Psyllid ID: psy4222

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MSVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVNFDTLSLSSHSNGSPESNSSSVTSMSHLLIEKSCE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHcccccccHHHHHHHcccHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccccccccEEEcccccccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccHcccccccccccccccccccccccccEEEEEEEcccccccccccccccccEcccHHHHHHHHHHHHccHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccEEEcccccccHHHccccccHHHHHHHcccHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHcccHHHHHHHHcccccccccccccccccHccccccHHHHHHHHHccccHHHccccccccccccccccccccHHHHHcccccccEcccccccccccccccccEEEEEEEccccc
Coil and Loop (DISEMBL)
msvcfkmpsvdsmgplstkltptkvatksegteeGIYFAVYIpsellggyenefsecerVFDNKEEALLFIKKNKKIRFKSFRnfqdaqnfayhgscgvntslleapaspstvtaadpsalpqmsslaaaekpspfkslksQELVKLRKLIEKGNLADVRKlvwdnprylvssgdfptilhegcrynalhvstkavNPAMTEMLLEIIgnpaftnllydsdtpsyierSDILLDLYvntpdkalnetplhfaakFGSVECVKRLIGCAKIqtsvrnkegktpldsssgldlLENYLHTKLLDTVAakkdetngntvdqpsvdmispiEKLCVnfdtlslsshsngspesnsssvtSMSHLLIEKSCE
Flexible Loop (DISEMBL)
msvcfkmpsvdsmgplstkltptkvatksegteegiYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAaaekpspfkslksqELVKLRKLiekgnladvrklvwdnpryLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAkiqtsvrnkegktpldsssglDLLENYLHTKLLDTVaakkdetngntvdqpsvdmisPIEKLCVNFDTLSLSSHsngspesnsssvtsmshllieksce
Low Complexity Region (SEG)
MSVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVNFDTLslsshsngspesnsssvtsmsHLLIEKSCE
Disordered region (IsUnstruct)
*********************************EGIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSL****************************************LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTS***************LDLLENYLHTKLLDTVA*****************MISPIEKLCVNFDTL******************************
Disordered Region (DISOPRED)
***CFKM****************************IYFAVYIPSEL***********ERVFDNKEEALLF****************DAQNFAYHGSCGV**********************************************KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAA******************************************************LI*****
Disordered Region (DISEMBL)
MSVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAP************ALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV***********SSGLDLLENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVNFDTLS*********************LLIEKSCE
Disordered Region (DISPRO)
********************************EEGIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTS********************************PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVNFDTLSLSSHSNGSPESNSSSVTSMSHLLIEKSCE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVNFDTLSLSSHSNGSPESNSSSVTSMSHLLIEKSCE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q7TP65	964	Ankyrin repeat and LEM do	yes	N/A	0.637	0.242	0.399	2e-38
Q6P1H6	964	Ankyrin repeat and LEM do	yes	N/A	0.632	0.240	0.402	9e-38
Q86XL3	938	Ankyrin repeat and LEM do	yes	N/A	0.637	0.249	0.388	3e-37
H2KZB2	603	Ankyrin repeat and LEM do	yes	N/A	0.615	0.374	0.326	2e-28
Q5BKI6	318	Ankyrin repeat domain-con	no	N/A	0.324	0.374	0.315	2e-05
Q4KL97	318	Ankyrin repeat domain-con	N/A	N/A	0.305	0.352	0.317	9e-05

>sp|Q7TP65|ANKL2_RAT Ankyrin repeat and LEM domain-containing protein 2 OS=Rattus norvegicus GN=Ankle2 PE=2 SV=2

 Score =  160 bits (405), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 14/248 (5%)

Query: 50  YENEFSECER--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA-----YHGSCGVNTS 102
           YE+     ER  V+++K+EAL  +K  K  RFK+F   +DA+ FA     Y  S   N S
Sbjct: 214 YEDGLVRHERIHVYEDKKEALQAVKLIKGSRFKAFPTREDAEKFARGICDYLPSPSKNMS 273

Query: 103 LLE----APASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQEL-VKLRKLIEKGNLA 157
           LL      P   +    AD   L + S     E+ + +K+ ++Q+L  KLRK +E+G   
Sbjct: 274 LLSPVKAMPLCSNDGPKADGLCLAE-SETVNKERANSYKNPRTQDLTAKLRKAVERGEEH 332

Query: 158 DVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL 217
               L+W NPRYL+ SGD PTI+ EGCRYN +HV+ K    ++ ++ LE + NP F  L+
Sbjct: 333 TFSDLIWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAKENQASVCQLTLETLENPEFMRLM 392

Query: 218 YDSDTPSYIERSDI-LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN 276
           Y  D    +++  + ++DLY+NTPDK   +TPLHFA KFG+V+ V  L     I  + RN
Sbjct: 393 YPDDNMDMLQKRILYIVDLYLNTPDKVGFDTPLHFACKFGNVDVVNVLSSHPLIVKNPRN 452

Query: 277 KEGKTPLD 284
           K GKTP D
Sbjct: 453 KYGKTPED 460

Rattus norvegicus (taxid: 10116)

>sp|Q6P1H6|ANKL2_MOUSE Ankyrin repeat and LEM domain-containing protein 2 OS=Mus musculus GN=Ankle2 PE=2 SV=2

 Score =  157 bits (398), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 99/246 (40%), Positives = 138/246 (56%), Gaps = 14/246 (5%)

Query: 50  YENEFSECER--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA-----YHGSCGVNTS 102
           YE+     ER  V+++K+EAL   K  K  RFK+FR  +DA+ FA     Y  S    T 
Sbjct: 213 YEDGPVRHERIHVYEDKKEALQAAKLIKGSRFKAFRTREDAEKFARGICDYLPSPNKTTP 272

Query: 103 LLE----APASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQEL-VKLRKLIEKGNLA 157
           LL      P   S    AD   L + S     E+ + +K+ ++Q+L  KLRK +E G   
Sbjct: 273 LLSPVKAVPLGGSDGLKADGLCLAE-SETVNKERANSYKNPRTQDLTAKLRKAVENGEEH 331

Query: 158 DVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL 217
               L+W NPRYL+ SGD PTI+ EGCRYN +HV+ K    +M ++ LE + NP F  L+
Sbjct: 332 TFSDLIWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAKENQASMCQLTLETLENPEFMRLM 391

Query: 218 YDSDTPSYIERSDI-LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN 276
           Y  D    +++  + ++DLY+NTPDK   +TPLHFA KFG+V+ V  L     I  + +N
Sbjct: 392 YPDDNMDMLQKRILYVVDLYLNTPDKVGFDTPLHFACKFGNVDVVNVLSSHPLIVKNRKN 451

Query: 277 KEGKTP 282
           K GKTP
Sbjct: 452 KYGKTP 457

Mus musculus (taxid: 10090)

>sp|Q86XL3|ANKL2_HUMAN Ankyrin repeat and LEM domain-containing protein 2 OS=Homo sapiens GN=ANKLE2 PE=1 SV=4

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 140/247 (56%), Gaps = 13/247 (5%)

Query: 50  YENEFSECER--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV-----NTS 102
           YE+  +  ER  V++NK+EAL  +K  K  RFK+F   +DA+ FA  G C        TS
Sbjct: 206 YEDVPARNERIYVYENKKEALQAVKMIKGSRFKAFSTREDAEKFA-RGICDYFPSPSKTS 264

Query: 103 LLEAPASPSTVTAAD---PSALPQMSSLAAAEKPSPFKSLKSQEL-VKLRKLIEKGNLAD 158
           L  +P   + + + D          S     E+ + +K+ ++Q+L  KLRK +EKG    
Sbjct: 265 LPLSPVKTAPLFSNDRLKDGLCLSESETVNKERANSYKNPRTQDLTAKLRKAVEKGEEDT 324

Query: 159 VRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY 218
              L+W NPRYL+ SGD PTI+ EGCRYN +HV+ K    ++ ++ L+++ NP F  L+Y
Sbjct: 325 FSDLIWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAKENQASICQLTLDVLENPDFMRLMY 384

Query: 219 DSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK 277
             D  + ++ R   ++DLY+NTPDK   +TPLHFA KFG+ + V  L     I  + RNK
Sbjct: 385 PDDDEAMLQKRIRYVVDLYLNTPDKMGYDTPLHFACKFGNADVVNVLSSHHLIVKNSRNK 444

Query: 278 EGKTPLD 284
             KTP D
Sbjct: 445 YDKTPED 451

Homo sapiens (taxid: 9606)

>sp|H2KZB2|ANKL2_CAEEL Ankyrin repeat and LEM domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=lem-4l PE=1 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 129/254 (50%), Gaps = 28/254 (11%)

Query: 34  EGIYFAVYIPSELLGGYENEFSECERV--FDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 91
           EG  +  Y   ++L    + +   + V  F N  E      K+   RFK F   ++A +F
Sbjct: 33  EGPVYVAYSMEDMLKSPRDLYKSVKEVAKFVNSAEG-----KSMSARFKKFGTPREAMDF 87

Query: 92  AYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLI 151
             +G         +AP +P TV    P+           E  SPF  +   ++ + +K +
Sbjct: 88  LAYG---------DAPTTPKTVPPVAPT-----------EPNSPFSGVNRIQMNEFKKYV 127

Query: 152 EKGNLADVRKLVWDNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN 210
           EKG++ +  +LV  NPR+LV++G D  +I+ EG RYNALH++ KA    +   +LE+I N
Sbjct: 128 EKGDMENFLRLVDSNPRFLVNTGGDVASIVMEGFRYNALHIAAKAGQTEIIAKILELIQN 187

Query: 211 PAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKI 270
             F   LY +       R   +LD Y+NTPDK  ++TPLHFA+KFG +  V+ L   +  
Sbjct: 188 IDFLIRLYGTGADDVTLRKINILDSYLNTPDKGNSDTPLHFASKFGKIGVVRVLTENSAT 247

Query: 271 QTSVRNKEGKTPLD 284
             ++ NK GK+ LD
Sbjct: 248 DRTLLNKSGKSALD 261

Involved in mitotic nuclear envelope reassembly by promoting dephosphorylation of baf-1 during mitotic exit. Coordinates the control of baf-1 dephosphorylation by inhibiting VRK1 kinase and promoting dephosphorylation of baf-1 by protein phosphatase 2A (PP2A), thereby facilitating nuclear envelope assembly. It is unclear whether it acts as a real PP2A regulatory subunit or whether it is involved in recruitment of the PP2A complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5BKI6|ANKR1_XENTR Ankyrin repeat domain-containing protein 1 OS=Xenopus tropicalis GN=ankrd1 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 168 RYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL-----YDSDT 222
           +YL   GD P    E  R  ALH +    +  M E L+E   N  F ++L     + +  
Sbjct: 137 KYLADGGD-PNTCDEYKR-TALHRACSEGHTDMVEKLIEAGANIEFKDMLESTALHWTCR 194

Query: 223 PSYIERSDILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK 280
              +E   +LL+    +N  DK L+ TPLH A + G  EC + LI C +     R++EG 
Sbjct: 195 GGSVETLKLLLNKGAAINARDKLLS-TPLHVAVRTGHYECAEHLIAC-EADLHARDREGD 252

Query: 281 TPLDSSSGLD 290
           TP+     L+
Sbjct: 253 TPMHDGVRLN 262

May act as a nuclear transcription factor that negatively regulates the expression of cardiac genes.

Xenopus tropicalis (taxid: 8364)

>sp|Q4KL97|ANKR1_XENLA Ankyrin repeat domain-containing protein 1 OS=Xenopus laevis GN=ankrd1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 11/123 (8%)

Query: 168 RYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL-----YDSDT 222
           +YL   GD P    E  R  ALH +    + A+ E L+E   N  F ++L     + +  
Sbjct: 137 KYLADGGD-PNTCDEYKR-TALHRACSEGHTAIVEKLIEAGANIEFKDMLESTALHWTCR 194

Query: 223 PSYIERSDILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK 280
              +E   +LL+    +N  DK L+ TPLH A + G  EC + LI C +   + +++EG 
Sbjct: 195 GGSVETLKLLLNKGAAINARDKLLS-TPLHVAVRTGYYECGEHLIAC-EADLNAKDREGD 252

Query: 281 TPL 283
           TP+
Sbjct: 253 TPM 255

May act as a nuclear transcription factor that negatively regulates the expression of cardiac genes.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
91080401	815	PREDICTED: similar to ANK repeat and LEM	0.828	0.373	0.398	2e-54
345489008	575	PREDICTED: ankyrin repeat and LEM domain	0.634	0.405	0.444	2e-50
340715082	570	PREDICTED: ankyrin repeat and LEM domain	0.659	0.424	0.424	2e-48
350414585	571	PREDICTED: ankyrin repeat and LEM domain	0.659	0.423	0.428	2e-48
357614607	1337	hypothetical protein KGM_15711 [Danaus p	0.697	0.191	0.398	1e-47
307198922	583	Ankyrin repeat and LEM domain-containing	0.648	0.408	0.405	4e-46
194674594	958	PREDICTED: ankyrin repeat and LEM domain	0.634	0.243	0.426	1e-41
157131979	1151	hypothetical protein AaeL_AAEL012290 [Ae	0.618	0.197	0.451	1e-41
187608335	961	ankyrin repeat and LEM domain-containing	0.634	0.242	0.405	9e-41
332024003	597	Ankyrin repeat and LEM domain-containing	0.629	0.386	0.396	4e-40

>gi|91080401|ref|XP_966987.1| PREDICTED: similar to ANK repeat and LEM domain-containing protein KIAA0692 [Tribolium castaneum] gi|270005746|gb|EFA02194.1| hypothetical protein TcasGA2_TC007850 [Tribolium castaneum]

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 189/336 (56%), Gaps = 32/336 (9%)

Query: 26  ATKSEGTEEGIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNF 85
           A  SE    G +++V+IP ++    +     C+ ++ +K EA+  +KK KK RFK F  F
Sbjct: 19  ADNSEPPVSGHFYSVFIPHDVR---QKGTQTCDYIYKDKAEAMKMVKKTKKARFKHFEFF 75

Query: 86  QDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELV 145
            DA  FA  G+        E P SP  V  +    +  ++S    E+ SPFK  K Q+LV
Sbjct: 76  HDALKFASVGAA-------ETPNSPPVVNGS----VKGLNSQVVNERLSPFKGPKPQDLV 124

Query: 146 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLL 205
           KLRK IE G++   R+ VW+NPRYL+SSGD P+IL EG RYNALHV+ KA +  +TE++L
Sbjct: 125 KLRKAIETGDVDTFRQAVWENPRYLISSGDTPSILQEGFRYNALHVAAKAKSGILTEVIL 184

Query: 206 EIIGNPAFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRL 264
             I NP F  LLY  D    +E R  +LLDLY+NTPDK LNETPLHFAAKFG+V+ V+ L
Sbjct: 185 NTISNPKFVKLLYGDDVNENVESRIQVLLDLYLNTPDKGLNETPLHFAAKFGAVDVVEVL 244

Query: 265 IGCAKIQTSVRNKEGKTP-------LDSSSGLDLLENYLHTKLLDT----VAAKKDETNG 313
           +   +   S++NK G+TP        D+  G  +++  +   L ++    V   +D++  
Sbjct: 245 VSFPECDKSLKNKYGQTPDMIICDRCDNIEGASIIKKKIALHLENSYYVPVLRAEDDSVA 304

Query: 314 NTVDQPSVDMISPIEKLCVNFDTLS--LSSHSNGSP 347
             + +P     SP     VN D LS  L  H+   P
Sbjct: 305 PVIGEP----FSPGRSQVVNKDPLSPRLEIHAFAGP 336

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489008|ref|XP_001602806.2| PREDICTED: ankyrin repeat and LEM domain-containing protein 2-like [Nasonia vitripennis]

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/252 (44%), Positives = 162/252 (64%), Gaps = 19/252 (7%)

Query: 36  IYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHG 95
           ++ AVY+P E     ++E S+   ++ +K EAL  IKK+KK R K+F+  ++AQ FA +G
Sbjct: 11  VFHAVYVPLEDEIADDDE-SQVLHIYRDKLEALKVIKKHKKGRLKTFKTLEEAQEFARNG 69

Query: 96  SCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGN 155
                 S+L  P +         +++P++  +   EK S FK+ K Q L + RK+IE G+
Sbjct: 70  L----ESVLVNPLA---------NSVPKI--VVTEEKSSNFKAPKPQNLTQFRKIIEYGD 114

Query: 156 LADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN-PAMTEMLLEIIGNPAFT 214
           + +VRK +WDNPRYL+ SGD P ILHEGCRYNALH++ K+   P M E++L  +G+PAF 
Sbjct: 115 IENVRKTIWDNPRYLIGSGDTPAILHEGCRYNALHIAVKSTQSPQMCELILNTVGDPAFV 174

Query: 215 NLLY-DSD-TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQT 272
            L Y D+D   +Y++R+ IL DLY+NTPDK LNETPLHFA KFG  +CV+ L+   +   
Sbjct: 175 KLFYGDADEMRTYVDRASILQDLYLNTPDKGLNETPLHFATKFGLKDCVRTLLSYQQCLK 234

Query: 273 SVRNKEGKTPLD 284
           +  NK  +TP D
Sbjct: 235 TPLNKYHQTPGD 246

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715082|ref|XP_003396049.1| PREDICTED: ankyrin repeat and LEM domain-containing protein 2-like [Bombus terrestris]

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/264 (42%), Positives = 153/264 (57%), Gaps = 22/264 (8%)

Query: 25  VATKSEGTEEGIYFAVYIPSELL-GGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFR 83
           +   S  + E IY AVYIP E +    EN   E  RV+ +K EAL  IK+ K  R KSF+
Sbjct: 11  IHGNSNVSNEIIYHAVYIPEENIDSSIENSIKENIRVYQDKAEALKIIKEFKTGRLKSFK 70

Query: 84  NFQDAQNFAYHG---SCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLK 140
              +A+ +A  G   S  VN++L+  P  P                    EK + FK+ +
Sbjct: 71  KRSEAEEYAQSGFEKSNYVNSTLIN-PTVP-----------------VVEEKSNNFKAPR 112

Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
           SQ+L+  +KLI+ G+L  V+  VW NPRYL+ SGD P IL EGCRYNALH++ +A  P M
Sbjct: 113 SQDLICFKKLIKDGDLYAVKTTVWGNPRYLIGSGDTPAILQEGCRYNALHIAVRADRPDM 172

Query: 201 TEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC 260
            E++L  +GN  F  LLY  +  SY++R+ I+LDLY+NTPDK LNETPLHFA KFG    
Sbjct: 173 CELILNTVGNTDFIKLLYGDECKSYVDRAQIMLDLYLNTPDKGLNETPLHFAVKFGLKNV 232

Query: 261 VKRLIGCAKIQTSVRNKEGKTPLD 284
           V+ L+       ++ NK  + P+D
Sbjct: 233 VRILVSYPCCIRTLPNKYKQLPID 256

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414585|ref|XP_003490361.1| PREDICTED: ankyrin repeat and LEM domain-containing protein 2-like [Bombus impatiens]

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/264 (42%), Positives = 155/264 (58%), Gaps = 22/264 (8%)

Query: 25  VATKSEGTEEGIYFAVYIPSELL-GGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFR 83
           +   S  + E IY AVYIP E +    EN   E  RV+ +K EAL  IK+ K  R KSF+
Sbjct: 11  IHGNSNVSNEIIYHAVYIPEENIDSSIENSIKENIRVYQDKAEALKVIKEFKTGRLKSFK 70

Query: 84  NFQDAQNFAYHG---SCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLK 140
              +A+ +A  G   S  VN++L+ A     TV   +             EK + FK+ +
Sbjct: 71  KRSEAEEYAQTGFEKSNYVNSTLINA-----TVPVVE-------------EKSNNFKAPR 112

Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
           SQ+L+  +KLI+ G+L  V+  VW NPRYL+ SGD P IL EGCRYNALH++ +A  P M
Sbjct: 113 SQDLICFKKLIKDGDLYAVKTTVWGNPRYLIGSGDTPAILQEGCRYNALHIAVRADRPDM 172

Query: 201 TEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC 260
            E++L  +GN  F  LLY  +  SY++R+ I+LDLY+NTPDK LNETPLHFA KFG    
Sbjct: 173 CELILNTVGNTDFIKLLYGDECKSYVDRAQIMLDLYLNTPDKGLNETPLHFAVKFGLKNV 232

Query: 261 VKRLIGCAKIQTSVRNKEGKTPLD 284
           V+ L+       ++ NK  + P+D
Sbjct: 233 VRILVSYPCCIKTLPNKYKQLPID 256

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614607|gb|EHJ69171.1| hypothetical protein KGM_15711 [Danaus plexippus]

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/286 (39%), Positives = 160/286 (55%), Gaps = 30/286 (10%)

Query: 1   MSVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGIYFAVYIPSELLGGYENEFSECERV 60
           +S+  ++  +D+    +T  +PT++  ++       Y+ VYIP E+  G +    E   V
Sbjct: 479 ISLYRRLLRLDTFSKRNTLDSPTEIEPQA------TYYGVYIPCEIKKGPD---EETIHV 529

Query: 61  FDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSA 120
           + +K EAL   ++ K  RFK+FRN QDA +FA  G            A P      + ++
Sbjct: 530 YTDKLEALELFRRYKSARFKAFRNRQDAMSFALRG------------AEPIDNHEGNGNS 577

Query: 121 LPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL 180
           +         EKP PFK+   Q++V LRK IE G +  VR  +WDNPRYLVSSG  P I+
Sbjct: 578 I-------MGEKPYPFKAPSPQDMVTLRKAIEAGKVTVVRDRIWDNPRYLVSSGSTPAIV 630

Query: 181 HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY--DSDTPSYIERSDILLDLYVN 238
            EG RYNALH++ KA+N  +  ++L  +GNPAF   LY  ++D  S  E + ILLD Y+N
Sbjct: 631 QEGSRYNALHIAAKALNAEICNLILTTVGNPAFVQTLYGMETDYESCKEFATILLDRYLN 690

Query: 239 TPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
           TPDKA+NETPLHFAAKFG  E V  L    +     +NK G+   D
Sbjct: 691 TPDKAMNETPLHFAAKFGGDEVVDVLTSFPQCNKMAKNKYGEMAKD 736

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198922|gb|EFN79674.1| Ankyrin repeat and LEM domain-containing protein 2 [Harpegnathos saltator]

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 151/259 (58%), Gaps = 21/259 (8%)

Query: 27  TKSEGTEEGIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQ 86
           T S  T+E ++ AVYIP +       E    E ++ +  +AL  IK++KK R K+F+N  
Sbjct: 13  THSNLTKEAVFHAVYIPQDNKDSVNVE----EHIYQDLPDALEVIKEHKKARLKTFKNRS 68

Query: 87  DAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVK 146
           DA+ +A  G                 + +    +    +     E  S FK+ K QELV 
Sbjct: 69  DAEVYAKTGH----------------IQSYSSQSTSTTTVAPTQEICSNFKAPKPQELVT 112

Query: 147 LRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLE 206
            RKLIE GN+ +VR +VW NPRYL+S+GD P IL  G RYNA+H++ KA  P M E +L+
Sbjct: 113 FRKLIESGNIENVRSIVWANPRYLISNGDTPAILQLGSRYNAIHIAVKANKPDMCEFILK 172

Query: 207 IIGNPAFTNLLY-DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 265
            +GNP F  L Y D++  SY++   I+LDLY+NTPDK LNETPLHFA K+G  + V+ L+
Sbjct: 173 TVGNPTFIQLHYGDNECKSYLDPVQIILDLYLNTPDKGLNETPLHFAVKYGYKDIVRILV 232

Query: 266 GCAKIQTSVRNKEGKTPLD 284
             ++   ++RNK  + P+D
Sbjct: 233 SYSQCIKTLRNKYEQQPID 251

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194674594|ref|XP_591880.4| PREDICTED: ankyrin repeat and LEM domain-containing protein 2 [Bos taurus] gi|297484666|ref|XP_002694494.1| PREDICTED: ankyrin repeat and LEM domain-containing protein 2 [Bos taurus] gi|296478656|tpg|DAA20771.1| TPA: hypothetical protein BOS_16428 [Bos taurus]

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/244 (42%), Positives = 149/244 (61%), Gaps = 11/244 (4%)

Query: 50  YENEFSECER--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV-----NTS 102
           +E+  +  ER  V+++K+EAL  +K NK  RFK+F N +DA+ FA  GSC        TS
Sbjct: 213 FEDTPARNERIHVYEDKKEALQAVKMNKGSRFKAFTNREDAEKFA-RGSCDYFPSPSKTS 271

Query: 103 LLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQEL-VKLRKLIEKGNLADVRK 161
           L  +P   + + + D   L + S  A+ E+ + +K+ ++Q+L  KLRK +EKG+      
Sbjct: 272 LPLSPVKTAPLFSNDGLYLSE-SETASKERANSYKNPRTQDLTAKLRKAVEKGDEDTFSD 330

Query: 162 LVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD 221
           L+W NPRYL+ SGD PTI+ EGCRYN +HV+ K    A+ ++ LE + NP F  L+Y  D
Sbjct: 331 LIWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAKENQAAVCQLTLETLENPEFMRLMYPDD 390

Query: 222 TPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK 280
            P  +E R   ++DLY+NTPD+A  +TPLHFA KFG+V+ V  L     I  + RNK  K
Sbjct: 391 EPHMLEKRICYVVDLYLNTPDRAGYDTPLHFACKFGNVDVVNVLSSHPLIVKNPRNKYDK 450

Query: 281 TPLD 284
           TP D
Sbjct: 451 TPED 454

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157131979|ref|XP_001662390.1| hypothetical protein AaeL_AAEL012290 [Aedes aegypti] gi|108871330|gb|EAT35555.1| AAEL012290-PA [Aedes aegypti]

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/248 (45%), Positives = 147/248 (59%), Gaps = 21/248 (8%)

Query: 37  YFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGS 96
           Y+A+Y+P +     E E S  +  +++KEEAL  +K +K+ R K+FR  ++A  F  +G 
Sbjct: 3   YYAIYLPYK-----EPELS-VKSFYNDKEEALKVLKSHKEARLKAFRTSEEAVYFYLNG- 55

Query: 97  CGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNL 156
                     P+ P   TA  P +    +S    EK +PFK+ KSQELV  RK IEK  L
Sbjct: 56  ----------PSDPVPSTA--PKSPTSTTSKLKLEK-TPFKAPKSQELVAFRKNIEKNEL 102

Query: 157 ADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL 216
             VR +V  NPRYLVSSGD PTIL EG RYNALHV+    N  M  ++L+ I NP+F   
Sbjct: 103 DMVRNIVQLNPRYLVSSGDTPTILKEGPRYNALHVAAIEGNTDMCRLVLQTIENPSFIEF 162

Query: 217 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN 276
           L+    PS  E S ILLDLY+N PDK  +ETPLHFAAKFGSV  V+ LI   + + + +N
Sbjct: 163 LHGQRNPSTDEVSAILLDLYLNMPDKCRSETPLHFAAKFGSVGVVEVLISYPQCKMT-KN 221

Query: 277 KEGKTPLD 284
            +G  P D
Sbjct: 222 CDGHLPKD 229

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|187608335|ref|NP_001119867.1| ankyrin repeat and LEM domain-containing protein 2 [Danio rerio] gi|190339906|gb|AAI63479.1| Ankle2 protein [Danio rerio]

 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 146/244 (59%), Gaps = 11/244 (4%)

Query: 50  YENEFSECER--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA-----YHGSCGVNTS 102
           +E+  +  ER  V+ +K+EAL  +K  K  RFK+F N +DA+ FA     Y+ S   +T 
Sbjct: 135 WEDVLARNERAHVYTDKKEALQAVKMMKGARFKAFSNREDAEKFAKGICDYYPSPSKSTP 194

Query: 103 LLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQEL-VKLRKLIEKGNLADVRK 161
            + +P  P  V + D  ++ +  ++   EK + FKS ++Q+L  KLRK +EKG+     +
Sbjct: 195 CV-SPVKPGLVFSKDHPSMIEADTINR-EKANSFKSPRTQDLTAKLRKAVEKGDELGFTE 252

Query: 162 LVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD 221
           LVW NPRYL+ SGD PT++ EGCRYN +HV+ K   P + ++LL+ + NP F  L+Y  D
Sbjct: 253 LVWSNPRYLIGSGDNPTVVQEGCRYNVMHVAAKENQPGIVQILLDTLENPEFMRLMYPDD 312

Query: 222 TPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK 280
             S ++ R   ++DLY+NTPDKA  ETPLHFA KFG  E V  L     I  + +NK  +
Sbjct: 313 LESMLQKRIRYIVDLYLNTPDKAGFETPLHFACKFGCPEVVNILCSHPDIDKNCKNKYNQ 372

Query: 281 TPLD 284
            P +
Sbjct: 373 KPCE 376

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332024003|gb|EGI64221.1| Ankyrin repeat and LEM domain-containing protein 2 [Acromyrmex echinatior]

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/252 (39%), Positives = 139/252 (55%), Gaps = 21/252 (8%)

Query: 34  EGIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAY 93
           E +Y AVYIP E       E  E   V+   + AL  I   KK R KSF+N  DA  +A 
Sbjct: 42  ETLYHAVYIPLEYKDQSNGE--ETLHVYLEMQAALKVINTYKKGRLKSFKNRSDAVAYAR 99

Query: 94  HGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEK 153
            G+   ++S       P TVT                E+ S FK+  +Q+L+  + LIE 
Sbjct: 100 TGTNKQSSS-----NHPVTVTIT-------------QEQSSNFKAPSTQDLIAFKWLIES 141

Query: 154 GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF 213
           G++  V+ +VW+NPRYL+SSGD P +L  G RYNALH++ K   P M E LL  +G+P F
Sbjct: 142 GDVKAVKNIVWENPRYLISSGDTPALLQMGSRYNALHIAAKKGKPKMCEFLLNTVGDPKF 201

Query: 214 TNLLYDSDT-PSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQT 272
               Y  D   +Y+    I+ DLY+NTPDK LNETPLHFA KFG  + V+ L+  ++   
Sbjct: 202 MQRHYGEDKCKTYLNLEQIMQDLYLNTPDKGLNETPLHFAVKFGFKDVVRVLVSYSQCIK 261

Query: 273 SVRNKEGKTPLD 284
           +++NK  + P+D
Sbjct: 262 TLKNKYEQMPVD 273

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
UNIPROTKB|E1BFD1	967	ANKLE2 "Uncharacterized protei	0.637	0.241	0.421	2.5e-42
UNIPROTKB|F1NY55	979	ANKLE2 "Uncharacterized protei	0.637	0.239	0.395	9.7e-42
RGD|1310191	964	Ankle2 "ankyrin repeat and LEM	0.637	0.242	0.399	1.7e-39
MGI|MGI:1261856	964	Ankle2 "ankyrin repeat and LEM	0.757	0.288	0.367	5.8e-39
ZFIN|ZDB-GENE-091118-26	682	zdhhc8a "zinc finger, DHHC-typ	0.561	0.302	0.413	1.5e-38
UNIPROTKB|F5H2H5	876	ANKLE2 "Ankyrin repeat and LEM	0.634	0.265	0.395	3.2e-37
UNIPROTKB|Q86XL3	938	ANKLE2 "Ankyrin repeat and LEM	0.634	0.248	0.395	3.9e-37
UNIPROTKB|E2R7S4	959	ANKLE2 "Uncharacterized protei	0.667	0.255	0.386	1.1e-36
UNIPROTKB|F5H417	251	ANKLE2 "Ankyrin repeat and LEM	0.566	0.828	0.393	3.6e-34
FB|FBgn0028343	1174	l(1)G0222 "lethal (1) G0222" [	0.430	0.134	0.435	1.8e-33

UNIPROTKB|E1BFD1 ANKLE2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 447 (162.4 bits), Expect = 2.5e-42, Sum P(2) = 2.5e-42
 Identities = 104/247 (42%), Positives = 145/247 (58%)

Query:    50 YENEFSECER--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV--NTSLLE 105
             +E+  +  ER  V+++K+EAL  +K NK  RFK+F N +DA+ FA  GSC    + S   
Sbjct:   213 FEDTPARNERIHVYEDKKEALQAVKMNKGSRFKAFTNREDAEKFA-RGSCDYFPSPSKTS 271

Query:   106 APASP-STVTAADPSALPQ-----MSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLAD 158
              P SP  T        L        S  A+ E+ + +K+ ++Q+L  KLRK +EKG+   
Sbjct:   272 LPLSPVKTAPLFSNGGLKDGLYLSESETASKERANSYKNPRTQDLTAKLRKAVEKGDEDT 331

Query:   159 VRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY 218
                L+W NPRYL+ SGD PTI+ EGCRYN +HV+ K    A+ ++ LE + NP F  L+Y
Sbjct:   332 FSDLIWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAKENQAAVCQLTLETLENPEFMRLMY 391

Query:   219 DSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK 277
               D P  +E R   ++DLY+NTPD+A  +TPLHFA KFG+V+ V  L     I  + RNK
Sbjct:   392 PDDEPHMLEKRICYVVDLYLNTPDRAGYDTPLHFACKFGNVDVVNVLSSHPLIVKNPRNK 451

Query:   278 EGKTPLD 284
               KTP D
Sbjct:   452 YDKTPED 458

GO:0051721 "protein phosphatase 2A binding" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0007084 "mitotic nuclear envelope reassembly" evidence=IEA

UNIPROTKB|F1NY55 ANKLE2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 438 (159.2 bits), Expect = 9.7e-42, Sum P(2) = 9.7e-42
 Identities = 98/248 (39%), Positives = 148/248 (59%)

Query:    50 YENEFSECER--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV-----NTS 102
             Y++  +  ER  V+++++EAL  +K  K  RFK+F N +DA+ FA  G C        +S
Sbjct:   218 YDDILARNERIHVYEDRKEALQAVKMIKGSRFKAFSNREDAEKFA-KGICDYFPSPSKSS 276

Query:   103 LLEAPASPSTVTAADPSALPQMSSL----AAAEKPSPFKSLKSQELV-KLRKLIEKGNLA 157
             L  +P    ++  AD      + SL    A  E+ + +KS ++Q+L  KLRK +EKG+++
Sbjct:   277 LCLSPMKTGSLNRADAIYSDGLCSLEMETANKERANSYKSPRTQDLTAKLRKAVEKGDIS 336

Query:   158 DVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL 217
                +L+W NPRYL+ SGD PT++ EGCRYN +HV+ K   PA+ ++LL+ + NP F  L+
Sbjct:   337 TFSELIWSNPRYLIGSGDNPTVVQEGCRYNVMHVAAKENQPAVCQLLLDTLENPEFMRLM 396

Query:   218 Y-DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN 276
             Y D D      R   ++DLY+NTPDK   +TPLHFA KFG+++ V  L     I  + RN
Sbjct:   397 YPDDDNTMLRNRIRYIVDLYLNTPDKMGFDTPLHFACKFGNLDVVNVLTSHPAIVKNPRN 456

Query:   277 KEGKTPLD 284
             K  +TP +
Sbjct:   457 KYDQTPAE 464

GO:0007084 "mitotic nuclear envelope reassembly" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0051721 "protein phosphatase 2A binding" evidence=IEA

RGD|1310191 Ankle2 "ankyrin repeat and LEM domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 415 (151.1 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
 Identities = 99/248 (39%), Positives = 141/248 (56%)

Query:    50 YENEFSECER--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA-----YHGSCGVNTS 102
             YE+     ER  V+++K+EAL  +K  K  RFK+F   +DA+ FA     Y  S   N S
Sbjct:   214 YEDGLVRHERIHVYEDKKEALQAVKLIKGSRFKAFPTREDAEKFARGICDYLPSPSKNMS 273

Query:   103 LLEA----PASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLA 157
             LL      P   +    AD   L + S     E+ + +K+ ++Q+L  KLRK +E+G   
Sbjct:   274 LLSPVKAMPLCSNDGPKADGLCLAE-SETVNKERANSYKNPRTQDLTAKLRKAVERGEEH 332

Query:   158 DVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL 217
                 L+W NPRYL+ SGD PTI+ EGCRYN +HV+ K    ++ ++ LE + NP F  L+
Sbjct:   333 TFSDLIWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAKENQASVCQLTLETLENPEFMRLM 392

Query:   218 YDSDTPSYIERSDI-LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN 276
             Y  D    +++  + ++DLY+NTPDK   +TPLHFA KFG+V+ V  L     I  + RN
Sbjct:   393 YPDDNMDMLQKRILYIVDLYLNTPDKVGFDTPLHFACKFGNVDVVNVLSSHPLIVKNPRN 452

Query:   277 KEGKTPLD 284
             K GKTP D
Sbjct:   453 KYGKTPED 460

GO:0005737 "cytoplasm" evidence=ISO

GO:0007067 "mitosis" evidence=IEA

GO:0007084 "mitotic nuclear envelope reassembly" evidence=ISO;ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO;ISS

GO:0035307 "positive regulation of protein dephosphorylation" evidence=ISO;ISS

GO:0042326 "negative regulation of phosphorylation" evidence=ISO;ISS

GO:0051301 "cell division" evidence=IEA

GO:0051721 "protein phosphatase 2A binding" evidence=ISO;ISS

MGI|MGI:1261856 Ankle2 "ankyrin repeat and LEM domain containing 2" [Mus musculus (taxid:10090)]

 Score = 409 (149.0 bits), Expect = 5.8e-39, Sum P(2) = 5.8e-39
 Identities = 109/297 (36%), Positives = 157/297 (52%)

Query:     2 SVCFKMPSVDSMGPLSTKLTPTKVATKSEGTEEGIYFAVYIPSELLGG---YENEFSECE 58
             SV    P  +++   S    P   +T+++  + G+  A   P    G    YE+     E
Sbjct:   164 SVGLNPPEEEAVAS-SVHPVPFSASTRNDNHKAGVT-APKEPLVYYGVCPVYEDGPVRHE 221

Query:    59 R--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA-----YHGSCGVNTSLLE----AP 107
             R  V+++K+EAL   K  K  RFK+FR  +DA+ FA     Y  S    T LL      P
Sbjct:   222 RIHVYEDKKEALQAAKLIKGSRFKAFRTREDAEKFARGICDYLPSPNKTTPLLSPVKAVP 281

Query:   108 ASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDN 166
                S    AD   L + S     E+ + +K+ ++Q+L  KLRK +E G       L+W N
Sbjct:   282 LGGSDGLKADGLCLAE-SETVNKERANSYKNPRTQDLTAKLRKAVENGEEHTFSDLIWSN 340

Query:   167 PRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYI 226
             PRYL+ SGD PTI+ EGCRYN +HV+ K    +M ++ LE + NP F  L+Y  D    +
Sbjct:   341 PRYLIGSGDNPTIVQEGCRYNVMHVAAKENQASMCQLTLETLENPEFMRLMYPDDNMDML 400

Query:   227 ERSDI-LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 282
             ++  + ++DLY+NTPDK   +TPLHFA KFG+V+ V  L     I  + +NK GKTP
Sbjct:   401 QKRILYVVDLYLNTPDKVGFDTPLHFACKFGNVDVVNVLSSHPLIVKNRKNKYGKTP 457

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007084 "mitotic nuclear envelope reassembly" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

GO:0035307 "positive regulation of protein dephosphorylation" evidence=ISO

GO:0042326 "negative regulation of phosphorylation" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0051721 "protein phosphatase 2A binding" evidence=ISO

ZFIN|ZDB-GENE-091118-26 zdhhc8a "zinc finger, DHHC-type containing 8a" [Danio rerio (taxid:7955)]

 Score = 403 (146.9 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
 Identities = 93/225 (41%), Positives = 127/225 (56%)

Query:    60 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPS 119
             VF ++ + L  + K K  RFK+F +  +A+NFA  G CG   S    P  PST +  D  
Sbjct:   113 VFVDQTKVLKAVMKLKDARFKAFASRAEAENFA-KGLCGGRVS----PEKPSTASVTD-- 165

Query:   120 ALPQMSSLAAAEKPSPFKSLKSQELVK-LRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT 178
                        EK + F+S ++Q+L   LR+ +E G+    R+LVW NPR+L+ SGD PT
Sbjct:   166 ----------VEKANEFRSPRTQDLTATLRRTVETGDQQAFRELVWTNPRFLIGSGDNPT 215

Query:   179 ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYI-ERSDILLDLYV 237
             +L EGCRYN LHV+ K     M  +LLE + +P F  L+Y  D  + + +R   ++DLY+
Sbjct:   216 VLQEGCRYNVLHVAAKENQAGMARLLLETLEDPEFMKLMYPQDQENMLSQRIRYIVDLYL 275

Query:   238 NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 282
             NTPD+A NETPLHFA KFG  E V  L     I    RNK  + P
Sbjct:   276 NTPDRASNETPLHFACKFGCPEVVNVLCSHPFIDKHCRNKYDQQP 320

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F5H2H5 ANKLE2 "Ankyrin repeat and LEM domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 409 (149.0 bits), Expect = 3.2e-37, P = 3.2e-37
 Identities = 98/248 (39%), Positives = 140/248 (56%)

Query:    50 YENEFSECER--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV--NTSLLE 105
             YE+  +  ER  V++NK+EAL  +K  K  RFK+F   +DA+ FA  G C    + S   
Sbjct:   144 YEDVPARNERIYVYENKKEALQAVKMIKGSRFKAFSTREDAEKFA-RGICDYFPSPSKTS 202

Query:   106 APASP-------STVTAADPSALPQMSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLA 157
              P SP       S     D   L + S     E+ + +K+ ++Q+L  KLRK +EKG   
Sbjct:   203 LPLSPVKTAPLFSNDRLKDGLCLSE-SETVNKERANSYKNPRTQDLTAKLRKAVEKGEED 261

Query:   158 DVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL 217
                 L+W NPRYL+ SGD PTI+ EGCRYN +HV+ K    ++ ++ L+++ NP F  L+
Sbjct:   262 TFSDLIWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAKENQASICQLTLDVLENPDFMRLM 321

Query:   218 YDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN 276
             Y  D  + ++ R   ++DLY+NTPDK   +TPLHFA KFG+ + V  L     I  + RN
Sbjct:   322 YPDDDEAMLQKRIRYVVDLYLNTPDKMGYDTPLHFACKFGNADVVNVLSSHHLIVKNSRN 381

Query:   277 KEGKTPLD 284
             K  KTP D
Sbjct:   382 KYDKTPED 389

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q86XL3 ANKLE2 "Ankyrin repeat and LEM domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 409 (149.0 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 98/248 (39%), Positives = 140/248 (56%)

Query:    50 YENEFSECER--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGV--NTSLLE 105
             YE+  +  ER  V++NK+EAL  +K  K  RFK+F   +DA+ FA  G C    + S   
Sbjct:   206 YEDVPARNERIYVYENKKEALQAVKMIKGSRFKAFSTREDAEKFA-RGICDYFPSPSKTS 264

