Psyllid ID: psy4210

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHSQEKV
Secondary Structure (PSIPRED)
cEEEEEccccccHHHccEEHHHHHHHHHHcccccccEEEEEEEEcHHHcccccHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEEcccccccccEEEEEccccccccEEcccccccHHHHHHcccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mtltlssnpshlelvypvnlgktkafqfltndnagdriahpklsnsslMITLGIGLPMFLYTEILHSQEKV
Flexible Loop (DISEMBL)
mtltlssnpshleLVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHSQEKV
Low Complexity Region (SEG)
MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHSQEKV
Disordered region (IsUnstruct)
***********LELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL******
Disordered Region (DISOPRED)
MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL******
Disordered Region (DISEMBL)
********PSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHSQEKV
Disordered Region (DISPRO)
*TLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHSQEKV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q68EW0	1018	2-oxoglutarate dehydrogen	N/A	N/A	0.535	0.037	0.552	0.0001
Q5RCB8	1023	2-oxoglutarate dehydrogen	yes	N/A	0.901	0.062	0.375	0.0002
Q02218	1023	2-oxoglutarate dehydrogen	no	N/A	0.901	0.062	0.375	0.0002
Q5XI78	1023	2-oxoglutarate dehydrogen	yes	N/A	0.901	0.062	0.375	0.0002
Q60597	1023	2-oxoglutarate dehydrogen	yes	N/A	0.901	0.062	0.375	0.0002
Q60HE2	1023	2-oxoglutarate dehydrogen	N/A	N/A	0.901	0.062	0.375	0.0002
Q148N0	1023	2-oxoglutarate dehydrogen	yes	N/A	0.901	0.062	0.375	0.0002
Q5R9L8	1010	2-oxoglutarate dehydrogen	no	N/A	0.535	0.037	0.552	0.0003
Q9ULD0	1010	2-oxoglutarate dehydrogen	no	N/A	0.535	0.037	0.552	0.0003
Q6P6Z8	1021	2-oxoglutarate dehydrogen	N/A	N/A	0.535	0.037	0.526	0.0006

>sp|Q68EW0|OGDHL_XENLA 2-oxoglutarate dehydrogenase-like, mitochondrial OS=Xenopus laevis GN=ogdhl PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 27/38 (71%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRI 38
           +TL+L +NPSHLE V PV  GKTKA QF   D  G+++
Sbjct: 361 ITLSLVANPSHLEAVDPVVQGKTKAEQFYRGDTEGNKV 398

Xenopus laevis (taxid: 8355)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: -

>sp|Q5RCB8|ODO1_PONAB 2-oxoglutarate dehydrogenase, mitochondrial OS=Pongo abelii GN=OGDH PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
           +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct: 366 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 425

Query: 61  YTEI 64
            +++
Sbjct: 426 LSDL 429

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

>sp|Q02218|ODO1_HUMAN 2-oxoglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=OGDH PE=1 SV=3

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
           +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct: 366 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 425

Query: 61  YTEI 64
            +++
Sbjct: 426 LSDL 429

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

>sp|Q5XI78|ODO1_RAT 2-oxoglutarate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ogdh PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
           +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct: 366 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 425

Query: 61  YTEI 64
            +++
Sbjct: 426 LSDL 429

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

>sp|Q60597|ODO1_MOUSE 2-oxoglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=Ogdh PE=1 SV=3

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
           +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct: 366 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 425

Query: 61  YTEI 64
            +++
Sbjct: 426 LSDL 429

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

>sp|Q60HE2|ODO1_MACFA 2-oxoglutarate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=OGDH PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
           +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct: 366 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 425

Query: 61  YTEI 64
            +++
Sbjct: 426 LSDL 429

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

>sp|Q148N0|ODO1_BOVIN 2-oxoglutarate dehydrogenase, mitochondrial OS=Bos taurus GN=OGDH PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
           +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct: 366 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 425

Query: 61  YTEI 64
            +++
Sbjct: 426 LSDL 429

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

>sp|Q5R9L8|OGDHL_PONAB 2-oxoglutarate dehydrogenase-like, mitochondrial OS=Pongo abelii GN=OGDHL PE=2 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRI 38
           +TL+L +NPSHLE V PV  GKTKA QF   D  G ++
Sbjct: 353 ITLSLVANPSHLEAVDPVVQGKTKAEQFYRGDAQGKKV 390

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: -

>sp|Q9ULD0|OGDHL_HUMAN 2-oxoglutarate dehydrogenase-like, mitochondrial OS=Homo sapiens GN=OGDHL PE=1 SV=3

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRI 38
           +TL+L +NPSHLE V PV  GKTKA QF   D  G ++
Sbjct: 353 ITLSLVANPSHLEAVDPVVQGKTKAEQFYRGDAQGKKV 390

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: -

>sp|Q6P6Z8|ODO1_XENLA 2-oxoglutarate dehydrogenase, mitochondrial OS=Xenopus laevis GN=ogdh PE=2 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 25/38 (65%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRI 38
           +TL+L +NPSHLE   PV  GKTKA QF   D  G ++
Sbjct: 365 ITLSLVANPSHLEAADPVVQGKTKAEQFYCGDTEGKKV 402

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
198429807	960	PREDICTED: similar to MGC80496 protein [	0.535	0.039	0.605	0.0001
432876376	1122	PREDICTED: 2-oxoglutarate dehydrogenase,	0.901	0.057	0.421	0.0005
47210299	1070	unnamed protein product [Tetraodon nigro	0.901	0.059	0.421	0.0005

>gi|198429807|ref|XP_002121080.1| PREDICTED: similar to MGC80496 protein [Ciona intestinalis]

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 28/38 (73%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRI 38
           + L+L +NPSHLE V PV  GKTKA QF  NDN GD++
Sbjct: 377 INLSLCANPSHLEAVDPVVQGKTKAEQFYLNDNEGDKV 414

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432876376|ref|XP_004073018.1| PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Oryzias latipes]

