TITA D D G +GT GI Y+LLG+
Sbjct: 533 ITITAKDRDSGRFGTAGIAYQLLGQ 557

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019447|gb|EGI59930.1| Cadherin-87A [Acromyrmex echinatior]

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/339 (42%), Positives = 195/339 (57%), Gaps = 57/339 (16%)

Query: 96  KYGIYGTDWFSLDRDSGELRVAQPL-YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQ 154
           K+GI   +  S +   G L + QPL YRE   +  +  +   DG +   T V+I+V D+Q
Sbjct: 8   KFGIVNVER-SQNTYVGALVLRQPLDYRERPFY--QLLLRASDGLNNGTTGVEIKVADIQ 64

Query: 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTG 214
           N+PP F++S  +G + E  PIG++V+ V+A+DGD   PR + Y+L+TNP ++FL+D +TG
Sbjct: 65  NSPPEFLDS-LTGVVREDDPIGTLVMTVKARDGDRGMPRKMIYELVTNPFDYFLLDDDTG 123

Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
           EL+TAKPLDRE L  + GV++L V+ARE++DG P  +    + A+ TVTI DVND PP F
Sbjct: 124 ELRTAKPLDREALENSTGVLTLIVKARELIDGIPGNDKLTVSTAEATVTIKDVNDEPPTF 183

Query: 275 NRKEYVVHIPEDIPDGSLLPDLDMIVTDSD------------------------------ 304
           NR+EY + IPE++ DG+ LP LDM V D D                              
Sbjct: 184 NRREYNIEIPENVQDGTPLPHLDMTVKDPDVGLNSVFSLRLEDITGAFTVEPVLATGSTS 243

Query: 305 ----------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAY 342
                                 LV+AEE HT  KLSS+AT+ + +TD NDN PSF    Y
Sbjct: 244 VNIRVTNGSLDYENPNQRKFIILVVAEEVHTNPKLSSTATVTISITDANDNAPSFGSPTY 303

Query: 343 TGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
           T  V ETA  G+ I TITA D D G +GT GIVY+LLG+
Sbjct: 304 TATVSETAAPGSPIITITAKDRDSGRFGTAGIVYQLLGQ 342

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034680|ref|XP_001845201.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876072|gb|EDS39455.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  244 bits (623), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 179/501 (35%), Positives = 248/501 (49%), Gaps = 126/501 (25%)

Query: 3   AYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRF-------- 54
           ++ N PP FT D+N+ L + E+TP G++V  LEG DPEG  V +G+ G++ F        
Sbjct: 36  SHCNLPPIFTQDMNN-LALSESTPVGSVVYRLEGFDPEGGNVSFGLLGSENFLVDPISGD 94

Query: 55  -----SLDRDSGEL---------RVAQP-LDREY-NSTNTSTIVLTLEGVD--PEGSKVK 96
                +LDR++ +          RV+   +D E  N  N    ++ L+  D  PE  KV 
Sbjct: 95  VKVIKALDRETQDTLSFSVTIKDRVSSSGIDSENDNVVNVPITIIVLDENDNPPEFQKVP 154

Query: 97  Y-------GIYGTDWFSL----DRDS-GE----LRVAQPLYREDGHHTS----------- 129
           Y        + GT  FS     D+D+ GE      + QP   +     S           
Sbjct: 155 YETEVLENALPGTTVFSAILVTDKDTVGENLDVTCIPQPHNPDACEKFSIEITESAQDRL 214

Query: 130 ------------------KTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIME 171
                             +  +D  DG   +   ++I V DVQN+PP+F   S +  I E
Sbjct: 215 TAAVVLNGRLDYNERMIYQILLDATDGMFNATAGLEIHVKDVQNSPPVF-QGSLAAVINE 273

Query: 172 SAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTN 231
            +PIG++V+ + A+DGD  QPR I Y+L+TNP ++FL+D  TGEL+TAKPLD+E L    
Sbjct: 274 DSPIGTLVMTIHARDGDRGQPRKIVYELITNPMDYFLLDRQTGELRTAKPLDKEALPDDT 333

Query: 232 GVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGS 291
           G+I LT++ARE++DG P  ++   A  Q ++TI DVNDSPP+FN+KEY V + E+   G+
Sbjct: 334 GLIILTIKARELIDGIPGNDNLTVATTQASITIRDVNDSPPMFNKKEYFVSMSENTAPGT 393

Query: 292 LLPDLDMIVTDSD----------------------------------------------- 304
            LP ++M V D D                                               
Sbjct: 394 PLP-IEMSVHDPDVGENAVFSLRLNDVSEVFDVEPKLVTGSSQISIRVANGSLDYENPNQ 452

Query: 305 -----LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTI 359
                LVIAEET T  KLSS+ATL V +TD NDN P FE ++Y+  VLETA AG  ITTI
Sbjct: 453 RKFIVLVIAEETKTNPKLSSTATLTVSITDSNDNRPVFEQDSYSTTVLETAHAGHLITTI 512

Query: 360 TALDSDGGDYGTGGIVYELLG 380
            A D D G +G  GI Y L G
Sbjct: 513 IAKDLDSGHFGDQGIRYSLSG 533

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851146|ref|XP_003701100.1| PREDICTED: cadherin-87A-like [Megachile rotundata]

 Score =  230 bits (587), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 132/324 (40%), Positives = 185/324 (57%), Gaps = 57/324 (17%)

Query: 112 GELRVAQPL-YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIM 170
           G L + QPL YRE   +  +  +   DG +   T V+I+VGD+QN+PP F++S  +G + 
Sbjct: 224 GALVLQQPLDYRERPFY--QLLLRASDGLNNETTGVEIKVGDIQNSPPEFLDS-LTGVVH 280

Query: 171 ESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGT 230
           E APIG++V+ V+A+DGD   PR I Y+L+ NP ++FL+D  TGEL+TAKPL+RE L  +
Sbjct: 281 EDAPIGTLVMTVKARDGDRGLPRKIIYELVNNPFDYFLLDDETGELRTAKPLNREALKDS 340

Query: 231 NGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDG 290
            GV+ L V+ARE++DG P  ++   + A+ TVTI DVND PP FN +EY + IPE++ +G
Sbjct: 341 TGVLKLKVKARELIDGIPGNDNLTVSTAEATVTIKDVNDEPPTFNHREYNIEIPENVMNG 400

Query: 291 SLLPDLDMIVTDSD---------------------------------------------- 304
           + L +LDM V D D                                              
Sbjct: 401 TPLRNLDMTVRDPDIGLNSVFSLRLEDITDGAFTIEPTVATGSTSVNIRVANGSLDYENP 460

Query: 305 -------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSIT 357
                  LV+AEE HT  KL+S+AT+ + +TDVNDN P+F    YT  + E A  G  + 
Sbjct: 461 NQRKFIILVVAEEIHTNPKLTSTATVTIAITDVNDNSPTFSSPTYTAVISELASPGMPVI 520

Query: 358 TITALDSDGGDYGTGGIVYELLGE 381
           TITA D D G +GT GI Y+LLG+
Sbjct: 521 TITAKDRDSGRFGTAGIAYQLLGQ 544

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709937|ref|XP_003244114.1| PREDICTED: cadherin-87A-like [Acyrthosiphon pisum]

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 171/498 (34%), Positives = 236/498 (47%), Gaps = 128/498 (25%)

Query: 3   AYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSK--VKYGIYGTDRFSLDRDS 60
           +Y +  P F   +++   + EN P G  +  LEGVD  G++  + YGI GTD   +D ++
Sbjct: 14  SYADDLPVFNKYMDNE-ALSENIPVGQSIYKLEGVDSFGNENDLLYGIEGTDHLVVDSNT 72

Query: 61  GELRVAQPLDREYNSTNTSTIVLT------------------------------LEGVDP 90
           G + VA+PLD E + T   T+ L                                EG+  
Sbjct: 73  GVVTVAKPLDHEESDTLKFTVTLQQKNSADVVRLPISVIILDENDNVPIFVHTPYEGMVS 132

Query: 91  EGSKVKYGIYGTDWFS---LDR--DSGELRVAQPLYREDGHHTSK--------------- 130
           E SK+   ++   W     LD+  +  E+R       +DG    K               
Sbjct: 133 EESKIGTTVFK--WIHVEDLDKVGEPLEVRCESIFQNDDGCLKFKIQSLNVSESYYLGVL 190

Query: 131 -TNVDIR--------------DGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPI 175
             N DI+              DG H +K N+DI V D+QN PPIF + S +  I E   +
Sbjct: 191 VVNGDIQYSDTQFYKLLLVATDGVHETKINLDIHVKDIQNMPPIF-HGSLTTVISEDISV 249

Query: 176 GSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVIS 235
           G+ +L V AKDGD   PRSI YDL+ NP ++F +D  +G L TAKP+DRE L   NG+I+
Sbjct: 250 GTHILTVNAKDGDRGDPRSIVYDLIQNPMDYFSLDGLSGNLSTAKPIDRETLSNNNGIIT 309

Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPD 295
           LTVRARE+ +G  L +  +++ A +T+T+ DVND PPVFN+++Y + IPE+I  G+ LP+
Sbjct: 310 LTVRAREVFNGSALDDKLSSSTAIITITVQDVNDEPPVFNKRDYFILIPENIAPGTPLPN 369

Query: 296 LDMIVTDSD--------------------------------------------------- 304
           L+M VTDSD                                                   
Sbjct: 370 LNMSVTDSDIGANSEFSLRLHDESKLFVIEPTKAIGSIDVGIKLANNVKLDYEDPNQRKF 429

Query: 305 --LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITAL 362
             LVIA E      L+S+ATL +QVTDVNDN P F+ NAYT  V ETA  GT I  + A 
Sbjct: 430 IVLVIASEPSEKYDLTSTATLTIQVTDVNDNPPEFDNNAYTLTVNETATPGTIIGVVKAT 489

Query: 363 DSDGGDYGTGGIVYELLG 380
           D D        IVY+L G
Sbjct: 490 DRDSN----PNIVYKLSG 503

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
FB|FBgn0037963	1975	Cad87A "Cadherin 87A" [Drosoph	0.445	0.087	0.52	1.3e-73
UNIPROTKB|F1MC84	4587	F1MC84 "Uncharacterized protei	0.548	0.046	0.311	7.5e-37
ZFIN|ZDB-GENE-040513-7	3366	cdh23 "cadherin-like 23" [Dani	0.729	0.084	0.280	2.1e-19
UNIPROTKB|F1NKC9	862	CDHR1 "Cadherin-related family	0.564	0.254	0.313	8.4e-36
UNIPROTKB|F1P185	865	CDHR1 "Cadherin-related family	0.564	0.253	0.313	8.6e-36
UNIPROTKB|Q8UVJ7	865	CDHR1 "Cadherin-related family	0.564	0.253	0.313	8.6e-36
FB|FBgn0036715	1820	Cad74A "Cadherin 74A" [Drosoph	0.425	0.090	0.357	1.4e-35
ZFIN|ZDB-GENE-050425-1	4611	fat1 "FAT tumor suppressor hom	0.492	0.041	0.356	2.2e-35
UNIPROTKB|F1STP0	4588	FAT3 "Uncharacterized protein"	0.569	0.048	0.315	7.1e-34
MGI|MGI:2444314	4555	Fat3 "FAT tumor suppressor hom	0.569	0.048	0.315	3.7e-33

FB|FBgn0037963 Cad87A "Cadherin 87A" [Drosophila melanogaster (taxid:7227)]

 Score = 447 (162.4 bits), Expect = 1.3e-73, Sum P(3) = 1.3e-73
 Identities = 91/175 (52%), Positives = 123/175 (70%)

Query:   133 VDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQP 192
             ++  DG H ++T  + RV DVQ+ PP+F   S S  I E +PI ++VL V A+DGD  +P
Sbjct:   218 IEATDGPHKTQTTFEARVKDVQDKPPVF-QGSLSTVIDEDSPINTLVLTVHARDGDTGEP 276

Query:   193 RSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQED 252
             R I YDL TNP+++FL+D+ TGEL+TAKPLDRE L  + G+ISL +RARE+V+G P  + 
Sbjct:   277 RKIVYDLRTNPNDYFLLDAQTGELRTAKPLDREALEDSTGIISLVIRARELVNGVPSDDP 336

Query:   253 QATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVI 307
               +A A+ TVTI DVNDSPPVFN KEY V + E+   G+ L  LDM V+D+D+ I
Sbjct:   337 LTSATAKATVTIRDVNDSPPVFNHKEYSVSLLENTLPGTPLA-LDMSVSDADVGI 390

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1MC84 F1MC84 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 288 (106.4 bits), Expect = 7.5e-37, Sum P(3) = 7.5e-37
 Identities = 71/228 (31%), Positives = 124/228 (54%)

Query:    88 VDPEGSKVKYGIYG--TDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTN 145
             + P G  ++Y +YG   + F LD +SGEL+   PL RE     S        G    +++
Sbjct:  3042 IGPNGD-IRYSLYGPGNNEFFLDPESGELKTLAPLDRERVPAYSLVARATDGGGRFCQSD 3100

Query:   146 VDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDE 205
             + + + DV + PP+F +  ++  + E+    +++ RV+A D D+   R + Y L  + + 
Sbjct:  3101 LRLTLEDVNDNPPVFSSDHYNACVYENTATKALLTRVQAVDPDVGVNRKVVYSLADSANG 3160

Query:   206 FFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTIL 265
             FF +DS++G +   +PLDRE         +L V+A +   G+ L     ++ A +++T+L
Sbjct:  3161 FFSVDSSSGIVVLERPLDRE----QQSSYTLRVQATDQSPGRAL-----SSLATISITVL 3211

Query:   266 DVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL-VIAEETH 312
             DVND+PPVF R++Y+V +PED   G+ +  L +  T  D+   AE T+
Sbjct:  3212 DVNDNPPVFERRDYLVSVPEDTSPGTQV--LAVFATSKDIGTNAEITY 3257

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-040513-7 cdh23 "cadherin-like 23" [Danio rerio (taxid:7955)]

 Score = 264 (98.0 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 88/314 (28%), Positives = 139/314 (44%)

Query:    73 YNSTNTSTIVLTLEGVDPEGSKVKYGIYGTD---WFSLDRDSGELRVAQPLYREDGHHTS 129
             Y  T   T +  L+ VDP+G  + +G+ G +   +F++   +G + + QPL RE      
Sbjct:    49 YEDTPVGTSITQLQAVDPDGEPLIFGVVGEEAMRYFAVQGTTGVVWLRQPLDRE-AKSEM 107

Query:   130 KTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDL 189
             +    + D     K  V+I++GDV +  P F N  ++ +I E+ P+G+ V  V A D D 
Sbjct:   108 QVEFTVSDSQGVVKDTVNIQIGDVNDNAPSFYNQPYAIQIPENTPVGTSVFMVNATDPDQ 167

Query:   190 AQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPL 249
                 S+ +     P +FF ID   G +   + LD E    T     LTV A +    +PL
Sbjct:   168 GVGGSVLFSFQP-PSQFFSIDGARGIVTVTRALDYE----TTIAYQLTVNATDQDKRRPL 222

Query:   250 QEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL---- 305
                  ++ A + +TI D+ D  P+F    Y  +I ED P G  +  +  I  D DL    
Sbjct:   223 -----SSLANLAITITDIQDMDPIFTNLPYSTNIMEDAPPGYEVRKIRAI--DQDLGRPR 275

Query:   306 -----VIAEETHTA---EKLSSSATLIVQVTDVNDNVPS---FELNAYTGNVLETAQAGT 354
                  +I+  T++    + +S S T+  Q+   N    S     + A   N   T  + T
Sbjct:   276 GIGYTIISGNTNSMFALDYISGSLTVSGQLDRENPLYSSGFIITVKATELNDDRTPSSAT 335

Query:   355 SITTITALDSDGGD 368
               TT T L  D  D
Sbjct:   336 VTTTFTILLIDKND 349

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0035315 "hair cell differentiation" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0005929 "cilium" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0050957 "equilibrioception" evidence=IMP

GO:0030030 "cell projection organization" evidence=IMP

GO:0060117 "auditory receptor cell development" evidence=IMP

GO:0035678 "neuromast hair cell morphogenesis" evidence=IMP

GO:0050974 "detection of mechanical stimulus involved in sensory perception" evidence=IMP

GO:0060122 "inner ear receptor stereocilium organization" evidence=IMP

GO:0042895 "antibiotic transporter activity" evidence=IMP

UNIPROTKB|F1NKC9 CDHR1 "Cadherin-related family member 1" [Gallus gallus (taxid:9031)]

 Score = 238 (88.8 bits), Expect = 8.4e-36, Sum P(3) = 8.4e-36
 Identities = 80/255 (31%), Positives = 127/255 (49%)

Query:    74 NSTNTSTIVLTLEGVDPE---GSKVKYGIYG--TDWFSLDRDSGELRVAQPLYREDGHHT 128
             NS + S+I   +E VD +   G  + Y +     + F++DR SG LR+   +  +  +  
Sbjct:   145 NSPSGSSI-FKIEAVDRDTGSGGSITYFLQNIHANKFTIDRHSGVLRIKSGVTLD--YEK 201

Query:   129 SKTN---VDIRDGH---------HTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIG 176
             S+T+   V  +DG           ++ T V + V DVQ+TPP+FI + + G + E    G
Sbjct:   202 SRTHFVVVVAKDGGGKLRGDNKVFSATTTVTVNVEDVQDTPPMFIGTPYYGYVYEDTLPG 261

Query:   177 SVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISL 236
             S VL V A DGD  +P +I+Y ++   +  F I + TG +   K  ++        V  L
Sbjct:   262 SEVLTVVALDGDRGKPNNIHYCIVNGSEGSFEISNTTGAISVIKSPNQL----KKEVYEL 317

Query:   237 TVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF-------NRKEYVVHIPEDIPD 289
              V+A E+    P  +  A AFA VT+ ++D+N+ PP F       NR E  ++  E  P+
Sbjct:   318 RVQASEV---SPEGDVSAYAFATVTIRVVDLNNHPPTFYGESGPQNRFELTMY--EHPPE 372

Query:   290 GSLLPDLDMIVTDSD 304
             G +L  L + V DSD
Sbjct:   373 GEILRGLKITVNDSD 387

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P185 CDHR1 "Cadherin-related family member 1" [Gallus gallus (taxid:9031)]

 Score = 238 (88.8 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
 Identities = 80/255 (31%), Positives = 127/255 (49%)

Query:    74 NSTNTSTIVLTLEGVDPE---GSKVKYGIYG--TDWFSLDRDSGELRVAQPLYREDGHHT 128
             NS + S+I   +E VD +   G  + Y +     + F++DR SG LR+   +  +  +  
Sbjct:   149 NSPSGSSI-FKIEAVDRDTGSGGSITYFLQNIHANKFTIDRHSGVLRIKSGVTLD--YEK 205

Query:   129 SKTN---VDIRDGH---------HTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIG 176
             S+T+   V  +DG           ++ T V + V DVQ+TPP+FI + + G + E    G
Sbjct:   206 SRTHFVVVVAKDGGGKLRGDNKVFSATTTVTVNVEDVQDTPPMFIGTPYYGYVYEDTLPG 265

Query:   177 SVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISL 236
             S VL V A DGD  +P +I+Y ++   +  F I + TG +   K  ++        V  L
Sbjct:   266 SEVLTVVALDGDRGKPNNIHYCIVNGDEGSFEISNTTGAISVIKSPNQL----KKEVYEL 321

Query:   237 TVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF-------NRKEYVVHIPEDIPD 289
              V+A E+    P  +  A AFA VT+ ++D+N+ PP F       NR E  ++  E  P+
Sbjct:   322 RVQASEV---SPEGDVSAYAFATVTIRVVDLNNHPPTFYGESGPQNRFELTMY--EHPPE 376

Query:   290 GSLLPDLDMIVTDSD 304
             G +L  L + V DSD
Sbjct:   377 GEILRGLKITVNDSD 391

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0042622 "photoreceptor outer segment membrane" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

UNIPROTKB|Q8UVJ7 CDHR1 "Cadherin-related family member 1" [Gallus gallus (taxid:9031)]

 Score = 238 (88.8 bits), Expect = 8.6e-36, Sum P(3) = 8.6e-36
 Identities = 80/255 (31%), Positives = 127/255 (49%)

Query:    74 NSTNTSTIVLTLEGVDPE---GSKVKYGIYG--TDWFSLDRDSGELRVAQPLYREDGHHT 128
             NS + S+I   +E VD +   G  + Y +     + F++DR SG LR+   +  +  +  
Sbjct:   149 NSPSGSSI-FKIEAVDRDTGSGGSITYFLQNIHANKFTIDRHSGVLRIKSGVTLD--YEK 205

Query:   129 SKTN---VDIRDGH---------HTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIG 176
             S+T+   V  +DG           ++ T V + V DVQ+TPP+FI + + G + E    G
Sbjct:   206 SRTHFVVVVAKDGGGKLRGDNKVFSATTTVTVNVEDVQDTPPMFIGTPYYGYVYEDTLPG 265

Query:   177 SVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISL 236
             S VL V A DGD  +P +I+Y ++   +  F I + TG +   K  ++        V  L
Sbjct:   266 SEVLTVVALDGDRGKPNNIHYCIVNGSEGSFEISNTTGAISVIKSPNQL----KKEVYEL 321

Query:   237 TVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF-------NRKEYVVHIPEDIPD 289
              V+A E+    P  +  A AFA VT+ ++D+N+ PP F       NR E  ++  E  P+
Sbjct:   322 RVQASEV---SPEGDVSAYAFATVTIRVVDLNNHPPTFYGESGPQNRFELTMY--EHPPE 376

Query:   290 GSLLPDLDMIVTDSD 304
             G +L  L + V DSD
Sbjct:   377 GEILRGLKITVNDSD 391

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0036715 Cad74A "Cadherin 74A" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
 Identities = 64/179 (35%), Positives = 95/179 (53%)

Query:   137 DGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIY 196
             D   +S   + I V D+Q+ PPIF N+ +S  + E+ P G  +L V+A DGD+  PR I+
Sbjct:   222 DNRLSSLATISINVIDIQDQPPIFTNAPYSATVPENTPAGVSILTVKAVDGDVGIPREIF 281

Query:   197 YDLLTNP-DEFFLID-----SNTGELKT-AKPLDRE---ILGGTNGVISLTVRAREMVDG 246
               L   P   F L+        T  L+T ++PLDRE   IL    GV   ++RA E++DG
Sbjct:   282 LSLEDEPFGHFELVPFGDPRDGTAVLQTTSEPLDRENAEILQN-GGVYVFSIRATELIDG 340

Query:   247 KPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
                 E   T   +VT+ + DV+D  P F+   + V I E++ +G  LP L + V D D+
Sbjct:   341 AIPAEHSLT---RVTIVVTDVDDHQPTFSGPHFNVSITENLANGMPLPGLSIFVDDRDM 396

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0046843 "dorsal appendage formation" evidence=IDA

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005509 "calcium ion binding" evidence=IDA

GO:0044331 "cell-cell adhesion mediated by cadherin" evidence=IDA

ZFIN|ZDB-GENE-050425-1 fat1 "FAT tumor suppressor homolog 1" [Danio rerio (taxid:7955)]

 Score = 285 (105.4 bits), Expect = 2.2e-35, Sum P(3) = 2.2e-35
 Identities = 73/205 (35%), Positives = 112/205 (54%)

Query:    94 KVKYGIYGTDW---FSLDRDSGELRVAQPLYRED-GHHTSKTNV-DIRDGHHTSKTNVDI 148
             K+ Y I G D    F +D DSG L+V  PL RE   H+T    V D+     +S   +D+
Sbjct:   749 KLVYVISGGDAESRFIIDMDSGWLKVFAPLDRETTDHYTLNITVYDLGIPQKSSSRLLDV 808

Query:   149 RVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFL 208
             ++ D  +  P F+  ++S EI ES+ +G+ V++VEAKD DL     + Y +L + D+F  
Sbjct:   809 KILDANDNSPQFLKETYSVEISESSTVGTEVIQVEAKDKDLGDNGVVRYSILADTDQF-A 867

Query:   209 IDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVN 268
             ID+ TG +   KPLDRE+      V  L + AR+    +P    Q  +   + +T+ DVN
Sbjct:   868 IDTETGIVTVKKPLDREV----QPVFVLKIAARDQATAEP----QLVSTVLLKITLEDVN 919

Query:   269 DSPPVFNRKEYVVHIPEDIPDGSLL 293
             D+PP F    Y V + ED+P G+++
Sbjct:   920 DNPPKFIPPNYHVRVREDLPIGTVI 944

GO:0005509 "calcium ion binding" evidence=IEA;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1STP0 FAT3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 280 (103.6 bits), Expect = 7.1e-34, Sum P(3) = 7.1e-34
 Identities = 77/244 (31%), Positives = 134/244 (54%)

Query:    78 TSTIVLTLEGVDPE-GSK--VKYGIYGT--DWFSLDRDSGELRVAQPLYREDGHHTSKTN 132
             ++ I+L +   D + GS   ++Y +YG+  + F LD +SGEL+    L R D       N
Sbjct:  3043 SNKIILKVSAKDADIGSNGDIRYSLYGSGNNEFFLDPESGELKT---LARLDRERIPVYN 3099

Query:   133 VDIR--DGH-HTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDL 189
             +  R  DG     ++++ + + DV + PP+F +  ++  + E+    +++ RV+A D D+
Sbjct:  3100 LVARATDGGGRFCQSDIRLILEDVNDNPPVFSSDHYNACVYENTATKALLTRVQAMDPDV 3159

Query:   190 AQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPL 249
                R + Y L  + + FF ID ++G +   +PLDRE     N    ++VRA +   G+ L
Sbjct:  3160 GINRKVVYSLADSANGFFSIDGSSGIVILEQPLDREQQSAYN----ISVRATDQSPGQAL 3215

Query:   250 QEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL-VIA 308
                  ++ A VT+T+LD+ND+PPVF R++Y+V +PED   G+ +  L +  T  D+   A
Sbjct:  3216 -----SSLATVTITVLDINDNPPVFERRDYLVTVPEDTSPGTQV--LAVFATSKDIGTNA 3268

Query:   309 EETH 312
             E T+
Sbjct:  3269 EITY 3272

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:2444314 Fat3 "FAT tumor suppressor homolog 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 277 (102.6 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
 Identities = 77/244 (31%), Positives = 132/244 (54%)

Query:    78 TSTIVLTLEGVDPE-GSK--VKYGIYGT--DWFSLDRDSGELRVAQPLYREDGHHTSKTN 132
             ++ I+L +   D + GS   ++Y +YG+  + F LD +SGEL+    L RE        N
Sbjct:  3043 SNKIILKVSAKDADIGSNGDIRYSLYGSGNNEFFLDPESGELKTLAVLDRE---RVPVYN 3099

Query:   133 VDIR---DGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDL 189
             +  R    G     ++V + + DV + PP+F ++ ++  + E+    +++ RV+A D D+
Sbjct:  3100 LIARATDGGGRFCSSSVLLLLEDVNDNPPVFSSNHYTACVYENTATKALLTRVQAMDPDV 3159

Query:   190 AQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPL 249
                R + Y L  +    F IDS++G +   +PLDRE     N    ++VRA +   G+ L
Sbjct:  3160 GINRKVVYSLEDSASGVFSIDSSSGVIVLEQPLDREQQSSYN----ISVRATDQSPGQSL 3215

Query:   250 QEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL-VIA 308
                  ++ A VT+T+LD+ND+PPVF R++Y+V +PED   G+ +  L +  T  D+   A
Sbjct:  3216 -----SSLASVTITVLDINDNPPVFERRDYLVTVPEDTSLGTQV--LSVFATSKDIGTNA 3268

Query:   309 EETH 312
             E T+
Sbjct:  3269 EITY 3272

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	388
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	1e-20
pfam00028	92	pfam00028, Cadherin, Cadherin domain	3e-15
smart00112	81	smart00112, CA, Cadherin repeats	4e-13
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	5e-09
pfam00028	92	pfam00028, Cadherin, Cadherin domain	4e-07
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	4e-04
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	0.004

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 85.4 bits (212), Expect = 1e-20
 Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 11/107 (10%)

Query: 164 SFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPL 222
           S+   + E+AP G+VVL V A D D  +   + Y +++ N D  F ID +TGE+ TAKPL
Sbjct: 1   SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60

Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVND 269
           DRE         +LTV A +   G P      ++ A VT+T+LDVND
Sbjct: 61  DRE----EQSSYTLTVTATDG--GGP----PLSSTATVTITVLDVND 97

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 70.0 bits (172), Expect = 3e-15
 Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 11/102 (10%)

Query: 165 FSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGELKTAKPLD 223
           +S  + E+AP+G+ VL V A D DL     I+Y +L   P  +F ID +TG+L T KPLD
Sbjct: 1   YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLD 60

Query: 224 REILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTIL 265
           RE    + G   LTV A +   G PL     ++   VT+T+L
Sbjct: 61  RE----SIGEYELTVLATDS-GGPPL-----SSTTTVTITVL 92

Length = 92

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 63.9 bits (156), Expect = 4e-13
 Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 11/90 (12%)

Query: 184 AKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRARE 242
           A D D  +   + Y +L+ N D  F ID  TGE+ T KPLDRE         +LTV A +
Sbjct: 2   ATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDRE----EQPEYTLTVEATD 57

Query: 243 MVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
              G PL     ++ A VT+T+LDVND+ P
Sbjct: 58  G-GGPPL-----SSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 21 VEENTPPGTIVSTLEGVDP---EGSKVKYGIYGTD---RFSLDRDSGELRVAQPLDREYN 74
          V EN PPGT+V T+   DP   E  +V Y I   +    FS+D  +GE+  A+PLDRE  
Sbjct: 6  VPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDRE-- 63

Query: 75 STNTSTIVLTLEGVDPEG 92
              S+  LT+   D  G
Sbjct: 64 --EQSSYTLTVTATDGGG 79

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 21 VEENTPPGTIVSTLEGVDPEG---SKVKYGIYGTDR---FSLDRDSGELRVAQPLDREYN 74
          V EN P GT V T+   D +     ++ Y I G      F +D D+G+L   +PLDRE  
Sbjct: 5  VPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDRESI 64

Query: 75 STNTSTIVLTLEGVDP 90
               T++ T  G  P
Sbjct: 65 GEYELTVLATDSGGPP 80

Length = 92

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 10/83 (12%)

Query: 80  TIVLTLEGVDP---EGSKVKYGIYGTD---WFSLDRDSGELRVAQPLYREDGHHTSKTNV 133
           T+VLT+   DP   E  +V Y I   +    FS+D  +GE+  A+PL RE+    + T V
Sbjct: 14  TVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDREEQSSYTLT-V 72

Query: 134 DIRDGH---HTSKTNVDIRVGDV 153
              DG     +S   V I V DV
Sbjct: 73  TATDGGGPPLSSTATVTITVLDV 95

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 342 YTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
           Y  +V E A  GT + T++A D D G+ G   + Y ++  
Sbjct: 2   YEVSVPENAPPGTVVLTVSATDPDSGENGE--VTYSIVSG 39

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	388
KOG4289|consensus	2531		100.0
KOG4289|consensus	2531		100.0
KOG1219|consensus	4289		100.0
KOG1219|consensus	4289		100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.97
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.89
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.69
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.58
KOG1834|consensus	952		99.55
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.52
KOG1834|consensus	952		99.35
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.34
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	97.69
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	97.61
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.43
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	95.96
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	94.17
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	93.63
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	92.98
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	92.2
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	82.19

>KOG4289|consensus

Probab=100.00  E-value=8.1e-60  Score=468.14  Aligned_cols=364  Identities=29%  Similarity=0.453  Sum_probs=314.6

Q ss_pred             CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCccc
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYN   74 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~   74 (388)
                      |+|.|||+|.|.++.|. +.|.|+..++++|++|+|+|.|   |+.++|+|.++   +.|.||..||+|.+..+||+|..
T Consensus       364 V~D~NDNaPqFse~~Yv-vqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~tGel~vv~plD~e~~  442 (2531)
T KOG4289|consen  364 VEDENDNAPQFSEKRYV-VQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSLTGELDVVEPLDFENS  442 (2531)
T ss_pred             EEecCCCCccccccceE-EEecccCCCCceEEEEEecccCCCcCceEEEEeeccCccccEEEecccceEEEeccccccCC
Confidence            68999999999999999 9999999999999999999998   79999999974   48999999999999999999988


Q ss_pred             ceeeEEEEEEEEec--C---------------------------------------------------------------
Q psy4200          75 STNTSTIVLTLEGV--D---------------------------------------------------------------   89 (388)
Q Consensus        75 ~~~~~~l~v~a~D~--~---------------------------------------------------------------   89 (388)
                       .|+  +.|+|+|.  |                                                               
T Consensus       443 -~yt--l~IrAqDggrPpLsn~sgl~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~l~y~laG  519 (2531)
T KOG4289|consen  443 -EYT--LRIRAQDGGRPPLSNTSGLVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENARLHYSLAG  519 (2531)
T ss_pred             -eeE--EEEEcccCCCCCccCCCceEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCCCcccceeeeecc
Confidence             899  88888882  2                                                               


Q ss_pred             ----------------------------------------------------------CCCccceeee-------eccee
Q psy4200          90 ----------------------------------------------------------PEGSKVKYGI-------YGTDW  104 (388)
Q Consensus        90 ----------------------------------------------------------P~f~~~~~~~-------~g~~v  104 (388)
                                                                                |.|++..|..       .|+.|
T Consensus       520 ~~pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl~inED~pvgsSI  599 (2531)
T KOG4289|consen  520 VGPFQINNGSGWITVTKELDRETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTLRINEDAPVGSSI  599 (2531)
T ss_pred             CCCeeEecCCceEEEeecccccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccccCceEEEecCCccccceE
Confidence                                                                      5565555554       45555


Q ss_pred             EE---ecCCccE-E--EE----------------------cCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCC
Q psy4200         105 FS---LDRDSGE-L--RV----------------------AQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNT  156 (388)
Q Consensus       105 ~~---~D~d~g~-~--~~----------------------~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~  156 (388)
                      ++   +|.|... +  .+                      ..++++.. ..+..+.|+|+||++.+.+.|.|.|.|.|.+
T Consensus       600 ~tvtAvD~d~~s~ityqi~g~ntrn~Fsi~si~g~Glitlalp~dkKq-e~~~vl~vtAtDg~l~d~~~V~v~I~danTh  678 (2531)
T KOG4289|consen  600 VTVTAVDRDANSVITYQITGGNTRNRFSISSIGGGGLITLALPLDKKQ-ERQYVLAVTATDGTLQDTCSVNVNITDANTH  678 (2531)
T ss_pred             EEEEEeccccccceEEEecCCcccccceeeccCCcceEEeecchhhcc-cceEEEEEEecCCccccceEEEEEeeecccC
Confidence            54   4444311 0  00                      00011000 1112677899999999999999999999999


Q ss_pred             CCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcccEEEE
Q psy4200         157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISL  236 (388)
Q Consensus       157 ~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l  236 (388)
                      .|.|...+|.++|.|..|.|+.|..+.|+|.|.|+|++|+|-+.   +..|+||+.+|.+++...||||.    +-.|++
T Consensus       679 rpvFqs~pfTvsI~e~rP~G~tvvtlsasd~D~geNARI~y~le---d~~Frid~dsg~i~t~~~ld~ed----qvtytl  751 (2531)
T KOG4289|consen  679 RPVFQSSPFTVSINEDRPLGTTVVTLSASDEDTGENARITYILE---DEAFRIDPDSGAIYTQAELDYED----QVTYTL  751 (2531)
T ss_pred             CcccccCCeeEeeccCCcCCceeEEEecccCCCCccceEEEEec---ccceeecCCCCceEEeeeeeccc----ceeeEe
Confidence            99999999999999999999999999999999999999999443   24599999999999999999999    668999


Q ss_pred             EEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC------------
Q psy4200         237 TVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD------------  304 (388)
Q Consensus       237 ~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D------------  304 (388)
                      .++|+|  +|.|    +..++.+|.|.|.|+|||+|+|..+.|.++|.|++|++|.+.  +++|+|+|            
T Consensus       752 ~itA~D--~~~p----q~adtttveV~v~diNDnaPqf~assyt~sV~Ed~Pv~Tsvl--QVSatDaD~g~Ng~v~y~~q  823 (2531)
T KOG4289|consen  752 AITARD--NGIP----QKADTTTVEVLVNDINDNAPQFLASSYTGSVFEDAPVFTSVL--QVSATDADSGPNGRVYYTFQ  823 (2531)
T ss_pred             eeeecC--CCCC----CcCccEEEEEEeecccccCcccchhhceeEeecCCCCcceEE--EEEEeccCCCCCceEEEEec
Confidence            999998  7765    678999999999999999999999999999999999999995  99999999            


Q ss_pred             ----------------------------------eEEEEecCCCceeEEEEEEEEEEEeCCCCCCeeeccceEEEEecCC
Q psy4200         305 ----------------------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETA  350 (388)
Q Consensus       305 ----------------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~~v~e~~  350 (388)
                                                        .+.|+| .|.|++++.+.|+|+|+|+|||||+|.+.+|...|.||.
T Consensus       824 g~~d~p~~F~IEptSGviRtl~rLdRE~~avy~L~a~avD-rg~p~ls~~~eItvtvldvNDnaPvfe~~e~e~~I~ens  902 (2531)
T KOG4289|consen  824 GGDDGPGDFYIEPTSGVIRTLRRLDRENVAVYVLAAYAVD-RGNPPLSAPVEITVTVLDVNDNAPVFEQDELELFIEENS  902 (2531)
T ss_pred             CCCCCCCceEEccCcceeehhhhhcchheeEEEEEEEEee-CCCCCcCCceEEEEEEEecCCCCCCCCCcceeeEEeecC
Confidence                                              234455 688999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEEEEcCCCCCCCceeEEEEEEcCceeEEe
Q psy4200         351 QAGTSITTITALDSDGGDYGTGGIVYELLGEYGIMYV  387 (388)
Q Consensus       351 ~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~~~~~  387 (388)
                      +.|+.+++|.|.|+|+|+|+.  |.|+|+++...-+|
T Consensus       903 pvgs~va~i~a~dpdEG~NA~--IsYqIvgg~d~~~f  937 (2531)
T KOG4289|consen  903 PVGSVVALITADDPDEGPNAH--ISYQIVGGNDPELF  937 (2531)
T ss_pred             ccceeeEEEEccCCCcCCcce--EEEeeccCccHHHH
Confidence            999999999999999999988  99999977655444

>KOG4289|consensus

Probab=100.00  E-value=3.2e-57  Score=449.73  Aligned_cols=360  Identities=30%  Similarity=0.483  Sum_probs=319.4

Q ss_pred             CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCccc
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYN   74 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~   74 (388)
                      |.|.|||.|+|.++.|. -++.||.++|+.|.+|+|+|.|   |+.|+|++.++   +.|.||+.+|.|+++.+||||+.
T Consensus       259 V~D~nDhsPvFEq~~Y~-e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~~~~f~in~rSGvI~T~a~lDRE~~  337 (2531)
T KOG4289|consen  259 VLDTNDHSPVFEQDEYR-EELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNAKNVFEINPRSGVISTRAPLDREEL  337 (2531)
T ss_pred             EeecCCCCcccchhHHH-HHHhhccccCceEEEEEeccCCCCCCCceEEEecCCCccceeEEcCccceeeccCccCHHhh
Confidence            56999999999999999 9999999999999999999998   79999999975   57999999999999999999999


Q ss_pred             ceeeEEEEEEEEecC---------------------CCCccceeee-------ecceeEE--------------------
Q psy4200          75 STNTSTIVLTLEGVD---------------------PEGSKVKYGI-------YGTDWFS--------------------  106 (388)
Q Consensus        75 ~~~~~~l~v~a~D~~---------------------P~f~~~~~~~-------~g~~v~~--------------------  106 (388)
                      ..|.  |.|.|.|.+                     |.|++..|..       +++.+.+                    
T Consensus       338 ~~y~--L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~S  415 (2531)
T KOG4289|consen  338 ESYQ--LDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIAS  415 (2531)
T ss_pred             hheE--EEEEeccCCCCCCCceEEEEEEEEecCCCCccccccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeec
Confidence            9999  777777721                     9999888876       4444444                    


Q ss_pred             --------ecCCccEEEEcCCCCccccceEEEEEEEeeCCC---ceeEEEEEEEEeecCCCCCeeeCCcceEEEecCCCC
Q psy4200         107 --------LDRDSGELRVAQPLYREDGHHTSKTNVDIRDGH---HTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPI  175 (388)
Q Consensus       107 --------~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~---~~~~~~v~V~V~dvNd~~P~f~~~~~~~~v~E~~~~  175 (388)
                              +|..+|+|.+..++|.|..  ...+.++|.||+   ++...-+.|.|+|+|||+|.|....+..+|.|+.+.
T Consensus       416 gn~~G~f~id~~tGel~vv~plD~e~~--~ytl~IrAqDggrPpLsn~sgl~iqVlDINDhaPifvstpfq~tvlEnv~l  493 (2531)
T KOG4289|consen  416 GNGRGQFYIDSLTGELDVVEPLDFENS--EYTLRIRAQDGGRPPLSNTSGLVIQVLDINDHAPIFVSTPFQATVLENVPL  493 (2531)
T ss_pred             cCccccEEEecccceEEEeccccccCC--eeEEEEEcccCCCCCccCCCceEEEEEecCCCCceeEechhhhhhhhcccc
Confidence                    4444455566777777776  446889999986   456667779999999999999999999999999999


Q ss_pred             CcEEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCCCCcCCCCce
Q psy4200         176 GSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQAT  255 (388)
Q Consensus       176 g~~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~  255 (388)
                      |..++.+.|.|+|.|.|+.+.|++.+  -+.|.|+..+|.|++.+.||||+    ...|.|.|.|+|  .|.|    +++
T Consensus       494 g~~v~~vqaidadsg~na~l~y~laG--~~pf~I~~~SG~Itvtk~ldrEt----~~~ysl~V~ard--~gtp----~l~  561 (2531)
T KOG4289|consen  494 GYLVCHVQAIDADSGENARLHYSLAG--VGPFQINNGSGWITVTKELDRET----VEHYSLGVEARD--HGTP----PLS  561 (2531)
T ss_pred             cceEEEEecccCCCCcccceeeeecc--CCCeeEecCCceEEEeecccccc----cceEEEEEEEcC--CCCC----ccc
Confidence            99999999999999999999999975  35899999999999999999999    458999999998  5665    688


Q ss_pred             EEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC-------------------------------
Q psy4200         256 AFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD-------------------------------  304 (388)
Q Consensus       256 ~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D-------------------------------  304 (388)
                      +.+.|.|.+.|+|||.|+|++.+|+..+.|+.+.|+.|.  +++|+|.|                               
T Consensus       562 tstsI~Vtv~dvndndP~Ft~~eytl~inED~pvgsSI~--tvtAvD~d~~s~ityqi~g~ntrn~Fsi~si~g~Glitl  639 (2531)
T KOG4289|consen  562 TSTSISVTVLDVNDNDPTFTQKEYTLRINEDAPVGSSIV--TVTAVDRDANSVITYQITGGNTRNRFSISSIGGGGLITL  639 (2531)
T ss_pred             ccceEEEEecccCCCCCccccCceEEEecCCccccceEE--EEEEeccccccceEEEecCCcccccceeeccCCcceEEe
Confidence            899999999999999999999999999999999999995  99999999                               


Q ss_pred             --------------------------------------------------------------------------------
Q psy4200         305 --------------------------------------------------------------------------------  304 (388)
Q Consensus       305 --------------------------------------------------------------------------------  304 (388)
                                                                                                      
T Consensus       640 alp~dkKqe~~~vl~vtAtDg~l~d~~~V~v~I~danThrpvFqs~pfTvsI~e~rP~G~tvvtlsasd~D~geNARI~y  719 (2531)
T KOG4289|consen  640 ALPLDKKQERQYVLAVTATDGTLQDTCSVNVNITDANTHRPVFQSSPFTVSINEDRPLGTTVVTLSASDEDTGENARITY  719 (2531)
T ss_pred             ecchhhcccceEEEEEEecCCccccceEEEEEeeecccCCcccccCCeeEeeccCCcCCceeEEEecccCCCCccceEEE
Confidence                                                                                            


Q ss_pred             --------------------------------eEEEEecCCCceeEEEEEEEEEEEeCCCCCCeeeccceEEEEecCCCC
Q psy4200         305 --------------------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQA  352 (388)
Q Consensus       305 --------------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~~v~e~~~~  352 (388)
                                                      .++|.| .+.|+...+++|.|.|.|+|||+|+|..+.|.++|.|++++
T Consensus       720 ~led~~Frid~dsg~i~t~~~ld~edqvtytl~itA~D-~~~pq~adtttveV~v~diNDnaPqf~assyt~sV~Ed~Pv  798 (2531)
T KOG4289|consen  720 ILEDEAFRIDPDSGAIYTQAELDYEDQVTYTLAITARD-NGIPQKADTTTVEVLVNDINDNAPQFLASSYTGSVFEDAPV  798 (2531)
T ss_pred             EecccceeecCCCCceEEeeeeecccceeeEeeeeecC-CCCCCcCccEEEEEEeecccccCcccchhhceeEeecCCCC
Confidence                                            123333 57788999999999999999999999999999999999999


Q ss_pred             CcEEEEEEEEcCCCCCCCceeEEEEEEcCc
Q psy4200         353 GTSITTITALDSDGGDYGTGGIVYELLGEY  382 (388)
Q Consensus       353 g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~  382 (388)
                      +|.|++|.|+|+|.|.||+  +-|.+.|+.
T Consensus       799 ~TsvlQVSatDaD~g~Ng~--v~y~~qg~~  826 (2531)
T KOG4289|consen  799 FTSVLQVSATDADSGPNGR--VYYTFQGGD  826 (2531)
T ss_pred             cceEEEEEEeccCCCCCce--EEEEecCCC
Confidence            9999999999999999997  888887443

>KOG1219|consensus

Probab=100.00  E-value=1.6e-53  Score=435.24  Aligned_cols=360  Identities=28%  Similarity=0.406  Sum_probs=303.5

Q ss_pred             CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC-CCeEEEEEec----CCcEEEeCCeeEEEEcccCCCcccc
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE-GSKVKYGIYG----TDRFSLDRDSGELRVAQPLDREYNS   75 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D-~~~i~y~i~~----~~~F~Id~~tG~i~~~~~lD~e~~~   75 (388)
                      |+|+|||||+|.+..|. ++++|++++|+.|.++.|+|.| |..|.|+|.+    ...|.|+..||.|++.+.||||+..
T Consensus      2168 V~dIndn~PvFeqlsYt-~sisE~s~igt~viqilATdsDsn~~isYsl~g~s~~sk~f~In~sTG~it~~g~ldyE~~q 2246 (4289)
T KOG1219|consen 2168 VGDINDNPPVFEQLSYT-ISISENSKIGTKVIQILATDSDSNREISYSLEGNSEISKPFRINVSTGWITVAGKLDYEENQ 2246 (4289)
T ss_pred             ecccCCCCchhheeeEE-EEccCCCccCceEEEEEeccCCCCCceEEEeecCCccccceEEecccceEEEeeecChhhcc
Confidence            68999999999999999 9999999999999999999999 8999999998    4589999999999999999999999


Q ss_pred             eeeEEEEEEEEec--------------------CCCCccceeee-------ecceeEE---ecCCc--------------
Q psy4200          76 TNTSTIVLTLEGV--------------------DPEGSKVKYGI-------YGTDWFS---LDRDS--------------  111 (388)
Q Consensus        76 ~~~~~l~v~a~D~--------------------~P~f~~~~~~~-------~g~~v~~---~D~d~--------------  111 (388)
                      .|.  +.|+|.|.                    +|.|.+..|+.       -|..+..   .|+|+              
T Consensus      2247 ~f~--~fvratdggk~lSseviv~V~VeD~Ndn~Pef~q~~~ea~vsd~a~~g~fit~v~a~D~Dssd~lk~ey~~~~~l 2324 (4289)
T KOG1219|consen 2247 EFR--FFVRATDGGKPLSSEVIVEVHVEDFNDNPPEFNQRNYEAFVSDPARSGHFITVVNAHDLDSSDHLKLEYNSNHFL 2324 (4289)
T ss_pred             eEE--EEEEEccCCCcccccEEEEEEehhcCCCCchhccccceeecCCCccceeEEEEEEeccCCccchhhhhhccccee
Confidence            998  77777762                    28888877775       1222222   33332              


Q ss_pred             -----cEE------------------------------------------------------------------------
Q psy4200         112 -----GEL------------------------------------------------------------------------  114 (388)
Q Consensus       112 -----g~~------------------------------------------------------------------------  114 (388)
                           |.+                                                                        
T Consensus      2325 ~~s~~G~iTlfNl~k~~l~~s~~lrv~vsD~v~~at~~vl~~~~~~n~~~~lveka~l~Tv~~~~~~~~~~f~~~gt~~~ 2404 (4289)
T KOG1219|consen 2325 ILSENGIITLFNLLKSPLQTSYPLRVTVSDGVFRATMEVLFHPHSRNHFSELVEKADLVTVVEHDEQEDADFGAYGTSIY 2404 (4289)
T ss_pred             eeccCceEEehhhcccccccccceeeeeccCcceeeeEEEEEecCcccchhhhhccceeEEEEecCccccccccCCceee
Confidence                 111                                                                        