Query:   106 APASP-------STVTAADPSALPQMSSLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLA 157
              P SP       S     D   L + S     E+ + +K+ ++Q+L  KLRK +EKG   
Sbjct:   265 LPLSPVKTAPLFSNDRLKDGLCLSE-SETVNKERANSYKNPRTQDLTAKLRKAVEKGEED 323

Query:   158 DVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL 217
                 L+W NPRYL+ SGD PTI+ EGCRYN +HV+ K    ++ ++ L+++ NP F  L+
Sbjct:   324 TFSDLIWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAKENQASICQLTLDVLENPDFMRLM 383

Query:   218 YDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN 276
             Y  D  + ++ R   ++DLY+NTPDK   +TPLHFA KFG+ + V  L     I  + RN
Sbjct:   384 YPDDDEAMLQKRIRYVVDLYLNTPDKMGYDTPLHFACKFGNADVVNVLSSHHLIVKNSRN 443

Query:   277 KEGKTPLD 284
             K  KTP D
Sbjct:   444 KYDKTPED 451

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007084 "mitotic nuclear envelope reassembly" evidence=IMP

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0042326 "negative regulation of phosphorylation" evidence=IDA

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IDA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0050790 "regulation of catalytic activity" evidence=TAS

GO:0051721 "protein phosphatase 2A binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E2R7S4 ANKLE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 405 (147.6 bits), Expect = 1.1e-36, P = 1.1e-36
 Identities = 102/264 (38%), Positives = 149/264 (56%)

Query:    33 EEGIYFAVYIPSELLGGYENEFSECER--VFDNKEEALLFIKKNKKIRFKSFRNFQDAQN 90
             E+ +Y+ V  P+     YE+  +  ER  V++++++AL  +K  K  RFK+F   +DA+ 
Sbjct:   200 EQPLYYGV-CPA-----YEDIPARNERIHVYEDRKDALQAVKMIKGSRFKAFSTREDAEK 253

Query:    91 FAYHGSCGVNTSLLEA--PASPSTVTAADPSA-LPQMSSLAAAE-----KPSPFKSLKSQ 142
             FA  G C    S  +A  P SP  V     S  L     L+ +E     + + +K+ ++Q
Sbjct:   254 FA-RGICDYFPSPSKASLPLSPVKVAPLFSSGGLKDGLYLSESETVNRERANSYKTPRTQ 312

Query:   143 ELV-KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT 201
             +L  KLRK +EKG       L W NPRYL+ SGD PTI+ EGCRYN +HV+ K    ++ 
Sbjct:   313 DLTAKLRKAVEKGEDDTFSNLTWSNPRYLIGSGDNPTIVQEGCRYNVMHVAAKENQASIC 372

Query:   202 EMLLEIIGNPAFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKALNETPLHFAAKFGSVEC 260
             ++ LE + NP F  L+Y  D P+ ++ R   ++DLY+NTPDK   +TPLHFA KFG+ + 
Sbjct:   373 QLTLETLENPEFMRLMYPDDDPNMLQQRICYIVDLYLNTPDKVGYDTPLHFACKFGNADV 432

Query:   261 VKRLIGCAKIQTSVRNKEGKTPLD 284
             V  L     I  + RNK  KTP D
Sbjct:   433 VNVLSSHPLIVKNPRNKYDKTPED 456

GO:0051721 "protein phosphatase 2A binding" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0035307 "positive regulation of protein dephosphorylation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0007084 "mitotic nuclear envelope reassembly" evidence=IEA

UNIPROTKB|F5H417 ANKLE2 "Ankyrin repeat and LEM domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 87/221 (39%), Positives = 123/221 (55%)

Query:    75 KKIRFKSFRNFQDAQNFAYHGSCGV--NTSLLEAPASP-------STVTAADPSALPQMS 125
             K  RFK+F   +DA+ FA  G C    + S    P SP       S     D   L + S
Sbjct:     3 KGSRFKAFSTREDAEKFA-RGICDYFPSPSKTSLPLSPVKTAPLFSNDRLKDGLCLSE-S 60

Query:   126 SLAAAEKPSPFKSLKSQELV-KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGC 184
                  E+ + +K+ ++Q+L  KLRK +EKG       L+W NPRYL+ SGD PTI+ EGC
Sbjct:    61 ETVNKERANSYKNPRTQDLTAKLRKAVEKGEEDTFSDLIWSNPRYLIGSGDNPTIVQEGC 120

Query:   185 RYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIE-RSDILLDLYVNTPDKA 243
             RYN +HV+ K    ++ ++ L+++ NP F  L+Y  D  + ++ R   ++DLY+NTPDK 
Sbjct:   121 RYNVMHVAAKENQASICQLTLDVLENPDFMRLMYPDDDEAMLQKRIRYVVDLYLNTPDKM 180

Query:   244 LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
               +TPLHFA KFG+ + V  L     I  + RNK  KTP D
Sbjct:   181 GYDTPLHFACKFGNADVVNVLSSHHLIVKNSRNKYDKTPED 221

GO:0005737 "cytoplasm" evidence=IDA

FB|FBgn0028343 l(1)G0222 "lethal (1) G0222" [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
 Identities = 71/163 (43%), Positives = 101/163 (61%)

Query:   122 PQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILH 181
             PQ   ++  E P PF++   QELV+ RK IE G++  V++++W+NPR+L+SSGD PT L 
Sbjct:   216 PQQPDVSG-EGP-PFRAPTKQELVEFRKQIEGGHIDRVKRIIWENPRFLISSGDTPTSLK 273

Query:   182 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD-TPSYIERSDI-LLDLYVNT 239
             EGCRYNA+H+  +     + ++LL+ I +  FT L      +       +I LLD Y+N 
Sbjct:   274 EGCRYNAMHICAQVNKARIAQLLLKTISDREFTQLYVGKKGSGKMCAALNISLLDYYLNM 333

Query:   240 PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 282
             PDK   ETPLHFAAK G V  V+ L+   + + S+RN EGK P
Sbjct:   334 PDKGRGETPLHFAAKNGHVAMVEVLVSYPECK-SLRNHEGKEP 375

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	367
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 13/108 (12%)

Query: 186 YNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--Y 236
              LH++    +  + ++LLE   +    +   D  TP        ++E   +LL+    
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVNAKD--NDGRTPLHLAAKNGHLEIVKLLLEKGAD 65

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
           VN  DK    TPLH AA+ G+++ VK L+       + R+K+G+TPL 
Sbjct: 66  VNARDK-DGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPLH 111

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
           +N  D   N TPLH AAK+G++E V+ L+    +  ++R+ +G T LD
Sbjct: 9   LNATDGNGN-TPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)

Query: 151 IEKGNLADVRKLVWDNPRYLVSSGDFPTIL-HEGCRYNALHVSTKAVNPAMTEMLLEIIG 209
              G+L  V+         L+ +G       ++G     LH++ K  +  + ++LLE   
Sbjct: 15  ASNGHLEVVK--------LLLENGADVNAKDNDG--RTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 210 NPAFTNLLYDSDTP-------SYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVEC 260
           +    +   D +TP         ++   +LL     VN  DK    TPLH AAK G +E 
Sbjct: 65  DVNARD--KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD-GRTPLHLAAKNGHLEV 121

Query: 261 VKRLI 265
           VK L+
Sbjct: 122 VKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 245 NETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
            +T LH AA+ G++E VK L+   A +    ++K+G T L
Sbjct: 28  TDTALHLAARNGNLEIVKLLLEHGADVNA--KDKDGNTAL 65

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 36/104 (34%)

Query: 171 VSSGDFPTI---LHEGCRYN------ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD 221
             +G+   +   L +G   N      ALH++ +  N  + ++LLE           + +D
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLE-----------HGAD 53

Query: 222 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 265
                          VN  DK    T LH AA+ G++E VK L+
Sbjct: 54  ---------------VNAKDK-DGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
           T LH AA  G +E VK L+    +  +  +++G T L 
Sbjct: 3   TALHKAAISGRLELVKYLL-EKGVDINRTDEDGNTALH 39

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 246 ETPLHFAAKFGSVECVKRLI 265
            TPLH AA+ G +E VK L+
Sbjct: 3   NTPLHLAARNGHLEVVKLLL 22

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI 265
           +N  D+    T LH AA+ G++E +K L+
Sbjct: 27  INRTDED-GNTALHIAAENGNLEVLKLLL 54

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
KOG4412|consensus	226		99.92
PHA02791	284	ankyrin-like protein; Provisional	99.89
KOG4412|consensus	226		99.88
KOG0509|consensus	600		99.87
PHA02874	434	ankyrin repeat protein; Provisional	99.85
PHA02875	413	ankyrin repeat protein; Provisional	99.85
PHA02878	477	ankyrin repeat protein; Provisional	99.84
PHA03100	480	ankyrin repeat protein; Provisional	99.84
PHA02875	413	ankyrin repeat protein; Provisional	99.84
KOG0509|consensus	600		99.84
PHA02874	434	ankyrin repeat protein; Provisional	99.82
PHA02795	437	ankyrin-like protein; Provisional	99.82
PHA02791	284	ankyrin-like protein; Provisional	99.82
PHA02859	209	ankyrin repeat protein; Provisional	99.82
PHA02946	446	ankyin-like protein; Provisional	99.81
PHA03100	480	ankyrin repeat protein; Provisional	99.81
PHA02989	494	ankyrin repeat protein; Provisional	99.8
PHA02878	477	ankyrin repeat protein; Provisional	99.8
PHA02798	489	ankyrin-like protein; Provisional	99.8
KOG0512|consensus	228		99.79
PHA03095	471	ankyrin-like protein; Provisional	99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.79
PHA02741	169	hypothetical protein; Provisional	99.78
PHA02859	209	ankyrin repeat protein; Provisional	99.78
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.77
PHA02876	682	ankyrin repeat protein; Provisional	99.76
PHA02884	300	ankyrin repeat protein; Provisional	99.76
PHA02946	446	ankyin-like protein; Provisional	99.76
KOG0502|consensus	296		99.76
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.76
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.75
KOG0510|consensus	929		99.74
KOG0510|consensus	929		99.74
PHA03095	471	ankyrin-like protein; Provisional	99.74
KOG0508|consensus	615		99.74
PHA02736	154	Viral ankyrin protein; Provisional	99.73
PHA02876	682	ankyrin repeat protein; Provisional	99.73
PHA02917	661	ankyrin-like protein; Provisional	99.73
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.73
KOG0508|consensus	615		99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
KOG0505|consensus	527		99.71
PHA02798	489	ankyrin-like protein; Provisional	99.71
PHA02989	494	ankyrin repeat protein; Provisional	99.7
KOG0514|consensus	452		99.69
PHA02795	437	ankyrin-like protein; Provisional	99.68
PHA02917	661	ankyrin-like protein; Provisional	99.68
KOG0512|consensus	228		99.68
KOG0195|consensus	448		99.66
KOG0514|consensus	452		99.66
KOG4177|consensus	1143		99.65
KOG4177|consensus	1143		99.65
PHA02730	672	ankyrin-like protein; Provisional	99.65
KOG0195|consensus	448		99.62
PHA02743	166	Viral ankyrin protein; Provisional	99.61
PHA02730	672	ankyrin-like protein; Provisional	99.6
KOG4214|consensus	117		99.58
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.58
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.58
KOG0507|consensus	854		99.57
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.54
KOG0505|consensus	527		99.54
KOG0502|consensus	296		99.53
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.51
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.5
KOG0507|consensus	854		99.5
PHA02736	154	Viral ankyrin protein; Provisional	99.5
PHA02792	631	ankyrin-like protein; Provisional	99.49
PHA02884	300	ankyrin repeat protein; Provisional	99.47
PHA02741	169	hypothetical protein; Provisional	99.46
KOG1710|consensus	396		99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
PHA02792	631	ankyrin-like protein; Provisional	99.44
KOG3676|consensus	782		99.43
KOG0515|consensus	752		99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.36
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.27
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.24
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.22
KOG4214|consensus	117		99.16
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.15
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.09
KOG0783|consensus	1267		99.04
KOG4369|consensus	2131		99.01
KOG0515|consensus	752		98.98
KOG3676|consensus	782		98.98
KOG1710|consensus	396		98.97
KOG4369|consensus	2131		98.95
PF13606	30	Ank_3: Ankyrin repeat	98.88
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.88
KOG0818|consensus	669		98.74
KOG0782|consensus	1004		98.7
KOG0818|consensus	669		98.63
KOG0506|consensus	622		98.51
PF13606	30	Ank_3: Ankyrin repeat	98.49
KOG0705|consensus	749		98.46
KOG0506|consensus	622		98.41
PF01693	44	Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR0	98.4
KOG3609|consensus	822		98.39
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.32
KOG0522|consensus	560		98.29
KOG0522|consensus	560		98.1
KOG0705|consensus	749		98.01
KOG0783|consensus	1267		97.96
KOG0521|consensus	785		97.9
KOG0520|consensus	975		97.9
KOG0511|consensus	516		97.84
KOG0782|consensus	1004		97.84
KOG0511|consensus	516		97.75
KOG2384|consensus	223		97.65
COG3341	225	Predicted double-stranded RNA/RNA-DNA hybrid bindi	97.59
KOG2384|consensus	223		97.52
KOG2505|consensus	591		97.32
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.22
KOG0521|consensus	785		97.2
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.53
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.45
KOG3752|consensus	371		96.37
KOG0520|consensus	975		96.01
KOG3609|consensus	822		94.89
KOG2505|consensus	591		90.41
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	82.18

>KOG4412|consensus

Probab=99.92  E-value=3.1e-25  Score=187.66  Aligned_cols=144  Identities=21%  Similarity=0.222  Sum_probs=126.2

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhh-cCC-----CCCc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI-IGN-----PAFT  214 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~-~~d-----~~~~  214 (367)
                      ++..|+|||||..|+.+++        .||++.-..+.+.+|..||||||+||..|+.++|+.|+.+ ++|     .+..
T Consensus        36 qD~Rt~LHwa~S~g~~eiv--------~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~  107 (226)
T KOG4412|consen   36 QDGRTPLHWACSFGHVEIV--------YFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQ  107 (226)
T ss_pred             ccCCceeeeeeecCchhHH--------HHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCc
Confidence            4567899999999999999        8888543333366788999999999999999999999999 665     4567


Q ss_pred             ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222         215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL  292 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~  292 (367)
                      ..+|.++..+.++++++|++.|++++  |+ .|.||||-||.-|..+++++|+..| +.+|.+|++|+||||.|...|+.
T Consensus       108 T~LHyAagK~r~eIaqlLle~ga~i~~kD~-~~qtplHRAAavGklkvie~Li~~~-a~~n~qDk~G~TpL~~al~e~~~  185 (226)
T KOG4412|consen  108 TCLHYAAGKGRLEIAQLLLEKGALIRIKDK-QGQTPLHRAAAVGKLKVIEYLISQG-APLNTQDKYGFTPLHHALAEGHP  185 (226)
T ss_pred             ceehhhhcCChhhHHHHHHhcCCCCccccc-ccCchhHHHHhccchhhHHHHHhcC-CCCCcccccCccHHHHHHhccCc
Confidence            77888999999999999999996655  77 9999999999999999999999999 99999999999999999766666


Q ss_pred             HH
Q psy4222         293 EN  294 (367)
Q Consensus       293 ~~  294 (367)
                      +.
T Consensus       186 d~  187 (226)
T KOG4412|consen  186 DV  187 (226)
T ss_pred             hH
Confidence            54

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=2e-22  Score=189.39  Aligned_cols=143  Identities=16%  Similarity=0.081  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC------Cccc
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA------FTNL  216 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~------~~~~  216 (367)
                      +.||||.|+..|+.+++        ++|+..|+++ +.+|..|+||||+|+..|+.+++++|++.+++.+      ...+
T Consensus        61 ~~TpLh~Aa~~g~~eiV--------~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~Tp  131 (284)
T PHA02791         61 NEFPLHQAATLEDTKIV--------KILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS  131 (284)
T ss_pred             CCCHHHHHHHCCCHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHH
Confidence            35899999999999999        9999999888 6789999999999999999999999999998642      2356


Q ss_pred             ccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChH-HHHHhcCCcHHHH
Q psy4222         217 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP-LDSSSGLDLLENY  295 (367)
Q Consensus       217 ~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TP-L~iA~~~g~~~~l  295 (367)
                      ++.++..++.+++++|++.+.+..+...|.||||+|+..|+.++|++||++| ++++.+|..|.|| ||+|+..|+.+.+
T Consensus       132 L~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~g-Ad~n~~d~~g~t~~L~~Aa~~~~~e~v  210 (284)
T PHA02791        132 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDLEML  210 (284)
T ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCC-CCCCcccCCCCChHHHHHHHcCCHHHH
Confidence            7778888999999999998866655436899999999999999999999999 9999999999987 9999999998753

>KOG4412|consensus

Probab=99.88  E-value=1.6e-22  Score=171.29  Aligned_cols=153  Identities=20%  Similarity=0.155  Sum_probs=131.8

Q ss_pred             hhhhhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhc-CCCccccCCCCCCcHHHHHHHcCCHHHHH
Q psy4222         124 MSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKAVNPAMTE  202 (367)
Q Consensus       124 ~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~-g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~  202 (367)
                      |..++......+....+..++||||.||..|+.+.|        +-|+.. |+++ +..+..|.|+|||||..|+.+|++
T Consensus        53 iv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evV--------k~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaq  123 (226)
T KOG4412|consen   53 IVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVV--------KELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQ  123 (226)
T ss_pred             HHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHH--------HHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHH
Confidence            444454455555666678889999999999999999        666666 8888 577888999999999999999999


Q ss_pred             HHHhhcCCCC-----CcccccccCCCChHHHHHHHHhcC--CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q psy4222         203 MLLEIIGNPA-----FTNLLYDSDTPSYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVR  275 (367)
Q Consensus       203 ~LL~~~~d~~-----~~~~~~~~~~~~~~~~v~~Ll~~~--~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~  275 (367)
                      +|++.|+.+.     ...++|.++..|.++++++|+..+  +|.+|+ .|+||||+|..-|+.++..+|+++| |+.+..
T Consensus       124 lLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk-~G~TpL~~al~e~~~d~a~lLV~~g-Ad~~~e  201 (226)
T KOG4412|consen  124 LLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK-YGFTPLHHALAEGHPDVAVLLVRAG-ADTDRE  201 (226)
T ss_pred             HHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccc-cCccHHHHHHhccCchHHHHHHHhc-cceeec
Confidence            9999998644     455678888899999999999988  666788 9999999998889999999999999 999999


Q ss_pred             CCCCChHHHHHhc
Q psy4222         276 NKEGKTPLDSSSG  288 (367)
Q Consensus       276 n~~G~TPL~iA~~  288 (367)
                      |+.| ||+.+|+.
T Consensus       202 dke~-t~~~~a~~  213 (226)
T KOG4412|consen  202 DKEG-TALRIACN  213 (226)
T ss_pred             cccC-chHHHHHH
Confidence            9999 99999874

>KOG0509|consensus

Probab=99.87  E-value=2.3e-22  Score=198.60  Aligned_cols=153  Identities=20%  Similarity=0.165  Sum_probs=132.1

Q ss_pred             CCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC
Q psy4222         133 PSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA  212 (367)
Q Consensus       133 ~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~  212 (367)
                      ....+.|+.++.+.||||+.+++++.+        +||+++|++++..--.-+.|||||||++|+..+|++|+++|+|+.
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~--------r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt  139 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVA--------RYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPT  139 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHH--------HHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCc
Confidence            344555777889999999999999999        999999999943333558999999999999999999999999754


Q ss_pred             -----CcccccccCCCChHHHHHHHHhcC--CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCChHHH
Q psy4222         213 -----FTNLLYDSDTPSYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN-KEGKTPLD  284 (367)
Q Consensus       213 -----~~~~~~~~~~~~~~~~v~~Ll~~~--~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n-~~G~TPL~  284 (367)
                           ...++|-++..++...+-+|+..+  +|.+|. +|+|||||||..|+...++.||..| +.+..+| ++|.||||
T Consensus       140 ~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~-~grTpLmwAaykg~~~~v~~LL~f~-a~~~~~d~~~g~TpLH  217 (600)
T KOG0509|consen  140 LKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN-NGRTPLMWAAYKGFALFVRRLLKFG-ASLLLTDDNHGNTPLH  217 (600)
T ss_pred             eecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC-CCCCHHHHHHHhcccHHHHHHHHhc-ccccccccccCCchHH
Confidence                 456678888899999999999887  455577 9999999999999998899999999 8999888 89999999


Q ss_pred             HHhcCCcHHHH
Q psy4222         285 SSSGLDLLENY  295 (367)
Q Consensus       285 iA~~~g~~~~l  295 (367)
                      +|+..|+...+
T Consensus       218 wa~~~gN~~~v  228 (600)
T KOG0509|consen  218 WAVVGGNLTAV  228 (600)
T ss_pred             HHHhcCCcceE
Confidence            99999887753

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.9e-20  Score=186.96  Aligned_cols=172  Identities=19%  Similarity=0.223  Sum_probs=110.3

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc----------------------ccCCCCCCcHHHHHHHcC
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT----------------------ILHEGCRYNALHVSTKAV  196 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~----------------------~~~d~~G~TpLh~Aa~~g  196 (367)
                      .+..+.++||.|+..|+.+.+        ++|++.|+++.                      +.++..|.||||+|+..|
T Consensus        64 ~~~~~~t~L~~A~~~~~~~iv--------~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~  135 (434)
T PHA02874         64 INTKIPHPLLTAIKIGAHDII--------KLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKG  135 (434)
T ss_pred             CCCCCCCHHHHHHHcCCHHHH--------HHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCC
Confidence            344455677777777777777        67776664431                      234566777777777777


Q ss_pred             CHHHHHHHHhhcCCC-----CCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy4222         197 NPAMTEMLLEIIGNP-----AFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAK  269 (367)
Q Consensus       197 ~~~iv~~LL~~~~d~-----~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~  269 (367)
                      +.+++++|++.|++.     ....+++.++..++.+++++|++.|++..  +. .|+||||+|+..|+.++|++|+++| 
T Consensus       136 ~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~-~g~tpL~~A~~~g~~~iv~~Ll~~g-  213 (434)
T PHA02874        136 DLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN-NGESPLHNAAEYGDYACIKLLIDHG-  213 (434)
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCC-
Confidence            777777777777653     23445555666677777777777765443  44 6777777777777777777777777 


Q ss_pred             CCCCCCCCCCChHHHHHhcCCcHHHHHhhhchHHHHhccCCCCCCCCCCCCccccchHHHhccC
Q psy4222         270 IQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVN  333 (367)
Q Consensus       270 ad~~~~n~~G~TPL~iA~~~g~~~~ll~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~l~~~~~~  333 (367)
                      ++++.++..|.||||+|+..+....       ..+..      +..++....+..+|++..+..
T Consensus       214 ~~i~~~~~~g~TpL~~A~~~~~~~i-------~~Ll~------~~~in~~d~~G~TpLh~A~~~  264 (434)
T PHA02874        214 NHIMNKCKNGFTPLHNAIIHNRSAI-------ELLIN------NASINDQDIDGSTPLHHAINP  264 (434)
T ss_pred             CCCcCCCCCCCCHHHHHHHCChHHH-------HHHHc------CCCCCCcCCCCCCHHHHHHhc
Confidence            6777777777777777776553211       11111      122344555677888877653

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.85  E-value=3.9e-20  Score=183.36  Aligned_cols=198  Identities=17%  Similarity=0.126  Sum_probs=150.4

Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCcchhhhhhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHH
Q psy4222          82 FRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRK  161 (367)
Q Consensus        82 F~~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~  161 (367)
                      +++.+-++.+.+.|.++....  ..+.+|.-.+.. .+..+-+..++..+.....+.  ....++||.|+..|+.+.|  
T Consensus        12 ~g~~~iv~~Ll~~g~~~n~~~--~~g~tpL~~A~~-~~~~~~v~~Ll~~ga~~~~~~--~~~~t~L~~A~~~g~~~~v--   84 (413)
T PHA02875         12 FGELDIARRLLDIGINPNFEI--YDGISPIKLAMK-FRDSEAIKLLMKHGAIPDVKY--PDIESELHDAVEEGDVKAV--   84 (413)
T ss_pred             hCCHHHHHHHHHCCCCCCccC--CCCCCHHHHHHH-cCCHHHHHHHHhCCCCccccC--CCcccHHHHHHHCCCHHHH--
Confidence            356677888888888776542  233333322221 222333333444444333332  3446899999999999999  


Q ss_pred             HHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----CcccccccCCCChHHHHHHHHhcC
Q psy4222         162 LVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLYDSDTPSYIERSDILLDLY  236 (367)
Q Consensus       162 ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~~~~~~~~~~~v~~Ll~~~  236 (367)
                            ++|++.|.......+..|+||||+|+..|+.+++++|++.|+++.     ...+++.++..++.+++++|++.|
T Consensus        85 ------~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g  158 (413)
T PHA02875         85 ------EELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK  158 (413)
T ss_pred             ------HHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence                  888888876655667789999999999999999999999998753     455677778889999999999998


Q ss_pred             CCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-hHHHHHhcCCcHHH
Q psy4222         237 VNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK-TPLDSSSGLDLLEN  294 (367)
Q Consensus       237 ~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~-TPL~iA~~~g~~~~  294 (367)
                      ++..  |. .|+||||+|+..|+.+++++|+++| ++++..+..|. ||+|+|+..++.+.
T Consensus       159 ~~~~~~d~-~g~TpL~~A~~~g~~eiv~~Ll~~g-a~~n~~~~~~~~t~l~~A~~~~~~~i  217 (413)
T PHA02875        159 ACLDIEDC-CGCTPLIIAMAKGDIAICKMLLDSG-ANIDYFGKNGCVAALCYAIENNKIDI  217 (413)
T ss_pred             CCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCCCchHHHHHHHcCCHHH
Confidence            7655  56 8999999999999999999999999 99999998875 88999999888763

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.7e-20  Score=189.40  Aligned_cols=141  Identities=18%  Similarity=0.213  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCc---ccccc
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT---NLLYD  219 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~---~~~~~  219 (367)
                      ..+|||.||+.|+.+.|        ++|++.|+++ +.+|..|+||||+||..|+.+++++|++.+.+....   ..++.
T Consensus        37 ~~tPLh~A~~~g~~e~v--------k~Ll~~gadv-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~  107 (477)
T PHA02878         37 PFIPLHQAVEARNLDVV--------KSLLTRGHNV-NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKD  107 (477)
T ss_pred             CcchHHHHHHcCCHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHH
Confidence            45899999999999999        9999999988 688999999999999999988888888765432110   00000


Q ss_pred             c-------------------------------CCC--ChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHH
Q psy4222         220 S-------------------------------DTP--SYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRL  264 (367)
Q Consensus       220 ~-------------------------------~~~--~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~L  264 (367)
                      +                               ...  ...+++++|++.|+++.  +...|+||||+||..|+.++|++|
T Consensus       108 a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        108 AFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             HHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHH
Confidence            0                               001  12347777777776655  331277777777777777777777


Q ss_pred             HhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         265 IGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       265 L~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      +++| ++++.+|..|.||||+|+..++.+
T Consensus       188 l~~g-ad~n~~d~~g~tpLh~A~~~~~~~  215 (477)
T PHA02878        188 LSYG-ANVNIPDKTNNSPLHHAVKHYNKP  215 (477)
T ss_pred             HHCC-CCCCCcCCCCCCHHHHHHHhCCHH
Confidence            7777 777777777777777777776655

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.84  E-value=3.9e-20  Score=186.65  Aligned_cols=196  Identities=19%  Similarity=0.132  Sum_probs=151.2

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC-CCCCcchhhhhhcccCCCCCCCCChhhHHHHHHHHHcC--CHHHH
Q psy4222          83 RNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAA-DPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKG--NLADV  159 (367)
Q Consensus        83 ~~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G--~~~~v  159 (367)
                      .+.+-++.+.+.|.++...  ...+.+|.-.+.. ..+..+-+..++..+.  +....+..+.|+||.|+..|  +.+.+
T Consensus        84 ~~~~iv~~Ll~~ga~i~~~--d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~~iv  159 (480)
T PHA03100         84 DVKEIVKLLLEYGANVNAP--DNNGITPLLYAISKKSNSYSIVEYLLDNGA--NVNIKNSDGENLLHLYLESNKIDLKIL  159 (480)
T ss_pred             chHHHHHHHHHCCCCCCCC--CCCCCchhhHHHhcccChHHHHHHHHHcCC--CCCccCCCCCcHHHHHHHcCCChHHHH
Confidence            4555677777777765332  1233333322321 2223333344444433  34445567789999999999  99999


Q ss_pred             HHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----------cccccccCCCCh--H
Q psy4222         160 RKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-----------TNLLYDSDTPSY--I  226 (367)
Q Consensus       160 ~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-----------~~~~~~~~~~~~--~  226 (367)
                              ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.|++...           ..+++.++..++  .
T Consensus       160 --------~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  230 (480)
T PHA03100        160 --------KLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITL  230 (480)
T ss_pred             --------HHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcH
Confidence                    9999999988 57788999999999999999999999999987542           345566666777  9


Q ss_pred             HHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         227 ERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       227 ~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      +++++|++.|+++.  |. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.+
T Consensus       231 ~iv~~Ll~~g~din~~d~-~g~TpL~~A~~~~~~~iv~~Ll~~g-ad~n~~d~~g~tpl~~A~~~~~~~  297 (480)
T PHA03100        231 EVVNYLLSYGVPINIKDV-YGFTPLHYAVYNNNPEFVKYLLDLG-ANPNLVNKYGDTPLHIAILNNNKE  297 (480)
T ss_pred             HHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHhCCHH
Confidence            99999999987655  66 8999999999999999999999999 899999999999999999887765

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.84  E-value=2.8e-20  Score=184.40  Aligned_cols=156  Identities=15%  Similarity=0.132  Sum_probs=132.9

Q ss_pred             hhhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy4222         126 SLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLL  205 (367)
Q Consensus       126 ~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL  205 (367)
                      .++..+....++  ...+.||||.|+..|+.+.+        ++|++.|+++ +..+..+.||||+|+..|+.+++++|+
T Consensus        20 ~Ll~~g~~~n~~--~~~g~tpL~~A~~~~~~~~v--------~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll   88 (413)
T PHA02875         20 RLLDIGINPNFE--IYDGISPIKLAMKFRDSEAI--------KLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEELL   88 (413)
T ss_pred             HHHHCCCCCCcc--CCCCCCHHHHHHHcCCHHHH--------HHHHhCCCCc-cccCCCcccHHHHHHHCCCHHHHHHHH
Confidence            344444433333  34567999999999999999        9999999888 566778999999999999999999999


Q ss_pred             hhcCC------CCCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q psy4222         206 EIIGN------PAFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK  277 (367)
Q Consensus       206 ~~~~d------~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~  277 (367)
                      +.+++      .....+++.++..++.+++++|++.|+++.  +. .|.||||+|+..|+.++|++|+++| ++++.+|.
T Consensus        89 ~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~-~g~tpLh~A~~~~~~~~v~~Ll~~g-~~~~~~d~  166 (413)
T PHA02875         89 DLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNT-DKFSPLHLAVMMGDIKGIELLIDHK-ACLDIEDC  166 (413)
T ss_pred             HcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCCCC
Confidence            98864      234567777888899999999999997765  55 8999999999999999999999999 99999999


Q ss_pred             CCChHHHHHhcCCcHHH
Q psy4222         278 EGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       278 ~G~TPL~iA~~~g~~~~  294 (367)
                      .|.||||+|+..|+.+.
T Consensus       167 ~g~TpL~~A~~~g~~ei  183 (413)
T PHA02875        167 CGCTPLIIAMAKGDIAI  183 (413)
T ss_pred             CCCCHHHHHHHcCCHHH
Confidence            99999999999998773

>KOG0509|consensus

Probab=99.84  E-value=1.9e-20  Score=185.17  Aligned_cols=140  Identities=24%  Similarity=0.253  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhc-CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC------cc
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF------TN  215 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~-g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~------~~  215 (367)
                      -+..++.|+..|+++.|        +.|++. |.++ +..|.+|.|+|||||.+++.+++++|+++|++.+.      ..
T Consensus        44 ~~~~~v~A~q~G~l~~v--------~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~st  114 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETV--------KELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGST  114 (600)
T ss_pred             hhhhhhhHhhcchHHHH--------HHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCC
Confidence            35689999999999999        666666 6555 46688999999999999999999999999998543      45


Q ss_pred             cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      ++|.++.+|++.++++|+++|+++.  |. .|.||||+||++|+.-+|-+||.+| +|++.+|.+|+||||+|+.+|+..
T Consensus       115 PLHWAar~G~~~vv~lLlqhGAdpt~~D~-~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAaykg~~~  192 (600)
T KOG0509|consen  115 PLHWAARNGHISVVDLLLQHGADPTLKDK-QGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAAYKGFAL  192 (600)
T ss_pred             cchHHHHcCcHHHHHHHHHcCCCCceecC-CCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHHHhcccH
Confidence            7888899999999999999998887  67 9999999999999999999999999 999999999999999999887655

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.82  E-value=9.1e-20  Score=182.02  Aligned_cols=143  Identities=18%  Similarity=0.202  Sum_probs=114.1

Q ss_pred             CCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----
Q psy4222         137 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----  211 (367)
Q Consensus       137 ~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----  211 (367)
                      ...+..+.|+||+|+..|+.+.|        ++|++.|+++ +.++..|.||||+|+..|+.+++++|++.|++.     
T Consensus       118 n~~~~~g~T~Lh~A~~~~~~~~v--------~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~  188 (434)
T PHA02874        118 NIKDAELKTFLHYAIKKGDLESI--------KMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN  188 (434)
T ss_pred             CCCCCCCccHHHHHHHCCCHHHH--------HHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence            33456677999999999999999        8888888887 577888889999999999999999998888753     


Q ss_pred             CCcccccccCCCChHHHHHHHHhcCCCC---------------------------------CCCCCCCcHHHHHHHcC-C
Q psy4222         212 AFTNLLYDSDTPSYIERSDILLDLYVNT---------------------------------PDKALNETPLHFAAKFG-S  257 (367)
Q Consensus       212 ~~~~~~~~~~~~~~~~~v~~Ll~~~~n~---------------------------------~d~~~g~TpLH~Aa~~g-~  257 (367)
                      ....+++.++..++.+++++|++.|++.                                 .+. .|+||||+|+..+ +
T Consensus       189 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~-~G~TpLh~A~~~~~~  267 (434)
T PHA02874        189 NGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDI-DGSTPLHHAINPPCD  267 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCC-CCCCHHHHHHhcCCc
Confidence            2345566677777888888888776442                                 334 6888888888875 7


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCC
Q psy4222         258 VECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD  290 (367)
Q Consensus       258 ~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g  290 (367)
                      .+++++|+++| ++++.+|..|+||||+|+..+
T Consensus       268 ~~iv~~Ll~~g-ad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        268 IDIIDILLYHK-ADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHhC
Confidence            88999999998 899999999999999998665

>PHA02795 ankyrin-like protein; Provisional

Probab=99.82  E-value=1.6e-19  Score=176.84  Aligned_cols=137  Identities=16%  Similarity=0.053  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHH--cCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC------
Q psy4222         142 QELVKLRKLIE--KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF------  213 (367)
Q Consensus       142 ~~lt~L~~A~~--~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~------  213 (367)
                      ...|+||.|+.  .|+.+.|        ++|+++|+++. .  ..+.||||+|+..|+.+++++|+.+|++..-      
T Consensus       115 ~~~~~L~~~~~n~~n~~eiV--------~~LI~~GADIn-~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l  183 (437)
T PHA02795        115 SVQDLLLYYLSNAYVEIDIV--------DFMVDHGAVIY-K--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDL  183 (437)
T ss_pred             cccHHHHHHHHhcCCCHHHH--------HHHHHCCCCCC-C--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchh
Confidence            35689999999  9999999        99999999984 3  3458999999999999999999999974211      


Q ss_pred             -----cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH
Q psy4222         214 -----TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS  286 (367)
Q Consensus       214 -----~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA  286 (367)
                           ....+.+...++.+++++|+.+|++++  +. .|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|
T Consensus       184 ~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~-~G~TpLh~Aa~~g~~eiVelLL~~G-AdIN~~d~~G~TpLh~A  261 (437)
T PHA02795        184 YKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDA-GGRTLLYRAIYAGYIDLVSWLLENG-ANVNAVMSNGYTCLDVA  261 (437)
T ss_pred             hhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHH
Confidence                 112233456788999999999997776  55 8999999999999999999999999 99999999999999999


Q ss_pred             hcCCc
Q psy4222         287 SGLDL  291 (367)
Q Consensus       287 ~~~g~  291 (367)
                      +..|.
T Consensus       262 a~~g~  266 (437)
T PHA02795        262 VDRGS  266 (437)
T ss_pred             HHcCC
Confidence            98884

>PHA02791 ankyrin-like protein; Provisional

Probab=99.82  E-value=1.5e-19  Score=170.03  Aligned_cols=141  Identities=13%  Similarity=0.058  Sum_probs=119.2

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CC
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AF  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~  213 (367)
                      .+..+.|+||+|+..|+.+.+        ++|+..|+++. .+  +|+||||+|+..|+.+++++|+..|++.     ..
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv--------~~Ll~~ga~~n-~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G   94 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLV--------CTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKG   94 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHH--------HHHHHCcCCCc-CC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence            345677999999999999999        89999998773 33  4689999999999999999999998763     45


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCC-CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCChHHHHHhcC
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALN-ETPLHFAAKFGSVECVKRLIGCAKIQTSVRN-KEGKTPLDSSSGL  289 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g-~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n-~~G~TPL~iA~~~  289 (367)
                      ..+++.++..++.+++++|++.|+++.  ++ .| .||||+|+..|+.++|++|++++ .+.  .| ..|.||||+|+..
T Consensus        95 ~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~-~g~~TpL~~Aa~~g~~eivk~LL~~~-~~~--~d~~~g~TpLh~Aa~~  170 (284)
T PHA02791         95 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEI-PST--FDLAILLSCIHITIKN  170 (284)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCcCccCC-CCCcHHHHHHHHcCCHHHHHHHHhcC-Ccc--cccccCccHHHHHHHc
Confidence            667788888999999999999997764  45 56 48999999999999999999987 332  33 3589999999999


Q ss_pred             CcHHH
Q psy4222         290 DLLEN  294 (367)
Q Consensus       290 g~~~~  294 (367)
                      |+.+.
T Consensus       171 g~~ei  175 (284)
T PHA02791        171 GHVDM  175 (284)
T ss_pred             CCHHH
Confidence            99874

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.7e-19  Score=162.82  Aligned_cols=139  Identities=19%  Similarity=0.123  Sum_probs=98.1

Q ss_pred             hhhHHHHHHHHHcC--CHHHHHHHHhcCChhHHhcCCCccccCC-CCCCcHHHHHHHc---CCHHHHHHHHhhcCCCC--
Q psy4222         141 SQELVKLRKLIEKG--NLADVRKLVWDNPRYLVSSGDFPTILHE-GCRYNALHVSTKA---VNPAMTEMLLEIIGNPA--  212 (367)
Q Consensus       141 ~~~lt~L~~A~~~G--~~~~v~~ll~~~p~~Ll~~g~~~~~~~d-~~G~TpLh~Aa~~---g~~~iv~~LL~~~~d~~--  212 (367)
                      ..+.||||.|+..+  +.+.+        ++|++.|+++ +.++ ..|+||||+|+..   ++.+++++|+++|++.+  
T Consensus        49 ~~g~TpLh~a~~~~~~~~eiv--------~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~  119 (209)
T PHA02859         49 DLYETPIFSCLEKDKVNVEIL--------KFLIENGADV-NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEE  119 (209)
T ss_pred             ccCCCHHHHHHHcCCCCHHHH--------HHHHHCCCCC-CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCc
Confidence            44567888888754  77778        7888888877 3444 4688888887653   46788888888877643  


Q ss_pred             ---Cccccccc--CCCChHHHHHHHHhcCCCCC--CCCCCCcHHHH-HHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHH
Q psy4222         213 ---FTNLLYDS--DTPSYIERSDILLDLYVNTP--DKALNETPLHF-AAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD  284 (367)
Q Consensus       213 ---~~~~~~~~--~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~-Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~  284 (367)
                         ...+++.+  ...++.+++++|++.|+++.  |. .|.||||. |+..|+.+++++|+++| ++++.+|..|+||||
T Consensus       120 d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~-~g~t~Lh~~a~~~~~~~iv~~Ll~~G-adi~~~d~~g~tpl~  197 (209)
T PHA02859        120 DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF-DNNNILYSYILFHSDKKIFDFLTSLG-IDINETNKSGYNCYD  197 (209)
T ss_pred             CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC-CCCcHHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCHHH
Confidence               22333332  23467788888888876654  44 78888884 55667888888888888 788888888888888


Q ss_pred             HHhcCC
Q psy4222         285 SSSGLD  290 (367)
Q Consensus       285 iA~~~g  290 (367)
                      +|..++
T Consensus       198 la~~~~  203 (209)
T PHA02859        198 LIKFRN  203 (209)
T ss_pred             HHhhhh
Confidence            887554

>PHA02946 ankyin-like protein; Provisional

Probab=99.81  E-value=1.4e-19  Score=181.02  Aligned_cols=142  Identities=13%  Similarity=0.076  Sum_probs=114.7

Q ss_pred             CCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcC--CHHHHHHHHhhcCCCC--
Q psy4222         137 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV--NPAMTEMLLEIIGNPA--  212 (367)
Q Consensus       137 ~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g--~~~iv~~LL~~~~d~~--  212 (367)
                      ...+..+.||||+|++.|+.+.|        ++|++.|+++ +.+|..|+||||+|+..+  ..+++++|++.|++.+  
T Consensus        66 n~~d~~G~TpLh~Aa~~g~~eiv--------~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~  136 (446)
T PHA02946         66 NETDDDGNYPLHIASKINNNRIV--------AMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNS  136 (446)
T ss_pred             CccCCCCCCHHHHHHHcCCHHHH--------HHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccc
Confidence            34556778999999999999999        9999999999 688999999999999876  4789999999998643  


Q ss_pred             ----CcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCChHHH
Q psy4222         213 ----FTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFG--SVECVKRLIGCAKIQTSVRNKEGKTPLD  284 (367)
Q Consensus       213 ----~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g--~~~vv~~LL~~g~ad~~~~n~~G~TPL~  284 (367)
                          ...+++ ++..++.+++++|++.|+++.  |+ .|+||||+|+..+  +.+++++|+++| ++++.+|.+|+||||
T Consensus       137 ~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~-~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-adin~~d~~G~TpLH  213 (446)
T PHA02946        137 VDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDK-FGKNHIHRHLMSDNPKASTISWMMKLG-ISPSKPDHDGNTPLH  213 (446)
T ss_pred             cCCCCCcHHH-HHHCCChHHHHHHHhccccccccCC-CCCCHHHHHHHhcCCCHHHHHHHHHcC-CCCcccCCCCCCHHH
Confidence                233444 344577888888888876554  66 8888888887754  468888888888 888888888888888