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 35/64 (54%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
           +TL+L +NPSHLE V PV  GKTKA QF   DN G R+    L   +     GI    F 
Sbjct: 381 ITLSLVANPSHLEAVDPVVQGKTKAEQFYCGDNDGKRVMSILLHGDAAFAGQGIVYETFH 440

Query: 61  YTEI 64
            +++
Sbjct: 441 LSDL 444

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47210299|emb|CAF94599.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 35/64 (54%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
           +TL+L +NPSHLE V PV  GKTKA QF   DN G R+    L   +     GI    F 
Sbjct: 403 ITLSLVANPSHLEAVDPVVQGKTKAEQFYCGDNDGKRVMSILLHGDAAFAGQGIVYETFH 462

Query: 61  YTEI 64
            +++
Sbjct: 463 LSDL 466

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
ZFIN|ZDB-GENE-030131-2143	1024	ogdha "oxoglutarate (alpha-ket	0.901	0.062	0.406	8.9e-05
UNIPROTKB|E1BTL0	1014	OGDHL "Uncharacterized protein	0.535	0.037	0.578	0.00011
ZFIN|ZDB-GENE-090311-8	1023	ogdhb "oxoglutarate (alpha-ket	0.901	0.062	0.406	0.00011
UNIPROTKB|H9GW68	798	OGDH "Uncharacterized protein"	0.901	0.080	0.375	0.00023
UNIPROTKB|E9PFG7	873	OGDH "2-oxoglutarate dehydroge	0.901	0.073	0.375	0.00025
UNIPROTKB|F5H801	974	OGDH "2-oxoglutarate dehydroge	0.901	0.065	0.375	0.00029
UNIPROTKB|D4A7P8	1013	Ogdh "2-oxoglutarate dehydroge	0.901	0.063	0.375	0.0003
UNIPROTKB|Q148N0	1023	OGDH "2-oxoglutarate dehydroge	0.901	0.062	0.375	0.0003
UNIPROTKB|Q02218	1023	OGDH "2-oxoglutarate dehydroge	0.901	0.062	0.375	0.0003
UNIPROTKB|Q5RCB8	1023	OGDH "2-oxoglutarate dehydroge	0.901	0.062	0.375	0.0003

ZFIN|ZDB-GENE-030131-2143 ogdha "oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide)" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 8.9e-05, P = 8.9e-05
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query:     1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
             +TL+L +NPSHLE V PV  GKTKA QF + D  G R+    L   +     GI    F 
Sbjct:   366 ITLSLVANPSHLEAVNPVVQGKTKAEQFYSGDTDGKRVMSILLHGDAAFAGQGIVYETFH 425

Query:    61 YTEI 64
              +++
Sbjct:   426 LSDL 429

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

UNIPROTKB|E1BTL0 OGDHL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
 Identities = 22/38 (57%), Positives = 27/38 (71%)

Query:     1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRI 38
             +TL+L +NPSHLE V PV  GKTKA QF   D AG ++
Sbjct:   357 ITLSLMANPSHLEAVDPVVQGKTKAEQFYRGDTAGKKV 394

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

ZFIN|ZDB-GENE-090311-8 ogdhb "oxoglutarate (alpha-ketoglutarate) dehydrogenase b (lipoamide)" [Danio rerio (taxid:7955)]

 Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query:     1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
             +TL+L +NPSHLE V PV  GKTKA QF   D  G+R+    L   +     GI    F 
Sbjct:   367 ITLSLVANPSHLEAVDPVVQGKTKAEQFYCGDTDGNRVMSILLHGDAAFAGQGIVYETFH 426

Query:    61 YTEI 64
              +++
Sbjct:   427 LSDL 430

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

UNIPROTKB|H9GW68 OGDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 102 (41.0 bits), Expect = 0.00023, P = 0.00023
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query:     1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
             +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct:   260 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 319

Query:    61 YTEI 64
              +++
Sbjct:   320 LSDL 323

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

UNIPROTKB|E9PFG7 OGDH "2-oxoglutarate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 0.00025, P = 0.00025
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query:     1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
             +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct:   216 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 275

Query:    61 YTEI 64
              +++
Sbjct:   276 LSDL 279

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F5H801 OGDH "2-oxoglutarate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 0.00029, P = 0.00029
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query:     1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
             +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct:   317 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 376

Query:    61 YTEI 64
              +++
Sbjct:   377 LSDL 380

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|D4A7P8 Ogdh "2-oxoglutarate dehydrogenase, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 102 (41.0 bits), Expect = 0.00030, P = 0.00030
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query:     1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
             +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct:   356 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 415

Query:    61 YTEI 64
              +++
Sbjct:   416 LSDL 419

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

UNIPROTKB|Q148N0 OGDH "2-oxoglutarate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 102 (41.0 bits), Expect = 0.00030, P = 0.00030
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query:     1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
             +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct:   366 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 425

Query:    61 YTEI 64
              +++
Sbjct:   426 LSDL 429

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0061034 "olfactory bulb mitral cell layer development" evidence=IEA

GO:0034602 "oxoglutarate dehydrogenase (NAD+) activity" evidence=IEA

GO:0022028 "tangential migration from the subventricular zone to the olfactory bulb" evidence=IEA

GO:0021860 "pyramidal neuron development" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021756 "striatum development" evidence=IEA

GO:0021695 "cerebellar cortex development" evidence=IEA

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

UNIPROTKB|Q02218 OGDH "2-oxoglutarate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 0.00030, P = 0.00030
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query:     1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
             +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct:   366 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 425

Query:    61 YTEI 64
              +++
Sbjct:   426 LSDL 429

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=IEA

GO:0006104 "succinyl-CoA metabolic process" evidence=IEA

GO:0006734 "NADH metabolic process" evidence=IEA

GO:0021695 "cerebellar cortex development" evidence=IEA

GO:0021756 "striatum development" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0021860 "pyramidal neuron development" evidence=IEA

GO:0022028 "tangential migration from the subventricular zone to the olfactory bulb" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0034602 "oxoglutarate dehydrogenase (NAD+) activity" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0061034 "olfactory bulb mitral cell layer development" evidence=IEA

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=ISS

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006099 "tricarboxylic acid cycle" evidence=TAS