Q ss_pred             -------------------EEcCCCCcccc-ceEEEEEEEeeCC-CceeEEEEEEEEeecCCCCCeeeCCcceEEEecCC
Q psy4200         115 -------------------RVAQPLYREDG-HHTSKTNVDIRDG-HHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESA  173 (388)
Q Consensus       115 -------------------~~~~~~~~~~~-~~~~~~~v~a~d~-~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~v~E~~  173 (388)
                                         ...+.+++|.- .+...+.+.|.|+ ++.+.++++|.++|+|||+|.|....|+.+|.|++
T Consensus      2405 ~si~s~~sd~~~in~~GqI~t~~kld~e~s~~~vi~i~v~a~Da~gr~af~tvti~ltDiNDnpPqF~a~~Y~~nI~ena 2484 (4289)
T KOG1219|consen 2405 YSINSRASDHFEINKSGQIKTLSKLDREYSEELVIIIAVMAFDAGGRVAFCTVTIILTDINDNPPQFDAQLYRVNITENA 2484 (4289)
T ss_pred             eeechhccCceeECCCccEEeeehhhhccCceEEEEEEEEEecCCCeEEEEEEEEEEEecCCCCccccceeEEEEeeccc
Confidence                               01111111110 0111455667785 68899999999999999999999999999999999


Q ss_pred             CCCcEEEEEEEeeCCCCCCceEEEEEecC--CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCCCCcCC
Q psy4200         174 PIGSVVLRVEAKDGDLAQPRSIYYDLLTN--PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQE  251 (388)
Q Consensus       174 ~~g~~v~~v~A~D~D~~~~~~v~y~l~~~--~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~  251 (388)
                      .-|..|+++.|+|.|.+.|+.++|.+.+.  -..-|.|++ +|.|.+++.|+.+.    +..|.|.|+|.|  +|.|   
T Consensus      2485 skg~~V~~v~A~D~De~snadvty~i~~e~~~~~v~~in~-sG~Itv~~sL~~~e----n~tl~l~vkA~D--~g~P--- 2554 (4289)
T KOG1219|consen 2485 SKGKLVGHVIARDADEGSNADVTYEIVGESDVKHVFEINE-SGVITVKRSLDGLE----NSTLHLFVKAID--DGKP--- 2554 (4289)
T ss_pred             CCCceEEEEEEecCCCCCcccEEEEecCchhhhheeeecC-CceEEeehhhhccc----CcEEEEEEEecc--CCCC---
Confidence            99999999999999999999999999864  345678887 99999999999998    778999999998  7776   


Q ss_pred             CCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC---------------------------
Q psy4200         252 DQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD---------------------------  304 (388)
Q Consensus       252 ~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D---------------------------  304 (388)
                       ++.+..+|.|+|.+..++.|.|..+.|.++|+|+.+.|..|+  ++.|.|.|                           
T Consensus      2555 -~~~s~ttV~v~vl~e~v~lPrFSep~y~fsvpEDv~vG~~Ig--~v~a~~a~~~~i~~~v~~gt~Esn~d~~Fsvdr~T 2631 (4289)
T KOG1219|consen 2555 -RRRSNTTVIVTVLPEDVNLPRFSEPIYTFSVPEDVPVGEEIG--QVSASDADEHVIYSLVLGGTPESNPDLPFSVDRNT 2631 (4289)
T ss_pred             -CcccceEEEEEecCcccCcccccCceEEEeccccCCCCCeee--EEeecccCCceEEEEEeCCCCCCCCCCceEEcCCC
Confidence             778899999999999999999999999999999999999998  88998887                           


Q ss_pred             -------------------eEEEEecCCCceeEEEEEEEEEEEeCCCCCCeeeccceEEEEecCCCCCcEEEEEEEEcCC
Q psy4200         305 -------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD  365 (388)
Q Consensus       305 -------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D  365 (388)
                                         .+.|.. .  ...-+.+.|.|.|.|+|||+|.|..+.|.+.+.||++.|+.|++++|.|.|
T Consensus      2632 G~i~v~ksLD~E~kk~yqi~v~a~~-~--~~vva~tsv~vqVkDvNDNaPvFe~d~y~f~i~En~pvGtsV~qf~AsD~D 2708 (4289)
T KOG1219|consen 2632 GMIKVNKSLDHEKKKSYQIKVKATC-G--QWVVAETSVFVQVKDVNDNAPVFEKDPYLFIIEENSPVGTSVIQFHASDMD 2708 (4289)
T ss_pred             ceEEeccccchhhhceEEEEEEeec-C--CceEEEEEEEEEeecccCCCccccCCceeEEEeccCCCCceEEEEEeeccC
Confidence                               122222 1  114678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEEcC
Q psy4200         366 GGDYGTGGIVYELLGE  381 (388)
Q Consensus       366 ~~~~~~~~i~ysi~~~  381 (388)
                      .+.+|+  |+|||...
T Consensus      2709 s~~nGq--irysl~~~ 2722 (4289)
T KOG1219|consen 2709 SGNNGQ--IRYSLTSP 2722 (4289)
T ss_pred             CCCCce--EEEEEcCC
Confidence            999999  99999976

>KOG1219|consensus

Probab=100.00  E-value=5.8e-52  Score=423.98  Aligned_cols=366  Identities=29%  Similarity=0.458  Sum_probs=318.7

Q ss_pred             CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC---CCeEEEEEec-CCcEEEeCCeeEEEEcccCCCcccce
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYG-TDRFSLDRDSGELRVAQPLDREYNST   76 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~-~~~F~Id~~tG~i~~~~~lD~e~~~~   76 (388)
                      |+|.|||+|+|.+..|. ++|.|+..+|+.|++|.|+|.|   ||.++|+|.. .+.|+||+.||.|.+.++||||....
T Consensus       735 vkd~ndn~p~f~e~sy~-vtvsedtepgs~Ia~vetnd~D~g~NG~v~fsL~n~sdvfsIdp~tGivv~~~sLdrE~q~~  813 (4289)
T KOG1219|consen  735 VKDYNDNTPIFVERSYH-VTVSEDTEPGSFIAHVETNDTDGGNNGMVSFSLLNKSDVFSIDPFTGIVVTSKSLDREGQTS  813 (4289)
T ss_pred             EEecccCCccccccceE-EEEecCCCCCceEEEEEecccCCCCCceEEEEecCCcceEEecCcccEEEeccccCcccCce
Confidence            57999999999999999 9999999999999999999998   6999999997 78999999999999999999999999


Q ss_pred             eeEEEEEEEEecC---------------------CCCccceeee-------ecceeEE---ecCCccE------------
Q psy4200          77 NTSTIVLTLEGVD---------------------PEGSKVKYGI-------YGTDWFS---LDRDSGE------------  113 (388)
Q Consensus        77 ~~~~l~v~a~D~~---------------------P~f~~~~~~~-------~g~~v~~---~D~d~g~------------  113 (388)
                      |.  |.|.|.|.|                     |.|-...+..       .|+.+..   .|+|-|.            
T Consensus       814 y~--l~I~a~dqp~pq~~svv~l~vsvedVndnpPkci~~hsr~kipedlp~gt~~~~l~A~d~diGq~~kvry~l~~~~  891 (4289)
T KOG1219|consen  814 YH--LKIEARDQPPPQLFSVVELDVSVEDVNDNPPKCIIRHSRSKIPEDLPYGTVTWQLVALDPDIGQLGKVRYYLTDDT  891 (4289)
T ss_pred             eE--EEEEEcCCCCCceEEEEEEEEEEeeccCCCCccccccccccCcccCCCceEEEEhhhcCcccCcCceeEEEEecCc
Confidence            99  888888744                     3333222222       4555554   5666542            


Q ss_pred             -----------EEEcCCCCccccceEEEEEEEeeCCC---ceeEEEEEEEEeecCCC--CCeeeCCcceEEEecCCCCCc
Q psy4200         114 -----------LRVAQPLYREDGHHTSKTNVDIRDGH---HTSKTNVDIRVGDVQNT--PPIFINSSFSGEIMESAPIGS  177 (388)
Q Consensus       114 -----------~~~~~~~~~~~~~~~~~~~v~a~d~~---~~~~~~v~V~V~dvNd~--~P~f~~~~~~~~v~E~~~~g~  177 (388)
                                 +.+.+++|++...+. .|.|+|.|++   +++.+.+.|.++|+|.|  ||.|..-.-.++|.||+|.|+
T Consensus       892 v~~rvd~~sGavfi~~~LDf~k~~fy-nLsv~a~d~g~p~lss~chl~Vevldv~enlhpp~F~~~v~e~~V~EnapiGT  970 (4289)
T KOG1219|consen  892 VGERVDFPSGAVFIGKPLDFEKSDFY-NLSVTAVDRGTPILSSICHLEVEVLDVNENLHPPEFISFVTEGHVLENAPIGT  970 (4289)
T ss_pred             cccccccccccEEEecccccccccce-EEEEEEecCCCcceeeeEEEEEEEeccCCCCCCcchheeeeeeeEeecCCcce
Confidence                       345566666654443 7899999976   56788999999999876  999998888899999999999


Q ss_pred             EEEEEEEeeCCCCCCceEEEEEec-CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCCCCcCCCCceE
Q psy4200         178 VVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATA  256 (388)
Q Consensus       178 ~v~~v~A~D~D~~~~~~v~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~  256 (388)
                      .++++.|.|-|.|..+.++|+|.. +..+.|+||..+|.|++.+.||||.    +..|.|+|.|.|  .|.+    ++++
T Consensus       971 ~vi~i~A~dedsgldg~l~Y~I~~gdg~g~FsId~~tG~irTl~~lDrE~----ks~YwltveA~D--~gt~----~~ss 1040 (4289)
T KOG1219|consen  971 IVIRIQARDEDSGLDGELSYKIRTGDGDGIFSIDSTTGSIRTLKALDREK----KSSYWLTVEAKD--LGTV----PLSS 1040 (4289)
T ss_pred             EEEEEEEecCCCCccceEEEEEEcCCcceeEEecCCcceEeechhhchhh----cceEEEEEEEEe--cCCC----cccc
Confidence            999999999999999999999996 5678999999999999999999999    779999999998  5654    6888


Q ss_pred             EEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC--------------------------------
Q psy4200         257 FAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD--------------------------------  304 (388)
Q Consensus       257 ~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D--------------------------------  304 (388)
                      .+.+.|.|+|+|||+|+|.+..|..+|.|+++.+..|  +++.|+|+|                                
T Consensus      1041 v~~vyI~ieDvNDn~Pq~s~pvy~asI~enSp~~vsi--vq~ea~D~Dsssn~kLmykI~sGnyq~FF~Id~~TG~iTt~ 1118 (4289)
T KOG1219|consen 1041 VCEVYIEIEDVNDNVPQFSSPVYYASISENSPETVSI--VQAEANDPDSSSNQKLMYKITSGNYQGFFQIDPETGLITTI 1118 (4289)
T ss_pred             ceeEEEEEEecCCCCcccCCceEeeeeccCCCCceEE--EEeccCCCCcccCcceEEEEccCCccceEEEccccceeeee
Confidence            9999999999999999999999999999999999999  599999999                                


Q ss_pred             ------------eEEEEecCCCceeEEEEEEEEEEEeCCCCCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCce
Q psy4200         305 ------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTG  372 (388)
Q Consensus       305 ------------~v~~~~~~~~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~  372 (388)
                                  |-+...+.|.|.+.+.+.|.|.|+|+|||+|+|.+..|...++|...+  .+.++.|.|.|.|.|++ 
T Consensus      1119 r~LDRE~qdEHiLeVTi~D~gep~l~s~~rviV~IldvNdnsp~Flqk~~~~~v~~r~s~--plyRl~a~d~DeG~nar- 1195 (4289)
T KOG1219|consen 1119 RRLDREKQDEHILEVTIQDNGEPWLCSNQRVIVSILDVNDNSPRFLQKKTFLRVPERSSP--PLYRLAAQDNDEGNNAR- 1195 (4289)
T ss_pred             hhhcccccccceEEEEEecCCCCccccceEEEEEEeeccCCchhhhhheeEEEeeeccCC--ceeEEEEEecCCCcceE-
Confidence                        223334468899999999999999999999999999999999998875  88999999999999988 


Q ss_pred             eEEEEEEcCceeEE
Q psy4200         373 GIVYELLGEYGIMY  386 (388)
Q Consensus       373 ~i~ysi~~~~~~~~  386 (388)
                       |+|+|..+++.|+
T Consensus      1196 -ityniedgde~Fs 1208 (4289)
T KOG1219|consen 1196 -ITYNIEDGDEVFS 1208 (4289)
T ss_pred             -EEEecccCceEEE
Confidence             9999998888743

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.97  E-value=1.2e-28  Score=215.48  Aligned_cols=190  Identities=41%  Similarity=0.650  Sum_probs=168.4

Q ss_pred             CcceEEecCCCCCcEEEEEEEECCCC---CeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec-
Q psy4200          16 NSPLVVEENTPPGTIVSTLEGVDPEG---SKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV-   88 (388)
Q Consensus        16 ~~~~~v~E~~~~gt~v~~v~a~D~D~---~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~-   88 (388)
                      |. +.|+|+++.|+.|+++.|.|+|.   +.++|+|.++   .+|.|++.+|.|++++.||||....|.  |.|.|.|. 
T Consensus         2 ~~-~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~~~~~~--l~v~a~D~g   78 (199)
T cd00031           2 YS-VSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREEQSEYT--LTVVASDGG   78 (199)
T ss_pred             eE-EEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcCCceEE--EEEEEEECC
Confidence            56 89999999999999999999994   6899999974   389999999999999999999999999  88888882 


Q ss_pred             CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEE
Q psy4200          89 DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGE  168 (388)
Q Consensus        89 ~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~  168 (388)
                      .|                                                ..+....++|.|.|+||++|.|....|.+.
T Consensus        79 ~~------------------------------------------------~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~  110 (199)
T cd00031          79 GP------------------------------------------------PLSSTATVTVTVLDVNDNPPVFEQSSYEAS  110 (199)
T ss_pred             cC------------------------------------------------cceeEEEEEEEEccCCCCCCcccccceEEE
Confidence            11                                                123678999999999999999999999999


Q ss_pred             EecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCCC-CceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCCC
Q psy4200         169 IMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPD-EFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGK  247 (388)
Q Consensus       169 v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~~-~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~  247 (388)
                      |.|+.++|+.++++.|+|+|.+.++.++|+|.+... .+|.|++.+|.|++.+.||+|.    ...|.+.|.|+|  .|.
T Consensus       111 v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~i~~~~G~i~~~~~ld~e~----~~~~~l~v~a~D--~~~  184 (199)
T cd00031         111 VPENAPPGTVVGTVTATDADSGENAKLTYSILSGNDKELFSIDPNTGIITLAKPLDREE----KSSYELTVVATD--GGG  184 (199)
T ss_pred             EeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeCCCCCCEEEEeCCceEEEeCCccCCcc----CceEEEEEEEEE--CCC
Confidence            999999999999999999999888899999997544 8999999999999999999999    558999999998  343


Q ss_pred             CcCCCCceEEEEEEEEEcc
Q psy4200         248 PLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       248 ~~~~~~~~~~~~v~I~V~d  266 (388)
                      +    .++.++.+.|.|.|
T Consensus       185 ~----~~~~~~~i~i~v~d  199 (199)
T cd00031         185 P----PLSSTATVTVTVLD  199 (199)
T ss_pred             C----CceeEEEEEEEEEC
Confidence            2    46888888888865

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.89  E-value=3.5e-21  Score=168.14  Aligned_cols=129  Identities=43%  Similarity=0.674  Sum_probs=117.8

Q ss_pred             cceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCCC-CceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEE
Q psy4200         164 SFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPD-EFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRARE  242 (388)
Q Consensus       164 ~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~~-~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D  242 (388)
                      .|.++|.|+.+.|+.++++.|.|+|.+.++.++|+|.++.. .+|.|++.+|.|++.+.||||.    ...|.|.|+|+|
T Consensus         1 ~~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~----~~~~~l~v~a~D   76 (199)
T cd00031           1 SYSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREE----QSEYTLTVVASD   76 (199)
T ss_pred             CeEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcC----CceEEEEEEEEE
Confidence            36789999999999999999999999988899999997543 7999999999999999999999    568999999997


Q ss_pred             ccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200         243 MVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD  304 (388)
Q Consensus       243 ~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D  304 (388)
                        .|.+    .++....+.|.|.|+||++|.|....|.+.|.|+.+.|+.++  ++.|+|+|
T Consensus        77 --~g~~----~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~--~~~a~D~D  130 (199)
T cd00031          77 --GGGP----PLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVG--TVTATDAD  130 (199)
T ss_pred             --CCcC----cceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEE--EEEEEcCC
Confidence              4554    456899999999999999999998899999999999999997  89999999

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.69  E-value=7.9e-16  Score=117.05  Aligned_cols=92  Identities=42%  Similarity=0.610  Sum_probs=82.9

Q ss_pred             ceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCC-CCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEc
Q psy4200         165 FSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNP-DEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREM  243 (388)
Q Consensus       165 ~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~-~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~  243 (388)
                      |.++|+|+.++|+.++++.|.|+|.+.|+.+.|+|.++. ..+|.|++.+|.|++.++||||.    ...|.|.|.|+|.
T Consensus         1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~----~~~y~l~v~a~D~   76 (93)
T PF00028_consen    1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRET----QSSYQLTVRATDS   76 (93)
T ss_dssp             EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTT----TSEEEEEEEEEET
T ss_pred             CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCccc----CCEEEEEEEEEEC
Confidence            788999999999999999999999999999999999744 79999999999999999999999    6689999999983


Q ss_pred             cCCCCcCCCCceEEEEEEEEEc
Q psy4200         244 VDGKPLQEDQATAFAQVTVTIL  265 (388)
Q Consensus       244 ~~g~~~~~~~~~~~~~v~I~V~  265 (388)
                       .|.+    .++++++|.|+|+
T Consensus        77 -~~~~----~~~~~~~V~I~V~   93 (93)
T PF00028_consen   77 -GGSP----PLSSTATVTINVL   93 (93)
T ss_dssp             -TTSS----EEEEEEEEEEEEE
T ss_pred             -CCCC----CCEEEEEEEEEEC
Confidence             1444    6889999999874

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>smart00112 CA Cadherin repeats

Probab=99.58  E-value=2.1e-14  Score=105.61  Aligned_cols=78  Identities=44%  Similarity=0.685  Sum_probs=69.2

Q ss_pred             eeCCCCCCceEEEEEecCCC-CceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEE
Q psy4200         185 KDGDLAQPRSIYYDLLTNPD-EFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVT  263 (388)
Q Consensus       185 ~D~D~~~~~~v~y~l~~~~~-~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~  263 (388)
                      +|+|.|.|+.++|+|.++.. .+|.|++.+|.|.+.++||||.    ...|.|.|+|+|  .|.+    .+++.+.|.|.
T Consensus         1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~----~~~y~l~v~a~D--~~~~----~~~~~~~v~I~   70 (79)
T smart00112        1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREE----QPEYTLTVEATD--GGGP----PLSSTATVTVT   70 (79)
T ss_pred             CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeC----CCeEEEEEEEEE--CCCC----CcccEEEEEEE
Confidence            48899889999999997544 8999999999999999999998    568999999998  4543    57899999999


Q ss_pred             EcccCCCCC
Q psy4200         264 ILDVNDSPP  272 (388)
Q Consensus       264 V~dvNd~~P  272 (388)
                      |.|+|||+|
T Consensus        71 V~D~Nd~~P   79 (79)
T smart00112       71 VLDVNDNAP   79 (79)
T ss_pred             EEECCCCCC
Confidence            999999998

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>KOG1834|consensus

Probab=99.55  E-value=4.1e-13  Score=128.04  Aligned_cols=201  Identities=28%  Similarity=0.430  Sum_probs=149.7

Q ss_pred             CCCCCeeccCCCcceEEecCCCCCcEEE--EEEEECCCC------CeEEEEEecCC-cEE---EeCCee--EEEEcccCC
Q psy4200           5 GNSPPSFTTDVNSPLVVEENTPPGTIVS--TLEGVDPEG------SKVKYGIYGTD-RFS---LDRDSG--ELRVAQPLD   70 (388)
Q Consensus         5 nd~~P~F~~~~~~~~~v~E~~~~gt~v~--~v~a~D~D~------~~i~y~i~~~~-~F~---Id~~tG--~i~~~~~lD   70 (388)
                      |-+-|. ....|. ..|.||-.  +++.  -+.|.|.|.      .-.-|.|.+.+ +|.   +|..||  .|+.+.+||
T Consensus        27 nkhkpw-ie~ey~-gvV~Endn--tvll~Ppl~aLdkdaplr~ageiC~fklhgq~vPFdavVvdK~TGegvlRaK~~lD  102 (952)
T KOG1834|consen   27 NKHKPW-IEEEYH-GVVTENDN--TVLLDPPLAALDKDAPLRYAGEICGFKLHGQPVPFDAVVVDKYTGEGVLRAKEPLD  102 (952)
T ss_pred             cccCcc-ccccee-EEEEeCCc--eEEeCCCeeeecCCCCcccccccceeEecCCCCCceEEEEeccCCceEEeecCccc
Confidence            333443 344688 88999863  3332  356777763      44567777743 454   577765  788899999


Q ss_pred             CcccceeeEEEEEEEEe--cCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEE
Q psy4200          71 REYNSTNTSTIVLTLEG--VDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDI  148 (388)
Q Consensus        71 ~e~~~~~~~~l~v~a~D--~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V  148 (388)
                      .|.+..|+  |+|+|.|  .+|.-++                                           -..+..++++|
T Consensus       103 Celqkeyt--f~iQAydCg~gpdgtn-------------------------------------------~kKShkatvhI  137 (952)
T KOG1834|consen  103 CELQKEYT--FTIQAYDCGNGPDGTN-------------------------------------------TKKSHKATVHI  137 (952)
T ss_pred             ccccccce--EEEEEEecCCCCCccc-------------------------------------------cccccceEEEE
Confidence            99999999  9999998  2232110                                           12356679999


Q ss_pred             EEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCC-Cce-EEEEEecCCCCceEEeCCeeEEEecccCCccc
Q psy4200         149 RVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQ-PRS-IYYDLLTNPDEFFLIDSNTGELKTAKPLDREI  226 (388)
Q Consensus       149 ~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~-~~~-v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~  226 (388)
                      .|.|+|+.+|+|....|.+.|.|. ++-..|++|.|.|.|-+. +++ ..|.|.. ++-+|.||. .|.|+...+|.|..
T Consensus       138 rVkDvNe~AP~f~ep~Yka~V~EG-K~yd~il~veAiD~DCspq~sqIC~YEI~t-~d~PFaIdn-~G~irnTekLny~k  214 (952)
T KOG1834|consen  138 RVKDVNEFAPVFKEPWYKAHVTEG-KVYDSILRVEAIDKDCSPQYSQICEYEITT-PDVPFAIDN-DGNIRNTEKLNYTK  214 (952)
T ss_pred             EeccccccCchhcccceeeEEecc-eeeeeeEEEEeecCCCCCcccceeEEEecC-CCCceEEcC-CCcccccccccccc
Confidence            999999999999999999999998 566689999999999864 555 4688885 678999974 79999999999988


Q ss_pred             cCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEccc
Q psy4200         227 LGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDV  267 (388)
Q Consensus       227 ~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dv  267 (388)
                          ...|.|+|.|.|+  |..    +....+.|+|+|...
T Consensus       215 ----e~~Y~ltVtAyDC--g~k----raa~d~lV~v~Vkp~  245 (952)
T KOG1834|consen  215 ----EHQYKLTVTAYDC--GKK----RAASDSLVTVHVKPT  245 (952)
T ss_pred             ----ceeEEEEEEEEec--ccc----cccCcceEEEEecCc
Confidence                6789999999984  332    223346777777654

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.52  E-value=1.7e-13  Score=104.19  Aligned_cols=70  Identities=37%  Similarity=0.701  Sum_probs=65.3

Q ss_pred             CcceEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec
Q psy4200          16 NSPLVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV   88 (388)
Q Consensus        16 ~~~~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~   88 (388)
                      |. ++|+|++++|+.|+++.|.|+|   ++.+.|+|.++   .+|.|++.+|.|+++++||||....|.  |.|.|.|.
T Consensus         1 Y~-~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~--l~v~a~D~   76 (93)
T PF00028_consen    1 YS-FSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQSSYQ--LTVRATDS   76 (93)
T ss_dssp             EE-EEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTTSEEE--EEEEEEET
T ss_pred             CE-EEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccCCEEE--EEEEEEEC
Confidence            56 8999999999999999999998   69999999964   589999999999999999999999999  99999983

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>KOG1834|consensus

Probab=99.35  E-value=2.5e-11  Score=116.04  Aligned_cols=149  Identities=23%  Similarity=0.292  Sum_probs=116.1

Q ss_pred             EEEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCC--Cc-eEEEEEecCCCCceE---EeCCe--eEEEe
Q psy4200         147 DIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQ--PR-SIYYDLLTNPDEFFL---IDSNT--GELKT  218 (388)
Q Consensus       147 ~V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~--~~-~v~y~l~~~~~~~F~---id~~t--G~i~~  218 (388)
                      ....--+|-+.|... ..|.+-|.||...-...--+.|-|.|.+.  .+ ..-|.|.+. .-+|.   +|..|  |.|+.
T Consensus        20 ~~~aarankhkpwie-~ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq-~vPFdavVvdK~TGegvlRa   97 (952)
T KOG1834|consen   20 HHHAARANKHKPWIE-EEYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQ-PVPFDAVVVDKYTGEGVLRA   97 (952)
T ss_pred             ccccccccccCcccc-cceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCC-CCCceEEEEeccCCceEEee
Confidence            445566787888776 88999999996544444458888988753  12 456788753 34555   47766  57888


Q ss_pred             cccCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEE
Q psy4200         219 AKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDM  298 (388)
Q Consensus       219 ~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l  298 (388)
                      +.+||.|.    +..|+|+|+|.|+..|..+.....+..++|.|.|.|+|+.+|.|....|.+.|.|+.-....+   ++
T Consensus        98 K~~lDCel----qkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK~yd~il---~v  170 (952)
T KOG1834|consen   98 KEPLDCEL----QKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGKVYDSIL---RV  170 (952)
T ss_pred             cCcccccc----cccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEecceeeeeeE---EE
Confidence            99999998    568999999999765544444467788999999999999999999999999999998777665   89


Q ss_pred             EEeeCC
Q psy4200         299 IVTDSD  304 (388)
Q Consensus       299 ~a~D~D  304 (388)
                      .|.|.|
T Consensus       171 eAiD~D  176 (952)
T KOG1834|consen  171 EAIDKD  176 (952)
T ss_pred             EeecCC
Confidence            999999

>smart00112 CA Cadherin repeats

Probab=99.34  E-value=1e-11  Score=91.25  Aligned_cols=69  Identities=30%  Similarity=0.489  Sum_probs=59.3

Q ss_pred             CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEc
Q psy4200          41 GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVA  117 (388)
Q Consensus        41 ~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~  117 (388)
                      ++.++|+|.++   .+|.|++.+|.|++.++||||....|.  |.|.|.|.+                            
T Consensus         8 n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~--l~v~a~D~~----------------------------   57 (79)
T smart00112        8 NGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYT--LTVEATDGG----------------------------   57 (79)
T ss_pred             CcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEE--EEEEEEECC----------------------------
Confidence            58899999864   689999999999999999999999999  999988821                            


Q ss_pred             CCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCC
Q psy4200         118 QPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPP  158 (388)
Q Consensus       118 ~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P  158 (388)
                                         ...+++.+.|+|.|.|+|||+|
T Consensus        58 -------------------~~~~~~~~~v~I~V~D~Nd~~P   79 (79)
T smart00112       58 -------------------GPPLSSTATVTVTVLDVNDNAP   79 (79)
T ss_pred             -------------------CCCcccEEEEEEEEEECCCCCC
Confidence                               0125677899999999999998

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=97.69  E-value=4.5e-05  Score=55.91  Aligned_cols=66  Identities=27%  Similarity=0.467  Sum_probs=40.8

Q ss_pred             ceEEEecCCCCCcEEEEEEEeeCCCCCC--ceEEEEEec-CCCCceEEeCCeeEEEecccCCccccCCcc
Q psy4200         165 FSGEIMESAPIGSVVLRVEAKDGDLAQP--RSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTN  231 (388)
Q Consensus       165 ~~~~v~E~~~~g~~v~~v~A~D~D~~~~--~~v~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~  231 (388)
                      ...+|+|..+.|+.|+.+ |.|.-....  ....|++.+ ....+|.++..+|.|.++..+|||.+...+
T Consensus         3 i~YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE~LC~~~   71 (84)
T PF08266_consen    3 IRYSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSERIDREELCGQS   71 (84)
T ss_dssp             EEEEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS--SCCCC-TTS
T ss_pred             eEEEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeecCCcceeEecCCceeEEeCCccCHHHHCCCC
Confidence            457899999999999998 445432211  123566654 456899999999999999999999976433

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=97.61  E-value=4.8e-05  Score=55.76  Aligned_cols=59  Identities=27%  Similarity=0.481  Sum_probs=38.8

Q ss_pred             eEEecCCCCCcEEEEEEEECCC-----CCeEEEEEec---CCcEEEeCCeeEEEEcccCCCcccceee
Q psy4200          19 LVVEENTPPGTIVSTLEGVDPE-----GSKVKYGIYG---TDRFSLDRDSGELRVAQPLDREYNSTNT   78 (388)
Q Consensus        19 ~~v~E~~~~gt~v~~v~a~D~D-----~~~i~y~i~~---~~~F~Id~~tG~i~~~~~lD~e~~~~~~   78 (388)
                      ++|+|..+.|+.|+.| |.|..     ...-.|++.+   ..+|.+++.+|.|+++..+|||+.+...
T Consensus         5 YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE~LC~~~   71 (84)
T PF08266_consen    5 YSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSERIDREELCGQS   71 (84)
T ss_dssp             EEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS--SCCCC-TTS
T ss_pred             EEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeecCCcceeEecCCceeEEeCCccCHHHHCCCC
Confidence            7899999999999999 55653     1223455543   4599999999999999999999976543

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.43  E-value=0.00037  Score=51.79  Aligned_cols=76  Identities=14%  Similarity=0.235  Sum_probs=42.1

Q ss_pred             CCCeeccCCCcceEEecCCCCCcEEEEEEEECCCC-CeEEEEEecCCcEEEeCCeeEEEEcccCCCcccceeeEEEEEEE
Q psy4200           7 SPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG-SKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTL   85 (388)
Q Consensus         7 ~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~-~~i~y~i~~~~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a   85 (388)
                      +.|=|.+..|. +.|+.+...|..|++|.-.|..+ ..+.|....+ .|.|.+ .|.|++++++..... ...  +.|.|
T Consensus         2 C~pGF~~~~~~-~~Vp~~l~~g~~lg~V~f~dC~~~~~~~~~ssDp-dF~V~~-DGsVy~~r~v~l~~~-~~~--F~V~a   75 (90)
T PF08758_consen    2 CRPGFSQKKYT-FEVPSNLEAGQPLGKVNFEDCTGRRRVIFESSDP-DFRVLE-DGSVYAKRPVQLSSE-QRS--FTVHA   75 (90)
T ss_dssp             ---B--S-EEE-E----SS-SS--EEE---B--SS---EEEE---S-EEEEET-TTEEEEES--S-SSS--EE--EEEEE
T ss_pred             CcCCcccceEE-EEcCchhhCCcEEEEEEeccCCCCCceEEecCCC-CEEEcC-CCeEEEeeeEecCCC-ceE--EEEEE
Confidence            45889999999 99999999999999999999875 5688876655 999998 799999999877533 235  99999


Q ss_pred             Eec
Q psy4200          86 EGV   88 (388)
Q Consensus        86 ~D~   88 (388)
                      .|.
T Consensus        76 ~D~   78 (90)
T PF08758_consen   76 WDS   78 (90)
T ss_dssp             EET
T ss_pred             ECC
Confidence            993

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=95.96  E-value=0.091  Score=39.04  Aligned_cols=77  Identities=18%  Similarity=0.226  Sum_probs=40.8

Q ss_pred             CCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcccEEE
Q psy4200         156 TPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVIS  235 (388)
Q Consensus       156 ~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~  235 (388)
                      +.|-|.+..|.+.|+.+...|..|++|.-.|-...  ..+.|... +  ..|.|.+ .|.|.+++++.....     .-.
T Consensus         2 C~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~~--~~~~~~ss-D--pdF~V~~-DGsVy~~r~v~l~~~-----~~~   70 (90)
T PF08758_consen    2 CRPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTGR--RRVIFESS-D--PDFRVLE-DGSVYAKRPVQLSSE-----QRS   70 (90)
T ss_dssp             ---B--S-EEEE----SS-SS--EEE---B--SS-----EEEE------SEEEEET-TTEEEEES--S-SSS------EE
T ss_pred             CcCCcccceEEEEcCchhhCCcEEEEEEeccCCCC--CceEEecC-C--CCEEEcC-CCeEEEeeeEecCCC-----ceE
Confidence            46889999999999999999999999999887433  46777764 2  3799964 799999999887542     358


Q ss_pred             EEEEEEEc
Q psy4200         236 LTVRAREM  243 (388)
Q Consensus       236 l~v~a~D~  243 (388)
                      |.|.|.|.
T Consensus        71 F~V~a~D~   78 (90)
T PF08758_consen   71 FTVHAWDS   78 (90)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEECC
Confidence            99999984

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=94.17  E-value=1.1  Score=33.77  Aligned_cols=69  Identities=30%  Similarity=0.526  Sum_probs=49.0

Q ss_pred             EeeCCCCCCceEEEEEecC----CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEE
Q psy4200         184 AKDGDLAQPRSIYYDLLTN----PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQ  259 (388)
Q Consensus       184 A~D~D~~~~~~v~y~l~~~----~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~  259 (388)
                      ..|+| +  ..++|++...    -..|..+++.++.+.-. |.....     +.|.+.|.|+|. .|       .+....
T Consensus        24 F~d~d-~--~~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P~~~~~-----g~~~i~v~a~D~-~g-------~~~~~~   86 (97)
T smart00736       24 FTDAD-G--DTLTYSATLSDGSALPSWLSFDSDTGTLSGT-PTNSDV-----GSLSLKVTATDS-SG-------ASASDT   86 (97)
T ss_pred             eECCC-C--CeEEEEEEeCCCCCCCCeEEEeCCCCEEEEE-CCCCCC-----cEEEEEEEEEEC-CC-------CEEEEE
Confidence            45666 2  3788888631    24699999998887773 444332     369999999973 12       467888


Q ss_pred             EEEEEcccCC
Q psy4200         260 VTVTILDVND  269 (388)
Q Consensus       260 v~I~V~dvNd  269 (388)
                      +.|.|.+.|+
T Consensus        87 f~i~V~~~~~   96 (97)
T smart00736       87 FTITVVNTND   96 (97)
T ss_pred             EEEEEeCCCC
Confidence            9999999886

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=93.63  E-value=1.4  Score=33.23  Aligned_cols=49  Identities=20%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             EEECCCCCeEEEEEec------CCcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200          35 EGVDPEGSKVKYGIYG------TDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG   87 (388)
Q Consensus        35 ~a~D~D~~~i~y~i~~------~~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D   87 (388)
                      ...|+|+..++|++..      +.+.+.|+.++.++=. +...+ ...+.  ++|.|+|
T Consensus        23 tF~d~d~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P~~~~-~g~~~--i~v~a~D   77 (97)
T smart00736       23 TFTDADGDTLTYSATLSDGSALPSWLSFDSDTGTLSGT-PTNSD-VGSLS--LKVTATD   77 (97)
T ss_pred             ceECCCCCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEE-CCCCC-CcEEE--EEEEEEE
Confidence            3578888899999973      3478999988887764 33333 34477  6666666

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=92.98  E-value=1.3  Score=33.36  Aligned_cols=39  Identities=18%  Similarity=0.313  Sum_probs=28.0

Q ss_pred             EEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEEEecCC
Q psy4200         130 KTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESA  173 (388)
Q Consensus       130 ~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~v~E~~  173 (388)
                      .|++.+.||.   ...|+|.|.-.|| +|+.. ..-...+.|+.
T Consensus        60 sFtvtv~DGt---t~~vtItI~GtND-apvi~-~~~~g~v~ED~   98 (99)
T TIGR01965        60 TFTVTSADGT---SQTVTITITGAND-AAVIG-GADTGSVTEDS   98 (99)
T ss_pred             EEEEEEeCCC---eEEEEEEEEccCC-CCEEe-cccceeEecCC
Confidence            5667777773   7789999999997 57665 34456777763

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=92.20  E-value=1.1  Score=33.93  Aligned_cols=87  Identities=24%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             EEEEEeeCCCCCCceEEEEEec--CCCCceEEeCCeeEEEecc--------cCCccccCCcccEEEEEEEEEEccCCCCc
Q psy4200         180 LRVEAKDGDLAQPRSIYYDLLT--NPDEFFLIDSNTGELKTAK--------PLDREILGGTNGVISLTVRAREMVDGKPL  249 (388)
Q Consensus       180 ~~v~A~D~D~~~~~~v~y~l~~--~~~~~F~id~~tG~i~~~~--------~LD~E~~~~~~~~~~l~v~a~D~~~g~~~  249 (388)
                      +++.++|+|.+.  ...+++..  +..+.|.|++ +|.....-        .|....    ...-.|.+.+.   ||.  
T Consensus         2 G~Lt~sD~D~gd--~~~~s~~~~~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge----~~tdsFtvtv~---DGt--   69 (99)
T TIGR01965         2 GQLTISDADAGQ--AHFIAQTDAAGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGE----TLTDTFTVTSA---DGT--   69 (99)
T ss_pred             CceEEeCCCCCC--ceEEecccccCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCC----EEEEEEEEEEe---CCC--
Confidence            468889999875  45555542  4467788876 66554421        122111    33567888888   452  


Q ss_pred             CCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCC
Q psy4200         250 QEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDI  287 (388)
Q Consensus       250 ~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~  287 (388)
                             +..|.|+|...||.| .... .-...+.|+.
T Consensus        70 -------t~~vtItI~GtNDap-vi~~-~~~g~v~ED~   98 (99)
T TIGR01965        70 -------SQTVTITITGANDAA-VIGG-ADTGSVTEDS   98 (99)
T ss_pred             -------eEEEEEEEEccCCCC-EEec-ccceeEecCC
Confidence                   678999999999755 4332 2245666653

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=82.19  E-value=7.7  Score=26.44  Aligned_cols=45  Identities=24%  Similarity=0.300  Sum_probs=26.8

Q ss_pred             CCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEc
Q psy4200         191 QPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREM  243 (388)
Q Consensus       191 ~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~  243 (388)
                      .+-..+|+|.+-...+..+...+-.+      .+-.++  .+.|+|.|+|.|.
T Consensus         6 ~~~~Y~Y~l~g~d~~W~~~~~~~~~~------~~~~L~--~G~Y~l~V~a~~~   50 (66)
T PF07495_consen    6 ENIRYRYRLEGFDDEWITLGSYSNSI------SYTNLP--PGKYTLEVRAKDN   50 (66)
T ss_dssp             TTEEEEEEEETTESSEEEESSTS-EE------EEES----SEEEEEEEEEEET
T ss_pred             CceEEEEEEECCCCeEEECCCCcEEE------EEEeCC--CEEEEEEEEEECC
Confidence            34467788876555666664332222      222333  5789999999985

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	388
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		2e-12
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		6e-06
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		7e-12
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		5e-06
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		1e-11
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		6e-06
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		5e-11
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		3e-05
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		1e-08
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		1e-04
1edh_A	226	E-Cadherin Domains 1 And 2 In Complex With Calcium		2e-07
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		1e-06
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		3e-06
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		4e-06
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		1e-05
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		9e-06
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		4e-05
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		5e-05
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		5e-05
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		3e-04
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		5e-05
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		6e-05
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		4e-04
1ff5_A	219	Structure Of E-Cadherin Double Domain Length = 219		7e-05
3ppe_A	203	Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng		1e-04
1l3w_A	546	C-Cadherin Ectodomain Length = 546		1e-04
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		1e-04
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		2e-04
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		2e-04
3q2l_A	213	Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213		7e-04

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 16/192 (8%)
Query: 82  VLTLEGVDPEGSKVKYGIYGTD---WFSLDRDSGELRVAQPLYRE-DGHHTSKTNVDIRD 137
           V  L   D +   + +G+ G +   +F+++ D+G + + QPL RE     T + +V    
Sbjct: 29  VTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQ 88
Query: 138 GHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYY 197
           G  T K N  I+VGDV +  P F N  +S  I E+ P+G+ +  V A D DL    S+ Y
Sbjct: 89  GVITRKVN--IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 146
Query: 198 DLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257
                P  FF IDS  G +   + LD E+         LTV A +    +PL     +  
Sbjct: 147 S-FQPPSPFFAIDSARGIVTVIQELDYEVTQA----YQLTVNATDQDKTRPL-----STL 196
Query: 258 AQVTVTILDVND 269
           A + + I D+ D
Sbjct: 197 ANLAIIITDMQD 208

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 155 NTPPIFINSSFSGEIM--ESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSN 212
           N  P F N  F   ++  E  P+GS V ++ A+D D      ++         FF ++ +
Sbjct: 3   NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD--NDPLVFGVSGEEASRFFAVEPD 60
Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
           TG +   +PLDRE                E      + + Q     +V + + DVND+ P
Sbjct: 61  TGVVWLRQPLDRET-------------KSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAP 107
Query: 273 VFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
            F+ + Y V IPE+ P G+  P   +  TD DL
Sbjct: 108 TFHNQPYSVRIPENTPVGT--PIFIVNATDPDL 138

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 82  VLTLEGVDPEGSKVKYGIYGTD---WFSLDRDSGELRVAQPLYRE-DGHHTSKTNVDIRD 137
           V  L   D +   + +G+ G +   +F+++ D+G + + QPL RE     T + +V    
Sbjct: 30  VTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQ 89
Query: 138 GHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYY 197
           G  T K N  I+VGDV +  P F N  +S  I E+ P+G+ +  V A D DL    S+ Y
Sbjct: 90  GVITRKVN--IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 198 DLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257
                P  FF IDS  G +   + LD E+         LTV A +    +PL     +  
Sbjct: 148 S-FQPPSPFFAIDSARGIVTVIQELDYEVTQA----YQLTVNATDQDKTRPL-----STL 197
Query: 258 AQVTVTILDV 267
           A + + I D+
Sbjct: 198 ANLAIIITDL 207

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 155 NTPPIFINSSFSGEIM--ESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSN 212
           N  P F N  F   ++  E  P+GS V ++ A+D D      ++         FF ++ +
Sbjct: 4   NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD--NDPLVFGVSGEEASRFFAVEPD 61
Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
           TG +   +PLDRE                E      + + Q     +V + + DVND+ P
Sbjct: 62  TGVVWLRQPLDRET-------------KSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAP 108
Query: 273 VFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
            F+ + Y V IPE+ P G+  P   +  TD DL
Sbjct: 109 TFHNQPYSVRIPENTPVGT--PIFIVNATDPDL 139

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 82  VLTLEGVDPEGSKVKYGIYGTD---WFSLDRDSGELRVAQPLYRE-DGHHTSKTNVDIRD 137
           V  L   D +   + +G+ G +   +F+++ D+G + + QPL RE     T + +V    
Sbjct: 30  VTQLLARDMDNDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQ 89
Query: 138 GHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYY 197
           G  T K N  I+VGDV +  P F N  +S  I E+ P+G+ +  V A D DL    S+ Y
Sbjct: 90  GVITRKVN--IQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 198 DLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257
                P  FF IDS  G +   + LD E+         LTV A +    +PL     +  
Sbjct: 148 S-FQPPSPFFAIDSARGIVTVIQELDYEVTQA----YQLTVNATDQDKTRPL-----STL 197
Query: 258 AQVTVTILDV 267
           A + + I D+
Sbjct: 198 ANLAIIITDL 207

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 155 NTPPIFINSSFSGEIM--ESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSN 212
           N  P F N  F   ++  E  P+GS V ++ A+D D      ++         FF ++ +
Sbjct: 4   NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD--NDPLVFGVPGEEASRFFAVEPD 61
Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
           TG +   +PLDRE                E      + + Q     +V + + DVND+ P
Sbjct: 62  TGVVWLRQPLDRET-------------KSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAP 108
Query: 273 VFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
            F+ + Y V IPE+ P G+  P   +  TD DL
Sbjct: 109 TFHNQPYSVRIPENTPVGT--PIFIVNATDPDL 139

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 82  VLTLEGVDPEGSKVKYGIYGTD---WFSLDRDSGELRVAQPLYRE-DGHHTSKTNVDIRD 137
           V  L   D +   + +G+ G +   +F+++ D+G + + QPL RE     T + +V    
Sbjct: 30  VTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQ 89
Query: 138 GHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYY 197
           G  T K N  I+VG V +  P F N  +S  I E+ P+G+ +  V A D DL    S+ Y
Sbjct: 90  GVITRKVN--IQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 198 DLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257
                P  FF IDS  G +   + LD E+         LTV A +    +PL     +  
Sbjct: 148 S-FQPPSPFFAIDSARGIVTVIQELDYEV----TQAYQLTVNATDQDKTRPL-----STL 197
Query: 258 AQVTVTILDV 267
           A + + I D+
Sbjct: 198 ANLAIIITDL 207

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 155 NTPPIFINSSFSGEIM--ESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSN 212
           N  P F N  F   ++  E  P+GS V ++ A+D D      ++         FF ++ +
Sbjct: 4   NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD--NDPLVFGVSGEEASRFFAVEPD 61
Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
           TG +   +PLDRE                E      + + Q     +V + +  VND+ P
Sbjct: 62  TGVVWLRQPLDRET-------------KSEFTVEFSVSDHQGVITRKVNIQVGGVNDNAP 108
Query: 273 VFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
            F+ + Y V IPE+ P G+  P   +  TD DL
Sbjct: 109 TFHNQPYSVRIPENTPVGT--PIFIVNATDPDL 139

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 25/222 (11%)
Query: 75  STNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVD 134
           +T  + I  T+   DPE       +   + F+++RD+G + V       + + T    V 
Sbjct: 140 NTYNAAIAYTIVSQDPE-------LPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQ 192
Query: 135 IRD----GHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVV-LRVEAKDGDL 189
             D    G  T+   V I V D+ +  P+F  S++ G++ E+     +  L+V   D   
Sbjct: 193 AADLQGEGLSTTAKAV-ITVKDINDNAPVFNPSTYQGQVPENEVNARIATLKVTDDDAPN 251
Query: 190 AQPRSIYYDLLTNPDEFFLI----DSNTGELKTAKPLDREILGGTNGVISLTVRAREMVD 245
                  Y ++ +PD+ F++     +N G LKTAK LD E       ++ + V   E   
Sbjct: 252 TPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFE--AKQQYILHVRVENEE--- 306
Query: 246 GKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDI 287
             P +     + A VTV ++DVN++ P+F   E  V +PED 
Sbjct: 307 --PFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPEDF 345

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 85/231 (36%), Gaps = 61/231 (26%)
Query: 207 FLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
           F+I+  TG LK  +PLDRE +     + S  V +       P++         + +T+ D
Sbjct: 51  FIIERETGWLKVTQPLDREAIAKY-ILYSHAVSSNGEAVEDPME---------IVITVTD 100
Query: 267 VNDSPPVFNRKEYVVHIPE-DIPDGSL-----------------------------LPDL 296
            ND+ P F ++ +   + E  +P  S+                             LP  
Sbjct: 101 QNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK 160
Query: 297 DMIVTDSD--------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPS 336
           +M   + D                    LV+       E LS++A  ++ V D+NDN P 
Sbjct: 161 NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPV 220
Query: 337 FELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGIMYV 387
           F  + Y G V E  +    I T+   D D  +      VY ++ +    +V
Sbjct: 221 FNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFV 270

>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 31/187 (16%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
           F ++R++G L+V QPL RE         H  S     + D        + I V D  +  
Sbjct: 53  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 107
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQPRSIYYDLLTNPDEF-----FLI 209
           P F    F G + E A  G+ V++V A D D        +I Y +++   E      F +
Sbjct: 108 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 167
Query: 210 DSNTGELKT-AKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVN 268
           + +TG +      LDRE    +    +L V+A +      LQ +  +  A+  +T+ D+N
Sbjct: 168 NRDTGVISVLTSGLDRE----SYPTYTLVVQAAD------LQGEGLSTTAKAVITVKDIN 217
Query: 269 DSPPVFN 275
           D+ PVFN
Sbjct: 218 DNAPVFN 224