Q ss_pred             HHhcCC
Q psy4222         285 SSSGLD  290 (367)
Q Consensus       285 iA~~~g  290 (367)
                      +|+..+
T Consensus       214 ~Aa~~~  219 (446)
T PHA02946        214 IVCSKT  219 (446)
T ss_pred             HHHHcC
Confidence            888765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.81  E-value=6.5e-19  Score=177.73  Aligned_cols=198  Identities=18%  Similarity=0.148  Sum_probs=152.3

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc----CCCCCCcchhhhhhcccCCCCCCCCChhhHHHHHHHH--HcCCH
Q psy4222          83 RNFQDAQNFAYHGSCGVNTSLLEAPASPSTVT----AADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLI--EKGNL  156 (367)
Q Consensus        83 ~~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~~~~f~~~~~~~lt~L~~A~--~~G~~  156 (367)
                      ++.+-++.+.+.|.++...+  ....++....    +...+..+-+..++..+.  ++...+..+.|+||.|+  ..|+.
T Consensus        46 ~~~~ivk~Ll~~g~~~~~~~--~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga--~i~~~d~~g~tpL~~A~~~~~~~~  121 (480)
T PHA03100         46 RNIDVVKILLDNGADINSST--KNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA--NVNAPDNNGITPLLYAISKKSNSY  121 (480)
T ss_pred             CCHHHHHHHHHcCCCCCCcc--ccCcCHHHHHHHHHHHhhchHHHHHHHHHCCC--CCCCCCCCCCchhhHHHhcccChH
Confidence            45666788888887665432  1222222210    111122222333344333  33556677889999999  99999


Q ss_pred             HHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcC--CHHHHHHHHhhcCCC-----CCcccccccCCCChHHHH
Q psy4222         157 ADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV--NPAMTEMLLEIIGNP-----AFTNLLYDSDTPSYIERS  229 (367)
Q Consensus       157 ~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g--~~~iv~~LL~~~~d~-----~~~~~~~~~~~~~~~~~v  229 (367)
                      +.+        ++|++.|+++ +..+..|+||||+|+..|  +.+++++|++.|++.     ....+++.+...++.+++
T Consensus       122 ~iv--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv  192 (480)
T PHA03100        122 SIV--------EYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVI  192 (480)
T ss_pred             HHH--------HHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHH
Confidence            999        9999999888 577889999999999999  999999999999864     345567777888899999


Q ss_pred             HHHHhcCCCCCCC-CCC------CcHHHHHHHcCC--HHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         230 DILLDLYVNTPDK-ALN------ETPLHFAAKFGS--VECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       230 ~~Ll~~~~n~~d~-~~g------~TpLH~Aa~~g~--~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++|++.|++.... ..|      .||||+|+..|+  .++|++|+++| ++++.+|..|.||||+|+..++.+.
T Consensus       193 ~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g-~din~~d~~g~TpL~~A~~~~~~~i  265 (480)
T PHA03100        193 KFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG-VPINIKDVYGFTPLHYAVYNNNPEF  265 (480)
T ss_pred             HHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            9999999877632 256      899999999999  99999999999 9999999999999999999988764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.80  E-value=3.8e-19  Score=180.44  Aligned_cols=155  Identities=20%  Similarity=0.139  Sum_probs=121.4

Q ss_pred             hhcccCCCCCCCCChhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHc--CCHHHH
Q psy4222         127 LAAAEKPSPFKSLKSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKA--VNPAMT  201 (367)
Q Consensus       127 ~~~~e~~~~f~~~~~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~--g~~~iv  201 (367)
                      ++..+..  ....+..+.||||.|+..   |+.+.+        ++|++.|+++...++..|+||||+|+..  ++.+++
T Consensus        94 Ll~~Gad--in~~d~~g~tpL~~a~~~~~~~~~eiv--------~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv  163 (494)
T PHA02989         94 LLKFGAD--INLKTFNGVSPIVCFIYNSNINNCDML--------RFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVI  163 (494)
T ss_pred             HHHCCCC--CCCCCCCCCcHHHHHHHhcccCcHHHH--------HHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHH
Confidence            3444433  344456678999988765   678888        9999999998557788999999998764  688999


Q ss_pred             HHHHhhcCCCCC------cccccc----cCCCChHHHHHHHHhcCCCCC-------------------------------
Q psy4222         202 EMLLEIIGNPAF------TNLLYD----SDTPSYIERSDILLDLYVNTP-------------------------------  240 (367)
Q Consensus       202 ~~LL~~~~d~~~------~~~~~~----~~~~~~~~~v~~Ll~~~~n~~-------------------------------  240 (367)
                      ++|++.|++...      ..+++.    +...++.+++++|++.|+++.                               
T Consensus       164 ~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l  243 (494)
T PHA02989        164 KILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFI  243 (494)
T ss_pred             HHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHH
Confidence            999999987432      122221    123457788888888775543                               


Q ss_pred             ---------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         241 ---------DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       241 ---------d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                               |. .|+||||+||..|+.++|++|+++| +|++.+|..|+||||+|+..++.+
T Consensus       244 ~~~advn~~d~-~G~TpL~~Aa~~~~~~~v~~LL~~G-adin~~d~~G~TpL~~A~~~~~~~  303 (494)
T PHA02989        244 LKYIKINKKDK-KGFNPLLISAKVDNYEAFNYLLKLG-DDIYNVSKDGDTVLTYAIKHGNID  303 (494)
T ss_pred             HhCCCCCCCCC-CCCCHHHHHHHhcCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHH
Confidence                     23 5999999999999999999999999 999999999999999999998876

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.80  E-value=3e-19  Score=180.37  Aligned_cols=143  Identities=21%  Similarity=0.118  Sum_probs=121.8

Q ss_pred             CCCCChh-hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC--
Q psy4222         136 FKSLKSQ-ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA--  212 (367)
Q Consensus       136 f~~~~~~-~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~--  212 (367)
                      ....+.. +.|+||.|+..|+.+.+        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.|++.+  
T Consensus       160 in~~~~~~g~tpLh~A~~~~~~~iv--------~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~  230 (477)
T PHA02878        160 INMKDRHKGNTALHYATENKDQRLT--------ELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR  230 (477)
T ss_pred             CCccCCCCCCCHHHHHHhCCCHHHH--------HHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCC
Confidence            3334444 78999999999999999        9999999998 6789999999999999999999999999998643  


Q ss_pred             ---CcccccccC-CCChHHHHHHHHhcCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH
Q psy4222         213 ---FTNLLYDSD-TPSYIERSDILLDLYVNTPDK--ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS  286 (367)
Q Consensus       213 ---~~~~~~~~~-~~~~~~~v~~Ll~~~~n~~d~--~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA  286 (367)
                         ...+++.++ ..++.+++++|++.|++++..  ..|+||||+|  .++.+++++|+++| +|++.+|..|+||||+|
T Consensus       231 d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~g-adin~~d~~g~TpL~~A  307 (477)
T PHA02878        231 DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYG-ADINSLNSYKLTPLSSA  307 (477)
T ss_pred             CCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCC-CCCCCcCCCCCCHHHHH
Confidence               334444444 457899999999999887743  2699999999  57899999999999 99999999999999999


Q ss_pred             hcCC
Q psy4222         287 SGLD  290 (367)
Q Consensus       287 ~~~g  290 (367)
                      +..+
T Consensus       308 ~~~~  311 (477)
T PHA02878        308 VKQY  311 (477)
T ss_pred             HHHc
Confidence            9643

>PHA02798 ankyrin-like protein; Provisional

Probab=99.80  E-value=4.2e-19  Score=179.93  Aligned_cols=196  Identities=14%  Similarity=0.090  Sum_probs=142.0

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC----CCCcchhhhhhcccCCCCCCCCChhhHHHHHHHHHcC---C
Q psy4222          83 RNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAAD----PSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKG---N  155 (367)
Q Consensus        83 ~~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G---~  155 (367)
                      .+.+-++.+.+.|.+++..+  ..+.+|.-.....    ....+-+.-++..+.  +....+..+.||||.|+..|   +
T Consensus        49 ~~~~iv~~Ll~~Gadvn~~d--~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Ga--diN~~d~~G~TpLh~a~~~~~~~~  124 (489)
T PHA02798         49 PSTDIVKLFINLGANVNGLD--NEYSTPLCTILSNIKDYKHMLDIVKILIENGA--DINKKNSDGETPLYCLLSNGYINN  124 (489)
T ss_pred             CCHHHHHHHHHCCCCCCCCC--CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCC--CCCCCCCCcCcHHHHHHHcCCcCh
Confidence            35667888889998776543  3333332211100    011122333444444  34445567889999999986   6


Q ss_pred             HHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCC---HHHHHHHHhhcCCCCC------ccccccc----CC
Q psy4222         156 LADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN---PAMTEMLLEIIGNPAF------TNLLYDS----DT  222 (367)
Q Consensus       156 ~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~---~~iv~~LL~~~~d~~~------~~~~~~~----~~  222 (367)
                      .+.+        ++|++.|+++ +.+|..|+||||+|++.|+   .+++++|++.|++.+.      ..+++..    ..
T Consensus       125 ~~iv--------~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~  195 (489)
T PHA02798        125 LEIL--------LFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNID  195 (489)
T ss_pred             HHHH--------HHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccc
Confidence            7888        9999999999 6889999999999999998   9999999999987432      2333322    23


Q ss_pred             CChHHHHHHHHhcCCC-----------------------------------------CCCCCCCCcHHHHHHHcCCHHHH
Q psy4222         223 PSYIERSDILLDLYVN-----------------------------------------TPDKALNETPLHFAAKFGSVECV  261 (367)
Q Consensus       223 ~~~~~~v~~Ll~~~~n-----------------------------------------~~d~~~g~TpLH~Aa~~g~~~vv  261 (367)
                      .++.+++++|++.|++                                         ..|. .|+||||+||.+|+.+++
T Consensus       196 ~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~-~G~TPL~~A~~~~~~~~v  274 (489)
T PHA02798        196 RIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDE-LGFNPLYYSVSHNNRKIF  274 (489)
T ss_pred             cCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCc-CCccHHHHHHHcCcHHHH
Confidence            3456677777666532                                         2344 799999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         262 KRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       262 ~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      ++|+++| ||++.+|..|+||||+|+..++.+
T Consensus       275 ~~LL~~G-Adin~~d~~G~TpL~~A~~~~~~~  305 (489)
T PHA02798        275 EYLLQLG-GDINIITELGNTCLFTAFENESKF  305 (489)
T ss_pred             HHHHHcC-CcccccCCCCCcHHHHHHHcCcHH
Confidence            9999999 999999999999999999888765

>KOG0512|consensus

Probab=99.79  E-value=4.6e-19  Score=149.34  Aligned_cols=117  Identities=23%  Similarity=0.217  Sum_probs=100.1

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccC
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  221 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~  221 (367)
                      .....+.+|++.+.+..|        +.|++..++-.+.+|.+||||||-|++.||.+||+.||..|+++.         
T Consensus        62 dp~rl~lwaae~nrl~eV--------~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~---------  124 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEV--------QRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE---------  124 (228)
T ss_pred             CHHHHHHHHHhhccHHHH--------HHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc---------
Confidence            334578999999999999        555555666668889999999999999999999999999887743         


Q ss_pred             CCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         222 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       222 ~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                                       .... .||||||-||++++.+|+.+||++| +|+|++.+..+||||+||...+...
T Consensus       125 -----------------a~T~-~GWTPLhSAckWnN~~va~~LLqhg-aDVnA~t~g~ltpLhlaa~~rn~r~  178 (228)
T KOG0512|consen  125 -----------------AKTN-EGWTPLHSACKWNNFEVAGRLLQHG-ADVNAQTKGLLTPLHLAAGNRNSRD  178 (228)
T ss_pred             -----------------cccc-cCccchhhhhcccchhHHHHHHhcc-CcccccccccchhhHHhhcccchHH
Confidence                             2233 8999999999999999999999999 9999999999999999997665543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.79  E-value=2.3e-18  Score=173.31  Aligned_cols=196  Identities=16%  Similarity=0.130  Sum_probs=136.9

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC--CCcchhhhhhcccCCCCCCCCChhhHHHHHHHHHcC-CHHHH
Q psy4222          83 RNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADP--SALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKG-NLADV  159 (367)
Q Consensus        83 ~~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G-~~~~v  159 (367)
                      .+.+.++.+.+.|.+.+..+  ..+.+|.-......  ...+.+..++..+..  ....+..+.||||.|+..| ..+.+
T Consensus        25 ~~~~~v~~Ll~~ga~vn~~~--~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad--in~~~~~g~TpLh~A~~~~~~~~iv  100 (471)
T PHA03095         25 VTVEEVRRLLAAGADVNFRG--EYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD--VNAPERCGFTPLHLYLYNATTLDVI  100 (471)
T ss_pred             CCHHHHHHHHHcCCCcccCC--CCCCCHHHHHHHhcCCChHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCcHHHH
Confidence            35677888888887665442  22333322221111  122233334444443  3334457789999999999 48888


Q ss_pred             HHHHhcCChhHHhcCCCccccCCCCCCcHHHHHH--HcCCHHHHHHHHhhcCCCCC-----ccccccc--CCCChHHHHH
Q psy4222         160 RKLVWDNPRYLVSSGDFPTILHEGCRYNALHVST--KAVNPAMTEMLLEIIGNPAF-----TNLLYDS--DTPSYIERSD  230 (367)
Q Consensus       160 ~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa--~~g~~~iv~~LL~~~~d~~~-----~~~~~~~--~~~~~~~~v~  230 (367)
                              ++|++.|+++ +.++..|+||||+|+  ..++.+++++|++.|++.+.     ..+++.+  ......++++
T Consensus       101 --------~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~  171 (471)
T PHA03095        101 --------KLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLR  171 (471)
T ss_pred             --------HHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHH
Confidence                    8889999888 678888999999999  55688999999999886443     2333322  2244678889


Q ss_pred             HHHhcCCCCC--CCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         231 ILLDLYVNTP--DKALNETPLHFAAKF--GSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       231 ~Ll~~~~n~~--d~~~g~TpLH~Aa~~--g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      +|++.|++..  +. .|+||||+|+..  ++.+++++|+++| ++++.+|..|+||||+|+..+...
T Consensus       172 ~Ll~~g~~~~~~d~-~g~t~Lh~~~~~~~~~~~i~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~~~~~~  236 (471)
T PHA03095        172 LLIDAGADVYAVDD-RFRSLLHHHLQSFKPRARIVRELIRAG-CDPAATDMLGNTPLHSMATGSSCK  236 (471)
T ss_pred             HHHHcCCCCcccCC-CCCCHHHHHHHHCCCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCch
Confidence            9998886665  44 788999988875  6788888899888 888888889999999988877654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.79  E-value=8.1e-19  Score=152.66  Aligned_cols=122  Identities=14%  Similarity=0.170  Sum_probs=104.1

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHH---HHHHHhhcCCCCCccc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM---TEMLLEIIGNPAFTNL  216 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~i---v~~LL~~~~d~~~~~~  216 (367)
                      +..+.+.||.||+.|+++.+.+++    ++|++.|... +.+|..|+||||+|+..|+.++   +++|++.|++      
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~----~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad------   85 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVA----PFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD------   85 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHH----HHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC------
Confidence            344567899999999998888888    8888888776 5778899999999999998654   7888887765      


Q ss_pred             ccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         217 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       217 ~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~-~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                                          ++..+...|+||||+|+..|+.+++++|+. .| ++++.+|..|+||||+|+..++.+
T Consensus        86 --------------------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~~d~~g~tpL~~A~~~~~~~  142 (166)
T PHA02743         86 --------------------INARELGTGNTLLHIAASTKNYELAEWLCRQLG-VNLGAINYQHETAYHIAYKMRDRR  142 (166)
T ss_pred             --------------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC-CCccCcCCCCCCHHHHHHHcCCHH
Confidence                                555552279999999999999999999995 78 999999999999999999988765

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=2.9e-18  Score=149.58  Aligned_cols=123  Identities=13%  Similarity=0.183  Sum_probs=97.8

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhH--HhcCCCccccCCCCCCcHHHHHHHcCCH----HHHHHHHhhcCCCCC
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYL--VSSGDFPTILHEGCRYNALHVSTKAVNP----AMTEMLLEIIGNPAF  213 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~L--l~~g~~~~~~~d~~G~TpLh~Aa~~g~~----~iv~~LL~~~~d~~~  213 (367)
                      +..+.|+||.|++.|+.+.|+.++    .++  ...|++. +.+|..|+||||+|+..|+.    +++++|++.+++   
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~----~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad---   89 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFT----PFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD---   89 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHH----HHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC---
Confidence            345668999999999999995443    211  1234555 57788999999999999994    677777776654   


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLL  292 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~-g~ad~~~~n~~G~TPL~iA~~~g~~  292 (367)
                                             ++..+...|+||||+|+..|+.+++++|+.. | ++++.+|.+|+||||+|+..++.
T Consensus        90 -----------------------in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g-~~~~~~n~~g~tpL~~A~~~~~~  145 (169)
T PHA02741         90 -----------------------INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPG-IDLHFCNADNKSPFELAIDNEDV  145 (169)
T ss_pred             -----------------------CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCCHHHHHHHCCCH
Confidence                                   4444422799999999999999999999984 7 99999999999999999998876


Q ss_pred             HH
Q psy4222         293 EN  294 (367)
Q Consensus       293 ~~  294 (367)
                      +.
T Consensus       146 ~i  147 (169)
T PHA02741        146 AM  147 (169)
T ss_pred             HH
Confidence            53

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.78  E-value=2.1e-18  Score=155.69  Aligned_cols=136  Identities=15%  Similarity=0.014  Sum_probs=109.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcC--CHHHHHHHHhhcCCCC------Ccc
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV--NPAMTEMLLEIIGNPA------FTN  215 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g--~~~iv~~LL~~~~d~~------~~~  215 (367)
                      .+|||.|+..|+++.|        +.|+..+    +..+..|.||||+|+..+  +.+++++|++.|++.+      ...
T Consensus        22 ~~pL~~A~~~~~~~~v--------k~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~T   89 (209)
T PHA02859         22 CNPLFYYVEKDDIEGV--------KKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLS   89 (209)
T ss_pred             CcHHHHHHHhCcHHHH--------HHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCC
Confidence            5799999999999999        6665543    345788999999999854  8999999999998743      233


Q ss_pred             cccccC---CCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH-h
Q psy4222         216 LLYDSD---TPSYIERSDILLDLYVNTP--DKALNETPLHFAAK--FGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS-S  287 (367)
Q Consensus       216 ~~~~~~---~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~--~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA-~  287 (367)
                      +++.++   ..+..+++++|+++|++++  +. .|.||||+|+.  .++.+++++|+++| ++++.+|..|.||||.+ +
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~-~G~TpLh~a~~~~~~~~~iv~~Li~~g-adin~~d~~g~t~Lh~~a~  167 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILIDSGSSITEEDE-DGKNLLHMYMCNFNVRINVIKLLIDSG-VSFLNKDFDNNNILYSYIL  167 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhccCCHHHHHHHHHcC-CCcccccCCCCcHHHHHHH
Confidence            444332   2457899999999997766  56 89999999986  46899999999999 99999999999999965 4


Q ss_pred             cCCcHH
Q psy4222         288 GLDLLE  293 (367)
Q Consensus       288 ~~g~~~  293 (367)
                      ..++.+
T Consensus       168 ~~~~~~  173 (209)
T PHA02859        168 FHSDKK  173 (209)
T ss_pred             hcCCHH
Confidence            555544

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.77  E-value=3.3e-18  Score=183.31  Aligned_cols=140  Identities=17%  Similarity=0.143  Sum_probs=126.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCccccc
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNLLY  218 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~~~  218 (367)
                      .++||.||..|+.+.+        +.|+..|+++ +..|..|.||||+||..|+.+++++|+++|++.     ....+++
T Consensus       526 ~~~L~~Aa~~g~~~~l--------~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~  596 (823)
T PLN03192        526 ASNLLTVASTGNAALL--------EELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALW  596 (823)
T ss_pred             hhHHHHHHHcCCHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence            4789999999999999        8888899998 688999999999999999999999999998864     3566788


Q ss_pred             ccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         219 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      .++..++.+++++|++.+...... .|.++||+||..|+.+++++|+++| ++++.+|.+|+||||+|+..|+.+.
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~~~~~-~~~~~L~~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpLh~A~~~g~~~i  670 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASISDPH-AAGDLLCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATALQVAMAEDHVDM  670 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCcccCcc-cCchHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            888899999999999887666655 7889999999999999999999999 9999999999999999999998774

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.76  E-value=6.9e-18  Score=177.65  Aligned_cols=123  Identities=19%  Similarity=0.174  Sum_probs=100.7

Q ss_pred             hhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC------CcccccccCCCChHHHHHHHHhcCCCCC-
Q psy4222         168 RYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA------FTNLLYDSDTPSYIERSDILLDLYVNTP-  240 (367)
Q Consensus       168 ~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~------~~~~~~~~~~~~~~~~v~~Ll~~~~n~~-  240 (367)
                      ++|+..|+++ +.+|..|+||||+|+..|+.+++++|++.|++..      .+.+++.+...+...++++|++.|++++ 
T Consensus       359 ~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~  437 (682)
T PHA02876        359 ITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS  437 (682)
T ss_pred             HHHHHcCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCc
Confidence            5677888888 6788899999999999999999999999988643      2333333444566778999999987665 


Q ss_pred             -CCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         241 -DKALNETPLHFAAKFG-SVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       241 -d~~~g~TpLH~Aa~~g-~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                       |. .|+||||+|+..| +.+++++|+++| ++++.+|..|.|||++|+..+.+.
T Consensus       438 ~d~-~G~TpLh~Aa~~~~~~~iv~lLl~~G-ad~n~~d~~g~tpl~~a~~~~~~v  490 (682)
T PHA02876        438 KNK-DLSTPLHYACKKNCKLDVIEMLLDNG-ADVNAINIQNQYPLLIALEYHGIV  490 (682)
T ss_pred             CCC-CCChHHHHHHHhCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhCCHH
Confidence             66 8999999999977 689999999999 999999999999999998665443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=5.8e-18  Score=159.59  Aligned_cols=112  Identities=17%  Similarity=0.206  Sum_probs=98.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccC----CCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILH----EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS  220 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~----d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~  220 (367)
                      ++||.|+..|+.+.+        ++|++.|+++. .+    +..|.||||+|+..|+.+++++|+++|++          
T Consensus        35 ~lL~~A~~~~~~eiv--------k~LL~~GAdiN-~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD----------   95 (300)
T PHA02884         35 NILYSSIKFHYTDII--------DAILKLGADPE-APFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD----------   95 (300)
T ss_pred             HHHHHHHHcCCHHHH--------HHHHHCCCCcc-ccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence            478999999999999        99999999984 44    45899999999999999999999999977          


Q ss_pred             CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222         221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL  292 (367)
Q Consensus       221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~  292 (367)
                                      ++..+...|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.
T Consensus        96 ----------------VN~~~~~~g~TpLh~Aa~~~~~eivklLL~~G-Adin~kd~~G~TpL~~A~~~~~~  150 (300)
T PHA02884         96 ----------------VNRYAEEAKITPLYISVLHGCLKCLEILLSYG-ADINIQTNDMVTPIELALMICNN  150 (300)
T ss_pred             ----------------cCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhCCh
Confidence                            55543227999999999999999999999999 99999999999999999875443

>PHA02946 ankyin-like protein; Provisional

Probab=99.76  E-value=1.5e-17  Score=166.40  Aligned_cols=192  Identities=14%  Similarity=0.090  Sum_probs=141.2

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCcchhhhhhcccCCCCCCCCChhhHHHHHHHHHcCC--HHHHHHH
Q psy4222          85 FQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGN--LADVRKL  162 (367)
Q Consensus        85 ~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~--~~~v~~l  162 (367)
                      .+-++.+...|.+++..+  ..+.+|.-.+.. .+..+.+..++..+..  ....+..+.||||+|+..++  .+.+   
T Consensus        52 ~~iv~~Ll~~Gadvn~~d--~~G~TpLh~Aa~-~g~~eiv~lLL~~GAd--in~~d~~g~TpLh~A~~~~~~~~e~v---  123 (446)
T PHA02946         52 ERFVEELLHRGYSPNETD--DDGNYPLHIASK-INNNRIVAMLLTHGAD--PNACDKQHKTPLYYLSGTDDEVIERI---  123 (446)
T ss_pred             HHHHHHHHHCcCCCCccC--CCCCCHHHHHHH-cCCHHHHHHHHHCcCC--CCCCCCCCCCHHHHHHHcCCchHHHH---
Confidence            345778888888766543  233333322322 1222333334444433  33456778899999998764  7778   


Q ss_pred             HhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Cccccccc--CCCChHHHHHHHHhc
Q psy4222         163 VWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLYDS--DTPSYIERSDILLDL  235 (367)
Q Consensus       163 l~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~~~--~~~~~~~~v~~Ll~~  235 (367)
                           ++|++.|+++....+..|.|||| ||..|+.+++++|++.|++.+     ...+++.+  ...+..+++++|++.
T Consensus       124 -----~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~  197 (446)
T PHA02946        124 -----NLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKL  197 (446)
T ss_pred             -----HHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHc
Confidence                 99999999986557889999998 777899999999999988643     33344333  345567899999999


Q ss_pred             CCCCC--CCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         236 YVNTP--DKALNETPLHFAAKFG--SVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       236 ~~n~~--d~~~g~TpLH~Aa~~g--~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      |+++.  |. .|+||||+|+..|  +.+++++|+. | ++++.+|..|+||||+|+..++..
T Consensus       198 Gadin~~d~-~G~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~~~  256 (446)
T PHA02946        198 GISPSKPDH-DGNTPLHIVCSKTVKNVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLSPA  256 (446)
T ss_pred             CCCCcccCC-CCCCHHHHHHHcCCCcHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCChH
Confidence            98776  55 8999999999986  8899999995 7 999999999999999999887643

>KOG0502|consensus

Probab=99.76  E-value=2.1e-18  Score=150.44  Aligned_cols=155  Identities=17%  Similarity=0.212  Sum_probs=127.2

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCc----
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT----  214 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~----  214 (367)
                      ++.-..+++.+++.+.+++.+        ..+.+   +..+..|..|.|||.||+..|++.+|++||+.|+++...    
T Consensus       125 vs~~p~s~~slsVhql~L~~~--------~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~r  193 (296)
T KOG0502|consen  125 VSLMPWSPLSLSVHQLHLDVV--------DLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYR  193 (296)
T ss_pred             cccccCChhhHHHHHHHHHHH--------HHHhh---ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhh
Confidence            344556788999998888887        33322   222455899999999999999999999999999997643    


Q ss_pred             -ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         215 -NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       215 -~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                       .++.-+...|+.++|++|+++++|++  |. +|.|||-||++.||.+||+.||..| |+++..+..|++++++|+..|.
T Consensus       194 esALsLAt~ggytdiV~lLL~r~vdVNvyDw-NGgTpLlyAvrgnhvkcve~Ll~sG-Ad~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  194 ESALSLATRGGYTDIVELLLTREVDVNVYDW-NGGTPLLYAVRGNHVKCVESLLNSG-ADVTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             hhhHhHHhcCChHHHHHHHHhcCCCcceecc-CCCceeeeeecCChHHHHHHHHhcC-CCcccccccCCcHHHHHHHhhh
Confidence             34445578999999999999987776  77 9999999999999999999999999 9999999999999999997764


Q ss_pred             --HHHHHhhhchHHHHh
Q psy4222         292 --LENYLHTKLLDTVAA  306 (367)
Q Consensus       292 --~~~ll~~~~~~~l~~  306 (367)
                        +..+++.+.+.++..
T Consensus       272 r~Vqqvie~h~lkl~Q~  288 (296)
T KOG0502|consen  272 RIVQQVIEKHALKLCQD  288 (296)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence              556677666666543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.76  E-value=7.3e-18  Score=180.63  Aligned_cols=153  Identities=18%  Similarity=0.118  Sum_probs=130.0

Q ss_pred             chhhhhhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHH
Q psy4222         122 PQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT  201 (367)
Q Consensus       122 ~~~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv  201 (367)
                      +.+..++..+..  ....+..+.|+||.|+..|+.+++        ++|++.|+++ +.+|..|+||||+|+..|+.+++
T Consensus       539 ~~l~~Ll~~G~d--~n~~d~~G~TpLh~Aa~~g~~~~v--------~~Ll~~gadi-n~~d~~G~TpL~~A~~~g~~~iv  607 (823)
T PLN03192        539 ALLEELLKAKLD--PDIGDSKGRTPLHIAASKGYEDCV--------LVLLKHACNV-HIRDANGNTALWNAISAKHHKIF  607 (823)
T ss_pred             HHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcChHHHH--------HHHHhcCCCC-CCcCCCCCCHHHHHHHhCCHHHH
Confidence            334445544443  334556778999999999999999        9999999998 68899999999999999999999


Q ss_pred             HHHHhhcCCC---CCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q psy4222         202 EMLLEIIGNP---AFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN  276 (367)
Q Consensus       202 ~~LL~~~~d~---~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n  276 (367)
                      ++|++.++..   ....+++.++..++.+++++|+++|++++  |. .|+||||+|+..|+.++|++|+++| |+++.+|
T Consensus       608 ~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~G-Adv~~~~  685 (823)
T PLN03192        608 RILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH-QGATALQVAMAEDHVDMVRLLIMNG-ADVDKAN  685 (823)
T ss_pred             HHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCCC
Confidence            9999876532   23456777888999999999999997765  66 8999999999999999999999999 9999999


Q ss_pred             CCC-ChHHHHHh
Q psy4222         277 KEG-KTPLDSSS  287 (367)
Q Consensus       277 ~~G-~TPL~iA~  287 (367)
                      .+| .||++++.
T Consensus       686 ~~g~~t~~~l~~  697 (823)
T PLN03192        686 TDDDFSPTELRE  697 (823)
T ss_pred             CCCCCCHHHHHH
Confidence            998 99999885

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.75  E-value=8e-18  Score=175.18  Aligned_cols=138  Identities=17%  Similarity=0.102  Sum_probs=110.7

Q ss_pred             ChhhHHHHHHHHHc--CCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCC--HHHHHHHHhhcCCCCC--
Q psy4222         140 KSQELVKLRKLIEK--GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN--PAMTEMLLEIIGNPAF--  213 (367)
Q Consensus       140 ~~~~lt~L~~A~~~--G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~--~~iv~~LL~~~~d~~~--  213 (367)
                      +..+.|+||.|+..  ++.+.+        ++|++.|+++ +.+|..|+||||+|+..|+  .+++++||+.|++.+.  
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIV--------klLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD  244 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDIL--------EWLCNNGVNV-NLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKC  244 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCC
Confidence            45567899987654  678888        8899999888 6788889999999999885  4899999999887432  


Q ss_pred             ----cccccc------------------------------------cCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHH
Q psy4222         214 ----TNLLYD------------------------------------SDTPSYIERSDILLDLYVNTP--DKALNETPLHF  251 (367)
Q Consensus       214 ----~~~~~~------------------------------------~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~  251 (367)
                          +++++.                                    ++..++.+++++|++.|+++.  |. .|+||||+
T Consensus       245 ~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~-~G~TPLH~  323 (764)
T PHA02716        245 VNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDS-AGRTCLHQ  323 (764)
T ss_pred             CCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCC-CCCCHHHH
Confidence                222211                                    123467889999999997665  66 89999999


Q ss_pred             HHH--cCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222         252 AAK--FGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG  288 (367)
Q Consensus       252 Aa~--~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~  288 (367)
                      |+.  .++.++|++|+++| ++++.+|..|+||||+|+.
T Consensus       324 Aaa~~~~~~eIVklLLe~G-ADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        324 YILRHNISTDIIKLLHEYG-NDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             HHHHhCCCchHHHHHHHcC-CCCccCCCCCCCHHHHHHH
Confidence            874  46899999999999 9999999999999999864

>KOG0510|consensus

Probab=99.74  E-value=9.1e-18  Score=169.43  Aligned_cols=144  Identities=22%  Similarity=0.238  Sum_probs=107.1

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhh-----cC-----
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI-----IG-----  209 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~-----~~-----  209 (367)
                      +.-++||||.||..++.+..        +.|+..|++| .-.|..|++|+|.|++.|..++.+..+.+     +.     
T Consensus       151 de~~~TpLh~A~~~~~~E~~--------k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~  221 (929)
T KOG0510|consen  151 DENGFTPLHLAARKNKVEAK--------KELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFD  221 (929)
T ss_pred             ccCCCchhhHHHhcChHHHH--------HHHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccc
Confidence            34455666666666666655        5555666666 34455566666666666666666666662     11     


Q ss_pred             CCCCcccccccCCCChHHHHHHHHhcC-----------------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy4222         210 NPAFTNLLYDSDTPSYIERSDILLDLY-----------------VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQT  272 (367)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~v~~Ll~~~-----------------~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~  272 (367)
                      +.+...+++.+...|++++++.+++.+                 ++..|+ .|.||||+||+.|+.++|+.|+..| +++
T Consensus       222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~-dg~tpLH~a~r~G~~~svd~Ll~~G-a~I  299 (929)
T KOG0510|consen  222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDN-DGCTPLHYAARQGGPESVDNLLGFG-ASI  299 (929)
T ss_pred             cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccc-cCCchHHHHHHcCChhHHHHHHHcC-Ccc
Confidence            245566677778899999999999775                 333355 8999999999999999999999999 999


Q ss_pred             CCCCCCCChHHHHHhcCCcHHH
Q psy4222         273 SVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       273 ~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +.+|+++.||||.|+..|.+..
T Consensus       300 ~~kn~d~~spLH~AA~yg~~nt  321 (929)
T KOG0510|consen  300 NSKNKDEESPLHFAAIYGRINT  321 (929)
T ss_pred             cccCCCCCCchHHHHHcccHHH
Confidence            9999999999999999987664

>KOG0510|consensus

Probab=99.74  E-value=5.7e-18  Score=170.90  Aligned_cols=134  Identities=22%  Similarity=0.202  Sum_probs=120.3

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhh-c------CCCCC
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI-I------GNPAF  213 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~-~------~d~~~  213 (367)
                      ..+.||||+||++|+.+.|        ..|+..|++. +.++.++.||||.||++|+...|+.||+. +      .|-..
T Consensus       271 ~dg~tpLH~a~r~G~~~sv--------d~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g  341 (929)
T KOG0510|consen  271 NDGCTPLHYAARQGGPESV--------DNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHG  341 (929)
T ss_pred             ccCCchHHHHHHcCChhHH--------HHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccC
Confidence            3457899999999999999        9999999999 68889999999999999999999999992 2      23445


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC-----CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHH
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP-----DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDS  285 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~-----d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~i  285 (367)
                      ..++|.++..|+..++++|++.|++..     |. +|.||||+|+++|+..+|++|+.+| |++..+|+.|.+++++
T Consensus       342 ~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~-dg~TaLH~Aa~~g~~~av~~Li~~G-a~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  342 MTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADS-DGNTALHLAAKYGNTSAVQKLISHG-ADIGVKNKKGKSAFDT  416 (929)
T ss_pred             CCchhhhhhcCHHHHHHHHHhcChhhhccccccc-CCchhhhHHHHhccHHHHHHHHHcC-Cceeeccccccccccc
Confidence            677788889999999999999997665     66 9999999999999999999999999 9999999999999995

>PHA03095 ankyrin-like protein; Provisional

Probab=99.74  E-value=3.8e-17  Score=164.43  Aligned_cols=155  Identities=17%  Similarity=0.112  Sum_probs=127.9

Q ss_pred             chhhhhhcccCCCCCCCCChhhHHHHHHHHHcC---CHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcC-C
Q psy4222         122 PQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKG---NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV-N  197 (367)
Q Consensus       122 ~~~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G---~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g-~  197 (367)
                      +.+..++..+....++  +..+.|+||.|+..|   +.+.+        ++|++.|+++ +.++..|+||||+|+..| +
T Consensus        28 ~~v~~Ll~~ga~vn~~--~~~g~t~Lh~a~~~~~~~~~~iv--------~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         28 EEVRRLLAAGADVNFR--GEYGKTPLHLYLHYSSEKVKDIV--------RLLLEAGADV-NAPERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHHHHHHHcCCCcccC--CCCCCCHHHHHHHhcCCChHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCc
Confidence            3444556555554444  355679999999999   99999        9999999998 678889999999999999 5


Q ss_pred             HHHHHHHHhhcCCCC-----CcccccccC--CCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcC--CHHHHHHHHh
Q psy4222         198 PAMTEMLLEIIGNPA-----FTNLLYDSD--TPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFG--SVECVKRLIG  266 (367)
Q Consensus       198 ~~iv~~LL~~~~d~~-----~~~~~~~~~--~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g--~~~vv~~LL~  266 (367)
                      .+++++|++.|++.+     ...+++.+.  ..++.+++++|++.|+++.  +. .|.||||+|+..+  +.+++++|++
T Consensus        97 ~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~-~g~tpL~~a~~~~~~~~~iv~~Ll~  175 (471)
T PHA03095         97 LDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL-YGMTPLAVLLKSRNANVELLRLLID  175 (471)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999998642     334455444  4568899999999997776  55 8999999999876  6899999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHhcC
Q psy4222         267 CAKIQTSVRNKEGKTPLDSSSGL  289 (367)
Q Consensus       267 ~g~ad~~~~n~~G~TPL~iA~~~  289 (367)
                      +| ++++..|..|+||||+|+..
T Consensus       176 ~g-~~~~~~d~~g~t~Lh~~~~~  197 (471)
T PHA03095        176 AG-ADVYAVDDRFRSLLHHHLQS  197 (471)
T ss_pred             cC-CCCcccCCCCCCHHHHHHHH
Confidence            99 99999999999999999854

>KOG0508|consensus

Probab=99.74  E-value=2.6e-18  Score=164.14  Aligned_cols=142  Identities=15%  Similarity=0.106  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHh-cCCCcccc-------CCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVS-SGDFPTIL-------HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-  213 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~-~g~~~~~~-------~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-  213 (367)
                      +-|||..||++|+.+.|        +||++ .++++...       ...+|-+||-.|+..||.+||+.|+.++++.+. 
T Consensus        42 g~tPL~iaaRnGH~~vV--------eyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~t  113 (615)
T KOG0508|consen   42 GGTPLLIAARNGHADVV--------EYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDT  113 (615)
T ss_pred             CCCceeeehhcCcHHHH--------HHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccc
Confidence            34899999999999999        77776 34444211       123477888888889999999999999886332 


Q ss_pred             ----cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHh
Q psy4222         214 ----TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS  287 (367)
Q Consensus       214 ----~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~  287 (367)
                          ...+.+++-.|+++++++|+++|+|..  ++ .|.|.||+||..||.+|+++|++.| ||+|.++..|+|+||.|+
T Consensus       114 T~TNStPLraACfDG~leivKyLvE~gad~~Ianr-hGhTcLmIa~ykGh~~I~qyLle~g-ADvn~ks~kGNTALH~ca  191 (615)
T KOG0508|consen  114 TRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANR-HGHTCLMIACYKGHVDIAQYLLEQG-ADVNAKSYKGNTALHDCA  191 (615)
T ss_pred             cccCCccHHHHHhcchhHHHHHHHHcCCCCccccc-CCCeeEEeeeccCchHHHHHHHHhC-CCcchhcccCchHHHhhh
Confidence                245667788899999999999886665  66 8999999999999999999999999 899999999999999999


Q ss_pred             cCCcHHH
Q psy4222         288 GLDLLEN  294 (367)
Q Consensus       288 ~~g~~~~  294 (367)
                      +.|+++.
T Consensus       192 EsG~vdi  198 (615)
T KOG0508|consen  192 ESGSVDI  198 (615)
T ss_pred             hcccHHH
Confidence            9998874

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.73  E-value=7e-18  Score=144.70  Aligned_cols=125  Identities=15%  Similarity=0.172  Sum_probs=92.3

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHH---HHHHHHhhcCCCCCcc
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPA---MTEMLLEIIGNPAFTN  215 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~---iv~~LL~~~~d~~~~~  215 (367)
                      ++..+.|+||+||..|+...+....    ..+...........|..|+||||+|+..|+.+   ++++|++.|++     
T Consensus        13 ~d~~g~tpLh~A~~~g~~~~l~~~~----~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-----   83 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVTDLLAFK----NAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-----   83 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHH----HHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-----
Confidence            4566789999999999853331110    00000000001234778999999999999874   57788877765     


Q ss_pred             cccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         216 LLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~-g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                                           ++..+...|+||||+|+..|+.+++++|+.. | ++++.+|..|+||||+|+..++.+.
T Consensus        84 ---------------------in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g-~d~n~~~~~g~tpL~~A~~~~~~~i  141 (154)
T PHA02736         84 ---------------------INGKERVFGNTPLHIAVYTQNYELATWLCNQPG-VNMEILNYAFKTPYYVACERHDAKM  141 (154)
T ss_pred             ---------------------ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCC-CCCccccCCCCCHHHHHHHcCCHHH
Confidence                                 4555422799999999999999999999985 6 9999999999999999999887663

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.73  E-value=3.4e-17  Score=172.46  Aligned_cols=140  Identities=21%  Similarity=0.186  Sum_probs=85.9

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-ccccc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-TNLLY  218 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-~~~~~  218 (367)
                      +..+.||||.||+.|+.+.|        ++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+.+... ...++
T Consensus       175 d~~G~TpLh~Aa~~G~~~iv--------~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~  245 (682)
T PHA02876        175 DIYCITPIHYAAERGNAKMV--------NLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLL  245 (682)
T ss_pred             CCCCCCHHHHHHHCCCHHHH--------HHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHH
Confidence            44556777777777777777        7777777776 45666777777777777777777777766543211 11122


Q ss_pred             ccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCH-HHHHHHHhCCCCCCCCCCCCCChHHHHHhcCC
Q psy4222         219 DSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSV-ECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD  290 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~-~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g  290 (367)
                      .+...+..+++++|++.|++++  +. .|+||||+||..|+. +++++|++.| ++++.+|..|+||||+|+..|
T Consensus       246 ~ai~~~~~~~~~~Ll~~g~~vn~~d~-~g~TpLh~Aa~~~~~~~iv~lLl~~g-adin~~d~~g~TpLh~Aa~~g  318 (682)
T PHA02876        246 KAIRNEDLETSLLLYDAGFSVNSIDD-CKNTPLHHASQAPSLSRLVPKLLERG-ADVNAKNIKGETPLYLMAKNG  318 (682)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHhCCCHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhC
Confidence            2233444555555555554443  33 566666666666654 4666666666 666666666666666666555