GO:0006554 "lysine catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q5RCB8 OGDH "2-oxoglutarate dehydrogenase, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 102 (41.0 bits), Expect = 0.00030, P = 0.00030
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query:     1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFL 60
             +TL+L +NPSHLE   PV +GKTKA QF   D  G ++    L   +     GI    F 
Sbjct:   366 ITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFH 425

Query:    61 YTEI 64
              +++
Sbjct:   426 LSDL 429

GO:0004591 "oxoglutarate dehydrogenase (succinyl-transferring) activity" evidence=ISS

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	71
cd02016	265	cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate	7e-10
PRK09404	924	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 co	9e-08
COG0567	906	COG0567, SucA, 2-oxoglutarate dehydrogenase comple	6e-07
TIGR00239	929	TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenas	5e-05

>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)

 Score = 52.1 bits (126), Expect = 7e-10
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRI 38
           + L+L+ NPSHLE V PV +GKT+A Q    D   D++
Sbjct: 104 VHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKV 141

OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. Length = 265

>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed

 Score = 46.3 bits (111), Expect = 9e-08
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDR 37
           + L+L+ NPSHLE+V PV  G  +A Q    D    +
Sbjct: 305 VHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341

Length = 924

>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

 Score = 44.2 bits (105), Expect = 6e-07
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIA 39
           + L+L+ NPSHLE+V PV  G  +A Q    D   D++ 
Sbjct: 289 VHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVL 327

Length = 906

>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)

Query: 3   LTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITL 52
           L L+ NPSHLE+V PV +G T+A          DR+     S   L I +
Sbjct: 308 LALAFNPSHLEIVSPVVIGSTRARL--------DRLNDSPESTKVLAILI 349

The 2-oxoglutarate dehydrogenase complex consists of this thiamine pyrophosphate-binding subunit (E1), dihydrolipoamide succinyltransferase (E2), and lipoamide dehydrogenase (E3). The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase [Energy metabolism, TCA cycle]. Length = 929

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
KOG0450|consensus	1017		99.97
COG0567	906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	99.96
KOG0451|consensus	913		99.95
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.95
cd02016	265	TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami	99.89
TIGR00239	929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	99.89
PRK09404	924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	99.86
PF00676	300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	98.83
PLN02269	362	Pyruvate dehydrogenase E1 component subunit alpha	98.1
cd02000	293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	97.64
TIGR03182	315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	97.51
PLN02374	433	pyruvate dehydrogenase (acetyl-transferring)	95.15
KOG0225|consensus	394		94.45
TIGR03181	341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	94.26
PF13292	270	DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn	94.1
COG1154	627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	92.79
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	91.5
CHL00149	341	odpA pyruvate dehydrogenase E1 component alpha sub	90.52
cd02007	195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	89.22
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	86.34
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	84.37
COG1071	358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	82.92

>KOG0450|consensus

Probab=99.97  E-value=3.4e-32  Score=225.47  Aligned_cols=66  Identities=35%  Similarity=0.541  Sum_probs=64.5

Q ss_pred             CeEEeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210           1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILH   66 (71)
Q Consensus         1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph   66 (71)
                      |+++|++|||||||+||||+|||||+|++.+|.+++|+|.|||||||||||||||||||.||+||.
T Consensus       365 i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~  430 (1017)
T KOG0450|consen  365 ITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPS  430 (1017)
T ss_pred             eEEEEecCchhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCC
Confidence            689999999999999999999999999999999999999999999999999999999999999995

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

Probab=99.96  E-value=2.4e-30  Score=215.50  Aligned_cols=68  Identities=25%  Similarity=0.299  Sum_probs=65.1

Q ss_pred             CeEEeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCcCcc
Q psy4210           1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHSQ   68 (71)
Q Consensus         1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph~~   68 (71)
                      |+++|++||||||+|||||+|++||+|+.+.|.+.+++|||+|||||||+|||||+||||||+++...
T Consensus       289 v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gys  356 (906)
T COG0567         289 VHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYS  356 (906)
T ss_pred             eEEEecCCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcc
Confidence            68999999999999999999999999999999888999999999999999999999999999998653

>KOG0451|consensus

Probab=99.95  E-value=1.7e-29  Score=207.04  Aligned_cols=67  Identities=28%  Similarity=0.394  Sum_probs=62.9

Q ss_pred             CeEEeecCCCCccccCceeeeeeehhhhhccCC---------CCCeEEeEeeecchhccCcchhHHhhhhccCcCc
Q psy4210           1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDN---------AGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHS   67 (71)
Q Consensus         1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~---------~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph~   67 (71)
                      +|++|++|||||||||||+|||||+||..++++         .++.||++++||||||+|||||+||++||++||-
T Consensus       274 lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHF  349 (913)
T KOG0451|consen  274 LHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHF  349 (913)
T ss_pred             eEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCce
Confidence            589999999999999999999999999988763         3789999999999999999999999999999995

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=99.95  E-value=6.3e-29  Score=210.27  Aligned_cols=67  Identities=24%  Similarity=0.262  Sum_probs=61.8

Q ss_pred             CeEEeecCCCCccccCceeeeeeehhhhhccCC-CCCeEEeEeeecchhccCcchhHHhhhhccCcCc
Q psy4210           1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDN-AGDRIAHPKLSNSSLMITLGIGLPMFLYTEILHS   67 (71)
Q Consensus         1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~-~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph~   67 (71)
                      |.|+|++|||||||||||++|.+|||||.++.. ++..||||+|||||||+|||||+||||||+|..-
T Consensus       610 ~~v~laaNPSHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y  677 (1228)
T PRK12270        610 IKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGY  677 (1228)
T ss_pred             eEEEEecCchhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCC
Confidence            579999999999999999999999999998743 3579999999999999999999999999999763

>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)

Probab=99.89  E-value=3.2e-24  Score=158.89  Aligned_cols=66  Identities=29%  Similarity=0.402  Sum_probs=61.8