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 119/309 (38%), Gaps = 71/309 (22%)
Query: 6   NSPPSFTTDVNSPL----VVEENTPPGTIVSTLEGVDPE-GSKVKYGIYGTD---RFSLD 57
           + PP F   +N PL    VV+ N PP T V TL+  DP+    + Y I       RF +D
Sbjct: 106 DEPPYF---INRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVD 162
Query: 58  RDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVA 117
             SG +R                                    GTD F LD       + 
Sbjct: 163 ERSGVVRTR----------------------------------GTDLFQLD-------ME 181
Query: 118 QPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGS 177
             LY +      K  VD R    T +  + I  G      P F   S+  EI E+    S
Sbjct: 182 YVLYVKAEDQNGK--VDDRRFQSTPEERLSIVGG---KRAPQFYMPSYEAEIPENQKKDS 236
Query: 178 VVLRVEAKDGDLAQPRSIYYDLLTNPDEF--FLIDSNTGELKTAKPLDREILGGTNGVIS 235
            ++ ++AK       R I Y L         F I   +G +K AK LD E L   + V S
Sbjct: 237 DIISIKAKS---FADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH-VYS 292
Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH-IPEDIPDGSLLP 294
           L V A E   G     D       +T+ + DVND+ P F   +Y  H + EDIP G+ + 
Sbjct: 293 LIVTATEDSGGFSTSVD-------LTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL 345
Query: 295 DLDMIVTDS 303
            +  + +DS
Sbjct: 346 RVKAMDSDS 354

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 306 VIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTG-NVLETAQAGTSITTITALDS 364
           +I   T  +   S+S  L ++VTDVNDN P FEL  Y   NV E    GTSI  + A+DS
Sbjct: 293 LIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDS 352
Query: 365 DGG 367
           D G
Sbjct: 353 DSG 355

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 88  VDPEGSKVKYGIYGTDW---FSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSK- 143
           +DP   K+KY + G      F ++  +G++   + L RE+    + T   +     T+K 
Sbjct: 28  LDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAV--DFETNKP 85
Query: 144 ----TNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQPRSIY 196
               +   I+V D+ +  P F+N  +   + E + +G+ V  V A D D         + 
Sbjct: 86  LEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLV 145
Query: 197 YDLLTNPDEFFLIDSNTGELKTAKP-LDREILGGTNGVISLTVRAREMVDGKPLQEDQAT 255
           Y +L     +F I+  T  +KTA P +DRE          + ++A++M           +
Sbjct: 146 YSILEG-QPYFSIEPETAIIKTALPNMDRE----AKEEYLVVIQAKDMGG----HSGGLS 196
Query: 256 AFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL 293
               +TVT+ DVND+PP F +  Y   +PED+  G+ +
Sbjct: 197 GTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAI 234

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 308 AEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGG 367
           A +  T + L   +  I++V D+NDN P F    Y   V E +  GTS+T +TA D+D  
Sbjct: 77  AVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDP 136
Query: 368 DYG-TGGIVYELL 379
            YG +  +VY +L
Sbjct: 137 VYGNSAKLVYSIL 149

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 313 TAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYG-T 371
           T   L   +  IV+V D+NDN P F    Y  NV E +  GTS+  +TA D+D   YG +
Sbjct: 83  TNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNS 142
Query: 372 GGIVYELL 379
             +VY +L
Sbjct: 143 AKLVYSIL 150

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 312 HTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYG- 370
            T   +   +  I+++ D+NDN P F  + YT  V E A  GT +  +TA D+D   YG 
Sbjct: 81  RTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGN 140
Query: 371 TGGIVYELL 379
           +  +VY +L
Sbjct: 141 SAKVVYSIL 149

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
           +++ V D+NDN P F    + G+V E ++ GT + T+TA+D+D  +   G + Y +L +
Sbjct: 94  IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQ 152

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 23/172 (13%)
Query: 91  EGSKVKYGIYGTDW-----FSLDRDSGELRVAQPLYRED--GHHTSKTNVDIRDGHHTSK 143
           EG+K +    G D      F ++  SG++ V +PL RE    +       D+        
Sbjct: 31  EGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGP 90
Query: 144 TNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRS----IYYDL 199
             +DI V D  +  P+F    + G +ME +P G+ V+R+ A D D   P +    + Y++
Sbjct: 91  VRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDAD--DPSTDNALLRYNI 148
Query: 200 L----TNPD-EFFLIDSNTGELKTAKP---LDREILGGTNGVISLTVRAREM 243
           L    T P    F ID   G++ T      LDRE +        L + A++M
Sbjct: 149 LKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPK--YELVIEAKDM 198

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 179 VLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV 238
           V+R E  +G  A+ R     +  +P   F I+  +G++   +PLDRE +      + +T 
Sbjct: 24  VIRSEGTEG--AKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTD 81
Query: 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDM 298
            + +++DG P++ D         ++++D ND+ P+F    YV H+ E  P G+ +  + M
Sbjct: 82  LSGKIIDG-PVRLD---------ISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTV--MRM 129
Query: 299 IVTDSD 304
              D+D
Sbjct: 130 TAFDAD 135

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
           +++ V D+NDN P F    + G+V E ++ GT + T+TA+D+D  +   G + Y +L +
Sbjct: 94  IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQ 152

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 89  DPEGSKVKYGIYGTDW-------FSLDRDSGELRVAQPLYRED-------GHHTSKTNVD 134
           D EG KV Y I G          F ++R++G L+V +PL RE         H  S     
Sbjct: 29  DKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNA 87
Query: 135 IRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQ 191
           + D        + I V D  +  P F    F G +ME A  G+ V+ V A D D      
Sbjct: 88  VEDPME-----ILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTY 142
Query: 192 PRSIYYDLLTN----PDE-FFLIDSNTGELKTAKP-LDRE 225
             +I Y +L+     PD+  F I+ NTG +      LDRE
Sbjct: 143 NAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDRE 182

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGT--GGIVYELLG 380
           +++ VTD NDN P F    + G+V+E A  GTS+  +TA D+D  D  T    I Y +L 
Sbjct: 94  ILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDAD-DDVNTYNAAIAYTILS 152
Query: 381 E 381
           +
Sbjct: 153 Q 153

>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 105 FSLDRDSGELRVAQPLYRED-------GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP 157
           F ++R++G L+V QPL RE         H  S     + D        + I V D  +  
Sbjct: 52  FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME-----IVITVTDQNDNR 106
Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGD---LAQPRSIYYDLLTNPDEF-----FLI 209
           P F    F G + E A  G+ V++V A D D        +I Y +++   E      F +
Sbjct: 107 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 166
Query: 210 DSNTGELKT-AKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVN 268
           + +TG +      LDRE    +    +L V+A +      LQ +  +  A+  +T+ D+N
Sbjct: 167 NRDTGVISVLTSGLDRE----SYPTYTLVVQAAD------LQGEGLSTTAKAVITVKDIN 216
Query: 269 DS 270
           D+
Sbjct: 217 DN 218

>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 317 LSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
           L   +  I++V+D+NDN P F    + G+V E ++ GTS+T +TA D+D
Sbjct: 84  LEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDAD 132

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 105 FSLDRDSGELRVAQPLYRE--DGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFIN 162
           F ++ ++G + V +PL RE  D +  S   V            + I V D  +  P F  
Sbjct: 57  FRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ 116
Query: 163 SSFSGEIMESAPIGSVVLRVEAKDGD-----LAQPRSIYYDLLTNPDE----FFLIDSNT 213
             F G + E    G+ V+ V A D D     L    S Y  L  +P+E     F I+  T
Sbjct: 117 DVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLS-YSILKQDPEEPIPNLFTINRET 175
Query: 214 GELK-TAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
           G +      LDRE         +LTV+A ++ +G  L     +   +  + I D ND+ P
Sbjct: 176 GVISLIGTGLDREKFPE----YTLTVQATDL-EGAGL-----SVEGKAIIQITDANDNAP 225
Query: 273 VFNRKEYVVHIPED 286
           +F+ K Y   +PE+
Sbjct: 226 IFDPKTYTALVPEN 239

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 323 LIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
           +++ V D+NDN P F    + G+V E ++ GT + T+TA+D+D  +   G + Y ++ +
Sbjct: 94  IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQ 152

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 90  PEGSKVKYGIYGTDW-----FSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTS-- 142
           PEGSK +    G D      F ++ ++G + V + L RE    T +  V+  D    +  
Sbjct: 31  PEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRE-TIATYQLYVETTDASGKTLE 89
Query: 143 -KTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD--LAQPRSIYYDL 199
               +++ V D  +  PIF    + G +ME +P G+ V+R+ A D D        + Y++
Sbjct: 90  GPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNI 149
Query: 200 LTN-PDE----FFLIDSNTGELKTA---KPLDREILGGTNGVISLTVRAREM 243
               PD+     F ID   G++ T      LDRE L   N    L + A++M
Sbjct: 150 RQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETL--ENPKYELIIEAQDM 199

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 21/193 (10%)
Query: 105 FSLDRDSGELRVAQPLYRE--DGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFIN 162
           F ++ ++G + V +PL RE  D +  S   V            + I V D  +  P F  
Sbjct: 206 FRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ 265
Query: 163 SSFSGEIMESAPIGSVVLRVEAKDGD--LAQPRSI--YYDLLTNPDE----FFLIDSNTG 214
             F G + E    G+ V+ V A D D  +     +  Y  L  +P+E     F I+  TG
Sbjct: 266 DVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETG 325
Query: 215 ELK-TAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPV 273
            +      LDRE         +LTV+A ++ +G  L     +   +  + I D ND+ P+
Sbjct: 326 VISLIGTGLDREKFPE----YTLTVQATDL-EGAGL-----SVEGKAIIQITDANDNAPI 375
Query: 274 FNRKEYVVHIPED 286
           F+ K Y   +PE+
Sbjct: 376 FDPKTYTALVPEN 388

>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 105 FSLDRDSGELRVAQPLYRED-GHHTSKTNVDIRDGHHTSK-TNVDIRVGDVQNTPPIFIN 162
           F ++R++G L+V QPL RE    +   ++ D  +G        + I V D  +  P F  
Sbjct: 51  FIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 163 SSFSGEIMESAPIGSVVLRVEAKDGD 188
             F G + E A  G+ V++V A D D
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDAD 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	388
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	5e-46
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	8e-44
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	7e-37
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-20
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-18
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	3e-45
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	4e-39
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	1e-24
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	1e-18
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	2e-44
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	6e-42
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	4e-35
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	8e-21
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	4e-15
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	7e-10
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-43
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-41
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	4e-32
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	7e-24
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	2e-15
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	6e-08
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	1e-43
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	2e-43
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	4e-35
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	5e-30
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	3e-19
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	4e-38
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	3e-34
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	3e-29
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	6e-38
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	4e-32
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	1e-15
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	6e-37
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	1e-34
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	4e-22
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	2e-32
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	9e-28
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	7e-04
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	7e-30
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	5e-25
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	2e-14
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	8e-07
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	4e-26
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	7e-24
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	2e-14
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	8e-07
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	8e-26
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	8e-22
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	4e-15
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	5e-08
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	7e-24
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	1e-22
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	1e-13
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	3e-05
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	3e-23
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	6e-21
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	8e-15
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	8e-05
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	4e-23
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-21
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-13
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	1e-05
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	8e-18
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	5e-10
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	2e-09
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	7e-07
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	1e-17
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	1e-06
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	3e-16
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	7e-06
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	7e-15
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	2e-09
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	6e-08
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	1e-06
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	7e-12
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	8e-05
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	1e-10
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	9e-06
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	2e-10
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	6e-06
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	2e-10
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	2e-07
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	4e-10
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	2e-07
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	9e-10
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	9e-10
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	1e-04
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	3e-06

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  164 bits (418), Expect = 5e-46
 Identities = 86/371 (23%), Positives = 134/371 (36%), Gaps = 83/371 (22%)

Query: 80  TIVLTLEGVDP---EGSKVKYGIYG-------TDWFSLDRDSGELRVAQPLYRE--DGHH 127
                L  +     + +KV Y I G          F ++R++G L+V QPL RE    + 
Sbjct: 16  EFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYI 75

Query: 128 TSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDG 187
                V            + I V D  +  P F    F G + E A  G+ V++V A D 
Sbjct: 76  LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDA 135

Query: 188 DLAQPRS---IYYDLLTN-----PDEFFLIDSNTGELKTAK-PLDREILGGTNGVISLTV 238
           D         I Y +++          F ++ +TG +      LDRE    +    +L V
Sbjct: 136 DDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRE----SYPTYTLVV 191

Query: 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL----P 294
           +A ++  G+ L     +  A+  +T+ D+ND+ PVFN   Y   +PE+  +  +      
Sbjct: 192 QAADL-QGEGL-----STTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNARIATLKVT 245

Query: 295 DLD---------------------MIVTDSD---------------------LVIA---E 309
           D D                     ++VTD                       L +    E
Sbjct: 246 DDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENE 305

Query: 310 ETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDY 369
           E      + S+AT+ V V DVN+  P F        V E    G  IT+ TA + D    
Sbjct: 306 EPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFM- 363

Query: 370 GTGGIVYELLG 380
               I Y +  
Sbjct: 364 -DQKITYRIWR 373

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  158 bits (402), Expect = 8e-44
 Identities = 96/440 (21%), Positives = 152/440 (34%), Gaps = 131/440 (29%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTL------EGVDPEGSKVKYGIY-------GTDRF 54
            P FT +V     V E   PGT V  +      + V+   + + Y I          + F
Sbjct: 105 RPEFTQEVFE-GSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMF 163

Query: 55  SLDRDSGELRVAQ-PLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGE 113
           +++RD+G + V    LDRE    +  T  L ++  D +G                     
Sbjct: 164 TVNRDTGVISVLTSGLDRE----SYPTYTLVVQAADLQG--------------------- 198

Query: 114 LRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESA 173
               + L                    ++     I V D+ +  P+F  S++ G++ E+ 
Sbjct: 199 ----EGL--------------------STTAKAVITVKDINDNAPVFNPSTYQGQVPENE 234

Query: 174 PIGSVVLRVEAKDGDLAQ--PRSIYYDLLTNPDEFFLI----DSNTGELKTAKPLDREIL 227
              + +  ++  D D          Y ++ +PD+ F++     +N G LKTAK LD E  
Sbjct: 235 V-NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFE-- 291

Query: 228 GGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDI 287
                   L VR     + +P +     + A VTV ++DVN+  P+F   E  V +PED 
Sbjct: 292 --AKQQYILHVRVE---NEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDF 345

Query: 288 PDGSLL-------PDLDM-------IVTDSD--LVIAEET-------------------- 311
             G  +       PD  M       I  D+   L I  ET                    
Sbjct: 346 GVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNS 405

Query: 312 -HTAE---------KLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITA 361
            + A            + + TL++ + DVNDN P  E         +          IT 
Sbjct: 406 TYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQ--FCQRNPQPH---IITI 460

Query: 362 LDSDGGDYGTGGIVYELLGE 381
           LD D           EL   
Sbjct: 461 LDPDLPPNT-SPFTAELTHG 479

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  139 bits (353), Expect = 7e-37
 Identities = 65/384 (16%), Positives = 106/384 (27%), Gaps = 104/384 (27%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP-EG----SKVKYGIYG--TDRFSLDRDS 60
            P F         V EN      ++TL+  D         K  Y +      +F +  D 
Sbjct: 218 APVFNPSTYQ-GQVPENEV-NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDP 275

Query: 61  ----GELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRV 116
               G L+ A+ LD E         +L +   + E                         
Sbjct: 276 TTNDGILKTAKGLDFE----AKQQYILHVRVENEEP------------------------ 307

Query: 117 AQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIG 176
                                    S   V + V DV N  PIF+ +    E+ E   +G
Sbjct: 308 ------------------FEGSLVPSTATVTVDVVDV-NEAPIFMPAERRVEVPEDFGVG 348

Query: 177 SVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDRE-ILGGTNGVIS 235
             +    A++ D    + I Y +  +   +  I+  TG + T   +DRE      N    
Sbjct: 349 QEITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYV 408

Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIP------- 288
             + A +  DG P     AT    + + +LDVND+ P+   +          P       
Sbjct: 409 ALIIATD--DGSP----IATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHIITILD 462

Query: 289 -DG---------SLLPDLDM-----IVTDSDLVIAEETHTAEK---------------LS 318
            D           L     +         +   +  +     +                 
Sbjct: 463 PDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKD 522

Query: 319 SSATLIVQVTDVNDNVPSFELNAY 342
              TL V V D    V +     +
Sbjct: 523 QVTTLDVHVCDCEGTVNNCMKAHH 546

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 30/185 (16%)

Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
              E+   G     +     +  +   ++Y +        P   F+I+  TG LK  +PL
Sbjct: 8   SCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPL 66

Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282
           DRE          L   A    +G+ +         ++ +T+ D ND+ P F ++ +   
Sbjct: 67  DRE----AIAKYILYSHAVSS-NGEAV-----EDPMEIVITVTDQNDNRPEFTQEVFEGS 116

Query: 283 IPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATL---IVQVTDVNDNVPSFEL 339
           + E    G+ +  + +  TD+D    ++ +T      +A +   IV       +   F +
Sbjct: 117 VAEGAVPGTSV--MKVSATDAD----DDVNT-----YNAAIAYTIVSQDPELPHKNMFTV 165

Query: 340 NAYTG 344
           N  TG
Sbjct: 166 NRDTG 170

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 40/287 (13%), Positives = 77/287 (26%), Gaps = 74/287 (25%)

Query: 6   NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG---SKVKYGIYGTDR--FSLDRDS 60
           N  P F       + V E+   G  +++    +P+     K+ Y I+        ++ ++
Sbjct: 327 NEAPIFMPAERR-VEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINPET 385

Query: 61  GELRVAQPLDRE-YNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQP 119
           G +     +DRE       ST V  +                        D G       
Sbjct: 386 GAIFTRAEMDREDAEHVKNSTYVALIIA---------------------TDDGS----PI 420

Query: 120 LYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVV 179
                                T    + + + DV +  PI    +   +  +  P   + 
Sbjct: 421 A--------------------TGTGTLLLVLLDVNDNAPIPEPRNM--QFCQRNPQPHI- 457

Query: 180 LRVEAKDGDLAQPRS-IYYDLLTNPDEFFLIDSN--TGELKTAKPLDREILGGTNGVISL 236
             +   D DL    S    +L       + I+ N    E    +P          G   +
Sbjct: 458 --ITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDL----EIGEYKI 511

Query: 237 TVRAREMVD-GKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282
            ++     D     Q         + V + D   +     +  +  H
Sbjct: 512 HLKLA---DNQNKDQV------TTLDVHVCDCEGTVNNCMKAHHHHH 549

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  159 bits (405), Expect = 3e-45
 Identities = 80/417 (19%), Positives = 133/417 (31%), Gaps = 107/417 (25%)

Query: 21  VEENTPPGTIVSTLEGVDPEGSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTST 80
           V     P   +                         + D                T    
Sbjct: 4   VTRAVRPTKRIEFT----------------------EADGD--------------TE-GK 26

Query: 81  IVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYRE--------DGHHTSKTN 132
            V  LE    + +   + I   + +     +G +RV +    E        D        
Sbjct: 27  SVFQLEKETDKET---FKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNM 83

Query: 133 VDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSF--SGEIMESAPIGSVVLRVEAKDGDLA 190
                  +T    V I V DV + PP FIN        +  +AP  + V  ++A+D D  
Sbjct: 84  GHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD-- 141

Query: 191 QPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVD-GKP 248
              +I+Y ++       F +D  +G ++T      +     +    L V+A    D    
Sbjct: 142 TDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQ----LDMEYVLYVKAE---DQNGK 194

Query: 249 LQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDG------------------ 290
           + + +  +  +  ++I+      P F    Y   IPE+                      
Sbjct: 195 VDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRY 253

Query: 291 ------------SLLPDLDMIVTDSDL---VIAEETH-----TAE----KLSSSATLIVQ 326
                       ++ P   ++    +L    + +        TA       S+S  L ++
Sbjct: 254 TLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIR 313

Query: 327 VTDVNDNVPSFELNAYTG-NVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEY 382
           VTDVNDN P FEL  Y   NV E    GTSI  + A+DSD G      I Y +  ++
Sbjct: 314 VTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAE--IEYLVSDDH 368

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  143 bits (363), Expect = 4e-39
 Identities = 68/305 (22%), Positives = 101/305 (33%), Gaps = 65/305 (21%)

Query: 8   PPSFTTDVNSPLV-VEENTPPGTIVSTLEGVDP-EGSKVKYGIY---GTDRFSLDRDSGE 62
           PP F          V+ N PP T V TL+  DP     + Y I       RF +D  SG 
Sbjct: 108 PPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGV 167

Query: 63  LRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYR 122
           +R       +         VL ++                       D       +    
Sbjct: 168 VRTRGTDLFQ----LDMEYVLYVKA---------------------EDQNGKVDDRRF-- 200

Query: 123 EDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRV 182
                              S     + +   +   P F   S+  EI E+    S ++ +
Sbjct: 201 ------------------QSTPEERLSIVGGKR-APQFYMPSYEAEIPENQKKDSDIISI 241

Query: 183 EAKDGDLAQPR-SIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAR 241
           +AK     + R ++           F I   +G +K AK LD E L     V SL V A 
Sbjct: 242 KAKSFADREIRYTLKAQG--QGAGTFNIGPTSGIVKLAKELDFEDL-RQPHVYSLIVTAT 298

Query: 242 EMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH-IPEDIPDGSLLPDLDMIV 300
              +              +T+ + DVND+ P F   +Y  H + EDIP G+ +  L +  
Sbjct: 299 ---EDSGGFSTSVD----LTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSI--LRVKA 349

Query: 301 TDSDL 305
            DSD 
Sbjct: 350 MDSDS 354

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  103 bits (258), Expect = 1e-24
 Identities = 38/258 (14%), Positives = 70/258 (27%), Gaps = 63/258 (24%)

Query: 166 SGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLID--------SNTGEL 216
           S  +  +        R+E  + D        + L      E F I            G +
Sbjct: 1   SRRVTRAVR---PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAV 57

Query: 217 KTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNR 276
           +  K  D E LG    +    +      +       + T   +V + + DVND PP F  
Sbjct: 58  RVKKKWDYEELGPEKTIDFWVIITNMGHNAGI----KYTDNQRVIILVKDVNDEPPYFIN 113

Query: 277 KE--YVVHIPEDIPDGSLL-----PDLD-------------------------MIVTDSD 304
           +       +  + P  + +      D D                         ++ T   
Sbjct: 114 RPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGT 173

Query: 305 L-----------VIAE---ETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETA 350
                       V AE         +  S+    + +       P F + +Y   + E  
Sbjct: 174 DLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQ 232

Query: 351 QAGTSITTITALDSDGGD 368
           +  + I +I A      +
Sbjct: 233 KKDSDIISIKAKSFADRE 250

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 51/267 (19%), Positives = 89/267 (33%), Gaps = 72/267 (26%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIY----GTDRFSLDRDSGEL 63
            P F         + EN    + + +++       +++Y +     G   F++   SG +
Sbjct: 216 APQFYMPSYE-AEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIV 274

Query: 64  RVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYRE 123
           ++A+ LD E                        Y +                        
Sbjct: 275 KLAKELDFEDLR-----------------QPHVYSL------------------------ 293

Query: 124 DGHHTSKTNVDIRDGH--HTSKTNVDIRVGDVQNTPPIFINSSFSG-EIMESAPIGSVVL 180
                    V   +     ++  ++ IRV DV +  P F    +    + E  P+G+ +L
Sbjct: 294 --------IVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL 345

Query: 181 RVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA 240
           RV+A D D      I Y +    D+ F +DS  G +   K LD +     N      V A
Sbjct: 346 RVKAMDSDSGSNAEIEYLVS---DDHFAVDS-NGIIVNNKQLDADNN---NAYYEFIVTA 398

Query: 241 REMVD-GKPLQEDQATAFAQVTVTILD 266
           +   D G+P +   AT    V V   +
Sbjct: 399 K---DKGEPPKSGVAT----VRVYTKN 418

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  160 bits (407), Expect = 2e-44
 Identities = 89/425 (20%), Positives = 134/425 (31%), Gaps = 127/425 (29%)

Query: 21  VEENTPPGTIVSTLEGVDPEGSKVKYGIYG-------TDRFSLDRDSGELRVAQPLDREY 73
             E  P    +  ++      +KV Y I G          F ++ ++G + V +PLDRE 
Sbjct: 17  ENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDRE- 75

Query: 74  NSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNV 133
                   VL+   V   GS V                                      
Sbjct: 76  ---EYDKYVLSSHAVSENGSPV-------------------------------------- 94

Query: 134 DIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPR 193
                       + I V D  +  P F    F G + E    G+ V+ V A D D     
Sbjct: 95  -------EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS 147

Query: 194 S---IYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMV 244
               + Y +L           F I+  TG +      LDRE         +LTV+A ++ 
Sbjct: 148 LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDRE----KFPEYTLTVQATDL- 202

Query: 245 DGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL----PDLDM-- 298
           +G  L     +   +  + I D ND+ P+F+ K Y   +PE+     +      DLDM  
Sbjct: 203 EGAGL-----SVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPG 257

Query: 299 -------------------IVTDSD---------------------LVIA---EETHTAE 315
                              I TD +                     L I     E  +  
Sbjct: 258 TPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVP 317

Query: 316 KLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIV 375
             +S+AT+ V V DVN+  P F       +V E    G  I ++ A D D        + 
Sbjct: 318 LPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQ--IQKLS 374

Query: 376 YELLG 380
           Y +  
Sbjct: 375 YFIGN 379

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  153 bits (389), Expect = 6e-42
 Identities = 86/426 (20%), Positives = 133/426 (31%), Gaps = 129/426 (30%)

Query: 21  VEENTPPGTIVSTL------EGVDPEGSKVKYGIYG-------TDRFSLDRDSGELRVA- 66
           V E   PGT V  +      + +D     + Y I          + F+++R++G + +  
Sbjct: 123 VREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIG 182

Query: 67  QPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGH 126
             LDRE          LT++  D EG                           L      
Sbjct: 183 TGLDRE----KFPEYTLTVQATDLEG-------------------------AGL------ 207

Query: 127 HTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKD 186
                         + +    I++ D  +  PIF   +++  + E+   G  V R+   D
Sbjct: 208 --------------SVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTD 252

Query: 187 GDLAQPRS--IYYDLLTNPDEFFLI----DSNTGELKTAKPLDREILGGTNGVISLTVRA 240
            D+    +    Y +  N   FF I    +SN G L TAK LD E          L +  
Sbjct: 253 LDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFE----LRKQYVLQITV 308

Query: 241 REMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL------- 293
               + +P      T+ A VTVT+ DVN+  P F      V + ED+  G  +       
Sbjct: 309 E---NAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQD 364

Query: 294 PDLDM-------IVTDSD--LVIAEET---HTAEKL------------------------ 317
           PD          I  D    L + ++         L                        
Sbjct: 365 PDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVS 424

Query: 318 --SSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIV 375
             + + TLI+ V DVNDN P      +T               +T  D+D          
Sbjct: 425 VGTGTGTLILHVLDVNDNGPVPSPRVFTMCD-----QNPEPQVLTISDADIPPNT-YPYK 478

Query: 376 YELLGE 381
             L   
Sbjct: 479 VSLSHG 484

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  134 bits (340), Expect = 4e-35
 Identities = 64/378 (16%), Positives = 107/378 (28%), Gaps = 102/378 (26%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP-----EGSKVKYGIYGTDR--FSLDRD- 59
            P F     +  +V EN   G  V  L   D         +  Y I   +   F++  D 
Sbjct: 224 APIFDPKTYT-ALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDP 281

Query: 60  ---SGELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRV 116
               G L  A+ LD E         VL +   + E                         
Sbjct: 282 ESNQGILTTAKGLDFE----LRKQYVLQITVENAEP------------------------ 313

Query: 117 AQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIG 176
                                   TS   V + V DV N  P F+ +    ++ E    G
Sbjct: 314 ------------------FSVPLPTSTATVTVTVEDV-NEAPFFVPAVSRVDVSEDLSRG 354

Query: 177 SVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISL 236
             ++ + A+D D  Q + + Y +  +P  +  ++ + G +     LDRE     N   ++
Sbjct: 355 EKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTV 414

Query: 237 TVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIP-------- 288
            +   +  DG        T    + + +LDVND+ PV + + + +      P        
Sbjct: 415 IMLVTD--DGVS----VGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTISDA 468

Query: 289 DG---------SLLPDLD---MIVTDSDLVIAEETHTAEK----------------LSSS 320
           D          SL    D       DS       + T +                     
Sbjct: 469 DIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQL 528

Query: 321 ATLIVQVTDVNDNVPSFE 338
             +   V          +
Sbjct: 529 TVVNATVCSCEGKAIKCQ 546

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 93.1 bits (232), Expect = 8e-21
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 32/195 (16%)

Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSN 212
             ++         E  P    ++++     +  +   +YY +        P   F I+  
Sbjct: 6   HDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWE 62

Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP 272
           TG +   +PLDRE          L+  A    +G P+         ++T+ ++D ND+ P
Sbjct: 63  TGWMLVTRPLDRE----EYDKYVLSSHAVSE-NGSPV-----EEPMEITINVIDQNDNRP 112

Query: 273 VFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATL---IVQVTD 329
            F +  +   + E +  G+ +  + +  TD D    +   +      +  L   I++   
Sbjct: 113 KFTQDVFRGSVREGVQPGTQV--MAVSATDED----DNIDS-----LNGVLSYSILKQDP 161

Query: 330 VNDNVPSFELNAYTG 344
                  F +N  TG
Sbjct: 162 EEPIPNLFTINRETG 176

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 42/275 (15%), Positives = 70/275 (25%), Gaps = 68/275 (24%)

Query: 6   NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG---SKVKYGIYG--TDRFSLDRDS 60
           N  P F   V+  + V E+   G  + +L   DP+     K+ Y I        ++++D+
Sbjct: 333 NEAPFFVPAVSR-VDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDN 391

Query: 61  GELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPL 120
           G +     LDRE      +T  + +                        D G        
Sbjct: 392 GIVTGNGNLDRESEYVKNNTYTVIMLV---------------------TDDGV----SVG 426

Query: 121 YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVL 180
                               T    + + V DV +  P+     F+       P    VL
Sbjct: 427 --------------------TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP---QVL 463

Query: 181 RVEAKDGDLAQPRSIYYDLLTNPDE-FFLIDSNTGELKTAKPLDREILGGTNGVISLTVR 239
            +   D            L    D  +     + G      P  +       G  S+ V 
Sbjct: 464 TISDADIPPNTYP-YKVSLSHGSDLTWKAELDSKGTSMLLSPTQQL----KKGDYSIYVL 518

Query: 240 AREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
             +       Q         V  T+          
Sbjct: 519 LSDA--QNNPQL------TVVNATVCSCEGKAIKC 545

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 317 LSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVY 376
           LS     I+Q+TD NDN P F+   YT  V E    G  +  ++  D D         VY
Sbjct: 207 LSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVY 265

Query: 377 ELLGEYG 383
           ++    G
Sbjct: 266 KIRVNEG 272

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  161 bits (408), Expect = 1e-43
 Identities = 86/427 (20%), Positives = 133/427 (31%), Gaps = 127/427 (29%)

Query: 19  LVVEENTPPGTIVSTLEGVDPEGSKVKYGIYG-------TDRFSLDRDSGELRVAQPLDR 71
           +   E  P    +  ++      +KV Y I G          F ++ ++G + V +PLDR
Sbjct: 164 VSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDR 223

Query: 72  EYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKT 131
           E         VL+   V   GS V                                    
Sbjct: 224 E----EYDKYVLSSHAVSENGSPV------------------------------------ 243

Query: 132 NVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQ 191
                         + I V D  +  P F    F G + E    G+ V+ V A D D   
Sbjct: 244 ---------EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNI 294

Query: 192 PRS---IYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRARE 242
                 + Y +L           F I+  TG +      LDRE         +LTV+A +
Sbjct: 295 DSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDRE----KFPEYTLTVQATD 350

Query: 243 MVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL------PDL 296
           + +G  L     +   +  + I D ND+ P+F+ K Y   +PE+     +        D+
Sbjct: 351 L-EGAGL-----SVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDM 404

Query: 297 DM-------------------IVTDSD---------------------LVIA---EETHT 313
                                I TD +                     L I     E  +
Sbjct: 405 PGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFS 464

Query: 314 AEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGG 373
               +S+AT+ V V DVN+  P F       +V E    G  I ++ A D D        
Sbjct: 465 VPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQ--IQK 521

Query: 374 IVYELLG 380
           + Y +  
Sbjct: 522 LSYFIGN 528

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  155 bits (393), Expect = 1e-41
 Identities = 75/469 (15%), Positives = 138/469 (29%), Gaps = 123/469 (26%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTL------EGVDPEGSKVKYGIYG-------TDRF 54
            P FT DV     V E   PGT V  +      + +D     + Y I          + F
Sbjct: 260 RPKFTQDVFR-GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLF 318

Query: 55  SLDRDSGELRVA-QPLDREYNS----------------TNTSTIVLTLEGV--------- 88
           +++R++G + +    LDRE                   +     ++ +            
Sbjct: 319 TINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 378

Query: 89  ---------DPEGSKV------------------KYGIYGTD--WFSLDRDS----GELR 115
                    +  G +V                   Y I   +  +F++  D     G L 
Sbjct: 379 KTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILT 438

Query: 116 VAQPLYREDGHHTSKTNVDIRDGH------HTSKTNVDIRVGDVQNTPPIFINSSFSGEI 169
            A+ L  E         + + +         TS   V + V DV N  P F+ +    ++
Sbjct: 439 TAKGLDFELRKQYVLQ-ITVENAEPFSVPLPTSTATVTVTVEDV-NEAPFFVPAVSRVDV 496

Query: 170 MESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGG 229
            E    G  ++ + A+D D  Q + + Y +  +P  +  ++ + G +     LDRE    
Sbjct: 497 SEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYV 556

Query: 230 TNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPD 289
            N   ++ +   +  DG        T    + + +LDVND+ PV + + + +      P 
Sbjct: 557 KNNTYTVIMLVTD--DGVS----VGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ 610

Query: 290 G-----------------SLLPDLD---MIVTDSDLVIA---------EETHT------- 313
                             SL    D       DS              +  ++       
Sbjct: 611 VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSD 670

Query: 314 AEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITAL 362
           A+       +   V          +     G  L              +
Sbjct: 671 AQNNPQLTVVNATVCSCEGKAIKCQEKLVGGFDLPIILVILGSVLALLI 719

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  127 bits (320), Expect = 4e-32
 Identities = 71/441 (16%), Positives = 124/441 (28%), Gaps = 118/441 (26%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP-EGSKVKYGIYGTDRFSLDRDSGELRVA 66
            P F++      V       G  +  +   D        Y + G  RF +  D G + V 
Sbjct: 34  KPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDV-GDSRFRVLPD-GTVLVK 91

Query: 67  QPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGH 126
           + +              T+   D  G K                                
Sbjct: 92  RHVKLH------KDTKFTISTWDARGIKHST----------------------------- 116

Query: 127 HTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIF-------INSSFSGEIMESAPIGSVV 179
           + +  +   R G      +  + V     T           +         E  P    +
Sbjct: 117 NIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRL 176

Query: 180 LRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPLDREILGGTNGVI 234
           +++     +  +   +YY +        P   F I+  TG +   +PLDRE         
Sbjct: 177 VQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDRE----EYDKY 229

Query: 235 SLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLP 294
            L+  A    +G P+         ++T+ ++D ND+ P F +  +   + E +  G+ + 
Sbjct: 230 VLSSHAVSE-NGSPV-----EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQV- 282

Query: 295 DLDMIVTDSD-------------LVIAEETHTAEKL---------------------SSS 320
            + +  TD D             ++  +       L                        
Sbjct: 283 -MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE 341

Query: 321 ATLIVQVTD------------------VNDNVPSFELNAYTGNVLETAQAGTSITTITAL 362
            TL VQ TD                   NDN P F+   YT  V E    G  +  ++  
Sbjct: 342 YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVT 400

Query: 363 DSDGGDYGTGGIVYELLGEYG 383
           D D         VY++    G
Sbjct: 401 DLDMPGTPAWQAVYKIRVNEG 421

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  103 bits (257), Expect = 7e-24
 Identities = 47/313 (15%), Positives = 88/313 (28%), Gaps = 74/313 (23%)

Query: 130 KTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIME-SAPIGSVVLRVEAKDGD 188
           +       G       V     DV    P F ++ +   +       G  + +V   D  
Sbjct: 7   RNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCT 66

Query: 189 LAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILG----------GTNGVISLTV 238
               +   YD+    D  F +  + G +   + +                G     ++ V
Sbjct: 67  --TRKHGLYDV---GDSRFRVLPD-GTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAV 120

Query: 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKE-------YVVHIPEDIPDGS 291
            ++    G+              + +L   ++     RK+         V   E  P   
Sbjct: 121 ASKRHRSGEEAHS------RSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPK 174

Query: 292 LL----PDLDM----------------------IVTDS-DLVIA-----EET-------- 311
            L     + D                       I  ++  +++      EE         
Sbjct: 175 RLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSH 234

Query: 312 ---HTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGD 368
                   +     + + V D NDN P F  + + G+V E  Q GT +  ++A D D   
Sbjct: 235 AVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNI 294

Query: 369 YGT-GGIVYELLG 380
               G + Y +L 
Sbjct: 295 DSLNGVLSYSILK 307

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 43/287 (14%), Positives = 72/287 (25%), Gaps = 70/287 (24%)

Query: 6   NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG---SKVKYGIYG--TDRFSLDRDS 60
           N  P F   V+  + V E+   G  + +L   DP+     K+ Y I        ++++D+
Sbjct: 482 NEAPFFVPAVSR-VDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDN 540

Query: 61  GELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPL 120
           G +     LDRE      +T  + +                     L  D G        
Sbjct: 541 GIVTGNGNLDRESEYVKNNTYTVIM---------------------LVTDDGV----SVG 575

Query: 121 YREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVL 180
                               T    + + V DV +  P+     F+       P      
Sbjct: 576 --------------------TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV---- 611

Query: 181 RVEAKDGDLAQPRS-IYYDLLTNPDE-FFLIDSNTGELKTAKPLDREILGGTNGVISLTV 238
            +   D D+          L    D  +     + G      P  +       G  S+ V
Sbjct: 612 -LTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQL----KKGDYSIYV 666

Query: 239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPE 285
              +       Q         V  T+            K        
Sbjct: 667 LLSDA--QNNPQL------TVVNATVCSCEGKAIKCQEKLVGGFDLP 705

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 58/182 (31%)

Query: 255 TAFAQVTVTILDVNDSPPVFNRKEYVVHIPED---------------------------- 286
                V     DV+   P F+  EY+  +                               
Sbjct: 18  CLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGD 77

Query: 287 -----IPDGSLLP-----------------DLDMIVTDSDLVIAEETHTAEKLSSSATLI 324
                +PDG++L                  D   I   +++ +A + H + + + S +  
Sbjct: 78  SRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSK 137

Query: 325 VQVTDVNDNVPSF-----ELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELL 379
           + V    +          +       V E  + G     +  + S+   +    + Y + 
Sbjct: 138 LPVLTFPETHTGLKRKKRDWVIPPIKVSEN-ERGPFPKRLVQIKSNKDRFNK--VYYSIT 194

Query: 380 GE 381
           G+
Sbjct: 195 GQ 196

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  158 bits (401), Expect = 1e-43
 Identities = 94/428 (21%), Positives = 146/428 (34%), Gaps = 122/428 (28%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTLEGVD---PEG--SKVKYGIY-------GTDRFS 55
            P F   V +   V E + PGT V T+  +D   P      ++Y I          + F+
Sbjct: 105 RPEFLHQVWN-GSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFT 163

Query: 56  LDRDSGELR-VAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGEL 114
           ++ ++G++  VA  LDRE          L ++  D EG+                     
Sbjct: 164 INNETGDIITVAAGLDRE----KVQQYTLIIQATDMEGNP-------------------- 199

Query: 115 RVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAP 174
                                     ++     I V DV + PP F   +F GE+ E+  
Sbjct: 200 ----------------------TYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV 237

Query: 175 IGSVVLRVEAKDGDL---AQPRSIYYDLLTNPDEFFLI----DSNTGELKTAKPLDREIL 227
              +V  +   D D        + Y     +P   F I    +SN G +   KP+D E  
Sbjct: 238 -DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFE-- 294

Query: 228 GGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDI 287
             TN +  LTV A   V      +    + A V+VT++DVN+  P F     ++   E +
Sbjct: 295 --TNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGL 351

Query: 288 PDGSLL-------PDLDM-------IVTDSD--LVIAEET---HTAEKL----------- 317
             G++L       PD  M        ++D    L I        T   L           
Sbjct: 352 HAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNI 411

Query: 318 ---------------SSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITAL 362
                          S + TL + + D+NDN P  ++        ET +  +    ITAL
Sbjct: 412 YNATFLASDNGIPPMSGTGTLQIYLLDINDNAP--QVLPQEAETCETPEPNS--INITAL 467

Query: 363 DSDGGDYG 370
           D D     
Sbjct: 468 DYDIDPNA 475

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  157 bits (400), Expect = 2e-43
 Identities = 90/376 (23%), Positives = 142/376 (37%), Gaps = 87/376 (23%)

Query: 80  TIVLTLEGVDP---EGSKVKYGIYG-------TDWFSLDRDSGELRVAQPLYRE--DGHH 127
                L  +     +   ++Y + G       T  F ++  SG+L V +PL RE     H
Sbjct: 16  PFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH 75

Query: 128 TSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDG 187
                VDI      +  ++ I V D+ +  P F++  ++G + E +  G+ V+ V A D 
Sbjct: 76  LRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDA 135

Query: 188 DLAQPRS----IYYDLLTN-----PDEFFLIDSNTGELKTAK-PLDREILGGTNGVISLT 237
           D   P +    + Y +L+          F I++ TG++ T    LDRE         +L 
Sbjct: 136 D--DPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDRE----KVQQYTLI 189

Query: 238 VRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLP--- 294
           ++A    D +       +  A   +T+ DVND+PP F    +   +PE+  D  +     
Sbjct: 190 IQAT---DMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTV 246

Query: 295 -DLDM----------------------IVTDSD-----LVIAEE-----------THTAE 315
            D D                       I+TD +     + + +            T  AE
Sbjct: 247 TDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAE 306

Query: 316 -----------KLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDS 364
                         S+AT+ V V DVN+N P F  N       E   AGT +TT+TA D 
Sbjct: 307 NQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDP 365

Query: 365 DGGDYGTGGIVYELLG 380
           D        I Y  L 
Sbjct: 366 DRYM--QQNIRYTKLS 379

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  134 bits (340), Expect = 4e-35
 Identities = 69/355 (19%), Positives = 114/355 (32%), Gaps = 80/355 (22%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP-----EGSKVKYGIYGTD---RFSLDRD 59
           PP FT        V EN     IV+ L   D            Y I G D   RF++  D
Sbjct: 220 PPEFTAMTFY-GEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTD 277

Query: 60  S----GELRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELR 115
                G + V +P+D E         VLT+                        +   L 
Sbjct: 278 PNSNDGLVTVVKPIDFE----TNRMFVLTVAA---------------------ENQVPLA 312

Query: 116 VAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPI 175
                                     S   V + V DV N  P F  +       E    
Sbjct: 313 KGIQ------------------HPPQSTATVSVTVIDV-NENPYFAPNPKIIRQEEGLHA 353

Query: 176 GSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVIS 235
           G+++  + A+D D    ++I Y  L++P  +  ID   G++ T   LDRE     N + +
Sbjct: 354 GTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYN 413

Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPD 295
            T  A +  +G P      +    + + +LD+ND+ P            E     S+   
Sbjct: 414 ATFLASD--NGIP----PMSGTGTLQIYLLDINDNAPQVLP--QEAETCETPEPNSIN-- 463

Query: 296 LDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETA 350
             +   D D+         +  +      + ++ V     ++ +N   G+  +  
Sbjct: 464 --ITALDYDI---------DPNAGPFAFDLPLSPVTIK-RNWTINRLNGDFAQLN 506

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  120 bits (302), Expect = 5e-30
 Identities = 54/274 (19%), Positives = 93/274 (33%), Gaps = 77/274 (28%)

Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
            + E++  G     +     D  +  S+ Y +        P   F+I+  +G+L   KPL
Sbjct: 8   NLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66

Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282
           DRE          L   A ++ +G  +          + + ++D+ND+ P F  + +   
Sbjct: 67  DRE----LIARFHLRAHAVDI-NGNQV-----ENPIDIVINVIDMNDNRPEFLHQVWNGS 116

Query: 283 IPE----------------DIPDGS--------------------------------LLP 294
           +PE                D P+                                  +  
Sbjct: 117 VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAA 176

Query: 295 DLD--------MIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNV 346
            LD        +I+  +D+    E +    LS++AT ++ VTDVNDN P F    + G V
Sbjct: 177 GLDREKVQQYTLIIQATDM----EGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEV 232

Query: 347 LETAQAGTSITTITALDSDGGDYGTGGIVYELLG 380
            E       +  +T  D D          Y + G
Sbjct: 233 PENR-VDVIVANLTVTDKDQPHTPAWNAAYRISG 265

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  138 bits (349), Expect = 4e-38
 Identities = 53/298 (17%), Positives = 100/298 (33%), Gaps = 60/298 (20%)

Query: 88  VDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTN-----VDIRDGH--- 139
           ++ E  K  + I   + +     +G +RV +    E+       +      ++       
Sbjct: 26  LEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIK 85

Query: 140 HTSKTNVDIRVGDVQNTPPIFINSS--FSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYY 197
           +T    V I V DV + PP FIN        +  +AP  + V  ++A+D D       Y+
Sbjct: 86  YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD-HNIHYF 144

Query: 198 DLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAF 257
            +       F +D  +G ++T      +     +    L V+A +      + + +  + 
Sbjct: 145 IVRDRTGGRFEVDERSGVVRTRGTDLFQ----LDMEYVLYVKAED--QNGKVDDRRFQST 198

Query: 258 AQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL-----PDLD------MIVTDSDLV 306
            +  ++I+      P F    Y   IPE+    S +                +       
Sbjct: 199 PEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGA 257

Query: 307 ----IAEET---HTAEKL------------------------SSSATLIVQVTDVNDN 333
               I   +     A++L                        S+S  L ++VTDVNDN
Sbjct: 258 GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDN 315

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  127 bits (322), Expect = 3e-34
 Identities = 62/269 (23%), Positives = 88/269 (32%), Gaps = 64/269 (23%)

Query: 8   PPSFTTDVNS-PLVVEENTPPGTIVSTLEGVDP-EGSKVKYGIY---GTDRFSLDRDSGE 62
           PP F         VV+ N PP T V TL+  DP     + Y I       RF +D  SG 
Sbjct: 103 PPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGV 162

Query: 63  LRVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYR 122
           +R       +         VL ++  D                                 
Sbjct: 163 VRTRGTDLFQ----LDMEYVLYVKAED--------------------------------- 185

Query: 123 EDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRV 182
                    N  + D    S     + +   +   P F   S+  EI E+    S ++ +
Sbjct: 186 --------QNGKVDDRRFQSTPEERLSIVGGKR-APQFYMPSYEAEIPENQKKDSDIISI 236

Query: 183 EAKDGDLAQPRSIYYDLL--TNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA 240
           +AK     +   I Y L         F I   +G +K AK LD E L   + V SL V A
Sbjct: 237 KAKSFADRE---IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH-VYSLIVTA 292

Query: 241 REMVDGKPLQEDQATAFAQVTVTILDVND 269
            E  D         +    +T+ + DVND
Sbjct: 293 TE--DSGGF-----STSVDLTIRVTDVND 314

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  114 bits (287), Expect = 3e-29
 Identities = 37/252 (14%), Positives = 71/252 (28%), Gaps = 62/252 (24%)

Query: 172 SAPIGSVVLRVEAKDGDLAQPRSIYYDLLT---------NPDEFFLIDSNTGELKTAKPL 222
           SA       R+E  + D        + L             D  ++     G ++  K  
Sbjct: 1   SAVRP--TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKW 58

Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKE--YV 280
           D E LG    +    +      +       + T   +V + + DVND PP F  +     
Sbjct: 59  DYEELGPEKTIDFWVIITNMGHNAGI----KYTDNQRVIILVKDVNDEPPYFINRPLPMQ 114

Query: 281 VHIPEDIPDGSLLP-----DLD-------------------------MIVTDSDL----- 305
             +  + P  + +      D D                         ++ T         
Sbjct: 115 AVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD 174

Query: 306 ------VIAEETHT---AEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSI 356
                 V AE+ +      +  S+    + +       P F + +Y   + E  +  + I
Sbjct: 175 MEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDI 233

Query: 357 TTITALDSDGGD 368
            +I A      +
Sbjct: 234 ISIKAKSFADRE 245

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  134 bits (340), Expect = 6e-38
 Identities = 64/266 (24%), Positives = 99/266 (37%), Gaps = 66/266 (24%)

Query: 8   PPSFTTDVNSPLV-VEENTPPGTIVSTLEGVDPEGSKVKYGIYGTD---RFSLDRDSGEL 63
            P FT       + + E+TP G+ V+ L   D +   + +G+ G +    F+++ D+G +
Sbjct: 5   LPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVV 64

Query: 64  RVAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYRE 123
            + QPLDRE      S   +                                        
Sbjct: 65  WLRQPLDRE----TKSEFTVEFS------------------------------------- 83

Query: 124 DGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVE 183
                      + D        V+I+VGDV +  P F N  +S  I E+ P+G+ +  V 
Sbjct: 84  -----------VSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVN 132