>PHA02917 ankyrin-like protein; Provisional

Probab=99.73  E-value=6.1e-17  Score=168.57  Aligned_cols=139  Identities=15%  Similarity=0.112  Sum_probs=113.4

Q ss_pred             CChhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHH----HHHHHHhhcCC-
Q psy4222         139 LKSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPA----MTEMLLEIIGN-  210 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~----iv~~LL~~~~d-  210 (367)
                      .+..+.|+||+|+..   |+.+.|        ++|++.|+++ +.++..|+||||+|+..|+.+    ++++|++.++. 
T Consensus        28 ~d~~g~t~Lh~a~~~~~~~~~~~v--------~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~   98 (661)
T PHA02917         28 RNQFKNNALHAYLFNEHCNNVEVV--------KLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS   98 (661)
T ss_pred             cCCCCCcHHHHHHHhhhcCcHHHH--------HHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC
Confidence            345667999998665   889999        9999999999 588999999999999999954    56788876442 


Q ss_pred             --CCCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHH--HHcCCHHHHHHHHhCCCCCCCCCCC---CC--
Q psy4222         211 --PAFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFA--AKFGSVECVKRLIGCAKIQTSVRNK---EG--  279 (367)
Q Consensus       211 --~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~A--a~~g~~~vv~~LL~~g~ad~~~~n~---~G--  279 (367)
                        .+...+++.++..++.+++++|++.|++++  |. .|+||||+|  +..|+.++|++|+++| |+++.+|.   .|  
T Consensus        99 n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~-~g~T~L~~~~a~~~~~~eivklLi~~G-a~vn~~d~~~~~g~~  176 (661)
T PHA02917         99 NINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCE-NHRSVIENYVMTDDPVPEIIDLFIENG-CSVLYEDEDDEYGYA  176 (661)
T ss_pred             CCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCC-CCccHHHHHHHccCCCHHHHHHHHHcC-CCccccccccccccc
Confidence              223345566788899999999999998777  45 899999965  4578999999999999 99987654   34  


Q ss_pred             ---------ChHHHHHhc
Q psy4222         280 ---------KTPLDSSSG  288 (367)
Q Consensus       280 ---------~TPL~iA~~  288 (367)
                               .||||+|+.
T Consensus       177 ~~~~~~~~~~t~L~~a~~  194 (661)
T PHA02917        177 YDDYQPRNCGTVLHLYII  194 (661)
T ss_pred             cccccccccccHHHHHHh
Confidence                     599999985

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.73  E-value=3.4e-17  Score=170.50  Aligned_cols=141  Identities=14%  Similarity=0.092  Sum_probs=116.1

Q ss_pred             CCCCCCChhhHHHHHHHHHcCC--HHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHH-------------------
Q psy4222         134 SPFKSLKSQELVKLRKLIEKGN--LADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVS-------------------  192 (367)
Q Consensus       134 ~~f~~~~~~~lt~L~~A~~~G~--~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~A-------------------  192 (367)
                      .+....+..+.||||.|++.|+  .+.|        ++|++.|+++ +.++..|+||||+|                   
T Consensus       203 ADVN~kD~~G~TPLH~Aa~~g~~~~eIV--------klLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~  273 (764)
T PHA02716        203 VNVNLQNNHLITPLHTYLITGNVCASVI--------KKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESL  273 (764)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhc
Confidence            3445556778899999999995  4788        9999999998 68899999999975                   


Q ss_pred             ------------------HHcCCHHHHHHHHhhcCCC-----CCccccccc--CCCChHHHHHHHHhcCCCCC--CCCCC
Q psy4222         193 ------------------TKAVNPAMTEMLLEIIGNP-----AFTNLLYDS--DTPSYIERSDILLDLYVNTP--DKALN  245 (367)
Q Consensus       193 ------------------a~~g~~~iv~~LL~~~~d~-----~~~~~~~~~--~~~~~~~~v~~Ll~~~~n~~--d~~~g  245 (367)
                                        ++.|+.+++++|++.|++.     ....++|.+  ...++.+++++|++.|+++.  |. .|
T Consensus       274 d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~-~G  352 (764)
T PHA02716        274 DGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDN-IG  352 (764)
T ss_pred             cccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCC-CC
Confidence                              4457889999999998853     334445443  34568899999999997765  56 89


Q ss_pred             CcHHHHHHH--------------cCCHHHHHHHHhCCCCCCCCCCCCCChHHHH
Q psy4222         246 ETPLHFAAK--------------FGSVECVKRLIGCAKIQTSVRNKEGKTPLDS  285 (367)
Q Consensus       246 ~TpLH~Aa~--------------~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~i  285 (367)
                      +||||+|+.              .|+.++|++|+++| ++++.+|..|+||||.
T Consensus       353 ~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G-ADIn~kn~~G~TPLh~  405 (764)
T PHA02716        353 NTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG-ADITAVNCLGYTPLTS  405 (764)
T ss_pred             CCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC-CCCCCcCCCCCChHHH
Confidence            999999875              37899999999999 9999999999999994

>KOG0508|consensus

Probab=99.72  E-value=2.4e-17  Score=157.60  Aligned_cols=150  Identities=19%  Similarity=0.151  Sum_probs=125.8

Q ss_pred             CCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC
Q psy4222         134 SPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF  213 (367)
Q Consensus       134 ~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~  213 (367)
                      ..|-.-.-++-.||..|+..|++++|        +.|+..|++. +.......|||--||.-|+.+|+++|+++++|+..
T Consensus        75 V~FDge~IegappLWaAsaAGHl~vV--------k~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~gad~~I  145 (615)
T KOG0508|consen   75 VRFDGETIEGAPPLWAASAAGHLEVV--------KLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEI  145 (615)
T ss_pred             EEeCCcccCCCchhhHHhccCcHHHH--------HHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHcCCCCcc
Confidence            34444455666789999999999999        8999999777 34444566999999999999999999999998654


Q ss_pred             -----cccccccCCCChHHHHHHHHhcCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHh
Q psy4222         214 -----TNLLYDSDTPSYIERSDILLDLYVNTPDK-ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS  287 (367)
Q Consensus       214 -----~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~-~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~  287 (367)
                           ...++-++..|+.+++++|++.|++++.+ ..|+|+||.|+..|+++++++|+.+| +-++ +|.+|.|||..|+
T Consensus       146 anrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~g-a~i~-~d~~GmtPL~~Aa  223 (615)
T KOG0508|consen  146 ANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHG-AKID-VDGHGMTPLLLAA  223 (615)
T ss_pred             cccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCC-ceee-ecCCCCchHHHHh
Confidence                 44556668899999999999999888843 38999999999999999999999999 6665 5677999999999


Q ss_pred             cCCcHHH
Q psy4222         288 GLDLLEN  294 (367)
Q Consensus       288 ~~g~~~~  294 (367)
                      ..|+.+.
T Consensus       224 ~tG~~~i  230 (615)
T KOG0508|consen  224 VTGHTDI  230 (615)
T ss_pred             hhcchHH
Confidence            8887653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=5e-17  Score=126.05  Aligned_cols=89  Identities=31%  Similarity=0.441  Sum_probs=77.3

Q ss_pred             HHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChH
Q psy4222         147 LRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYI  226 (367)
Q Consensus       147 L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~  226 (367)
                      ||.||+.|+++.+        ++|++.+.+..    . |.||||+|+..|+.+++++|++.+++                
T Consensus         1 L~~A~~~~~~~~~--------~~ll~~~~~~~----~-~~~~l~~A~~~~~~~~~~~Ll~~g~~----------------   51 (89)
T PF12796_consen    1 LHIAAQNGNLEIL--------KFLLEKGADIN----L-GNTALHYAAENGNLEIVKLLLENGAD----------------   51 (89)
T ss_dssp             HHHHHHTTTHHHH--------HHHHHTTSTTT----S-SSBHHHHHHHTTTHHHHHHHHHTTTC----------------
T ss_pred             CHHHHHcCCHHHH--------HHHHHCcCCCC----C-CCCHHHHHHHcCCHHHHHHHHHhccc----------------
Confidence            7999999999999        88888886662    2 88999999999999999999998876                


Q ss_pred             HHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q psy4222         227 ERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN  276 (367)
Q Consensus       227 ~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n  276 (367)
                                ++..+. .|+||||+|+.+|+.+++++|+++| ++++.+|
T Consensus        52 ----------~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~n   89 (89)
T PF12796_consen   52 ----------INSQDK-NGNTALHYAAENGNLEIVKLLLEHG-ADVNIRN   89 (89)
T ss_dssp             ----------TT-BST-TSSBHHHHHHHTTHHHHHHHHHHTT-T-TTSS-
T ss_pred             ----------ccccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcC
Confidence                      444555 8999999999999999999999999 9999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0505|consensus

Probab=99.71  E-value=1.5e-17  Score=161.66  Aligned_cols=139  Identities=24%  Similarity=0.294  Sum_probs=116.9

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCC--------
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN--------  210 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d--------  210 (367)
                      .+.+++|+||.++...+.++|        +||++.|++. +.+|..||||||.|+..|+..|+++|+.+|++        
T Consensus        69 ~n~DglTalhq~~id~~~e~v--------~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg  139 (527)
T KOG0505|consen   69 CNVDGLTALHQACIDDNLEMV--------KFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDG  139 (527)
T ss_pred             cCCccchhHHHHHhcccHHHH--------HHHHHhcCCc-cccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCC
Confidence            446788999999999999999        9999999999 68899999999999999999999999999762        


Q ss_pred             --------------------------------------------------------CCCcccccccCCCChHHHHHHHHh
Q psy4222         211 --------------------------------------------------------PAFTNLLYDSDTPSYIERSDILLD  234 (367)
Q Consensus       211 --------------------------------------------------------~~~~~~~~~~~~~~~~~~v~~Ll~  234 (367)
                                                                              ...-.++|.++..|+.++.++|+.
T Consensus       140 ~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~  219 (527)
T KOG0505|consen  140 NMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQ  219 (527)
T ss_pred             CCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHH
Confidence                                                                    011223333445788889999998


Q ss_pred             cCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222         235 LYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG  288 (367)
Q Consensus       235 ~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~  288 (367)
                      +|.++.  |. .||||||.||.+|+.+++++|+++| ++++.+++.|+||+++|..
T Consensus       220 ag~~~~~~D~-dgWtPlHAAA~Wg~~~~~elL~~~g-a~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  220 AGYSVNIKDY-DGWTPLHAAAHWGQEDACELLVEHG-ADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             hccCcccccc-cCCCcccHHHHhhhHhHHHHHHHhh-cccchhhhcCCCCccchhh
Confidence            875554  55 8999999999999999999999998 8999999999999998874

>PHA02798 ankyrin-like protein; Provisional

Probab=99.71  E-value=1.2e-16  Score=161.92  Aligned_cols=159  Identities=14%  Similarity=0.069  Sum_probs=123.8

Q ss_pred             hhhhhcccCCCCCCCCChhhHHHHHHHHHc-----CCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcC--
Q psy4222         124 MSSLAAAEKPSPFKSLKSQELVKLRKLIEK-----GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV--  196 (367)
Q Consensus       124 ~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~-----G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g--  196 (367)
                      +..++..+.  +....+..+.||||.|+..     +..+.+        ++|++.|+++ +.++..|+||||+|+..+  
T Consensus        54 v~~Ll~~Ga--dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv--------~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~  122 (489)
T PHA02798         54 VKLFINLGA--NVNGLDNEYSTPLCTILSNIKDYKHMLDIV--------KILIENGADI-NKKNSDGETPLYCLLSNGYI  122 (489)
T ss_pred             HHHHHHCCC--CCCCCCCCCCChHHHHHHhHHhHHhHHHHH--------HHHHHCCCCC-CCCCCCcCcHHHHHHHcCCc
Confidence            333444444  4444557778999998864     567777        9999999998 688999999999999975  


Q ss_pred             -CHHHHHHHHhhcCCC-----CCcccccccCCCCh---HHHHHHHHhcCCCCCC--CCCCCcHHHHHHHc----CCHHHH
Q psy4222         197 -NPAMTEMLLEIIGNP-----AFTNLLYDSDTPSY---IERSDILLDLYVNTPD--KALNETPLHFAAKF----GSVECV  261 (367)
Q Consensus       197 -~~~iv~~LL~~~~d~-----~~~~~~~~~~~~~~---~~~v~~Ll~~~~n~~d--~~~g~TpLH~Aa~~----g~~~vv  261 (367)
                       +.+++++|++.|++.     ....+++.+...++   .+++++|++.|+++..  ...|.||||.++..    ++.+++
T Consensus       123 ~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~iv  202 (489)
T PHA02798        123 NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADIL  202 (489)
T ss_pred             ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHH
Confidence             789999999999874     33445555554454   8999999999988763  22689999999875    478999


Q ss_pred             HHHHhCCCC---------------------------------------CCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         262 KRLIGCAKI---------------------------------------QTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       262 ~~LL~~g~a---------------------------------------d~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++|+++| +                                       |+|.+|..|+||||+|+..++.+.
T Consensus       203 k~Li~~G-a~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~  273 (489)
T PHA02798        203 KLFVDNG-FIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKI  273 (489)
T ss_pred             HHHHHCC-CCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHH
Confidence            9999887 4                                       455678889999999999887764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.70  E-value=2e-16  Score=160.63  Aligned_cols=189  Identities=16%  Similarity=0.034  Sum_probs=131.5

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC-CCcchhhhhhcccCCCCCCCCChhhHHHHHHHHHcCC------
Q psy4222          83 RNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADP-SALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIEKGN------  155 (367)
Q Consensus        83 ~~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~------  155 (367)
                      ...+-++.+.+.|.+++..   ..+.++........ +..+.+..++..+...+.+.   ...||||.|+..+.      
T Consensus        14 ~~~~~v~~LL~~GadvN~~---~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~---~~~tpL~~a~~~~~~~~~~~   87 (494)
T PHA02989         14 VDKNALEFLLRTGFDVNEE---YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG---YIETPLCAVLRNREITSNKI   87 (494)
T ss_pred             CcHHHHHHHHHcCCCcccc---cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC---CCCCcHHHHHhccCcchhhH
Confidence            4566677888888876643   22333322222211 22344444555555544443   23689999987654      


Q ss_pred             HHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHc---CCHHHHHHHHhhcCCC-C-----Cccccccc--CCCC
Q psy4222         156 LADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKA---VNPAMTEMLLEIIGNP-A-----FTNLLYDS--DTPS  224 (367)
Q Consensus       156 ~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~---g~~~iv~~LL~~~~d~-~-----~~~~~~~~--~~~~  224 (367)
                      .+.+        ++|++.|+++ +.++..|+||||.|+..   |+.+++++|+++|+|. .     ...+++.+  ...+
T Consensus        88 ~~iv--------~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~  158 (494)
T PHA02989         88 KKIV--------KLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSV  158 (494)
T ss_pred             HHHH--------HHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccC
Confidence            4556        9999999998 68899999999988765   6899999999999986 2     23444433  3457


Q ss_pred             hHHHHHHHHhcCCCCCC--CCCCCcHHHHHHHcC----CHHHHHHHHhCCCCCCCCCCCCCChHHHHHh
Q psy4222         225 YIERSDILLDLYVNTPD--KALNETPLHFAAKFG----SVECVKRLIGCAKIQTSVRNKEGKTPLDSSS  287 (367)
Q Consensus       225 ~~~~v~~Ll~~~~n~~d--~~~g~TpLH~Aa~~g----~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~  287 (367)
                      +.+++++|++.|+++..  ...|.||||+|+..+    +.++|++|+++| ++++.+|..|.||||.++
T Consensus       159 ~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~G-a~vn~~~~~~~t~l~~~~  226 (494)
T PHA02989        159 KKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKG-VNIETNNNGSESVLESFL  226 (494)
T ss_pred             CHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCC-CCccccCCccccHHHHHH
Confidence            89999999999988764  237999999998765    899999999999 777766654455554443

>KOG0514|consensus

Probab=99.69  E-value=8.5e-17  Score=149.61  Aligned_cols=142  Identities=20%  Similarity=0.194  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHc-----CCHHHHHHHHhhcC-----CCC
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKA-----VNPAMTEMLLEIIG-----NPA  212 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~-----g~~~iv~~LL~~~~-----d~~  212 (367)
                      +-|+||+|+..+|+++|        ..|++.|.-..+.+++-||||+++|+..     .+.++|+.|...|.     ...
T Consensus       268 GNTALHYsVSHaNF~VV--------~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~  339 (452)
T KOG0514|consen  268 GNTALHYAVSHANFDVV--------SILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQH  339 (452)
T ss_pred             CCeeeeeeecccchHHH--------HHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhh
Confidence            44667777777777777        6666666444355666677777776642     34556666665542     123


Q ss_pred             CcccccccCCCChHHHHHHHHhcCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCC
Q psy4222         213 FTNLLYDSDTPSYIERSDILLDLYV--NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD  290 (367)
Q Consensus       213 ~~~~~~~~~~~~~~~~v~~Ll~~~~--n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g  290 (367)
                      ...++.-+..+|+.++++.||..|+  |++|. +|.|+|+.||.+||+|||++||..+.||+...|.+|-|+|.+|...|
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDd-DGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDD-DGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccC-CccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence            3444555566777777777776653  33455 67777777777777777777777766777777777777777777766


Q ss_pred             cHH
Q psy4222         291 LLE  293 (367)
Q Consensus       291 ~~~  293 (367)
                      |-+
T Consensus       419 h~e  421 (452)
T KOG0514|consen  419 HRE  421 (452)
T ss_pred             chH
Confidence            655

>PHA02795 ankyrin-like protein; Provisional

Probab=99.68  E-value=4.3e-16  Score=152.79  Aligned_cols=166  Identities=10%  Similarity=-0.027  Sum_probs=132.3

Q ss_pred             HHHHcCCHHHHHHHHhcCChhHHhcCCCccc-----cCCCCCCcHHHHHHH--cCCHHHHHHHHhhcCCCCC---ccccc
Q psy4222         149 KLIEKGNLADVRKLVWDNPRYLVSSGDFPTI-----LHEGCRYNALHVSTK--AVNPAMTEMLLEIIGNPAF---TNLLY  218 (367)
Q Consensus       149 ~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~-----~~d~~G~TpLh~Aa~--~g~~~iv~~LL~~~~d~~~---~~~~~  218 (367)
                      .|+..+..+.+        ++|+++|+++..     .++..++|+||+|+.  .|+.+++++|+++|++...   ..+++
T Consensus        83 ~~~~~~~k~~~--------~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh  154 (437)
T PHA02795         83 LFAYITYKDII--------SALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYF  154 (437)
T ss_pred             HHhhcchHHHH--------HHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHH
Confidence            88999999999        999999998740     356779999999999  8999999999999999643   45677


Q ss_pred             ccCCCChHHHHHHHHhcCCCCCCC-------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         219 DSDTPSYIERSDILLDLYVNTPDK-------ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~d~-------~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      .++..++.+++++|+.+|++....       ..+.|++|.|+..++.+++++|+++| |+++.+|..|.||||+|+..|+
T Consensus       155 ~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-ADIN~kD~~G~TpLh~Aa~~g~  233 (437)
T PHA02795        155 RGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-EDINQLDAGGRTLLYRAIYAGY  233 (437)
T ss_pred             HHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-CCcCcCCCCCCCHHHHHHHcCC
Confidence            778889999999999999743321       14789999999999999999999999 9999999999999999999998


Q ss_pred             HHHHHhhhchHHHHhccCCCCCCCCCCCCccccchHHHhccCC
Q psy4222         292 LENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVNF  334 (367)
Q Consensus       292 ~~~ll~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~  334 (367)
                      .+.+-     .++..      |..++.......+|++.++.+.
T Consensus       234 ~eiVe-----lLL~~------GAdIN~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        234 IDLVS-----WLLEN------GANVNAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             HHHHH-----HHHHC------CCCCCCcCCCCCCHHHHHHHcC
Confidence            87431     12221      2223333445667777665443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.68  E-value=3.9e-16  Score=162.56  Aligned_cols=148  Identities=16%  Similarity=0.130  Sum_probs=116.6

Q ss_pred             CCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC----
Q psy4222         138 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF----  213 (367)
Q Consensus       138 ~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~----  213 (367)
                      ..+..+.||||+|+..|+.+.+++++    +.|++.+... +..+  ..+++|+|+..|+.+++++|+++|++.+.    
T Consensus        63 ~~~~~g~TpL~~Aa~~g~~~v~~~~~----~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~  135 (661)
T PHA02917         63 HKNWRQLTPLEEYTNSRHVKVNKDIA----MALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCEN  135 (661)
T ss_pred             ccCCCCCCHHHHHHHcCChhHHHHHH----HHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCC
Confidence            34466789999999999988887777    7888765332 2323  23677889999999999999999987543    


Q ss_pred             -ccccc--ccCCCChHHHHHHHHhcCCCCC--CC--CCC-----------CcHHHHHHH-----------cCCHHHHHHH
Q psy4222         214 -TNLLY--DSDTPSYIERSDILLDLYVNTP--DK--ALN-----------ETPLHFAAK-----------FGSVECVKRL  264 (367)
Q Consensus       214 -~~~~~--~~~~~~~~~~v~~Ll~~~~n~~--d~--~~g-----------~TpLH~Aa~-----------~g~~~vv~~L  264 (367)
                       ..+++  .+...++.+++++|+++|++++  |.  ..|           .||||+|+.           +|+.++|++|
T Consensus       136 g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~L  215 (661)
T PHA02917        136 HRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCL  215 (661)
T ss_pred             CccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHH
Confidence             33443  3456789999999999998875  21  123           599999986           5689999999


Q ss_pred             HhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         265 IGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       265 L~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      +++| ++++.+|.+|.||||+|+..|+.+
T Consensus       216 i~~G-advn~~d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        216 INHG-IKPSSIDKNYCTALQYYIKSSHID  243 (661)
T ss_pred             HHCC-CCcccCCCCCCcHHHHHHHcCCCc
Confidence            9999 999999999999999999988764

>KOG0512|consensus

Probab=99.68  E-value=2e-16  Score=133.50  Aligned_cols=194  Identities=19%  Similarity=0.177  Sum_probs=138.3

Q ss_pred             ccccHHHHHHHHHHcccccccCCCC--HHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCcchhhhhhcccCCCCCC
Q psy4222          60 VFDNKEEALLFIKKNKKIRFKSFRN--FQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFK  137 (367)
Q Consensus        60 vy~~~~~~~~~~k~~k~ar~k~F~~--~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~  137 (367)
                      =|.+-++.+..+..|++...--|.+  .++++.+-+..-  +    .+....-.-+.+... ..-+....+-.+.+.-..
T Consensus        19 d~~d~k~q~e~lr~h~~~~pgmfvS~W~ddsdeleE~dk--~----me~dp~rl~lwaae~-nrl~eV~~lL~e~an~vN   91 (228)
T KOG0512|consen   19 DFSDHKNQLEELRTHGHLIPGMFVSLWVDDSEELEEQDK--N----MEKDPIRLLLWAAEK-NRLTEVQRLLSEKANHVN   91 (228)
T ss_pred             chHHHHHHHHHHHhcCcCCCcceeeeecCCcHHHHhhcc--C----cccCHHHHHHHHHhh-ccHHHHHHHHHhcccccc
Confidence            3556777778888888888888844  233333333210  0    000000000010000 011122346677888888


Q ss_pred             CCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccc
Q psy4222         138 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL  217 (367)
Q Consensus       138 ~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~  217 (367)
                      +.+.++.|+||.|+++|++++|        ..|+..|+++ ..+...||||||-||+.++.+++.+||++|+|       
T Consensus        92 trD~D~YTpLHRAaYn~h~div--------~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~va~~LLqhgaD-------  155 (228)
T KOG0512|consen   92 TRDEDEYTPLHRAAYNGHLDIV--------HELLLSGANK-EAKTNEGWTPLHSACKWNNFEVAGRLLQHGAD-------  155 (228)
T ss_pred             ccccccccHHHHHHhcCchHHH--------HHHHHccCCc-ccccccCccchhhhhcccchhHHHHHHhccCc-------
Confidence            8899999999999999999999        8888889999 57788899999999999999999999999987       


Q ss_pred             cccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHHH
Q psy4222         218 YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS-VECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYL  296 (367)
Q Consensus       218 ~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~-~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ll  296 (367)
                                         +|...+ ..+||||+||...+ ...+++|+.....++-.++..+.||+++|-+.+....++
T Consensus       156 -------------------VnA~t~-g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lf  215 (228)
T KOG0512|consen  156 -------------------VNAQTK-GLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLF  215 (228)
T ss_pred             -------------------cccccc-ccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHH
Confidence                               555555 67999999998865 455677766555888999999999999998876555443

>KOG0195|consensus

Probab=99.66  E-value=1.6e-16  Score=143.82  Aligned_cols=107  Identities=27%  Similarity=0.349  Sum_probs=70.3

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCcccccccCCCChHHHHHHHHhcC--CCCCCCCCCCcHHHH
Q psy4222         179 ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNLLYDSDTPSYIERSDILLDLY--VNTPDKALNETPLHF  251 (367)
Q Consensus       179 ~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~~~~~~~~~~~~~v~~Ll~~~--~n~~d~~~g~TpLH~  251 (367)
                      +.-|..|.+||||||+.||..+++.||..|+..     +-...+|-++..|+.++++.|+...  +|..+. .|+|||||
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavne-hgntplhy  106 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNE-HGNTPLHY  106 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhc-cCCCchhh
Confidence            333444445555555555555555554444321     1122233344444444444444433  555567 89999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHh
Q psy4222         252 AAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS  287 (367)
Q Consensus       252 Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~  287 (367)
                      ||.+|.-.+++-|+..| |.+++.|++|.|||+.|.
T Consensus       107 acfwgydqiaedli~~g-a~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  107 ACFWGYDQIAEDLISCG-AAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhhhcHHHHHHHHHhcc-ceeeecccCCCCchhhhc
Confidence            99999999999999999 999999999999999875

>KOG0514|consensus

Probab=99.66  E-value=1.1e-16  Score=148.87  Aligned_cols=116  Identities=22%  Similarity=0.315  Sum_probs=97.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC-C------CCCccccccc----CCCChHHHHHHHHhcC-CCCCCCCCCC
Q psy4222         179 ILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-N------PAFTNLLYDS----DTPSYIERSDILLDLY-VNTPDKALNE  246 (367)
Q Consensus       179 ~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~-d------~~~~~~~~~~----~~~~~~~~v~~Ll~~~-~n~~d~~~g~  246 (367)
                      ++.|.+|.|+||||+..+++++|+.||+.+. +      -+..+.|..+    ......++|+-|...| +|......|+
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQ  341 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQ  341 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcc
Confidence            5669999999999999999999999999874 1      2233333333    3456777888888775 8887655899


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHH
Q psy4222         247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENY  295 (367)
Q Consensus       247 TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~l  295 (367)
                      |+|++|+.+|++++|+.||..| ||+|++|.+|-|+|++||++||.+-.
T Consensus       342 TALMLAVSHGr~d~vk~LLacg-AdVNiQDdDGSTALMCA~EHGhkEiv  389 (452)
T KOG0514|consen  342 TALMLAVSHGRVDMVKALLACG-ADVNIQDDDGSTALMCAAEHGHKEIV  389 (452)
T ss_pred             hhhhhhhhcCcHHHHHHHHHcc-CCCccccCCccHHHhhhhhhChHHHH
Confidence            9999999999999999999999 99999999999999999999999854

>KOG4177|consensus

Probab=99.65  E-value=2.3e-16  Score=167.78  Aligned_cols=148  Identities=23%  Similarity=0.231  Sum_probs=105.6

Q ss_pred             CCCCCChhhHHHHHHHHHcC-CHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC----
Q psy4222         135 PFKSLKSQELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG----  209 (367)
Q Consensus       135 ~f~~~~~~~lt~L~~A~~~G-~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~----  209 (367)
                      .+......++|++|.|+..| ..+..        ..++..|.++ +..-..|.||||+|+..|+.++++.|++.++    
T Consensus       432 ~~~~~~~lG~T~lhvaa~~g~~~~~~--------~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~  502 (1143)
T KOG4177|consen  432 SPNAKAKLGYTPLHVAAKKGRYLQIA--------RLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNL  502 (1143)
T ss_pred             ChhhHhhcCCChhhhhhhcccHhhhh--------hhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCccCc
Confidence            44444455667777777777 55555        5555666666 4556667777777777777777777777552    


Q ss_pred             -----------------------------C-----CCCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHH
Q psy4222         210 -----------------------------N-----PAFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAA  253 (367)
Q Consensus       210 -----------------------------d-----~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa  253 (367)
                                                   +     .....++|.++..|++.+|++|+++|+++.  ++ .|+||||.||
T Consensus       503 ~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~-~G~TPLH~Aa  581 (1143)
T KOG4177|consen  503 DAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDK-LGYTPLHQAA  581 (1143)
T ss_pred             cchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCC-CCCChhhHHH
Confidence                                         1     112334555666788888888888876665  54 7888888888


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         254 KFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       254 ~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      ..|+.+|+++|+++| |++|..|.+|.|||++|++.|+++
T Consensus       582 ~~G~~~i~~LLlk~G-A~vna~d~~g~TpL~iA~~lg~~~  620 (1143)
T KOG4177|consen  582 QQGHNDIAELLLKHG-ASVNAADLDGFTPLHIAVRLGYLS  620 (1143)
T ss_pred             HcChHHHHHHHHHcC-CCCCcccccCcchhHHHHHhcccc
Confidence            888888888888888 888888888888888888777665

>KOG4177|consensus

Probab=99.65  E-value=2.3e-16  Score=167.76  Aligned_cols=146  Identities=24%  Similarity=0.290  Sum_probs=120.9

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcC-CHHHHHHHHhhcCCCC-----
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV-NPAMTEMLLEIIGNPA-----  212 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g-~~~iv~~LL~~~~d~~-----  212 (367)
                      ....++|+||.|+..++...|        +.++..|+++ +..+..|+|++|+|+..| ..+++..+++.+++++     
T Consensus       403 ~gk~gvTplh~aa~~~~~~~v--------~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~  473 (1143)
T KOG4177|consen  403 AGKNGVTPLHVAAHYGNPRVV--------KLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQ  473 (1143)
T ss_pred             CCCCCcceeeehhhccCcceE--------EEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccc
Confidence            346679999999999999999        9999999999 688999999999999999 8899999999987632     


Q ss_pred             CcccccccCC---------------------------------CChHHHHHHHHhcCCCCCCC-CCCCcHHHHHHHcCCH
Q psy4222         213 FTNLLYDSDT---------------------------------PSYIERSDILLDLYVNTPDK-ALNETPLHFAAKFGSV  258 (367)
Q Consensus       213 ~~~~~~~~~~---------------------------------~~~~~~v~~Ll~~~~n~~d~-~~g~TpLH~Aa~~g~~  258 (367)
                      ....++-++.                                 .+...+++.+++.|+++... ..|.||||+||.+|+.
T Consensus       474 G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v  553 (1143)
T KOG4177|consen  474 GFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNV  553 (1143)
T ss_pred             cCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCc
Confidence            2222232322                                 34455666677777776643 2788999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         259 ECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       259 ~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++|++||++| +|++.+++.|+||||.||..|+.+.
T Consensus       554 ~~VkfLLe~g-Adv~ak~~~G~TPLH~Aa~~G~~~i  588 (1143)
T KOG4177|consen  554 DLVKFLLEHG-ADVNAKDKLGYTPLHQAAQQGHNDI  588 (1143)
T ss_pred             hHHHHhhhCC-ccccccCCCCCChhhHHHHcChHHH
Confidence            9999999999 9999999999999999999997664

>PHA02730 ankyrin-like protein; Provisional

Probab=99.65  E-value=1.5e-15  Score=155.63  Aligned_cols=144  Identities=18%  Similarity=0.185  Sum_probs=109.9

Q ss_pred             CChhhHHHHHHHHHcC---CHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcC--CHHHHHHHHhhcCCC--
Q psy4222         139 LKSQELVKLRKLIEKG---NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV--NPAMTEMLLEIIGNP--  211 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G---~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g--~~~iv~~LL~~~~d~--  211 (367)
                      .+..+.|+||+|+..|   +.++|        ++|+++|+++ +.+|..|+||||+|+..+  +.+++++|++.|++.  
T Consensus        37 kd~~G~TaLh~A~~~~~~~~~eiv--------klLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~  107 (672)
T PHA02730         37 IDRRGNNALHCYVSNKCDTDIKIV--------RLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASN  107 (672)
T ss_pred             cCCCCCcHHHHHHHcCCcCcHHHH--------HHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCc
Confidence            3455779999999997   58999        9999999999 688999999999999976  799999999996521  


Q ss_pred             CC----------------------------------------------cccccccCCCChHHHHHHHHhcCCCCC-----
Q psy4222         212 AF----------------------------------------------TNLLYDSDTPSYIERSDILLDLYVNTP-----  240 (367)
Q Consensus       212 ~~----------------------------------------------~~~~~~~~~~~~~~~v~~Ll~~~~n~~-----  240 (367)
                      +.                                              ...+|.++..++.++|++|++.|+++.     
T Consensus       108 ~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~  187 (672)
T PHA02730        108 ELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFR  187 (672)
T ss_pred             ccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccc
Confidence            10                                              111222244677889999999987773     


Q ss_pred             ----CCCCCCcHHHHH------HHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHH--HhcCCcH
Q psy4222         241 ----DKALNETPLHFA------AKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDS--SSGLDLL  292 (367)
Q Consensus       241 ----d~~~g~TpLH~A------a~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~i--A~~~g~~  292 (367)
                          +.....|.||++      ...++.++|++|+++| |++|.+|.+|+||||+  |+..++.
T Consensus       188 ~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~G-adIN~kd~~G~TpLh~~~~~~~~~~  250 (672)
T PHA02730        188 SCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNN-VSIHGRDEGGSLPIQYYWSCSTIDI  250 (672)
T ss_pred             cccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCcccH
Confidence                121233455543      4557899999999999 9999999999999995  5455553

>KOG0195|consensus

Probab=99.62  E-value=2.5e-16  Score=142.57  Aligned_cols=80  Identities=21%  Similarity=0.239  Sum_probs=69.1

Q ss_pred             CCCcccccccCCCChHHHHHHHHhcCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcC
Q psy4222         211 PAFTNLLYDSDTPSYIERSDILLDLYVNTPDKA-LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGL  289 (367)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~-~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~  289 (367)
                      .....++|.++.+|+..+++.|+..|+.++..+ ...||||+||.+||.++|+.||++. +|+|+.|..|+||||+||-.
T Consensus        32 dhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~k-advnavnehgntplhyacfw  110 (448)
T KOG0195|consen   32 DHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRK-ADVNAVNEHGNTPLHYACFW  110 (448)
T ss_pred             ccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHh-cccchhhccCCCchhhhhhh
Confidence            334455788889999999999999996666322 5689999999999999999999998 99999999999999999977


Q ss_pred             Cc
Q psy4222         290 DL  291 (367)
Q Consensus       290 g~  291 (367)
                      |.
T Consensus       111 gy  112 (448)
T KOG0195|consen  111 GY  112 (448)
T ss_pred             cH
Confidence            64

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.61  E-value=3.6e-15  Score=129.66  Aligned_cols=107  Identities=18%  Similarity=0.097  Sum_probs=90.5

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCC-CCCCcHHHHHHHcCCHHHHHHHHh-hcCCCCCccccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHE-GCRYNALHVSTKAVNPAMTEMLLE-IIGNPAFTNLLY  218 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d-~~G~TpLh~Aa~~g~~~iv~~LL~-~~~d~~~~~~~~  218 (367)
                      ..+.|+||+|+..|..+.+ +++    ++|+..|+++ +.++ ..|+||||+|+..|+.+++++|+. .+++        
T Consensus        55 ~~g~t~Lh~Aa~~g~~~~~-~~i----~~Ll~~Gadi-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad--------  120 (166)
T PHA02743         55 HHGRQCTHMVAWYDRANAV-MKI----ELLVNMGADI-NARELGTGNTLLHIAASTKNYELAEWLCRQLGVN--------  120 (166)
T ss_pred             CCCCcHHHHHHHhCccCHH-HHH----HHHHHcCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC--------
Confidence            4457999999999986652 122    8999999988 5666 589999999999999999999995 5655        


Q ss_pred             ccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCh
Q psy4222         219 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKT  281 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~T  281 (367)
                                        ++..+. .|+||||+|+..|+.+++++|+++| ++++.++..|..
T Consensus       121 ------------------~~~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~  163 (166)
T PHA02743        121 ------------------LGAINY-QHETAYHIAYKMRDRRMMEILRANG-AVCDDPLSIGLS  163 (166)
T ss_pred             ------------------ccCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcccCCcc
Confidence                              555666 8999999999999999999999999 999999988753

>PHA02730 ankyrin-like protein; Provisional

Probab=99.60  E-value=8.9e-15  Score=150.05  Aligned_cols=132  Identities=19%  Similarity=0.190  Sum_probs=106.0

Q ss_pred             HHHHHHHcC---CHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCC----HHHHHHHHhhcCC-------C
Q psy4222         146 KLRKLIEKG---NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN----PAMTEMLLEIIGN-------P  211 (367)
Q Consensus       146 ~L~~A~~~G---~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~----~~iv~~LL~~~~d-------~  211 (367)
                      .||.-.+.|   +.+.+        ++|+++|++.. .. ..|+||||+|+..++    .+++++|+++|++       .
T Consensus       346 ~l~~Y~~~~~~v~ieIv--------elLIs~GAdIN-~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~  415 (672)
T PHA02730        346 MLINYLHYGDMVSIPIL--------RCMLDNGATMD-KT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSN  415 (672)
T ss_pred             HHHHHHhcCCcCcHHHH--------HHHHHCCCCCC-cC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccccccc
Confidence            577777766   47777        99999999984 43 789999999999875    8999999999873       2


Q ss_pred             CCcccccc---cCCC---------ChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q psy4222         212 AFTNLLYD---SDTP---------SYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK  277 (367)
Q Consensus       212 ~~~~~~~~---~~~~---------~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~  277 (367)
                      ....+++.   +...         ...+++++|+.+|++++  |. .|+||||+|+..++.+++++|+++| |+++.+|.
T Consensus       416 ~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~-~G~TPLh~Aa~~~~~eive~LI~~G-AdIN~~d~  493 (672)
T PHA02730        416 NGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDN-ENKTLLYYAVDVNNIQFARRLLEYG-ASVNTTSR  493 (672)
T ss_pred             CCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCC-CCCCHHHHHHHhCCHHHHHHHHHCC-CCCCCCCC
Confidence            23343432   1111         13467999999996665  66 8999999999999999999999999 99999997


Q ss_pred             -CCChHHHHHhcC
Q psy4222         278 -EGKTPLDSSSGL  289 (367)
Q Consensus       278 -~G~TPL~iA~~~  289 (367)
                       .|+||||+|+..
T Consensus       494 ~~g~TaL~~Aa~~  506 (672)
T PHA02730        494 SIINTAIQKSSYR  506 (672)
T ss_pred             cCCcCHHHHHHHh
Confidence             599999999863

>KOG4214|consensus

Probab=99.58  E-value=6.2e-15  Score=112.05  Aligned_cols=111  Identities=20%  Similarity=0.271  Sum_probs=90.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCCh
Q psy4222         146 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSY  225 (367)
Q Consensus       146 ~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~  225 (367)
                      .+.|++++|.++.|++.        +..|.+.. . -..|++||||||-+|+.+++++|+..|++               
T Consensus         5 ~~~W~vkNG~~DeVk~~--------v~~g~nVn-~-~~ggR~plhyAAD~GQl~ilefli~iGA~---------------   59 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQS--------VNEGLNVN-E-IYGGRTPLHYAADYGQLSILEFLISIGAN---------------   59 (117)
T ss_pred             hHhhhhccCcHHHHHHH--------HHccccHH-H-HhCCcccchHhhhcchHHHHHHHHHhccc---------------
Confidence            47899999999999444        45554442 1 22589999999999999999999998877               


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHH
Q psy4222         226 IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENY  295 (367)
Q Consensus       226 ~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~l  295 (367)
                                 ++.+|+ .|-|||.-|+..||.+||++||+.| |+..++-.+|.+.+..+ ....+.++
T Consensus        60 -----------i~~kDK-ygITPLLsAvwEGH~~cVklLL~~G-Adrt~~~PdG~~~~eat-e~edIr~L  115 (117)
T KOG4214|consen   60 -----------IQDKDK-YGITPLLSAVWEGHRDCVKLLLQNG-ADRTIHAPDGTALIEAT-EEEDIREL  115 (117)
T ss_pred             -----------cCCccc-cCCcHHHHHHHHhhHHHHHHHHHcC-cccceeCCCchhHHhhc-cHHHHHHH
Confidence                       677788 9999999999999999999999999 99999999999877643 33334443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.58  E-value=1.3e-14  Score=154.37  Aligned_cols=138  Identities=20%  Similarity=0.100  Sum_probs=94.8

Q ss_pred             CChhhHHHHH-HHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcC---CHHHHHHHHhhcCC----
Q psy4222         139 LKSQELVKLR-KLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAV---NPAMTEMLLEIIGN----  210 (367)
Q Consensus       139 ~~~~~lt~L~-~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g---~~~iv~~LL~~~~d----  210 (367)
                      .+..+.|+|| .|+..++.+.+        ++|+..|+     .+..|.||||.|+..+   ...++.+++....+    
T Consensus        48 ~d~~G~t~Lh~~A~~~~~~eiv--------~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~  114 (743)
T TIGR00870        48 PDRLGRSALFVAAIENENLELT--------ELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPL  114 (743)
T ss_pred             cCccchhHHHHHHHhcChHHHH--------HHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCch
Confidence            3345567777 66666666666        66666654     3455677777776622   12223333332211    