Q ss_pred             CeEEeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210           1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILH   66 (71)
Q Consensus         1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph   66 (71)
                      |+++|++||||||+++||++|++||+|++..+.++++.++|.+||||||+|||+++|+|||++||.
T Consensus       104 ~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~  169 (265)
T cd02016         104 VHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPG  169 (265)
T ss_pred             eEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcC
Confidence            478999999999999999999999999997666677899999999999999999999999999985

OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component

Probab=99.89  E-value=2.6e-24  Score=179.76  Aligned_cols=66  Identities=26%  Similarity=0.334  Sum_probs=61.0

Q ss_pred             CeEEeecCCCCccccCceeeeeeehhhhhccC-CCCCeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210           1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTND-NAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILH   66 (71)
Q Consensus         1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d-~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph   66 (71)
                      ++++|++||||||+||||++|++||+|++.++ .+++++++|++||||||+|||+++|+|||+.|+.
T Consensus       306 ~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~  372 (929)
T TIGR00239       306 VHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRG  372 (929)
T ss_pred             ceeeecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcC
Confidence            47899999999999999999999999999765 5577899999999999999999999999998875

The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed

Probab=99.86  E-value=7.5e-23  Score=170.75  Aligned_cols=66  Identities=24%  Similarity=0.316  Sum_probs=62.1

Q ss_pred             CeEEeecCCCCccccCceeeeeeehhhhhccC-CCCCeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210           1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTND-NAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILH   66 (71)
Q Consensus         1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d-~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph   66 (71)
                      ||+++++||||||+|+||++|++||+|++.++ .+++++++|++||||||+|||+++|+|||+.|+.
T Consensus       305 mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~  371 (924)
T PRK09404        305 VHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRG  371 (924)
T ss_pred             eEeeccCCccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcC
Confidence            58899999999999999999999999999877 6778899999999999999999999999999875

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex

Probab=98.83  E-value=7e-10  Score=82.07  Aligned_cols=54  Identities=13%  Similarity=0.089  Sum_probs=44.6

Q ss_pred             EeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCc
Q psy4210           4 TLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL   65 (71)
Q Consensus         4 ~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lp   65 (71)
                      ...++|+|.+  .|++.|.++|.|..     +++.++|.+||||| ++||.++|+|||+.+.
T Consensus        97 ~~~~~~vg~~--~p~a~G~A~a~k~~-----~~~~v~v~~~GDga-~~qG~~~EalN~A~~~  150 (300)
T PF00676_consen   97 LGASSPVGAQ--VPIAAGVALAIKYR-----GKDGVVVCFFGDGA-TSQGDFHEALNLAALW  150 (300)
T ss_dssp             EEEESSTTTH--HHHHHHHHHHHHHT-----TSSEEEEEEEETGG-GGSHHHHHHHHHHHHT
T ss_pred             eecccccccc--CccccchhHhhhhc-----CCceeEEEEecCcc-cccCccHHHHHHHhhc
Confidence            3445555555  99999999999954     46689999999999 9999999999998764

Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....

>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha

Probab=98.10  E-value=1.1e-06  Score=67.47  Aligned_cols=56  Identities=9%  Similarity=0.046  Sum_probs=48.4

Q ss_pred             EeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCc
Q psy4210           4 TLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL   65 (71)
Q Consensus         4 ~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lp   65 (71)
                      .+.+..|+|=.-.|++.|.+.|.|...     ++.+++.+||||| ++||.++|+|||+.+.
T Consensus       132 ~~~~~~~~vG~~~p~A~G~A~A~k~~~-----~~~v~v~~~GDGa-~~eG~~~Ealn~A~~~  187 (362)
T PLN02269        132 NFYGGHGIVGAQVPLGAGLAFAQKYNK-----EENVAFALYGDGA-ANQGQLFEALNIAALW  187 (362)
T ss_pred             CccccCchhhccccHHHHHHHHHHHhC-----CCCeEEEEECCCC-cccCHHHHHHHHhhcc
Confidence            456677889999999999999999863     3468999999999 8999999999998764

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

Probab=97.64  E-value=2e-05  Score=57.69  Aligned_cols=55  Identities=7%  Similarity=0.023  Sum_probs=46.8

Q ss_pred             EeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210           4 TLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus         4 ~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      .+.+..+++-..-|+++|.+.|.+....     +...|.++||||| +||+++|+|++...
T Consensus        98 ~~~~~~g~lG~~~p~a~G~a~a~k~~~~-----~~~vv~~~GDGa~-~~g~~~E~l~~A~~  152 (293)
T cd02000          98 NFFGGNGIVGGQVPLAAGAALALKYRGE-----DRVAVCFFGDGAT-NEGDFHEALNFAAL  152 (293)
T ss_pred             CccccccccccchhHHHHHHHHHHHhCC-----CCEEEEEeCCCcc-ccchHHHHHHHHHh
Confidence            4667889999999999999999987642     3478899999998 79999999998754

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit

Probab=97.51  E-value=3.3e-05  Score=57.57  Aligned_cols=54  Identities=9%  Similarity=0.023  Sum_probs=42.7

Q ss_pred             ecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCc
Q psy4210           6 SSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL   65 (71)
Q Consensus         6 ~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lp   65 (71)
                      ...-+.+=.--|+++|.+.|.|...     .....|.++||||| +||.++|+|++..+.
T Consensus       106 ~~~~g~~G~~lp~AiGaa~A~~~~~-----~~~~vv~~~GDGa~-~~g~~~ealn~A~~~  159 (315)
T TIGR03182       106 YGGHGIVGAQVPLATGLAFANKYRG-----NDNVTACFFGDGAA-NQGQFYESFNMAALW  159 (315)
T ss_pred             ccCcCcccccccHHHHHHHHHHHhC-----CCCEEEEEeCCCcc-cccHHHHHHHHhhcc
Confidence            3444556667799999999998753     23477999999999 599999999997764

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)

Probab=95.15  E-value=0.0064  Score=48.09  Aligned_cols=57  Identities=7%  Similarity=-0.064  Sum_probs=42.4