Query: 184 AKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREM 243
           A D DL    S+ Y     P  FF IDS  G +   + LD E          LTV A + 
Sbjct: 133 ATDPDLGAGGSVLYSFQ-PPSPFFAIDSARGIVTVIQELDYE----VTQAYQLTVNATDQ 187

Query: 244 VDGKPLQEDQATAFAQVTVTILDVND 269
              +PL     +  A + + I D+ D
Sbjct: 188 DKTRPL-----STLANLAIIITDMQD 208

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  119 bits (300), Expect = 4e-32
 Identities = 52/221 (23%), Positives = 78/221 (35%), Gaps = 60/221 (27%)

Query: 157 PPIFINSSFSG--EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNT 213
            P F N  F     I E  P+GS V ++ A+D D      + + +       FF ++ +T
Sbjct: 5   LPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDP---LVFGVSGEEASRFFAVEPDT 61

Query: 214 GELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPV 273
           G +   +PLDRE    T    ++        D       Q     +V + + DVND+ P 
Sbjct: 62  GVVWLRQPLDRE----TKSEFTVEFSVS---DH------QGVITRKVNIQVGDVNDNAPT 108

Query: 274 FNRKEYVVHIPEDIPDG---------------------SLLPDLDMIVTDSD-------- 304
           F+ + Y V IPE+ P G                     S  P       DS         
Sbjct: 109 FHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQ 168

Query: 305 ------------LVIAEETHTAEKLSSSATLIVQVTDVNDN 333
                        V A +      LS+ A L + +TD+ D 
Sbjct: 169 ELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 40/152 (26%)

Query: 268 NDSPPVFNRKEY--VVHIPEDIPDGSLLP-----DLD------MIVTDSDL---VIAEET 311
            +  P F    +   + I ED P GS +      D+D       +  +       +  +T
Sbjct: 2   VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDT 61

Query: 312 ---HTAEKL-------------------SSSATLIVQVTDVNDNVPSFELNAYTGNVLET 349
                 + L                     +  + +QV DVNDN P+F    Y+  + E 
Sbjct: 62  GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPEN 121

Query: 350 AQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
              GT I  + A D D G  G+  ++Y     
Sbjct: 122 TPVGTPIFIVNATDPDLGAGGS--VLYSFQPP 151

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  135 bits (342), Expect = 6e-37
 Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 68/295 (23%)

Query: 20  VVEENTPPGTIVSTLEGVDP-EGS-KVKYGIYGT---DRFSLDRDSGELRVAQPLDREYN 74
           V+EE + P  I+      D   GS K+KY + G      F ++  +G++   + LDRE  
Sbjct: 9   VLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDRE-- 66

Query: 75  STNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVD 134
               +   LT + VD E +K                        PL              
Sbjct: 67  --EKAEYTLTAQAVDFETNK------------------------PL-------------- 86

Query: 135 IRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRS 194
                    +   I+V D+ +  P F+N  +   + E + +G+ V  V A D D     +
Sbjct: 87  ------EPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGN 140

Query: 195 ---IYYDLLTNPDEFFLIDSNTGELKTAKP-LDREILGGTNGVISLTVRAREMVDGKPLQ 250
              + Y +L     +F I+  T  +KTA P +DRE          + ++A++M       
Sbjct: 141 SAKLVYSILEG-QPYFSIEPETAIIKTALPNMDRE----AKEEYLVVIQAKDMGGHSG-- 193

Query: 251 EDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDL 305
               +    +TVT+ DVND+PP F +  Y   +PED+  G+ +    +   D D+
Sbjct: 194 --GLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAI--GRVKANDQDI 244

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  129 bits (326), Expect = 1e-34
 Identities = 57/257 (22%), Positives = 89/257 (34%), Gaps = 59/257 (22%)

Query: 171 ESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGELKTAKPLDREILGG 229
           E +    +++     D D    + I Y L        F I+  TG++   K LDRE    
Sbjct: 12  EFSGPEPILVGRLHTDLD-PGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDRE---- 66

Query: 230 TNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPD 289
                +LT +A +    KPL        ++  + + D+ND+ P F    Y   +PE    
Sbjct: 67  EKAEYTLTAQAVDFETNKPL-----EPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSIL 121

Query: 290 G------------------------SLLPDLDM----------IVTDSDL---VIAEETH 312
           G                        S+L                    ++      E   
Sbjct: 122 GTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLV 181

Query: 313 TAE---------KLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALD 363
             +          LS + TL V +TDVNDN P F  + Y  +V E    GT+I  + A D
Sbjct: 182 VIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKAND 241

Query: 364 SDGGDYGTGGIVYELLG 380
            D G+       Y+++ 
Sbjct: 242 QDIGE--NAQSSYDIID 256

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score = 94.7 bits (236), Expect = 4e-22
 Identities = 55/273 (20%), Positives = 97/273 (35%), Gaps = 70/273 (25%)

Query: 8   PPSFT-TDVNSPLVVEENTPPGTIVSTLEGVDP------EGSKVKYGIY-GTDRFSLDRD 59
            P F     ++   V E +  GT V+ +   D         +K+ Y I  G   FS++ +
Sbjct: 103 APEFLNGPYHAT--VPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPE 160

Query: 60  SGELRVAQP-LDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQ 118
           +  ++ A P +DRE         ++ ++  D                 +   SG L    
Sbjct: 161 TAIIKTALPNMDRE----AKEEYLVVIQAKD-----------------MGGHSGGL---- 195

Query: 119 PLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSV 178
                                 +  T + + + DV + PP F  S +   + E   +G+ 
Sbjct: 196 ----------------------SGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTA 233

Query: 179 VLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLI----DSNTGELKTAKPLDREILGGTNGV 233
           + RV+A D D+ +     YD++  +    F I     +  G ++  KPLD E    T   
Sbjct: 234 IGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFE----TKKS 289

Query: 234 ISLTVRAREMVDGKPLQEDQATAF-AQVTVTIL 265
            +L V A  +      +      F    TV I+
Sbjct: 290 YTLKVEAANI--HIDPRFSSRGPFKDTATVKIV 320

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  121 bits (304), Expect = 2e-32
 Identities = 41/277 (14%), Positives = 71/277 (25%), Gaps = 67/277 (24%)

Query: 21  VEENTPPGTIVSTLEGVDP-----EGSKVKYGIYGT--------DRFSLDRDSGELRVAQ 67
           +  +   GT +  +  +          ++   +YGT        +   +  D+G L + +
Sbjct: 12  LYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQR 71

Query: 68  PLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHH 127
            LD                                       +   +R            
Sbjct: 72  SLDHS-----------------------------------SWEKLSVRNRGFPLLTVYLK 96

Query: 128 TSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPI----------FINSSFSGEIMESAPIGS 177
              +   +R+G         +       + P           F  +  S  I E+ P G+
Sbjct: 97  VFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGT 156

Query: 178 VVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLT 237
                      L    S+ Y LL      F    ++ E+ T   LDRE          L 
Sbjct: 157 FHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDRE----QREKYELV 212

Query: 238 VRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
                   G      +        VT+ D +DS P F
Sbjct: 213 AVCTVH-AGAR----EEVVMVPFPVTVYDEDDSAPEF 244

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  108 bits (272), Expect = 9e-28
 Identities = 40/243 (16%), Positives = 63/243 (25%), Gaps = 64/243 (26%)

Query: 160 FINSSFSGEIMESAPIGSVVLRVEAKDGD--------LAQPRSIYYDLLTNPDEFFLIDS 211
           F   ++  ++      G+ +L V A            L Q     Y    + + +  I  
Sbjct: 3   FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62

Query: 212 NTGELKTAKPLDRE----ILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDV 267
           +TG L   + LD      +     G   LTV  +  +    L+E +        V     
Sbjct: 63  DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122

Query: 268 NDSPPV----------FNRKEYVVHIPEDIPDGSLL-----PDLD--------------- 297
           N S P           F        I E+ P G+       P                  
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182

Query: 298 -----------MIVTDSDL-----------VIAEETHTAEKLSSSATLIVQVTDVNDNVP 335
                       + T   L            +      A +        V V D +D+ P
Sbjct: 183 GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAP 242

Query: 336 SFE 338
            FE
Sbjct: 243 EFE 245

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 337 FELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI 384
           F  +AY   +     AGT +  + AL     +  +  +   L G Y  
Sbjct: 3   FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRT 50

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  113 bits (285), Expect = 7e-30
 Identities = 50/262 (19%), Positives = 94/262 (35%), Gaps = 66/262 (25%)

Query: 20  VVEENTPPGTIVSTLEGVDPEG--SKVKYGIYGTD---RFSLDRDSGELRVAQPLDREYN 74
           V+EE T P  ++      D +     +KY + G      F +D  SG +   + LDRE  
Sbjct: 10  VIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDRE-- 67

Query: 75  STNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVD 134
               +   L                      ++DRD+                       
Sbjct: 68  --ERAQYTLMA-------------------QAVDRDTNRPL------------------- 87

Query: 135 IRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRS 194
                    +   ++V D+ + PP F++  +   + E + +G+ V++V A D D     +
Sbjct: 88  ------EPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGN 141

Query: 195 ---IYYDLLTNPDEFFLIDSNTGELKTAKP-LDREILGGTNGVISLTVRAREMVDGKPLQ 250
              + Y +L     +F +++ TG ++TA P +DRE          + ++A++M       
Sbjct: 142 SAKLVYSILEG-QPYFSVEAQTGIIRTALPNMDRE----AKEEYHVVIQAKDMGGHMGGL 196

Query: 251 EDQATAFAQVTVTILDVNDSPP 272
                    VT+T+ D      
Sbjct: 197 SGTTK----VTITLTDDYKDDD 214

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  100 bits (251), Expect = 5e-25
 Identities = 43/226 (19%), Positives = 73/226 (32%), Gaps = 64/226 (28%)

Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGE 215
              F+       I E      V++     D D +   +I Y L        F+ID  +G 
Sbjct: 6   NQFFV-------IEEYTGPDPVLVGRLHSDID-SGDGNIKYILSGEGAGTIFVIDDKSGN 57

Query: 216 LKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFN 275
           +   K LDRE         +L  +A +    +PL        ++  V + D+ND+PP F 
Sbjct: 58  IHATKTLDRE----ERAQYTLMAQAVDRDTNRPL-----EPPSEFIVKVQDINDNPPEFL 108

Query: 276 RKEYVVHIPEDIPDGSLLP-----DLDM------------IVTDSDL-VIAEET---HTA 314
            + Y  ++PE    G+ +      D D             I+       +  +T    TA
Sbjct: 109 HEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTA 168

Query: 315 EK-------------------------LSSSATLIVQVTDVNDNVP 335
                                      LS +  + + +TD   +  
Sbjct: 169 LPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 306 VIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
             A +  T   L   +  IV+V D+NDN P F    Y  NV E +  GTS+  +TA D+D
Sbjct: 76  AQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDAD 135

Query: 366 GGDYGTGG-IVYELL 379
              YG    +VY +L
Sbjct: 136 DPTYGNSAKLVYSIL 150

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP------EGSKVKYGIY-GTDRFSLDRDS 60
           PP F  ++     V E +  GT V  +   D         +K+ Y I  G   FS++  +
Sbjct: 104 PPEFLHEIYHA-NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQT 162

Query: 61  GELRVAQP-LDREYNSTNTSTIVLTLEGVD 89
           G +R A P +DRE          + ++  D
Sbjct: 163 GIIRTALPNMDRE----AKEEYHVVIQAKD 188

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  103 bits (258), Expect = 4e-26
 Identities = 49/256 (19%), Positives = 96/256 (37%), Gaps = 66/256 (25%)

Query: 20  VVEENTPPGTIVSTLEGVDPEG--SKVKYGIYG---TDRFSLDRDSGELRVAQPLDREYN 74
           ++EE T            D +     +KY + G    D F ++ ++G+++  + LDRE  
Sbjct: 9   LLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDRE-- 66

Query: 75  STNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVD 134
                  +L  + V+    +                        P+              
Sbjct: 67  --EKPVYILRAQAVNRRTGR------------------------PV-------------- 86

Query: 135 IRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRS 194
                   ++   I++ D+ +  PIF    ++  + E A +G+ V++V A D D     +
Sbjct: 87  ------EPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGN 140

Query: 195 ---IYYDLLTNPDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMVDGKPLQ 250
              + Y +L     +F ++S TG +KTA   +DRE          + ++A++M  G  + 
Sbjct: 141 SAKVVYSILQG-QPYFSVESETGIIKTALLNMDRE----NREQYQVVIQAKDM--GGQMG 193

Query: 251 EDQATAFAQVTVTILD 266
               T    V +T+ D
Sbjct: 194 GLSGT--TTVNITLTD 207

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 97.0 bits (242), Expect = 7e-24
 Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 33/199 (16%)

Query: 156 TPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTG 214
               F+       + E        +     D D     S+ Y L      + F+I+ NTG
Sbjct: 4   ANQFFL-------LEEYTGSDYQYVGKLHSDQDRGD-GSLKYILSGDGAGDLFIINENTG 55

Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
           +++  K LDRE       V  L  +A     G+P+        ++  + I D+ND+ P+F
Sbjct: 56  DIQATKRLDRE----EKPVYILRAQAVNRRTGRPV-----EPESEFIIKIHDINDNEPIF 106

Query: 275 NRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNV 334
            +  Y   +PE    G+ +  + +  TD+D              +SA ++  +       
Sbjct: 107 TKDVYTATVPEMADVGTFV--VQVTATDAD---------DPTYGNSAKVVYSILQGQ--- 152

Query: 335 PSFELNAYTGNVLETAQAG 353
           P F + + TG +++TA   
Sbjct: 153 PYFSVESETG-IIKTALLN 170

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 306 VIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
             A    T   +   +  I+++ D+NDN P F  + YT  V E A  GT +  +TA D+D
Sbjct: 75  AQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDAD 134

Query: 366 GGDYGTGG-IVYELL 379
              YG    +VY +L
Sbjct: 135 DPTYGNSAKVVYSIL 149

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP------EGSKVKYGIY-GTDRFSLDRDS 60
            P FT DV +   V E    GT V  +   D         +KV Y I  G   FS++ ++
Sbjct: 103 EPIFTKDVYTA-TVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESET 161

Query: 61  GELRVAQ-PLDREYNSTNTSTIVLTLEGVD 89
           G ++ A   +DRE    N     + ++  D
Sbjct: 162 GIIKTALLNMDRE----NREQYQVVIQAKD 187

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  102 bits (256), Expect = 8e-26
 Identities = 45/260 (17%), Positives = 87/260 (33%), Gaps = 67/260 (25%)

Query: 15  VNSPLVVEEN--TPPGTIVSTLEGVDPEGSKVKYGIYG---TDRFSLDRDSGELRVAQPL 69
           + + + + E   +P    V  L           Y I G      F +    G++   + L
Sbjct: 3   IWNRMHIREEIDSPLPHHVGKLTSSVGNK-NAMYIIEGESANTIFKVQGYDGDIYAFERL 61

Query: 70  DREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTS 129
           DRE      +   LT   +D   +                        + L         
Sbjct: 62  DRE----KKAEYELTAHIIDRRNN------------------------RSL--------- 84

Query: 130 KTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDL 189
                         +   I+V D+ +  PIF+   F+G + E + +G+ V +V A+D D 
Sbjct: 85  -----------EPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADD 133

Query: 190 AQPRS---IYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDG 246
                   + Y ++   +E+F +D +         LDRE    +     + V+A++ +  
Sbjct: 134 PTVAGHATVTYQII-KGNEYFTVDDSGVIFTARADLDRE----SQSAYEIIVKAKDALGL 188

Query: 247 KPLQEDQATAFAQVTVTILD 266
                   ++ A V + + D
Sbjct: 189 TGE-----SSTATVIIRLTD 203

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 91.2 bits (227), Expect = 8e-22
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 16/135 (11%)

Query: 171 ESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGELKTAKPLDREILGG 229
             +P+   V ++ +  G+    ++  Y +   + +  F +    G++   + LDRE    
Sbjct: 13  IDSPLPHHVGKLTSSVGN----KNAMYIIEGESANTIFKVQGYDGDIYAFERLDRE---- 64

Query: 230 TNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPD 289
                 LT    +  + + L        ++  + + D+ND+ P+F +K +   +PE    
Sbjct: 65  KKAEYELTAHIIDRRNNRSL-----EPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRL 119

Query: 290 GSLLPDLDMIVTDSD 304
           G+ +    +   D+D
Sbjct: 120 GTSV--TKVTAEDAD 132

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 306 VIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
               +      L   +  I++V+D+NDN P F    + G+V E ++ GTS+T +TA D+D
Sbjct: 73  AHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDAD 132

Query: 366 GGDYGTGG-IVYELLG 380
                    + Y+++ 
Sbjct: 133 DPTVAGHATVTYQIIK 148

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 12/93 (12%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP------EGSKVKYGIY-GTDRFSLDRDS 60
            P F   + +   V E +  GT V+ +   D         + V Y I  G + F++D   
Sbjct: 101 APIFVQKIFNG-SVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEYFTVDDSG 159

Query: 61  GELRVAQPLDREYNSTNTSTIVLTLEGVDPEGS 93
                   LDRE    + S   + ++  D  G 
Sbjct: 160 VIFTARADLDRE----SQSAYEIIVKAKDALGL 188

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 97.4 bits (243), Expect = 7e-24
 Identities = 57/270 (21%), Positives = 99/270 (36%), Gaps = 75/270 (27%)

Query: 15  VNSPLVVEENTPPGTIVSTLEGVDP---EGSKVKYGIYG-------TDRFSLDRDSGELR 64
           V  P+ + EN+  G     L  +     +   ++Y + G       T  F ++  SG+L 
Sbjct: 3   VIPPINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLS 61

Query: 65  VAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYRED 124
           V +PLDRE      +   L    VD  G++V                             
Sbjct: 62  VTKPLDRE----LIARFHLRAHAVDINGNQV----------------------------- 88

Query: 125 GHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEA 184
                            +  ++ I V D+ +  P F++  ++G + E +  G+ V+ V A
Sbjct: 89  ----------------ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTA 132

Query: 185 KDGDLAQPR--SIYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISL 236
            D D        + Y +L+          F I++ TG++ T    LDRE         +L
Sbjct: 133 IDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDRE----KVQQYTL 188

Query: 237 TVRAREMVDGKPLQEDQATAFAQVTVTILD 266
            ++A +M +G P      T  A   +T+ D
Sbjct: 189 IIQATDM-EGNPTYGLSNT--ATAVITVTD 215

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 93.6 bits (233), Expect = 1e-22
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 34/201 (16%)

Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
            + E++  G     +     D  +  S+ Y +        P   F+I+  +G+L   KPL
Sbjct: 8   NLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66

Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282
           DRE          L   A ++ +G  +          + + ++D+ND+ P F  + +   
Sbjct: 67  DRE----LIARFHLRAHAVDI-NGNQV-----ENPIDIVINVIDMNDNRPEFLHQVWNGS 116

Query: 283 IPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAY 342
           +PE    G+ +  + +   D+D    +       L      I+       +   F +N  
Sbjct: 117 VPEGSKPGTYV--MTVTAIDAD----DPNALNGMLRYR---ILSQAPSTPSPNMFTINNE 167

Query: 343 TGNVLETAQAGTSITTITALD 363
           TG++         IT    LD
Sbjct: 168 TGDI---------ITVAAGLD 179

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 21/76 (27%), Positives = 39/76 (51%)

Query: 305 LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDS 364
           L          ++ +   +++ V D+NDN P F    + G+V E ++ GT + T+TA+D+
Sbjct: 76  LRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDA 135

Query: 365 DGGDYGTGGIVYELLG 380
           D  +   G + Y +L 
Sbjct: 136 DDPNALNGMLRYRILS 151

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 18/98 (18%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTLEGVD---PEG--SKVKYGI-------YGTDRFS 55
            P F   V +   V E + PGT V T+  +D   P      ++Y I          + F+
Sbjct: 105 RPEFLHQVWNG-SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFT 163

Query: 56  LDRDSGELR-VAQPLDREYNSTNTSTIVLTLEGVDPEG 92
           ++ ++G++  VA  LDRE          L ++  D EG
Sbjct: 164 INNETGDIITVAAGLDRE----KVQQYTLIIQATDMEG 197

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 95.5 bits (238), Expect = 3e-23
 Identities = 49/219 (22%), Positives = 78/219 (35%), Gaps = 30/219 (13%)

Query: 163 SSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGELKTAKP 221
           S       +  P    V +V   D        +    +  +P   F I+ NTG +   + 
Sbjct: 6   SPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT 65

Query: 222 LDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVV 281
           LDRE    T     L V   +   GK L          + V ++D ND+ P+F    Y+ 
Sbjct: 66  LDRE----TIATYQLYVETTDA-SGKTL-----EGPVPLEVIVIDQNDNRPIFREGPYIG 115

Query: 282 HIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNA 341
           H+ E  P G+ +  + M   D+D    +       L  +   I Q T    +   F ++ 
Sbjct: 116 HVMEGSPTGTTV--MRMTAFDAD----DPATDNALLRYN---IRQQTPDKPSPNMFYIDP 166

Query: 342 YTGNVL----------ETAQAGTSITTITALDSDGGDYG 370
             G+++          ET +       I A D  G D G
Sbjct: 167 EKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVG 205

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 89.4 bits (222), Expect = 6e-21
 Identities = 57/271 (21%), Positives = 92/271 (33%), Gaps = 75/271 (27%)

Query: 15  VNSPLVVEEN--TPPGTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRV 65
           V SP+++ EN   P    V  +   D      K+ + G          F ++ ++G + V
Sbjct: 4   VVSPILIPENQRQPFPRDVGKVVDSDR-PEGSKFRLTGKGVDQDPKGTFRINENTGSVSV 62

Query: 66  AQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDG 125
            + LDRE      +T  L +E  D  G  +                              
Sbjct: 63  TRTLDRE----TIATYQLYVETTDASGKTL------------------------------ 88

Query: 126 HHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAK 185
                               +++ V D  +  PIF    + G +ME +P G+ V+R+ A 
Sbjct: 89  ---------------EGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAF 133

Query: 186 DGDLAQPR--SIYYDLLTN-----PDEFFLIDSNTGELKTAKP---LDREILGGTNGVIS 235
           D D        + Y++            F ID   G++ T      LDRE L   N    
Sbjct: 134 DADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETL--ENPKYE 191

Query: 236 LTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
           L + A++M       +   T  A  T+ I D
Sbjct: 192 LIIEAQDM----AGLDVGLTGTATATIVIDD 218

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 72.0 bits (177), Expect = 8e-15
 Identities = 22/77 (28%), Positives = 35/77 (45%)

Query: 305 LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDS 364
           L +     + + L     L V V D NDN P F    Y G+V+E +  GT++  +TA D+
Sbjct: 76  LYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDA 135

Query: 365 DGGDYGTGGIVYELLGE 381
           D        + Y +  +
Sbjct: 136 DDPATDNALLRYNIRQQ 152

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 16/92 (17%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTLEGVDP-----EGSKVKYGI-------YGTDRFS 55
            P F         V E +P GT V  +   D      + + ++Y I          + F 
Sbjct: 105 RPIFREGPYIG-HVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFY 163

Query: 56  LDRDSGELRVAQP---LDREYNSTNTSTIVLT 84
           +D + G++        LDRE        +++ 
Sbjct: 164 IDPEKGDIVTVVSPALLDRETLENPKYELIIE 195

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 95.1 bits (237), Expect = 4e-23
 Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 31/208 (14%)

Query: 80  TIVLTLEGVDP---EGSKVKYGIYG-------TDWFSLDRDSGELRVAQPLYRE--DGHH 127
                L  +     + +KV Y I G          F ++R++G L+V QPL RE    + 
Sbjct: 16  EFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYI 75

Query: 128 TSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDG 187
                V            + I V D  +  P F    F G + E A  G+ V++V A D 
Sbjct: 76  LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDA 135

Query: 188 DLAQPRS---IYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTV 238
           D         I Y +++          F ++ +TG +      LDRE    +    +L V
Sbjct: 136 DDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRE----SYPTYTLVV 191

Query: 239 RAREMVDGKPLQEDQATAFAQVTVTILD 266
           +A ++  G+ L     +  A+  +T+ D
Sbjct: 192 QAADL-QGEGL-----STTAKAVITVKD 213

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 90.9 bits (226), Expect = 2e-21
 Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 30/185 (16%)

Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
              E+   G     +     +  +   ++Y +        P   F+I+  TG LK  +PL
Sbjct: 8   SCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPL 66

Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH 282
           DRE          L   A    +G+ +         ++ +T+ D ND+ P F ++ +   
Sbjct: 67  DRE----AIAKYILYSHAVSS-NGEAV-----EDPMEIVITVTDQNDNRPEFTQEVFEGS 116

Query: 283 IPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATL---IVQVTDVNDNVPSFEL 339
           + E    G+ +  + +  TD+D          +  + +A +   IV       +   F +
Sbjct: 117 VAEGAVPGTSV--MKVSATDAD---------DDVNTYNAAIAYTIVSQDPELPHKNMFTV 165

Query: 340 NAYTG 344
           N  TG
Sbjct: 166 NRDTG 170

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 317 LSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGT-GGIV 375
           +     +++ VTD NDN P F    + G+V E A  GTS+  ++A D+D         I 
Sbjct: 88  VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147

Query: 376 YELLGE 381
           Y ++ +
Sbjct: 148 YTIVSQ 153

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 15/83 (18%)

Query: 8   PPSFTTDVNSPLVVEENTPPGTIVSTL------EGVDPEGSKVKYGI-------YGTDRF 54
            P FT +V     V E   PGT V  +      + V+   + + Y I          + F
Sbjct: 105 RPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMF 163

Query: 55  SLDRDSGELRVA-QPLDREYNST 76
           +++RD+G + V    LDRE   T
Sbjct: 164 TVNRDTGVISVLTSGLDRESYPT 186

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 77.9 bits (193), Expect = 8e-18
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 15/129 (11%)

Query: 148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPD--- 204
                  +  P F  S +  ++ E++  G+ +L++ A D D+     I Y      +   
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61

Query: 205 EFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVD-GKPLQEDQATAFAQVTVT 263
               +D  +G L     +DRE        +  TV AR   D G+P + D+AT    V + 
Sbjct: 62  RLLRLDETSGWLSVLHRIDRE----EVNQLRFTVMAR---DRGQPPKTDKAT----VVLN 110

Query: 264 ILDVNDSPP 272
           I D ND+ P
Sbjct: 111 IKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 55.9 bits (136), Expect = 5e-10
 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 44/118 (37%)

Query: 262 VTILDVNDSPPVFNRKEYVVHIPEDIPDGSLL-----PDLDM---------IVTDSDLVI 307
            +    ND+ P F +  Y   + E+   G+ +      DLD+             ++ V 
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61

Query: 308 A-------------------EETHTAE-----------KLSSSATLIVQVTDVNDNVP 335
                               EE +                +  AT+++ + D NDNVP
Sbjct: 62  RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 54.4 bits (132), Expect = 2e-09
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 325 VQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYEL 378
              +  NDN P FE + Y  ++ E +  GT I  + A D D G  G   I Y  
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQ--IEYVF 53

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 46.7 bits (112), Expect = 7e-07
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 21 VEENTPPGTIVSTLEGVDP-EGS--KVKYGIYGTDR-----FSLDRDSGELRVAQPLDRE 72
          + EN+ PGT +  L   D   G   +++Y              LD  SG L V   +DRE
Sbjct: 23 LAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDRE 82

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 76.9 bits (190), Expect = 1e-17
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 16/112 (14%)

Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
            + E++  G     +        +  S+ Y +        P   F+I+  +G+L   KPL
Sbjct: 10  NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68

Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF 274
           DRE          L   A ++ +G  +          + + ++D+ND+ P F
Sbjct: 69  DRE----LIARFHLRAHAVDI-NGNQV-----ENPIDIVINVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 15 VNSPLVVEENTPPGTIVSTLEGVDP---EGSKVKYGIYG-------TDRFSLDRDSGELR 64
          V  P+ + EN+  G     L  +     +   ++Y + G       T  F ++  SG+L 
Sbjct: 5  VIPPINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLS 63

Query: 65 VAQPLDRE 72
          V +PLDRE
Sbjct: 64 VTKPLDRE 71

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 22/123 (17%)

Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDS 211
            P+ +         E     + + ++ + D    +   I Y          P   F+ + 
Sbjct: 15  APVAL------REGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNK 67

Query: 212 NTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSP 271
           +TGEL     LDRE          LT  A +   G  ++        ++ + +LD+ND+ 
Sbjct: 68  DTGELNVTSILDRE----ETPFFLLTGYALDA-RGNNVE-----KPLELRIKVLDINDNE 117

Query: 272 PVF 274
           PVF
Sbjct: 118 PVF 120

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 15 VNSPLVVEEN--TPPGTIVSTLEGVDPEG--SKVKYGIYG-------TDRFSLDRDSGEL 63
          + +P+ + E         ++ +     E    K+ Y   G          F  ++D+GEL
Sbjct: 13 ITAPVALREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGEL 72

Query: 64 RVAQPLDRE 72
           V   LDRE
Sbjct: 73 NVTSILDRE 81

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 69.4 bits (171), Expect = 7e-15
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 16/125 (12%)

Query: 148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDE-- 205
                  +  P+F        I E+AP+G+ V+++ A D D+     I Y          
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61

Query: 206 --FFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVT 263
              F +++ TG +   + LDRE       +  +TV A    DG         A A VT+ 
Sbjct: 62  KRLFALNNTTGLITVQRSLDRE----ETAIHKVTVLAS---DGSST-----PARATVTIN 109

Query: 264 ILDVN 268
           + DVN
Sbjct: 110 VTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 54.0 bits (131), Expect = 2e-09
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 325 VQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYEL 378
              +  NDN P F+      ++ E A  GTS+  + A D+D G      I Y  
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAE--IRYIF 53

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 49.8 bits (120), Expect = 6e-08
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 262 VTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD 304
            +    ND+ PVF   +  VHIPE+ P G+ +  + +  TD+D
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSV--IQLHATDAD 42

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 21 VEENTPPGTIVSTLEGVDP-EGS--KVKYGIYG------TDRFSLDRDSGELRVAQPLDR 71
          + EN P GT V  L   D   GS  +++Y             F+L+  +G + V + LDR
Sbjct: 23 IPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDR 82

Query: 72 E 72
          E
Sbjct: 83 E 83

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 60.9 bits (148), Expect = 7e-12
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 16/114 (14%)

Query: 158 PIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSN 212
           P+           E+   G     +     +  +   ++Y +      T P   F+I+  
Sbjct: 2   PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60

Query: 213 TGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
           TG LK  +PLDRE         +L   A    +G  ++        ++ +T+ D
Sbjct: 61  TGWLKVTEPLDRE----RIATYTLFSHAVSS-NGNAVE-----DPMEILITVTD 104

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 9  PSFTTDVNSPLVVEENTPP-GTIVSTLEGVDPEGSKVKYGIYGTD-------RFSLDRDS 60
          P  +  +      E    P    +  ++    +  KV Y I G          F ++R++
Sbjct: 2  PLGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERET 61

Query: 61 GELRVAQPLDRE 72
          G L+V +PLDRE
Sbjct: 62 GWLKVTEPLDRE 73

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 17/112 (15%)

Query: 156 TPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTG 214
             PI I         +  P    V +V   D        +    +  +P   F I+ NTG
Sbjct: 5   VSPILI------PENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTG 58

Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
            +   + LDRE    T     L V   +   GK L          + V ++D
Sbjct: 59  SVSVTRTLDRE----TIATYQLYVETTDA-SGKTL-----EGPVPLEVIVID 100

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 15 VNSPLVVEENT--PPGTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRV 65
          V SP+++ EN   P    V  +   D      K+ + G          F ++ ++G + V
Sbjct: 4  VVSPILIPENQRQPFPRDVGKVVDSDRP-EGSKFRLTGKGVDQDPKGTFRINENTGSVSV 62

Query: 66 AQPLDRE 72
           + LDRE
Sbjct: 63 TRTLDRE 69

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 168 EIMESA--PIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDR 224
            I E+   P   +V RV   D        +Y   +   P   F I+ N+GE+   K LDR
Sbjct: 8   SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDR 67

Query: 225 EILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
           E          L V   +  +GK +          + + ++D
Sbjct: 68  E----AIPSYQLQVETTDE-NGKTI-----EGPVDLEILVID 99

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 15 VNSPLVVEENT--PPGTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRV 65
          V   + + EN   P   IV  +   D      K  +YG          F ++ +SGE+ V
Sbjct: 3  VAPSISIPENQRIPFPKIVGRVVVSDRI-PGSKIKLYGKGVDQEPKGIFKINENSGEVSV 61

Query: 66 AQPLDRE 72
           + LDRE
Sbjct: 62 TKALDRE 68

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 16/110 (14%)

Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGEL 216
              F+         E      + +     D D       Y          F ID  TG++
Sbjct: 6   NQFFVLE-------EYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDI 58

Query: 217 KTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
              + LDRE         +L  +A +   G+P+        ++  + I D
Sbjct: 59  HAIQRLDRE----ERSQYTLRAQALDRRTGRPM-----EPESEFIIKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 20 VVEENTPPGTIVSTLEGVDPEG--SKVKYGIYG---TDRFSLDRDSGELRVAQPLDRE 72
          V+EE T    +       D +     +KY + G      F++D  +G++   Q LDRE
Sbjct: 10 VLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDRE 67

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 16/110 (14%)

Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGEL 216
             +F+         E +    +++     D D    +  Y          F I+  TG++
Sbjct: 5   NQMFVLE-------EFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDI 57

Query: 217 KTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
              K LDRE         +LT +A +    KPL        ++  + + D
Sbjct: 58  HAIKRLDRE----EKAEYTLTAQAVDFETNKPL-----EPPSEFIIKVQD 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 16 NSPLVVEENTPPGTIVSTL--EGVDPEGSKVKYGIYG---TDRFSLDRDSGELRVAQPLD 70
          N   V+EE + P  I+       +DP   K+KY + G      F ++  +G++   + LD
Sbjct: 5  NQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLD 64

Query: 71 REYNSTNTSTIVLTLEGVDPEGSK 94
          RE      +   LT + VD E +K
Sbjct: 65 RE----EKAEYTLTAQAVDFETNK 84

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Length = 125

 Score = 55.3 bits (134), Expect = 9e-10
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 17/115 (14%)

Query: 169 IMESAPIGSVVLRVEAKD-----GDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLD 223
           ++E    GS+V  + AKD      +L   R        N  +   ++  +G L   + LD
Sbjct: 17  VLEETDRGSLVGNL-AKDLGLSLRELI-TRGAQILSKGN-KQLLQLEQKSGNLLLKEKLD 73

Query: 224 REILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKE 278
           RE L G+     L     +++   P+Q      F Q  + + DVND  P F   E
Sbjct: 74  REELCGSTNPCILHF---QVLLKSPVQ------FIQGEIQLQDVNDHAPEFMEDE 119

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 54.4 bits (131), Expect = 9e-10
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 168 EIMESA--PIGSVVLRVEAKDGDLAQPRSIYYDLL-TNPDEFFLIDSNTGELKTAKPLDR 224
            I E+   P    V +V   +G       +    +  +P   F I+  +G++   +PLDR
Sbjct: 8   LIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDR 67

Query: 225 EILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
           E          L V   ++  GK +         ++ ++++D
Sbjct: 68  E----AIANYELEVEVTDL-SGKII-----DGPVRLDISVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 15 VNSPLVVEENTPP--GTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRV 65
          + +P+++ EN  P     V  +   +      K+ + G          F ++  SG++ V
Sbjct: 3  LATPILIPENQRPPFPRSVGKVIRSEGT-EGAKFRLSGKGVDQDPKGIFRINEISGDVSV 61

Query: 66 AQPLDREYNSTNTSTIVLTLEGVDPEG 92
           +PLDRE      +   L +E  D  G
Sbjct: 62 TRPLDRE----AIANYELEVEVTDLSG 84

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus} Length = 103

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 19/107 (17%)

Query: 169 IMESAPIGSVVLRVEAKD-----GDLAQPRSIYYDLLTNPDE-FFLIDSNTGELKTAKPL 222
           I E A  G+ V R+ A+D      +L       + + +        ++   G L     +
Sbjct: 9   IPEEAKHGTFVGRI-AQDLGLELTELVPRL---FRVASKDRGDLLEVNLQNGILFVNSRI 64

Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVND 269
           DRE L G +   S+ +   E++  +PLQ         V V + D+ND
Sbjct: 65  DREELCGRSAECSIHL---EVIVDRPLQ------VFHVEVEVRDIND 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	388
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	99.97
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.97
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	99.97
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	99.96
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.94
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	99.93
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	99.92
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	99.92
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	99.92
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.91
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.91
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	99.91
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.89
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.85
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.85
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.81
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.8
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.76
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.76
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.74
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.68
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.68
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.64
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.62
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.62
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.61
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.6
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.6
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.59
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.56
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.56
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.55
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.49
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.37
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	94.98
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	83.49
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	82.46

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=3.4e-57  Score=471.38  Aligned_cols=360  Identities=23%  Similarity=0.303  Sum_probs=233.8

Q ss_pred             CCccCCCCCeeccCCCcceEEe-cCCCCCcEEEEEEEECCC-CCeEEEEEecCCcEEEeCCeeEEEEcccCCCcccceee
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVE-ENTPPGTIVSTLEGVDPE-GSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNT   78 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~-E~~~~gt~v~~v~a~D~D-~~~i~y~i~~~~~F~Id~~tG~i~~~~~lD~e~~~~~~   78 (388)
                      +.|+|||+|.|.+..|. ++|+ |+.++|+.|++|+|+|+| ++.++|++. ...|.|++ +|.|+++++||||..  |.
T Consensus        27 ~~d~ndn~P~F~~~~y~-~~v~~e~~~~Gt~V~~v~a~D~D~n~~i~Y~~~-~~~F~Id~-~G~i~~~~~Ld~e~~--~~  101 (880)
T 1q55_A           27 NADVSGCKPGFSSAEYI-FSVNRRELERGRKLGKVNFSDCTTRKHGLYDVG-DSRFRVLP-DGTVLVKRHVKLHKD--TK  101 (880)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCCCCccCCCeEE-EEechhhCCCCCEEEEEEEEeCCCCceEEEEeC-CCCEEECC-CceEEECCccccccc--eE
Confidence            46899999999999999 9999 999999999999999998 577999985 45999998 899999999999987  55


Q ss_pred             EEEEEEEEec------------------------------CCCCcccee--------------e----------------
Q psy4200          79 STIVLTLEGV------------------------------DPEGSKVKY--------------G----------------   98 (388)
Q Consensus        79 ~~l~v~a~D~------------------------------~P~f~~~~~--------------~----------------   98 (388)
                        |+|.|+|.                              .|.|.+..+              .                
T Consensus       102 --l~V~A~D~~~~~~~~~v~v~~v~~~~~~~~~~~~~~~~~p~f~~~~~~~~r~~r~~~~~~~~v~En~~~~~~~~v~~v  179 (880)
T 1q55_A          102 --FTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQI  179 (880)
T ss_dssp             --------------------------------------------------------CCCCCCEEEESSCCSSSCEEEEEC
T ss_pred             --EEEEEEcCCCCeEEEEEEEEEecccccccccccccccCcccccccccccceeeccccccceEEeCCCCCCCCeEEEEE
Confidence              55555441                              234543211              1                


Q ss_pred             -------------eecc-------eeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCC---ceeEEEEEEEEeecCC
Q psy4200          99 -------------IYGT-------DWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGH---HTSKTNVDIRVGDVQN  155 (388)
Q Consensus        99 -------------~~g~-------~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~---~~~~~~v~V~V~dvNd  155 (388)
                                   +.|.       ..|.+|+.+|.|.+.+++|||... ...|.+.|+|++   +++.+.++|+|.|+||
T Consensus       180 ~~d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~-~y~l~v~A~D~g~~~~~~~~~v~I~V~DvND  258 (880)
T 1q55_A          180 KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYD-KYVLSSHAVSENGSPVEEPMEITINVIDQND  258 (880)
T ss_dssp             CCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCC-EEEEEEEEEESSSCBCSCCEEEEEEEECCSC
T ss_pred             eeCCCCCceEEEEEECCCCCCCcCCEEEEECCcCEEEECCccCccccC-ccEEEEEEEECCCCceeeeEEEEEEEEecCC
Confidence                         1111       268899999999999999999874 347889999964   3567899999999999


Q ss_pred             CCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCC---CCceEEEEEecC-----CCCceEEeCCeeEEEec-ccCCccc
Q psy4200         156 TPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLA---QPRSIYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREI  226 (388)
Q Consensus       156 ~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~---~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~-~~LD~E~  226 (388)
                      |+|+|.+..|..+|.|++++|+.|+++.|+|+|.+   .|+.++|+|.++     ..++|.|++.+|.|++. ++||||.
T Consensus       259 n~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDrE~  338 (880)
T 1q55_A          259 NRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK  338 (880)
T ss_dssp             CCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTT
T ss_pred             CCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecccCCHHH
Confidence            99999999999999999999999999999999998   689999999863     24799999999999995 7899999


Q ss_pred             cCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC--
Q psy4200         227 LGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD--  304 (388)
Q Consensus       227 ~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D--  304 (388)
                          ...|.|.|+|+|.  |.+    .++++++|.|+|.|+|||+|.|....|.+.|+|+ ++|+.|+  ++.|+|+|  
T Consensus       339 ----~~~y~l~V~A~D~--g~~----~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~--~v~A~D~D~~  405 (880)
T 1q55_A          339 ----FPEYTLTVQATDL--EGA----GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQ--RLSVTDLDMP  405 (880)
T ss_dssp             ----CCEEEEEEEEEHH--HHT----SCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEE--EECBCCCSCT
T ss_pred             ----cceeEEEEEEEEC--CCC----CccceeEEEEEEEeccCCCCCccccceEEEeecC-CCCcEEE--EEEEECCCCC
Confidence                5689999999983  333    5799999999999999999999999999999999 9999997  89999988  


Q ss_pred             ------------------------------------------------eEEEEecCC--CceeEEEEEEEEEEEeCCCCC
Q psy4200         305 ------------------------------------------------LVIAEETHT--AEKLSSSATLIVQVTDVNDNV  334 (388)
Q Consensus       305 ------------------------------------------------~v~~~~~~~--~~~~s~~~~v~I~V~dvND~~  334 (388)
                                                                      .|.|.|.++  .+.++++++|+|+|+|+|| +
T Consensus       406 ~g~n~~v~Ysi~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~DvND-~  484 (880)
T 1q55_A          406 GTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-A  484 (880)
T ss_dssp             TSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-C
T ss_pred             CCCCceEEEEEecCCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEeCCC-C
Confidence                                                            122333211  2457899999999999999 9


Q ss_pred             CeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCcee
Q psy4200         335 PSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI  384 (388)
Q Consensus       335 P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~~  384 (388)
                      |+|.++.|.+.|+|+.++|+.|++|.|+|+|.|.+++  ++|+|.++...
T Consensus       485 P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~--v~Ysi~~~~~~  532 (880)
T 1q55_A          485 PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQK--LSYFIGNDPAR  532 (880)
T ss_dssp             CEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCC--EEEEECCCSSC
T ss_pred             CEEecCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCc--EEEEECCCCCC
Confidence            9999999999999999999999999999999999987  99999976443

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=2.3e-55  Score=438.41  Aligned_cols=315  Identities=28%  Similarity=0.433  Sum_probs=278.2

Q ss_pred             CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCCC------CeEEEEEec-------CCcEEEeCCeeEEEE-c
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG------SKVKYGIYG-------TDRFSLDRDSGELRV-A   66 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~------~~i~y~i~~-------~~~F~Id~~tG~i~~-~   66 (388)
                      |.|+|||+|+|.+..|. ++|+|++++|+.|+++.|+|+|.      +.++|+|.+       .+.|.|++.+|.|++ .
T Consensus        98 V~DvNDn~P~F~~~~y~-~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~  176 (550)
T 3q2v_A           98 VTDQNDNRPEFTQEVFE-GSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT  176 (550)
T ss_dssp             EECCSCCCCCBSCSEEE-EEEETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECS
T ss_pred             EEecCCCCCccCCCceE-EEEeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEcc
Confidence            57999999999999999 99999999999999999999983      589999974       248999999999998 5


Q ss_pred             ccCCCcccceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEE
Q psy4200          67 QPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNV  146 (388)
Q Consensus        67 ~~lD~e~~~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v  146 (388)
                      ++||||....|.  |+|.|.|.+                                               ..++++.+.+
T Consensus       177 ~~LDrE~~~~y~--l~V~A~D~g-----------------------------------------------~~~~s~t~~v  207 (550)
T 3q2v_A          177 SGLDRESYPTYT--LVVQAADLQ-----------------------------------------------GEGLSTTAKA  207 (550)
T ss_dssp             SCCCTTTCSEEE--EEEEEESGG-----------------------------------------------GTSCCCEEEE
T ss_pred             CCCCcccCcEEE--EEEEEEcCC-----------------------------------------------CCCeeEEEEE
Confidence            899999999999  888888821                                               1135778899


Q ss_pred             EEEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCc--eEEEEEecCCCCceEEe----CCeeEEEecc
Q psy4200         147 DIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPR--SIYYDLLTNPDEFFLID----SNTGELKTAK  220 (388)
Q Consensus       147 ~V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~--~v~y~l~~~~~~~F~id----~~tG~i~~~~  220 (388)
                      +|.|.|+|||+|+|.+..|..+|.|+ ++|+.|+++.|+|+|.+.++  .++|+|.++..++|.|+    ..+|.|++.+
T Consensus       208 ~I~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~~~~~~F~i~~d~~~~tG~i~~~~  286 (550)
T 3q2v_A          208 VITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAK  286 (550)
T ss_dssp             EEEEECCSCSCCEESSSEEEEEEESS-CSSCCCEEECEECCSCTTSTTTCEEEEESSCSSCCEEEEECTTTCCEEEEESS
T ss_pred             EEEecccCCCCCEEecceeEEEEecC-CCCCEEEEEEEEECCCCCCCcEEEEEEEEeCCCCcEEEEecCCCccEEEEecc
Confidence            99999999999999999999999999 99999999999999999876  46799998778899998    7899999999


Q ss_pred             cCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEE
Q psy4200         221 PLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIV  300 (388)
Q Consensus       221 ~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a  300 (388)
                      +||||.    ...|.|.|+|+|  .| +...+.++++++|.|+|.|+|| +|.|....|.+.|+|++++|+.|+  ++.|
T Consensus       287 ~LD~E~----~~~y~l~V~a~D--~~-~~~~~~~~~~~~v~I~V~DvND-~P~f~~~~~~~~v~E~~~~gt~v~--~v~A  356 (550)
T 3q2v_A          287 GLDFEA----KQQYILHVRVEN--EE-PFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEIT--SYTA  356 (550)
T ss_dssp             CCCTTT----CSEEEEEEEEEE--SS-CCCSSCCCEEEEEEEEEECCCC-CCEESSSSCEEEEETTCCSSCEEE--ECCE
T ss_pred             cCCccc----cceEEEEEEEEe--CC-CCCCCccceEEEEEEEEEecCC-CCeEcCcceEEEEecCCCCCCEEE--EEeC
Confidence            999999    568999999997  33 2122357899999999999999 999999999999999999999997  8999


Q ss_pred             eeCC-------------------------------------------------eEEEEecCCCceeEEEEEEEEEEEeCC
Q psy4200         301 TDSD-------------------------------------------------LVIAEETHTAEKLSSSATLIVQVTDVN  331 (388)
Q Consensus       301 ~D~D-------------------------------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvN  331 (388)
                      +|+|                                                 .|.|.| .|.|+++++++|+|+|+|+|
T Consensus       357 ~D~D~g~n~~i~y~i~~~~~~~f~id~~tG~i~~~~~lDrE~~~~~~~~~y~l~V~A~D-~g~p~~s~~~~v~I~V~DvN  435 (550)
T 3q2v_A          357 REPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATD-DGSPIATGTGTLLLVLLDVN  435 (550)
T ss_dssp             ECCCCSTTCCCEEEEEECTTCCEEECTTTCEEEECSCCCTTCTTTCCSSEEEEEEEEEC-CSSSCCCEEEEEEEEEECCC
T ss_pred             CCCCCCCCCCEEEEEecCCCCcEEEeCCCcEEEECCccCcccccccCCCEEEEEEEEEe-CCCCcceeEEEEEEEEEeCC
Confidence            9999                                                 244555 67788999999999999999


Q ss_pred             CCCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCce
Q psy4200         332 DNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYG  383 (388)
Q Consensus       332 D~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~  383 (388)
                      ||+|+|.+  |...|+|+.+.|.+   |.|+|+|.+.|+. +++|+|.++..
T Consensus       436 Dn~P~~~~--~~~~v~e~~~~~~~---v~A~D~D~~~n~~-~~~~~l~~~~~  481 (550)
T 3q2v_A          436 DNAPIPEP--RNMQFCQRNPQPHI---ITILDPDLPPNTS-PFTAELTHGAS  481 (550)
T ss_dssp             CCCCEESC--SSCEEESSSCCCEE---EEEECCSCTTSSS-SCCCEEEECCS
T ss_pred             CCCCcCcC--cccceeecCCCcEE---EEEECCCCCCCCC-CEEEEECCCCC
Confidence            99999974  67889999988864   9999999999985 69999996543

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=7.2e-55  Score=435.66  Aligned_cols=315  Identities=26%  Similarity=0.418  Sum_probs=275.4