Q ss_pred             -----------CCCcccccccCCCChHHHHHHHHhcCCCCCCC---------------CCCCcHHHHHHHcCCHHHHHHH
Q psy4222         211 -----------PAFTNLLYDSDTPSYIERSDILLDLYVNTPDK---------------ALNETPLHFAAKFGSVECVKRL  264 (367)
Q Consensus       211 -----------~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~---------------~~g~TpLH~Aa~~g~~~vv~~L  264 (367)
                                 .....++|.++..++.+++++|++.|++++.+               ..|+||||+|+..|+.+++++|
T Consensus       115 ~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lL  194 (743)
T TIGR00870       115 ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALL  194 (743)
T ss_pred             hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHH
Confidence                       12344556666677777777777777665521               1589999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCChHHHHHhcCC
Q psy4222         265 IGCAKIQTSVRNKEGKTPLDSSSGLD  290 (367)
Q Consensus       265 L~~g~ad~~~~n~~G~TPL~iA~~~g  290 (367)
                      +++| +|++.+|..|+||||+|+..+
T Consensus       195 l~~g-adin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       195 SEDP-ADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             hcCC-cchhhHhhhhhHHHHHHHhhh
Confidence            9999 899999999999999999876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.58  E-value=4.2e-14  Score=114.50  Aligned_cols=116  Identities=29%  Similarity=0.406  Sum_probs=102.2

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS  220 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~  220 (367)
                      ..+.|+||.|+..|+.+.+        ++|+..|.+. ...+..|.||||+|+..++.+++++|+..+.+          
T Consensus         5 ~~g~t~l~~a~~~~~~~~i--------~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~----------   65 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVV--------KLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD----------   65 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHH--------HHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence            3456899999999999999        8888888776 57788899999999999999999999998753          


Q ss_pred             CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                                      ++..+. .|.||+|+|+..++.+++++|++++ .+.+..|..|.||+++|...+..+
T Consensus        66 ----------------~~~~~~-~~~~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~  120 (126)
T cd00204          66 ----------------VNARDK-DGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLE  120 (126)
T ss_pred             ----------------ccccCC-CCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCHH
Confidence                            444455 7899999999999999999999999 899999999999999999887654

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507|consensus

Probab=99.57  E-value=1e-14  Score=146.69  Aligned_cols=148  Identities=22%  Similarity=0.212  Sum_probs=123.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcC----ChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC-----CCCCcc
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDN----PRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-----NPAFTN  215 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~----p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~-----d~~~~~  215 (367)
                      +.|..|+..||.+.+..+|...    +..+-....+..+.+|.+|+|+||.||.+|+.+++++|++..+     +.....
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            3578999999999997777432    1111122233336778899999999999999999999999864     466677


Q ss_pred             cccccCCCChHHHHHHHHhcC--CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         216 LLYDSDTPSYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~--~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      .++.++..|+.+++++|+..+  +|...- .|.||||.||++||.++|.+||.+| +|+-++|+.++|+|++|++.|.++
T Consensus        85 plhlaaw~g~~e~vkmll~q~d~~na~~~-e~~tplhlaaqhgh~dvv~~Ll~~~-adp~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQTDILNAVNI-ENETPLHLAAQHGHLEVVFYLLKKN-ADPFIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcccCCCcccc-cCcCccchhhhhcchHHHHHHHhcC-CCccccCcccccHHHHHHHhhhhH
Confidence            788899999999999999876  455555 8999999999999999999999999 999999999999999999888776


Q ss_pred             H
Q psy4222         294 N  294 (367)
Q Consensus       294 ~  294 (367)
                      .
T Consensus       163 V  163 (854)
T KOG0507|consen  163 V  163 (854)
T ss_pred             H
Confidence            4

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.54  E-value=4.5e-14  Score=150.15  Aligned_cols=145  Identities=22%  Similarity=0.171  Sum_probs=108.6

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHH-HHHHcCCHHHHHHHHhhcC-CCCCccccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALH-VSTKAVNPAMTEMLLEIIG-NPAFTNLLY  218 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh-~Aa~~g~~~iv~~LL~~~~-d~~~~~~~~  218 (367)
                      .++..+|+.||+.|+.+.+++++...+      +.++ +..|..|+|||| .|+..++.+++++|++.++ +.....++|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~------~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh   87 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPK------KLNI-NCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLH   87 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhcccc------ccCC-CCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHH
Confidence            355679999999999999954443321      5555 567889999999 8888999999999999985 444555666


Q ss_pred             ccCC---CChHHHHHHHHhcCCC--------CC---CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC--------
Q psy4222         219 DSDT---PSYIERSDILLDLYVN--------TP---DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN--------  276 (367)
Q Consensus       219 ~~~~---~~~~~~v~~Ll~~~~n--------~~---d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n--------  276 (367)
                      .++.   .+...++.++.+.+.+        ..   +...|.||||+||..|+.++|++|+++| ++++.++        
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~G-Adv~~~~~~~~~~~~  166 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERG-ASVPARACGDFFVKS  166 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCcCcCCchhhcC
Confidence            6654   2223345555554421        11   1126999999999999999999999999 9998764        


Q ss_pred             ------CCCChHHHHHhcCCcHH
Q psy4222         277 ------KEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       277 ------~~G~TPL~iA~~~g~~~  293 (367)
                            ..|+||||+|+..++.+
T Consensus       167 ~~~~~~~~g~tpL~~Aa~~~~~~  189 (743)
T TIGR00870       167 QGVDSFYHGESPLNAAACLGSPS  189 (743)
T ss_pred             CCCCcccccccHHHHHHHhCCHH
Confidence                  36999999999887766

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505|consensus

Probab=99.54  E-value=3.4e-14  Score=138.35  Aligned_cols=140  Identities=24%  Similarity=0.264  Sum_probs=122.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCC-----CCCcccccc
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN-----PAFTNLLYD  219 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d-----~~~~~~~~~  219 (367)
                      -.|..|+..|+.+.|        +.|+..|+.+ +..+.+|+|+||-+|.-.+.+||++|++.+++     ..+|..+|.
T Consensus        42 a~~l~A~~~~d~~ev--------~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlha  112 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEV--------RKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHA  112 (527)
T ss_pred             HHHHhccccccHHHH--------HHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchh
Confidence            468999999999999        7777888888 68889999999999999999999999999974     678999999


Q ss_pred             cCCCChHHHHHHHHhcCCCCC---CC-------C----------------------------------------------
Q psy4222         220 SDTPSYIERSDILLDLYVNTP---DK-------A----------------------------------------------  243 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~---d~-------~----------------------------------------------  243 (367)
                      ++.-+++.++++|+.+|++.-   ..       .                                              
T Consensus       113 aascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d  192 (527)
T KOG0505|consen  113 AASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELD  192 (527)
T ss_pred             hcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccc
Confidence            999999999999997763221   00       0                                              


Q ss_pred             ----CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         244 ----LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       244 ----~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                          .|.|.||+|+..|..++.++|+.+| .+++++|.+|+||||.|+..|+.+.
T Consensus       193 ~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag-~~~~~~D~dgWtPlHAAA~Wg~~~~  246 (527)
T KOG0505|consen  193 ARHARGATALHVAAANGYTEVAALLLQAG-YSVNIKDYDGWTPLHAAAHWGQEDA  246 (527)
T ss_pred             ccccccchHHHHHHhhhHHHHHHHHHHhc-cCcccccccCCCcccHHHHhhhHhH
Confidence                4789999999999999999999999 8999999999999999998877653

>KOG0502|consensus

Probab=99.53  E-value=1.2e-14  Score=127.06  Aligned_cols=140  Identities=19%  Similarity=0.181  Sum_probs=121.8

Q ss_pred             CCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-
Q psy4222         133 PSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-  211 (367)
Q Consensus       133 ~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-  211 (367)
                      .+-...++..+.|||.||+..|++..|        ++|+..|++| ....+.+.++|.+|++.|..+||++||.++.|. 
T Consensus       150 ~n~VN~~De~GfTpLiWAaa~G~i~vV--------~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN  220 (296)
T KOG0502|consen  150 NNKVNACDEFGFTPLIWAAAKGHIPVV--------QFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVDVN  220 (296)
T ss_pred             hccccCccccCchHhHHHHhcCchHHH--------HHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc
Confidence            344667889999999999999999999        9999999999 466677889999999999999999999998753 


Q ss_pred             ----CCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHH
Q psy4222         212 ----AFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD  284 (367)
Q Consensus       212 ----~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~  284 (367)
                          +...++..+...++..|++.|+..|++..  ++ .|.+++-.|+..|+. +|+..++.. ++++.+|..-.||+|
T Consensus       221 vyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~d-sGy~~mdlAValGyr-~Vqqvie~h-~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  221 VYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDD-SGYWIMDLAVALGYR-IVQQVIEKH-ALKLCQDSEKRTPLH  296 (296)
T ss_pred             eeccCCCceeeeeecCChHHHHHHHHhcCCCcccccc-cCCcHHHHHHHhhhH-HHHHHHHHH-HHHHhhcccCCCCCC
Confidence                34445566677899999999999998777  55 899999999999998 888888888 899999998888875

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.51  E-value=8.8e-14  Score=107.73  Aligned_cols=74  Identities=32%  Similarity=0.426  Sum_probs=66.4

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         189 LHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       189 Lh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                      ||+||+.|+.+++++|++.+.+.                          +     .|+||||+||..|+.+++++|+++|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~--------------------------~-----~~~~~l~~A~~~~~~~~~~~Ll~~g   49 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI--------------------------N-----LGNTALHYAAENGNLEIVKLLLENG   49 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT--------------------------T-----SSSBHHHHHHHTTTHHHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC--------------------------C-----CCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            79999999999999999976442                          2     2789999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         269 KIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       269 ~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                       ++++.+|.+|+||||+|+..|+.+.
T Consensus        50 -~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen   50 -ADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             -TCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             -ccccccCCCCCCHHHHHHHcCCHHH
Confidence             9999999999999999999998874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.50  E-value=1.5e-13  Score=122.65  Aligned_cols=121  Identities=26%  Similarity=0.262  Sum_probs=106.7

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCC-----HHHHHHHHhhcCCCCCcc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN-----PAMTEMLLEIIGNPAFTN  215 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~-----~~iv~~LL~~~~d~~~~~  215 (367)
                      ....++++.++..++.+.+        .+++..|.++ +.++..|.||||+|+..|+     .+++++||+.+++.    
T Consensus        71 ~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~----  137 (235)
T COG0666          71 LDGRLPLHSAASKGDDKIV--------KLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL----  137 (235)
T ss_pred             ccccCHHHHHHHcCcHHHH--------HHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCC----
Confidence            3456789999999999999        8999999999 8999999999999999999     89999999988730    


Q ss_pred             cccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHH
Q psy4222         216 LLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENY  295 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~l  295 (367)
                                         ...+..+. .|+||||+|+..|+.+++++|++.| ++++.+|..|.|++++|+..++.+.+
T Consensus       138 -------------------~~~~~~~~-~g~tpl~~A~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~  196 (235)
T COG0666         138 -------------------DVNNLRDE-DGNTPLHWAALNGDADIVELLLEAG-ADPNSRNSYGVTALDPAAKNGRIELV  196 (235)
T ss_pred             -------------------CCccccCC-CCCchhHHHHHcCchHHHHHHHhcC-CCCcccccCCCcchhhhcccchHHHH
Confidence                               00334466 9999999999999999999999999 99999999999999999999887743

>KOG0507|consensus

Probab=99.50  E-value=2.3e-14  Score=144.19  Aligned_cols=151  Identities=23%  Similarity=0.209  Sum_probs=109.1

Q ss_pred             hhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy4222         127 LAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLE  206 (367)
Q Consensus       127 ~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~  206 (367)
                      ++..++..+...  ..++++||.|++.|+.+.+        +.|+.+++.+ +.....|.||||.||+.||.+++++||.
T Consensus        68 lle~ea~ldl~d--~kg~~plhlaaw~g~~e~v--------kmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~  136 (854)
T KOG0507|consen   68 LLDYEALLDLCD--TKGILPLHLAAWNGNLEIV--------KMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLK  136 (854)
T ss_pred             Hhcchhhhhhhh--ccCcceEEehhhcCcchHH--------HHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHh
Confidence            344455444444  5666777777777777777        6666666444 4555667777777777777777777777


Q ss_pred             hcCCC----------------------------------------------CCcccccccCCCChHHHHHHHHhcCCCCC
Q psy4222         207 IIGNP----------------------------------------------AFTNLLYDSDTPSYIERSDILLDLYVNTP  240 (367)
Q Consensus       207 ~~~d~----------------------------------------------~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~  240 (367)
                      +++|+                                              ..+..+|.++.+++.++++.|+..|++++
T Consensus       137 ~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din  216 (854)
T KOG0507|consen  137 KNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDIN  216 (854)
T ss_pred             cCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcc
Confidence            76531                                              12333455567888999999999998888


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcC
Q psy4222         241 DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGL  289 (367)
Q Consensus       241 d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~  289 (367)
                      -.....|+||.|+..|..+||++|++.| .+..++|.+|+|+|++....
T Consensus       217 ~~t~~gtalheaalcgk~evvr~ll~~g-in~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  217 YTTEDGTALHEAALCGKAEVVRFLLEIG-INTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             cccccchhhhhHhhcCcchhhhHHHhhc-cccccccccchHHHHHHHhc
Confidence            5436778999999999999999999998 88999999999999887633

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.50  E-value=3.4e-14  Score=121.75  Aligned_cols=100  Identities=13%  Similarity=0.026  Sum_probs=83.9

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCC-CCCCcHHHHHHHcCCHHHHHHHHhh-cCCCCCcccc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHE-GCRYNALHVSTKAVNPAMTEMLLEI-IGNPAFTNLL  217 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d-~~G~TpLh~Aa~~g~~~iv~~LL~~-~~d~~~~~~~  217 (367)
                      +..+.|+||.|+..|+.+.+ +++    ++|+..|++. +.++ ..|+||||+|+..|+.+++++|+.. +++       
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~-e~v----~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-------  118 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQ-EKL----KLLMEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-------  118 (154)
T ss_pred             cCCCCEEEEeecccCchhHH-HHH----HHHHHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-------
Confidence            45667999999999987642 233    8899999888 4666 5899999999999999999999974 555       


Q ss_pred             cccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q psy4222         218 YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTS  273 (367)
Q Consensus       218 ~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~  273 (367)
                                         ++..+. .|+||||+|+..|+.+++++|+++| ++.+
T Consensus       119 -------------------~n~~~~-~g~tpL~~A~~~~~~~i~~~Ll~~g-a~~~  153 (154)
T PHA02736        119 -------------------MEILNY-AFKTPYYVACERHDAKMMNILRAKG-AQCK  153 (154)
T ss_pred             -------------------CccccC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence                               555666 8999999999999999999999999 7765

>PHA02792 ankyrin-like protein; Provisional

Probab=99.49  E-value=1.3e-13  Score=140.23  Aligned_cols=131  Identities=14%  Similarity=0.086  Sum_probs=104.8

Q ss_pred             HHHHHHHHcC--CHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCc-------c
Q psy4222         145 VKLRKLIEKG--NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT-------N  215 (367)
Q Consensus       145 t~L~~A~~~G--~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~-------~  215 (367)
                      .-||.-.+.+  +.+.+        ++|++.|++..  + ..+.+.+|.||..|+.++|++|+++|++.+..       .
T Consensus       308 ~~l~~Yl~~~~v~ieiI--------K~LId~Ga~~~--r-~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~T  376 (631)
T PHA02792        308 DLLSEYVSYHTVYINVI--------KCMIDEGATLY--R-FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIM  376 (631)
T ss_pred             HHHHHHHhcCCccHHHH--------HHHHHCCCccc--c-CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChh
Confidence            3588888888  66667        99999998762  2 23567899999999999999999999874321       2


Q ss_pred             cccccC---CCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222         216 LLYDSD---TPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG  288 (367)
Q Consensus       216 ~~~~~~---~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~  288 (367)
                      +++.+.   .....+++++|+.+|++++  |. .|+||||+|+..++.+++++|+++| ++++.+|..|+||||+|+.
T Consensus       377 pLh~A~~n~~~~v~~IlklLIs~GADIN~kD~-~G~TPLh~Aa~~~n~eivelLLs~G-ADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        377 PLFPTLSIHESDVLSILKLCKPYIDDINKIDK-HGRSILYYCIESHSVSLVEWLIDNG-ADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHHHhccHhHHHHHHHHHhcCCccccccc-cCcchHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHH
Confidence            223222   2233457888999886665  66 8999999999999999999999999 9999999999999999974

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.47  E-value=4.9e-13  Score=126.26  Aligned_cols=106  Identities=16%  Similarity=0.042  Sum_probs=88.7

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccC
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  221 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~  221 (367)
                      .+.||||+|+..|+.+.+        ++|++.|+++....+..|.||||+|+..|+.+++++|+..|++           
T Consensus        69 ~g~TpLh~Aa~~~~~eiv--------klLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAd-----------  129 (300)
T PHA02884         69 SKTNPLIYAIDCDNDDAA--------KLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGAD-----------  129 (300)
T ss_pred             CCCCHHHHHHHcCCHHHH--------HHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----------
Confidence            456899999999999999        9999999999422356799999999999999999999999877           


Q ss_pred             CCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222         222 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG  288 (367)
Q Consensus       222 ~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~  288 (367)
                                     ++..+. .|+||||+|+..++.+++.++.  | ..   .+..+.+|++++..
T Consensus       130 ---------------in~kd~-~G~TpL~~A~~~~~~~~~~~~~--~-~~---~~~~~~~~~~~~~n  174 (300)
T PHA02884        130 ---------------INIQTN-DMVTPIELALMICNNFLAFMIC--D-NE---ISNFYKHPKKILIN  174 (300)
T ss_pred             ---------------CCCCCC-CCCCHHHHHHHhCChhHHHHhc--C-Cc---ccccccChhhhhcc
Confidence                           556667 8999999999999999886665  3 22   46678889887653

>PHA02741 hypothetical protein; Provisional

Probab=99.46  E-value=3e-13  Score=117.87  Aligned_cols=98  Identities=15%  Similarity=0.080  Sum_probs=83.8

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCC-CCCcHHHHHHHcCCHHHHHHHHhh-cCCCCCccc
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEG-CRYNALHVSTKAVNPAMTEMLLEI-IGNPAFTNL  216 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~-~~d~~~~~~  216 (367)
                      .+..+.|+||.|+..|+.+.+.+++    ++|+..|++. +.++. .|+||||+|+..++.+++++||.. +++      
T Consensus        56 ~d~~g~T~Lh~A~~~g~~~~~~~ii----~~Ll~~gadi-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~------  124 (169)
T PHA02741         56 TDDAGQMCIHIAAEKHEAQLAAEII----DHLIELGADI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID------  124 (169)
T ss_pred             cCCCCCcHHHHHHHcCChHHHHHHH----HHHHHcCCCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC------
Confidence            4455679999999999976666666    9999999988 56664 899999999999999999999974 655      


Q ss_pred             ccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         217 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       217 ~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                                          ++..+. .|+||||+|+..|+.+++++|++++
T Consensus       125 --------------------~~~~n~-~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741        125 --------------------LHFCNA-DNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             --------------------CCcCCC-CCCCHHHHHHHCCCHHHHHHHHHHH
Confidence                                455566 8999999999999999999999987

>KOG1710|consensus

Probab=99.46  E-value=1.8e-13  Score=124.00  Aligned_cols=156  Identities=19%  Similarity=0.203  Sum_probs=117.2

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccC
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  221 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~  221 (367)
                      +...+|..++-+|+.+.+        ..|++.-.+. +..|..|.++|..|+..|+.++|++||+.|+|           
T Consensus        11 ~~~~~Lle~i~Kndt~~a--------~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaD-----------   70 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAA--------LALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGAD-----------   70 (396)
T ss_pred             chhhHHHHHHccCcHHHH--------HHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCC-----------
Confidence            344689999999999999        5555543333 57799999999999999999999999999877           


Q ss_pred             CCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH--HHHhhh
Q psy4222         222 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE--NYLHTK  299 (367)
Q Consensus       222 ~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~--~ll~~~  299 (367)
                                     +|......+.||||+||..|+.++.++|++.| +.....|.-|+|+-.+|+--|+.+  ++++++
T Consensus        71 ---------------vN~~qhg~~YTpLmFAALSGn~dvcrllldaG-a~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   71 ---------------VNDKQHGTLYTPLMFAALSGNQDVCRLLLDAG-ARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             ---------------cCcccccccccHHHHHHHcCCchHHHHHHhcc-CccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence                           55554448899999999999999999999999 999999999999999999777766  455554


Q ss_pred             chHHHHhccCCCCC-CCCCCCCccccchHHHhccC
Q psy4222         300 LLDTVAAKKDETNG-NTVDQPSVDMISPIEKLCVN  333 (367)
Q Consensus       300 ~~~~l~~~~~~~~~-~t~~~~~~~~~~~l~~~~~~  333 (367)
                      +-...........| .+-...+.....+++++|-.
T Consensus       135 ~t~~~leyyt~p~g~~~ep~~Pp~La~~~H~~~t~  169 (396)
T KOG1710|consen  135 ITIDVLEYYTRPKGYEGEPEYPPELAVFIHSLCTS  169 (396)
T ss_pred             ccHHHHHHhccccccCCCCCCCHHHHHHHHHHHhc
Confidence            33322222222222 22223344566677887753

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=7.3e-14  Score=98.94  Aligned_cols=48  Identities=40%  Similarity=0.724  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH
Q psy4222         237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS  286 (367)
Q Consensus       237 ~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA  286 (367)
                      ++..|. .|.||||+||.+|+.++|++|+..| ++++++|.+|+||||+|
T Consensus         9 ~n~~d~-~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDK-YGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---T-TS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CcCcCC-CCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            555677 9999999999999999999999998 99999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=5.7e-13  Score=139.51  Aligned_cols=106  Identities=25%  Similarity=0.284  Sum_probs=96.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCC
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  224 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~  224 (367)
                      ..|+.|+..|+.+.+        ++|+..|+++ +.+|..|+||||+||..|+.+++++|++.|++              
T Consensus        84 ~~L~~aa~~G~~~~v--------k~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad--------------  140 (664)
T PTZ00322         84 VELCQLAASGDAVGA--------RILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD--------------  140 (664)
T ss_pred             HHHHHHHHcCCHHHH--------HHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC--------------
Confidence            369999999999999        9999999988 67899999999999999999999999999877              


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-------CCCCCCCCCCCCChHHHHHh
Q psy4222         225 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-------AKIQTSVRNKEGKTPLDSSS  287 (367)
Q Consensus       225 ~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~-------g~ad~~~~n~~G~TPL~iA~  287 (367)
                                  ++..|. .|+||||+|+..|+.+++++|+.+       | ++.+..+..|.+|+..+.
T Consensus       141 ------------vn~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~g-a~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        141 ------------PTLLDK-DGKTPLELAEENGFREVVQLLSRHSQCHFELG-ANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             ------------CCCCCC-CCCCHHHHHHHCCcHHHHHHHHhCCCcccccC-CCCCccccCCCCccchhh
Confidence                        566677 899999999999999999999999       7 889999999998877665

>PHA02792 ankyrin-like protein; Provisional

Probab=99.44  E-value=2.3e-13  Score=138.45  Aligned_cols=139  Identities=14%  Similarity=0.038  Sum_probs=103.2

Q ss_pred             hhHHHHHH-HHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHH-cCCHHHHHHHHhhcCCCC-----Cc
Q psy4222         142 QELVKLRK-LIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTK-AVNPAMTEMLLEIIGNPA-----FT  214 (367)
Q Consensus       142 ~~lt~L~~-A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~-~g~~~iv~~LL~~~~d~~-----~~  214 (367)
                      .+.++||+ |...|++|.|        ++|+.+|+++ +.++..|.+|||+|+. .++.+++++||+.|++..     ..
T Consensus        70 ~~~~~~~~~~s~n~~lElv--------k~LI~~GAdv-N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~  140 (631)
T PHA02792         70 NDFDIFEYLCSDNIDIELL--------KLLISKGLEI-NSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY  140 (631)
T ss_pred             CCccHHHHHHHhcccHHHH--------HHHHHcCCCc-ccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence            34457775 4567999999        9999999999 5667779999999976 699999999999998732     11


Q ss_pred             c-cccccCCCChHHHHHHHH----hcCCCCCCCCCCCcHHHHHHHcC-------CHHHHHHHHhCCCCCCCCCCCCCChH
Q psy4222         215 N-LLYDSDTPSYIERSDILL----DLYVNTPDKALNETPLHFAAKFG-------SVECVKRLIGCAKIQTSVRNKEGKTP  282 (367)
Q Consensus       215 ~-~~~~~~~~~~~~~v~~Ll----~~~~n~~d~~~g~TpLH~Aa~~g-------~~~vv~~LL~~g~ad~~~~n~~G~TP  282 (367)
                      . +............-..+-    ++-+|..++ .|.||||+|+..+       +.+++++|+++| ++++.+|..|.||
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g-~~~~~~d~~g~t~  218 (631)
T PHA02792        141 KIIIEQITRAEYYNWDDELDDYDYDYTTDYDDR-MGKTVLYYYIITRSQDGYATSLDVINYLISHE-KEMRYYTYREHTT  218 (631)
T ss_pred             chhhhhcccccccchhhhccccccccccccCCC-CCCchHHHHHhhCCcccccCCHHHHHHHHhCC-CCcCccCCCCChH
Confidence            1 111111111111111111    122566677 8999999999999       899999999999 9999999999999


Q ss_pred             HHHHhcCCc
Q psy4222         283 LDSSSGLDL  291 (367)
Q Consensus       283 L~iA~~~g~  291 (367)
                      ||+|+.+.+
T Consensus       219 l~~~~~~~~  227 (631)
T PHA02792        219 LYYYVDKCD  227 (631)
T ss_pred             HHHHHHccc
Confidence            999997763

>KOG3676|consensus

Probab=99.43  E-value=9.6e-13  Score=133.95  Aligned_cols=155  Identities=19%  Similarity=0.158  Sum_probs=123.6

Q ss_pred             CCCCCChhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC
Q psy4222         135 PFKSLKSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP  211 (367)
Q Consensus       135 ~f~~~~~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~  211 (367)
                      .++....-+.|.||.|+.+   +.-+.++.+++-.|+++.+.-.    ...-.|.||||+|+.+.+.++|++||+.|||.
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~----~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV  210 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYT----SEEYYGQSALHIAIVNRDAELVRLLLAAGADV  210 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhh----hHhhcCcchHHHHHHhccHHHHHHHHHcCCch
Confidence            4444445667899999973   5557888888777766544332    22456999999999999999999999999861


Q ss_pred             ------------CCccc---------ccc-------cCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHH
Q psy4222         212 ------------AFTNL---------LYD-------SDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECV  261 (367)
Q Consensus       212 ------------~~~~~---------~~~-------~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv  261 (367)
                                  +....         +|.       |++-++.+++++|+++++|++  |. +|+|.||..+.+-..++-
T Consensus       211 ~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS-~GNTVLH~lVi~~~~~My  289 (782)
T KOG3676|consen  211 HARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDS-NGNTVLHMLVIHFVTEMY  289 (782)
T ss_pred             hhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCcccc-CCChHHHHHHHHHHHHHH
Confidence                        11111         222       377899999999999987776  66 999999999999999999


Q ss_pred             HHHHhCCCCC--CCCCCCCCChHHHHHhcCCcHHHH
Q psy4222         262 KRLIGCAKIQ--TSVRNKEGKTPLDSSSGLDLLENY  295 (367)
Q Consensus       262 ~~LL~~g~ad--~~~~n~~G~TPL~iA~~~g~~~~l  295 (367)
                      .++|++| ++  ..++|++|.|||-+|+..|..+.+
T Consensus       290 ~~~L~~g-a~~l~~v~N~qgLTPLtLAaklGk~emf  324 (782)
T KOG3676|consen  290 DLALELG-ANALEHVRNNQGLTPLTLAAKLGKKEMF  324 (782)
T ss_pred             HHHHhcC-CCccccccccCCCChHHHHHHhhhHHHH
Confidence            9999999 88  899999999999999999988754

>KOG0515|consensus

Probab=99.38  E-value=1e-12  Score=127.48  Aligned_cols=108  Identities=24%  Similarity=0.230  Sum_probs=90.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCC
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP  223 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~  223 (367)
                      +.-|..|+..|.++.|++++        ..-.+| ...+..|.|+||-|+..||.+||++||+.|+|             
T Consensus       551 LaLLLDaaLeGEldlVq~~i--------~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~gan-------------  608 (752)
T KOG0515|consen  551 LALLLDAALEGELDLVQRII--------YEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGAN-------------  608 (752)
T ss_pred             HHHHHhhhhcchHHHHHHHH--------HhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCc-------------
Confidence            44588999999999996666        333455 35578899999999999999999999999877             


Q ss_pred             ChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHh
Q psy4222         224 SYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS  287 (367)
Q Consensus       224 ~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~  287 (367)
                                   +|..|. +||||||.||.++++.+++.|++.|+|..-..=.++.||.+-+-
T Consensus       609 -------------VNa~DS-dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCe  658 (752)
T KOG0515|consen  609 -------------VNAADS-DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCE  658 (752)
T ss_pred             -------------ccCccC-CCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcc
Confidence                         777888 99999999999999999999999996555555578999987754

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.36  E-value=1.5e-12  Score=91.45  Aligned_cols=54  Identities=35%  Similarity=0.530  Sum_probs=44.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy4222         185 RYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRL  264 (367)
Q Consensus       185 G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~L  264 (367)
                      |+||||+||+.|+.+++++|++.+.+                          ++..|. .|+||||+||+.|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d--------------------------in~~d~-~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD--------------------------INAQDE-DGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG--------------------------TT-B-T-TS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC--------------------------CCCCCC-CCCCHHHHHHHccCHHHHHHH
Confidence            68999999999999999999998765                          566666 899999999999999999999


Q ss_pred             H
Q psy4222         265 I  265 (367)
Q Consensus       265 L  265 (367)
                      |
T Consensus        54 l   54 (54)
T PF13637_consen   54 L   54 (54)
T ss_dssp             H
T ss_pred             C
Confidence            6

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.27  E-value=7.6e-12  Score=87.76  Aligned_cols=50  Identities=30%  Similarity=0.517  Sum_probs=41.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHH
Q psy4222         245 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENY  295 (367)
Q Consensus       245 g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~l  295 (367)
                      |+||||+||..|+.+++++|+++| ++++.+|.+|.||||+|+..|+++.+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~   50 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIV   50 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHH
Confidence            789999999999999999999999 99999999999999999999987743

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.24  E-value=8.8e-12  Score=88.22  Aligned_cols=55  Identities=25%  Similarity=0.340  Sum_probs=31.4

Q ss_pred             HHhcC-CCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcH
Q psy4222         170 LVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETP  248 (367)
Q Consensus       170 Ll~~g-~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~Tp  248 (367)
                      |++.| .++ +.+|..|+||||+||..|+.+++++||+.+++                          ++..|+ .|+||
T Consensus         1 LL~~~~~~~-n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d--------------------------~~~~d~-~G~Tp   52 (56)
T PF13857_consen    1 LLEHGPADV-NAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD--------------------------PNAKDK-DGQTP   52 (56)
T ss_dssp             -----T--T-T---TTS--HHHHHHHHT-HHHHHHHHHCT----------------------------TT---T-TS--H
T ss_pred             CCccCcCCC-cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC--------------------------CCCCcC-CCCCH
Confidence            45666 444 78899999999999999999999999988876                          667778 99999


Q ss_pred             HHHH
Q psy4222         249 LHFA  252 (367)
Q Consensus       249 LH~A  252 (367)
                      ||+|
T Consensus        53 l~~A   56 (56)
T PF13857_consen   53 LHYA   56 (56)
T ss_dssp             HHH-
T ss_pred             HHhC
Confidence            9998

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.22  E-value=1e-10  Score=94.49  Aligned_cols=86  Identities=31%  Similarity=0.418  Sum_probs=76.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy4222         181 HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC  260 (367)
Q Consensus       181 ~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~v  260 (367)
                      .+..|.||||+|+..|+.+++++|++.+.+                          .+..+. .|.||||+|+..++.++
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~--------------------------~~~~~~-~g~~~l~~a~~~~~~~~   55 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD--------------------------VNAKDN-DGRTPLHLAAKNGHLEI   55 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC--------------------------CCccCC-CCCcHHHHHHHcCCHHH
Confidence            356799999999999999999999998865                          234455 89999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         261 VKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       261 v~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +++|++.+ ++++..|..|.||+|+|+..++.+.
T Consensus        56 ~~~ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~   88 (126)
T cd00204          56 VKLLLEKG-ADVNARDKDGNTPLHLAARNGNLDV   88 (126)
T ss_pred             HHHHHHcC-CCccccCCCCCCHHHHHHHcCcHHH
Confidence            99999999 8999999999999999999988653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.16  E-value=7.9e-11  Score=89.82  Aligned_cols=62  Identities=26%  Similarity=0.300  Sum_probs=55.6

Q ss_pred             HhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHH
Q psy4222         233 LDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENY  295 (367)
Q Consensus       233 l~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~l  295 (367)
                      +..|+|+++...|+||||+||-+|+.+++++|+..| |+++.+|++|-|||--|+..||.+..
T Consensus        22 v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iG-A~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen   22 VNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIG-ANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             HHccccHHHHhCCcccchHhhhcchHHHHHHHHHhc-cccCCccccCCcHHHHHHHHhhHHHH
Confidence            334467776668999999999999999999999999 99999999999999999999998864

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.15  E-value=1.3e-10  Score=121.84  Aligned_cols=80  Identities=26%  Similarity=0.308  Sum_probs=72.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy4222         187 NALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG  266 (367)
Q Consensus       187 TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~  266 (367)
                      +.|+.||..|+.+++++|++.|++                          +|..|. .|+||||+||..|+.++|++|++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad--------------------------in~~d~-~G~TpLh~Aa~~g~~eiv~~LL~  136 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD--------------------------PNCRDY-DGRTPLHIACANGHVQVVRVLLE  136 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC--------------------------CCCcCC-CCCcHHHHHHHCCCHHHHHHHHH
Confidence            358899999999999999998876                          556667 89999999999999999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         267 CAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       267 ~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +| ++++.+|..|.||||+|+..++.+.
T Consensus       137 ~G-advn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322        137 FG-ADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             CC-CCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            99 9999999999999999999988764

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.09  E-value=2.9e-10  Score=101.20  Aligned_cols=97  Identities=24%  Similarity=0.245  Sum_probs=85.2

Q ss_pred             CCCChhhHHHHHHHHHcCC-----HHHHHHHHhcCChhHHhcCC--CccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC
Q psy4222         137 KSLKSQELVKLRKLIEKGN-----LADVRKLVWDNPRYLVSSGD--FPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG  209 (367)
Q Consensus       137 ~~~~~~~lt~L~~A~~~G~-----~~~v~~ll~~~p~~Ll~~g~--~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~  209 (367)
                      ...+..+.|+||.|+..|+     .+.+        ++|+..|+  .....++..|+||||+|+..|+.+++++|++.++
T Consensus       100 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~--------~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~  171 (235)
T COG0666         100 NAKDADGDTPLHLAALNGNPPEGNIEVA--------KLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA  171 (235)
T ss_pred             ccccCCCCcHHHHHHhcCCcccchHHHH--------HHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCC
Confidence            4456777899999999999     9999        89999998  5657779999999999999999999999999887


Q ss_pred             CCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         210 NPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                      +                          .+..+. .|.|+||+|+..|+.++++.|+..+
T Consensus       172 ~--------------------------~~~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         172 D--------------------------PNSRNS-YGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             C--------------------------Cccccc-CCCcchhhhcccchHHHHHHHHhcC
Confidence            6                          333355 8999999999999999999999974

>KOG0783|consensus

Probab=99.04  E-value=8.4e-11  Score=119.41  Aligned_cols=92  Identities=23%  Similarity=0.281  Sum_probs=82.6

Q ss_pred             HHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHH
Q psy4222         170 LVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPL  249 (367)
Q Consensus       170 Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpL  249 (367)
                      +-..+.+..+.+|..|+|+||+|+..|..+++++||++|.+                          ++++|+..|+|||
T Consensus        37 ~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid--------------------------v~vqD~ESG~taL   90 (1267)
T KOG0783|consen   37 SEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID--------------------------VFVQDEESGYTAL   90 (1267)
T ss_pred             HHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce--------------------------eeeccccccchHh
Confidence            33444444577899999999999999999999999999866                          7778877999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222         250 HFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG  288 (367)
Q Consensus       250 H~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~  288 (367)
                      |-|..+|+++|+-+||++| +...++|++|..||++.++
T Consensus        91 HRaiyyG~idca~lLL~~g-~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   91 HRAIYYGNIDCASLLLSKG-RSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hHhhhhchHHHHHHHHhcC-CceEEecccCCCHHHHHhh
Confidence            9999999999999999999 9999999999999999886

>KOG4369|consensus

Probab=99.01  E-value=7.9e-10  Score=115.27  Aligned_cols=142  Identities=18%  Similarity=0.165  Sum_probs=118.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCC------CCCcccc
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN------PAFTNLL  217 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d------~~~~~~~  217 (367)
                      -|+|-.||..|+.|.|        ++|+..|++. ..+|..|.+||.+|+-.||..+|+.||.+.++      ......+
T Consensus       758 ~t~LT~acaggh~e~v--------ellv~rgani-ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEV--------ELLVVRGANI-EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTML  828 (2131)
T ss_pred             cccccccccCccHHHH--------HHHHHhcccc-cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceE
Confidence            3689999999999999        8888999888 57899999999999999999999999998764      3344455


Q ss_pred             cccCCCChHHHHHHHHhcCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC--CCCChHHHHHhcCCcHHH
Q psy4222         218 YDSDTPSYIERSDILLDLYVNTPDK-ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN--KEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       218 ~~~~~~~~~~~v~~Ll~~~~n~~d~-~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n--~~G~TPL~iA~~~g~~~~  294 (367)
                      -.++..+..+++++||.+|+|...+ ....|||.+|..-|..++|+.||.+| +.+|.+.  +-|-.||.+|...|+...
T Consensus       829 Slacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~G-seInSrtgSklgisPLmlatmngh~~a  907 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSG-SEINSRTGSKLGISPLMLATMNGHQAA  907 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcc-cccccccccccCcchhhhhhhccccHH
Confidence            5667788899999999999888754 36789999999999999999999998 7777654  568889999998888775


Q ss_pred             H
Q psy4222         295 Y  295 (367)
Q Consensus       295 l  295 (367)
                      .
T Consensus       908 t  908 (2131)
T KOG4369|consen  908 T  908 (2131)
T ss_pred             H
Confidence            4

>KOG0515|consensus

Probab=98.98  E-value=7.8e-10  Score=107.69  Aligned_cols=93  Identities=17%  Similarity=0.178  Sum_probs=74.1

Q ss_pred             CCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC
Q psy4222         134 SPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF  213 (367)
Q Consensus       134 ~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~  213 (367)
                      .+-..|+.+++|+||.||..|+.++|        +|||+.|++. +..|.+||||||+||..++..+|+.|++.|+..--
T Consensus       574 ~DpSqpNdEGITaLHNAiCaghyeIV--------kFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfA  644 (752)
T KOG0515|consen  574 TDPSQPNDEGITALHNAICAGHYEIV--------KFLIEFGANV-NAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFA  644 (752)
T ss_pred             cCCCCCCccchhHHhhhhhcchhHHH--------HHHHhcCCcc-cCccCCCCchhhhhhhcCchHHHHHHHhccceEEe
Confidence            34556788999999999999999999        9999999999 79999999999999999999999999999975221


Q ss_pred             ccc------cccc--CCCChHHHHHHHHhc
Q psy4222         214 TNL------LYDS--DTPSYIERSDILLDL  235 (367)
Q Consensus       214 ~~~------~~~~--~~~~~~~~v~~Ll~~  235 (367)
                      ..+      .-.+  ...|+.+|.+||-+.
T Consensus       645 sTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  645 STLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             eecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            111      1000  236677777777643

>KOG3676|consensus

Probab=98.98  E-value=1.6e-09  Score=110.80  Aligned_cols=145  Identities=22%  Similarity=0.175  Sum_probs=108.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcC----CCccccCCCCCCcHHHHHHH---cCCHHHHHHHHhhcCC-------
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSG----DFPTILHEGCRYNALHVSTK---AVNPAMTEMLLEIIGN-------  210 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g----~~~~~~~d~~G~TpLh~Aa~---~g~~~iv~~LL~~~~d-------  210 (367)
                      ..+..|..++.++....++    +++....    +-..+.+...|.|.||.|..   .++.++++.||+.-..       
T Consensus       103 ~~~~~~~~~~~l~~l~~l~----~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~  178 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLL----KFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYT  178 (782)
T ss_pred             hhhhhccccccHHHHhccc----hhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhh
Confidence            5677888888888875554    3321110    01111223459999999997   4566889999986431       


Q ss_pred             ---CCCcccccccCCCChHHHHHHHHhcCCCCCCCC------------------------CCCcHHHHHHHcCCHHHHHH
Q psy4222         211 ---PAFTNLLYDSDTPSYIERSDILLDLYVNTPDKA------------------------LNETPLHFAAKFGSVECVKR  263 (367)
Q Consensus       211 ---~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~------------------------~g~TpLH~Aa~~g~~~vv~~  263 (367)
                         --...++|.+..+.+.++|++|++.|+|++.+.                        .|+.||-+||..++.+|+++
T Consensus       179 ~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  179 SEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             hHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence               234566777788889999999999998776321                        47899999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         264 LIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       264 LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      |+++| ||++++|..|+|.||+.+.+...+.
T Consensus       259 Ll~~g-Ad~~aqDS~GNTVLH~lVi~~~~~M  288 (782)
T KOG3676|consen  259 LLAHG-ADPNAQDSNGNTVLHMLVIHFVTEM  288 (782)
T ss_pred             HHhcC-CCCCccccCCChHHHHHHHHHHHHH
Confidence            99999 9999999999999999987744443

>KOG1710|consensus

Probab=98.97  E-value=1.6e-09  Score=98.74  Aligned_cols=97  Identities=22%  Similarity=0.242  Sum_probs=83.5

Q ss_pred             CCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC
Q psy4222         134 SPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF  213 (367)
Q Consensus       134 ~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~  213 (367)
                      .+++.  +.+|++|..|+.+|+++.|        +.|++.|++.+.-+++.+|||||+||..|+.+++++||+.|+.+..
T Consensus        38 vn~~D--~sGMs~LahAaykGnl~~v--------~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~  107 (396)
T KOG1710|consen   38 VNQRD--PSGMSVLAHAAYKGNLTLV--------ELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYL  107 (396)
T ss_pred             hhccC--CCcccHHHHHHhcCcHHHH--------HHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCcccc
Confidence            34444  5679999999999999999        9999999999888999999999999999999999999999876433


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC  267 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~  267 (367)
                      .                          +. -|+|+-..||.-|+.+||.++-.+
T Consensus       108 v--------------------------Ns-vgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  108 V--------------------------NS-VGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             c--------------------------cc-hhhhHHHHHHHhcchHHHHHHhcc
Confidence            2                          23 689999999999999999776544