Q ss_pred             cCCCCccccCceeeeeeehhhhhccCC--CCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210           7 SNPSHLELVYPVNLGKTKAFQFLTNDN--AGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus         7 ~NPSHLEaVnPVv~Gk~RA~Q~~~~d~--~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      ..-+.|-..-|+++|.+.|.+.+....  .......+.+.|||++. +|.++|+||+..+
T Consensus       191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~-eG~f~EaLn~A~~  249 (433)
T PLN02374        191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCN-NGQFFECLNMAAL  249 (433)
T ss_pred             CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccc-cChHHHHHHHHHH
Confidence            444567778899999999988764311  11223457999999995 9999999998754

>KOG0225|consensus

Probab=94.45  E-value=0.019  Score=45.81  Aligned_cols=45  Identities=16%  Similarity=0.145  Sum_probs=36.9

Q ss_pred             ccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210          14 LVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus        14 aVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      |--|+-.|.+-|.++..++     -+++.+-||+| |-||-++|+|||+.|
T Consensus       169 AQiPLGaGia~A~kY~~~~-----~v~~alYGDGA-aNQGQ~fEa~NMA~L  213 (394)
T KOG0225|consen  169 AQIPLGAGIAFAQKYNRED-----AVCFALYGDGA-ANQGQVFEAFNMAAL  213 (394)
T ss_pred             cCCCccccHHHHHHhccCC-----ceEEEEecccc-ccchhHHHHhhHHHH
Confidence            4458888888888776544     58999999999 679999999999754

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit

Probab=94.26  E-value=0.022  Score=43.06  Aligned_cols=47  Identities=9%  Similarity=-0.019  Sum_probs=33.9

Q ss_pred             ccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210          12 LELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus        12 LEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      +=.--|.++|.+-|.+....     ....+.++|||||. +|.++|+|++...
T Consensus       124 vG~~lp~AiGaAla~k~~~~-----~~~vv~~~GDGa~~-~g~~~EaL~tA~~  170 (341)
T TIGR03181       124 IGTQYLHAAGVAYALKLRGE-----DNVAVTYFGDGGTS-EGDFYEALNFAGV  170 (341)
T ss_pred             HhcchhHHHhHHHHHHhhCC-----CCEEEEEecCCccc-cChHHHHHHHHhc
Confidence            33445677787777665432     23678899999996 9999999887654

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B

Probab=94.10  E-value=0.022  Score=43.44  Aligned_cols=38  Identities=11%  Similarity=0.151  Sum_probs=26.2

Q ss_pred             eeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhh
Q psy4210          18 VNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLY   61 (71)
Q Consensus        18 Vv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~l   61 (71)
                      .++|.+.|+....   ...+|++|+  ||||++| |+.||.||-
T Consensus       119 aa~Gma~ar~l~~---~~~~vVaVI--GDGalt~-Gma~EALN~  156 (270)
T PF13292_consen  119 AALGMAVARDLKG---EDRKVVAVI--GDGALTG-GMAFEALNN  156 (270)
T ss_dssp             HHHHHHHHHHHHT---S---EEEEE--ETTGGGS-HHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---CCCcEEEEE--CCcchhH-HHHHHHHHH
Confidence            4567888875443   234565554  9999999 999999974

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

Probab=92.79  E-value=0.056  Score=45.36  Aligned_cols=41  Identities=12%  Similarity=0.162  Sum_probs=30.5

Q ss_pred             ceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210          17 PVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE   63 (71)
Q Consensus        17 PVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~   63 (71)
                      .-++|.+.|+....   +.++|++|+  ||||++| |..+|.||--.
T Consensus       122 SaalG~A~A~~~~g---~~~~vvaVI--GDGAlt~-GmA~EALN~ag  162 (627)
T COG1154         122 SAALGMAKARDLKG---EDRNVVAVI--GDGALTG-GMAFEALNNAG  162 (627)
T ss_pred             HHHhhHHHHHHhcC---CCCcEEEEE--CCccccc-hHHHHHHhhhh
Confidence            45678888876543   335566655  9999999 99999998654

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=91.50  E-value=0.079  Score=44.65  Aligned_cols=39  Identities=15%  Similarity=0.210  Sum_probs=28.0

Q ss_pred             eeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhc
Q psy4210          18 VNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYT   62 (71)
Q Consensus        18 Vv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls   62 (71)
                      .++|.++|+.-..   +..+|++  +=||||++| |+.||.||-.
T Consensus       197 aalG~a~ardl~g---~~~~vva--VIGDGaltg-Gma~EaLN~~  235 (701)
T PLN02225        197 AGLGLAVARDIKG---KRDRVVA--VIDNATITA-GQAYEAMSNA  235 (701)
T ss_pred             HHHHHHHHHHhcC---CCCcEEE--EEcCcchhh-hhHHHHHhhh
Confidence            4678888874432   2345654  459999999 9999999843

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed

Probab=90.52  E-value=0.1  Score=39.66  Aligned_cols=54  Identities=7%  Similarity=-0.028  Sum_probs=35.4

Q ss_pred             CCccccCceeeeeeehhhhhccC--CCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210          10 SHLELVYPVNLGKTKAFQFLTND--NAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus        10 SHLEaVnPVv~Gk~RA~Q~~~~d--~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      +.+=.--|.++|-+-|.+.....  .....-..+.+-|||||. +|..+|+|++..+
T Consensus       128 g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~  183 (341)
T CHL00149        128 AFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVL  183 (341)
T ss_pred             hhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh-hcHHHHHHHHHhh
Confidence            33444457778887776544320  011123567889999997 9999999998654

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

Probab=89.22  E-value=0.19  Score=35.15  Aligned_cols=41  Identities=10%  Similarity=0.115  Sum_probs=28.9

Q ss_pred             ceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210          17 PVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE   63 (71)
Q Consensus        17 PVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~   63 (71)
                      |+.+|.+.|.....   ...+|  +.+-||++|. +|+++|.+++..
T Consensus        82 ~~A~G~Ala~k~~~---~~~~v--v~~~GDG~~~-eG~~~Eal~~A~  122 (195)
T cd02007          82 SAALGMAVARDLKG---KKRKV--IAVIGDGALT-GGMAFEALNNAG  122 (195)
T ss_pred             HHHHHHHHHHHHhC---CCCeE--EEEEcccccc-cChHHHHHHHHH
Confidence            55667776665432   12344  5678999999 999999998753