Q ss_pred             CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC-----CCeEEEEEecC-------CcEEEeCCeeEEEEcc-
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE-----GSKVKYGIYGT-------DRFSLDRDSGELRVAQ-   67 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D-----~~~i~y~i~~~-------~~F~Id~~tG~i~~~~-   67 (388)
                      |.|+|||+|+|.+..|. ++|+|++++|+.|+++.|+|+|     |+.++|+|.++       +.|.|++.+|.|++.+ 
T Consensus        98 V~DvNDn~P~F~~~~y~-~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~  176 (559)
T 3q2w_A           98 VIDMNDNRPEFLHQVWN-GSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAA  176 (559)
T ss_dssp             EECCCCCCCEESCSEEE-EEEETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCS
T ss_pred             EEeCCCCCCccCCCeeE-EEEeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEec
Confidence            57999999999999999 9999999999999999999998     47899999742       5799999999999987 


Q ss_pred             cCCCcccceeeEEEEEEEEec--CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEE
Q psy4200          68 PLDREYNSTNTSTIVLTLEGV--DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTN  145 (388)
Q Consensus        68 ~lD~e~~~~~~~~l~v~a~D~--~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~  145 (388)
                      +||||+...|.  |+|.|.|.  .|.                                              .++++.+.
T Consensus       177 ~LD~E~~~~y~--l~V~A~D~~g~p~----------------------------------------------~~~s~t~~  208 (559)
T 3q2w_A          177 GLDREKVQQYT--LIIQATDMEGNPT----------------------------------------------YGLSNTAT  208 (559)
T ss_dssp             CCCTTTCCEEE--EEEEEEHHHHCTT----------------------------------------------TCCEEEEE
T ss_pred             cCCcccCCEEE--EEEEEEECCCCCC----------------------------------------------CCccceEE
Confidence            99999999999  99999882  121                                              13577889


Q ss_pred             EEEEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCC--CceEEEEEec-CCCCceEE----eCCeeEEEe
Q psy4200         146 VDIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQ--PRSIYYDLLT-NPDEFFLI----DSNTGELKT  218 (388)
Q Consensus       146 v~V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~--~~~v~y~l~~-~~~~~F~i----d~~tG~i~~  218 (388)
                      ++|.|.|+|||+|+|.+..|..+|.|+. +|+.++++.|+|+|.+.  ++.++|+|.+ +..+.|.|    +..+|.|++
T Consensus       209 v~I~V~DvNDn~P~f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g~~~~~F~I~~~~~~~~G~i~~  287 (559)
T 3q2w_A          209 AVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTV  287 (559)
T ss_dssp             EEEEEECCSCSCCEESSSEEEEEEESSC-SSEEEEEEEEECCSCTTSTTTSBCCEEEESCTTCCEEEEECTTTCEEEEEE
T ss_pred             EEEEEEeCCCCCCccccccceeEecCCC-CCcEEEEEEEEcCCCCCCCceeEEEEEecCCCCCceEEEecCCCCcEEEEe
Confidence            9999999999999999999999999997 89999999999999986  5689999986 45789999    578999999


Q ss_pred             cccCCccccCCcccEEEEEEEEEEccCCC--CcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeee
Q psy4200         219 AKPLDREILGGTNGVISLTVRAREMVDGK--PLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDL  296 (388)
Q Consensus       219 ~~~LD~E~~~~~~~~~~l~v~a~D~~~g~--~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l  296 (388)
                      .++||||.    ...|.|.|.|+|.  |.  .+..++++++++|.|+|.|+|| +|.|....|.+.|.|+.+.|+.|+  
T Consensus       288 ~~~LD~E~----~~~y~l~V~A~D~--~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~~~v~En~~~g~~v~--  358 (559)
T 3q2w_A          288 VKPIDFET----NRMFVLTVAAENQ--VPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLT--  358 (559)
T ss_dssp             CSCCCTTT----CSEEEEEEECCBS--SCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEEEEEESCCCTTCEEE--
T ss_pred             CCCCCCcc----CceEEEEEEEEcC--CccccCCCCCCceEEEEEEEEEeCCC-CCcccccceEEEEeCCCCCCCEEE--
Confidence            99999999    6689999999972  21  1112457899999999999999 699999999999999999999997  


Q ss_pred             EEEEeeCC------------------------------------------------eEEEEecCCCceeEEEEEEEEEEE
Q psy4200         297 DMIVTDSD------------------------------------------------LVIAEETHTAEKLSSSATLIVQVT  328 (388)
Q Consensus       297 ~l~a~D~D------------------------------------------------~v~~~~~~~~~~~s~~~~v~I~V~  328 (388)
                      ++.|+|+|                                                .|.|.| .|.|+++++++|+|+|+
T Consensus       359 ~v~A~D~D~g~n~~i~Ysi~~~~~~~f~Id~~tG~i~~~~~lDrE~~~~~~~~y~l~V~A~D-~g~p~~ss~~~v~I~V~  437 (559)
T 3q2w_A          359 TLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASD-NGIPPMSGTGTLQIYLL  437 (559)
T ss_dssp             ECCEECSCSSSCCCEEEEEEECTTCCEEECTTTCEEEESSCCCSSSTTSCSSEEEEEEEEEE-CSSSCCEEEEEEEEEEE
T ss_pred             EEEEECCCCCCCCceEEEEccCCccceEecCCceEEEEccccCcccccccCCEEEEEEEEEc-CCCCcceEEEEEEEEEE
Confidence            89999999                                                355555 67788999999999999


Q ss_pred             eCCCCCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEc
Q psy4200         329 DVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLG  380 (388)
Q Consensus       329 dvND~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~  380 (388)
                      |+|||+|+|.+..|  .++|+  .|..+++|.|+|+|.+.|+. +++|+|..
T Consensus       438 DvNDn~P~f~~~~~--~v~e~--~~~~v~~v~A~D~D~~~n~~-~~~ysl~~  484 (559)
T 3q2w_A          438 DINDNAPQVLPQEA--ETCET--PEPNSINITALDYDIDPNAG-PFAFDLPL  484 (559)
T ss_dssp             CCSCCCCEESCTTC--CCCSC--CCTTCEEECEECSCCTTSSS-SCEEECCS
T ss_pred             EccCCCCcccCCce--EEeec--CCCcEEEEEEEcCCCCCCCC-CEEEEEcC
Confidence            99999999986654  57888  45557899999999999872 49999984

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=6.9e-56  Score=441.52  Aligned_cols=315  Identities=25%  Similarity=0.342  Sum_probs=276.5

Q ss_pred             CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCCC------CeEEEEEecC-------CcEEEeCCeeEEEEc-
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG------SKVKYGIYGT-------DRFSLDRDSGELRVA-   66 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~------~~i~y~i~~~-------~~F~Id~~tG~i~~~-   66 (388)
                      |.|+|||+|+|.+..|. ++|+|++++|+.|+++.|+|+|.      +.++|+|.++       +.|.|++.||.|++. 
T Consensus       104 V~DvNDn~P~F~~~~y~-~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~  182 (546)
T 1l3w_A          104 VIDQNDNRPKFTQDVFR-GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIG  182 (546)
T ss_dssp             EECCSCCCCEESSSCEE-EEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECS
T ss_pred             EEecccCcCEecCceeE-EEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEec
Confidence            57999999999999999 99999999999999999999983      6899999852       489999999999995 


Q ss_pred             ccCCCcccceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEE
Q psy4200          67 QPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNV  146 (388)
Q Consensus        67 ~~lD~e~~~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v  146 (388)
                      ++||||....|.  |+|.|+|.+                                               ..++++.+.+
T Consensus       183 ~~LD~E~~~~y~--l~V~A~D~g-----------------------------------------------~~~~s~~~~v  213 (546)
T 1l3w_A          183 TGLDREKFPEYT--LTVQATDLE-----------------------------------------------GAGLSVEGKA  213 (546)
T ss_dssp             CCCCTTTCCEEE--EEEEEEHHH-----------------------------------------------HTSCEEECCE
T ss_pred             cCCCcccCceEE--EEEEEEECC-----------------------------------------------CCCcceEEEE
Confidence            789999999999  888888821                                               0135677899


Q ss_pred             EEEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCC--CCCCceEEEEEecCCCCceEEe--C--CeeEEEecc
Q psy4200         147 DIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD--LAQPRSIYYDLLTNPDEFFLID--S--NTGELKTAK  220 (388)
Q Consensus       147 ~V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D--~~~~~~v~y~l~~~~~~~F~id--~--~tG~i~~~~  220 (388)
                      +|.|.|+|||+|+|.+..|..+|.|+ ++|+.|+++.|+|+|  .+.|+.++|+|.++..++|.|+  +  .+|.|++.+
T Consensus       214 ~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~~~~~~F~I~~d~~~~~G~i~~~~  292 (546)
T 1l3w_A          214 IIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAK  292 (546)
T ss_dssp             EEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESS
T ss_pred             EEEEeecCCCCCccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcEEEEEEEeCCCceEEEEecCCCCeEEEEECc
Confidence            99999999999999999999999999 999999999999999  6788999999987567899995  3  689999999


Q ss_pred             cCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEE
Q psy4200         221 PLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIV  300 (388)
Q Consensus       221 ~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a  300 (388)
                      +||||.    ...|.|.|+|+|  .|.. ..+.++++++|.|+|.|+|| +|.|....|.+.|+|+.++|+.|+  ++.|
T Consensus       293 ~LD~E~----~~~y~l~V~a~D--~~~~-~~~~~s~~~~v~I~V~DvND-~P~f~~~~y~~~V~En~~~g~~v~--~v~A  362 (546)
T 1l3w_A          293 GLDFEL----RKQYVLQITVEN--AEPF-SVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKII--SLVA  362 (546)
T ss_dssp             CCCCSS----CCCEEEEECCEE--SSCC-SSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEE--ECCE
T ss_pred             cCCccc----ccEEEEEEEEEE--CCCC-CCCCcceeEEEEEEEEcCCC-CCcEecceEEEEEeCCCCCCCEEE--EEEE
Confidence            999999    557999999997  3321 12346889999999999999 999999999999999999999997  9999


Q ss_pred             eeCC------------------------------------------------eEEEEecCCCceeEEEEEEEEEEEeCCC
Q psy4200         301 TDSD------------------------------------------------LVIAEETHTAEKLSSSATLIVQVTDVND  332 (388)
Q Consensus       301 ~D~D------------------------------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND  332 (388)
                      +|+|                                                .|.|.| .|.|+++++++|+|+|+|+||
T Consensus       363 ~D~D~g~n~~i~ysi~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D-~g~p~~s~~~~v~I~V~DvND  441 (546)
T 1l3w_A          363 QDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTD-DGVSVGTGTGTLILHVLDVND  441 (546)
T ss_dssp             ECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEE-CSSSCCCCCEEEECCBCCCCC
T ss_pred             ECCCCCCCceEEEEECCCCCCcEEEeCCcEEEEECCccCCccccCCCCEEEEEEEEEE-CCCCCcEeEEEEEEEEEECCC
Confidence            9999                                                244555 567789999999999999999


Q ss_pred             CCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCce
Q psy4200         333 NVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYG  383 (388)
Q Consensus       333 ~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~  383 (388)
                      |+|+|.+  +..+|+|+.++|+ +  |.|+|+|.+.|+. +++|+|.++..
T Consensus       442 n~P~f~~--~~~~v~e~~~~g~-v--v~A~D~D~~~n~~-~~~y~l~~~~~  486 (546)
T 1l3w_A          442 NGPVPSP--RVFTMCDQNPEPQ-V--LTISDADIPPNTY-PYKVSLSHGSD  486 (546)
T ss_dssp             SCCCBSC--CCEEECSSSCCCE-E--EEBCCSSCTTTTC-CCCCBCCSCSS
T ss_pred             CcCCccC--ceEEEecCCCCCe-E--EEEEeCCCCCCCc-cEEEEECCCCC
Confidence            9999984  3688999999998 3  9999999999874 48999986543

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=3.6e-54  Score=448.58  Aligned_cols=316  Identities=25%  Similarity=0.352  Sum_probs=277.6

Q ss_pred             CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCCC------CeEEEEEecC-------CcEEEeCCeeEEEEc-
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG------SKVKYGIYGT-------DRFSLDRDSGELRVA-   66 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~------~~i~y~i~~~-------~~F~Id~~tG~i~~~-   66 (388)
                      |.|+|||+|+|.+..|. ++|+|++++|+.|++++|+|+|.      +.++|+|.++       +.|.|++.||.|++. 
T Consensus       253 V~DvNDn~P~F~~~~y~-~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~  331 (880)
T 1q55_A          253 VIDQNDNRPKFTQDVFR-GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIG  331 (880)
T ss_dssp             EECCSCCCCEESSSCEE-EEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECS
T ss_pred             EEecCCCCCCccCCcEE-EEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEec
Confidence            57999999999999999 99999999999999999999983      6899999853       489999999999996 


Q ss_pred             ccCCCcccceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEE
Q psy4200          67 QPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNV  146 (388)
Q Consensus        67 ~~lD~e~~~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v  146 (388)
                      ++||||....|.  |+|.|+|.+                                               ..++++.+.+
T Consensus       332 ~~LDrE~~~~y~--l~V~A~D~g-----------------------------------------------~~~~s~~~~v  362 (880)
T 1q55_A          332 TGLDREKFPEYT--LTVQATDLE-----------------------------------------------GAGLSVEGKA  362 (880)
T ss_dssp             CCCCTTTCCEEE--EEEEEEHHH-----------------------------------------------HTSCEEECCE
T ss_pred             ccCCHHHcceeE--EEEEEEECC-----------------------------------------------CCCccceeEE
Confidence            789999999999  888888821                                               0135777899


Q ss_pred             EEEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCC--CCCCceEEEEEecCCCCceEEe--C--CeeEEEecc
Q psy4200         147 DIRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGD--LAQPRSIYYDLLTNPDEFFLID--S--NTGELKTAK  220 (388)
Q Consensus       147 ~V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D--~~~~~~v~y~l~~~~~~~F~id--~--~tG~i~~~~  220 (388)
                      +|+|.|+|||+|+|.+..|..+|.|+ ++|+.|+++.|+|+|  .+.|+.++|+|.++..++|.|+  +  .+|.|++.+
T Consensus       363 ~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~~v~A~D~D~~~g~n~~v~Ysi~~~~~~~F~I~~d~~~~~G~i~~~~  441 (880)
T 1q55_A          363 IIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAK  441 (880)
T ss_dssp             EEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESS
T ss_pred             EEEEEeccCCCCCccccceEEEeecC-CCCcEEEEEEEECCCCCCCCCceEEEEEecCCCceEEEEecCCCceEEEeccc
Confidence            99999999999999999999999999 999999999999999  6778999999987667899995  3  679999999


Q ss_pred             cCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEE
Q psy4200         221 PLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIV  300 (388)
Q Consensus       221 ~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a  300 (388)
                      +||||.    ...|.|.|+|+|  .|. ...+.++++++|.|+|.|+|| +|.|....|.+.|+|+.++|+.|+  ++.|
T Consensus       442 ~LD~E~----~~~y~l~V~A~D--~~~-~~~~~~sst~tV~I~V~DvND-~P~f~~~~y~~~V~En~~~Gt~V~--~v~A  511 (880)
T 1q55_A          442 GLDFEL----RKQYVLQITVEN--AEP-FSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKII--SLVA  511 (880)
T ss_dssp             CCCCSS----CCCEEEEECCEE--SSC-CSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEE--ECCE
T ss_pred             CCCccc----CCcEEEEEEEEE--CCC-CCCCCcceeEEEEEEEEeCCC-CCEEecCceEEEEeCCCCCCCEEE--EEEE
Confidence            999999    557999999997  332 112347889999999999999 999999999999999999999997  9999


Q ss_pred             eeCC------------------------------------------------eEEEEecCCCceeEEEEEEEEEEEeCCC
Q psy4200         301 TDSD------------------------------------------------LVIAEETHTAEKLSSSATLIVQVTDVND  332 (388)
Q Consensus       301 ~D~D------------------------------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND  332 (388)
                      +|+|                                                .|.|.| .|.|+++++++|+|+|+|+||
T Consensus       512 ~D~D~g~n~~v~Ysi~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D-~g~p~~sst~tv~I~V~DvND  590 (880)
T 1q55_A          512 QDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTD-DGVSVGTGTGTLILHVLDVND  590 (880)
T ss_dssp             ECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEE-CSSSCCCCCEEEECCBCCCCC
T ss_pred             EeCCCCCCCcEEEEECCCCCCCEEEeCCccEEEECCccCcccccCCCCEEEEEEEEEE-CCCCCcEeEEEEEEEEEeCCC
Confidence            9999                                                345555 567889999999999999999


Q ss_pred             CCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCcee
Q psy4200         333 NVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI  384 (388)
Q Consensus       333 ~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~~  384 (388)
                      |+|+|.+.  ...|+|+.++|+ +  |.|+|+|.+.|+. +++|+|.++...
T Consensus       591 n~P~f~~~--~~~v~E~~~~g~-v--v~A~D~D~~~n~~-~~~ysl~~~~~~  636 (880)
T 1q55_A          591 NGPVPSPR--VFTMCDQNPEPQ-V--LTISDADIPPNTY-PYKVSLSHGSDL  636 (880)
T ss_dssp             SCCCBSCC--CEEECSSSCCCE-E--EEBCCSSCTTTTC-CCCCBCCSCSSS
T ss_pred             CCCCccCc--ceEEecCCCCCe-E--EEEecCCCCCCCc-eEEEEECCCCCC
Confidence            99999854  688999999998 3  9999999999974 589999865443

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=2.4e-52  Score=416.70  Aligned_cols=300  Identities=28%  Similarity=0.393  Sum_probs=263.9

Q ss_pred             eEEecCCC--CCcEEEEEEEECCC-CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec
Q psy4200          19 LVVEENTP--PGTIVSTLEGVDPE-GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV   88 (388)
Q Consensus        19 ~~v~E~~~--~gt~v~~v~a~D~D-~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~   88 (388)
                      ++|+||.+  .++.|+++.| |.| ++.|+|+|.+.       ++|.|++.+|.|+++++||||+...|.  |+|.|.|.
T Consensus         7 ~~v~En~~~~~~~~v~~v~a-d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~--l~v~a~d~   83 (550)
T 3q2v_A            7 ISCPENEKGEFPKNLVQIKS-NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYI--LYSHAVSS   83 (550)
T ss_dssp             EEEETTCCSSSSEEEEECEE-GGGGTSCEEEEEESBTTTBSSCSSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEET
T ss_pred             EEEeCCCCCCcCeEEEEEec-CCCCCceEEEEEECCCCCCCCCceEEEeCCceEEEECCccCcccCCeeE--EEEEEEeC
Confidence            89999984  6789999999 666 78999999862       389999999999999999999999999  88888882


Q ss_pred             CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEE
Q psy4200          89 DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGE  168 (388)
Q Consensus        89 ~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~  168 (388)
                      .                                               ...+...+.++|.|.|+|||+|.|.+..|.++
T Consensus        84 ~-----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~  116 (550)
T 3q2v_A           84 N-----------------------------------------------GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS  116 (550)
T ss_dssp             T-----------------------------------------------SCBCSCCEEEEEEEECCSCCCCCBSCSEEEEE
T ss_pred             C-----------------------------------------------CCcccceEEEEEEEEecCCCCCccCCCceEEE
Confidence            1                                               00134567899999999999999999999999


Q ss_pred             EecCCCCCcEEEEEEEeeCCCC---CCceEEEEEecC-----CCCceEEeCCeeEEEe-cccCCccccCCcccEEEEEEE
Q psy4200         169 IMESAPIGSVVLRVEAKDGDLA---QPRSIYYDLLTN-----PDEFFLIDSNTGELKT-AKPLDREILGGTNGVISLTVR  239 (388)
Q Consensus       169 v~E~~~~g~~v~~v~A~D~D~~---~~~~v~y~l~~~-----~~~~F~id~~tG~i~~-~~~LD~E~~~~~~~~~~l~v~  239 (388)
                      |.|++++|+.++++.|+|+|.+   .|+.++|+|.++     ..++|.|++.+|.|++ .++||||.    ...|.|.|+
T Consensus       117 V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~----~~~y~l~V~  192 (550)
T 3q2v_A          117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES----YPTYTLVVQ  192 (550)
T ss_dssp             EETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTT----CSEEEEEEE
T ss_pred             EeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCccc----CcEEEEEEE
Confidence            9999999999999999999998   689999999852     3569999999999998 57999999    568999999


Q ss_pred             EEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC---------------
Q psy4200         240 AREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD---------------  304 (388)
Q Consensus       240 a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D---------------  304 (388)
                      |+|  .|.+    .++++++|.|+|.|+|||+|.|....|.+.|+|+ +.|+.|+  ++.|+|+|               
T Consensus       193 A~D--~g~~----~~s~t~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~--~v~a~D~D~~~n~~~~~~ysi~~  263 (550)
T 3q2v_A          193 AAD--LQGE----GLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIA--TLKVTDDDAPNTPAWKAVYTVVN  263 (550)
T ss_dssp             EES--GGGT----SCCCEEEEEEEEECCSCSCCEESSSEEEEEEESS-CSSCCCE--EECEECCSCTTSTTTCEEEEESS
T ss_pred             EEc--CCCC----CeeEEEEEEEEecccCCCCCEEecceeEEEEecC-CCCCEEE--EEEEEECCCCCCCcEEEEEEEEe
Confidence            997  3333    5789999999999999999999999999999999 9999997  89999998               


Q ss_pred             -----------------------------------eEEEEecCC--CceeEEEEEEEEEEEeCCCCCCeeeccceEEEEe
Q psy4200         305 -----------------------------------LVIAEETHT--AEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVL  347 (388)
Q Consensus       305 -----------------------------------~v~~~~~~~--~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~~v~  347 (388)
                                                         .|.|.+.++  .+.++++++|+|+|+|+|| +|.|.+..|.+.|+
T Consensus       264 ~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~DvND-~P~f~~~~~~~~v~  342 (550)
T 3q2v_A          264 DPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVP  342 (550)
T ss_dssp             CSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEEEEEEEESSCCCSSCCCEEEEEEEEEECCCC-CCEESSSSCEEEEE
T ss_pred             CCCCcEEEEecCCCccEEEEecccCCccccceEEEEEEEEeCCCCCCCccceEEEEEEEEEecCC-CCeEcCcceEEEEe
Confidence                                               244444321  3457899999999999999 99999999999999


Q ss_pred             cCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCcee
Q psy4200         348 ETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI  384 (388)
Q Consensus       348 e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~~  384 (388)
                      |++++|+.|+++.|+|+|.|.+++  ++|+|.++...
T Consensus       343 E~~~~gt~v~~v~A~D~D~g~n~~--i~y~i~~~~~~  377 (550)
T 3q2v_A          343 EDFGVGQEITSYTAREPDTFMDQK--ITYRIWRDTAN  377 (550)
T ss_dssp             TTCCSSCEEEECCEECCCCSTTCC--CEEEEEECTTC
T ss_pred             cCCCCCCEEEEEeCCCCCCCCCCC--EEEEEecCCCC
Confidence            999999999999999999999987  99999866443

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=2.1e-51  Score=410.54  Aligned_cols=303  Identities=29%  Similarity=0.431  Sum_probs=260.2

Q ss_pred             eEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec
Q psy4200          19 LVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV   88 (388)
Q Consensus        19 ~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~   88 (388)
                      ++|+||.+ |+....+.+.+.|   |+.|+|+|.+.       ++|.|++.||.|++.++||||+...|.  |+|.|.|.
T Consensus         7 ~~v~En~~-g~~~~~i~~~~~D~~~n~~i~Ysi~~~~~~~~~~~~F~id~~tG~l~~~~~LDrE~~~~y~--l~v~a~D~   83 (559)
T 3q2w_A            7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH--LRAHAVDI   83 (559)
T ss_dssp             EEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEET
T ss_pred             EEeeCCCC-CCCCeEEEEEeeCCCCCcEEEEEEECCCCCCCCCceEEEeCCceEEEECCccCCCCCceEE--EEEEEEEC
Confidence            89999997 7666666666554   68999999863       479999999999999999999999999  88888882


Q ss_pred             CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEE
Q psy4200          89 DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGE  168 (388)
Q Consensus        89 ~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~  168 (388)
                      +                                               ...+++.+.++|.|.|+|||+|+|.+..|.++
T Consensus        84 g-----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~  116 (559)
T 3q2w_A           84 N-----------------------------------------------GNQVENPIDIVINVIDMNDNRPEFLHQVWNGS  116 (559)
T ss_dssp             T-----------------------------------------------SCEEEEEEEEEEEEECCCCCCCEESCSEEEEE
T ss_pred             C-----------------------------------------------CCccceeEEEEEEEEeCCCCCCccCCCeeEEE
Confidence            1                                               00145677899999999999999999999999


Q ss_pred             EecCCCCCcEEEEEEEeeCCCC--CCceEEEEEecC-C----CCceEEeCCeeEEEecc-cCCccccCCcccEEEEEEEE
Q psy4200         169 IMESAPIGSVVLRVEAKDGDLA--QPRSIYYDLLTN-P----DEFFLIDSNTGELKTAK-PLDREILGGTNGVISLTVRA  240 (388)
Q Consensus       169 v~E~~~~g~~v~~v~A~D~D~~--~~~~v~y~l~~~-~----~~~F~id~~tG~i~~~~-~LD~E~~~~~~~~~~l~v~a  240 (388)
                      |.|++++|+.++++.|+|+|.+  .|+.++|+|.++ +    .++|.|++.+|.|.+.+ +||||.    ...|.|.|+|
T Consensus       117 V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~----~~~y~l~V~A  192 (559)
T 3q2w_A          117 VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK----VQQYTLIIQA  192 (559)
T ss_dssp             EETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTT----CCEEEEEEEE
T ss_pred             EeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCccc----CCEEEEEEEE
Confidence            9999999999999999999987  588999999752 2    26899999999999987 999999    5689999999


Q ss_pred             EEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC----------------
Q psy4200         241 REMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD----------------  304 (388)
Q Consensus       241 ~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D----------------  304 (388)
                      +|. .|.+  .+.++++++|.|+|.|+|||+|.|....|.+.|+|+. +|+.++  ++.|+|+|                
T Consensus       193 ~D~-~g~p--~~~~s~t~~v~I~V~DvNDn~P~f~~~~y~~~V~En~-~g~~v~--~v~a~D~D~~~~~n~~~~y~i~~g  266 (559)
T 3q2w_A          193 TDM-EGNP--TYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVA--NLTVTDKDQPHTPAWNAAYRISGG  266 (559)
T ss_dssp             EHH-HHCT--TTCCEEEEEEEEEEECCSCSCCEESSSEEEEEEESSC-SSEEEE--EEEEECCSCTTSTTTSBCCEEEES
T ss_pred             EEC-CCCC--CCCccceEEEEEEEEeCCCCCCccccccceeEecCCC-CCcEEE--EEEEEcCCCCCCCceeEEEEEecC
Confidence            974 1211  1247899999999999999999999999999999997 899997  89999998                


Q ss_pred             -----------------------------------eEEEEecC----C-CceeEEEEEEEEEEEeCCCCCCeeeccceEE
Q psy4200         305 -----------------------------------LVIAEETH----T-AEKLSSSATLIVQVTDVNDNVPSFELNAYTG  344 (388)
Q Consensus       305 -----------------------------------~v~~~~~~----~-~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~  344 (388)
                                                         .|.|.+..    | .++++++++|+|+|+|+|| +|.|.+..|.+
T Consensus       267 ~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~~  345 (559)
T 3q2w_A          267 DPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKII  345 (559)
T ss_dssp             CTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEEE
T ss_pred             CCCCceEEEecCCCCcEEEEeCCCCCCccCceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCCC-CCcccccceEE
Confidence                                               23344321    1 2568899999999999999 69999999999


Q ss_pred             EEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCcee
Q psy4200         345 NVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI  384 (388)
Q Consensus       345 ~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~~  384 (388)
                      .|+|+.++|+.|++|.|+|+|.+.|++  ++|+|.++...
T Consensus       346 ~v~En~~~g~~v~~v~A~D~D~g~n~~--i~Ysi~~~~~~  383 (559)
T 3q2w_A          346 RQEEGLHAGTMLTTLTAQDPDRYMQQN--IRYTKLSDPAN  383 (559)
T ss_dssp             EEESCCCTTCEEEECCEECSCSSSCCC--EEEEEEECTTC
T ss_pred             EEeCCCCCCCEEEEEEEECCCCCCCCc--eEEEEccCCcc
Confidence            999999999999999999999999987  99999965443

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=5.1e-52  Score=413.65  Aligned_cols=303  Identities=26%  Similarity=0.356  Sum_probs=261.6

Q ss_pred             CCcceEEecCCC--CCcEEEEEEEECCC-CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEE
Q psy4200          15 VNSPLVVEENTP--PGTIVSTLEGVDPE-GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLT   84 (388)
Q Consensus        15 ~~~~~~v~E~~~--~gt~v~~v~a~D~D-~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~   84 (388)
                      .|. ++|+||++  .+..|+++.+ |.| ++.|+|+|.++       ++|.|++.+|.|+++++||||+...|.  |+|.
T Consensus        10 ~~~-~~v~En~~g~~~~~v~~~~~-d~d~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~--l~v~   85 (546)
T 1l3w_A           10 IPP-IKVSENERGPFPKRLVQIKS-NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYV--LSSH   85 (546)
T ss_dssp             CCC-EEEESSCCSSSCEEEEECCC-SGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE--EEEE
T ss_pred             cce-eEecCCCCCCCCcEEEEEEc-CCCCCceEEEEEECCCCCCCCCceEEEeCCccEEEECCcCCcccCceEE--EEEE
Confidence            466 89999997  2345777775 555 79999999863       379999999999999999999999999  9988


Q ss_pred             EEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCc
Q psy4200          85 LEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSS  164 (388)
Q Consensus        85 a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~  164 (388)
                      |.|.+                                               ...+++.+.++|.|.|+|||+|.|.+..
T Consensus        86 A~D~~-----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~  118 (546)
T 1l3w_A           86 AVSEN-----------------------------------------------GSPVEEPMEITINVIDQNDNRPKFTQDV  118 (546)
T ss_dssp             EEESS-----------------------------------------------SCBCSCCEEEEEEEECCSCCCCEESSSC
T ss_pred             EEeCC-----------------------------------------------CCcccceEEEEEEEEecccCcCEecCce
Confidence            88821                                               0013456789999999999999999999


Q ss_pred             ceEEEecCCCCCcEEEEEEEeeCCCC---CCceEEEEEecC-----CCCceEEeCCeeEEEec-ccCCccccCCcccEEE
Q psy4200         165 FSGEIMESAPIGSVVLRVEAKDGDLA---QPRSIYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVIS  235 (388)
Q Consensus       165 ~~~~v~E~~~~g~~v~~v~A~D~D~~---~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~  235 (388)
                      |.++|.|++++|+.|+++.|+|+|.+   .|+.++|+|.++     ..++|.|++.+|.|++. ++||||.    ...|.
T Consensus       119 y~~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~----~~~y~  194 (546)
T 1l3w_A          119 FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK----FPEYT  194 (546)
T ss_dssp             EEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTT----CCEEE
T ss_pred             eEEEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCccc----CceEE
Confidence            99999999999999999999999998   689999999863     24799999999999995 7999999    56899


Q ss_pred             EEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC-----------
Q psy4200         236 LTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD-----------  304 (388)
Q Consensus       236 l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D-----------  304 (388)
                      |.|+|+|  .|.+    .+++++.+.|+|.|+|||+|.|....|.+.|+|+ ++|+.|+  ++.|+|+|           
T Consensus       195 l~V~A~D--~g~~----~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~--~v~A~D~D~~~g~n~~v~y  265 (546)
T 1l3w_A          195 LTVQATD--LEGA----GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQ--RLSVTDLDMPGTPAWQAVY  265 (546)
T ss_dssp             EEEEEEH--HHHT----SCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEE--EECBCCCSCTTSTTSCEEC
T ss_pred             EEEEEEE--CCCC----CcceEEEEEEEEeecCCCCCccccccceEEEEeC-CCCCEEE--EEEEEeCCCCCCCCcEEEE
Confidence            9999997  3433    5789999999999999999999999999999999 9999997  89999988           


Q ss_pred             ---------------------------------------eEEEEecCC--CceeEEEEEEEEEEEeCCCCCCeeeccceE
Q psy4200         305 ---------------------------------------LVIAEETHT--AEKLSSSATLIVQVTDVNDNVPSFELNAYT  343 (388)
Q Consensus       305 ---------------------------------------~v~~~~~~~--~~~~s~~~~v~I~V~dvND~~P~f~~~~y~  343 (388)
                                                             .|.|.|.++  .+.++++++|+|+|+|+|| +|.|.++.|.
T Consensus       266 ~i~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~DvND-~P~f~~~~y~  344 (546)
T 1l3w_A          266 KIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSR  344 (546)
T ss_dssp             CBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEEC
T ss_pred             EEEeCCCceEEEEecCCCCeEEEEECccCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEEcCCC-CCcEecceEE
Confidence                                                   122333221  2457899999999999999 9999999999


Q ss_pred             EEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEcCcee
Q psy4200         344 GNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGEYGI  384 (388)
Q Consensus       344 ~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~~~~~  384 (388)
                      +.|+|+.++|+.|++|.|+|+|.|.+++  ++|+|.++...
T Consensus       345 ~~V~En~~~g~~v~~v~A~D~D~g~n~~--i~ysi~~~~~~  383 (546)
T 1l3w_A          345 VDVSEDLSRGEKIISLVAQDPDKQQIQK--LSYFIGNDPAR  383 (546)
T ss_dssp             CCBCTTCCSSEEEEECCEECCCTTCCCC--EEEEECCCSSC
T ss_pred             EEEeCCCCCCCEEEEEEEECCCCCCCce--EEEEECCCCCC
Confidence            9999999999999999999999999987  99999976443

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=9.9e-50  Score=385.25  Aligned_cols=292  Identities=26%  Similarity=0.362  Sum_probs=250.3

Q ss_pred             CcEEEEEEEECCC---CCeEEEEEecC---CcEEEeC--------CeeEEEEcccCCCccc---ceeeEEEEEEEEecC-
Q psy4200          28 GTIVSTLEGVDPE---GSKVKYGIYGT---DRFSLDR--------DSGELRVAQPLDREYN---STNTSTIVLTLEGVD-   89 (388)
Q Consensus        28 gt~v~~v~a~D~D---~~~i~y~i~~~---~~F~Id~--------~tG~i~~~~~lD~e~~---~~~~~~l~v~a~D~~-   89 (388)
                      ..++.+|+|+|+|   |+.++|+|.+.   ..|+|++        .+|.|+++++||||+.   ..|.  +.|.|+|.+ 
T Consensus         8 ~~Pv~~v~AtD~D~g~n~~v~Ysi~~~~~~~~F~I~~~~~~f~v~~tG~i~~~~~LD~E~~~~~~~~~--~~V~a~d~g~   85 (419)
T 3ubh_A            8 VRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTID--FWVIITNMGH   85 (419)
T ss_dssp             EEEEEEEEEEGGGGCSTTCEEEECCCSSTTCEEEESSCCSSEEECTTSEEEESSCCCGGGSCTTCEEE--EEEEEEC--C
T ss_pred             ccceEEEEEEcccCCCCceEEEEEecCCCCceEEEcCCCccEEECCCcEEEECCccCccccCccceEE--EEEEEEeCCC
Confidence            3578999999998   79999999863   4688886        7999999999999998   5778  888887721 


Q ss_pred             CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCc--ceE
Q psy4200          90 PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSS--FSG  167 (388)
Q Consensus        90 P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~--~~~  167 (388)
                      |.                                             ..++++.+.|+|.|.|+|||+|.|.+..  |..
T Consensus        86 ~~---------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~  120 (419)
T 3ubh_A           86 NA---------------------------------------------GIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA  120 (419)
T ss_dssp             CS---------------------------------------------SSCCEEEEEEEEEEECCCCSCCEECCSSSSCEE
T ss_pred             CC---------------------------------------------CCCCcceEEEEEEEEECCCCCCcccCCCCcEEE
Confidence            00                                             0035667899999999999999999877  789


Q ss_pred             EEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec-CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCC
Q psy4200         168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDG  246 (388)
Q Consensus       168 ~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g  246 (388)
                      .|.|++++|+.|+++.|+|+|.|.|  ++|+|.. +..++|.|++.+|.|++.+.||+|.    ...|.|.|+|+|.  |
T Consensus       121 ~v~E~~~~gt~v~~v~A~D~D~g~n--~~y~i~~~~~~~~F~I~~~tG~i~~~~~ld~e~----~~~y~l~V~A~D~--g  192 (419)
T 3ubh_A          121 VVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL----DMEYVLYVKAEDQ--N  192 (419)
T ss_dssp             EECTTCCTTCEEEECCEECSSTTCC--EEEEEEEESSSSCEEECTTTCEEEECSSSCCCB----TCEEEEEEEEEEE--E
T ss_pred             EEeCCCCCCCEEEEEEEECCCCCce--eEEEEEeCCCCCeEEEeCCceEEEEeccccccc----ccEEEEEEEEEEC--C
Confidence            9999999999999999999999875  8999985 4568999999999999999999998    5579999999983  3


Q ss_pred             CCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC----------------------
Q psy4200         247 KPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD----------------------  304 (388)
Q Consensus       247 ~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D----------------------  304 (388)
                      .+...+.+++++.+.|.|.| |||+|.|.+..|.+.|+||.++|+.|+  ++.|+|+|                      
T Consensus       193 ~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~y~~~v~En~~~gt~v~--~v~A~D~dn~~i~Ysi~~~~~~~~~F~I~~  269 (419)
T 3ubh_A          193 GKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDII--SIKAKSFADREIRYTLKAQGQGAGTFNIGP  269 (419)
T ss_dssp             EEC--CCEEECCCEEEEEEE-SCCCCEESSSCEEEEEETTCCTTCEEE--ECCEECSSCCCCEEEEEESSSCCSSEEECT
T ss_pred             CCccCcccccceEEEEEEEC-CCCCCceecCeeEEEecCCCCCCcEEE--EEEEecCCCCceEEEEecCCCCCCcEEEEC
Confidence            32122346788899999999 999999999999999999999999997  89999987                      


Q ss_pred             ------------------------eEEEEecCCCceeEEEEEEEEEEEeCCCCCCeeeccceEE-EEecCCCCCcEEEEE
Q psy4200         305 ------------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTG-NVLETAQAGTSITTI  359 (388)
Q Consensus       305 ------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~-~v~e~~~~g~~v~~v  359 (388)
                                              .|.|.++  .++++++++|+|+|+|+|||+|+|.++.|.. .|+|+.++|+.|++|
T Consensus       270 ~tG~i~~~~~LD~E~~~~~~~y~l~V~a~dd--~~~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~~v  347 (419)
T 3ubh_A          270 TSGIVKLAKELDFEDLRQPHVYSLIVTATED--SGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRV  347 (419)
T ss_dssp             TTCEEEECSCCCTTCTTSCSEEEEEEEEECT--TTSCEEEEEEEEEEECCCCCCCEESSSEEEEEEEETTCCTTCEEEEC
T ss_pred             CCCEEEECcccCccccccccEEEEEEEEEeC--CCCcEEEEEEEEEEEccCCCCCcccCCcceeEEecCCCCCCCEEEEE
Confidence                                    2334432  3568899999999999999999999999987 799999999999999


Q ss_pred             EEEcCCCCCCCceeEEEEEEcC
Q psy4200         360 TALDSDGGDYGTGGIVYELLGE  381 (388)
Q Consensus       360 ~a~D~D~~~~~~~~i~ysi~~~  381 (388)
                      .|+|+|.|.|+.  ++|+|.++
T Consensus       348 ~A~D~D~g~n~~--v~Y~i~~~  367 (419)
T 3ubh_A          348 KAMDSDSGSNAE--IEYLVSDD  367 (419)
T ss_dssp             CEECSSCGGGGC--EEEEESCT
T ss_pred             EEEeCCCCCCCE--EEEEEcCC
Confidence            999999999987  99999864

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=4.7e-45  Score=352.55  Aligned_cols=243  Identities=29%  Similarity=0.391  Sum_probs=212.9

Q ss_pred             CCccCCCCCeeccCC--CcceEEecCCCCCcEEEEEEEECCC-CCeEEEEEec---CCcEEEeCCeeEEEEcccCCCccc
Q psy4200           1 MEAYGNSPPSFTTDV--NSPLVVEENTPPGTIVSTLEGVDPE-GSKVKYGIYG---TDRFSLDRDSGELRVAQPLDREYN   74 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~--~~~~~v~E~~~~gt~v~~v~a~D~D-~~~i~y~i~~---~~~F~Id~~tG~i~~~~~lD~e~~   74 (388)
                      |.|+|||+|+|.+..  |. +.|+|++++|+.|+++.|+|+| +..++|+|..   .+.|.|++.+|.|++.+.||+|..
T Consensus       101 V~DvNDn~P~F~~~~~~~~-~~v~E~~~~gt~v~~v~A~D~D~g~n~~y~i~~~~~~~~F~I~~~tG~i~~~~~ld~e~~  179 (419)
T 3ubh_A          101 VKDVNDEPPYFINRPLPMQ-AVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD  179 (419)
T ss_dssp             EECCCCSCCEECCSSSSCE-EEECTTCCTTCEEEECCEECSSTTCCEEEEEEEESSSSCEEECTTTCEEEECSSSCCCBT
T ss_pred             EEECCCCCCcccCCCCcEE-EEEeCCCCCCCEEEEEEEECCCCCceeEEEEEeCCCCCeEEEeCCceEEEEecccccccc
Confidence            579999999999887  67 8999999999999999999999 5569999984   358999999999999999999999


Q ss_pred             ceeeEEEEEEEEecC-CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeec
Q psy4200          75 STNTSTIVLTLEGVD-PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDV  153 (388)
Q Consensus        75 ~~~~~~l~v~a~D~~-P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dv  153 (388)
                      ..|.  |+|.|.|.+ |.                                            ....+++.+.++|.|.| 
T Consensus       180 ~~y~--l~V~A~D~g~~~--------------------------------------------~~~~~~~t~~v~I~V~d-  212 (419)
T 3ubh_A          180 MEYV--LYVKAEDQNGKV--------------------------------------------DDRRFQSTPEERLSIVG-  212 (419)
T ss_dssp             CEEE--EEEEEEEEEEEC----------------------------------------------CCEEECCCEEEEEEE-
T ss_pred             cEEE--EEEEEEECCCCc--------------------------------------------cCcccccceEEEEEEEC-
Confidence            9999  999999821 10                                            00123556678999999 


Q ss_pred             CCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec--CCCCceEEeCCeeEEEecccCCccccCCcc
Q psy4200         154 QNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT--NPDEFFLIDSNTGELKTAKPLDREILGGTN  231 (388)
Q Consensus       154 Nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~--~~~~~F~id~~tG~i~~~~~LD~E~~~~~~  231 (388)
                      |||+|.|.+..|.++|.|+.++|+.|+++.|+|+|   ++.++|+|..  +..++|.|++.+|.|++.++||||.... .
T Consensus       213 ndn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~d---n~~i~Ysi~~~~~~~~~F~I~~~tG~i~~~~~LD~E~~~~-~  288 (419)
T 3ubh_A          213 GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQ-P  288 (419)
T ss_dssp             SCCCCEESSSCEEEEEETTCCTTCEEEECCEECSS---CCCCEEEEEESSSCCSSEEECTTTCEEEECSCCCTTCTTS-C
T ss_pred             CCCCCceecCeeEEEecCCCCCCcEEEEEEEecCC---CCceEEEEecCCCCCCcEEEECCCCEEEECcccCcccccc-c
Confidence            99999999999999999999999999999999987   5689999973  5578999999999999999999998531 2


Q ss_pred             cEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEE-EEeCCCCCCCeeeeeEEEEeeCC
Q psy4200         232 GVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVV-HIPEDIPDGSLLPDLDMIVTDSD  304 (388)
Q Consensus       232 ~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~-~v~E~~~~g~~v~~l~l~a~D~D  304 (388)
                      ..|.|.|+|+|  ++.     .+++++.|.|+|.|+|||+|.|....|.. .|.|+.++|+.|+  ++.|+|+|
T Consensus       289 ~~y~l~V~a~d--d~~-----~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~--~v~A~D~D  353 (419)
T 3ubh_A          289 HVYSLIVTATE--DSG-----GFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL--RVKAMDSD  353 (419)
T ss_dssp             SEEEEEEEEEC--TTT-----SCEEEEEEEEEEECCCCCCCEESSSEEEEEEEETTCCTTCEEE--ECCEECSS
T ss_pred             cEEEEEEEEEe--CCC-----CcEEEEEEEEEEEccCCCCCcccCCcceeEEecCCCCCCCEEE--EEEEEeCC
Confidence            37999999996  433     36889999999999999999999999987 7999999999997  89999999

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=1.2e-42  Score=323.30  Aligned_cols=226  Identities=27%  Similarity=0.459  Sum_probs=200.8

Q ss_pred             eEEecC--CCCCcEEEEEEEECCC--CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEecCCC
Q psy4200          19 LVVEEN--TPPGTIVSTLEGVDPE--GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPE   91 (388)
Q Consensus        19 ~~v~E~--~~~gt~v~~v~a~D~D--~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~~P~   91 (388)
                      ++|+|+  .+.|+.|+++. +|+|  ++.++|+|.++   ..|.|++.+|.|++.++||||+...|.  |+|.|.|... 
T Consensus         7 ~~v~E~~~~~~~~~v~~va-~D~D~g~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~~~-   82 (322)
T 2a62_A            7 MFVLEEFSGPEPILVGRLH-TDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYT--LTAQAVDFET-   82 (322)
T ss_dssp             EECCCSCCCSSCEECCCCC-CCCCCSSCCCEEEEEETTBTTTEEEETTTTEEEECSCCCTTTCSBCC--EEEEEECTTT-
T ss_pred             eeeccccCCCCCEEEEEEE-EcCCCCCCEEEEEEECCCCCCcEEEeCCcCEEEEeccCCcccccEEE--EEEEEEECCC-
Confidence            889999  89999999985 8888  47999999864   489999999999999999999999999  8888887210 


Q ss_pred             CccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEEEec
Q psy4200          92 GSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIME  171 (388)
Q Consensus        92 f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~v~E  171 (388)
                                                                   ...++..+.++|.|.|+|||+|.|.+..|..+|+|
T Consensus        83 ---------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E  117 (322)
T 2a62_A           83 ---------------------------------------------NKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPE  117 (322)
T ss_dssp             ---------------------------------------------CSEEEEEEEECEECCCCSCSCBCCSSSEEEEEECS
T ss_pred             ---------------------------------------------CCcccceEEEEEEEEecCCCCCccCCCceEEEEeC
Confidence                                                         00145667899999999999999999999999999


Q ss_pred             CCCCCcEEEEEEEeeCCC---CCCceEEEEEecCCCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEEEEEccCCC
Q psy4200         172 SAPIGSVVLRVEAKDGDL---AQPRSIYYDLLTNPDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMVDGK  247 (388)
Q Consensus       172 ~~~~g~~v~~v~A~D~D~---~~~~~v~y~l~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~a~D~~~g~  247 (388)
                      +.++|+.|+++.|+|+|.   |.|+.++|+|.++ ..+|.|++.+|.|++. ++||||.    ...|.|.|+|+|  .|.
T Consensus       118 ~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~-~~~F~Id~~tG~i~~~~~~LD~E~----~~~y~l~V~a~D--~g~  190 (322)
T 2a62_A          118 MSILGTSVTNVTATDADDPVYGNSAKLVYSILEG-QPYFSIEPETAIIKTALPNMDREA----KEEYLVVIQAKD--MGG  190 (322)
T ss_dssp             SCCTTCBCCCCCCCBCSCSSSTTSSCEEEEEEEC-TTTEEECTTTCCEEECSSCCCGGG----CSEEEEEEEEEE--SCS
T ss_pred             CCCCCCEEEEEEEEeCCCCCCCccEEEEEEEccC-CCCEEEecCCCEEEecccCCCccc----CCeEEEEEEEEE--CCC
Confidence            999999999999999996   7788999999864 4789999999999998 8999999    568999999998  454


Q ss_pred             CcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200         248 PLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD  304 (388)
Q Consensus       248 ~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D  304 (388)
                      |.  +.++++++|.|+|.|+|||+|.|.+..|.+.|+|+.+.|+.|+  ++.|+|+|
T Consensus       191 p~--~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~--~v~A~D~D  243 (322)
T 2a62_A          191 HS--GGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIG--RVKANDQD  243 (322)
T ss_dssp             SS--SCCBCCEEEEEEECCCCCCCCCCSCSEEEEEECSCCSSCCEEE--EEECCCSS
T ss_pred             CC--CCceeEEEEEEEEEecCCCCCeecCCCceeEeECCCCCCcEEE--EEEEEeCC
Confidence            31  1368899999999999999999999999999999999999997  99999999

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=6.1e-42  Score=300.00  Aligned_cols=205  Identities=32%  Similarity=0.527  Sum_probs=185.9