>KOG4369|consensus

Probab=98.95  E-value=5.9e-10  Score=116.17  Aligned_cols=161  Identities=20%  Similarity=0.172  Sum_probs=97.4

Q ss_pred             hhhhhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHH
Q psy4222         124 MSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEM  203 (367)
Q Consensus       124 ~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~  203 (367)
                      |..++..+....-+.-...+..+|..|...|+...+        +.|++.|.+.+.....+++|+|-+|+..|+.+++.+
T Consensus       873 I~~llS~GseInSrtgSklgisPLmlatmngh~~at--------~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~l  944 (2131)
T KOG4369|consen  873 IHALLSSGSEINSRTGSKLGISPLMLATMNGHQAAT--------LSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFL  944 (2131)
T ss_pred             HHHHhhcccccccccccccCcchhhhhhhccccHHH--------HHHhcccchhccccccccccceeeccccCcchHHHH
Confidence            333455555555555566666677777777777777        566666655544445556666666666666666666


Q ss_pred             HHhhcCC-----CCCcccccccCCCChHHHHHHHHhcCCCCCCC---CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q psy4222         204 LLEIIGN-----PAFTNLLYDSDTPSYIERSDILLDLYVNTPDK---ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVR  275 (367)
Q Consensus       204 LL~~~~d-----~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~---~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~  275 (367)
                      ||...++     ......+...+..|++++=++|++.|++++-.   ....|+|-+++..||...|+.|+... |-+.++
T Consensus       945 LLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~-atv~v~ 1023 (2131)
T KOG4369|consen  945 LLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGD-ATVRVP 1023 (2131)
T ss_pred             HHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCc-cceecc
Confidence            6665543     12222344455566666666666666655521   13456666666666666666666665 667777


Q ss_pred             CCCCChHHHHHhcCCcHH
Q psy4222         276 NKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       276 n~~G~TPL~iA~~~g~~~  293 (367)
                      |+.|.|+|-+||..|++.
T Consensus      1024 NkkG~T~Lwla~~Gg~ls 1041 (2131)
T KOG4369|consen 1024 NKKGCTVLWLASAGGALS 1041 (2131)
T ss_pred             cCCCCcccchhccCCccc
Confidence            777777777777666543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.88  E-value=2.3e-09  Score=65.60  Aligned_cols=30  Identities=37%  Similarity=0.516  Sum_probs=28.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q psy4222         244 LNETPLHFAAKFGSVECVKRLIGCAKIQTSV  274 (367)
Q Consensus       244 ~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~  274 (367)
                      +|+||||+||++|+.++|++||++| +|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g-advn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG-ADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC-CCCCC
Confidence            5899999999999999999999999 89874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.88  E-value=2.7e-09  Score=66.82  Aligned_cols=33  Identities=33%  Similarity=0.499  Sum_probs=31.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q psy4222         244 LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK  277 (367)
Q Consensus       244 ~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~  277 (367)
                      +|+||||+||..|+.++|++|+++| ++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-ADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-CCCCCCCC
Confidence            4899999999999999999999999 99999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818|consensus

Probab=98.74  E-value=4.7e-08  Score=94.79  Aligned_cols=79  Identities=27%  Similarity=0.282  Sum_probs=69.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy4222         188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC  267 (367)
Q Consensus       188 pLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~  267 (367)
                      -||-.++.|+.+.+-.||..|++.++                          .+...|.||||+|++.|+..-+++|+-+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~--------------------------~hpekg~TpLHvAAk~Gq~~Q~ElL~vY  189 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANF--------------------------FHPEKGNTPLHVAAKAGQILQAELLAVY  189 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCC--------------------------CCcccCCchhHHHHhccchhhhhHHhhc
Confidence            48999999999999999998887443                          3333799999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         268 AKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       268 g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      | ||+...|.+|.||+++|-..||-+
T Consensus       190 G-AD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  190 G-ADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             c-CCCCCCCCCCCcHHHHHHhcCchH
Confidence            9 999999999999999999877754

>KOG0782|consensus

Probab=98.70  E-value=8.8e-08  Score=94.23  Aligned_cols=117  Identities=18%  Similarity=0.240  Sum_probs=94.0

Q ss_pred             HHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChH
Q psy4222         147 LRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYI  226 (367)
Q Consensus       147 L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~  226 (367)
                      |..|+..+|+-.+++.-        ..|.+. ..++.+..+.||+|++.|+-+||+|||+++...               
T Consensus       870 il~av~~~D~~klqE~h--------~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~e---------------  925 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETH--------LNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE---------------  925 (1004)
T ss_pred             HHHHHHhccHHHHHHHH--------hcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH---------------
Confidence            78899999987774443        234333 355666789999999999999999999987531               


Q ss_pred             HHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH--HHHhh
Q psy4222         227 ERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE--NYLHT  298 (367)
Q Consensus       227 ~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~--~ll~~  298 (367)
                       +        +++.|. .|+|+||-|+..++..+.++|++.| +.+...|..|.||-..|-+.|..+  .||+.
T Consensus       926 -l--------ld~~de-~get~lhkaa~~~~r~vc~~lvdag-asl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  926 -L--------LDMADE-TGETALHKAACQRNRAVCQLLVDAG-ASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             -H--------HHHHhh-hhhHHHHHHHHhcchHHHHHHHhcc-hhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence             1        345566 8999999999999999999999999 899999999999999998777655  45543

>KOG0818|consensus

Probab=98.63  E-value=1.5e-07  Score=91.30  Aligned_cols=92  Identities=26%  Similarity=0.335  Sum_probs=79.8

Q ss_pred             hhhHH-HHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222         141 SQELV-KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  219 (367)
Q Consensus       141 ~~~lt-~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~  219 (367)
                      .++++ .||-.++.|+++..        --|+..|++++.+....|.||||+||+.|+..-+++|+-.|+|         
T Consensus       130 ~~~LsrQLhasvRt~nlet~--------LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD---------  192 (669)
T KOG0818|consen  130 AKDLSKQLHSSVRTGNLETC--------LRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD---------  192 (669)
T ss_pred             HHHHHHHHHHHhhcccHHHH--------HHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC---------
Confidence            44555 69999999999999        6777889999777778899999999999999999999988877         


Q ss_pred             cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy4222         220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC  267 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~  267 (367)
                                       ++.+|. +|.||+-+|-..||.++.+.|++.
T Consensus       193 -----------------~~a~d~-~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  193 -----------------PGAQDS-SGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             -----------------CCCCCC-CCCcHHHHHHhcCchHHHHHHHHH
Confidence                             566677 999999999999999988877763

>KOG0506|consensus

Probab=98.51  E-value=1.2e-07  Score=91.75  Aligned_cols=90  Identities=22%  Similarity=0.227  Sum_probs=72.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCC
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP  223 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~  223 (367)
                      ...+.+|++.||+..+        +.+.-.|.+. ..+|.+.+|+||+||..|+++++++||+...-             
T Consensus       507 ~i~~~~aa~~GD~~al--------rRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv-------------  564 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSAL--------RRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKV-------------  564 (622)
T ss_pred             hhhhhhhhhcCCHHHH--------HHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcC-------------
Confidence            4579999999999999        4444556666 56788888999999999999999999986532             


Q ss_pred             ChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         224 SYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       224 ~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                                  ..+..|+ +|+|||--|..++|.+|+++|-+.-
T Consensus       565 ------------~~~~kDR-w~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  565 ------------DPDPKDR-WGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             ------------CCChhhc-cCCCcchHhHhcCcHHHHHHHHHHh
Confidence                        2455677 9999999999999999999988764

>PF13606 Ank_3: Ankyrin repeat

Probab=98.49  E-value=1.7e-07  Score=57.30  Aligned_cols=28  Identities=21%  Similarity=0.205  Sum_probs=26.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhcCCC
Q psy4222         184 CRYNALHVSTKAVNPAMTEMLLEIIGNP  211 (367)
Q Consensus       184 ~G~TpLh~Aa~~g~~~iv~~LL~~~~d~  211 (367)
                      +|+||||+||+.|+.+++++||+.|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4899999999999999999999999874

>KOG0705|consensus

Probab=98.46  E-value=4.2e-07  Score=89.80  Aligned_cols=50  Identities=28%  Similarity=0.288  Sum_probs=35.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         244 LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       244 ~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      .|.|+||+||..|++.+.++|+-+| +|+.++|.+|+|||.+|-+.|.-+.
T Consensus       660 ~grt~LHLa~~~gnVvl~QLLiWyg-~dv~~rda~g~t~l~yar~a~sqec  709 (749)
T KOG0705|consen  660 DGRTALHLAARKGNVVLAQLLIWYG-VDVMARDAHGRTALFYARQAGSQEC  709 (749)
T ss_pred             CCcchhhhhhhhcchhHHHHHHHhC-ccceecccCCchhhhhHhhcccHHH
Confidence            5677777777777777777777777 7777777777777777776665553

>KOG0506|consensus

Probab=98.41  E-value=2.1e-07  Score=89.98  Aligned_cols=86  Identities=26%  Similarity=0.261  Sum_probs=75.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy4222         182 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV  261 (367)
Q Consensus       182 d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv  261 (367)
                      +..+...+.+||+.|....++.+.-.+.|                          ++..|- +.+|+||+||..|++++|
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D--------------------------~~~~Dy-D~RTaLHvAAaEG~v~v~  555 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD--------------------------LETKDY-DDRTALHVAAAEGHVEVV  555 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc--------------------------cccccc-ccchhheeecccCceeHH
Confidence            44577889999999999999888777655                          566666 889999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         262 KRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       262 ~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++||+..+.+++.+|.+|+|||+-|...+|.+.
T Consensus       556 kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v  588 (622)
T KOG0506|consen  556 KFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEV  588 (622)
T ss_pred             HHHHHHHcCCCChhhccCCCcchHhHhcCcHHH
Confidence            999999889999999999999999998877664

>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []

Probab=98.40  E-value=1.6e-07  Score=62.79  Aligned_cols=44  Identities=20%  Similarity=0.353  Sum_probs=37.4

Q ss_pred             cceEEecccccCCCCCCccCccccccccHHHHHHHHHHcccccccCCCCHHHHHHH
Q psy4222          36 IYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF   91 (367)
Q Consensus        36 ~~y~v~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~k~~k~ar~k~F~~~~~a~~~   91 (367)
                      .||+|+.+            .+.+||++|.+|+..++..+++++|+|.+.++|+.|
T Consensus         1 k~YaV~~G------------~~~GIy~~W~~~~~~v~g~~ga~~k~F~t~~eA~~~   44 (44)
T PF01693_consen    1 KYYAVFNG------------RQPGIYTSWAECKKQVSGYPGAIYKSFKTREEAEEF   44 (44)
T ss_dssp             -EEEEECS------------SS-EEECCHHHHHHHCTT-TT-EEEEESSHHHHHHH
T ss_pred             CEEEEEeC------------CCCCeECCHHHHHHHhCCCCCceECCcCCHHHHhhC
Confidence            38999997            345999999999999999999999999999999986

This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.

>KOG3609|consensus

Probab=98.39  E-value=7e-07  Score=92.23  Aligned_cols=126  Identities=18%  Similarity=0.181  Sum_probs=98.5

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  219 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~  219 (367)
                      ..++...+..|++.||.-.|++++...-    . .....+.+|--|+++||+|..+.+.+++++|+++.-..  .++++.
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~----~-~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--gdALL~   94 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKA----V-SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--GDALLL   94 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhcc----c-cccchhccChHhhhceecccccccHHHHHHHhcCcccc--chHHHH
Confidence            3445567999999999999988885432    1 11222456777999999999999999999999986554  667777


Q ss_pred             cCCCChHHHHHHHHhcCCCC-----------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q psy4222         220 SDTPSYIERSDILLDLYVNT-----------PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTS  273 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~-----------~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~  273 (367)
                      +...+..+++++++.+....           ..-..+-|||.+||..++.||+++||.+| +.+.
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg-~~i~  158 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRG-HCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcC-CCCC
Confidence            88889999999999774332           11125679999999999999999999999 5543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.32  E-value=9e-07  Score=55.23  Aligned_cols=30  Identities=17%  Similarity=0.206  Sum_probs=27.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhcCCCCC
Q psy4222         184 CRYNALHVSTKAVNPAMTEMLLEIIGNPAF  213 (367)
Q Consensus       184 ~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~  213 (367)
                      +|+||||+|+..|+.+++++||++|++...
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            489999999999999999999999988543

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522|consensus

Probab=98.29  E-value=1.4e-06  Score=85.58  Aligned_cols=80  Identities=26%  Similarity=0.388  Sum_probs=63.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy4222         188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC  267 (367)
Q Consensus       188 pLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~  267 (367)
                      |||+++.....+-++.++.....                        .-++..|. .|+||||+|+..|+.+.+++|+..
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~------------------------~~id~~D~-~g~TpLhlAV~Lg~~~~a~~Ll~a   77 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVS------------------------LVIDRRDP-PGRTPLHLAVRLGHVEAARILLSA   77 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhh------------------------ceeccccC-CCCccHHHHHHhcCHHHHHHHHhc
Confidence            58888887766555544332111                        12566677 889999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         268 AKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       268 g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      | |++.++|++|++|||-|+..|+-.
T Consensus        78 ~-Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   78 G-ADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             C-CCccccccccccHHHHHHHcCCHH
Confidence            9 999999999999999999877653

>KOG0522|consensus

Probab=98.10  E-value=6.7e-06  Score=81.00  Aligned_cols=90  Identities=12%  Similarity=0.107  Sum_probs=70.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCC
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  224 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~  224 (367)
                      -+||+++...+.+.+.+.+..      +.+... ...|..|.||||+|+..|+.+.++.||..+++              
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~------~~~~~i-d~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad--------------   80 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLA------KVSLVI-DRRDPPGRTPLHLAVRLGHVEAARILLSAGAD--------------   80 (560)
T ss_pred             cccchhhhccchhhHHHHHhh------hhhcee-ccccCCCCccHHHHHHhcCHHHHHHHHhcCCC--------------
Confidence            358899988888887544422      111222 34577789999999999999999999998876              


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         225 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       225 ~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                                  +..+++ .||+|||-|+..|+.+++..+|.+-
T Consensus        81 ------------v~~kN~-~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   81 ------------VSIKNN-EGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             ------------cccccc-ccccHHHHHHHcCCHHHHHHHHHHh
Confidence                        445566 9999999999999999988777664

>KOG0705|consensus

Probab=98.01  E-value=1.2e-05  Score=79.81  Aligned_cols=82  Identities=20%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcC---------CCCCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcC
Q psy4222         188 ALHVSTKAVNPAMTEMLLEIIG---------NPAFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFG  256 (367)
Q Consensus       188 pLh~Aa~~g~~~iv~~LL~~~~---------d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g  256 (367)
                      -|.-|+.......+-+||.+|.         +.+...++|-++..+++.+.++|+-+|+++.  |. .|+|+|.||-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda-~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA-HGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc-CCchhhhhHhhcc
Confidence            3556777778888888998874         4566788999999999999999999998887  55 9999999999999


Q ss_pred             CHHHHHHHHhCCCCC
Q psy4222         257 SVECVKRLIGCAKIQ  271 (367)
Q Consensus       257 ~~~vv~~LL~~g~ad  271 (367)
                      .-+|+.+||.+| +-
T Consensus       706 sqec~d~llq~g-cp  719 (749)
T KOG0705|consen  706 SQECIDVLLQYG-CP  719 (749)
T ss_pred             cHHHHHHHHHcC-CC
Confidence            999999999999 54

>KOG0783|consensus

Probab=97.96  E-value=4.4e-06  Score=85.86  Aligned_cols=61  Identities=18%  Similarity=0.165  Sum_probs=54.3

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCC-CCCcHHHHHHHcCCHHHHHHHHhhcCC
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEG-CRYNALHVSTKAVNPAMTEMLLEIIGN  210 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~~~d  210 (367)
                      .-+.++||.|+..|....+        +||+++|.+. +++|. .||||||-|..+|+++++-+||.+|..
T Consensus        50 ~~GR~alH~~~S~~k~~~l--------~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   50 RYGRTALHIAVSENKNSFL--------RWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             hhccceeeeeeccchhHHH--------HHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            4456899999999999999        9999999998 56655 599999999999999999999999865

>KOG0521|consensus

Probab=97.90  E-value=9.3e-06  Score=85.88  Aligned_cols=83  Identities=25%  Similarity=0.300  Sum_probs=74.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy4222         183 GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVK  262 (367)
Q Consensus       183 ~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~  262 (367)
                      ..|.|+||.|+..|..-++++||+.|++                          +|..|. .|+||||.+...|+...+.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~--------------------------vn~~d~-~g~~plh~~~~~g~~~~~~  706 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD--------------------------VNALDS-KGRTPLHHATASGHTSIAC  706 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc--------------------------chhhhc-cCCCcchhhhhhcccchhh
Confidence            3478999999999999999999999877                          666677 8999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         263 RLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       263 ~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      .|+++| ++.++.+.+|++|+++|....+.+
T Consensus       707 ~ll~~~-a~~~a~~~~~~~~l~~a~~~~~~d  736 (785)
T KOG0521|consen  707 LLLKRG-ADPNAFDPDGKLPLDIAMEAANAD  736 (785)
T ss_pred             hhcccc-ccccccCccCcchhhHHhhhcccc
Confidence            999999 999999999999999997554444

>KOG0520|consensus

Probab=97.90  E-value=1.1e-05  Score=85.17  Aligned_cols=122  Identities=20%  Similarity=0.209  Sum_probs=76.1

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccC
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  221 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~  221 (367)
                      .+++-||.++..+....+.+++    ++   .|..+ ...|.+|...+|+ |..++.+++-+|+.-.             
T Consensus       573 r~~lllhL~a~~lyawLie~~~----e~---~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~-------------  630 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVI----EW---AGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISAD-------------  630 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHh----cc---cccCc-hhhcccCCChhhH-hhhcCCceeEEEEeec-------------
Confidence            3456666666666666664444    21   13222 2335555556666 3333444433332210             


Q ss_pred             CCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-----CCCCCCCCCCChHHHHHhcCCcH--HH
Q psy4222         222 TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK-----IQTSVRNKEGKTPLDSSSGLDLL--EN  294 (367)
Q Consensus       222 ~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~-----ad~~~~n~~G~TPL~iA~~~g~~--~~  294 (367)
                                  ...++++|. .||||||||+.+|+..++..|++.|.     .|++..+-.|.|+-.+|...|+-  ..
T Consensus       631 ------------~~ai~i~D~-~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~  697 (975)
T KOG0520|consen  631 ------------GVAIDIRDR-NGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAG  697 (975)
T ss_pred             ------------ccccccccC-CCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHH
Confidence                        123788898 99999999999999999999998873     13444556799999999876653  34


Q ss_pred             HHhh
Q psy4222         295 YLHT  298 (367)
Q Consensus       295 ll~~  298 (367)
                      +|..
T Consensus       698 ~lse  701 (975)
T KOG0520|consen  698 YLSE  701 (975)
T ss_pred             HHhh
Confidence            5544

>KOG0511|consensus

Probab=97.84  E-value=5.9e-05  Score=71.59  Aligned_cols=78  Identities=23%  Similarity=0.230  Sum_probs=62.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy4222         187 NALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG  266 (367)
Q Consensus       187 TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~  266 (367)
                      --|-.||+.|..+.|++|++.|.+                          +|..|+ ....||.+|+..||.++|++||+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn--------------------------VN~vD~-fD~spL~lAsLcGHe~vvklLLe   90 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN--------------------------VNAVDR-FDSSPLYLASLCGHEDVVKLLLE   90 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC--------------------------cchhhc-ccccHHHHHHHcCcHHHHHHHHH
Confidence            458899999999999999997755                          666688 88999999999999999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         267 CAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       267 ~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      +| |--+--.-+|... |+++-...+.
T Consensus        91 nG-AiC~rdtf~G~RC-~YgaLnd~IR  115 (516)
T KOG0511|consen   91 NG-AICSRDTFDGDRC-HYGALNDRIR  115 (516)
T ss_pred             cC-CcccccccCcchh-hhhhhhHHHH
Confidence            99 5544434466655 5666555555

>KOG0782|consensus

Probab=97.84  E-value=2.9e-05  Score=76.93  Aligned_cols=94  Identities=19%  Similarity=0.197  Sum_probs=75.1

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCC-ccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDF-PTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  218 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~-~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~  218 (367)
                      .++..+.||+|+..|+-++|        +|++++|.. .....|..|.|+||-||..++..++++|++.|+.        
T Consensus       896 ~~~~~sllh~a~~tg~~eiv--------kyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagas--------  959 (1004)
T KOG0782|consen  896 GPDHCSLLHYAAKTGNGEIV--------KYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGAS--------  959 (1004)
T ss_pred             CcchhhHHHHHHhcCChHHH--------HHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh--------
Confidence            34556889999999999999        666665521 1123367899999999999999999999998865        


Q ss_pred             ccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         219 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                                        +-..|. .|.||-.-|-+.|..++.-||-++.
T Consensus       960 ------------------l~ktd~-kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  960 ------------------LRKTDS-KGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             ------------------heeccc-CCCChHHHHHhcCCchHHHHHhhhh
Confidence                              333345 8999999999999999999997764

>KOG0511|consensus

Probab=97.75  E-value=8.4e-05  Score=70.60  Aligned_cols=58  Identities=21%  Similarity=0.218  Sum_probs=53.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCC
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN  210 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d  210 (367)
                      .-.|..||+.||++.|        ++|++.|.+. +..|...+.||.+|+..||.++|++||++|+-
T Consensus        37 f~elceacR~GD~d~v--------~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRV--------RYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHH--------HHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            4579999999999999        9999988777 78899999999999999999999999999973

>KOG2384|consensus

Probab=97.65  E-value=0.00017  Score=62.64  Aligned_cols=58  Identities=22%  Similarity=0.143  Sum_probs=53.5

Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHH
Q psy4222         237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENY  295 (367)
Q Consensus       237 ~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~l  295 (367)
                      +|..|. .|||||+.|+..|+.++|.+|+.+|.+.+.+.|..|.+++.+|-..|+.+.+
T Consensus         5 in~rD~-fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fv   62 (223)
T KOG2384|consen    5 INARDA-FGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFV   62 (223)
T ss_pred             ccchhh-hcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHH
Confidence            677788 9999999999999999999999999889999999999999999999887643

>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]

Probab=97.59  E-value=7.4e-05  Score=65.91  Aligned_cols=46  Identities=20%  Similarity=0.385  Sum_probs=43.4

Q ss_pred             cceEEecccccCCCCCCccCccccccccHHHHHHHHHHcccccccCCCCHHHHHHHHh
Q psy4222          36 IYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAY   93 (367)
Q Consensus        36 ~~y~v~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~k~~k~ar~k~F~~~~~a~~~~~   93 (367)
                      -||||..+            +.++||++|.||.+.|+...+|++|.|.++|+|+.|++
T Consensus         6 nyYaVk~G------------R~tGIyktW~Ec~~qVkGy~ga~YKsf~s~EeA~a~~~   51 (225)
T COG3341           6 NYYAVKKG------------RKTGIYKTWDECEKQVKGYPGAKYKSFKSYEEAEAYCE   51 (225)
T ss_pred             ceeEEecc------------cccceeccHHHHHHHhcCCCcccccccccHHHHHHHhc
Confidence            39999998            45699999999999999999999999999999999999

>KOG2384|consensus

Probab=97.52  E-value=0.0002  Score=62.14  Aligned_cols=71  Identities=18%  Similarity=0.102  Sum_probs=59.9

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhhc-CCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCC
Q psy4222         179 ILHEGCRYNALHVSTKAVNPAMTEMLLEII-GNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS  257 (367)
Q Consensus       179 ~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~-~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~  257 (367)
                      +.+|..|||+|+.|+..|+.+.|.||+.+| +.                          +.+.|. .|.+++.+|-+.|+
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~--------------------------vgv~d~-ssldaaqlaek~g~   58 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF--------------------------VGVTDE-SSLDAAQLAEKGGA   58 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCccc--------------------------cccccc-ccchHHHHHHhcCh
Confidence            677999999999999999999999999998 33                          455567 89999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCC
Q psy4222         258 VECVKRLIGCAKIQTSVRNK  277 (367)
Q Consensus       258 ~~vv~~LL~~g~ad~~~~n~  277 (367)
                      .++|+.|-+.- .+-...++
T Consensus        59 ~~fvh~lfe~~-~ets~p~n   77 (223)
T KOG2384|consen   59 QAFVHSLFEND-RETSHPMN   77 (223)
T ss_pred             HHHHHHHHHHh-ccCCCccc
Confidence            99999998876 55544443

>KOG2505|consensus

Probab=97.32  E-value=0.00028  Score=69.31  Aligned_cols=61  Identities=26%  Similarity=0.364  Sum_probs=49.9

Q ss_pred             HHHHHHhcCCCCCCC-------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcC
Q psy4222         228 RSDILLDLYVNTPDK-------ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGL  289 (367)
Q Consensus       228 ~v~~Ll~~~~n~~d~-------~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~  289 (367)
                      .+++|.+.++..+-.       ..-.|+||+|+..|..++|.+||+.| ||+.++|..|.||++++...
T Consensus       406 ~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  406 SIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             HHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccccH
Confidence            556666666555311       14579999999999999999999999 99999999999999999843

>smart00248 ANK ankyrin repeats

Probab=97.22  E-value=0.00058  Score=39.25  Aligned_cols=29  Identities=38%  Similarity=0.508  Sum_probs=25.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q psy4222         244 LNETPLHFAAKFGSVECVKRLIGCAKIQTS  273 (367)
Q Consensus       244 ~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~  273 (367)
                      .|.||||+|+..|+.+++++|+.++ .+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~-~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKG-ADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence            3789999999999999999999998 5553

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0521|consensus

Probab=97.20  E-value=0.00034  Score=74.31  Aligned_cols=96  Identities=18%  Similarity=0.168  Sum_probs=78.9

Q ss_pred             CCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC
Q psy4222         134 SPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF  213 (367)
Q Consensus       134 ~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~  213 (367)
                      ..+..+-..+-+.||.|+..|..-.+        ++|++.|++. +..|..|+||||.+...|+...+..|+++++++..
T Consensus       647 ~n~~~~~~~~~s~lh~a~~~~~~~~~--------e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a  717 (785)
T KOG0521|consen  647 ENWPVVLCIGCSLLHVAVGTGDSGAV--------ELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADPNA  717 (785)
T ss_pred             hccchhhhcccchhhhhhccchHHHH--------HHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhccccccccc
Confidence            34444444456789999999999999        9999999996 78899999999999999999999999999987543


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI  265 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL  265 (367)
                      .                          +. .|.+||++|....+.+++-+|.
T Consensus       718 ~--------------------------~~-~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  718 F--------------------------DP-DGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             c--------------------------Cc-cCcchhhHHhhhccccHHHHHh
Confidence            3                          34 7899999998887777765543

>smart00248 ANK ankyrin repeats

Probab=96.53  E-value=0.0046  Score=35.23  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=24.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhcCC
Q psy4222         184 CRYNALHVSTKAVNPAMTEMLLEIIGN  210 (367)
Q Consensus       184 ~G~TpLh~Aa~~g~~~iv~~LL~~~~d  210 (367)
                      .|.||||+|+..++.+++++|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            378999999999999999999998764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.45  E-value=0.014  Score=52.31  Aligned_cols=108  Identities=15%  Similarity=0.182  Sum_probs=75.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC---------CCCCccc
Q psy4222         146 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG---------NPAFTNL  216 (367)
Q Consensus       146 ~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~---------d~~~~~~  216 (367)
                      .|-.|+..-|++.+..++        ...        +.-.++|-+|...+..+++-+||..-.         .+++...
T Consensus       156 sledAV~AsN~~~i~~~V--------tdK--------kdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydi  219 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLV--------TDK--------KDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDI  219 (284)
T ss_pred             cHHHHHhhcCHHHHHHHh--------cch--------HHHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhH
Confidence            378899999999984333        222        223578888888888999999988642         1222222


Q ss_pred             ccccC-CCChHHHHHHHHhcC-CCCCC----CCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy4222         217 LYDSD-TPSYIERSDILLDLY-VNTPD----KALNETPLHFAAKFGSVECVKRLIGCAKI  270 (367)
Q Consensus       217 ~~~~~-~~~~~~~v~~Ll~~~-~n~~d----~~~g~TpLH~Aa~~g~~~vv~~LL~~g~a  270 (367)
                      -|.-. -.....++++.+..| ++++.    -+.|.|-|--|.++++.+++.+||++| |
T Consensus       220 eY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~G-A  278 (284)
T PF06128_consen  220 EYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYG-A  278 (284)
T ss_pred             HHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcC-c
Confidence            22222 234556888899888 33331    248999999999999999999999999 5

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG3752|consensus

Probab=96.37  E-value=0.0034  Score=60.07  Aligned_cols=50  Identities=20%  Similarity=0.259  Sum_probs=45.4

Q ss_pred             CCccceEEecccccCCCCCCccCccccccccHHHHHHHHHHcccccccCCCCHHHHHHHHhc
Q psy4222          33 EEGIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYH   94 (367)
Q Consensus        33 ~~~~~y~v~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~k~~k~ar~k~F~~~~~a~~~~~~   94 (367)
                      ....||+|+.+            ...+||.+|+||+.+++....+|.|+|...++|..|...
T Consensus        24 ~~~~fyava~g------------r~~Gvy~tw~e~k~qv~~y~~~~~kkf~t~~eA~sf~~~   73 (371)
T KOG3752|consen   24 STRKFYAVARG------------RKTGVYSTWDECKEQVDGYGNARYKKFTTEEEAQSFVRI   73 (371)
T ss_pred             cccceeeeecc------------cccccccchHHHHHHHhhcCccchhccccHHHHHHHhcC
Confidence            35789999998            344899999999999999999999999999999999994

>KOG0520|consensus

Probab=96.01  E-value=0.0059  Score=65.18  Aligned_cols=68  Identities=13%  Similarity=0.101  Sum_probs=51.6

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCH
Q psy4222         179 ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSV  258 (367)
Q Consensus       179 ~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~  258 (367)
                      .++|..||||||||+..|+..++..|+..++++++..-                    ... +.-.|.|+--+|...|+.
T Consensus       635 ~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~td--------------------ps~-~~p~g~ta~~la~s~g~~  693 (975)
T KOG0520|consen  635 DIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTD--------------------PSP-ETPGGKTAADLARANGHK  693 (975)
T ss_pred             ccccCCCCcccchHhhcCHHHHHHHHHHhccccccccC--------------------CCC-CCCCCCchhhhhhccccc
Confidence            67899999999999999999999999999987653320                    111 222678888888888887


Q ss_pred             HHHHHHHhC
Q psy4222         259 ECVKRLIGC  267 (367)
Q Consensus       259 ~vv~~LL~~  267 (367)
                      .+.-+|-+.
T Consensus       694 gia~~lse~  702 (975)
T KOG0520|consen  694 GIAGYLSEK  702 (975)
T ss_pred             chHHHHhhh
Confidence            777666554

>KOG3609|consensus

Probab=94.89  E-value=0.11  Score=54.82  Aligned_cols=102  Identities=21%  Similarity=0.150  Sum_probs=79.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhcCC---------CCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcC
Q psy4222         186 YNALHVSTKAVNPAMTEMLLEIIGN---------PAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG  256 (367)
Q Consensus       186 ~TpLh~Aa~~g~~~iv~~LL~~~~d---------~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g  256 (367)
                      .--...|+..|+...|+..|+....         +-...+++.+..+.+.+++++|++..+..      .-+|-+|+..|
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~------gdALL~aI~~~   99 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE------GDALLLAIAVG   99 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc------chHHHHHHHHH
Confidence            3456789999999999998887543         33456667778899999999999988766      34789999999


Q ss_pred             CHHHHHHHHhCCCCCC----------CCCCCCCChHHHHHhcCCcHHH
Q psy4222         257 SVECVKRLIGCAKIQT----------SVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       257 ~~~vv~~LL~~g~ad~----------~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      .+++|++|+.+. ...          ...-..+.||+.+||..++.|.
T Consensus       100 ~v~~VE~ll~~~-~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEi  146 (822)
T KOG3609|consen  100 SVPLVELLLVHF-VDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEI  146 (822)
T ss_pred             HHHHHHHHHhcc-cccchhccccccCcccCCCCccHHHHHHHhcchHH
Confidence            999999999986 222          1333467899999999988874

>KOG2505|consensus

Probab=90.41  E-value=0.57  Score=46.75  Aligned_cols=50  Identities=18%  Similarity=0.291  Sum_probs=41.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLL  205 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL  205 (367)
                      -|+||+|+.+|+-++|        .+|+..|.+| ..+|+.|.||..+++   +-++=..++
T Consensus       431 sT~LH~aa~qg~~k~v--------~~~Leeg~Dp-~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCV--------KYFLEEGCDP-STKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             chHHHHHHhcchHHHH--------HHHHHhcCCc-hhcccCCCCcccccc---cHHHHHHHH
Confidence            3789999999999999        9999999999 588999999998887   444444444

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=82.18  E-value=2.6  Score=31.23  Aligned_cols=48  Identities=19%  Similarity=0.103  Sum_probs=39.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy4222         187 NALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG  266 (367)
Q Consensus       187 TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~  266 (367)
                      ..|..|...|+.+|++.+++.+.                                  .....|..|+..-+.+++++|++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~----------------------------------~~~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK----------------------------------PDNDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc----------------------------------cHHHHHHHHHHHhhHHHHHHHHH
Confidence            56899999999999999987542                                  12457899999999999999998


Q ss_pred             CC
Q psy4222         267 CA  268 (367)
Q Consensus       267 ~g  268 (367)
                      .-
T Consensus        54 ~y   55 (76)
T PF11929_consen   54 NY   55 (76)
T ss_pred             hc
Confidence            74

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-05
2etb_A	256	Transient receptor potential cation channel subfam	5e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-04
2pnn_A	273	Transient receptor potential cation channel subfa	4e-06
2pnn_A	273	Transient receptor potential cation channel subfa	3e-05
2rfa_A	232	Transient receptor potential cation channel subfa	4e-06
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-05

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 56.2 bits (135), Expect = 4e-09
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 18/128 (14%)

Query: 178 TILHEGCRYNALHVSTKAVNPAMTEMLLEII---------GNPAFTNLLYDSDTPSYIER 228
           TILH     + +   + A    +  ++  I+         G     +   D +       
Sbjct: 203 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262

Query: 229 SDILLDLY-----VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTP 282
            + L   +     +N  D    +T L+ AA+ G++  V  L+   A     + NK G  P
Sbjct: 263 LENLDLKWIIANMLNAQDSN-GDTCLNIAARLGNISIVDALLDYGADP--FIANKSGLRP 319

Query: 283 LDSSSGLD 290
           +D  +GL+
Sbjct: 320 VDFGAGLE 327

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 49.3 bits (117), Expect = 9e-07
 Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 29/180 (16%)

Query: 158 DVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL- 216
           D+      +P  ++ +   P +     +        + + P + EM   +  + +  N  
Sbjct: 33  DLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSE 92

Query: 217 LYDSDTPSY----------IERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG 266
              S+              +  +     L +N P      TPLH+     ++E VK L+ 
Sbjct: 93  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 152

Query: 267 CAKIQTSVRNKEGKTPL----------DSSSGLDLLENYLHTKLLDTVAAKKDETNGNTV 316
                    +  G++ L          DS +   LL+      L   +   +D     T+
Sbjct: 153 -HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD-----YLYPCLIL-EDS-MNRTI 204

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 49.7 bits (120), Expect = 6e-08
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSG---LDLL 292
           +N PDK  + TPL  A   G V CVK L+   A    +V+  +G T  +++       LL
Sbjct: 66  INAPDKH-HITPLLSAVYEGHVSCVKLLLSKGADK--TVKGPDGLTAFEATDNQAIKALL 122

Query: 293 E 293
           +
Sbjct: 123 Q 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 13/84 (15%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
           VN   +     PLH+AA  G +E ++ L+  G A I     +K   TPL S+      E 
Sbjct: 33  VNRTLEG-GRKPLHYAADCGQLEILEFLLLKG-ADIN--APDKHHITPLLSAV----YEG 84

Query: 295 YLHT-KLLDTVAAKKDETN--GNT 315
           ++   KLL +  A K      G T
Sbjct: 85  HVSCVKLLLSKGADKTVKGPDGLT 108

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.0 bits (100), Expect = 4e-05
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           +    +A K G ++ VK  +     +  +   + G+ PL
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPL 44

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.1 bits (126), Expect = 7e-08
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSSGLDLLENY 295
           VN  DK    T LH+A   G+   +  L+   A +    +N +G++ LD +         
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV--DAQNIKGESALDLAK----QRKN 222

Query: 296 LHT-KLLDTVAAKKDETN 312
           +     L      K   N
Sbjct: 223 VWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.7 bits (120), Expect = 4e-07
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           V+     LN TPLH+A + G +  V +L+   A    S+ + EG + +
Sbjct: 68  VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP--SLIDGEGCSCI 113

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 236 YVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           ++   D   +   +  A ++G  E  + L+     ++    +KE  T L
Sbjct: 1   HMTHIDDY-STWDIVKATQYGIYERCRELVEAGYDVRQ--PDKENVTLL 46

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 17/87 (19%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSS----GLDL 291
            +  D     + +H AA+FG    V  LI     +   + ++ G TPL  ++     +D 
Sbjct: 102 PSLIDGE-GCSCIHLAAQFGHTSIVAYLIAKGQDV--DMMDQNGMTPLMWAAYRTHSVDP 158

Query: 292 LENYLHTKLLDTVAA---KKDETNGNT 315
                 T+LL T        D+ + NT
Sbjct: 159 ------TRLLLTFNVSVNLGDKYHKNT 179

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           V  PDK  N T LH+AA    ++ VK  I   A +   +      TPL
Sbjct: 35  VRQPDKE-NVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPL 80

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP----SYIERSDILLDLYVNTPDKA 243
            +  +     P   + L    G+  +      SDT     +   R+ ++   YV    ++
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYIT--DMSDTNWWKGTSKGRTGLIPSNYVAEQAES 72

Query: 244 LNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
             + PLH AAK G++  ++  +     +  +  +K G T L
Sbjct: 73  -IDNPLHEAAKRGNLSWLRECLDNRVGV--NGLDKAGSTAL 110

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
           VN  DKA   T L++A   G  + V+ L     I+ + +NK G T L
Sbjct: 99  VNGLDKA-GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
           +N  +K L +T LH AA  G  + V+ L+   A+    +RN E K   D ++        
Sbjct: 133 LNQQNK-LGDTALHAAAWKGYADIVQLLLAKGART--DLRNIEKKLAFDMATN----AAC 185

Query: 296 LHT-KLLDTVAAKKDETNGNT 315
               K      A +  +N   
Sbjct: 186 ASLLKKKQGTDAVRTLSNAED 206

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.7 bits (125), Expect = 9e-08
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 44/181 (24%)

Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
           S + V L  L++ G  A V+    ++        D  + +HE  R           +   
Sbjct: 137 SWDCVNL--LLQHG--ASVQP---ES--------DLASPIHEAARRG---------HVEC 172

Query: 201 TEMLLEIIGNP-AFTNLLYDSDTP-------SYIERSDILLDLYVNTPDKALN-ETPLHF 251
              L+   GN     +      TP               LL+   +  ++    ++PLH 
Sbjct: 173 VNSLIAYGGNIDHKIS---HLGTPLYLACENQQRACVKKLLESGAD-VNQGKGQDSPLHA 228

Query: 252 AAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDE 310
             +  S E    L+   A  Q   +N EGK P++        E+ L    L+   A   +
Sbjct: 229 VVRTASEELACLLMDFGADTQ--AKNAEGKRPVELVP----PESPLAQLFLEREGASLPK 282

Query: 311 T 311
            
Sbjct: 283 P 283

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           VN      + +PLH A   G + CVK L+   A++       +  TPL
Sbjct: 85  VNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVN--GVTADWHTPL 129

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           VN        TPL  A   GS +CV  L+  G A +Q      +  +P+
Sbjct: 118 VNGVTAD-WHTPLFNACVSGSWDCVNLLLQHG-ASVQP---ESDLASPI 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 219 DSDTPSYI-ERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRN 276
           D   P+   +   I L       D   + +P+H AA  G    ++ LI     +      
Sbjct: 32  DGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI--IT 89

Query: 277 KEGKTPL 283
            +  +PL
Sbjct: 90  ADHVSPL 96

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
           +N  ++     PLH+A  +G  +  + L+   A +  S+ NK G+ P+D +         
Sbjct: 98  INAVNE-HGNVPLHYACFWGQDQVAEDLVANGALV--SICNKYGEMPVDKAKA----PLR 150

Query: 296 LHT-KLLDTVAAKKDETN 312
               +  + +    +   
Sbjct: 151 ELLRERAEKMGQNLNRIP 168

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.1 bits (108), Expect = 6e-06
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           +N  D     +PLH+A + G    V+ LI   A+I   V N+   TPL
Sbjct: 32  LNQGDDH-GFSPLHWACREGRSAVVEMLIMRGARIN--VMNRGDDTPL 76

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 44.7 bits (107), Expect = 8e-06
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           +N  ++  ++TPLH AA  G  + V++L+   A I  +  N+ G  PL
Sbjct: 65  INVMNRG-DDTPLHLAASHGHRDIVQKLLQYKADI--NAVNEHGNVPL 109

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.0 bits (100), Expect = 8e-05
 Identities = 5/37 (13%), Positives = 14/37 (37%)

Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
             +    + G+   V+  +   +   +  +  G +PL
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPL 43

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 39/167 (23%)

Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
             E+ +   L+  G   D      D        G+  T LH  C              A 
Sbjct: 57  QPEIAEA--LLGAG--CDPELR--DF------RGN--TPLHLACEQG---------CLAS 93

Query: 201 TEMLLEIIGNPAFTNLL----YDSDTP-------SYIERSDILLDL--YVNTPDKALNET 247
             +L +    P   ++L    Y+  T         Y+   ++L+ L   VN  +     T
Sbjct: 94  VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 153

Query: 248 PLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLE 293
            LH A    + + V  L+ C A +  +    +G +P   + G     
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGADV--NRVTYQGYSPYQLTWGRPSTR 198

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           +N  +  L +TPLH A      E  + L+G        +R+  G TPL
Sbjct: 38  LNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP--ELRDFRGNTPL 82

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 26/155 (16%)

Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
             + +K   L ++G  A+V                  T L +              +  +
Sbjct: 117 KVKALKF--LYKRG--ANVNLRRKTKEDQERLRKGGATALMDAAEKG---------HVEV 163

Query: 201 TEMLLEIIG-------NPAFTNLLY---DSDTPSYIERSDILLDLY--VNTPDKALNETP 248
            ++LL+ +G       N     L++    SD       + +LLD    VN   +   +TP
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER-GKTP 222