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=86.34  E-value=0.28  Score=39.72  Aligned_cols=49  Identities=12%  Similarity=0.045  Sum_probs=34.1

Q ss_pred             CCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210          10 SHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus        10 SHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      +|.=+-=|++.|.+.|++.+..   ..+  -+.+-||||+. +|..+|.||+...
T Consensus       113 g~~~~~ls~A~G~A~A~k~~~~---~~~--vv~~iGDG~~~-eG~~~EAln~A~~  161 (581)
T PRK12315        113 GHTSTSIALATGLAKARDLKGE---KGN--IIAVIGDGSLS-GGLALEGLNNAAE  161 (581)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCC---CCe--EEEEECchhhh-cchHHHHHHHHHh
Confidence            3433445677888888765432   233  45677999998 6999999998653

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=84.37  E-value=0.42  Score=39.85  Aligned_cols=41  Identities=10%  Similarity=0.114  Sum_probs=30.0

Q ss_pred             ceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210          17 PVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE   63 (71)
Q Consensus        17 PVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~   63 (71)
                      ++.+|.+.|+...   +...+|.+|+  |||++.+ |.+||.++...
T Consensus       184 S~a~GmA~a~~l~---g~~~~v~~vi--GDGel~e-G~~wEAl~~a~  224 (641)
T PLN02234        184 SAGLGMAVGRDLK---GMNNSVVSVI--GDGAMTA-GQAYEAMNNAG  224 (641)
T ss_pred             HHHHHHHHHHHhC---CCCCeEEEEE--ccchhhh-HHHHHHHHHHh
Confidence            4677888877543   2345676554  9999996 99999998754

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

Probab=82.92  E-value=0.51  Score=37.12  Aligned_cols=46  Identities=9%  Similarity=0.051  Sum_probs=34.5

Q ss_pred             ccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210          14 LVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus        14 aVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      +--|.+.|.+-|.+.+..+    .-+.+..=||+|-+ ||-.+|+|||..+
T Consensus       140 ~Q~~~AaG~A~a~k~~~~~----~~Va~~~~GDGat~-qG~FhEalN~A~v  185 (358)
T COG1071         140 TQIPLAAGAALALKYRGTK----DGVAVAFFGDGATN-QGDFHEALNFAAV  185 (358)
T ss_pred             ccccHHHHHHHHHHHhCCC----CcEEEEEecCCccc-cchHHHHHHHHHH
Confidence            3456677777777766422    22788889999987 9999999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	1e-09
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	5e-08
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	7e-08

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Length = 933

 Score = 51.1 bits (123), Expect = 1e-09
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRI 38
           + L L+ NPSHLE+V PV +G  +A     ++ + +++
Sbjct: 312 VHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKV 349

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Length = 868

 Score = 46.4 bits (111), Expect = 5e-08
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPK 42
           + ++L++NPSHLE V PV  G  +A Q L +           
Sbjct: 236 IEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFS 277

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score = 46.0 bits (110), Expect = 7e-08
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 1   MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPK 42
           + ++L++NPSHLE V PV  G  +A Q L +           
Sbjct: 481 IEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFS 522

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	99.57
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	99.57
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	99.52
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	98.45
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	98.2
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	98.2
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	98.08
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	98.07
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	83.55

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=99.57  E-value=3.6e-16  Score=128.16  Aligned_cols=66  Identities=24%  Similarity=0.252  Sum_probs=58.9

Q ss_pred             CeEEeecCCCCccccCceeeeeeehhhhhccCCCC-----CeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210           1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAG-----DRIAHPKLSNSSLMITLGIGLPMFLYTEILH   66 (71)
Q Consensus         1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~-----~~vlpiliHGDAAf~GQGvv~Etl~ls~lph   66 (71)
                      +++++++|||||+++.|+++|.++|+|++.++.++     .+.+++.+||||||++||+++|+|||+.+..
T Consensus       236 v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~  306 (868)
T 2yic_A          236 IEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRG  306 (868)
T ss_dssp             EEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTT
T ss_pred             eeeeecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcC
Confidence            46899999999999999999999999987654333     6789999999999999999999999998754

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=99.57  E-value=3.2e-16  Score=129.41  Aligned_cols=66  Identities=21%  Similarity=0.312  Sum_probs=59.9

Q ss_pred             CeEEeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210           1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEILH   66 (71)
Q Consensus         1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lph   66 (71)
                      +++++++|||||+++.|+++|.++|+|++.++.++.+.++|.+||||||++||+++|+||++.+..
T Consensus       312 ~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~  377 (933)
T 2jgd_A          312 VHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARG  377 (933)
T ss_dssp             EEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTT
T ss_pred             eEEeecccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccC
Confidence            478899999999999999999999999886555567899999999999999999999999998764

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=99.52  E-value=1.7e-15  Score=126.68  Aligned_cols=66  Identities=24%  Similarity=0.252  Sum_probs=58.5

Q ss_pred             CeEEeecCCCCccccCceeeeeeehhhhhccCCCC-----CeEEeEeeecchhccCcchhHHhhhhccCcC
Q psy4210           1 MTLTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAG-----DRIAHPKLSNSSLMITLGIGLPMFLYTEILH   66 (71)
Q Consensus         1 v~v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~-----~~vlpiliHGDAAf~GQGvv~Etl~ls~lph   66 (71)
                      +++++++|||||+++.|+++|.++|+|++.++.++     .+.+++.+||||||++||+++|+|||+.+..
T Consensus       481 v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~  551 (1113)
T 2xt6_A          481 IEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRG  551 (1113)
T ss_dssp             EEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTT
T ss_pred             eeeeecCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcC
Confidence            36899999999999999999999999997644333     6789999999999999999999999998754

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*

Probab=98.45  E-value=2.1e-08  Score=74.89  Aligned_cols=57  Identities=5%  Similarity=-0.022  Sum_probs=48.7

Q ss_pred             EEeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCc
Q psy4210           3 LTLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL   65 (71)
Q Consensus         3 v~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lp   65 (71)
                      ..+.+|++||....|+++|.++|.+...     .....|.++|||||. ||+++|+|++....
T Consensus       135 ~~~~~~~g~lG~~lp~AvG~A~A~~~~~-----~~~~vv~i~GDGa~~-~G~~~Eal~~A~~~  191 (368)
T 1w85_A          135 VNVLPPQIIIGAQYIQAAGVALGLKMRG-----KKAVAITYTGDGGTS-QGDFYEGINFAGAF  191 (368)
T ss_dssp             CCBCCCCCSTTHHHHHHHHHHHHHHHTT-----CSCCEEEEEETGGGG-SHHHHHHHHHHHHT
T ss_pred             cccCCCccccCccccHHHHHHHHhHhhC-----CCCeEEEEEchhhhh-hcHHHHHHHHHHHH
Confidence            4578899999999999999999998753     234688999999999 99999999987543

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...