Q ss_pred             CCCCCeeccCCCcc-eEEecCCCCCcEEEEEEEECCCCCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEE
Q psy4200           5 GNSPPSFTTDVNSP-LVVEENTPPGTIVSTLEGVDPEGSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTST   80 (388)
Q Consensus         5 nd~~P~F~~~~~~~-~~v~E~~~~gt~v~~v~a~D~D~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~   80 (388)
                      .|++|.|.+..|.. ++|+|++++|+.|+++.|+|+|++.++|+|.++   ++|.|++.+|.|+++++||||....|.  
T Consensus         2 vn~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~--   79 (210)
T 3mvs_A            2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFT--   79 (210)
T ss_dssp             CCCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTCCCCEEEEESHHHHHHEEECTTTCEEEESSCCCTTTCCEEE--
T ss_pred             CCCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCCCcEEEEEeCCCCCCcEEEeCCCCEEEECCccCCcccceEE--
Confidence            58999999998872 589999999999999999999999999999863   479999999999999999999999999  


Q ss_pred             EEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCee
Q psy4200          81 IVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIF  160 (388)
Q Consensus        81 l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f  160 (388)
                      |+|.|.|                                                  ++....+.++|.|.|+|||+|.|
T Consensus        80 l~v~a~D--------------------------------------------------~~~~~~~~v~I~V~DvNDn~P~f  109 (210)
T 3mvs_A           80 VEFSVSD--------------------------------------------------HQGVITRKVNIQVGDVNDNAPTF  109 (210)
T ss_dssp             EEEEEEC--------------------------------------------------SSCEEEEEEEEEEECCCCCCCEE
T ss_pred             EEEEEEe--------------------------------------------------CCCCEEEEEEEEEEeCCCCCCcC
Confidence            7777766                                                  44456679999999999999999


Q ss_pred             eCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEE
Q psy4200         161 INSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA  240 (388)
Q Consensus       161 ~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a  240 (388)
                      .+..|.+.|.|+.++|+.|+++.|+|+|.|.|+.++|+|.. ..++|.|++.+|.|++.++||||.    ...|.|.|+|
T Consensus       110 ~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~-~~~~F~Id~~tG~i~~~~~LD~E~----~~~y~l~V~a  184 (210)
T 3mvs_A          110 HNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQP-PSPFFAIDSARGIVTVIQELDYEV----TQAYQLTVNA  184 (210)
T ss_dssp             CSCSEEEEEETTCCTTCEEEECCEECCSSGGGGCEEEEESS-CCSSEEECTTTCEEEECSCCCTTT----CSEEEEEEEE
T ss_pred             CCceEEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEeC-CCCCEEEeCCcEEEEECCcCCCcc----cceEEEEEEE
Confidence            99999999999999999999999999999999999999985 457999999999999999999999    5689999999


Q ss_pred             EEccCCCCcCCCCceEEEEEEEEEcccCCCC
Q psy4200         241 REMVDGKPLQEDQATAFAQVTVTILDVNDSP  271 (388)
Q Consensus       241 ~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~  271 (388)
                      +|  .|.+   +++++++.+.|+|.|+||+|
T Consensus       185 ~D--~g~~---~~~s~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          185 TD--QDKT---RPLSTLANLAIIITDMQDMD  210 (210)
T ss_dssp             EE--CCSS---SCCEEEEEEEEEEECCCCCC
T ss_pred             EE--CCCC---CCCEEEEEEEEEEEccCCCC
Confidence            98  4432   36899999999999999986

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=1.8e-41  Score=315.62  Aligned_cols=253  Identities=24%  Similarity=0.321  Sum_probs=200.2

Q ss_pred             CcceEEecCCCCCcEEEEEEEECCCCCeEEEEEec-CCcEEEeCCeeEEEEcccCCCcccc-----eeeEEEEEEEEecC
Q psy4200          16 NSPLVVEENTPPGTIVSTLEGVDPEGSKVKYGIYG-TDRFSLDRDSGELRVAQPLDREYNS-----TNTSTIVLTLEGVD   89 (388)
Q Consensus        16 ~~~~~v~E~~~~gt~v~~v~a~D~D~~~i~y~i~~-~~~F~Id~~tG~i~~~~~lD~e~~~-----~~~~~l~v~a~D~~   89 (388)
                      +. ++.+|+.+.|+.++++.+.|+   .++|+|.+ ..+|.|++ +|.|+++++||||...     .|.  |+|.+.|..
T Consensus         9 ~~-atd~D~g~ng~v~y~l~~~~~---~~~f~i~~~~~~F~i~~-tG~l~~~~~LD~E~~~~~~~~~~~--l~v~a~d~~   81 (316)
T 3ubf_A            9 IE-FTEADGDTEGKSVFQLEKETD---KETFKIRDDNPWVTVET-NGAVRVKKKWDYEELGPEKTIDFW--VIITNMGHN   81 (316)
T ss_dssp             EE-EESGGGCSTTCEEEECCCSST---TCEEEESSCCSSEEECT-TSEEEESSCCCGGGSCTTCEEEEE--EEEEC----
T ss_pred             EE-EEecCCCCCceEEEEEEcCCC---cceEEEeCCCCeEEECC-CeEEEECCccChhhcccccceEEE--EEEEEcCCC
Confidence            44 677777888888877766443   56888875 45899999 9999999999999853     344  444444411


Q ss_pred             CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCc--ceE
Q psy4200          90 PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSS--FSG  167 (388)
Q Consensus        90 P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~--~~~  167 (388)
                      .                                              ...+++.+.++|.|.|+|||+|.|.+..  |.+
T Consensus        82 ~----------------------------------------------~~~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~  115 (316)
T 3ubf_A           82 A----------------------------------------------GIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA  115 (316)
T ss_dssp             -------------------------------------------------CCCEEEEEEEEEECTTCCCCEECCSSSSEEE
T ss_pred             C----------------------------------------------CCcccceEEEEEEEEECCCCCCccCCCCCCEEE
Confidence            0                                              0024678899999999999999999876  899


Q ss_pred             EEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec-CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEEccCC
Q psy4200         168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDG  246 (388)
Q Consensus       168 ~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g  246 (388)
                      .|.|++++|+.|+++.|+|+|.+.|  ++|+|.. +..++|.|++.+|.|++.++||||.    ...|.|.|+|+|  .|
T Consensus       116 ~v~En~~~gt~v~~v~A~D~D~g~n--i~Y~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~----~~~y~l~V~A~D--~g  187 (316)
T 3ubf_A          116 VVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL----DMEYVLYVKAED--QN  187 (316)
T ss_dssp             EECTTCCTTCEEEECCEECSSTTCC--EEEEEEEEESSSCEEECTTTCEEEECSSCCCCT----TCEEEEEEEEEE--SC
T ss_pred             EEeCCCCCCCEEEEEEEECCCCCCc--eEEEEEeCCCCCEEEEECCccEEEECCcCCccc----CcEEEEEEEEEe--CC
Confidence            9999999999999999999999976  9999985 4678999999999999999999998    568999999998  44


Q ss_pred             CCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC----------------------
Q psy4200         247 KPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD----------------------  304 (388)
Q Consensus       247 ~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D----------------------  304 (388)
                      ++...+.+++++.+.|.|.| |||+|.|.+..|.+.|+|+.++|+.|+  ++.|+|+|                      
T Consensus       188 ~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v~--~v~A~D~Dn~~i~Y~i~~~~~~~~~F~Id~  264 (316)
T 3ubf_A          188 GKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDII--SIKAKSFADREIRYTLKAQGQGAGTFNIGP  264 (316)
T ss_dssp             C-------CBCCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEEE--ECCEECTTCCCEEEEEEEESSCTTTEEECT
T ss_pred             CCCCCccccceEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEEE--EEEEEeCCCCEEEEEEEcCCCCCCeEEEEC
Confidence            32122356788899999999 999999999999999999999999996  89999988                      


Q ss_pred             ------------------------eEEEEecCCCceeEEEEEEEEEEEeCCCCC
Q psy4200         305 ------------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNV  334 (388)
Q Consensus       305 ------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND~~  334 (388)
                                              .|.|.++.  ++++++++|+|+|+|+||||
T Consensus       265 ~tG~i~~~~~LD~E~~~~~~~y~l~V~A~dd~--g~~~~~~~v~I~V~DvNDn~  316 (316)
T 3ubf_A          265 TSGIVKLAKELDFEDLRQPHVYSLIVTATEDS--GGFSTSVDLTIRVTDVNDNA  316 (316)
T ss_dssp             TTCEEEECSCCCSSCTTSCSEEEEEEEEEESS--SSCEEEEEEEEEEECC----
T ss_pred             CeEEEEECCcCCccccCCCceEEEEEEEEECC--CCCEEEEEEEEEEEecCCCC
Confidence                                    24455433  35889999999999999985

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.3e-42  Score=306.18  Aligned_cols=208  Identities=19%  Similarity=0.176  Sum_probs=180.1

Q ss_pred             eeccCCCcceEEecCCCCCcEEEEEEEECCCC-CeEEEEEe------------cCCcEEEeCCeeEEEEcccCCCcccce
Q psy4200          10 SFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG-SKVKYGIY------------GTDRFSLDRDSGELRVAQPLDREYNST   76 (388)
Q Consensus        10 ~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~-~~i~y~i~------------~~~~F~Id~~tG~i~~~~~lD~e~~~~   76 (388)
                      .|.+..|. ++|+|++++|+.|++|.|+|+|. ..+.|+|.            ..++|.|++.||.|+++++||||....
T Consensus         2 ~F~~~~Y~-~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~   80 (246)
T 2x2u_A            2 YFSRDAYW-EKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEK   80 (246)
T ss_dssp             EESCSEEE-EEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEEECCSEEECTTTCEEEESSCBCHHHHHH
T ss_pred             CccCCceE-EEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCCCCCEEEECCCcEEEEECCcCChhHhhh
Confidence            58999999 99999999999999999999994 34555554            247899999999999999999999999


Q ss_pred             e------------eEEEEEEEEecC-CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeE
Q psy4200          77 N------------TSTIVLTLEGVD-PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSK  143 (388)
Q Consensus        77 ~------------~~~l~v~a~D~~-P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~  143 (388)
                      |            .  |+|.|.|.+ |                                              .+.+++.
T Consensus        81 y~~~~~G~p~~~~~--l~V~a~D~g~~----------------------------------------------~~~~~~~  112 (246)
T 2x2u_A           81 LSVRNRGFPLLTVY--LKVFLSPTSLR----------------------------------------------EGECQWP  112 (246)
T ss_dssp             HHHTSTTSCCCEEE--EEEECC-----------------------------------------------------CCCTT
T ss_pred             hccccCCCcccceE--EEEEEEcCCCC----------------------------------------------CCcccce
Confidence            8            6  777776621 1                                              0124556


Q ss_pred             EEEEEEEeecCCCCCe----------eeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCe
Q psy4200         144 TNVDIRVGDVQNTPPI----------FINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNT  213 (388)
Q Consensus       144 ~~v~V~V~dvNd~~P~----------f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~t  213 (388)
                      +.|.|.|.|+|||+|+          |.+..|.++|.|+.++|+.|+++.|+|+|.|.|+.++|+|.++...+|.|++.+
T Consensus       113 ~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~F~Id~~t  192 (246)
T 2x2u_A          113 GCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDS  192 (246)
T ss_dssp             TEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCTTSSEECCTTC
T ss_pred             EEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCCCCCEEEECCc
Confidence            7899999999999999          999999999999999999999999999999999999999997657899999999


Q ss_pred             eEEEecccCCccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccC
Q psy4200         214 GELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFN  275 (388)
Q Consensus       214 G~i~~~~~LD~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~  275 (388)
                      |.|++.++||||.    ...|.|.|.|+|. +|.|    +++++++|.|+|.|+|||+|.|.
T Consensus       193 G~i~~~~~LDrE~----~~~y~l~V~A~d~-dg~p----~~ss~~~v~I~V~DvNDn~P~F~  245 (246)
T 2x2u_A          193 LEVSTRWALDREQ----REKYELVAVCTVH-AGAR----EEVVMVPFPVTVYDEDDSAPEFE  245 (246)
T ss_dssp             CEEEESSCBCTTT----CSEEEEEEEEEEC----C----CEEEEEEEEEEEECSSCCSCCCC
T ss_pred             CEEEeCCccCccc----cceEEEEEEEEec-CCCC----cceEEEEEEEEEEEeCCCCCccC
Confidence            9999999999999    5689999999985 4444    68999999999999999999995

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=8.3e-39  Score=297.66  Aligned_cols=213  Identities=28%  Similarity=0.353  Sum_probs=179.8

Q ss_pred             CCccCCCCCeeccCC--CcceEEecCCCCCcEEEEEEEECCC-CCeEEEEEec---CCcEEEeCCeeEEEEcccCCCccc
Q psy4200           1 MEAYGNSPPSFTTDV--NSPLVVEENTPPGTIVSTLEGVDPE-GSKVKYGIYG---TDRFSLDRDSGELRVAQPLDREYN   74 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~--~~~~~v~E~~~~gt~v~~v~a~D~D-~~~i~y~i~~---~~~F~Id~~tG~i~~~~~lD~e~~   74 (388)
                      |.|+|||+|+|.+..  |. +.|+|++++|+.|+++.|+|+| +..++|+|.+   .++|.|++.+|.|+++++||||..
T Consensus        96 V~DvNDn~P~F~~~~~~y~-~~v~En~~~gt~v~~v~A~D~D~g~ni~Y~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~~  174 (316)
T 3ubf_A           96 VKDVNDEPPYFINRPLPMQ-AVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD  174 (316)
T ss_dssp             EECTTCCCCEECCSSSSEE-EEECTTCCTTCEEEECCEECSSTTCCEEEEEEEEESSSCEEECTTTCEEEECSSCCCCTT
T ss_pred             EEECCCCCCccCCCCCCEE-EEEeCCCCCCCEEEEEEEECCCCCCceEEEEEeCCCCCEEEEECCccEEEECCcCCcccC
Confidence            579999999999987  78 9999999999999999999999 4559999984   469999999999999999999999


Q ss_pred             ceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecC
Q psy4200          75 STNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQ  154 (388)
Q Consensus        75 ~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvN  154 (388)
                      ..|.  |+|.|.|.+...                                           ....+++.+.++|.|.| |
T Consensus       175 ~~y~--l~V~A~D~g~~~-------------------------------------------~~~~~~~~~~v~I~V~d-n  208 (316)
T 3ubf_A          175 MEYV--LYVKAEDQNGKV-------------------------------------------DDRRFQSTPEERLSIVG-G  208 (316)
T ss_dssp             CEEE--EEEEEEESCC--------------------------------------------------CBCCCEEEEEEE-S
T ss_pred             cEEE--EEEEEEeCCCCC-------------------------------------------CCccccceEEEEEEEEc-C
Confidence            9999  999999832000                                           00123456688999999 9


Q ss_pred             CCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEe--cCCCCceEEeCCeeEEEecccCCccccCCccc
Q psy4200         155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL--TNPDEFFLIDSNTGELKTAKPLDREILGGTNG  232 (388)
Q Consensus       155 d~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~--~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~  232 (388)
                      ||+|+|.+..|.++|.|+.++|+.|+++.|+|+|   ++.++|+|.  ++..++|.|++.+|.|++.++||||.... ..
T Consensus       209 Dn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D---n~~i~Y~i~~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~-~~  284 (316)
T 3ubf_A          209 KRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQ-PH  284 (316)
T ss_dssp             CCCCEESSSSEEEEEETTCCTTCEEEECCEECTT---CCCEEEEEEEESSCTTTEEECTTTCEEEECSCCCSSCTTS-CS
T ss_pred             CCCCEEcCCCceEEEeCCCCCCCEEEEEEEEeCC---CCEEEEEEEcCCCCCCeEEEECCeEEEEECCcCCccccCC-Cc
Confidence            9999999999999999999999999999999998   568999996  35678999999999999999999998420 15


Q ss_pred             EEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCC
Q psy4200         233 VISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSP  271 (388)
Q Consensus       233 ~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~  271 (388)
                      .|.|.|+|+|  +++     .++++++|.|+|.|+||||
T Consensus       285 ~y~l~V~A~d--d~g-----~~~~~~~v~I~V~DvNDn~  316 (316)
T 3ubf_A          285 VYSLIVTATE--DSG-----GFSTSVDLTIRVTDVNDNA  316 (316)
T ss_dssp             EEEEEEEEEE--SSS-----SCEEEEEEEEEEECC----
T ss_pred             eEEEEEEEEE--CCC-----CCEEEEEEEEEEEecCCCC
Confidence            8999999996  443     3689999999999999986

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=6.2e-38  Score=274.78  Aligned_cols=199  Identities=24%  Similarity=0.435  Sum_probs=167.3

Q ss_pred             CcceEEecCC--CCCcEEEEEEEECCC--CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec
Q psy4200          16 NSPLVVEENT--PPGTIVSTLEGVDPE--GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV   88 (388)
Q Consensus        16 ~~~~~v~E~~--~~gt~v~~v~a~D~D--~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~   88 (388)
                      |. +.|.|+.  |.|+.|+++ |+|+|  ++.++|+|.++   ..|.|++.+|.|+++++||||....|.  |+|.|.|.
T Consensus         6 ~~-~~v~En~~~p~~~~v~~v-a~D~D~gn~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~   81 (215)
T 2a4e_A            6 NQ-FFVIEEYTGPDPVLVGRL-HSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYT--LMAQAVDR   81 (215)
T ss_dssp             CE-EEEETTCCSSSCEEEEEC-CCTTCCSSSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEET
T ss_pred             ee-EEEeccCCCCCCEEEEEE-EECCCCCCCeEEEEEECCCCCCeEEEECCceEEEECCccCCccCCEEE--EEEEEEEC
Confidence            45 8999994  689999988 89998  47999999864   489999999999999999999999999  99888882


Q ss_pred             CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEE
Q psy4200          89 DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGE  168 (388)
Q Consensus        89 ~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~  168 (388)
                      .-                                              ...+++.+.++|.|.|+|||+|.|.+..|..+
T Consensus        82 ~~----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~  115 (215)
T 2a4e_A           82 DT----------------------------------------------NRPLEPPSEFIVKVQDINDNPPEFLHEIYHAN  115 (215)
T ss_dssp             TT----------------------------------------------CCEEEEEEEEEEEEECCCCCCCEESSSSEEEE
T ss_pred             CC----------------------------------------------CCcccccEEEEEEEeeCCCCCCCccCCceEEE
Confidence            10                                              00145677899999999999999999999999


Q ss_pred             EecCCCCCcEEEEEEEeeCCC---CCCceEEEEEecCCCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEEEEEcc
Q psy4200         169 IMESAPIGSVVLRVEAKDGDL---AQPRSIYYDLLTNPDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMV  244 (388)
Q Consensus       169 v~E~~~~g~~v~~v~A~D~D~---~~~~~v~y~l~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~a~D~~  244 (388)
                      |.|+.++|+.|+++.|+|+|.   |.|+.++|+|.++ ..+|.|++.+|.|+++ ++||||.    ...|.|.|+|+|  
T Consensus       116 v~E~~~~Gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~-~~~F~Id~~tG~I~~~~~~LD~E~----~~~y~l~V~A~D--  188 (215)
T 2a4e_A          116 VPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-QPYFSVEAQTGIIRTALPNMDREA----KEEYHVVIQAKD--  188 (215)
T ss_dssp             EETTCCTTCEEEECCEECSSCTTTCSSSCCEEEEEES-TTTEEECTTTCEEEECSSCCCSSS----CSEEEEEEEEET--
T ss_pred             EECCCCCCCEEEEEEEEECCCCCCCCceEEEEEEeCC-CCcEEEeCCccEEEEcccCCCccc----CCEEEEEEEEEE--
Confidence            999999999999999999997   7889999999864 4699999999999998 9999998    568999999997  


Q ss_pred             CCCCcCCCCceEEEEEEEEEcccCCCCCc
Q psy4200         245 DGKPLQEDQATAFAQVTVTILDVNDSPPV  273 (388)
Q Consensus       245 ~g~~~~~~~~~~~~~v~I~V~dvNd~~P~  273 (388)
                      .|.+  .+.++++++|.|+|.|+|||+|.
T Consensus       189 ~g~~--~~~~s~~~~v~I~V~DvNDn~P~  215 (215)
T 2a4e_A          189 MGGH--MGGLSGTTKVTITLTDDYKDDDK  215 (215)
T ss_dssp             TTTC--TTCCEEEEEEEEEEEC-------
T ss_pred             CCCC--CCCceeEEEEEEEEEECCCCCCC
Confidence            4432  12478999999999999999995

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=2e-38  Score=294.83  Aligned_cols=210  Identities=23%  Similarity=0.383  Sum_probs=183.2

Q ss_pred             CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC------CCeEEEEEec-CCcEEEeCCeeEEEEc-ccCCCc
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE------GSKVKYGIYG-TDRFSLDRDSGELRVA-QPLDRE   72 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D------~~~i~y~i~~-~~~F~Id~~tG~i~~~-~~lD~e   72 (388)
                      |.|+|||+|.|.+..|. ++|+|++++|+.|+++.|+|+|      |+.++|+|.+ ...|.|++.+|.|+++ ++||||
T Consensus        96 V~DvNDn~P~F~~~~y~-~~v~E~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~~~~F~Id~~tG~i~~~~~~LD~E  174 (322)
T 2a62_A           96 VQDINDNAPEFLNGPYH-ATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDRE  174 (322)
T ss_dssp             CCCCSCSCBCCSSSEEE-EEECSSCCTTCBCCCCCCCBCSCSSSTTSSCEEEEEEECTTTEEECTTTCCEEECSSCCCGG
T ss_pred             EEecCCCCCccCCCceE-EEEeCCCCCCCEEEEEEEEeCCCCCCCccEEEEEEEccCCCCEEEecCCCEEEecccCCCcc
Confidence            68999999999999999 9999999999999999999988      3689999985 4689999999999998 899999


Q ss_pred             ccceeeEEEEEEEEecC-CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEe
Q psy4200          73 YNSTNTSTIVLTLEGVD-PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVG  151 (388)
Q Consensus        73 ~~~~~~~~l~v~a~D~~-P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~  151 (388)
                      ....|.  |+|.|.|.+ |.                                              +++++.+.++|.|.
T Consensus       175 ~~~~y~--l~V~a~D~g~p~----------------------------------------------~~~s~~~~v~I~V~  206 (322)
T 2a62_A          175 AKEEYL--VVIQAKDMGGHS----------------------------------------------GGLSGTTTLTVTLT  206 (322)
T ss_dssp             GCSEEE--EEEEEEESCSSS----------------------------------------------SCCBCCEEEEEEEC
T ss_pred             cCCeEE--EEEEEEECCCCC----------------------------------------------CCceeEEEEEEEEE
Confidence            999999  999999831 10                                              13567889999999


Q ss_pred             ecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec-CCCCceEEe----CCeeEEEecccCCccc
Q psy4200         152 DVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLID----SNTGELKTAKPLDREI  226 (388)
Q Consensus       152 dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~-~~~~~F~id----~~tG~i~~~~~LD~E~  226 (388)
                      |+|||+|.|.+..|.++|.|+.++|+.|+++.|+|+|.+.|+.++|+|.. +..++|.|+    +.+|.|+++++||||.
T Consensus       207 DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g~~~~~F~I~~d~~~~tG~i~~~~~LD~E~  286 (322)
T 2a62_A          207 DVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFET  286 (322)
T ss_dssp             CCCCCCCCCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC---CCSSBCCBCCTTTSEEEEEBCSCCCCSS
T ss_pred             ecCCCCCeecCCCceeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEECCCCCCcEEEeccCCCceEEEEECCcCCccc
Confidence            99999999999999999999999999999999999999999999999975 456899998    4689999999999999


Q ss_pred             cCCcccEEEEEEEEEEccCCCCcC---CCCceEEEEEEEEEc
Q psy4200         227 LGGTNGVISLTVRAREMVDGKPLQ---EDQATAFAQVTVTIL  265 (388)
Q Consensus       227 ~~~~~~~~~l~v~a~D~~~g~~~~---~~~~~~~~~v~I~V~  265 (388)
                          ...|.|.|+|+|  .|.|..   ...++++++|.|.|.
T Consensus       287 ----~~~y~l~V~A~D--~g~pp~~~~~~~~s~~~~V~I~V~  322 (322)
T 2a62_A          287 ----KKSYTLKVEAAN--IHIDPRFSSRGPFKDTATVKIVVE  322 (322)
T ss_dssp             ----CCEEEEEEEEEC--CCSSCTTSSCCCCCCCCEEEEEEC
T ss_pred             ----CCeEEEEEEEEE--CCCCCccccCCCcccEEEEEEEEC
Confidence                568999999998  454421   123567888888874

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=4.3e-35  Score=257.18  Aligned_cols=188  Identities=26%  Similarity=0.383  Sum_probs=166.2

Q ss_pred             eEEecCCC--CCcEEEEEEEECCC-CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec
Q psy4200          19 LVVEENTP--PGTIVSTLEGVDPE-GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV   88 (388)
Q Consensus        19 ~~v~E~~~--~gt~v~~v~a~D~D-~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~   88 (388)
                      ++|+||.+  .|+.|+++.| |.| ++.++|+|.+.       ++|.|++.||.|++.++||||....|.  |+|.|.|.
T Consensus         7 ~~V~En~~~~~~~~v~~v~a-D~d~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~   83 (213)
T 3qrb_A            7 ISCPENEKGEFPKNLVQIKS-NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYI--LYSHAVSS   83 (213)
T ss_dssp             EEEETTCCSSSSEEEEECCC-GGGGTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEET
T ss_pred             EEEeCCCCCCCCcEEEEEEE-CCCCCceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEE--EEEEEEeC
Confidence            89999998  7888999999 776 79999999862       379999999999999999999999999  99998882


Q ss_pred             CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEE
Q psy4200          89 DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGE  168 (388)
Q Consensus        89 ~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~  168 (388)
                      +                                               ...+++.+.++|.|.|+|||+|.|.+..|.++
T Consensus        84 ~-----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~  116 (213)
T 3qrb_A           84 N-----------------------------------------------GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGS  116 (213)
T ss_dssp             T-----------------------------------------------SCBCSCCEEEEEEEECCSCCCCEESCSEEEEE
T ss_pred             C-----------------------------------------------CCcccceEEEEEEEEEccCCCCccCCCceEEE
Confidence            1                                               01145668999999999999999999999999


Q ss_pred             EecCCCCCcEEEEEEEeeCCCC---CCceEEEEEecC-----CCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEE
Q psy4200         169 IMESAPIGSVVLRVEAKDGDLA---QPRSIYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVR  239 (388)
Q Consensus       169 v~E~~~~g~~v~~v~A~D~D~~---~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~  239 (388)
                      |.|+.++|+.|+++.|+|+|.+   .|+.++|+|.++     ..++|.|++.+|.|++. ++||||.    ...|.|.|+
T Consensus       117 v~En~~~gt~v~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~----~~~y~l~V~  192 (213)
T 3qrb_A          117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES----YPTYTLVVQ  192 (213)
T ss_dssp             EETTCCTTCEEEECCEECCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTT----CCEEEEEEE
T ss_pred             EECCCCCCcEEEEEEEEeCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCcc----CceEEEEEE
Confidence            9999999999999999999999   789999999852     34799999999999997 7999999    568999999


Q ss_pred             EEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         240 AREMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       240 a~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      |+|  .|.+    .++++++|.|+|.|
T Consensus       193 A~D--~g~~----~~s~t~~v~I~V~D  213 (213)
T 3qrb_A          193 AAD--LQGE----GLSTTAKAVITVKD  213 (213)
T ss_dssp             EET--GGGT----SCEEEEEEEEEEEC
T ss_pred             EEe--CCCC----CceEEEEEEEEEEC
Confidence            997  4443    68999999999986

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=8e-35  Score=255.34  Aligned_cols=191  Identities=24%  Similarity=0.384  Sum_probs=166.0

Q ss_pred             eEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEec
Q psy4200          19 LVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGV   88 (388)
Q Consensus        19 ~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~   88 (388)
                      ++|+||++ |+.++++.|.|.|   |+.++|+|.++       +.|.|++.+|.|+++++||||....|.  |+|.|.|.
T Consensus         7 ~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~   83 (215)
T 2qvi_A            7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH--LRAHAVDI   83 (215)
T ss_dssp             EEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEET
T ss_pred             EEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEE--EEEEEEEC
Confidence            89999999 8888888888776   68999999863       479999999999999999999999999  99999882


Q ss_pred             CCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEE
Q psy4200          89 DPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGE  168 (388)
Q Consensus        89 ~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~  168 (388)
                      +                                               ...+++.+.++|.|.|+|||+|.|.+..|.++
T Consensus        84 g-----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~  116 (215)
T 2qvi_A           84 N-----------------------------------------------GNQVENPIDIVINVIDMNDNRPEFLHQVWNGS  116 (215)
T ss_dssp             T-----------------------------------------------TCCCEEEEEEEEEEECCCCCCCBCSSSEEEEE
T ss_pred             C-----------------------------------------------CCceeeeEEEEEEEeECCCCCCcccCceeEEE
Confidence            1                                               01245678999999999999999999999999


Q ss_pred             EecCCCCCcEEEEEEEeeCCC--CCCceEEEEEecC-----CCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEEE
Q psy4200         169 IMESAPIGSVVLRVEAKDGDL--AQPRSIYYDLLTN-----PDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRA  240 (388)
Q Consensus       169 v~E~~~~g~~v~~v~A~D~D~--~~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~a  240 (388)
                      |.|+.++|+.|+++.|+|+|.  +.|+.++|+|.++     ..+.|.|++.+|.|++. ++||||.    ...|.|.|+|
T Consensus       117 v~En~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~----~~~y~l~V~a  192 (215)
T 2qvi_A          117 VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK----VQQYTLIIQA  192 (215)
T ss_dssp             ECSSCCTTCEEEECCCBCSSCTTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTT----CSEEEEEEEC
T ss_pred             EeCCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCccc----CCeEEEEEEE
Confidence            999999999999999999998  6899999999864     35799999999999995 7999999    5689999999


Q ss_pred             EEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         241 REMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       241 ~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      +|  .|.+. ..+++++++|.|+|.|
T Consensus       193 ~D--~g~~p-~~~ls~t~~v~I~V~D  215 (215)
T 2qvi_A          193 TD--MEGNP-TYGLSNTATAVITVTD  215 (215)
T ss_dssp             CT--TTTCT-TTSCCCEEEEEEEECC
T ss_pred             EE--CCCCC-CCCcceEEEEEEEEEC
Confidence            97  34320 0147889999999986

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=1.4e-34  Score=254.81  Aligned_cols=192  Identities=25%  Similarity=0.401  Sum_probs=166.0

Q ss_pred             eEEecCCCCC--cEEEEEEEECCCCCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEecC
Q psy4200          19 LVVEENTPPG--TIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVD   89 (388)
Q Consensus        19 ~~v~E~~~~g--t~v~~v~a~D~D~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~~   89 (388)
                      ++|+||.++|  +.|+++.|.|+|. .++|+|.+.       +.|.|++.+|.|+++++||||+...|.  |+|.|.|..
T Consensus         8 ~~V~En~~~g~~~~v~~v~a~D~d~-~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~g   84 (218)
T 3k5r_A            8 ILIPENQRQPFPRDVGKVVDSDRPE-GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQ--LYVETTDAS   84 (218)
T ss_dssp             EEEETTCCSSCCEEEEECBCTTCCT-TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEECSS
T ss_pred             EEEecCCCCCCCEEEEEEEecCCCc-eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEE--EEEEEEECC
Confidence            8999999998  8899999999887 899999742       589999999999999999999999999  888888721


Q ss_pred             CCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEEE
Q psy4200          90 PEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEI  169 (388)
Q Consensus        90 P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~v  169 (388)
                                                                     ...+++.+.++|.|.|+|||+|.|.+..|.+.|
T Consensus        85 -----------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v  117 (218)
T 3k5r_A           85 -----------------------------------------------GKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHV  117 (218)
T ss_dssp             -----------------------------------------------SCEEEEEEEEEEEEECTTCCCCCCCSCSEEEEE
T ss_pred             -----------------------------------------------CCceeeeEEEEEEEEeCCCCCCcccCCceEEEE
Confidence                                                           001457789999999999999999999999999


Q ss_pred             ecCCCCCcEEEEEEEeeCCC--CCCceEEEEEecCC-----CCceEEeCCeeEEEec---ccCCccccCCcccEEEEEEE
Q psy4200         170 MESAPIGSVVLRVEAKDGDL--AQPRSIYYDLLTNP-----DEFFLIDSNTGELKTA---KPLDREILGGTNGVISLTVR  239 (388)
Q Consensus       170 ~E~~~~g~~v~~v~A~D~D~--~~~~~v~y~l~~~~-----~~~F~id~~tG~i~~~---~~LD~E~~~~~~~~~~l~v~  239 (388)
                      .|+.++|+.|+++.|+|+|.  +.|+.++|+|.+..     .++|.|++.+|.|++.   ++||||...  ...|.|.|+
T Consensus       118 ~E~~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~--~~~y~l~V~  195 (218)
T 3k5r_A          118 MEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE--NPKYELIIE  195 (218)
T ss_dssp             ETTCCTTCEEEECCCSCSSSSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCS--CSEEEEEEE
T ss_pred             ECCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccC--CCeEEEEEE
Confidence            99999999999999999999  67899999998632     2689999999999987   699999843  237999999


Q ss_pred             EEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         240 AREMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       240 a~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      |+|  .|+  ..+.++++++|.|+|.|
T Consensus       196 a~D--~gg--~~p~~sst~~v~I~V~D  218 (218)
T 3k5r_A          196 AQD--MAG--LDVGLTGTATATIVIDD  218 (218)
T ss_dssp             EEE--CSS--TTTTCEEEEEEEEEEEC
T ss_pred             EEE--CCC--CCCCeeEEEEEEEEEEC
Confidence            998  441  12368999999999986

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=1.9e-33  Score=244.53  Aligned_cols=187  Identities=24%  Similarity=0.418  Sum_probs=163.8

Q ss_pred             eEEecCCCCC--cEEEEEEEECCCCCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEecC-CCC
Q psy4200          19 LVVEENTPPG--TIVSTLEGVDPEGSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVD-PEG   92 (388)
Q Consensus        19 ~~v~E~~~~g--t~v~~v~a~D~D~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~~-P~f   92 (388)
                      ++|+||.+.|  +.|+++. .|+|.+.-+|+|.++   ++|.|++.||.|+++++||||....|.  |+|.|.|.+ |  
T Consensus         7 ~~V~En~~~~~~~~v~~v~-~D~D~g~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~g~~--   81 (203)
T 3ppe_A            7 MHIREEIDSPLPHHVGKLT-SSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYE--LTAHIIDRRNN--   81 (203)
T ss_dssp             EEEETTCCSSSCEEEEECC-BCCCCTTEEEEEEETTBTTTEEEETTTTEEEESSCCCTTTCCEEE--EEEEEEETTTT--
T ss_pred             EEEEccCCCCCCEEEEEEE-ecCCCCCcEEEEecCCCCCeEEEECCcCEEEECccccccccceEE--EEEEEEECCCC--
Confidence            8999999988  8889988 899854449999964   489999999999999999999999999  999998831 1  


Q ss_pred             ccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEEEecC
Q psy4200          93 SKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIMES  172 (388)
Q Consensus        93 ~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~v~E~  172 (388)
                                                                   ..+++.+.++|.|.|+|||+|.|.+..|.++|.|+
T Consensus        82 ---------------------------------------------~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~  116 (203)
T 3ppe_A           82 ---------------------------------------------RSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEM  116 (203)
T ss_dssp             ---------------------------------------------EECSCCEEEEEEEECCCCCCCEESCSEEEEEEETT
T ss_pred             ---------------------------------------------CcccceEEEEEEEcCCCCCCCCccCCccEEEEecc
Confidence                                                         01456678999999999999999999999999999


Q ss_pred             CCCCcEEEEEEEeeCC---CCCCceEEEEEecCCCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEEEEEccCCCC
Q psy4200         173 APIGSVVLRVEAKDGD---LAQPRSIYYDLLTNPDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMVDGKP  248 (388)
Q Consensus       173 ~~~g~~v~~v~A~D~D---~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~a~D~~~g~~  248 (388)
                      .++|+.|+++.|+|+|   .|.|+.++|+|.++ ..+|.|+ .+|.|+++ ++||||.    ...|.|.|+|+|. .|.|
T Consensus       117 ~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~-~~~F~I~-~tG~i~~~~~~LD~E~----~~~y~l~V~A~D~-~G~p  189 (203)
T 3ppe_A          117 SRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG-NEYFTVD-DSGVIFTARADLDRES----QSAYEIIVKAKDA-LGLT  189 (203)
T ss_dssp             CCTTCEEEECCEECCSCTTSSSTTCEEEEEEES-TTTEEEC-TTSEEEESCSCCCTTT----CSEEEEEEEEEET-TCCC
T ss_pred             CCCCcEEEEEEEEcCCCcCCCCceEEEEEEeCC-CCcEEEe-CCeEEEECCcCCCccc----CCEEEEEEEEEeC-CCCC
Confidence            9999999999999999   47789999999864 4699999 99999998 9999999    5689999999983 2443


Q ss_pred             cCCCCceEEEEEEEEEcc
Q psy4200         249 LQEDQATAFAQVTVTILD  266 (388)
Q Consensus       249 ~~~~~~~~~~~v~I~V~d  266 (388)
                          .++++++|.|+|.|
T Consensus       190 ----~~s~t~~v~I~V~D  203 (203)
T 3ppe_A          190 ----GESSTATVIIRLTD  203 (203)
T ss_dssp             ----CSSSEEEEEEEEEC
T ss_pred             ----CCeEEEEEEEEEEC
Confidence                57899999999986

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=100.00  E-value=4.6e-34  Score=249.40  Aligned_cols=190  Identities=23%  Similarity=0.417  Sum_probs=159.0

Q ss_pred             eEEecCCCCC--cEEEEEEEECCC--CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEecCCC
Q psy4200          19 LVVEENTPPG--TIVSTLEGVDPE--GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEGVDPE   91 (388)
Q Consensus        19 ~~v~E~~~~g--t~v~~v~a~D~D--~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D~~P~   91 (388)
                      ++|+||.+.|  +.|+++ |+|+|  ++.++|+|.++   ++|.|++.+|.|+++++||||....|.  |+|.|.|... 
T Consensus         7 ~~v~En~~~~~~~~v~~~-a~D~D~g~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~a~D~~~-   82 (207)
T 3lnd_A            7 FFLLEEYTGSDYQYVGKL-HSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYI--LRAQAVNRRT-   82 (207)
T ss_dssp             EEEESCBCSSSCEEEEEC-CCTTCCSSTTBCCCCCSSSBTTTEEECTTTCEEEECSCCCGGGCCEEE--C----CBSSS-
T ss_pred             cEEEeecCCCCCEEEEEE-EeCCCCCCceEEEEEECCCCCCeEEEECCceEEEECCCcCcccCCEEE--EEEEEEECCC-
Confidence            8899999855  588888 89999  57899999864   489999999999999999999999999  8888887210 


Q ss_pred             CccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeeeCCcceEEEec
Q psy4200          92 GSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFINSSFSGEIME  171 (388)
Q Consensus        92 f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~~~~~~~~v~E  171 (388)
                                                                   ...+++.+.++|.|.|+|||+|.|.+..|.+.|.|
T Consensus        83 ---------------------------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E  117 (207)
T 3lnd_A           83 ---------------------------------------------GRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPE  117 (207)
T ss_dssp             ---------------------------------------------CCCCSCCCCCEEEEECCSCCCCEESCSEEEEEEES
T ss_pred             ---------------------------------------------CCccccEEEEEEEECccCCCCCccCCCceEEEEeC
Confidence                                                         01245567899999999999999999999999999


Q ss_pred             CCCCCcEEEEEEEeeCCC---CCCceEEEEEecCCCCceEEeCCeeEEEec-ccCCccccCCcccEEEEEEEEEEccCCC
Q psy4200         172 SAPIGSVVLRVEAKDGDL---AQPRSIYYDLLTNPDEFFLIDSNTGELKTA-KPLDREILGGTNGVISLTVRAREMVDGK  247 (388)
Q Consensus       172 ~~~~g~~v~~v~A~D~D~---~~~~~v~y~l~~~~~~~F~id~~tG~i~~~-~~LD~E~~~~~~~~~~l~v~a~D~~~g~  247 (388)
                      +.++|+.|+++.|+|+|.   |.|+.++|+|.++ ..+|.|++.+|.|++. ++||||.    ...|.|.|+|+|  .|.
T Consensus       118 ~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i~~~-~~~F~Id~~tG~i~~~~~~lD~E~----~~~y~l~V~A~D--~g~  190 (207)
T 3lnd_A          118 MADVGTFVVQVTATDADDPTYGNSAKVVYSILQG-QPYFSVESETGIIKTALLNMDREN----REQYQVVIQAKD--MGG  190 (207)
T ss_dssp             SCCTTCEEEECCEECSSCTTSSSTTCCEEEEEES-GGGEEECTTTCEEEECCSSCCC------CCEEEEEEEEES--GGG
T ss_pred             CCCCCCEEEEEEEEeCCCCCCCCCcEEEEEEcCC-CCCEEEcCCCcEEEECcccCCccc----CCEEEEEEEEEE--CCC
Confidence            999999999999999998   7888999999864 4699999999999998 9999999    568999999997  333


Q ss_pred             CcCCCCceEEEEEEEEEcc
Q psy4200         248 PLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       248 ~~~~~~~~~~~~v~I~V~d  266 (388)
                      +  .+.++++++|.|+|.|
T Consensus       191 ~--~~~~s~t~~v~I~V~D  207 (207)
T 3lnd_A          191 Q--MGGLSGTTTVNITLTD  207 (207)
T ss_dssp             C--TTCBEEEEEEEEEEEC
T ss_pred             C--CCCcEeEEEEEEEEeC
Confidence            2  1257999999999986

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=99.97  E-value=1.8e-30  Score=227.12  Aligned_cols=162  Identities=30%  Similarity=0.478  Sum_probs=144.4

Q ss_pred             CCCCeeeCCcce--EEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec-CCCCceEEeCCeeEEEecccCCccccCCcc
Q psy4200         155 NTPPIFINSSFS--GEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTN  231 (388)
Q Consensus       155 d~~P~f~~~~~~--~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~  231 (388)
                      |++|.|.+..|.  ++|+|++++|+.|+++.|+|+|.+   .++|+|.+ +..++|.|++.+|.|++.++||||.    .
T Consensus         3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~~---~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LD~E~----~   75 (210)
T 3mvs_A            3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND---PLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRET----K   75 (210)
T ss_dssp             CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTCC---CCEEEEESHHHHHHEEECTTTCEEEESSCCCTTT----C
T ss_pred             CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCCC---cEEEEEeCCCCCCcEEEeCCCCEEEECCccCCcc----c
Confidence            589999999997  699999999999999999999954   68999986 3457899999999999999999999    5


Q ss_pred             cEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC-------
Q psy4200         232 GVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD-------  304 (388)
Q Consensus       232 ~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D-------  304 (388)
                      ..|.|.|.|+|   +.      ...++.+.|+|.|+|||+|.|....|.+.|+|+.++|+.|+  ++.|+|+|       
T Consensus        76 ~~y~l~v~a~D---~~------~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~--~v~A~D~D~g~n~~v  144 (210)
T 3mvs_A           76 SEFTVEFSVSD---HQ------GVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIF--IVNATDPDLGAGGSV  144 (210)
T ss_dssp             CEEEEEEEEEC---SS------CEEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEE--ECCEECCSSGGGGCE
T ss_pred             ceEEEEEEEEe---CC------CCEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEE--EEEEEeCCCCCCceE
Confidence            68999999996   32      24678999999999999999999999999999999999997  89999999       


Q ss_pred             ------------------------------------eEEEEecCCCceeEEEEEEEEEEEeCCCCC
Q psy4200         305 ------------------------------------LVIAEETHTAEKLSSSATLIVQVTDVNDNV  334 (388)
Q Consensus       305 ------------------------------------~v~~~~~~~~~~~s~~~~v~I~V~dvND~~  334 (388)
                                                          .|.|.|.++.++++++++|+|+|+|+|||+
T Consensus       145 ~Y~i~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          145 LYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD  210 (210)
T ss_dssp             EEEESSCCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEEEEECCCCCC
T ss_pred             EEEEeCCCCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCCCCEEEEEEEEEEEccCCCC
Confidence                                                466777544678999999999999999975

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.97  E-value=8.3e-30  Score=226.58  Aligned_cols=195  Identities=20%  Similarity=0.244  Sum_probs=159.4

Q ss_pred             CCcceEEecCCCCCcEEEEEEEECCC----CCeEEEEEecC--CcEEEeCCeeEEEEc---ccCCCcccceeeEEEEEEE
Q psy4200          15 VNSPLVVEENTPPGTIVSTLEGVDPE----GSKVKYGIYGT--DRFSLDRDSGELRVA---QPLDREYNSTNTSTIVLTL   85 (388)
Q Consensus        15 ~~~~~~v~E~~~~gt~v~~v~a~D~D----~~~i~y~i~~~--~~F~Id~~tG~i~~~---~~lD~e~~~~~~~~l~v~a   85 (388)
                      .+. ++|+|++++|+.|..+.+.|.+    ++.++|+|.+.  .+|.|++.+|.+++.   +.||||....|.  +.+.+
T Consensus        21 ~~~-vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~--~~~~~   97 (242)
T 4apx_B           21 ATI-VAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIH--SIVVQ   97 (242)
T ss_dssp             SEE-EEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESCGGGCEEEETTTTEEEECCTTSCCCCSTTTCCC--EEEEE
T ss_pred             eEE-EEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecCCCceEEECCCCCEEEEEecCCceeccCCCceE--EEEEE
Confidence            355 8999999999999876655433    57899999864  479999999999985   679999988877  44433


Q ss_pred             EecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCC--CceeEEEEEEEEeecCCCCCeeeCC
Q psy4200          86 EGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDG--HHTSKTNVDIRVGDVQNTPPIFINS  163 (388)
Q Consensus        86 ~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~--~~~~~~~v~V~V~dvNd~~P~f~~~  163 (388)
                      .+                                               +.++  +....+.|+|.|.|+|||+|+|.+.
T Consensus        98 v~-----------------------------------------------~~~~~~~~~~~~~V~I~V~DvNDn~P~F~~~  130 (242)
T 4apx_B           98 VQ-----------------------------------------------CVNKKVGTVIYHEVRIVVRDRNDNSPTFKHE  130 (242)
T ss_dssp             EE-----------------------------------------------EEETTTCCEEEEEEEEEEECCCCCCCEESSS
T ss_pred             EE-----------------------------------------------eECCCCCeEEEEEEEEEEEeCCCCCCcccce
Confidence            32                                               2232  3455678999999999999999999


Q ss_pred             cceEEEecCCCCCcEEEE-----EEEeeCCCCCCceEEEEEecCCC-----CceEEeC-CeeEEEecccCCccccCCccc
Q psy4200         164 SFSGEIMESAPIGSVVLR-----VEAKDGDLAQPRSIYYDLLTNPD-----EFFLIDS-NTGELKTAKPLDREILGGTNG  232 (388)
Q Consensus       164 ~~~~~v~E~~~~g~~v~~-----v~A~D~D~~~~~~v~y~l~~~~~-----~~F~id~-~tG~i~~~~~LD~E~~~~~~~  232 (388)
                      .|.++|.|+.++|+.|++     +.|+|+|.|.|+.++|+|..+..     ..|.|++ .+|.|+++++||||.    ..
T Consensus       131 ~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~----~~  206 (242)
T 4apx_B          131 SYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYED----KT  206 (242)
T ss_dssp             CEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTT----CC
T ss_pred             eeeeEeeeccCCCCEEEEeeecccccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhh----CC
Confidence            999999999999999976     77999999999999999986422     4699985 599999999999999    56


Q ss_pred             EEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         233 VISLTVRAREMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       233 ~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      .|.|.|+|+|  .|.+.. .++++.+.|+|+|+.
T Consensus       207 ~y~l~V~A~D--~G~~~~-~~~~~~~~vtVnVe~  237 (242)
T 4apx_B          207 RYYVIIQAND--RAQNLN-ERRTTTTTLTVDLEH  237 (242)
T ss_dssp             EEEEEEEEEE--CCSSGG-GCCEEEEEEEEEEEC
T ss_pred             EEEEEEEEEE--CCcCch-hcccCCceEEEEEee
Confidence            8999999998  565522 246788899998875

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.5e-32  Score=241.61  Aligned_cols=170  Identities=18%  Similarity=0.181  Sum_probs=142.0

Q ss_pred             eeeCCcceEEEecCCCCCcEEEEEEEeeCCCCC--CceEE------EEEecCCCCceEEeCCeeEEEecccCCccccCCc
Q psy4200         159 IFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQ--PRSIY------YDLLTNPDEFFLIDSNTGELKTAKPLDREILGGT  230 (388)
Q Consensus       159 ~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~--~~~v~------y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~  230 (388)
                      .|.+..|.++|+|++++|+.|+++.|+|+|.+.  +..+.      |++......+|.|++.+|.|+++++||||.    
T Consensus         2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~----   77 (246)
T 2x2u_A            2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSS----   77 (246)
T ss_dssp             EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEEECCSEEECTTTCEEEESSCBCHHH----
T ss_pred             CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCCCCCEEEECCCcEEEEECCcCChhH----
Confidence            588899999999999999999999999999864  44454      555544568999999999999999999999    