Query: 249 LHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
           L  A +   +  V+RL+    I+ +  + +GKT L
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.9 bits (110), Expect = 9e-06
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           VN  ++    TPLH A +    + V+ L+   A     +R K G TP 
Sbjct: 31  VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPF 76

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
                K    TP   AA  GSV+ +K  +   A +  +  +  G T  
Sbjct: 65  PVLRKK-NGATPFLLAAIAGSVKLLKLFLSKGADV--NECDFYGFTAF 109

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 12/57 (21%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKI--------QTSVRNKEGKTPL 283
           VN  D     T    AA +G V+ +K L   G A +              K G T L
Sbjct: 98  VNECDF-YGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATAL 152

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.8 bits (115), Expect = 4e-07
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           ++    + ++  L  AA  G VE V++L+   A    +  N+ G+ P+
Sbjct: 5   IHMLGGS-SDAGLATAAARGQVETVRQLLEAGADP--NALNRFGRRPI 49

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.4 bits (106), Expect = 6e-06
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            N  D A    P+H AA+ G ++ +  L    A++   V +  G+ P+
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL--DVCDAWGRLPV 115

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
           +N  D     TPL +A +   V+CV+ L+   A +  +     G TP+D +        Y
Sbjct: 95  INIYDWN-GGTPLLYAVRGNHVKCVEALLARGADL--TTEADSGYTPMDLAV----ALGY 147

Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
               ++++    K  ++N     
Sbjct: 148 RKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            +   K   E+ L  A+  G  + V  L+     I   + +  G TPL
Sbjct: 62  PHILAKE-RESALSLASTGGYTDIVGLLLERDVDIN--IYDWNGGTPL 106

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 247 TPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
             +H  A  G ++ +K  +  G   +  +  ++ G TPL
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLV--NKPDERGFTPL 40

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           VN PD+    TPL +A+ FG +E V+ L+  G A     +  KE ++ L
Sbjct: 29  VNKPDER-GFTPLIWASAFGEIETVRFLLEWG-ADP--HILAKERESAL 73

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 35/147 (23%), Positives = 48/147 (32%), Gaps = 31/147 (21%)

Query: 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYN---ALHVSTKAVNPA 199
           + VKL  L+E G  ADV      + R   + G F       C Y     L ++       
Sbjct: 104 QCVKL--LVENG--ADV------HLR---ACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150

Query: 200 MTEMLLEIIGNPAFTNLLYDSD--TPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS 257
           +   LLE    PA      DS   T          L   V   D +   + L      G 
Sbjct: 151 VVTYLLENPHQPASLEAT-DSLGNTV---------LHALVMIADNSPENSALVIHMYDGL 200

Query: 258 VECVKRLIG-CAKIQTSVRNKEGKTPL 283
           ++   RL          + N +G TPL
Sbjct: 201 LQMGARLCPTVQLE--EISNHQGLTPL 225

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
           ++  D     T LH AA +   E V+ L+  G A I   V ++ G T L+
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADI--EVEDERGLTALE 148

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 231 ILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
               +  +   +   ETP   AA+    + + +L+    +     ++ G+T L
Sbjct: 32  PSSYIAADVVSE--YETPWWTAARKADEQALSQLLEDRDV--DAVDENGRTAL 80

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           V+  D+    T L F A  GS +CV+ L   G A +      + G T L
Sbjct: 69  VDAVDEN-GRTALLFVAGLGSDKCVRLLAEAG-ADLD-HRDMRGGLTAL 114

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           +N P+     TPLH A +  +   ++ L+   A    + R   G+TPL
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP--TARMYGGRTPL 229

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 236 YVNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
           Y++  +  L +T LH AA  G    V++L    A +   V  + G T L
Sbjct: 37  YLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHTAL 82

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 246 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           +T LH A        +  L+          ++N  G+T L
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 29/156 (18%), Positives = 41/156 (26%), Gaps = 29/156 (18%)

Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHV--------- 191
               V+   L   G  A V     +        G   T LH  CR  A            
Sbjct: 57  EASTVEK--LYAAG--AGVLVA--ER------GGH--TALHLACRVRAHTCACVLLQPRP 102

Query: 192 -STKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDL--YVNTPDKALNETP 248
              +  +        +   + +      DS      E      D    +   +     TP
Sbjct: 103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD-GHTP 161

Query: 249 LHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           LH A      E V+ L    A +        G+TPL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPL 196

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 4/52 (7%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSS 287
                     TPL  A    +    + L    A         +  +P  SS 
Sbjct: 218 PTARMYG-GRTPLGSALLRPNPILARLLRAHGAPE--PEDGGDKLSPCSSSG 266

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
           ++  D     T LH AA +   E V+ L+  G A I   V ++ G T L+
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADI--EVEDERGLTALE 149

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 245 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
            ETP   AA+    + + +L+    +     ++ G+T L
Sbjct: 45  YETPWWTAARKADEQALSQLLEDRDVD--AVDENGRTAL 81

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           V+  D+    T L F A  GS +CV+ L   G A +      + G T L
Sbjct: 70  VDAVDEN-GRTALLFVAGLGSDKCVRLLAEAG-ADLD-HRDMRGGLTAL 115

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 48.6 bits (117), Expect = 8e-07
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
           V   DK  N+ PLH AA  GS++ ++ L   G + +  + ++K+G TPL  +      E 
Sbjct: 133 VRIKDKF-NQIPLHRAASVGSLKLIELLCGLGKSAV--NWQDKQGWTPLFHAL----AEG 185

Query: 295 YLHT--KLLDTVAAKKDETN--GNT 315
           +      L++   A+ D  +  G  
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAK 210

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.9 bits (110), Expect = 6e-06
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD----LL 292
           VN  DK    TPL  A   G  +    L+     +  + + +G    D +         L
Sbjct: 167 VNWQDKQ-GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFL 225

Query: 293 EN 294
            N
Sbjct: 226 NN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 237 VNTPDKALN--ETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
           VN  D   +   TP H A   G++E VK L     K   +    +G T L
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
           +N        T LH A      E  + LI   A +   +++K  + PL
Sbjct: 100 LNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASV--RIKDKFNQIPL 144

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKI-QTSVRNKEGKTPL 283
           +   D+     PLH++  F + E    L+     +      +  G TP 
Sbjct: 29  LLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.0 bits (113), Expect = 8e-07
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSS 287
           VNT     N++PLH AAK G V+ VK L+   A    +  N  G  P+D + 
Sbjct: 69  VNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASR--NAVNIFGLRPVDYTD 117

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.9 bits (105), Expect = 8e-06
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KLLDT 303
           ET LH A+  G +  V+ L+   +     V++  G TPL  +        +L   +LL  
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPN--VKDHAGWTPLHEAC----NHGHLKVVELLLQ 64

Query: 304 VAAKKDETN--GNT 315
             A  + T    ++
Sbjct: 65  HKALVNTTGYQNDS 78

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 25/191 (13%), Positives = 56/191 (29%), Gaps = 50/191 (26%)

Query: 140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPA 199
           +  E++K+  L++ G  A       D            T L     +          N  
Sbjct: 151 EYLEMIKI--LVQLG--ASPTAK--DK--------ADETPLMRAMEFR---------NRE 187

Query: 200 MTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVE 259
             +++++ + + +                        ++  +K    + LH+A      +
Sbjct: 188 ALDLMMDTVPSKSSLR---------------------LDYANK-QGNSHLHWAILINWED 225

Query: 260 CVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLE--NYLHTKLLDTVAAKKDETNGNTV 316
              R +     +  ++ + E   PL  S    ++     L  K    +       NG TV
Sbjct: 226 VAMRFVEMGIDV--NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV 283

Query: 317 DQPSVDMISPI 327
               V  +  +
Sbjct: 284 LPDRVVWLDFV 294

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
               D   N   +H AA+ G  + V+RLI        +++N+ G T L  +         
Sbjct: 13  RIKSDDE-NMEKIHVAARKGQTDEVRRLIETGVSP--TIQNRFGCTALHLAC----KFGC 65

Query: 296 LHT-KLLDTVAAKKDETNGNT 315
           + T K L +V       +G  
Sbjct: 66  VDTAKYLASVGEVHSLWHGQK 86

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
               ++    T LH A KFG V+  K L               G+ P+
Sbjct: 46  PTIQNR-FGCTALHLACKFGCVDTAKYLASVGEVHSL----WHGQKPI 88

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 13/118 (11%), Positives = 27/118 (22%), Gaps = 24/118 (20%)

Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY-----------DSDTPSYI-------ERS 229
            L++S +A    +T+ LL+           Y                          E  
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 230 DILLD--LYVNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLD 284
            +L +    V                K  +    +  +   A +    R++       
Sbjct: 307 QLLQEKLDEVVRSLNT-GAGGAVKRKKKAAPAVKRMKLAPSAPV--RTRSRSRARSSA 361

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 10/47 (21%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
            +       + P+H A      + V  L+           + G+ P 
Sbjct: 79  HSLWH---GQKPIHLAVMANKTDLVVALV-------EGAKERGQMPE 115

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLD--SSSGLDLLE 293
           VN  D     TPLH AA +G  E  + L+     +     NK G+T  D      L  LE
Sbjct: 225 VNIKDYD-GWTPLHAAAHWGKEEACRILVENLCDM--EAVNKVGQTAFDVADEDILGYLE 281

Query: 294 NYLHTKLLDTVAAKKDET 311
                + L     ++ ++
Sbjct: 282 ELQKKQNLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLD--SSSG-LDLL 292
           +N PD      PLH AA  G ++  + LI   A +     N EG TPLD        +LL
Sbjct: 99  INQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHV--GAVNSEGDTPLDIAEEEAMEELL 155

Query: 293 ENYLHTKLLDTVAAKKDETNGNTVD 317
           +N ++ + +D  AA+K+E      D
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRD 180

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 21/106 (19%)

Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLY---------VN 238
            L ++ +     + +  +   G         D +     E   +L D             
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGV--------DIEAARKEEERIMLRDARQWLNSGHINDV 193

Query: 239 TPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
              K+   T LH AA  G  E +K LI     +  ++++ +G TPL
Sbjct: 194 RHAKS-GGTALHVAAAKGYTEVLKLLIQARYDV--NIKDYDGWTPL 236

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           +N  +     T LH A    +V+ VK L+   A I  +  + EG  PL
Sbjct: 66  INYANVD-GLTALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPL 110

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 5/48 (10%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
                   +      A   G  E V RL+   A I     N +G T L
Sbjct: 34  TKVKFD--DGAVFLAACSSGDTEEVLRLLERGADINY--ANVDGLTAL 77

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYL 296
           VN   K    +PLH AA+ G  + V  L+       +  + +G TPL  +        Y+
Sbjct: 337 VNAKTKL-GYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAK----RLGYI 390

Query: 297 HT-KLLDTVAAKKDETN 312
               +L  V  +     
Sbjct: 391 SVTDVLKVVTDETSFVL 407

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 15/106 (14%)

Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--YVN 238
            LH++ +  +  M  +LL    N    N      TP        ++  +D+L+     V+
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305

Query: 239 TPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
              +    TPLH A+ +G+++ VK L+   A +  + + K G +PL
Sbjct: 306 ATTRM-GYTPLHVASHYGNIKLVKFLLQHQADV--NAKTKLGYSPL 348

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            N        TPLH AA+ G  E V  L+   A    ++ NK G TPL
Sbjct: 238 ANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQANG--NLGNKSGLTPL 282

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           VN   K  ++TPLH AA+ G    VK L+   A    ++    G TPL
Sbjct: 73  VNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANP--NLATTAGHTPL 117

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.3 bits (111), Expect = 8e-06
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            N  +    ETPLH AA+ G  E  K L+   AK+  + + K+ +TPL
Sbjct: 40  PNVSNVK-VETPLHMAARAGHTEVAKYLLQNKAKV--NAKAKDDQTPL 84

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
                ++   TPLH A+  G +  VK L+   A    +V N + +TPL
Sbjct: 7   GGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPL 51

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
                K    TPLH AAK+G V   + L+   A    +   K G TPL
Sbjct: 139 QACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHP--NAAGKNGLTPL 183

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            N   K    TPLH A    +++ VK L+              G TPL
Sbjct: 172 PNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPH--SPAWNGYTPL 216

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 43.6 bits (104), Expect = 7e-05
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            N    A   TPLH AA+ G VE V  L+   A    +   K+G TPL
Sbjct: 106 PNLATTA-GHTPLHIAAREGHVETVLALLEKEASQ--ACMTKKGFTPL 150

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
            ++P      TPLH AAK   VE  + L+        +  + +G TPL  ++     E +
Sbjct: 205 PHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVTPLHLAA----QEGH 257

Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
                LL +  A  +  N  G T
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLT 280

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS 287
           VN PD      P+H A + G    V  L   + +    R+  G TPL+ + 
Sbjct: 94  VNVPDGT-GALPIHLAVQEGHTAVVSFLAAESDL--HRRDARGLTPLELAL 141

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            N  D +   +P+H AA+ G ++ +K L+   A +  +V +  G  P+
Sbjct: 61  PNVQDTS-GTSPVHDAARTGFLDTLKVLVEHGADV--NVPDGTGALPI 105

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 245 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
               L  AA  G V+ V+RL+    +     N+ GKT L
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL 40

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
            +  ++   +T L     FGS      L+  G A    +V++  G +P+
Sbjct: 29  PDALNRF-GKTALQVMM-FGSTAIALELLKQG-ASP--NVQDTSGTSPV 72

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 52/383 (13%), Positives = 107/383 (27%), Gaps = 123/383 (32%)

Query: 41  YIPSELLGGYENEFSECERVF--DNKEEALLFI-----KKNKKIRFKSFRNFQDAQNFAY 93
            +          E  E + +    +     L +      K +++  + F       N+ +
Sbjct: 37  DVQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKF 93

Query: 94  HGSCGVNTSLLEAPASPSTVTAA----------DPSALPQMSSLAAAEKPSPFKSLKSQE 143
                + + +      PS +T            D     + +      +  P+  L+ Q 
Sbjct: 94  -----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLKLR-QA 143

Query: 144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDF---PTIL-HEGCRYNALH--------- 190
           L++LR                   + ++  G      T +  + C    +          
Sbjct: 144 LLELRP-----------------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 191 VSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLH 250
           ++ K  N    E +LE++       LLY  D P++  RSD   ++ +           L 
Sbjct: 187 LNLKNCN--SPETVLEML-----QKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 251 FAAKFG----------SVECVKRL-IGCAKIQTSVRNK-----------------EGKTP 282
            +  +           + +      + C  + T+ R K                      
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMT 297

Query: 283 LDSSSGLDLLENYLHTK--------------LLDTVAAK-KDETNG-NTVDQPSVDMISP 326
           L       LL  YL  +               L  +A   +D     +     + D ++ 
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 327 IEKLCVN----------FDTLSL 339
           I +  +N          FD LS+
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSV 380

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 50/360 (13%), Positives = 100/360 (27%), Gaps = 119/360 (33%)

Query: 51  ENEFSECERVFDNK--EEALLFIK--KNKKIRFKSFRNFQ--------DAQNFAYHGSCG 98
            +  +E  R+  +K  E  LL +   +N K  + +F N            Q   +  +  
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAF-NLSCKILLTTRFKQVTDFLSAAT 285

Query: 99  VNTSLLEAPASPST----------VTAADPSALP-QMS-------SLAAA---EKPSPFK 137
                L+  +   T               P  LP ++        S+ A    +  + + 
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 138 SLKSQELVKLRKLIEKG--NL--ADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVST 193
           + K     KL  +IE     L  A+ RK+                       ++ L V  
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKM-----------------------FDRLSVFP 382

Query: 194 KAVN-PAMTEMLL---------EIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKA 243
            + + P +   L+          ++ N      L +            +  +Y+    K 
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKL 439

Query: 244 LNETPLHFAAKFGSVECVKRLIGCAKIQTSVR-NKEGKTPLDSSSGLDLLENYL------ 296
            NE  LH           + ++    I  +   +      LD          Y       
Sbjct: 440 ENEYALH-----------RSIVDHYNIPKTFDSDDLIPPYLD---------QYFYSHIGH 479

Query: 297 HTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVNFDTLSLSSHSNGSPESNSSSVTS 356
           H K       +  E             ++    + ++F  L      + +  + S S+ +
Sbjct: 480 HLK-----NIEHPE------------RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 58/249 (23%)

Query: 145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHV--------STKAV 196
           V     ++  +  DV+    D P+ ++S  +   I+      +              + V
Sbjct: 24  VFEDAFVDNFDCKDVQ----DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 197 NPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFG 256
              + E+L        +   L         + S +   +Y+   D+  N+  + FA    
Sbjct: 80  QKFVEEVL-----RINY-KFLMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQV-FAKYN- 130

Query: 257 SVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLH-------TKL-LDTVAAKK 308
               V RL    K++ ++        L  +  +      +        T + LD   + K
Sbjct: 131 ----VSRLQPYLKLRQALLE------LRPAKNV-----LIDGVLGSGKTWVALDVCLSYK 175

Query: 309 DETN----------GNTVDQPSVDMISPIEKLCVNFDT--LSLSSHSNGSPESNSSSVTS 356
            +             N  + P   ++  ++KL    D    S S HS+       S    
Sbjct: 176 VQCKMDFKIFWLNLKN-CNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 357 MSHLLIEKS 365
           +  LL  K 
Sbjct: 234 LRRLLKSKP 242

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
            N  D A    P+H AA+ G ++ +  L   G A++   VR+  G+ P+D
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARL--DVRDAWGRLPVD 116

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
              L  AA  G VE V+ L+   A    +  N  G+ P+
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANP--NAPNSYGRRPI 49

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 9/48 (18%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           ++  D      P+  A + G  +  + L               G    
Sbjct: 104 LDVRDAW-GRLPVDLAEELGHRDVARYLRAAAG-------GTRGSNHA 143

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 29/144 (20%)

Query: 143 ELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT 201
           + + L  L++       +++ V  +       G             ALH++ +  N  + 
Sbjct: 71  DTIAL--LLDVARKTDSLKQFVNASYTDSYYKG-----------QTALHIAIERRNMTLV 117

Query: 202 EMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV 261
            +L+E   N A       +    + +++      Y         E PL  AA    +  V
Sbjct: 118 TLLVE---NGADVQA---AANGDFFKKTKGRPGFY-------FGELPLSLAACTNQLAIV 164

Query: 262 KRLI--GCAKIQTSVRNKEGKTPL 283
           K L+         S R+  G T L
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVL 188

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 41/142 (28%)

Query: 143 ELVKLRKLIEKG-NLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMT 201
            +VK   L++     AD+     D+       G+  T+LH         V       +M 
Sbjct: 162 AIVKF--LLQNSWQPADISAR--DS------VGN--TVLHALVEVADNTVDNTKFVTSMY 209

Query: 202 EMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV 261
             +L +                                 ++    TPL  AA  G +  +
Sbjct: 210 NEILILGAK-------------------LHPTLKLEEITNRK-GLTPLALAASSGKIGVL 249

Query: 262 KRLIGCAKIQTSVRNKEGKTPL 283
             ++         R        
Sbjct: 250 AYILQ--------REIHEPECR 263

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRN---KEGKTPL 283
           V+     + ET LH AA + ++E    L+     ++          EG+T L
Sbjct: 30  VHQRGA-MGETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSELYEGQTAL 79

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 33/145 (22%), Positives = 48/145 (33%), Gaps = 37/145 (25%)

Query: 141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAM 200
           + E   +  L+E     ++      +  Y            EG    ALH++    N  +
Sbjct: 49  NLEAAMV--LMEAA--PELVFEPMTSELY------------EG--QTALHIAVINQNVNL 90

Query: 201 TEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC 260
              LL      A  +            R+   +  Y         E PL FAA  GS E 
Sbjct: 91  VRALLA---RGASVS-----------ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136

Query: 261 VKRLI--GCAKIQTSVRNKEGKTPL 283
           V+ LI  G A I    ++  G T L
Sbjct: 137 VRLLIEHG-ADI--RAQDSLGNTVL 158

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
           E+PL  AAK   V+ + +L+     +   R   G+T L
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL 41

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
            +  D+   +TP+  AA+ G +E V  LI  G A ++    +    T    +       N
Sbjct: 306 KDKQDED-GKTPIMLAAQEGRIEVVMYLIQQG-ASVE--AVDATDHTARQLAQ----ANN 357

Query: 295 YLHT-KLLDTVAAKKD 309
           + +   + D    +++
Sbjct: 358 HHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           VN  D     TPL  A        V  L+   A     + NK  ++ L
Sbjct: 159 VNAMDCD-ENTPLMLAVLARRRRLVAYLMKAGADPT--IYNKSERSAL 203

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KLLDTV 304
            T LH+AA+  ++  VK L+G        ++++GKTP+  ++     E  +     L   
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA----QEGRIEVVMYLIQQ 335

Query: 305 AAKKDETN--GNT 315
            A  +  +   +T
Sbjct: 336 GASVEAVDATDHT 348

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV--RNKEGKTPLDSSSGLDLLEN 294
               +K    + LH AA       +  ++   K++  +   ++ G T L   +  +  + 
Sbjct: 192 PTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 250

Query: 295 YLHTKLL 301
               KLL
Sbjct: 251 VASAKLL 257

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)

Query: 246 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           E PL  AA       V  L   G  +     ++  G T L
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.1 bits (108), Expect = 6e-06
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 247 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KLLDTV 304
           TPL +A     V+CVK L+   A    ++    G   +D +        Y    +++++ 
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGADP--TIETDSGYNSMDLAV----ALGYRSVQQVIESH 157

Query: 305 AAKKDETN 312
             K  +  
Sbjct: 158 LLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 245 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           N   +H  A  G +  +   I     I     ++EG TPL
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINH--TDEEGFTPL 40

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
                K   E+ L  A   G  + VK L+ C   +     +  G TPL
Sbjct: 62  PQLLGKG-RESALSLACSKGYTDIVKMLLDCGVDVN--EYDWNGGTPL 106

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           +N  D+    TPL +AA  G +  V+ L+  G A     +  K  ++ L
Sbjct: 29  INHTDEE-GFTPLMWAAAHGQIAVVEFLLQNG-ADP--QLLGKGRESAL 73

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.9 bits (110), Expect = 6e-06
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSSGLDLLE-- 293
           ++  +    ++PLH AA+    +CV   +   + +   ++NKEG+TPL  +S    +   
Sbjct: 170 LHAVNIH-GDSPLHIAARENRYDCVVLFLSRDSDVT--LKNKEGETPLQCASLNSQVWSA 226

Query: 294 NYLHTKLLDT 303
             +   L D+
Sbjct: 227 LQMSKALQDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.5 bits (109), Expect = 9e-06
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
           V+  D     T LH AAK G  E V+ L+   ++  + ++  G TP+
Sbjct: 70  VDPKDAE-GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
                +    +PLH AA+ G V+    L+   A I     +++ +TPL  ++      N+
Sbjct: 4   FKMEHQN-KRSPLHAAAEAGHVDICHMLVQAGANI--DTCSEDQRTPLMEAA----ENNH 56

Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
           L   K L    A  D  +  G+T
Sbjct: 57  LEAVKYLIKAGALVDPKDAEGST 79

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
           +N  D       LH+AA  G V+  + L+     +     N  G +PL  ++     EN 
Sbjct: 137 INIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDL--HAVNIHGDSPLHIAA----RENR 189

Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
                L  +  +     N  G T
Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGET 212

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
           VN  D     TP+ +A ++  V+ VK L+   + I   +R+ E    L  ++        
Sbjct: 104 VNCQDDG-GWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLHWAA----FSGC 156

Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
           +   ++L          N  G++
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDS 179

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.9 bits (105), Expect = 7e-06
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KLLDT 303
            TPLH AA+ G +E VK L+   A +  + ++K G+TPL  ++       +L   KLL  
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAA----RNGHLEVVKLLLE 56

Query: 304 VAAKKDETN--GNT 315
             A  +  +  G T
Sbjct: 57  AGADVNAKDKNGRT 70

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 42.3 bits (101), Expect = 2e-05
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           VN  DK    TPLH AA+ G +E VK L+   A +  + ++K G+TPL
Sbjct: 61  VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 105

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.9 bits (110), Expect = 7e-06
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 12/86 (13%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSV--RNKEGKTPLDSSSGLDLLE 293
               D+   +T  H A +  S  C++ L+   A     +  RN +G T L  +       
Sbjct: 72  PMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV----NT 126

Query: 294 NYLHT-KLLDTVAA---KKDETNGNT 315
               T +LL    A     D  +G +
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRS 152

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           ++  +  L +TPLH A        V+ L+   A       ++ G+T  
Sbjct: 39  LDIYNN-LRQTPLHLAVITTLPSVVRLLVTAGASP--MALDRHGQTAA 83

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           ++  D     +PL  A +  S+  V+ L+   A +    +   G + L
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSAL 187

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           VN    +   + LH A+  G +  V+ L+   A    S++N    TPL
Sbjct: 176 VNAQMYS-GSSALHSASGRGLLPLVRTLVRSGADS--SLKNCHNDTPL 220

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-----AKIQTSVRNKEGKTPL 283
           +TPLH A   G++  V RL+        ++   + N   +TPL
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPL 50

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.7 bits (107), Expect = 7e-06
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
           VN  D      PLH AAK G +  V+ L+    + +    RN +G T  D +     L  
Sbjct: 96  VNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDLAR----LYG 148

Query: 295 YLHT-KLL 301
                 L+
Sbjct: 149 RNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
              L  AA  G +E +  L+     +  + +N  G+T L
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTAL 42

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
            +  D+      +H AA+ G ++ ++ L+   A +  ++ + EG  PL
Sbjct: 63  PDLKDRT-GFAVIHDAARAGFLDTLQTLLEFQADV--NIEDNEGNLPL 107

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 43.5 bits (104), Expect = 9e-06
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
           VN   K    TPLH AAK G  E VK L+   A +    R+K+G TP   +        +
Sbjct: 35  VNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADVN--ARSKDGNTPEHLAK----KNGH 87

Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
               KLLD   A  +  +   + 
Sbjct: 88  HEIVKLLDAKGADVNARSWGSSH 110

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 5/39 (12%)

Query: 247 TPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           TP H A K G  E VK L   G A +  + R+       
Sbjct: 77  TPEHLAKKNGHHEIVKLLDAKG-ADV--NARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.8 bits (97), Expect = 7e-05
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            TPLH AAK G  E VK+L+   A +  + R+K+G TPL
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADV--NARSKDGNTPL 46

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            N  +   NE PLH AA     + VK L+        S  + +G T L
Sbjct: 57  KNLLE---NEFPLHQAATLEDTKIVKILLFSGLDD--SQFDDKGNTAL 99

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 5/49 (10%), Positives = 12/49 (24%), Gaps = 6/49 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           +    K   +T  + A     V  V   +    +            + +
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD----LAILLSCI 165

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 6/48 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
               D     +  ++A    +V  V  L+   A         E + PL
Sbjct: 24  TFKADVH-GHSASYYAIADNNVRLVCTLLNAGALKNL----LENEFPL 66

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
            + +H   K G V+ +  L+      T+  N     P 
Sbjct: 162 LSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 13/84 (15%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEG-KTPLDSSSGLDLLE 293
            +  D     T L++A   G+++ VK  +     ++      K G KT    +     + 
Sbjct: 88  DSQFDD-KGNTALYYAVDSGNMQTVKLFVKKN-WRL--MFYGKTGWKTSFYHAV----ML 139

Query: 294 NYLHT--KLLDTVAAKKDETNGNT 315
           N +      L  + +  D     +
Sbjct: 140 NDVSIVSYFLSEIPSTFDLAILLS 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 19/88 (21%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDS---------S 286
           +N  D  L +T LH AA  G ++  + L+   +    S+ + +G T             S
Sbjct: 273 MNALDS-LGQTALHRAALAGHLQTCRLLLSYGSDP--SIISLQGFTAAQMGNEAVQQILS 329

Query: 287 SGLDLLENYLHTKLLDTVAAKKDETNGN 314
               +  + +  +LL   A+K     G+
Sbjct: 330 ESTPMRTSDVDYRLL--EASK----AGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           VN  +K    TPLH AA+    + ++ L    AK+  +  +  G+T L
Sbjct: 240 VNEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAKM--NALDSLGQTAL 284

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLE 293
           VN  D     TPLH AA    VE    L+   A    ++ N  GK+ +D +   +L E
Sbjct: 117 VNAMDLW-QFTPLHEAASKNRVEVCSLLLSHGADP--TLVNCHGKSAVDMAPTPELRE 171

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           V+  DK     PLH A  +G  E  + L+   A +  +  +    TPL
Sbjct: 84  VHAKDKG-GLVPLHNACSYGHYEVTELLLKHGACV--NAMDLWQFTPL 128

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            +  D     TPLH AA +  V  V+ L+   A +    ++K G  PL
Sbjct: 51  CHASDG-RKSTPLHLAAGYNRVRIVQLLLQHGADV--HAKDKGGLVPL 95

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSS 287
           VN  D  L  T LH+A +    E V+ LI  G A +    ++K  KT  D S 
Sbjct: 93  VNAKDM-LKMTALHWATEHNHQEVVELLIKYG-ADV--HTQSKFCKTAFDISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.0 bits (100), Expect = 5e-05
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            +   K  + TPLH AA  G    V+ L+   A +  + ++    T L
Sbjct: 60  RDARTKV-DRTPLHMAASEGHANIVEVLLKHGADV--NAKDMLKMTAL 104

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.0 bits (100), Expect = 5e-05
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPL 283
            +PLH AA++G     + L+          R K  +TPL
Sbjct: 35  TSPLHLAAQYGHFSTTEVLLRAGVSR--DARTKVDRTPL 71

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
              L  AA+ G  + V+ L+   A   T   +  G +PL
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPL 38

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
           VN  D     TPLH AA  G  E  K L+  G A    + +N++G TPLD
Sbjct: 101 VNVADL-WKFTPLHEAAAKGKYEICKLLLQHG-ADP--TKKNRDGNTPLD 146

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
           +  L  AAK G VE VK+L     +          TPL
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL 46

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.1 bits (103), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
               +     TPLHFAA +  V  V+ L+   A +    ++K G  PL
Sbjct: 35  CRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADV--HAKDKGGLVPL 79

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           V+  DK     PLH A  +G  E  + L+  G A +  +V +    TPL
Sbjct: 68  VHAKDKG-GLVPLHNACSYGHYEVAELLVKHG-AVV--NVADLWKFTPL 112

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 29/99 (29%)

Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNET 247
            LH++ K  N A   ++  II N                          ++    A   T
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGH-----------------------LDAKA-ADGNT 228

Query: 248 PLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
            LH+AA +   +C+K L+            N+ G+T LD
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALD 264

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           VN  DK    TPLH AA+ G +E VK L+   A +  + ++K G+TPL
Sbjct: 28  VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 72

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 247 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           TPLH AA+ G +E VK L+   A +  + ++K G+TPL
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPL 39

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
            N  D     TPLH A    +    + LI         R  +G TPL
Sbjct: 83  ANIQDNM-GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           ET LH AA++   +  KRL+   A    ++++  G+TPL
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPL 94

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
            +  +    ETPL  AA+ GS E  K L+    A     + +   + P D
Sbjct: 183 KDMQNNR-EETPLFLAAREGSYETAKVLLDHF-ANR--DITDHMDRLPRD 228

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           VN  D    ++ LH+AA   +V+    L+   A     ++N   +TPL
Sbjct: 150 VNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANK--DMQNNREETPL 194

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            TPL  AA+      ++ LI   A +     +  GK+ L
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKSAL 161

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 233 LDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           LD   N  D   N TPL  A   G    + +L+    K+    ++ EG T L
Sbjct: 24  LDFLRNYRDS-YNRTPLMVACMLGMENAIDKLVENFDKL--EDKDIEGSTAL 72

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSS 287
           VN  +    ETPL  A+K+G  E VK+L+  G A I  S R+  G T   S+ 
Sbjct: 127 VNDRNL-EGETPLIVASKYGRSEIVKKLLELG-ADI--SARDLTGLTAEASAR 175

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           VNT D    +TPL ++  FG  E    L+   A +    RN EG+TPL
Sbjct: 94  VNTKDF-SGKTPLMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPL 138

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           +   D     T L +A K   +   ++L+  G + +  + ++  GKTPL
Sbjct: 61  LEDKDIE-GSTALIWAVKNNRLGIAEKLLSKG-SNV--NTKDFSGKTPL 105

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           +N  ++      L  AA+ G ++ VK L+  G   I    +N  G T L
Sbjct: 99  LNKHNRY-GGNALIPAAEKGHIDNVKLLLEDGREDI--DFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
           +N  +  ++++P  +A   G  E +  ++  A    +  N+ G   L
Sbjct: 65  INLQNS-ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 12/84 (14%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
           V+  D     TPL+ A     +E  K LI   A I   ++N    +P   +      +  
Sbjct: 32  VDEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADIN--LQNSISDSPYLYAG----AQGR 84

Query: 296 LHT--KLLDTVAAKKDETN--GNT 315
                 +L       ++ N  G  
Sbjct: 85  TEILAYMLKHATPDLNKHNRYGGN 108

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
              L  A +  + +  + L     ++     + EG TPL
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDE--VDTEGNTPL 43

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
            N  D  +  TPLH A    +    + LI         R  +G TPL
Sbjct: 51  ANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 96

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           ET LH AA++   +  KRL+   A    ++++  G+TPL
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPL 62

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           VN  D    ++ LH+AA   +V+    L+  G A     ++N   +TPL
Sbjct: 118 VNAVDDL-GKSALHWAAAVNNVDAAVVLLKNG-ANK--DMQNNREETPL 162

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
            TPL  AA+      ++ LI   A +  +  +  GK+ L
Sbjct: 93  TTPLILAARLAVEGMLEDLINSHADV--NAVDDLGKSAL 129

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.4 bits (101), Expect = 8e-05
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
            +  +    ETPL  AA+ GS E  K L+    A     + +   + P D
Sbjct: 151 KDMQNNR-EETPLFLAAREGSYETAKVLLDHF-ANR--DITDHMDRLPRD 196

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 6/83 (7%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSSG---LDLL 292
           V       N      AA+ G +  + RL         ++   E       ++    L +L
Sbjct: 121 VKVIQAE-NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL 179

Query: 293 ENYLHTKLLDTVAAKKDETNGNT 315
              L         A     N   
Sbjct: 180 N-RLCELAPTEATAMIQAENYYA 201

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 244 LNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
           L    L  ++  G  + V+R+I        S+ N EG T L
Sbjct: 36  LPLALLLDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITAL 74

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 12/80 (15%)

Query: 240 PDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHT 298
           P+    +  L    +    +     I    +++    N      L  SS    LE     
Sbjct: 1   PEIT-GQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSS----LEGEFDL 52

Query: 299 -KLLDTVAAKKDETN--GNT 315
            + +          N  G T
Sbjct: 53  VQRIIYEVDDPSLPNDEGIT 72

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 11/81 (13%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
            + P+     T LH A   G  E VK L+  G   +  +  + +G TPL  ++      N
Sbjct: 63  PSLPNDE-GITALHNAVCAGHTEIVKFLVQFG-VNV--NAADSDGWTPLHCAA----SCN 114

Query: 295 YLHT-KLLDTVAAKKDETNGN 314
            +   K L    A       +
Sbjct: 115 NVQVCKFLVESGAAVFAMTYS 135

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSSGLDLLEN 294
           VN  D     TPLH AA   +V+  K L+  G A    +  + +              E 
Sbjct: 96  VNAADSD-GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM----EEG 150

Query: 295 YLHT-KLLDTVAAKKDETNGN 314
           Y    + L  V  K    N  
Sbjct: 151 YTQCSQFLYGVQEKMGIMNKG 171

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 12/84 (14%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
            + P++    T LH A    +   V  LI   A +  +  +  G TPL  ++      N 
Sbjct: 47  PSQPNEE-GITALHNAICGANYSIVDFLITAGANV--NSPDSHGWTPLHCAA----SCND 99

Query: 296 LHT-KLLDTVAA---KKDETNGNT 315
                 L    A       ++G T
Sbjct: 100 TVICMALVQHGAAIFATTLSDGAT 123

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 6/78 (7%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
           VN+PD     TPLH AA          L+   A I  +    +G T  +        E Y
Sbjct: 80  VNSPDS-HGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCD--PYREGY 135

Query: 296 LHT-KLLDTVAAKKDETN 312
                 L  V       N
Sbjct: 136 ADCATYLADVEQSMGLMN 153

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 237 VNTPDKALN--ETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
                +A       L  AA  G +E V++ +        S  N+EG T L
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP--SQPNEEGITAL 58

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 29/99 (29%)

Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNET 247
           ALH++ ++V+     ++  ++ N                          ++      + T
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGN-----------------------LDKQTGKGS-T 207

Query: 248 PLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLD 284
            LH+     + EC+K L+          + N+ G+TPLD
Sbjct: 208 ALHYCCLTDNAECLKLLLRGKA---SIEIANESGETPLD 243

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 19/154 (12%), Positives = 38/154 (24%), Gaps = 30/154 (19%)

Query: 152 EKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCR--YNALHVSTKAVNPAMTEMLLE--- 206
             G   D           L   G             Y+ L  +       ++  L+    
Sbjct: 15  MLGTYEDFL--------ELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 207 ---IIGNPAFTNLLY-----DSDTPSYIERSDILLDL--YVNTPDKALNETPLHFAAKFG 256
                     T          +D     E   I L+    +    K   +  +       
Sbjct: 67  DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-YKIVVFKNIFNY 125

Query: 257 SVECVKR------LIGCAKIQTSVRNKEGKTPLD 284
            V+  +       +   + +Q  +++K G T L+
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 32/137 (23%)

Query: 143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTE 202
           ++     LI KG  AD++             G   T+     +     +        + +
Sbjct: 56  KISMF--LINKG--ADIKSR--TK------EGT--TLFFPLFQGGGNDI---TGTTELCK 98

Query: 203 MLLE------IIGNPAFTNLLY-----DSDTPSYIERSDILLD---LYVNTPDKALNETP 248
           + LE       +  P    +         D    I    ++     L +   DK    T 
Sbjct: 99  IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW-GLTA 157

Query: 249 LHFAAKFGSVECVKRLI 265
           L F  +      +K + 
Sbjct: 158 LEFVKRCQKPIALKMME 174

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.0 bits (100), Expect = 6e-05
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 247 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENYLHT-KLLDTV 304
             L  AA+ G  + V+ L+   A +  +  +  G TPL  ++       +L   ++L   
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADV--NAEDASGWTPLHLAA----FNGHLEIVEVLLKN 69

Query: 305 AAKKDETN--GNT 315
            A  +  +  G T
Sbjct: 70  GADVNAVDHAGMT 82

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.0 bits (100), Expect = 7e-05
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)

Query: 246 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSS 287
            TPLH AA FG +E V+ L+  G A +  + ++K GKT  D S 
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNG-ADV--NAQDKFGKTAFDISI 154

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.0 bits (100), Expect = 7e-05
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLENY 295
           VN  D +   TPLH AA  G +E V+ L+   A +  +  +  G TPL  ++    L  +
Sbjct: 40  VNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADV--NAVDHAGMTPLRLAA----LFGH 92

Query: 296 LHT-KLLDTVAAKKDETN--GNT 315
           L   ++L    A  +  +  G+T
Sbjct: 93  LEIVEVLLKNGADVNANDMEGHT 115

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 245 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
               L  AA+ G  + V+ L+   A +  + ++K G TPL
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADV--AAKDKNGSTPL 61

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPLDSSS 287
           V   DK    TPLH AA+ G +E VK L+  G A +    ++K GKT  D S 
Sbjct: 50  VAAKDKN-GSTPLHLAARNGHLEVVKLLLEAG-ADVXA--QDKFGKTAFDISI 98

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.8 bits (97), Expect = 9e-05
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           VN  D+    TPL+ A   G +E V+ L+  G A +  +  +  G TPL
Sbjct: 40  VNAKDE-YGLTPLYLATAHGHLEIVEVLLKNG-ADV--NAVDAIGFTPL 84

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           VN  D     TPLH AA  G +E  + L+  G A +  + ++K GKT  
Sbjct: 73  VNAVDAI-GFTPLHLAAFIGHLEIAEVLLKHG-ADV--NAQDKFGKTAF 117

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 247 TPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
             L  AA+ G  + V+ L+   A +  + +++ G TPL
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADV--NAKDEYGLTPL 51

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPL 283
               D+  + T LH+A   G  E V+ L+     +    ++  G +PL
Sbjct: 33  ATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPL 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.92
2rfa_A	232	Transient receptor potential cation channel subfa	99.91
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.91
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.9
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.9
2etb_A	256	Transient receptor potential cation channel subfam	99.9
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.9
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.9
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.9
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.9
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.9
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.89
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.89
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.89
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.89
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.89
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.89
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.89
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
2rfa_A	232	Transient receptor potential cation channel subfa	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.89
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.89
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.89
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.89
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.88
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.88
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.88
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.88
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.88
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.88
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.88
2pnn_A	273	Transient receptor potential cation channel subfa	99.88
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.88
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.87
2etb_A	256	Transient receptor potential cation channel subfam	99.87
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.87
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.87
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.87
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.86
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.86
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.86
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.86
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.86
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.86
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.86
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.86
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.86
2pnn_A	273	Transient receptor potential cation channel subfa	99.86
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.86
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.85
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.85
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.85
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.85
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.84
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.84
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.84
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.83
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.82
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.81
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.77
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.77
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.77
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.77
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.77
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.77
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.76
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.75
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.74
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.73
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.73
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.73
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.73
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.72
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.7
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.69
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.68
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.67
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.67
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.67
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.64
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.63
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.63
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.62
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.59
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.57
3bsu_A	53	Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid	98.72
1qhk_A	47	RNAse HI, protein (ribonuclease HI); ribonuclease	98.7

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=3.1e-26  Score=198.50  Aligned_cols=139  Identities=23%  Similarity=0.242  Sum_probs=127.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCcccccc
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNLLYD  219 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~~~~  219 (367)
                      ++|+.||+.|+++.|        ++|++.|+++ +.+|..|+||||+|+..++.+++++|++.+++.     ....+++.
T Consensus         6 ~~L~~Aa~~G~~~~v--------~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~   76 (169)
T 4gpm_A            6 KRLIEAAENGNKDRV--------KDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHH   76 (169)
T ss_dssp             HHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCHHHH--------HHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHH
Confidence            479999999999999        9999999999 688999999999999999999999999999864     34566777


Q ss_pred             cCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         220 SDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++..++.+++++|++.|++++  |. .|+||||+||..|+.++|++|+++| ++++.+|.+|+||||+|+..|+.+.
T Consensus        77 A~~~g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~i  151 (169)
T 4gpm_A           77 AAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEV  151 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHH
Confidence            888899999999999987665  66 8999999999999999999999999 9999999999999999999998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=202.03  Aligned_cols=152  Identities=22%  Similarity=0.151  Sum_probs=127.3