Probab=98.20  E-value=2.2e-07  Score=69.99  Aligned_cols=54  Identities=13%  Similarity=0.029  Sum_probs=46.7

Q ss_pred             eecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210           5 LSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus         5 l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      +..+++||....|+++|.+.|.+...     .....+.++||||| +||+++|+|+++..
T Consensus       157 ~~~~~g~lG~~lp~AvG~AlA~~~~~-----~~~~vv~~~GDGa~-~~G~~~Eal~~A~~  210 (400)
T 2bfd_A          157 FVTISSPLATQIPQAVGAAYAAKRAN-----ANRVVICYFGEGAA-SEGDAHAGFNFAAT  210 (400)
T ss_dssp             BCCCCSSTTTHHHHHHHHHHHHHHHT-----CCCCEEEEEETTGG-GSHHHHHHHHHHHH
T ss_pred             ccccCccccccccHHHHHHHhhhhhC-----CCCeEEEEECchhh-hcChHHHHHHHHHH
Confidence            57889999999999999999998763     23467899999999 89999999998754

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A

Probab=98.20  E-value=2.2e-07  Score=70.51  Aligned_cols=55  Identities=7%  Similarity=-0.014  Sum_probs=47.0

Q ss_pred             EeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210           4 TLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus         4 ~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      .+.+|++||....|+++|.++|.+...     .....|.++||||| +||.++|+|+++..
T Consensus       175 ~~~~~~g~lG~~lp~AvGaA~A~k~~~-----~~~~vv~i~GDGa~-~~G~~~Eal~~A~~  229 (407)
T 1qs0_A          175 GFFTISGNLATQFVQAVGWAMASAIKG-----DTKIASAWIGDGAT-AESDFHTALTFAHV  229 (407)
T ss_dssp             TBCCCCSSSSHHHHHHHHHHHHHHHTT-----CCCCEEEEEETGGG-GSHHHHHHHHHHHH
T ss_pred             CccccccccccchhHHHHHHHHHHHhC-----CCCEEEEEECCchh-hcChHHHHHHHHHH
Confidence            467899999999999999999998753     23478999999995 79999999998753

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*

Probab=98.08  E-value=7.1e-07  Score=65.97  Aligned_cols=54  Identities=9%  Similarity=0.019  Sum_probs=45.6

Q ss_pred             EeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210           4 TLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE   63 (71)
Q Consensus         4 ~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~   63 (71)
                      .+.++++||....|+++|.+.|.+....     ....|.++||||| ++|+++|+|++..
T Consensus       138 ~~~~~~g~lG~~l~~a~G~A~a~k~~~~-----~~~vv~i~GDGa~-~~G~~~Eal~~A~  191 (367)
T 1umd_A          138 NFFTVASPIASHVPPAAGAAISMKLLRT-----GQVAVCTFGDGAT-SEGDWYAGINFAA  191 (367)
T ss_dssp             TBCCCCSSTTTTHHHHHHHHHHHHHTTC-----CCCEEEEEETGGG-GSHHHHHHHHHHH
T ss_pred             CcCCCCchhhhhhhHHHHHHHHHHHhCC-----CCeEEEEEccccc-ccCcHHHHHHHHH
Confidence            3567999999999999999999887532     2367899999999 8999999888764

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*

Probab=98.07  E-value=5.1e-07  Score=67.52  Aligned_cols=54  Identities=9%  Similarity=0.059  Sum_probs=44.8

Q ss_pred             ecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCc
Q psy4210           6 SSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL   65 (71)
Q Consensus         6 ~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lp   65 (71)
                      ..+.+++-...|+++|.++|++...     .+..+|.+||||| ++||+++|+|+++.+.
T Consensus       136 ~~~~g~~G~~lp~A~G~A~A~~~~~-----~~~~vv~~~GDGa-~~~G~~~Ealn~A~~~  189 (365)
T 2ozl_A          136 YGGNGIVGAQVPLGAGIALACKYNG-----KDEVCLTLYGDGA-ANQGQIFEAYNMAALW  189 (365)
T ss_dssp             CCCCCSTTTHHHHHHHHHHHHHHHT-----CCCCEEEEEETTG-GGCHHHHHHHHHHHHT
T ss_pred             CCCcchhhhhhHHHHHHHHHHHhcC-----CCceEEEEECchh-hhccHHHHHHHHHHHH
Confidence            4556889999999999999998762     3357899999999 5699999999988543

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=83.55  E-value=0.3  Score=38.35  Aligned_cols=43  Identities=12%  Similarity=0.092  Sum_probs=29.8

Q ss_pred             CceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhcc
Q psy4210          16 YPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTE   63 (71)
Q Consensus        16 nPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~   63 (71)
                      -|.++|.+.|......  ...+|  +.+-|||+|. +|+.+|.+++..
T Consensus       127 l~~A~G~AlA~~~~~~--~~~~v--v~v~GDG~~~-eG~~~Eal~~A~  169 (616)
T 3mos_A          127 LGAACGMAYTGKYFDK--ASYRV--YCLLGDGELS-EGSVWEAMAFAS  169 (616)
T ss_dssp             HHHHHHHHHHHHHTSC--CSCCE--EEEEETGGGG-SHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCC--CCCEE--EEEECccccc-cCcHHHHHHHHH
Confidence            3567788877654322  12344  5678999998 799999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d2ozla1	361	E1-beta subunit of pyruvate dehydrogenase (PP modu	97.23
d1umda_	362	Branched-chain alpha-keto acid dehydrogenase, PP m	97.11
d2bfda1	395	Branched-chain alpha-keto acid dehydrogenase, PP m	96.09
d1w85a_	365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	95.75
d1qs0a_	407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	93.95