Q ss_pred             ccEE------------EEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCc----------cCCCcEEEEEeCCCC
Q psy4200         231 NGVI------------SLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPV----------FNRKEYVVHIPEDIP  288 (388)
Q Consensus       231 ~~~~------------~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~----------f~~~~~~~~v~E~~~  288 (388)
                      ...|            .|.|.|+|  .|.+.  ..+++++.|.|+|.|+|||+|.          |.+..|.+.|+|+.+
T Consensus        78 ~~~y~~~~~G~p~~~~~l~V~a~D--~g~~~--~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~  153 (246)
T 2x2u_A           78 WEKLSVRNRGFPLLTVYLKVFLSP--TSLRE--GECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRP  153 (246)
T ss_dssp             HHHHHHTSTTSCCCEEEEEEECC-----------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSC
T ss_pred             hhhhccccCCCcccceEEEEEEEc--CCCCC--CcccceEEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCC
Confidence            4468            99999997  44321  1357788999999999999999          999999999999999


Q ss_pred             CCCeeeeeEEEEeeCC--------------------------------------------eEEEEecCCCceeEEEEEEE
Q psy4200         289 DGSLLPDLDMIVTDSD--------------------------------------------LVIAEETHTAEKLSSSATLI  324 (388)
Q Consensus       289 ~g~~v~~l~l~a~D~D--------------------------------------------~v~~~~~~~~~~~s~~~~v~  324 (388)
                      +|+.|+  ++.|+|+|                                            .|.|.+.++.|+++++++|+
T Consensus       154 ~Gt~v~--~v~A~D~D~g~n~~i~Y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~dg~p~~ss~~~v~  231 (246)
T 2x2u_A          154 PGTFHQ--FRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFP  231 (246)
T ss_dssp             CCEEEE--CSCHHHHHHCTTSCEEEEEESCTTSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC---CCEEEEEEEE
T ss_pred             CCcEEE--EEEEEcCCCCCCcEEEEEEccCCCCCEEEECCcCEEEeCCccCccccceEEEEEEEEecCCCCcceEEEEEE
Confidence            999997  88999988                                            46666644558899999999


Q ss_pred             EEEEeCCCCCCeee
Q psy4200         325 VQVTDVNDNVPSFE  338 (388)
Q Consensus       325 I~V~dvND~~P~f~  338 (388)
                      |+|+|+|||+|+|.
T Consensus       232 I~V~DvNDn~P~F~  245 (246)
T 2x2u_A          232 VTVYDEDDSAPEFE  245 (246)
T ss_dssp             EEEECSSCCSCCCC
T ss_pred             EEEEEeCCCCCccC
Confidence            99999999999996

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=99.96  E-value=1.7e-28  Score=214.75  Aligned_cols=159  Identities=24%  Similarity=0.338  Sum_probs=130.3

Q ss_pred             cceEEEecCC--CCCcEEEEEEEeeCCCCCCceEEEEEecCC-CCceEEeCCeeEEEecccCCccccCCcccEEEEEEEE
Q psy4200         164 SFSGEIMESA--PIGSVVLRVEAKDGDLAQPRSIYYDLLTNP-DEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA  240 (388)
Q Consensus       164 ~~~~~v~E~~--~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~-~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a  240 (388)
                      .+.+.|.|+.  +.|+.|+++ |+|+|.| ++.++|+|.++. ..+|.|++.+|.|++.++||||.    ...|.|.|.|
T Consensus         5 ~~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v~a   78 (215)
T 2a4e_A            5 WNQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE----RAQYTLMAQA   78 (215)
T ss_dssp             CCEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTT----CSEEEEEEEE
T ss_pred             EeeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECCCCCCeEEEECCceEEEECCccCCcc----CCEEEEEEEE
Confidence            4678999994  578888888 8999998 789999998643 46999999999999999999999    5689999999


Q ss_pred             EEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC----------------
Q psy4200         241 REMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD----------------  304 (388)
Q Consensus       241 ~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D----------------  304 (388)
                      +|  .|.+   +++++.+.+.|+|.|+|||+|.|.+..|.+.|+|+.+.|+.|+  ++.|+|+|                
T Consensus        79 ~D--~~~~---~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~--~v~A~D~D~~~~G~n~~i~Y~i~~  151 (215)
T 2a4e_A           79 VD--RDTN---RPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVI--QVTASDADDPTYGNSAKLVYSILE  151 (215)
T ss_dssp             EE--TTTC---CEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEE--ECCEECSSCTTTCSSSCCEEEEEE
T ss_pred             EE--CCCC---CcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEE--EEEEEECCCCCCCCceEEEEEEeC
Confidence            98  3321   2468889999999999999999999999999999999999997  89999987                


Q ss_pred             -------------------------------eEEEEecCCCc--eeEEEEEEEEEEEeCCCCCCe
Q psy4200         305 -------------------------------LVIAEETHTAE--KLSSSATLIVQVTDVNDNVPS  336 (388)
Q Consensus       305 -------------------------------~v~~~~~~~~~--~~s~~~~v~I~V~dvND~~P~  336 (388)
                                                     .|.|.| .|.+  +++++++|+|+|+|+|||+|+
T Consensus       152 ~~~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D-~g~~~~~~s~~~~v~I~V~DvNDn~P~  215 (215)
T 2a4e_A          152 GQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD-MGGHMGGLSGTTKVTITLTDDYKDDDK  215 (215)
T ss_dssp             STTTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEET-TTTCTTCCEEEEEEEEEEEC-------
T ss_pred             CCCcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEE-CCCCCCCceeEEEEEEEEEECCCCCCC
Confidence                                           344444 3433  689999999999999999995

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.94  E-value=1.4e-27  Score=189.29  Aligned_cols=115  Identities=27%  Similarity=0.394  Sum_probs=105.7

Q ss_pred             EEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCC---CCceEEeCCeeEEEecccCCc
Q psy4200         148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNP---DEFFLIDSNTGELKTAKPLDR  224 (388)
Q Consensus       148 V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~---~~~F~id~~tG~i~~~~~LD~  224 (388)
                      ++|.|+|||+|+|.+..|.++|.|+.++|+.|+++.|+|+|.|.|+.++|+|.+..   ..+|.|++.+|.|+++++|||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~   81 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDR   81 (119)
T ss_dssp             CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCT
T ss_pred             CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCc
Confidence            46899999999999999999999999999999999999999999999999998643   368999999999999999999


Q ss_pred             cccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCC
Q psy4200         225 EILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPP  272 (388)
Q Consensus       225 E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P  272 (388)
                      |.    ...|.|.|+|+|  .|.+    .+++++.|.|+|.|+|||+|
T Consensus        82 E~----~~~y~l~V~A~D--~g~p----~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           82 EE----VNQLRFTVMARD--RGQP----PKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             TT----CSEEEEEEEECC--SBTT----BCCEEEEEEEEEECSTTCCC
T ss_pred             cc----CCEEEEEEEEEE--CCCC----CcEEEEEEEEEEEeccCCCC
Confidence            99    568999999997  4544    57899999999999999998

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=99.93  E-value=3.6e-25  Score=193.86  Aligned_cols=126  Identities=23%  Similarity=0.380  Sum_probs=114.9

Q ss_pred             eEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecC-----CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEE
Q psy4200         166 SGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTN-----PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA  240 (388)
Q Consensus       166 ~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a  240 (388)
                      .++|+|+++ |+.++++.|.|.|.+.|+.++|+|.+.     +.++|.|++.+|.|++.++||||.    ...|.|.|.|
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v~a   80 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDREL----IARFHLRAHA   80 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTT----CSEEEEEEEE
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCccc----CCeEEEEEEE
Confidence            568999998 888899999999998899999999863     357999999999999999999999    5589999999


Q ss_pred             EEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200         241 REMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD  304 (388)
Q Consensus       241 ~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D  304 (388)
                      +|  .|.+    .+++++.|.|+|.|+|||+|.|....|.+.|+|+.++|+.|+  ++.|+|+|
T Consensus        81 ~D--~g~~----~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~--~v~A~D~D  136 (215)
T 2qvi_A           81 VD--INGN----QVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVM--TVTAIDAD  136 (215)
T ss_dssp             EE--TTTC----CCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEE--ECCCBCSS
T ss_pred             EE--CCCC----ceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEE--EEEEEeCC
Confidence            98  4543    578899999999999999999999999999999999999997  89999998

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=99.92  E-value=1.4e-24  Score=188.59  Aligned_cols=125  Identities=18%  Similarity=0.252  Sum_probs=110.8

Q ss_pred             ceEEEecCCCCC--cEEEEEEEeeCCCCCCceEEEEEecC-CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEE
Q psy4200         165 FSGEIMESAPIG--SVVLRVEAKDGDLAQPRSIYYDLLTN-PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAR  241 (388)
Q Consensus       165 ~~~~v~E~~~~g--~~v~~v~A~D~D~~~~~~v~y~l~~~-~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~  241 (388)
                      ..++|.||.+.|  ..++++. +|+|.+.+   +|+|.++ ..++|.|++.+|.|++.++||||.    ...|.|.|.|+
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v~a~   76 (203)
T 3ppe_A            5 NRMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEGESANTIFKVQGYDGDIYAFERLDREK----KAEYELTAHII   76 (203)
T ss_dssp             SEEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEETTBTTTEEEETTTTEEEESSCCCTTT----CCEEEEEEEEE
T ss_pred             ccEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEecCCCCCeEEEECCcCEEEECccccccc----cceEEEEEEEE
Confidence            457899999888  8888888 99998875   9999863 456999999999999999999999    56899999999


Q ss_pred             EccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200         242 EMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD  304 (388)
Q Consensus       242 D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D  304 (388)
                      |  .|.+   +.+++++.+.|+|.|+|||+|.|....|.+.|+|+.++|+.|+  ++.|+|+|
T Consensus        77 D--~g~~---~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~--~v~A~D~D  132 (203)
T 3ppe_A           77 D--RRNN---RSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVT--KVTAEDAD  132 (203)
T ss_dssp             E--TTTT---EECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEE--ECCEECCS
T ss_pred             E--CCCC---CcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEE--EEEEEcCC
Confidence            8  4432   2367788999999999999999999999999999999999997  89999998

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=99.92  E-value=1.6e-24  Score=189.83  Aligned_cols=124  Identities=23%  Similarity=0.365  Sum_probs=110.3

Q ss_pred             eEEEecCCC--CCcEEEEEEEeeCCCCCCceEEEEEecC-----CCCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200         166 SGEIMESAP--IGSVVLRVEAKDGDLAQPRSIYYDLLTN-----PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV  238 (388)
Q Consensus       166 ~~~v~E~~~--~g~~v~~v~A~D~D~~~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v  238 (388)
                      .++|.|+.+  .|+.|+++.| |+|.  ++.++|+|.+.     +.++|.|++.+|.|++.++||||.    ...|.|.|
T Consensus         6 ~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v   78 (213)
T 3qrb_A            6 AISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREA----IAKYILYS   78 (213)
T ss_dssp             EEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CSEEEEEE
T ss_pred             CEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCccc----CceEEEEE
Confidence            678999988  6788999999 7775  67999999862     345999999999999999999999    55899999


Q ss_pred             EEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200         239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD  304 (388)
Q Consensus       239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D  304 (388)
                      .|+|  .|.+    .+++++.+.|+|.|+|||+|.|.+..|.+.|+|+.++|+.|+  ++.|+|+|
T Consensus        79 ~a~D--~~~~----~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~--~v~A~D~D  136 (213)
T 3qrb_A           79 HAVS--SNGE----AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVM--KVSATDAD  136 (213)
T ss_dssp             EEEE--TTSC----BCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEE--ECCEECCS
T ss_pred             EEEe--CCCC----cccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEE--EEEEEeCC
Confidence            9998  4543    467789999999999999999999999999999999999997  99999998

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=99.92  E-value=7.3e-25  Score=191.04  Aligned_cols=126  Identities=26%  Similarity=0.407  Sum_probs=105.8

Q ss_pred             eEEEecCCCCC--cEEEEEEEeeCCCCCCceEEEEEecC-CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEEE
Q psy4200         166 SGEIMESAPIG--SVVLRVEAKDGDLAQPRSIYYDLLTN-PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRARE  242 (388)
Q Consensus       166 ~~~v~E~~~~g--~~v~~v~A~D~D~~~~~~v~y~l~~~-~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~D  242 (388)
                      .++|.|+.+.+  +.++++ |+|+|.| ++.++|+|.++ ...+|.|++.+|.|++.++||||.    ...|.|.|.|+|
T Consensus         6 ~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v~a~D   79 (207)
T 3lnd_A            6 QFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREE----KPVYILRAQAVN   79 (207)
T ss_dssp             CEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCSSSBTTTEEECTTTCEEEECSCCCGGG----CCEEEC----CB
T ss_pred             ccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEECCCCCCeEEEECCceEEEECCCcCccc----CCEEEEEEEEEE
Confidence            45899998855  478888 9999998 67899999864 346899999999999999999999    568999999997


Q ss_pred             ccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200         243 MVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD  304 (388)
Q Consensus       243 ~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D  304 (388)
                        .|..   +.+++++.+.|+|.|+|||+|.|.+..|.+.|+|+.++|+.|+  ++.|+|+|
T Consensus        80 --~~~~---~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~--~v~A~D~D  134 (207)
T 3lnd_A           80 --RRTG---RPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVV--QVTATDAD  134 (207)
T ss_dssp             --SSSC---CCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEE--ECCEECSS
T ss_pred             --CCCC---CccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEE--EEEEEeCC
Confidence              3321   2467888999999999999999999999999999999999997  99999988

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=3.2e-25  Score=174.10  Aligned_cols=109  Identities=28%  Similarity=0.441  Sum_probs=99.0

Q ss_pred             EEEeecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec----CCCCceEEeCCeeEEEecccCC
Q psy4200         148 IRVGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT----NPDEFFLIDSNTGELKTAKPLD  223 (388)
Q Consensus       148 V~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~----~~~~~F~id~~tG~i~~~~~LD  223 (388)
                      |+|.|+|||+|.|.+..|.++|+|+.++|+.|+++.|+|+|.|.|+.++|+|.+    ....+|.|++.+|.|+++++||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD   81 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLD   81 (114)
T ss_dssp             CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCC
T ss_pred             CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCC
Confidence            568999999999999999999999999999999999999999999999999975    2357999999999999999999


Q ss_pred             ccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccC
Q psy4200         224 REILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVN  268 (388)
Q Consensus       224 ~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvN  268 (388)
                      ||.    ...|.|.|+|+|  .|.+      +++++|.|+|.|+|
T Consensus        82 ~E~----~~~y~l~V~A~D--~g~~------~~~~~v~I~V~DvN  114 (114)
T 2ee0_A           82 REE----TAIHKVTVLASD--GSST------PARATVTINVTDVN  114 (114)
T ss_dssp             TTT----CSEEEEEEEEES--SSSS------CEEEEEEEEEECCC
T ss_pred             ccc----CcEEEEEEEEEE--CCCC------ceEEEEEEEEEECC
Confidence            999    568999999997  4443      37889999999997

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=6e-25  Score=174.14  Aligned_cols=108  Identities=23%  Similarity=0.332  Sum_probs=96.6

Q ss_pred             CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC-----CcEEEeCCeeEEEEcccCCCc
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT-----DRFSLDRDSGELRVAQPLDRE   72 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~-----~~F~Id~~tG~i~~~~~lD~e   72 (388)
                      |.|+|||+|+|.+..|. ++|+|++++|+.|+++.|+|+|   |+.|+|+|.++     .+|.|++.||.|+++++||||
T Consensus         4 V~DvNDn~P~F~~~~y~-~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~E   82 (119)
T 2yst_A            4 GSSGNDNSPRFEKSVYE-ADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDRE   82 (119)
T ss_dssp             CCCSCCCCCCCSSSEEE-EEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCTT
T ss_pred             EecCCCCCCCcCCCcEE-EEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCcc
Confidence            68999999999999999 9999999999999999999998   58999999864     379999999999999999999


Q ss_pred             ccceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEee
Q psy4200          73 YNSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGD  152 (388)
Q Consensus        73 ~~~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~d  152 (388)
                      ....|.  |+|.|.|.+                                               ...+++.+.|+|.|.|
T Consensus        83 ~~~~y~--l~V~A~D~g-----------------------------------------------~p~~s~~~~v~I~V~D  113 (119)
T 2yst_A           83 EVNQLR--FTVMARDRG-----------------------------------------------QPPKTDKATVVLNIKD  113 (119)
T ss_dssp             TCSEEE--EEEEECCSB-----------------------------------------------TTBCCEEEEEEEEEEC
T ss_pred             cCCEEE--EEEEEEECC-----------------------------------------------CCCcEEEEEEEEEEEe
Confidence            999999  888887721                                               0124678899999999


Q ss_pred             cCCCCC
Q psy4200         153 VQNTPP  158 (388)
Q Consensus       153 vNd~~P  158 (388)
                      +|||+|
T Consensus       114 vNDn~P  119 (119)
T 2yst_A          114 ENDNVP  119 (119)
T ss_dssp             STTCCC
T ss_pred             ccCCCC
Confidence            999998

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=99.91  E-value=1.2e-23  Score=184.88  Aligned_cols=123  Identities=26%  Similarity=0.358  Sum_probs=110.8

Q ss_pred             eEEEecCCCCC--cEEEEEEEeeCCCCCCceEEEEEec-----CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200         166 SGEIMESAPIG--SVVLRVEAKDGDLAQPRSIYYDLLT-----NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV  238 (388)
Q Consensus       166 ~~~v~E~~~~g--~~v~~v~A~D~D~~~~~~v~y~l~~-----~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v  238 (388)
                      .++|.|+.+.|  +.++++.|+|+|.    .++|+|.+     ++.++|.|++.+|.|++.++||||.    ...|.|.|
T Consensus         7 ~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v   78 (218)
T 3k5r_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRET----IATYQLYV   78 (218)
T ss_dssp             CEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CSEEEEEE
T ss_pred             cEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCccc----CCEEEEEE
Confidence            57899999988  8899999998875    68999974     3458999999999999999999999    56899999


Q ss_pred             EEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeeeEEEEeeCC
Q psy4200         239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSD  304 (388)
Q Consensus       239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l~l~a~D~D  304 (388)
                      .|+|  .|.+    .+++++.|.|+|.|+|||+|.|....|.+.|+|++++|+.|+  ++.|+|+|
T Consensus        79 ~a~D--~g~~----~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~--~v~A~D~D  136 (218)
T 3k5r_A           79 ETTD--ASGK----TLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVM--RMTAFDAD  136 (218)
T ss_dssp             EEEC--SSSC----EEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEE--ECCCSCSS
T ss_pred             EEEE--CCCC----ceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEE--EEEEEeCC
Confidence            9997  4443    578999999999999999999999999999999999999997  99999999

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=3.1e-23  Score=162.72  Aligned_cols=84  Identities=23%  Similarity=0.391  Sum_probs=78.2

Q ss_pred             CCccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC---CCeEEEEEec------CCcEEEeCCeeEEEEcccCCC
Q psy4200           1 MEAYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYG------TDRFSLDRDSGELRVAQPLDR   71 (388)
Q Consensus         1 ~~d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~------~~~F~Id~~tG~i~~~~~lD~   71 (388)
                      |.|+|||+|+|.+..|. ++|+|++++|+.|+++.|+|+|   |+.|+|+|.+      ..+|.|++.||.|+++++|||
T Consensus         4 V~DvNDn~P~F~~~~y~-~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD~   82 (114)
T 2ee0_A            4 GSSGNDNRPVFKEGQVE-VHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDR   82 (114)
T ss_dssp             CCCCCCCCCCCSCSEEE-EEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCCT
T ss_pred             EeeCCCCCCCcCCCcEE-EEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCCc
Confidence            68999999999999999 9999999999999999999998   5899999975      247999999999999999999


Q ss_pred             cccceeeEEEEEEEEe
Q psy4200          72 EYNSTNTSTIVLTLEG   87 (388)
Q Consensus        72 e~~~~~~~~l~v~a~D   87 (388)
                      |....|.  |+|.|.|
T Consensus        83 E~~~~y~--l~V~A~D   96 (114)
T 2ee0_A           83 EETAIHK--VTVLASD   96 (114)
T ss_dssp             TTCSEEE--EEEEEES
T ss_pred             ccCcEEE--EEEEEEE
Confidence            9999999  8888877

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=3.2e-22  Score=159.01  Aligned_cols=113  Identities=22%  Similarity=0.300  Sum_probs=101.4

Q ss_pred             cCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecC-----CCCceEEeCCeeEEEecccCCcccc
Q psy4200         153 VQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTN-----PDEFFLIDSNTGELKTAKPLDREIL  227 (388)
Q Consensus       153 vNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~~~LD~E~~  227 (388)
                      .+.+.|.|....|.+.+.|++++|+.|+++. +|+|.+.|+.++|+|.+.     ..++|.|++.+|.|+++++||||. 
T Consensus         5 ~~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~-   82 (123)
T 2yqg_A            5 SSGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREE-   82 (123)
T ss_dssp             SSCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTT-
T ss_pred             ccccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCccc-
Confidence            3578999999999988899999999999999 699999999999999863     357999999999999999999999 


Q ss_pred             CCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCC
Q psy4200         228 GGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNR  276 (388)
Q Consensus       228 ~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~  276 (388)
                         ...|.|.|.|+|  .|.+    .+++++.|.|+|.|+|||+|.|.+
T Consensus        83 ---~~~y~l~V~A~D--~g~p----~~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           83 ---TPFFLLTGYALD--ARGN----NVEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             ---BSEEEEEEEEEC--TTCC----EEEEEECCEEEEECTTCCCCCCCC
T ss_pred             ---CceEEEEEEEEE--CCCC----ceEEEEEEEEEEEEcCCCCCEeCC
Confidence               568999999997  4543    678899999999999999999975

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.85  E-value=2.8e-20  Score=165.13  Aligned_cols=134  Identities=23%  Similarity=0.245  Sum_probs=105.7

Q ss_pred             CcceEEEecCCCCCcEEEEEEE-eeCCCCCCceEEEEEecCCCCceEEeCCeeEEEec---ccCCccccCCcccEEEEEE
Q psy4200         163 SSFSGEIMESAPIGSVVLRVEA-KDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTA---KPLDREILGGTNGVISLTV  238 (388)
Q Consensus       163 ~~~~~~v~E~~~~g~~v~~v~A-~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~---~~LD~E~~~~~~~~~~l~v  238 (388)
                      +.+..+|.|++++|+.+..+.+ .|.|.+.++.++|+|.++...+|.|++.+|.+.+.   +.||||.... -..+.+.+
T Consensus        20 P~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~-~~~~~~~v   98 (242)
T 4apx_B           20 PATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMN-IHSIVVQV   98 (242)
T ss_dssp             SSEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESCGGGCEEEETTTTEEEECCTTSCCCCSTTTC-CCEEEEEE
T ss_pred             CeEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecCCCceEEECCCCCEEEEEecCCceeccCCCc-eEEEEEEE
Confidence            3567899999999999876544 55556778899999997777899999999999874   6799998542 12344445


Q ss_pred             EEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCCCCCeeeee---EEEEeeCC
Q psy4200         239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIPDGSLLPDL---DMIVTDSD  304 (388)
Q Consensus       239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~l---~l~a~D~D  304 (388)
                      .|.+   +..    .....+.|.|.|.|+|||+|.|.+..|.+.|+|+.++|+.|.++   .+.|+|+|
T Consensus        99 ~~~~---~~~----~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D  160 (242)
T 4apx_B           99 QCVN---KKV----GTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDID  160 (242)
T ss_dssp             EEEE---TTT----CCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCS
T ss_pred             EeEC---CCC----CeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccccCC
Confidence            5553   222    35677889999999999999999999999999999999998411   26799999

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.8e-20  Score=148.87  Aligned_cols=108  Identities=21%  Similarity=0.311  Sum_probs=93.4

Q ss_pred             cCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcc
Q psy4200           4 YGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREY   73 (388)
Q Consensus         4 ~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~   73 (388)
                      .+.+.|.|....|. +.+.|++++|+.|++|. +|+|   |+.|+|+|.+.       +.|.|++.||.|+++++||||.
T Consensus         5 ~~r~~p~f~~~~~~-v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~   82 (123)
T 2yqg_A            5 SSGQKRAWITAPVA-LREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREE   82 (123)
T ss_dssp             SSCSCCSSCCCCEE-EESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTT
T ss_pred             ccccCCccCCCCEE-EEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCccc
Confidence            46889999999988 88888999999999999 5887   68999999863       5899999999999999999999


Q ss_pred             cceeeEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeec
Q psy4200          74 NSTNTSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDV  153 (388)
Q Consensus        74 ~~~~~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dv  153 (388)
                      ...|.  |+|.|.|..                                               ...+++.+.|.|.|.|+
T Consensus        83 ~~~y~--l~V~A~D~g-----------------------------------------------~p~~~~~~~v~I~V~Dv  113 (123)
T 2yqg_A           83 TPFFL--LTGYALDAR-----------------------------------------------GNNVEKPLELRIKVLDI  113 (123)
T ss_dssp             BSEEE--EEEEEECTT-----------------------------------------------CCEEEEEECCEEEEECT
T ss_pred             CceEE--EEEEEEECC-----------------------------------------------CCceEEEEEEEEEEEEc
Confidence            99999  888887721                                               00146678999999999


Q ss_pred             CCCCCeeeC
Q psy4200         154 QNTPPIFIN  162 (388)
Q Consensus       154 Nd~~P~f~~  162 (388)
                      |||+|+|.+
T Consensus       114 NDn~P~F~~  122 (123)
T 2yqg_A          114 NDNEPVFTQ  122 (123)
T ss_dssp             TCCCCCCCC
T ss_pred             CCCCCEeCC
Confidence            999999975

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.80  E-value=9.6e-20  Score=141.73  Aligned_cols=98  Identities=23%  Similarity=0.366  Sum_probs=76.1

Q ss_pred             cceEEEecCCCCCcE--EEEEEEeeCCCCCCceEEEEEec-----CCCCceEEeCCeeEEEecccCCccccCCcccEEEE
Q psy4200         164 SFSGEIMESAPIGSV--VLRVEAKDGDLAQPRSIYYDLLT-----NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISL  236 (388)
Q Consensus       164 ~~~~~v~E~~~~g~~--v~~v~A~D~D~~~~~~v~y~l~~-----~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l  236 (388)
                      .|.++|+|+.++|+.  |+++   |.|.+.|+.++|+|.+     +..++|.|++.+|.|++.++||||.    ...|.|
T Consensus         6 ~~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l   78 (110)
T 1ncg_A            6 IPPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDREL----IARFHL   78 (110)
T ss_dssp             CCCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CCEEEE
T ss_pred             eeeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCccc----CCeEEE
Confidence            468899999999995  4554   6787888999999985     2457999999999999999999999    568999


Q ss_pred             EEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCcc
Q psy4200         237 TVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF  274 (388)
Q Consensus       237 ~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f  274 (388)
                      .|.|+|  .|.+    .+++++.|.|+|.|+|||+|.|
T Consensus        79 ~V~A~D--~g~p----~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           79 RAHAVD--INGN----QVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             EEEEEC--TTSC----BCSCCEEEEEEEC---------
T ss_pred             EEEEEE--CCCC----ceeeEEEEEEEEEECCCCCCCC
Confidence            999997  4543    5788999999999999999998

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.76  E-value=1.5e-18  Score=134.92  Aligned_cols=95  Identities=20%  Similarity=0.339  Sum_probs=69.7

Q ss_pred             CCcceEEecCCCCCcE--EEEEEEECCC-CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEE
Q psy4200          15 VNSPLVVEENTPPGTI--VSTLEGVDPE-GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLT   84 (388)
Q Consensus        15 ~~~~~~v~E~~~~gt~--v~~v~a~D~D-~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~   84 (388)
                      .|. ++|+||+++|+.  |+++ +.|.+ |+.|+|+|.++       +.|.|++.||.|+++++||||+...|.  |+|.
T Consensus         6 ~~~-~~v~En~~~gt~~~v~~v-d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~V~   81 (110)
T 1ncg_A            6 IPP-INLPENSRGPFPQELVRI-RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH--LRAH   81 (110)
T ss_dssp             CCC-EEECSSCCCCSSEEEEEC-CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE--EEEE
T ss_pred             eee-EEEeCCCCCCCcEEEEEE-eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEE--EEEE
Confidence            356 999999999994  6666 34443 79999999852       479999999999999999999999999  8888


Q ss_pred             EEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCee
Q psy4200          85 LEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIF  160 (388)
Q Consensus        85 a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f  160 (388)
                      |.|.+                                               ...+++.+.+.|.|.|+|||+|+|
T Consensus        82 A~D~g-----------------------------------------------~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           82 AVDIN-----------------------------------------------GNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             EECTT-----------------------------------------------SCBCSCCEEEEEEEC---------
T ss_pred             EEECC-----------------------------------------------CCceeeEEEEEEEEEECCCCCCCC
Confidence            88721                                               012466789999999999999998

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.76  E-value=1.2e-19  Score=144.25  Aligned_cols=109  Identities=27%  Similarity=0.376  Sum_probs=90.7

Q ss_pred             CcceEEEecCCCCCcEEEEEEEeeCCCCCCceE---EEEEec-CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200         163 SSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSI---YYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV  238 (388)
Q Consensus       163 ~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v---~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v  238 (388)
                      ..|..+|+|+.++|+.|+++ |+|+|.+. +.+   +|+|.+ +..++|.||+.||.|++.++||||........|.|.+
T Consensus        11 ~~~~~~V~E~~~~Gt~V~~v-a~D~d~~~-~~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v   88 (125)
T 1wyj_A           11 ATITYSVLEETDRGSLVGNL-AKDLGLSL-RELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHF   88 (125)
T ss_dssp             CCCCEEECSSCCTTCEEEES-TTTTTCCH-HHHHHTTCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCC
T ss_pred             ceEEEEEECCCCCCCEEEEE-EecCCCCC-CceeeEEEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEEEEE
Confidence            56778999999999999999 99998764 344   899975 4567999999999999999999999632225799999


Q ss_pred             EEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEE
Q psy4200         239 RAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVH  282 (388)
Q Consensus       239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~  282 (388)
                      .|.+   +.|      ...+.|.|.|.|+|||+|.|.+..|.++
T Consensus        89 ~a~~---~~p------~~~~~V~I~V~DvNDN~P~F~~~~y~vs  123 (125)
T 1wyj_A           89 QVLL---KSP------VQFIQGEIQLQDVNDHAPEFMEDESGPS  123 (125)
T ss_dssp             EEEE---TTT------TEEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred             EEEE---CCC------CeEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence            9995   333      2478999999999999999999888754

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.74  E-value=4.4e-19  Score=140.87  Aligned_cols=102  Identities=22%  Similarity=0.284  Sum_probs=85.3

Q ss_pred             cCCCcceEEecCCCCCcEEEEEEEECCCC--CeE---EEEEec---CCcEEEeCCeeEEEEcccCCCccc----ceeeEE
Q psy4200          13 TDVNSPLVVEENTPPGTIVSTLEGVDPEG--SKV---KYGIYG---TDRFSLDRDSGELRVAQPLDREYN----STNTST   80 (388)
Q Consensus        13 ~~~~~~~~v~E~~~~gt~v~~v~a~D~D~--~~i---~y~i~~---~~~F~Id~~tG~i~~~~~lD~e~~----~~~~~~   80 (388)
                      ...+. ++|+|++++|+.|++| |+|.|.  +.+   +|+|.+   .++|.||+.||.|+++++||||+.    ..|.  
T Consensus        10 ~~~~~-~~V~E~~~~Gt~V~~v-a~D~d~~~~~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~--   85 (125)
T 1wyj_A           10 SATIT-YSVLEETDRGSLVGNL-AKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCI--   85 (125)
T ss_dssp             CCCCC-EEECSSCCTTCEEEES-TTTTTCCHHHHHHTTCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCC--
T ss_pred             CceEE-EEEECCCCCCCEEEEE-EecCCCCCCceeeEEEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEE--
Confidence            34677 8999999999999999 999884  345   899975   358999999999999999999999    8888  


Q ss_pred             EEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCee
Q psy4200          81 IVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIF  160 (388)
Q Consensus        81 l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f  160 (388)
                      |.+.|.+.+|                                                  ...+.|.|.|.|+|||+|+|
T Consensus        86 l~v~a~~~~p--------------------------------------------------~~~~~V~I~V~DvNDN~P~F  115 (125)
T 1wyj_A           86 LHFQVLLKSP--------------------------------------------------VQFIQGEIQLQDVNDHAPEF  115 (125)
T ss_dssp             BCCEEEETTT--------------------------------------------------TEEECCCEEECCCCCCCCCC
T ss_pred             EEEEEEECCC--------------------------------------------------CeEEEEEEEEEEccCCCCcC
Confidence            7777766322                                                  23568899999999999999


Q ss_pred             eCCcceEE
Q psy4200         161 INSSFSGE  168 (388)
Q Consensus       161 ~~~~~~~~  168 (388)
                      .+..|.++
T Consensus       116 ~~~~y~vs  123 (125)
T 1wyj_A          116 MEDESGPS  123 (125)
T ss_dssp             CCCCCCCC
T ss_pred             CCcEEEEe
Confidence            99888654

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.68  E-value=1.5e-16  Score=120.64  Aligned_cols=90  Identities=23%  Similarity=0.222  Sum_probs=78.7

Q ss_pred             ceEEEecCCC--CCcEEEEEEEeeCCCCCCceEEEEEecC-CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEE
Q psy4200         165 FSGEIMESAP--IGSVVLRVEAKDGDLAQPRSIYYDLLTN-PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAR  241 (388)
Q Consensus       165 ~~~~v~E~~~--~g~~v~~v~A~D~D~~~~~~v~y~l~~~-~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~  241 (388)
                      +.++|+||.+  .|+.|+++. +|+|.| |+.++|+|.+. ..+.|.|++.+|.|++.++||||.    ...|.|.|.|+
T Consensus         6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~V~A~   79 (99)
T 1zvn_A            6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREE----RSQYTLRAQAL   79 (99)
T ss_dssp             CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTT----CSEEEEEEEEE
T ss_pred             cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCcc----CCeEEEEEEEE
Confidence            5678999976  689999999 999999 99999999873 346899999999999999999999    56899999999


Q ss_pred             EccCC-CCcCCCCceEEEEEEEEEcc
Q psy4200         242 EMVDG-KPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       242 D~~~g-~~~~~~~~~~~~~v~I~V~d  266 (388)
                      |  .| .+    ++++.+.|.|+|.|
T Consensus        80 D--~G~~p----~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           80 D--RRTGR----PMEPESEFIIKIQD   99 (99)
T ss_dssp             E--TTTCC----BSSCCEEEEEEEEC
T ss_pred             E--CCCCC----CcceeEEEEEEEeC
Confidence            8  55 23    57888999999986

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.68  E-value=1.6e-16  Score=120.42  Aligned_cols=91  Identities=23%  Similarity=0.255  Sum_probs=77.2

Q ss_pred             ceEEEecCCC--CCcEEEEEEEeeCCCCCCceEEEEEecC-CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEEE
Q psy4200         165 FSGEIMESAP--IGSVVLRVEAKDGDLAQPRSIYYDLLTN-PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRAR  241 (388)
Q Consensus       165 ~~~~v~E~~~--~g~~v~~v~A~D~D~~~~~~v~y~l~~~-~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a~  241 (388)
                      +.++|.||.+  .|+.|+++. +|+|.| |+.++|+|.++ ..+.|.||+.+|.|++.++||||.    ...|.|.|.|+
T Consensus         5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v~A~   78 (98)
T 1zxk_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE----KAEYTLTAQAV   78 (98)
T ss_dssp             CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTT----CSEEEEEEEEE
T ss_pred             ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcC----CCeEEEEEEEE
Confidence            5678999984  899999997 999999 99999999874 446899999999999999999999    56899999999


Q ss_pred             EccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         242 EMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       242 D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      |  .|.+   +++++++.|.|.|.|
T Consensus        79 D--~g~~---~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           79 D--FETN---KPLEPPSEFIIKVQD   98 (98)
T ss_dssp             E--TTTC---CBSSCCEEEEEEECC
T ss_pred             E--CCCC---CCcceeEEEEEEEEC
Confidence            8  5542   257888999999986

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.64  E-value=1e-15  Score=116.32  Aligned_cols=88  Identities=26%  Similarity=0.314  Sum_probs=77.2

Q ss_pred             ceEEEecCCCC--CcEEEEEEEeeCCCCCCceEEEEEec-----CCCCceEEeCCeeEEEecccCCccccCCcccEEEEE
Q psy4200         165 FSGEIMESAPI--GSVVLRVEAKDGDLAQPRSIYYDLLT-----NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLT  237 (388)
Q Consensus       165 ~~~~v~E~~~~--g~~v~~v~A~D~D~~~~~~v~y~l~~-----~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~  237 (388)
                      ..++|+||.++  |+.|++|.|+|+|.    .++|+|.+     ++.+.|.|++.+|.|++.++||||.    ...|.|.
T Consensus         5 ~~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~   76 (99)
T 3k6d_A            5 PSISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREA----IPSYQLQ   76 (99)
T ss_dssp             CCEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CCEEEEE
T ss_pred             CcEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCccc----CceEEEE
Confidence            45789999999  99999999999997    68999974     2357999999999999999999999    6689999


Q ss_pred             EEEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         238 VRAREMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       238 v~a~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      |.|+|  .|.+    .+++.+.|.|+|.|
T Consensus        77 V~A~D--~g~~----~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           77 VETTD--ENGK----TIEGPVDLEILVID   99 (99)
T ss_dssp             EEEEC--TTCC----EEEEEEEEEEEEEC
T ss_pred             EEEEE--CCCC----ceeeEEEEEEEEEC
Confidence            99997  4543    67889999999986

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.62  E-value=2.7e-15  Score=114.27  Aligned_cols=87  Identities=23%  Similarity=0.254  Sum_probs=76.4

Q ss_pred             eEEEecCCCC--CcEEEEEEEeeCCCCCCceEEEEEec-----CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200         166 SGEIMESAPI--GSVVLRVEAKDGDLAQPRSIYYDLLT-----NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV  238 (388)
Q Consensus       166 ~~~v~E~~~~--g~~v~~v~A~D~D~~~~~~v~y~l~~-----~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v  238 (388)
                      .++|.||.+.  |+.|++|.|+|+|.    .++|+|.+     ++.+.|.||+.+|.|++.++||||.    ...|.|.|
T Consensus         7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~V   78 (100)
T 3k6f_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRET----IATYQLYV   78 (100)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CSEEEEEE
T ss_pred             cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcC----CCEEEEEE
Confidence            5689999998  89999999999997    58999975     2347999999999999999999999    56899999


Q ss_pred             EEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         239 RAREMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      .|+|  .|.+    .+++.++|.|+|.|
T Consensus        79 ~A~D--~g~p----~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           79 ETTD--ASGK----TLEGPVPLEVIVID  100 (100)
T ss_dssp             EEEC--TTCC----EEEEEEEEEEEEEC
T ss_pred             EEEE--CCCC----cccceEEEEEEEEC
Confidence            9997  4544    67889999999986

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.62  E-value=4.2e-15  Score=113.01  Aligned_cols=87  Identities=21%  Similarity=0.291  Sum_probs=76.4

Q ss_pred             eEEEecCCCCC--cEEEEEEEeeCCCCCCceEEEEEec-----CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200         166 SGEIMESAPIG--SVVLRVEAKDGDLAQPRSIYYDLLT-----NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV  238 (388)
Q Consensus       166 ~~~v~E~~~~g--~~v~~v~A~D~D~~~~~~v~y~l~~-----~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v  238 (388)
                      .++|.||.+.|  +.|++|.|+|+|.    .++|+|.+     ++.+.|.||+.+|.|++.++||||.    ...|.|.|
T Consensus         6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~v   77 (99)
T 3k6i_A            6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREA----IANYELEV   77 (99)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CCEEEEEE
T ss_pred             cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCcc----CCEEEEEE
Confidence            46899999987  8999999999997    79999985     2347999999999999999999999    56899999


Q ss_pred             EEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         239 RAREMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      .|+|  .|.+    .+++.+++.|.|.|
T Consensus        78 ~A~D--~g~~----~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           78 EVTD--LSGK----IIDGPVRLDISVID   99 (99)
T ss_dssp             EEEE--TTSC----EEEEEEEEEEEEEC
T ss_pred             EEEE--CCCC----ceeeeEEEEEEEEC
Confidence            9998  5554    67899999999986

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.61  E-value=2.7e-15  Score=113.98  Aligned_cols=66  Identities=26%  Similarity=0.368  Sum_probs=61.7

Q ss_pred             eEEecCCCC--CcEEEEEEEECCCCCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200          19 LVVEENTPP--GTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG   87 (388)
Q Consensus        19 ~~v~E~~~~--gt~v~~v~a~D~D~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D   87 (388)
                      ++|+||.++  |+.|++|.|+|+|. .++|+|.+.       +.|.||+.||.|++.++||||+...|.  |+|.|.|
T Consensus         7 ~~V~En~~~~~g~~v~~v~A~D~D~-~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~V~A~D   81 (99)
T 3k6d_A            7 ISIPENQRIPFPKIVGRVVVSDRIP-GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQ--LQVETTD   81 (99)
T ss_dssp             EEEETTCCSCSSEEEEECBCSSCCT-TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE--EEEEEEC
T ss_pred             EEEeCCCCCCCCcEEEEEEEECCCC-cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEE--EEEEEEE
Confidence            899999999  99999999999998 899999852       589999999999999999999999999  8888887

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.60  E-value=5.8e-15  Score=112.24  Aligned_cols=66  Identities=23%  Similarity=0.413  Sum_probs=61.7

Q ss_pred             eEEecCCCCC--cEEEEEEEECCCCCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200          19 LVVEENTPPG--TIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG   87 (388)
Q Consensus        19 ~~v~E~~~~g--t~v~~v~a~D~D~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D   87 (388)
                      ++|+||.+.|  +.|++|.|+|+|. .|+|+|.+.       +.|.||+.||.|++.++||||+...|.  |+|.|.|
T Consensus         7 ~~v~EN~~~g~~~~v~~V~A~D~D~-~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~A~D   81 (99)
T 3k6i_A            7 ILIPENQRPPFPRSVGKVIRSEGTE-GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYE--LEVEVTD   81 (99)
T ss_dssp             EEEETTCCSSSCEEEEECEETTCCS-SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE--EEEEEEE
T ss_pred             EEEeCCCCCCCCeEEEEEEEEcCCC-eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEE--EEEEEEE
Confidence            8999999997  8999999999999 999999852       489999999999999999999999999  9988888

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.60  E-value=4.1e-15  Score=113.21  Aligned_cols=66  Identities=21%  Similarity=0.368  Sum_probs=61.3

Q ss_pred             eEEecCCCC--CcEEEEEEEECCCCCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200          19 LVVEENTPP--GTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG   87 (388)
Q Consensus        19 ~~v~E~~~~--gt~v~~v~a~D~D~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D   87 (388)
                      ++|+||.+.  |+.|++|.|+|+|. .|+|+|.+.       +.|.||+.||.|++.++||||+...|.  |+|.|.|
T Consensus         8 ~~V~EN~~~~~g~~v~~V~A~D~D~-~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~V~A~D   82 (100)
T 3k6f_A            8 ILIPENQRQPFPRDVGKVVDSDRPE-GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQ--LYVETTD   82 (100)
T ss_dssp             EEEETTCCSSSCEEEEECEETTCCT-TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEC
T ss_pred             EEEeCCCCCCCCcEEEEEEEEcCCC-CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEE--EEEEEEE
Confidence            899999998  89999999999998 899999852       489999999999999999999999999  8888887

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.59  E-value=2.5e-15  Score=115.43  Aligned_cols=89  Identities=19%  Similarity=0.295  Sum_probs=75.1

Q ss_pred             eEEEecCCC--CCcEEEEEEEeeCCCCCCceEEEEEecCC-----CCceEEeCCeeEEEecccCCccccCCcccEEEEEE
Q psy4200         166 SGEIMESAP--IGSVVLRVEAKDGDLAQPRSIYYDLLTNP-----DEFFLIDSNTGELKTAKPLDREILGGTNGVISLTV  238 (388)
Q Consensus       166 ~~~v~E~~~--~g~~v~~v~A~D~D~~~~~~v~y~l~~~~-----~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v  238 (388)
                      .++|+||.+  .|+.|+++.|   |.+.|+.++|+|.+..     .++|.||+.+|.|++.++||||.    ...|.|.|
T Consensus        10 ~~~V~En~~~~~~~~v~~v~A---d~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~----~~~y~l~V   82 (105)
T 2omz_B           10 PISCPENEKGPFPKNLVQIKS---NKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRER----IATYTLFS   82 (105)
T ss_dssp             CCCEESSCCSSSSEEEEECEE---GGGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CCEEEEEE
T ss_pred             CEEEeCCCCCCCCcEEEEEEC---CCCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCC----CCeEEEEE
Confidence            468999998  5889999999   3356899999998632     36899999999999999999999    56899999


Q ss_pred             EEEEccCCCCcCCCCceEEEEEEEEEccc
Q psy4200         239 RAREMVDGKPLQEDQATAFAQVTVTILDV  267 (388)
Q Consensus       239 ~a~D~~~g~~~~~~~~~~~~~v~I~V~dv  267 (388)
                      .|+|  .|.+    .+++++.|.|.|.|+
T Consensus        83 ~A~D--~g~p----~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           83 HAVS--SNGN----AVEDPMEILITVTDQ  105 (105)
T ss_dssp             EEEC--TTSC----BSSCCEEEEEEEEC-
T ss_pred             EEEE--CCCC----ceeeEEEEEEEEEeC
Confidence            9997  5554    678889999999985

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.56  E-value=6.7e-15  Score=113.05  Aligned_cols=67  Identities=28%  Similarity=0.392  Sum_probs=60.4

Q ss_pred             eEEecCCC--CCcEEEEEEEECCCCCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200          19 LVVEENTP--PGTIVSTLEGVDPEGSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG   87 (388)
Q Consensus        19 ~~v~E~~~--~gt~v~~v~a~D~D~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D   87 (388)
                      ++|+||++  .|+.|+++.|.|..|+.|+|+|.++       +.|.||+.||.|++.++||||+...|.  |+|.|.|
T Consensus        11 ~~V~En~~~~~~~~v~~v~Ad~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~--l~V~A~D   86 (105)
T 2omz_B           11 ISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYT--LFSHAVS   86 (105)
T ss_dssp             CCEESSCCSSSSEEEEECEEGGGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE--EEEEEEC
T ss_pred             EEEeCCCCCCCCcEEEEEECCCCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEE--EEEEEEE
Confidence            78999999  5889999999655589999999863       379999999999999999999999999  8888888

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.56  E-value=2e-14  Score=108.96  Aligned_cols=66  Identities=27%  Similarity=0.354  Sum_probs=61.2

Q ss_pred             eEEecCCC--CCcEEEEEEEECCC--CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200          19 LVVEENTP--PGTIVSTLEGVDPE--GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG   87 (388)
Q Consensus        19 ~~v~E~~~--~gt~v~~v~a~D~D--~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D   87 (388)
                      ++|+||.+  .|+.|++|. +|+|  |+.|+|+|.++   +.|.||+.+|.|++.++||||+...|.  |+|.|+|
T Consensus         8 ~~v~En~~~~~g~~v~~v~-~D~D~gNg~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~V~A~D   80 (99)
T 1zvn_A            8 FFVLEEYTGTDPLYVGKLH-SDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYT--LRAQALD   80 (99)
T ss_dssp             EEEEGGGCSSSCEEEEECC-BTTCCSSSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEE
T ss_pred             EEEECCCCCCCCcEEEEEE-ECCCCCCCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCccCCeEE--EEEEEEE
Confidence            89999976  689999999 9999  79999999874   369999999999999999999999999  9999998

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.55  E-value=2e-14  Score=108.77  Aligned_cols=68  Identities=25%  Similarity=0.392  Sum_probs=60.4

Q ss_pred             CcceEEecCCC--CCcEEEEEEEECCC--CCeEEEEEecC---CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200          16 NSPLVVEENTP--PGTIVSTLEGVDPE--GSKVKYGIYGT---DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG   87 (388)
Q Consensus        16 ~~~~~v~E~~~--~gt~v~~v~a~D~D--~~~i~y~i~~~---~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D   87 (388)
                      +. ++|+||.+  .|+.|+++. +|+|  |+.|+|+|.+.   +.|.||+.||.|++.++||||+...|.  |+|.|.|
T Consensus         5 ~~-~~v~En~~~p~~~~v~~v~-~D~D~gN~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~v~A~D   79 (98)
T 1zxk_A            5 NQ-MFVLEEFSGPEPILVGRLH-TDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYT--LTAQAVD   79 (98)
T ss_dssp             CE-EEECGGGCSSSCEEEEECC-BCCCCC--CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEE
T ss_pred             ce-EEEECCCCCCCCeEEEEEE-ECCCCCCCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcCCCeEE--EEEEEEE
Confidence            44 89999995  899999997 9998  58999999864   379999999999999999999999999  9999998

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.49  E-value=4.8e-15  Score=113.47  Aligned_cols=98  Identities=24%  Similarity=0.333  Sum_probs=75.7

Q ss_pred             CcceEEEecCCCCCcEEEEEEEeeCCCCCC--ceEEEEEec-CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEE
Q psy4200         163 SSFSGEIMESAPIGSVVLRVEAKDGDLAQP--RSIYYDLLT-NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVR  239 (388)
Q Consensus       163 ~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~--~~v~y~l~~-~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~  239 (388)
                      ..+..+|+|+.++|+.|+++ |.|+|.+.+  +.++|+|.+ +...+|.|++.||.|++.++||||........|.+.+.
T Consensus         3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~   81 (103)
T 1wuz_A            3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLE   81 (103)
T ss_dssp             CEEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEE
T ss_pred             eeEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEEEEECCcCccccccCCCCcEEEEEE
Confidence            45678999999999999999 999886532  357899975 45689999999999999999999986422233455555


Q ss_pred             EEEccCCCCcCCCCceEEEEEEEEEcccCCC
Q psy4200         240 AREMVDGKPLQEDQATAFAQVTVTILDVNDS  270 (388)
Q Consensus       240 a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~  270 (388)
                      +..   +.|     . ..+.+.|+|.|+|||
T Consensus        82 v~~---~~p-----~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           82 VIV---DRP-----L-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             EEE---TTT-----T-EEEEEEEEEECCSCC
T ss_pred             EEE---CCC-----C-EEEEEEEEEEEcCCC
Confidence            542   222     2 378999999999997

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.37  E-value=4.7e-14  Score=107.87  Aligned_cols=59  Identities=20%  Similarity=0.213  Sum_probs=51.3

Q ss_pred             CCcceEEecCCCCCcEEEEEEEECCCC-----CeEEEEEec---CCcEEEeCCeeEEEEcccCCCcccc
Q psy4200          15 VNSPLVVEENTPPGTIVSTLEGVDPEG-----SKVKYGIYG---TDRFSLDRDSGELRVAQPLDREYNS   75 (388)
Q Consensus        15 ~~~~~~v~E~~~~gt~v~~v~a~D~D~-----~~i~y~i~~---~~~F~Id~~tG~i~~~~~lD~e~~~   75 (388)
                      .+. ++|+|++++|+.|++| |.|.|.     ..++|+|.+   ..+|.||+.||.|+++++||||+.+
T Consensus         4 ~~~-~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~~   70 (103)
T 1wuz_A            4 QIH-YSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELC   70 (103)
T ss_dssp             EEE-EEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTEEEECSCCSHHHHC
T ss_pred             eEE-EEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEEEEECCcCcccccc
Confidence            356 8999999999999999 998873     368999975   3589999999999999999999863

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=94.98  E-value=0.044  Score=44.05  Aligned_cols=77  Identities=16%  Similarity=0.228  Sum_probs=62.3

Q ss_pred             CCCCeeccCCCcceEEecCCCCCcEEEEEEEECCCC-CeEEEEEecCCcEEEeCCeeEEEEcccCCCcccceeeEEEEEE
Q psy4200           6 NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG-SKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTIVLT   84 (388)
Q Consensus         6 d~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~-~~i~y~i~~~~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~   84 (388)
                      -+-|-|.+..|. ..++-+...|..|++|.-.|..+ ..+.|....+..|.|++ .|.|++.+++-.-. ....  +.|.
T Consensus        31 ~C~pGF~~~~~~-~~vp~~l~~g~~lgkV~F~dC~g~~~~~~~ssDp~dFkV~~-DGtVya~r~v~L~~-~~~~--F~V~  105 (159)
T 1op4_A           31 LCKTGFPEDVYS-AVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDE-DGTVYAVRSFPLTA-EQAK--FLIY  105 (159)
T ss_dssp             CCCCBCCSCEEE-ECCCCSSCSSCCEEECCCBCCSSCCCEEEECCCSSEEEEET-TTEEEEESCCSCSS-SCEE--EEEE
T ss_pred             cccCCcCcceeE-EeccccccCCceeceeecccCCCCCceeEEcCCCCCeEEeC-CCcEEEecceeecC-CCcE--EEEE
Confidence            467999999996 99999999999999999999875 56778765555899998 79999999864322 2235  8899


Q ss_pred             EEe
Q psy4200          85 LEG   87 (388)
Q Consensus        85 a~D   87 (388)
                      |.|
T Consensus       106 a~D  108 (159)
T 1op4_A          106 AQD  108 (159)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            998

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=83.49  E-value=5.1  Score=37.68  Aligned_cols=77  Identities=25%  Similarity=0.389  Sum_probs=41.6

Q ss_pred             CCCCCeeccCCC---cceEEecCCCCCcEEEEEEE---ECCCCCeEEEEEe--cCC-----cEEEe-CCeeEEEEcccCC
Q psy4200           5 GNSPPSFTTDVN---SPLVVEENTPPGTIVSTLEG---VDPEGSKVKYGIY--GTD-----RFSLD-RDSGELRVAQPLD   70 (388)
Q Consensus         5 nd~~P~F~~~~~---~~~~v~E~~~~gt~v~~v~a---~D~D~~~i~y~i~--~~~-----~F~Id-~~tG~i~~~~~lD   70 (388)
                      .|++|+-.-..-   .+  +.-....|..| ++.|   +|+||+.++|+..  .+.     ...|. ..+..+++.-+-+
T Consensus       330 aNhaPVa~iag~~g~~p--~~~~v~aG~tV-tLdAs~SsDPDGD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~  406 (437)
T 2yhg_A          330 ANHHPVPVVNNDANEAV--MYLNASAGSTV-SLDASGSSDPDGDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSN  406 (437)
T ss_dssp             SCCCCBCCBTTBCCSSC--EEEEECTTCEE-EEECTTCBCTTCCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTT
T ss_pred             CCCCCEEEecCCCcccc--cceEecCCCEE-EEEeeeeeCCCCCeEEEEEEEeCCCCccccceEeecCCCceEEEEeCCC
Confidence            467887763221   10  11223445554 4555   4999999999997  222     44553 3344555554433


Q ss_pred             CcccceeeEEEEEEEEe
Q psy4200          71 REYNSTNTSTIVLTLEG   87 (388)
Q Consensus        71 ~e~~~~~~~~l~v~a~D   87 (388)
                       +....+.  |+++|+|
T Consensus       407 -~~~~tl~--f~LtVTD  420 (437)
T 2yhg_A          407 -AGGKDIH--ILLTLRD  420 (437)
T ss_dssp             -CTTCEEE--EEEEEEE
T ss_pred             -CCCcEEE--EEEEEEe
Confidence             2344555  6666666

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=82.46  E-value=19  Score=29.56  Aligned_cols=117  Identities=16%  Similarity=0.145  Sum_probs=63.9

Q ss_pred             ccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCCcEEEEEeCCCC---CCCeeeeeEEEEeeCC-eE
Q psy4200         231 NGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRKEYVVHIPEDIP---DGSLLPDLDMIVTDSD-LV  306 (388)
Q Consensus       231 ~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~---~g~~v~~l~l~a~D~D-~v  306 (388)
                      .+.|.|+++|+|. .|.      .+....+.|.|.+  ..+|..     .+.-+.+..   .|..+. |+..|+|.| .+
T Consensus        60 ~G~htlta~A~D~-aGn------~s~s~~v~vtV~~--~~~Ptv-----~itsP~~g~~~~~~~~vt-l~~~AsD~~g~V  124 (190)
T 3pdd_A           60 VGAYNLKAVAVLS-DGR------RIESPVTPVLVKV--IVKPTV-----KLTAPKSNVVAYGNEFLK-ITATASDSDGKI  124 (190)
T ss_dssp             SEEEEEEEEEEET-TSC------EEECCCEEEEEEC--CCCCEE-----EEEECCTTCCCBTTSEEE-EEEEEECSSSCE
T ss_pred             CccEEEEEEEEEC-CCC------EeeecceeEEecc--CCCCce-----eecCCCCCcEEecCCeEE-EEEEEECCCCcE
Confidence            4579999999985 343      2233456777765  467764     234444432   355553 566677665 11


Q ss_pred             EEEecCCCceeEEEEEEEEEEEeCCCCCCeeeccceEEEEecCCCCCcEEEEEEEEcCCCCCCCceeEEEEEEc
Q psy4200         307 IAEETHTAEKLSSSATLIVQVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLG  380 (388)
Q Consensus       307 ~~~~~~~~~~~s~~~~v~I~V~dvND~~P~f~~~~y~~~v~e~~~~g~~v~~v~a~D~D~~~~~~~~i~ysi~~  380 (388)
                      -..+---+..+-.+        +  .      ...|.+...-  ..|..-++++|+|.........++++.+..
T Consensus       125 ~~Ve~~~dg~~v~t--------~--t------~~~y~~~~~~--~~G~~tl~a~A~D~aGn~s~s~~vtvtv~~  180 (190)
T 3pdd_A          125 SRVDFLVDGEVIGS--------D--R------EAPYEYEWKA--VEGNHEISVIAYDDDDAASTPDSVKIFVKQ  180 (190)
T ss_dssp             EEEEEEETTEEEEE--------E--C------SSSEEEEEEC--CSEEEEEEEEEEETTCCBCCCEEEEEEEBC
T ss_pred             EEEEEEECCEEEec--------c--c------CCCEEEEEec--CCeeEEEEEEEEECCCCEEecceEEEEECC
Confidence            11110000111110        1  1      1345555554  789999999999998655443446666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	388
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	9e-15
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	8e-06
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	1e-10
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	3e-05
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	6e-05
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	6e-09
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	0.002
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	2e-07
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	1e-04
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	0.004
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	1e-05
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	8e-04
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	0.002
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	2e-05
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	0.003
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	0.004
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	3e-04
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	4e-04
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	4e-04
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	5e-04
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	0.002
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	0.002

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 67.7 bits (164), Expect = 9e-15
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTG 214
           N  P F+ +    ++ E    G  ++ + A+D D  Q + + Y +  +P  +  ++ + G
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 60

Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDV 267
            +     LDRE     N   ++ +   +  DG        T    + + +LDV
Sbjct: 61  IVTGNGNLDRESEYVKNNTYTVIMLVTD--DGVS----VGTGTGTLILHVLDV 107

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 42.3 bits (98), Expect = 8e-06
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 6  NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG-----SKVKYGIYGTDRFSLDRDS 60
          N  P F   V+  + V E+   G  + +L   DP+           G       ++++D+
Sbjct: 1  NEAPFFVPAVSR-VDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDN 59

Query: 61 GELRVAQPLDREYNSTNTSTIVLTLEGVD 89
          G +     LDRE      +T  + +   D
Sbjct: 60 GIVTGNGNLDRESEYVKNNTYTVIMLVTD 88

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 14/143 (9%), Positives = 36/143 (25%), Gaps = 18/143 (12%)

Query: 150 VGDVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLI 209
            G++      F    +S  + +    G  +L V+  + +  +            +     
Sbjct: 3   SGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYES-----SEPADFK 57

Query: 210 DSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVND 269
               G +   +                 + A++        E Q      V ++      
Sbjct: 58  VDEDGTVYAVRSFPLT-----AEQAKFLIYAQDK-------ETQEKWQVAVNLSREPTLT 105

Query: 270 SPPVF-NRKEYVVHIPEDIPDGS 291
             P+    +   +  P  +   S
Sbjct: 106 EEPMKEPHEIEEIVFPRQLAKHS 128

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 3/43 (6%), Positives = 13/43 (30%)

Query: 329 DVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGT 371
           ++      F  + Y+  + +    G  +  +   + +      
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQ 47

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 11/100 (11%), Positives = 29/100 (29%), Gaps = 2/100 (2%)

Query: 266 DVNDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIV 325
           ++      F    Y   +P+D+ +G  L  L++  ++ +     +  ++E          
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPL--LNVKFSNCNRKRKVQYESSEPADFKVDEDG 62

Query: 326 QVTDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSD 365
            V  V     + E   +     +          +      
Sbjct: 63  TVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREP 102

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 51.5 bits (122), Expect = 6e-09
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSI--YYDLLTNPDEFFLIDSNTG 214
            PIF   +++  + E+   G  V R+   D D+    +    Y +  N   FF I ++  
Sbjct: 5   APIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPE 63

Query: 215 ELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDV 267
             +      + +         L +      + +P      T+ A VTVT+ DV
Sbjct: 64  SNQGILTTAKGLDFELRKQYVLQITVE---NAEPFSVPLPTSTATVTVTVEDV 113

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 331 NDNVPSFELNAYTGNVLETAQAGTSITTITALDSDG 366
           NDN P F+   YT  V E    G  +  ++  D D 
Sbjct: 2   NDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDM 36

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRS-------IYYDLLTNPDEFFLI 209
            P F++  ++G + E +  G+ V+ V A D D     +       +     T     F I
Sbjct: 4   RPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTI 63

Query: 210 DSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
           ++ TG++ T                +L ++A    D +       +  A   +T+ D
Sbjct: 64  NNETGDIITVAAGLDR---EKVQQYTLIIQAT---DMEGNPTYGLSNTATAVITVTD 114

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 331 NDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGIVYELLGE 381
           NDN P F    + G+V E ++ GT + T+TA+D+D  +   G + Y ++ +
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQ 51

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 268 NDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQV 327
           ND+ P F  + +   +PE    G+ +    +   D+D   A       ++ S A      
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVM--TVTAIDADDPNALNGMLRYRIVSQAPSTPSP 58

Query: 328 TDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDG 366
                N  + ++      +        ++  I A D +G
Sbjct: 59  NMFTINNETGDIITVAAGLDREKVQQYTL-IIQATDMEG 96

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEA---KDGDLAQPRSIYYDLLTNPDE-----FFL 208
            P F    F G + E A  G+ V++V A    D       +I Y +++   E      F 
Sbjct: 4   RPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFT 63

Query: 209 IDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
           ++ +TG +             +    +L V+A ++  G+ L     +  A+  +T+ D
Sbjct: 64  VNRDTGVISVLTSGLDR---ESYPTYTLVVQAADL-QGEGL-----STTAKAVITVKD 112

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 8e-04
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 268 NDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEKLSSSATLIVQV 327
           ND+ P F ++ +   + E    G+ +  +     D D+           +S    L  + 
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60

Query: 328 TDVNDNVPSFELNAYTGNVLETAQAGTSITTITALDSDG 366
               +          +G   E+    T    + A D  G
Sbjct: 61  MFTVNRDTGVISVLTSGLDRESYP--TYTLVVQAADLQG 97

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 331 NDNVPSFELNAYTGNVLETAQAGTSITTITALDSDGGDYGTGGI 374
           NDN P F    + G+V E A  GTS+  ++A D+D         
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAA 44

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 19/119 (15%)

Query: 157 PPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIY---------YDLLTNPDEFF 207
            P F    F G + E    G+ V+ V A D D                       P+ F 
Sbjct: 5   RPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFT 64

Query: 208 LIDSNTGELKTAKPLDREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
           +             LDRE         +LTV+A ++ +G  L     +   +  + I D
Sbjct: 65  INRETGVISLIGTGLDRE----KFPEYTLTVQATDL-EGAGL-----SVEGKAIIQITD 113

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 331 NDNVPSFELNAYTGNVLETAQAGTSITTITA 361
           NDN P F  + + G+V E  Q GT +  ++A
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQPGTQVMAVSA 32

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 268 NDSPPVFNRKEYVVHIPEDIPDGSLL 293
           ND+ P F +  +   + E +  G+ +
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQPGTQV 27

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 16/104 (15%)

Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYY-----DLLTNPDEFFLIDSNTGELKTAKPL 222
            + E++  G     +        +  S+ Y          P   F+I+  +G+L   KPL
Sbjct: 10  NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68

Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
           DRE+         L   A ++ +G  +          + + ++D
Sbjct: 69  DREL----IARFHLRAHAVDI-NGNQV-----ENPIDIVINVID 102

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 15  VNSPLVVEENTPPGTI--VSTLEGVDPEGSKVKYGIYGTD-------RFSLDRDSGELRV 65
           V  P+ V EN        +  ++      +KV Y I G          F ++ ++G + V
Sbjct: 3   VIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLV 62

Query: 66  AQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTD 103
            +PLDRE       +     E   P    ++  I   D
Sbjct: 63  TRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 16/104 (15%)

Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
           ++ E+   G    R+     +  +   +YY +        P   F I+  TG +   +PL
Sbjct: 8   KVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66

Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
           DRE          L+  A    +G P+         ++T+ ++D
Sbjct: 67  DRE----EYDKYVLSSHAVSE-NGSPV-----EEPMEITINVID 100

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 16/104 (15%)

Query: 168 EIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLL-----TNPDEFFLIDSNTGELKTAKPL 222
              E+   G     +     +  +   ++Y +      T P   F+I+  TG LK  +PL
Sbjct: 11  SCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPL 69

Query: 223 DREILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD 266
           DRE         +L   A    +G  +         ++ +T+ D
Sbjct: 70  DRE----RIATYTLFSHAVSS-NGNAV-----EDPMEILITVTD 103

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 15  VNSPLVVEENTPPGTIVSTLEGVDP---EGSKVKYGIYGTD-------RFSLDRDSGELR 64
           V  P+   EN   G     L  +     +  KV Y I G          F ++R++G L+
Sbjct: 6   VIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLK 64

Query: 65  VAQPLDREYNSTNTSTIVLTLEGVDPEGSKVKYGIYGTD 103
           V +PLDRE  +T T          +     ++  I  TD
Sbjct: 65  VTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 8/105 (7%), Positives = 19/105 (18%), Gaps = 36/105 (34%)

Query: 268 NDSPPVFNRKEYVVHIPEDIPDGSLLPDLDMIVTDSDLVIAEETHTAEK----------- 316
           ND+ PV + + + +      P    + D D+        ++    +              
Sbjct: 1   NDNGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 60

Query: 317 -------------------------LSSSATLIVQVTDVNDNVPS 336
                                          +   V         
Sbjct: 61  MLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIK 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	388
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.84
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.8
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.8
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.78
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.77
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.76
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.75
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.75
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.73
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.72
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.7
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.61
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.58
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.46
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.46
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.43
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.42
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.33
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.33
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.31

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.84  E-value=1.5e-21  Score=149.72  Aligned_cols=107  Identities=21%  Similarity=0.351  Sum_probs=97.7

Q ss_pred             CCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcccEE
Q psy4200         155 NTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTNGVI  234 (388)
Q Consensus       155 d~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~  234 (388)
                      ||+|.|.+..|...|+|+.++|+.|+++.|+|+|.+.++.++|+|.+++.++|.|++.+|.|++.++||||.....+..|
T Consensus         1 Dn~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~~~~F~id~~tG~i~~~~~lD~E~~~~~~~~y   80 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTY   80 (107)
T ss_dssp             CCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCC
T ss_pred             CcCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecCCCcccceeccccceEEEccccChhhccccCCeE
Confidence            68999999999999999999999999999999999999999999988778899999999999999999999765446789


Q ss_pred             EEEEEEEEccCCCCcCCCCceEEEEEEEEEccc
Q psy4200         235 SLTVRAREMVDGKPLQEDQATAFAQVTVTILDV  267 (388)
Q Consensus       235 ~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dv  267 (388)
                      .|.|.|+|  +|.|    .+++++++.|+|.||
T Consensus        81 ~l~v~a~D--~g~p----~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          81 TVIMLVTD--DGVS----VGTGTGTLILHVLDV  107 (107)
T ss_dssp             EEEEEEEE--CSSS----CCCCCEEEECCBCCC
T ss_pred             EEEEEEEE--CCcC----CcEEEEEEEEEEEeC
Confidence            99999998  6665    678889999999986

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.80  E-value=6e-20  Score=142.15  Aligned_cols=104  Identities=26%  Similarity=0.360  Sum_probs=90.9

Q ss_pred             cCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCC---CCceEEEEEec-C----CCCceEEeCCeeEEEec-ccCC
Q psy4200         153 VQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLA---QPRSIYYDLLT-N----PDEFFLIDSNTGELKTA-KPLD  223 (388)
Q Consensus       153 vNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~---~~~~v~y~l~~-~----~~~~F~id~~tG~i~~~-~~LD  223 (388)
                      .|||+|+|.+..|.+.|+|+.++|+.|+++.|+|+|.+   .|+.+.|+|.. .    ...+|.|++.+|.|++. ++||
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~LD   80 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLD   80 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCC
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEeccccC
Confidence            49999999999999999999999999999999999987   46789999975 2    23689999999999985 6799


Q ss_pred             ccccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         224 REILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       224 ~E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      ||.    ...|.|.|+|+|  .|.+    .++++++|.|+|.|
T Consensus        81 ~E~----~~~y~l~V~a~D--~~~~----~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          81 REK----FPEYTLTVQATD--LEGA----GLSVEGKAIIQITD  113 (113)
T ss_dssp             TTT----CCEEEEEEEEEH--HHHT----SCEEECCEEEEEEC
T ss_pred             ccc----CCEEEEEEEEEE--CCCC----CcEEEEEEEEEEEC
Confidence            999    568999999997  3433    57899999999986

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.7e-19  Score=139.44  Aligned_cols=103  Identities=26%  Similarity=0.426  Sum_probs=90.1

Q ss_pred             CCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCC---CceEEEEEecC-----CCCceEEeCCeeEEEe-cccCCc
Q psy4200         154 QNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQ---PRSIYYDLLTN-----PDEFFLIDSNTGELKT-AKPLDR  224 (388)
Q Consensus       154 Nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~---~~~v~y~l~~~-----~~~~F~id~~tG~i~~-~~~LD~  224 (388)
                      |||+|+|.+..|.+.|+|+.++|+.|+++.|+|+|.+.   |+.++|+|...     ...+|.|++.+|.|++ .+.|||
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~   80 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR   80 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCT
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEeccccc
Confidence            89999999999999999999999999999999999864   67899999752     2468999999999987 567999


Q ss_pred             cccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         225 EILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       225 E~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      |.    ...|.|.|+|+|  .|.+    .++++++|.|+|.|
T Consensus        81 E~----~~~y~l~V~a~D--~g~~----~~~~~~~v~I~V~D  112 (112)
T d1edha2          81 ES----YPTYTLVVQAAD--LQGE----GLSTTAKAVITVKD  112 (112)
T ss_dssp             TT----CCEEEEEEEEET--GGGT----SCEEEEEEEEEEEC
T ss_pred             cc----CcEEEEEEEEEE--CCCC----ccEEEEEEEEEEEC
Confidence            99    568999999997  3443    67899999999986

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=4.9e-20  Score=147.07  Aligned_cols=124  Identities=12%  Similarity=0.128  Sum_probs=104.9

Q ss_pred             ccCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC-CCeEEEEEecCCcEEEeCCeeEEEEcccCCCcccceeeEEE
Q psy4200           3 AYGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE-GSKVKYGIYGTDRFSLDRDSGELRVAQPLDREYNSTNTSTI   81 (388)
Q Consensus         3 d~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D-~~~i~y~i~~~~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l   81 (388)
                      |+|++.|.|.+..|. +.|+|++++|+.|++|.|+|.| ++.++|++.+...|.|++ +|.|++.++||||.. .|.  |
T Consensus         5 ~~~~c~P~F~~~~Y~-~~V~E~~~~Gt~v~~V~a~D~d~~~~~~y~~~~~~~F~i~~-~G~I~~~~~ld~e~~-~y~--l   79 (136)
T d1op4a_           5 EIALCKTGFPEDVYS-AVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDE-DGTVYAVRSFPLTAE-QAK--F   79 (136)
T ss_dssp             CCCCCCCBCCSCEEE-ECCCCSSCSSCCEEECCCBCCSSCCCEEEECCCSSEEEEET-TTEEEEESCCSCSSS-CEE--E
T ss_pred             CCCCccceecCCeEE-EEEECCCCCCCEEEEeEeecCCccccceeccccceeeeccc-cEEEEEecccCcccc-eEE--E
Confidence            789999999999999 9999999999999999999998 688999998878899998 699999999999964 688  8


Q ss_pred             EEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCCCeee
Q psy4200          82 VLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTPPIFI  161 (388)
Q Consensus        82 ~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~P~f~  161 (388)
                      +|.|.|..                                                +...+.+.|+|.+.|.||+.|.|.
T Consensus        80 ~V~A~D~g------------------------------------------------~~~~~~t~V~i~v~d~nd~~p~~~  111 (136)
T d1op4a_          80 LIYAQDKE------------------------------------------------TQEKWQVAVNLSREPTLTEEPMKE  111 (136)
T ss_dssp             EEEEEETT------------------------------------------------TTEEEEEEEEECCCCCCCCCCSSC
T ss_pred             EEEEEecC------------------------------------------------CcceeeeEEEEEEcccCCCCCccc
Confidence            88888821                                                122355688999999999999997


Q ss_pred             CCcc-eEEEecCCCCCcEE
Q psy4200         162 NSSF-SGEIMESAPIGSVV  179 (388)
Q Consensus       162 ~~~~-~~~v~E~~~~g~~v  179 (388)
                      ...+ ...++|+.+.|..+
T Consensus       112 ~~~~~~i~~P~~~~~~~~~  130 (136)
T d1op4a_         112 PHEIEEIVFPRQLAKHSGA  130 (136)
T ss_dssp             CCCSCCCSSCCCCCCCCSC
T ss_pred             CCCCceEEccCcCCCCCCc
Confidence            5544 56678887766543

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1e-18  Score=135.38  Aligned_cols=106  Identities=27%  Similarity=0.475  Sum_probs=87.3

Q ss_pred             CCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCC--CCCceEEEEEec-----CCCCceEEeCCeeEE-EecccCCcc
Q psy4200         154 QNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDL--AQPRSIYYDLLT-----NPDEFFLIDSNTGEL-KTAKPLDRE  225 (388)
Q Consensus       154 Nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~--~~~~~v~y~l~~-----~~~~~F~id~~tG~i-~~~~~LD~E  225 (388)
                      |||+|+|.+..|.+.|+|+.++|+.|+++.|+|+|.  +.|+.++|+|.+     ....+|.|++.+|.+ .++++||||
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E   80 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDRE   80 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCTT
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEeccccccc
Confidence            899999999999999999999999999999999996  457899999975     234689999999975 568899999


Q ss_pred             ccCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         226 ILGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       226 ~~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      .    ...|.|.|+|+|. .|.+  ...+++.++|.|.|.|
T Consensus        81 ~----~~~y~l~V~A~D~-~~~~--~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          81 K----VQQYTLIIQATDM-EGNP--TYGLSNTATAVITVTD  114 (114)
T ss_dssp             T----CSEEEEEEEEESG-GGCB--TTBCEEEEEEEEEEC-
T ss_pred             c----CCEEEEEEEEEEC-CCCC--CCCceEEEEEEEEEEC
Confidence            9    5689999999973 1222  1346788899998876

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.76  E-value=6.2e-19  Score=136.32  Aligned_cols=81  Identities=27%  Similarity=0.453  Sum_probs=73.9

Q ss_pred             cCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC------CCeEEEEEecC-------CcEEEeCCeeEEEEc-ccC
Q psy4200           4 YGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE------GSKVKYGIYGT-------DRFSLDRDSGELRVA-QPL   69 (388)
Q Consensus         4 ~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D------~~~i~y~i~~~-------~~F~Id~~tG~i~~~-~~l   69 (388)
                      .|||+|+|.+..|. +.|+|++++|+.|+++.|.|+|      |+.+.|+|.+.       .+|.|++.||.|++. +.|
T Consensus         1 eNDn~P~F~~~~y~-~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~L   79 (113)
T d1l3wa2           1 QNDNRPKFTQDVFR-GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGL   79 (113)
T ss_dssp             CSCCCCEESSSCEE-EEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCC
T ss_pred             CCCCCCccCCCeEE-EEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEecccc
Confidence            59999999999999 9999999999999999999998      36799999742       479999999999985 679


Q ss_pred             CCcccceeeEEEEEEEEe
Q psy4200          70 DREYNSTNTSTIVLTLEG   87 (388)
Q Consensus        70 D~e~~~~~~~~l~v~a~D   87 (388)
                      |||....|.  |.|.|+|
T Consensus        80 D~E~~~~y~--l~V~a~D   95 (113)
T d1l3wa2          80 DREKFPEYT--LTVQATD   95 (113)
T ss_dssp             CTTTCCEEE--EEEEEEH
T ss_pred             CcccCCEEE--EEEEEEE
Confidence            999999999  9999988

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.7e-18  Score=132.49  Aligned_cols=80  Identities=31%  Similarity=0.515  Sum_probs=72.5

Q ss_pred             CCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC------CCeEEEEEec-------CCcEEEeCCeeEEEE-cccCC
Q psy4200           5 GNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE------GSKVKYGIYG-------TDRFSLDRDSGELRV-AQPLD   70 (388)
Q Consensus         5 nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D------~~~i~y~i~~-------~~~F~Id~~tG~i~~-~~~lD   70 (388)
                      |||+|+|.+..|. +.|+|++++|+.|+++.|+|+|      ++.++|+|.+       ..+|.|++.+|.|++ .+.||
T Consensus         1 NDn~P~F~~~~y~-~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD   79 (112)
T d1edha2           1 NDNRPEFTQEVFE-GSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD   79 (112)
T ss_dssp             SCCCCEESCSEEE-EEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCC
T ss_pred             CCCCCccCCCEEE-EEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEecccc
Confidence            8999999999999 9999999999999999999998      3579999974       147999999999987 46799


Q ss_pred             CcccceeeEEEEEEEEe
Q psy4200          71 REYNSTNTSTIVLTLEG   87 (388)
Q Consensus        71 ~e~~~~~~~~l~v~a~D   87 (388)
                      ||....|.  |+|.|+|
T Consensus        80 ~E~~~~y~--l~V~a~D   94 (112)
T d1edha2          80 RESYPTYT--LVVQAAD   94 (112)
T ss_dssp             TTTCCEEE--EEEEEET
T ss_pred             cccCcEEE--EEEEEEE
Confidence            99999999  8888888

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2e-18  Score=137.63  Aligned_cols=125  Identities=12%  Similarity=0.150  Sum_probs=106.8

Q ss_pred             ecCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecCCCCceEEeCCeeEEEecccCCccccCCcc
Q psy4200         152 DVQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTNPDEFFLIDSNTGELKTAKPLDREILGGTN  231 (388)
Q Consensus       152 dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~~~~~F~id~~tG~i~~~~~LD~E~~~~~~  231 (388)
                      |+|++.|.|.+..|.+.|+|+.++|+.|++|.|+|.|.+  +.+.|++..  ...|.|++ +|.|.+.++||||.    .
T Consensus         5 ~~~~c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d~~--~~~~y~~~~--~~~F~i~~-~G~I~~~~~ld~e~----~   75 (136)
T d1op4a_           5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRK--RKVQYESSE--PADFKVDE-DGTVYAVRSFPLTA----E   75 (136)
T ss_dssp             CCCCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSSC--CCEEEECCC--SSEEEEET-TTEEEEESCCSCSS----S
T ss_pred             CCCCccceecCCeEEEEEECCCCCCCEEEEeEeecCCcc--ccceecccc--ceeeeccc-cEEEEEecccCccc----c
Confidence            789999999999999999999999999999999999964  578999853  46799997 59999999999996    2


Q ss_pred             cEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCccCCC-cEEEEEeCCCCCCCee
Q psy4200         232 GVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVFNRK-EYVVHIPEDIPDGSLL  293 (388)
Q Consensus       232 ~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f~~~-~~~~~v~E~~~~g~~v  293 (388)
                       .|.|.|+|+|  .|.+     ..+.+.|.|.+.|.||+.|.|... .+.+.++|+...|..+
T Consensus        76 -~y~l~V~A~D--~g~~-----~~~~t~V~i~v~d~nd~~p~~~~~~~~~i~~P~~~~~~~~~  130 (136)
T d1op4a_          76 -QAKFLIYAQD--KETQ-----EKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGA  130 (136)
T ss_dssp             -CEEEEEEEEE--TTTT-----EEEEEEEEECCCCCCCCCCSSCCCCSCCCSSCCCCCCCCSC
T ss_pred             -eEEEEEEEEe--cCCc-----ceeeeEEEEEEcccCCCCCcccCCCCceEEccCcCCCCCCc
Confidence             4999999998  5543     456788999999999999999654 4567888988877654

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=6.2e-18  Score=130.85  Aligned_cols=80  Identities=28%  Similarity=0.515  Sum_probs=71.6

Q ss_pred             CCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC-----CCeEEEEEec-------CCcEEEeCCeeEE-EEcccCCC
Q psy4200           5 GNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE-----GSKVKYGIYG-------TDRFSLDRDSGEL-RVAQPLDR   71 (388)
Q Consensus         5 nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D-----~~~i~y~i~~-------~~~F~Id~~tG~i-~~~~~lD~   71 (388)
                      |||+|+|.+..|. +.|+|++++|+.|+++.|.|+|     ++.++|+|.+       ...|.|++.+|.| +++++|||
T Consensus         1 NDn~P~F~~~~y~-~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~   79 (114)
T d1ncja2           1 NDNRPEFLHQVWN-GSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDR   79 (114)
T ss_dssp             CCSCCCCSCSEEE-EEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCT
T ss_pred             CCCCCCcCCCeEE-EEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEecccccc
Confidence            8999999999999 9999999999999999999998     3789999974       1479999999975 57789999


Q ss_pred             cccceeeEEEEEEEEe
Q psy4200          72 EYNSTNTSTIVLTLEG   87 (388)
Q Consensus        72 e~~~~~~~~l~v~a~D   87 (388)
                      |....|.  |.|.|+|
T Consensus        80 E~~~~y~--l~V~A~D   93 (114)
T d1ncja2          80 EKVQQYT--LIIQATD   93 (114)
T ss_dssp             TTCSEEE--EEEEEES
T ss_pred             ccCCEEE--EEEEEEE
Confidence            9999999  9999998

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.72  E-value=5.7e-18  Score=129.40  Aligned_cols=79  Identities=27%  Similarity=0.415  Sum_probs=71.9

Q ss_pred             CCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC---CCeEEEEEec--CCcEEEeCCeeEEEEcccCCCccc----ce
Q psy4200           6 NSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYG--TDRFSLDRDSGELRVAQPLDREYN----ST   76 (388)
Q Consensus         6 d~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~--~~~F~Id~~tG~i~~~~~lD~e~~----~~   76 (388)
                      ||+|.|.+..|. +.|+|+.++|+.|+++.|.|+|   ++.++|+|.+  .++|.|++.+|.|++++.||||..    ..
T Consensus         1 Dn~P~F~~~~~~-~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~~~~F~id~~tG~i~~~~~lD~E~~~~~~~~   79 (107)
T d1l3wa4           1 NEAPFFVPAVSR-VDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNT   79 (107)
T ss_dssp             CCCCEESSCEEC-CCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSC
T ss_pred             CcCCCcCCCeEE-EEEECCCCCCCEEEEeEEecCCcCcCCceeEEecCCCcccceeccccceEEEccccChhhccccCCe
Confidence            799999999999 9999999999999999999998   4789999986  468999999999999999999953    56


Q ss_pred             eeEEEEEEEEe
Q psy4200          77 NTSTIVLTLEG   87 (388)
Q Consensus        77 ~~~~l~v~a~D   87 (388)
                      |.  |.|.|.|
T Consensus        80 y~--l~v~a~D   88 (107)
T d1l3wa4          80 YT--VIMLVTD   88 (107)
T ss_dssp             CE--EEEEEEE
T ss_pred             EE--EEEEEEE
Confidence            88  8888888

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.70  E-value=1.9e-17  Score=127.78  Aligned_cols=107  Identities=32%  Similarity=0.405  Sum_probs=88.3

Q ss_pred             cCCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCc--eEEEEEecCCCCceEEe----CCeeEEEecccCCccc
Q psy4200         153 VQNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPR--SIYYDLLTNPDEFFLID----SNTGELKTAKPLDREI  226 (388)
Q Consensus       153 vNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~--~v~y~l~~~~~~~F~id----~~tG~i~~~~~LD~E~  226 (388)
                      .|||+|+|.+..|.++|+|+ ++|+.|+++.|+|+|.+.+.  .+.|.+.+.....|.|.    ..+|.|++.++||||.
T Consensus         1 aNDn~P~F~~~~y~~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~g~i~~~~~lD~E~   79 (113)
T d1l3wa3           1 ANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFEL   79 (113)
T ss_dssp             CCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSS
T ss_pred             CCCCCCEeCCCeEEEEEECC-CCCCEEEEEEEEccccCCcceeEEEEeeccccccceEEEeecCCCceEEEeeeeccccc
Confidence            49999999999999999999 57999999999999987533  45566656667889984    4679999999999999


Q ss_pred             cCCcccEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEccc
Q psy4200         227 LGGTNGVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDV  267 (388)
Q Consensus       227 ~~~~~~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dv  267 (388)
                          ...|.|.|+|+|...   ...+.++++++|.|+|.||
T Consensus        80 ----~~~y~l~V~a~D~~~---~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          80 ----RKQYVLQITVENAEP---FSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             ----CCCEEEEECCEESSC---CSSCCCCCCEEEEEEEECC
T ss_pred             ----CCEEEEEEEEEECCC---CCCCceEeEEEEEEEEEeC
Confidence                568999999998421   1224678999999999986

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.61  E-value=1.1e-15  Score=117.68  Aligned_cols=80  Identities=25%  Similarity=0.301  Sum_probs=67.9

Q ss_pred             cCCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCCC-----CeEEEEEec--CCcEEEe----CCeeEEEEcccCCCc
Q psy4200           4 YGNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPEG-----SKVKYGIYG--TDRFSLD----RDSGELRVAQPLDRE   72 (388)
Q Consensus         4 ~nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D~-----~~i~y~i~~--~~~F~Id----~~tG~i~~~~~lD~e   72 (388)
                      +|||+|+|.+..|. ++|+|+ ++|+.|+++.|.|+|.     ..+.|.+.+  .+.|.|.    ..+|.|++.++||||
T Consensus         1 aNDn~P~F~~~~y~-~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~g~i~~~~~lD~E   78 (113)
T d1l3wa3           1 ANDNAPIFDPKTYT-ALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFE   78 (113)
T ss_dssp             CCCCCCCBSCSEEE-EEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCS
T ss_pred             CCCCCCEeCCCeEE-EEEECC-CCCCEEEEEEEEccccCCcceeEEEEeeccccccceEEEeecCCCceEEEeeeecccc
Confidence            59999999999999 999999 5799999999999872     334454444  3578885    468999999999999


Q ss_pred             ccceeeEEEEEEEEe
Q psy4200          73 YNSTNTSTIVLTLEG   87 (388)
Q Consensus        73 ~~~~~~~~l~v~a~D   87 (388)
                      ....|.  |+|.|+|
T Consensus        79 ~~~~y~--l~V~a~D   91 (113)
T d1l3wa3          79 LRKQYV--LQITVEN   91 (113)
T ss_dssp             SCCCEE--EEECCEE
T ss_pred             cCCEEE--EEEEEEE
Confidence            999999  9999998

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.58  E-value=3.1e-16  Score=119.64  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=82.7

Q ss_pred             CCCCCeeeCCcceEEEecCCCCCcEEEEEEEeeCCCCCCc-eEEEEEecCCCCceEE-eCCeeEEEecccCCccccCCcc
Q psy4200         154 QNTPPIFINSSFSGEIMESAPIGSVVLRVEAKDGDLAQPR-SIYYDLLTNPDEFFLI-DSNTGELKTAKPLDREILGGTN  231 (388)
Q Consensus       154 Nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~-~v~y~l~~~~~~~F~i-d~~tG~i~~~~~LD~E~~~~~~  231 (388)
                      |||+|.|.+  +..+|.|+.+.+.   .|.|+|+|.+.|+ .++|+|.++....|.+ ....|.+...++||+|.    .
T Consensus         1 NDNaP~f~~--~~~~v~e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ld~e~----~   71 (107)
T d1l3wa5           1 NDNGPVPSP--RVFTMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLK----K   71 (107)
T ss_dssp             CCSCCCBSC--CCEEECSSSCCCE---EEEBCCSSCTTTTCCCCCBCCSCSSSSCBCCBCTTSSEEEEBCSSCCC----S
T ss_pred             CCCCCccCC--CEEEEEecCCCce---eEEEEcCccCccceeEeeeeecccccccccccccceeeeeeecccccc----c
Confidence            899999985  4557999988764   4789999999877 5889998765556665 34456666678999998    5


Q ss_pred             cEEEEEEEEEEccCCCCcCCCCceEEEEEEEEEcccCCCCCcc
Q psy4200         232 GVISLTVRAREMVDGKPLQEDQATAFAQVTVTILDVNDSPPVF  274 (388)
Q Consensus       232 ~~~~l~v~a~D~~~g~~~~~~~~~~~~~v~I~V~dvNd~~P~f  274 (388)
                      ..|.|.|+|+|  .|.|      ..++++.|+|.|+|||+|.+
T Consensus        72 ~~y~l~V~a~D--~G~p------~~~~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          72 GDYSIYVLLSD--AQNN------PQLTVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             SCBCCEEECCS--SSCC------CEEEECCEEECSCSSSCCCC
T ss_pred             eeEEEEEEEEe--CCCC------ceEEEEEEEEEEeeCCcCcc
Confidence            57999999997  5654      34567999999999999875

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.46  E-value=1.6e-13  Score=102.60  Aligned_cols=90  Identities=21%  Similarity=0.353  Sum_probs=76.5

Q ss_pred             eEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEecC-----CCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEE
Q psy4200         166 SGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLTN-----PDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA  240 (388)
Q Consensus       166 ~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~~-----~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a  240 (388)
                      ...|.||.+ |.....+.+.|.|.+.|+.++|+|.+.     +.++|.|++.+|.|++.++||||.    ...|.|.|.|
T Consensus         6 ~i~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~----~~~y~l~V~a   80 (100)
T d1l3wa1           6 PIKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREE----YDKYVLSSHA   80 (100)
T ss_dssp             CEEEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CCEEEEEEEE
T ss_pred             CEEEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeeccccc----CCEEEEEEEE
Confidence            457999975 656778899999999999999999852     236799999999999999999999    5689999999


Q ss_pred             EEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         241 REMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       241 ~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      +|  .|.+    .+++++.+.|+|.|
T Consensus        81 ~D--~g~~----~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          81 VS--ENGS----PVEEPMEITINVID  100 (100)
T ss_dssp             EE--SSSC----BCSCCEEEEEEEEC
T ss_pred             EE--CCCC----cEEeEEEEEEEEeC
Confidence            98  5554    67889999999986

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=9.3e-14  Score=104.31  Aligned_cols=90  Identities=21%  Similarity=0.337  Sum_probs=75.8

Q ss_pred             eEEEecCCCCCcEEEEEEEeeCCCCCCceEEEEEec-----CCCCceEEeCCeeEEEecccCCccccCCcccEEEEEEEE
Q psy4200         166 SGEIMESAPIGSVVLRVEAKDGDLAQPRSIYYDLLT-----NPDEFFLIDSNTGELKTAKPLDREILGGTNGVISLTVRA  240 (388)
Q Consensus       166 ~~~v~E~~~~g~~v~~v~A~D~D~~~~~~v~y~l~~-----~~~~~F~id~~tG~i~~~~~LD~E~~~~~~~~~~l~v~a  240 (388)
                      .++|.||.+ |..+..+.+.|.|.+.|+.++|+|.+     ++.++|.||+.+|.|+++++||||.    ...|.|.|.|
T Consensus         8 ~v~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~----~~~y~l~V~A   82 (102)
T d1ncia_           8 PINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDREL----IARFHLRAHA   82 (102)
T ss_dssp             CEEEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CSEEEEEEEE
T ss_pred             CEEEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhc----CcceEEEEEE
Confidence            457999987 55667788889999889999999974     2346899999999999999999999    5689999999


Q ss_pred             EEccCCCCcCCCCceEEEEEEEEEcc
Q psy4200         241 REMVDGKPLQEDQATAFAQVTVTILD  266 (388)
Q Consensus       241 ~D~~~g~~~~~~~~~~~~~v~I~V~d  266 (388)
                      +|  .|.+    .+++++++.|+|+|
T Consensus        83 ~D--~g~~----~~~~~~~v~I~V~D  102 (102)
T d1ncia_          83 VD--INGN----QVENPIDIVINVID  102 (102)
T ss_dssp             EC--TTSC----BSSCCEEEEEEEEC
T ss_pred             EE--CCCC----ceeeeEEEEEEEeC
Confidence            97  4543    56788999999986

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.42  E-value=3.6e-14  Score=107.87  Aligned_cols=99  Identities=12%  Similarity=0.137  Sum_probs=75.8

Q ss_pred             CCCCCeeccCCCcceEEecCCCCCcEEEEEEEECCC---C-CeEEEEEecC--CcEEEe-CCeeEEEEcccCCCccccee
Q psy4200           5 GNSPPSFTTDVNSPLVVEENTPPGTIVSTLEGVDPE---G-SKVKYGIYGT--DRFSLD-RDSGELRVAQPLDREYNSTN   77 (388)
Q Consensus         5 nd~~P~F~~~~~~~~~v~E~~~~gt~v~~v~a~D~D---~-~~i~y~i~~~--~~F~Id-~~tG~i~~~~~lD~e~~~~~   77 (388)
                      |||+|.|.+  +. ++|.|+.+.|.   .|+|+|+|   + ..++|+|.++  ..|.+. ...|.+...++||+|....|
T Consensus         1 NDNaP~f~~--~~-~~v~e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ld~e~~~~y   74 (107)
T d1l3wa5           1 NDNGPVPSP--RV-FTMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDY   74 (107)
T ss_dssp             CCSCCCBSC--CC-EEECSSSCCCE---EEEBCCSSCTTTTCCCCCBCCSCSSSSCBCCBCTTSSEEEEBCSSCCCSSCB
T ss_pred             CCCCCccCC--CE-EEEEecCCCce---eEEEEcCccCccceeEeeeeecccccccccccccceeeeeeeccccccceeE
Confidence            899999986  45 77999998775   47899998   2 4689999864  345553 34555666688999999999


Q ss_pred             eEEEEEEEEecCCCCccceeeeecceeEEecCCccEEEEcCCCCccccceEEEEEEEeeCCCceeEEEEEEEEeecCCCC
Q psy4200          78 TSTIVLTLEGVDPEGSKVKYGIYGTDWFSLDRDSGELRVAQPLYREDGHHTSKTNVDIRDGHHTSKTNVDIRVGDVQNTP  157 (388)
Q Consensus        78 ~~~l~v~a~D~~P~f~~~~~~~~g~~v~~~D~d~g~~~~~~~~~~~~~~~~~~~~v~a~d~~~~~~~~v~V~V~dvNd~~  157 (388)
                      .  |.|.|+|                                                 .|+.+...+++|+|.|.|||+
T Consensus        75 ~--l~V~a~D-------------------------------------------------~G~p~~~~tv~V~V~Dc~dn~  103 (107)
T d1l3wa5          75 S--IYVLLSD-------------------------------------------------AQNNPQLTVVNATVCSCEGKA  103 (107)
T ss_dssp             C--CEEECCS-------------------------------------------------SSCCCEEEECCEEECSCSSSC
T ss_pred             E--EEEEEEe-------------------------------------------------CCCCceEEEEEEEEEEeeCCc
Confidence            9  7777766                                                 134455678999999999999


Q ss_pred             Cee
Q psy4200         158 PIF  160 (388)
Q Consensus       158 P~f  160 (388)
                      |.+
T Consensus       104 ~~c  106 (107)
T d1l3wa5         104 IKC  106 (107)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            976

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=2.2e-12  Score=96.58  Aligned_cols=66  Identities=24%  Similarity=0.390  Sum_probs=56.1

Q ss_pred             eEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200          19 LVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG   87 (388)
Q Consensus        19 ~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D   87 (388)
                      ++|+||.+ |..+..+.+.|.|   |+.++|+|.+.       ++|.||+.||.|+++++||||+...|.  |.|.|.|
T Consensus         9 v~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~--l~V~A~D   84 (102)
T d1ncia_           9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFH--LRAHAVD   84 (102)
T ss_dssp             EEEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEE--EEEEEEC
T ss_pred             EEEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceE--EEEEEEE
Confidence            89999998 4445566666665   68999999852       379999999999999999999999999  9999888

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.33  E-value=3.7e-12  Score=95.03  Aligned_cols=66  Identities=27%  Similarity=0.394  Sum_probs=56.1

Q ss_pred             eEEecCCCCCcEEEEEEEECCC---CCeEEEEEecC-------CcEEEeCCeeEEEEcccCCCcccceeeEEEEEEEEe
Q psy4200          19 LVVEENTPPGTIVSTLEGVDPE---GSKVKYGIYGT-------DRFSLDRDSGELRVAQPLDREYNSTNTSTIVLTLEG   87 (388)
Q Consensus        19 ~~v~E~~~~gt~v~~v~a~D~D---~~~i~y~i~~~-------~~F~Id~~tG~i~~~~~lD~e~~~~~~~~l~v~a~D   87 (388)
                      +.|+||.+ |..+..+.+.|.|   |+.++|+|.+.       +.|.||+.||.|+++++||||+...|.  |+|.|.|
T Consensus         7 i~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~--l~V~a~D   82 (100)
T d1l3wa1           7 IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYV--LSSHAVS   82 (100)
T ss_dssp             EEEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEE--EEEEEEE
T ss_pred             EEEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEE--EEEEEEE
Confidence            89999985 4445566666665   78999999852       369999999999999999999999999  9999998