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=2.5e-05  Score=56.52  Aligned_cols=52  Identities=10%  Similarity=0.059  Sum_probs=44.4

Q ss_pred             cCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210           7 SNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus         7 ~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      .-.|++.+.-|++.|.+.|.+....     +-+.+...||||+. ||..+|+||++.+
T Consensus       133 ~~~~ivg~~~p~A~G~A~a~k~~~~-----~~v~~~~~GDGa~~-eG~f~Ealn~A~~  184 (361)
T d2ozla1         133 GGNGIVGAQVPLGAGIALACKYNGK-----DEVCLTLYGDGAAN-QGQIFEAYNMAAL  184 (361)
T ss_dssp             CCCCSTTTHHHHHHHHHHHHHHHTC-----CCCEEEEEETTGGG-CHHHHHHHHHHHH
T ss_pred             CccccccccchhHHHHHHHhhhccC-----CCeEEEEecCCCcc-Ccchhhhhhhhhh
Confidence            3468899999999999999988643     34889999999998 9999999999754

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=4e-05  Score=55.50  Aligned_cols=54  Identities=9%  Similarity=0.032  Sum_probs=44.4

Q ss_pred             eecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210           5 LSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus         5 l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      +....+.+-+.-|++.|.+-|.+...     ++-+.+..+||||+ .||..+|+|||+.+
T Consensus       134 ~~~~~~ivg~~~p~a~G~A~a~k~~~-----~~~v~v~~~GDGa~-~eG~f~Ealn~A~~  187 (362)
T d1umda_         134 FFTVASPIASHVPPAAGAAISMKLLR-----TGQVAVCTFGDGAT-SEGDWYAGINFAAV  187 (362)
T ss_dssp             BCCCCSSTTTTHHHHHHHHHHHHHTT-----CCCCEEEEEETGGG-GSHHHHHHHHHHHH
T ss_pred             cccccccccccchHHHHHHHhhhccc-----ccceeeeeccCCcc-cCCchHHHHHHhhh
Confidence            35566778888899999998887764     34578999999999 59999999999865

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0004  Score=50.88  Aligned_cols=50  Identities=14%  Similarity=0.011  Sum_probs=39.3

Q ss_pred             CCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210           9 PSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus         9 PSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      -|.+=+.-|++.|.+-|.+....     +-+.+...||||++ ||..+|+|||+.+
T Consensus       156 ~~ivg~~~p~A~G~A~a~k~~~~-----~~v~v~~~GDGa~~-eG~f~EalN~A~~  205 (395)
T d2bfda1         156 SSPLATQIPQAVGAAYAAKRANA-----NRVVICYFGEGAAS-EGDAHAGFNFAAT  205 (395)
T ss_dssp             CSSTTTHHHHHHHHHHHHHHHTC-----CCCEEEEEETTGGG-SHHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHhhhcCc-----ccccccccCCCCcc-chhHHHHHHHHhh
Confidence            35566667888999988876532     23678899999996 9999999999865

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.75  E-value=0.00073  Score=48.91  Aligned_cols=55  Identities=5%  Similarity=-0.026  Sum_probs=44.1

Q ss_pred             EeecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccC
Q psy4210           4 TLSSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEI   64 (71)
Q Consensus         4 ~l~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~l   64 (71)
                      .+.+.-+.+-+.-|++.|.+-|.+...     ++-+.+...|||| +.||..+|+|||+.+
T Consensus       133 ~~~~~~~ivG~~~p~AvG~A~a~k~~~-----~~~v~v~~~GDGa-~~eG~f~EalN~A~~  187 (365)
T d1w85a_         133 NVLPPQIIIGAQYIQAAGVALGLKMRG-----KKAVAITYTGDGG-TSQGDFYEGINFAGA  187 (365)
T ss_dssp             CBCCCCCSTTHHHHHHHHHHHHHHHTT-----CSCCEEEEEETGG-GGSHHHHHHHHHHHH
T ss_pred             eeeccccccCccccchhhHHhhhhhcc-----cCCceeeeccCCc-ccchhHHHHHHHhhh
Confidence            345566778888899999999987653     2337889999999 679999999999764

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

Probab=93.95  E-value=0.0042  Score=45.63  Aligned_cols=54  Identities=6%  Similarity=-0.036  Sum_probs=40.4

Q ss_pred             ecCCCCccccCceeeeeeehhhhhccCCCCCeEEeEeeecchhccCcchhHHhhhhccCc
Q psy4210           6 SSNPSHLELVYPVNLGKTKAFQFLTNDNAGDRIAHPKLSNSSLMITLGIGLPMFLYTEIL   65 (71)
Q Consensus         6 ~~NPSHLEaVnPVv~Gk~RA~Q~~~~d~~~~~vlpiliHGDAAf~GQGvv~Etl~ls~lp   65 (71)
                      .+..|.+-+--|++.|.+-|.+.+..     .-+.+...|||| +.||..+|+|||+.+.
T Consensus       177 ~~~s~~vg~q~p~AvG~A~a~k~~~~-----~~v~v~~~GDGa-~~eG~f~EalN~A~~~  230 (407)
T d1qs0a_         177 FTISGNLATQFVQAVGWAMASAIKGD-----TKIASAWIGDGA-TAESDFHTALTFAHVY  230 (407)
T ss_dssp             CCCCSSSSHHHHHHHHHHHHHHHTTC-----CCCEEEEEETGG-GGSHHHHHHHHHHHHH
T ss_pred             eccccccccccchhhhhHHHHhhccC-----cceecccccccc-cccchHHHHHHHHhcc
Confidence            34456667777888898888766532     235678899999 5699999999998653