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCC----------------------------------hhHHhcCCCccccCCCCC
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNP----------------------------------RYLVSSGDFPTILHEGCR  185 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p----------------------------------~~Ll~~g~~~~~~~d~~G  185 (367)
                      +..++++|+.||..|+++.|+.++....                                  ++|+..|+++ +.+|..|
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G   86 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDG   86 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTS
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCC
Confidence            3456789999999999999988874321                                  3466788888 6789999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhcCCCC-----CcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCH
Q psy4222         186 YNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSV  258 (367)
Q Consensus       186 ~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~  258 (367)
                      +||||+||..|+.+++++||+.+++..     ...+++.+...++.+++++|++.|+++.  |. .|+||||+||..|+.
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~-~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDL-SGNTPLIYACSGGHH  165 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCG
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCCH
Confidence            999999999999999999999998643     3455666677888999999999987665  56 899999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         259 ECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       259 ~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++|++||++| ++++.+|..|+||||+|+..|+.+.
T Consensus       166 ~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~  200 (269)
T 4b93_B          166 ELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFV  200 (269)
T ss_dssp             GGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHH
Confidence            9999999999 9999999999999999999999874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.92  E-value=3.7e-24  Score=184.04  Aligned_cols=145  Identities=25%  Similarity=0.228  Sum_probs=128.6

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CC
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AF  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~  213 (367)
                      +.....++|++||+.|+.+.|        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.     ..
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   80 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEV--------RILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG   80 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCcccchHHHHHHcCCHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            345567899999999999999        9999999888 578889999999999999999999999998764     34


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      ..+++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..++
T Consensus        81 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E           81 MTPLRLAALFGHLEIVEVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCC
Confidence            566777788899999999999987665  55 8999999999999999999999999 9999999999999999999998


Q ss_pred             HHH
Q psy4222         292 LEN  294 (367)
Q Consensus       292 ~~~  294 (367)
                      .+.
T Consensus       159 ~~~  161 (169)
T 2y1l_E          159 EDL  161 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.91  E-value=4.7e-24  Score=191.89  Aligned_cols=143  Identities=20%  Similarity=0.081  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhc-CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC----------
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP----------  211 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~-g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~----------  211 (367)
                      +.|+||.||..|+.+.|        ++|++. |.++ +.+|..|+||||+|+..|+.+++++|++.+++.          
T Consensus         3 g~t~L~~A~~~g~~~~v--------~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~   73 (232)
T 2rfa_A            3 WESPLLLAAKENDVQAL--------SKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY   73 (232)
T ss_dssp             TTCHHHHHHHTTCHHHH--------HHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT
T ss_pred             CCCHHHHHHHcCCHHHH--------HHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCC
Confidence            35799999999999999        888877 7777 678999999999999999999999999998753          


Q ss_pred             CCcccccccCCCChHHHHHHHHhcCCCCCCCC--------------CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q psy4222         212 AFTNLLYDSDTPSYIERSDILLDLYVNTPDKA--------------LNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK  277 (367)
Q Consensus       212 ~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~--------------~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~  277 (367)
                      ....+++.++..++.+++++|++.|+++....              .|+||||+|+..|+.++|++|+++| ++++.+|.
T Consensus        74 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~  152 (232)
T 2rfa_A           74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDS  152 (232)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCT
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCC
Confidence            45667777888899999999999998776432              5999999999999999999999999 99999999


Q ss_pred             CCChHHHHHhcCCcHHHH
Q psy4222         278 EGKTPLDSSSGLDLLENY  295 (367)
Q Consensus       278 ~G~TPL~iA~~~g~~~~l  295 (367)
                      .|+||||+|+..++.+..
T Consensus       153 ~g~t~L~~A~~~~~~~~~  170 (232)
T 2rfa_A          153 LGNTVLHILILQPNKTFA  170 (232)
T ss_dssp             TSCCHHHHHHTCSCHHHH
T ss_pred             CCCCHHHHHHHcCChHHH
Confidence            999999999999988743

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.91  E-value=8.9e-25  Score=203.05  Aligned_cols=151  Identities=17%  Similarity=0.105  Sum_probs=134.7

Q ss_pred             CCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC---
Q psy4222         136 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA---  212 (367)
Q Consensus       136 f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~---  212 (367)
                      ....+..+.||||+||..|+.++|        ++|+..|+++ ..++..|.||||+|+..++.+++++|++.+++.+   
T Consensus        79 vn~~d~~G~TpLh~A~~~g~~~~v--------~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d  149 (269)
T 4b93_B           79 VNVTSQDGSSPLHVAALHGRADLI--------PLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD  149 (269)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCTTHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHH--------HHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC
Confidence            344556778999999999999999        9999999988 5788899999999999999999999999998643   


Q ss_pred             --CcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222         213 --FTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG  288 (367)
Q Consensus       213 --~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~  288 (367)
                        ...+++.++..++.+++++|++.|++++  +. .|+||||+||..|+.++|++||++| +|++++|.+|+||||+|++
T Consensus       150 ~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          150 LSGNTPLIYACSGGHHELVALLLQHGASINASNN-KGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             TTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCT
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCcccc-CCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHh
Confidence              4556777788899999999999997766  55 8999999999999999999999999 9999999999999999999


Q ss_pred             CCcHHHHHh
Q psy4222         289 LDLLENYLH  297 (367)
Q Consensus       289 ~g~~~~ll~  297 (367)
                      .+++.++|+
T Consensus       228 ~~~i~~lL~  236 (269)
T 4b93_B          228 NSKIMELLQ  236 (269)
T ss_dssp             TCHHHHHTT
T ss_pred             CCcHHHHHH
Confidence            998766654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.91  E-value=6.3e-24  Score=182.61  Aligned_cols=141  Identities=21%  Similarity=0.281  Sum_probs=125.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Cccccc
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLY  218 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~  218 (367)
                      .++||.||..|+.+.+        ++|+..+....+.++..|+||||+|+..|+.+++++|++.+++.+     ...+++
T Consensus         3 ~~~L~~A~~~g~~~~v--------~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   74 (172)
T 3v30_A            3 SLSIHQLAAQGELDQL--------KEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALS   74 (172)
T ss_dssp             -CCHHHHHHTTCHHHH--------HHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred             hhhHHHHHHcCCHHHH--------HHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHH
Confidence            4689999999999999        777777766556778999999999999999999999999998643     456677


Q ss_pred             ccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         219 DSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      .++..++.+++++|++.|+++.  +. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~  150 (172)
T 3v30_A           75 LASTGGYTDIVGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKV  150 (172)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHH
Confidence            7788899999999999986665  55 8999999999999999999999999 9999999999999999999988764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.90  E-value=1.4e-23  Score=177.37  Aligned_cols=139  Identities=22%  Similarity=0.158  Sum_probs=124.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Cccccc
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLY  218 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~  218 (367)
                      -++|+.|+..|+.+.|        ++|++.|.+.  ..+..|+||||+|+..|+.+++++|++.+++.+     ...+++
T Consensus         3 ~~~L~~A~~~g~~~~v--------~~Ll~~g~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   72 (153)
T 1awc_B            3 GKKLLEAARAGQDDEV--------RILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHTCHHHH--------HHHHHHTCCC--CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             cHHHHHHHHcCCHHHH--------HHHHHcCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            4789999999999999        8888888765  357889999999999999999999999987643     455677


Q ss_pred             ccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         219 DSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      .++..++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus        73 ~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i  148 (153)
T 1awc_B           73 MAASEGHANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHcChHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHH
Confidence            7778899999999999987665  55 8999999999999999999999999 9999999999999999999998774

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.90  E-value=5.5e-24  Score=186.45  Aligned_cols=145  Identities=26%  Similarity=0.123  Sum_probs=129.4

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CC
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AF  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~  213 (367)
                      .+..+.|+||.|+..|+.+.+        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.     ..
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v--------~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  101 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAI--------DKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG  101 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGH--------HHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTS
T ss_pred             cCCCCCCHHHHHHHcCCHHHH--------HHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            445667999999999999999        8888888877 577888999999999999999999999998764     34


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      ..+++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..|+
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFGR  179 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCc
Confidence            566777778899999999999987665  55 8999999999999999999999999 9999999999999999999998


Q ss_pred             HHH
Q psy4222         292 LEN  294 (367)
Q Consensus       292 ~~~  294 (367)
                      .+.
T Consensus       180 ~~~  182 (192)
T 2rfm_A          180 QEV  182 (192)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            774

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.90  E-value=4.7e-24  Score=195.11  Aligned_cols=146  Identities=17%  Similarity=0.096  Sum_probs=128.5

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccc---cCCCCCCcHHHHHHHc---CCHHHHHHHHhhcCCC-----
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI---LHEGCRYNALHVSTKA---VNPAMTEMLLEIIGNP-----  211 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~---~~d~~G~TpLh~Aa~~---g~~~iv~~LL~~~~d~-----  211 (367)
                      +.|+||.||..|+.+.|+.++    ++|++.|.++..   .+|..|+||||+|+..   |+.+++++|++.+++.     
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll----~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   77 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLL----EYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP   77 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHH----HHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC
T ss_pred             CccHHHHHHHcCCHHHHHHHH----HHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh
Confidence            468999999999999998888    899999988842   2788999999999999   9999999999998643     


Q ss_pred             -----------CCcccccccCCCChHHHHHHHHhcCCCCCCCC-C-------------CCcHHHHHHHcCCHHHHHHHHh
Q psy4222         212 -----------AFTNLLYDSDTPSYIERSDILLDLYVNTPDKA-L-------------NETPLHFAAKFGSVECVKRLIG  266 (367)
Q Consensus       212 -----------~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~-~-------------g~TpLH~Aa~~g~~~vv~~LL~  266 (367)
                                 ....+++.++..++.+++++|++.|+++.... .             |+||||+||..|+.++|++|++
T Consensus        78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  157 (256)
T 2etb_A           78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE  157 (256)
T ss_dssp             GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                       35677788888999999999999997776432 3             9999999999999999999999


Q ss_pred             ---CCCCCCCCCCCCCChHHHHHhc--CCcHH
Q psy4222         267 ---CAKIQTSVRNKEGKTPLDSSSG--LDLLE  293 (367)
Q Consensus       267 ---~g~ad~~~~n~~G~TPL~iA~~--~g~~~  293 (367)
                         +| ++++.+|..|+||||+|+.  .++.+
T Consensus       158 ~~~~g-a~~n~~d~~g~TpLh~A~~~~~~~~~  188 (256)
T 2etb_A          158 NPHQP-ASLEATDSLGNTVLHALVMIADNSPE  188 (256)
T ss_dssp             CSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred             ccccC-CCcCccCCCCCCHHHHHHHcccCCch
Confidence               88 9999999999999999997  67655

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.90  E-value=1.2e-23  Score=193.87  Aligned_cols=145  Identities=16%  Similarity=0.076  Sum_probs=93.4

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCc--cccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC----
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFP--TILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA----  212 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~--~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~----  212 (367)
                      .+..+.|+||+||..|+.+.|        ++|++.|+++  .+.++..|+||||+|+..|+.+++++|++.|++..    
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~   76 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFL--------DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER   76 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHH--------HHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT
T ss_pred             cCCCCCcHHHHHHHcCCHHHH--------HHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            345566788888888888888        6666666552  24556677777777777777777777777776532    


Q ss_pred             -CcccccccCCCChHHHHHHHHhcCC-------------------------------------------------CCCCC
Q psy4222         213 -FTNLLYDSDTPSYIERSDILLDLYV-------------------------------------------------NTPDK  242 (367)
Q Consensus       213 -~~~~~~~~~~~~~~~~v~~Ll~~~~-------------------------------------------------n~~d~  242 (367)
                       ...+++.++..++.+++++|++.+.                                                 +..+.
T Consensus        77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (282)
T 1oy3_D           77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY  156 (282)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred             CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC
Confidence             3344555556666666666665542                                                 22333


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CChHHHHHhcCCcHH
Q psy4222         243 ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKE-GKTPLDSSSGLDLLE  293 (367)
Q Consensus       243 ~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~-G~TPL~iA~~~g~~~  293 (367)
                       .|+||||+|+..|+.++|++|+++| ++++.++.. |+||||+|+..|+.+
T Consensus       157 -~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~  206 (282)
T 1oy3_D          157 -DGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAAS  206 (282)
T ss_dssp             -TSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             -CCcCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHH
Confidence             5666666666666666666666666 666666643 666666666666654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.90  E-value=8.5e-24  Score=180.91  Aligned_cols=140  Identities=19%  Similarity=0.249  Sum_probs=125.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Cccccc
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLY  218 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~  218 (367)
                      .|+||.|+..|+.+.+        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++..     ...+++
T Consensus         4 ~t~L~~A~~~g~~~~v--------~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   74 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYL--------ATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALS   74 (167)
T ss_dssp             CCCHHHHHHTTCHHHH--------HHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cchHHHHHHCCCHHHH--------HHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            3689999999999999        8888888776 6778899999999999999999999999988643     345677


Q ss_pred             ccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         219 DSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      .++..++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~  150 (167)
T 3v31_A           75 LACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSV  150 (167)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            7778899999999999986665  55 8999999999999999999999999 9999999999999999999888774

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=6.1e-23  Score=170.17  Aligned_cols=119  Identities=27%  Similarity=0.272  Sum_probs=108.0

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccc
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  218 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~  218 (367)
                      +.....|+||+||..|+.+.|        ++|++.|.++ +.+|..|+||||+|+..|+.+++++|++.+++        
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------   72 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEV--------RILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD--------   72 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--------
T ss_pred             ccccccHHHHHHHHhCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence            446678999999999999999        8999999888 67889999999999999999999999998866        


Q ss_pred             ccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         219 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                                        ++..+. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus        73 ------------------~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~  128 (136)
T 2jab_A           73 ------------------VNAVDA-IGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDL  128 (136)
T ss_dssp             ------------------TTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ------------------CCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHH
Confidence                              556667 8999999999999999999999999 9999999999999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.90  E-value=4.2e-23  Score=181.35  Aligned_cols=145  Identities=14%  Similarity=0.146  Sum_probs=126.5

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC-C-----CC
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-N-----PA  212 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~-d-----~~  212 (367)
                      .+..+.|+||.|+..|+.+.|        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+. +     ..
T Consensus        35 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  105 (201)
T 3hra_A           35 VDTEGNTPLNIAVHNNDIEIA--------KALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY  105 (201)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTT
T ss_pred             CCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCC
Confidence            344567899999999999999        9999999988 5788899999999999999999999996544 2     33


Q ss_pred             CcccccccCCCChHHHHHHHHhcC-CC--CCCCCCCCcHHHHHHHcCC-----HHHHHHHHhCCCCCCCCCCCCCChHHH
Q psy4222         213 FTNLLYDSDTPSYIERSDILLDLY-VN--TPDKALNETPLHFAAKFGS-----VECVKRLIGCAKIQTSVRNKEGKTPLD  284 (367)
Q Consensus       213 ~~~~~~~~~~~~~~~~v~~Ll~~~-~n--~~d~~~g~TpLH~Aa~~g~-----~~vv~~LL~~g~ad~~~~n~~G~TPL~  284 (367)
                      ...+++.++..++.+++++|++.+ .+  ..+. .|+||||+|+..|+     .+++++|+++| ++++.+|..|+||||
T Consensus       106 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~  183 (201)
T 3hra_A          106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQND-FGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIKDNSGRTAMD  183 (201)
T ss_dssp             SCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCT-TSCCHHHHHHHSSCCSHHHHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC-CCCCHHHHHHHhccchhhHHHHHHHHHHCC-CCCCccCCCCCCHHH
Confidence            456677778889999999999988 44  4466 89999999999998     99999999999 999999999999999


Q ss_pred             HHhcCCcHHH
Q psy4222         285 SSSGLDLLEN  294 (367)
Q Consensus       285 iA~~~g~~~~  294 (367)
                      +|+..|+.+.
T Consensus       184 ~A~~~~~~~~  193 (201)
T 3hra_A          184 YANQKGYTEI  193 (201)
T ss_dssp             HHHHHTCHHH
T ss_pred             HHHHcCCHhH
Confidence            9999988774

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.90  E-value=1.9e-23  Score=177.40  Aligned_cols=140  Identities=24%  Similarity=0.268  Sum_probs=125.0

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccccc
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLL  217 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~  217 (367)
                      ..++||.|+..|+.+.+        ++|++.|.++ +.++..|+||||+|+. |+.+++++|++.+++.+     ...++
T Consensus         5 ~~~~L~~A~~~g~~~~v--------~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L   74 (162)
T 1ihb_A            5 WGNELASAAARGDLEQL--------TSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVI   74 (162)
T ss_dssp             CHHHHHHHHHHTCHHHH--------HHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HhhHHHHHHHcCCHHHH--------HHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            35899999999999999        8888889888 6778999999999999 99999999999987643     45667


Q ss_pred             cccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCChHHHHHhcCCcHHH
Q psy4222         218 YDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQ-TSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       218 ~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad-~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|+++| ++ ++.+|..|+||||+|+..|+.+.
T Consensus        75 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~l~~A~~~~~~~~  152 (162)
T 1ihb_A           75 HDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLARLYGRNEV  152 (162)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcc-CCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence            77778899999999999987665  56 8999999999999999999999999 66 69999999999999999998774

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.90  E-value=3e-23  Score=177.13  Aligned_cols=143  Identities=22%  Similarity=0.211  Sum_probs=122.7

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFT  214 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~  214 (367)
                      +.+..++||.|++.|+.+.|        ++|++.+.......+..|+||||+|+..|+.+++++|++.+++.     ...
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v--------~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   76 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETV--------KKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL   76 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHH--------HHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cchhhHHHHHHHHhCCHHHH--------HHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCC
Confidence            35677999999999999999        66666544443566788999999999999999999999998764     345


Q ss_pred             ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222         215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL  292 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~  292 (367)
                      .+++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+. ++.
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~  153 (165)
T 3twr_A           77 VPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDT  153 (165)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCH
T ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CCh
Confidence            66777788899999999999987665  55 8999999999999999999999999 9999999999999999876 655


Q ss_pred             H
Q psy4222         293 E  293 (367)
Q Consensus       293 ~  293 (367)
                      +
T Consensus       154 ~  154 (165)
T 3twr_A          154 D  154 (165)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.89  E-value=3.7e-23  Score=189.26  Aligned_cols=143  Identities=15%  Similarity=0.149  Sum_probs=110.8

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC-C-----CCCc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-N-----PAFT  214 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~-d-----~~~~  214 (367)
                      ..+.|+||+|+..|+.+.|        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.++ +     ....
T Consensus        55 ~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  125 (253)
T 1yyh_A           55 RTGETALHLAARYSRSDAA--------KRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT  125 (253)
T ss_dssp             TTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCC
T ss_pred             CCCCcHHHHHHHcCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCC
Confidence            4456788888888888888        7777888777 5677778888888888888888888888765 2     3344


Q ss_pred             ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222         215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL  292 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~  292 (367)
                      .+++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~  203 (253)
T 1yyh_A          126 TPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSY  203 (253)
T ss_dssp             CHHHHHHHHTCSSHHHHHHHTTCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCH
Confidence            55666666677788888888876655  44 7888888888888888888888888 88888888888888888887776


Q ss_pred             HH
Q psy4222         293 EN  294 (367)
Q Consensus       293 ~~  294 (367)
                      +.
T Consensus       204 ~~  205 (253)
T 1yyh_A          204 ET  205 (253)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.89  E-value=2e-23  Score=188.63  Aligned_cols=149  Identities=15%  Similarity=0.141  Sum_probs=132.2

Q ss_pred             CCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCC-----
Q psy4222         136 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN-----  210 (367)
Q Consensus       136 f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d-----  210 (367)
                      +...+..+.|+||.|+..|+.++|        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++     
T Consensus        38 ~~~~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  108 (236)
T 1ikn_D           38 LNFQNNLQQTPLHLAVITNQPEIA--------EALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS  108 (236)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHH--------HCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSC
T ss_pred             hhccCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHH
Confidence            444556678999999999999999        9999999998 67889999999999999999999999998764     


Q ss_pred             ------CCCcccccccCCCChHHHHHHHHhcCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChH
Q psy4222         211 ------PAFTNLLYDSDTPSYIERSDILLDLYVNTPDK--ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP  282 (367)
Q Consensus       211 ------~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~--~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TP  282 (367)
                            .....+++.++..++.+++++|++.|+++...  ..|+||||+|+..|+.++|++|+++| ++++.+|..|+||
T Consensus       109 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tp  187 (236)
T 1ikn_D          109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSP  187 (236)
T ss_dssp             GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCG
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCH
Confidence                  23556677777889999999999999877643  37999999999999999999999999 9999999999999


Q ss_pred             HHHHhcCCcHHH
Q psy4222         283 LDSSSGLDLLEN  294 (367)
Q Consensus       283 L~iA~~~g~~~~  294 (367)
                      ||+|+..++.+.
T Consensus       188 l~~A~~~~~~~~  199 (236)
T 1ikn_D          188 YQLTWGRPSTRI  199 (236)
T ss_dssp             GGGCTTSSCHHH
T ss_pred             HHHHHccCchHH
Confidence            999999998774

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.89  E-value=2.4e-23  Score=191.83  Aligned_cols=145  Identities=19%  Similarity=0.117  Sum_probs=127.4

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCC---------
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN---------  210 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d---------  210 (367)
                      +..+.|+||+|+..|+.++|        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++         
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v--------~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  112 (282)
T 1oy3_D           42 NDLGQTALHLAAILGEASTV--------EKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY  112 (282)
T ss_dssp             CTTSCCHHHHHHHHTCHHHH--------HHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----
T ss_pred             CCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHH
Confidence            34567999999999999999        9999999998 57889999999999999999999999997643         


Q ss_pred             -------------------------------------------CCCcccccccCCCChHHHHHHHHhcCCCCCCC--CCC
Q psy4222         211 -------------------------------------------PAFTNLLYDSDTPSYIERSDILLDLYVNTPDK--ALN  245 (367)
Q Consensus       211 -------------------------------------------~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~--~~g  245 (367)
                                                                 .....+++.++..++.+++++|++.|+++...  ..|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g  192 (282)
T 1oy3_D          113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG  192 (282)
T ss_dssp             -------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC
T ss_pred             hhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence                                                       12345566667788999999999999777643  259


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         246 ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       246 ~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus       193 ~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~  240 (282)
T 1oy3_D          193 RTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPIL  240 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHH
Confidence            99999999999999999999999 9999999999999999999998774

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.89  E-value=5.3e-23  Score=183.63  Aligned_cols=144  Identities=15%  Similarity=0.149  Sum_probs=121.2

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC-C-----CCC
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-N-----PAF  213 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~-d-----~~~  213 (367)
                      +..+.|+||.|+..|+.+.|        ++|++.|+++ +..+..|+||||+|+..|+.+++++|++.++ +     ...
T Consensus        22 d~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g   92 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAA--------KRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG   92 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTC
T ss_pred             CCCCCchHHHHHHcCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence            45667899999999999999        8888888887 5778889999999999999999999998876 2     334


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      ..+++.++..++.+++++|++.++++.  +. .|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+
T Consensus        93 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~  170 (223)
T 2f8y_A           93 TTPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGS  170 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcHHHHHHHhCcHHHHHHHHHcCCCCcCcCC-CCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCcCHHHHHHHcCC
Confidence            556666777888899999999886665  55 7899999999999999999999998 8999999999999999998888


Q ss_pred             HHH
Q psy4222         292 LEN  294 (367)
Q Consensus       292 ~~~  294 (367)
                      .+.
T Consensus       171 ~~~  173 (223)
T 2f8y_A          171 YET  173 (223)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.89  E-value=8.6e-23  Score=184.00  Aligned_cols=149  Identities=17%  Similarity=0.114  Sum_probs=114.2

Q ss_pred             CCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC---
Q psy4222         135 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP---  211 (367)
Q Consensus       135 ~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~---  211 (367)
                      +|+..+..+.|+||.||..|+.+.+        ++|++.|.++ +..+..|+||||+|+..|+.+++++|++.+++.   
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   73 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDIC--------HMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK   73 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHH--------HHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC
Confidence            4555566677888888888888888        7888888777 566777888888888888888888888887653   


Q ss_pred             --CCcccccccCCCChHHHHHHHHhcC-CCC--CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH
Q psy4222         212 --AFTNLLYDSDTPSYIERSDILLDLY-VNT--PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS  286 (367)
Q Consensus       212 --~~~~~~~~~~~~~~~~~v~~Ll~~~-~n~--~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA  286 (367)
                        ....+++.+...++.+++++|++.+ .+.  .+. .|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|
T Consensus        74 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A  151 (237)
T 3b7b_A           74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWA  151 (237)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHH
Confidence              2344566666777888888888776 333  355 7888888888888888888888888 78888888888888888


Q ss_pred             hcCCcHHH
Q psy4222         287 SGLDLLEN  294 (367)
Q Consensus       287 ~~~g~~~~  294 (367)
                      +..|+.+.
T Consensus       152 ~~~~~~~~  159 (237)
T 3b7b_A          152 AFSGCVDI  159 (237)
T ss_dssp             HHHCCHHH
T ss_pred             HHCCCHHH
Confidence            87777653

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.89  E-value=7.1e-23  Score=191.21  Aligned_cols=148  Identities=18%  Similarity=0.167  Sum_probs=130.0

Q ss_pred             CCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC----
Q psy4222         137 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA----  212 (367)
Q Consensus       137 ~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~----  212 (367)
                      ...+..+.|+||.||..|+.+.|        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.+    
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  123 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSL--------RNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA  123 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHH--------HHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT
T ss_pred             cCCCccCCCHHHHHHHcCCHHHH--------HHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence            34556677999999999999999        8888889887 5788899999999999999999999999987643    


Q ss_pred             -CcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         213 -FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       213 -~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                       ...+++.++..++.+++++|++.+++......|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+
T Consensus       124 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~  202 (285)
T 3d9h_A          124 DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQ  202 (285)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCc
Confidence             45667777788899999999999988875447999999999999999999999999 8999999999999999999998


Q ss_pred             HHH
Q psy4222         292 LEN  294 (367)
Q Consensus       292 ~~~  294 (367)
                      .+.
T Consensus       203 ~~~  205 (285)
T 3d9h_A          203 RAC  205 (285)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            774

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.89  E-value=3.6e-23  Score=199.02  Aligned_cols=146  Identities=18%  Similarity=0.185  Sum_probs=123.2

Q ss_pred             CCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC---CCc
Q psy4222         138 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP---AFT  214 (367)
Q Consensus       138 ~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~---~~~  214 (367)
                      ..+..+.|+||+||..|+++.|        ++|++.|+++ +.+|..|+||||+||..|+.+++++|++.+++.   ...
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v--------~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~   85 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEV--------RRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ   85 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTB
T ss_pred             ccCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCC
Confidence            3567889999999999999999        8999999888 688999999999999999999999999999854   345


Q ss_pred             ccccccCCCChHHHHHHHHhc----CCCC-------------------CCCCCCCcHHHHHHHcC--CHHHHHHHHhCCC
Q psy4222         215 NLLYDSDTPSYIERSDILLDL----YVNT-------------------PDKALNETPLHFAAKFG--SVECVKRLIGCAK  269 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~----~~n~-------------------~d~~~g~TpLH~Aa~~g--~~~vv~~LL~~g~  269 (367)
                      .+++.++..++.+++++|++.    +.+.                   .+. .|+||||+|+..|  +.++|++|+++| 
T Consensus        86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~g-  163 (364)
T 3ljn_A           86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLG-  163 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHT-
T ss_pred             CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcC-
Confidence            667777778888888888887    4333                   334 6888888888888  888888888888 


Q ss_pred             CCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         270 IQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       270 ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++++.+|..|+||||+|+..|+.+.
T Consensus       164 a~~~~~d~~g~t~L~~A~~~g~~~~  188 (364)
T 3ljn_A          164 ASPTAKDKADETPLMRAMEFRNREA  188 (364)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHHH
Confidence            8888888888888888888888764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=2.1e-23  Score=180.85  Aligned_cols=143  Identities=17%  Similarity=0.188  Sum_probs=122.7

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTN  215 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~  215 (367)
                      ++.+++||.||..|+.+.|        ++|++.+....+..+..|+||||+|+..|+.+++++|++.+++.+     ...
T Consensus         3 ~~~~~~l~~A~~~g~~~~v--------~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   74 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAV--------RLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT   74 (179)
T ss_dssp             ----CCHHHHHHHTCHHHH--------HHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             HHHHHHHHHHHHcCCHHHH--------HHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence            4567799999999999999        777777544436788999999999999999999999999998644     456


Q ss_pred             cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      +++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.+
T Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~  152 (179)
T 3f6q_A           75 PLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLREL  152 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHH
Confidence            6777788899999999999987665  55 8999999999999999999999999 999999999999999998766544

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.89  E-value=6e-23  Score=184.60  Aligned_cols=146  Identities=16%  Similarity=0.037  Sum_probs=125.6

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc----ccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC--
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT----ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA--  212 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~----~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~--  212 (367)
                      .+..+.|+||.|+..|+.+++        ++|++.|+++.    ...|..|+||||+|+..|+.+++++|++.+++..  
T Consensus        33 ~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  104 (232)
T 2rfa_A           33 RGAMGETALHIAALYDNLEAA--------MVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR  104 (232)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHH--------HHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHH--------HHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcc
Confidence            445667999999999999999        77777776542    3456789999999999999999999999998643  


Q ss_pred             ----------------CcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHH----HHHHhCCCC
Q psy4222         213 ----------------FTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECV----KRLIGCAKI  270 (367)
Q Consensus       213 ----------------~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv----~~LL~~g~a  270 (367)
                                      ...+++.++..++.+++++|++.|+++.  |. .|+||||+|+..|+.+++    ++|+++| +
T Consensus       105 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-~  182 (232)
T 2rfa_A          105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS-LGNTVLHILILQPNKTFACQMYNLLLSYD-G  182 (232)
T ss_dssp             CCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHTCSCHHHHHHHHHHHHHTT-C
T ss_pred             cCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCChHHHHHHHHHHHhcC-C
Confidence                            4456677777899999999999987665  66 899999999999999988    9999999 7


Q ss_pred             CC------CCCCCCCChHHHHHhcCCcHHH
Q psy4222         271 QT------SVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       271 d~------~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +.      +.+|..|+||||+|+..|+.+.
T Consensus       183 ~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~  212 (232)
T 2rfa_A          183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVM  212 (232)
T ss_dssp             SCSSCCGGGCCCTTSCCHHHHHHHHTCHHH
T ss_pred             chhhhhhhccCCCCCCCHHHHHHHcCCHHH
Confidence            87      6899999999999999998874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=9.3e-23  Score=165.98  Aligned_cols=114  Identities=25%  Similarity=0.309  Sum_probs=102.0

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS  220 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~  220 (367)
                      ....++||+|+..|+.+.+        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++          
T Consensus         5 ~~~~~~l~~A~~~~~~~~v--------~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------   65 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEV--------KDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD----------   65 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHH--------HHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC----------
T ss_pred             cccchHHHHHHHcCCHHHH--------HHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence            3456899999999999999        8888889887 67888999999999999999999999998866          


Q ss_pred             CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                                      ++..|. .|+||||+|+..|+.++|++|+++| ++++.+|.+|+||||+|+..+.
T Consensus        66 ----------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           66 ----------------INAPDK-HHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             ----------------TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCCHHH
T ss_pred             ----------------CCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCCHHH
Confidence                            566677 8999999999999999999999999 9999999999999999965443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.89  E-value=2.1e-22  Score=180.79  Aligned_cols=145  Identities=21%  Similarity=0.212  Sum_probs=129.5

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~  213 (367)
                      .+..+.|+||.|+..|+.+.|        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++..     .
T Consensus        36 ~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  106 (231)
T 3aji_A           36 TDQDSRTALHWACSAGHTEIV--------EFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG  106 (231)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHH--------HHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCCCCHHHHHHHcCcHHHH--------HHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345567899999999999999        8999999888 5788899999999999999999999999988643     4


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      ..+++.+...++.+++++|++.|+++.  +. .|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++
T Consensus       107 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~  184 (231)
T 3aji_A          107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEER  184 (231)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHHHCCC
Confidence            556777778899999999999987665  55 8999999999999999999999999 9999999999999999999998


Q ss_pred             HHH
Q psy4222         292 LEN  294 (367)
Q Consensus       292 ~~~  294 (367)
                      .+.
T Consensus       185 ~~~  187 (231)
T 3aji_A          185 VEE  187 (231)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            774

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.89  E-value=1.1e-22  Score=181.98  Aligned_cols=201  Identities=14%  Similarity=0.045  Sum_probs=142.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCC--------CCCcc
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN--------PAFTN  215 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d--------~~~~~  215 (367)
                      .|+||.||..|+.+.|        ++|++.|.+.....+..|+||||+|+..|+.+++++|++.+++        .....
T Consensus         3 ~t~L~~A~~~g~~~~v--------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t   74 (228)
T 2dzn_A            3 NYPLHQACMENEFFKV--------QELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT   74 (228)
T ss_dssp             CCHHHHHHHTTCHHHH--------HHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCC
T ss_pred             ccHHHHHHHhCCHHHH--------HHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCC
Confidence            3689999999999999        7777777666555788899999999999999999999999833        33455


Q ss_pred             cccccCCCChHHHHHHHHhcC--CCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         216 LLYDSDTPSYIERSDILLDLY--VNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~--~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      +++.++..++.+++++|++.|  .+..  +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+
T Consensus        75 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~  152 (228)
T 2dzn_A           75 PFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGS  152 (228)
T ss_dssp             HHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCcccccCCc-CCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCC
Confidence            667777788899999999887  5444  55 7999999999999999999999998 8999999999999999998888


Q ss_pred             HHHHHhhhchHHHHhccCCCCCCCCCCCCccccchHHHhccCCCC--ccccc-CCCCCCCCCCCcccccccceecc
Q psy4222         292 LENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVNFDT--LSLSS-HSNGSPESNSSSVTSMSHLLIEK  364 (367)
Q Consensus       292 ~~~ll~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~--~sl~s-~~~~s~~s~~s~~~s~~~~~~~~  364 (367)
                      .+.+-     .++...     ...++.......+|++..+.....  ..+-- ..+..+...+....+..|+.+++
T Consensus       153 ~~~v~-----~Ll~~g-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          153 LKLIE-----LLCGLG-----KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHHHH-----HHHTTT-----CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             HHHHH-----HHHhcC-----cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            76431     111111     012233344556677766553322  22222 22334444444455555655543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.89  E-value=1.8e-22  Score=181.94  Aligned_cols=147  Identities=20%  Similarity=0.187  Sum_probs=93.8

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Cc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FT  214 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~  214 (367)
                      +..+.|+||.||..|+.+.|+.++    +++...|.++ +.++..|+||||+|+..|+.+++++|++.+++..     ..
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   80 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLV----NLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ   80 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHH----HHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHH----HHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            445567777777777777775555    4444456555 4556667777777777777777777777766532     23


Q ss_pred             ccccccCCCChHHHHHHHHhcCC------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCChHHHHHh
Q psy4222         215 NLLYDSDTPSYIERSDILLDLYV------NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN-KEGKTPLDSSS  287 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~~~------n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n-~~G~TPL~iA~  287 (367)
                      .+++.++..++.+++++|++.+.      +..+. .|+||||+|+..|+.+++++|+++| ++++.++ ..|.||||+|+
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~  158 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAV  158 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCc-CCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHH
Confidence            44555555666667777766643      22344 6667777777777777777777776 6666666 56777777777


Q ss_pred             cCCcHH
Q psy4222         288 GLDLLE  293 (367)
Q Consensus       288 ~~g~~~  293 (367)
                      ..|+.+
T Consensus       159 ~~~~~~  164 (241)
T 1k1a_A          159 ENNSLS  164 (241)
T ss_dssp             HTTCHH
T ss_pred             HcCCHH
Confidence            666655

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.89  E-value=8.1e-23  Score=187.01  Aligned_cols=147  Identities=16%  Similarity=0.105  Sum_probs=130.7

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~  213 (367)
                      .+..+.|+||.|+..|+.+.+        ++|++.|....+..+..|+||||+|+..|+.+++++|++.+++.+     .
T Consensus        86 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g  157 (253)
T 1yyh_A           86 QDNMGRTPLHAAVSADAQGVF--------QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG  157 (253)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHH--------HHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTS
T ss_pred             CCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCC
Confidence            445667999999999999999        888888874446788999999999999999999999999988643     5


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      ..+++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+
T Consensus       158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~  235 (253)
T 1yyh_A          158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMH  235 (253)
T ss_dssp             CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC-CCccccccCCCCHHHHHHHcCC
Confidence            566777788899999999999987665  55 8999999999999999999999999 9999999999999999999999


Q ss_pred             HHHH
Q psy4222         292 LENY  295 (367)
Q Consensus       292 ~~~l  295 (367)
                      .+.+
T Consensus       236 ~~i~  239 (253)
T 1yyh_A          236 HDIV  239 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8743

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.88  E-value=3.7e-22  Score=179.90  Aligned_cols=146  Identities=20%  Similarity=0.197  Sum_probs=129.1

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC----C----
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG----N----  210 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~----d----  210 (367)
                      .+..+.|+||.|+..|+.+++        ++|++.|+++ +..+..|+||||+|+..|+.+++++|++.++    +    
T Consensus        42 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  112 (241)
T 1k1a_A           42 YNNLRQTPLHLAVITTLPSVV--------RLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR  112 (241)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC
T ss_pred             ccccCCCHHHHHHHcCCHHHH--------HHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc
Confidence            445567899999999999999        9999999888 5778899999999999999999999999986    2    


Q ss_pred             -CCCcccccccCCCChHHHHHHHHhcCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHh
Q psy4222         211 -PAFTNLLYDSDTPSYIERSDILLDLYVNTPDK--ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS  287 (367)
Q Consensus       211 -~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~--~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~  287 (367)
                       .....+++.++..++.+++++|++.|++....  ..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+
T Consensus       113 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~  191 (241)
T 1k1a_A          113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSAS  191 (241)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHH
T ss_pred             CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH
Confidence             23455667777788999999999999777632  27999999999999999999999999 999999999999999999


Q ss_pred             cCCcHHH
Q psy4222         288 GLDLLEN  294 (367)
Q Consensus       288 ~~g~~~~  294 (367)
                      ..|+.+.
T Consensus       192 ~~~~~~~  198 (241)
T 1k1a_A          192 GRGLLPL  198 (241)
T ss_dssp             HHTCHHH
T ss_pred             HcCCHHH
Confidence            9998774

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.88  E-value=7.4e-23  Score=183.15  Aligned_cols=145  Identities=19%  Similarity=0.183  Sum_probs=102.7

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcC--CCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhc--CC-----C
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSG--DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEII--GN-----P  211 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g--~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~--~d-----~  211 (367)
                      ..+.|+||+|+..|+.+.+        ++|++.|  .++....+..|+||||+|+..|+.+++++|++.+  .+     .
T Consensus        34 ~~g~t~L~~A~~~~~~~~v--------~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  105 (228)
T 2dzn_A           34 QDGRIPLHWSVSFQAHEIT--------SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN  105 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHH--------HHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT
T ss_pred             CCCCCHHHHHHHcCCHHHH--------HHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc
Confidence            3445778888888888777        7777777  4443225677778888888888888888887776  33     2


Q ss_pred             CCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcC
Q psy4222         212 AFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGL  289 (367)
Q Consensus       212 ~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~  289 (367)
                      ....+++.+...++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|+++|.++++.+|..|+||||+|+..
T Consensus       106 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~  184 (228)
T 2dzn_A          106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE  184 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHhHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHc
Confidence            23445556666777777887777775554  44 6778888888888888888888777667777777888888888877


Q ss_pred             CcHHH
Q psy4222         290 DLLEN  294 (367)
Q Consensus       290 g~~~~  294 (367)
                      |+.+.
T Consensus       185 ~~~~~  189 (228)
T 2dzn_A          185 GHGDA  189 (228)
T ss_dssp             TCHHH
T ss_pred             CCHHH
Confidence            77653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=6.1e-23  Score=170.18  Aligned_cols=118  Identities=20%  Similarity=0.208  Sum_probs=106.0

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccc
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  218 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~  218 (367)
                      .+..+.|+||.|+..|+.+.+        ++|++.|.++ +.++..|+||||+|+. |+.+++++|++.+++        
T Consensus         8 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~--------   69 (136)
T 1d9s_A            8 LGGSSDAGLATAAARGQVETV--------RQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE--------   69 (136)
T ss_dssp             CCCCCSCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC--------
T ss_pred             CCCCCccHHHHHHHcCCHHHH--------HHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC--------
Confidence            445567899999999999999        8888999888 5778899999999999 999999999998876        


Q ss_pred             ccCCCChHHHHHHHHhcCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         219 DSDTPSYIERSDILLDLYVNTPDKAL-NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~d~~~-g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                                        ++..+. . |+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus        70 ------------------~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~  126 (136)
T 1d9s_A           70 ------------------PNCADP-ATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDI  126 (136)
T ss_dssp             ------------------SSCCBT-TTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHH
T ss_pred             ------------------CCCcCC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHH
Confidence                              555566 6 999999999999999999999999 9999999999999999999888764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.88  E-value=2.2e-22  Score=181.27  Aligned_cols=149  Identities=21%  Similarity=0.273  Sum_probs=122.0

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~  213 (367)
                      .+..+.|+||.|+..|+.+.+        ++|++.|....+..+..|+||||+|+..|+.+++++|++.+++..     .
T Consensus        73 ~~~~g~t~L~~A~~~~~~~~~--------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  144 (237)
T 3b7b_A           73 KDAEGSTCLHLAAKKGHYEVV--------QYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEE  144 (237)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHH--------HHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCCCcHHHHHHHcCCHHHH--------HHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC
Confidence            345566899999999999999        888888733336778889999999999999999999999887643     3


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      ..+++.+...++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++
T Consensus       145 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          145 NICLHWAAFSGCVDIAEILLAAKCDLHAVNI-HGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHH
Confidence            455666677788899999999886665  55 7899999999999999999999998 8999999999999999999988


Q ss_pred             HHHHHh
Q psy4222         292 LENYLH  297 (367)
Q Consensus       292 ~~~ll~  297 (367)
                      +..++.
T Consensus       223 ~~~~~~  228 (237)
T 3b7b_A          223 VWSALQ  228 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.88  E-value=3.1e-23  Score=197.64  Aligned_cols=146  Identities=23%  Similarity=0.312  Sum_probs=121.8

Q ss_pred             CCCCC-CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCC---HHHHHHHHhhc-
Q psy4222         134 SPFKS-LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN---PAMTEMLLEII-  208 (367)
Q Consensus       134 ~~f~~-~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~---~~iv~~LL~~~-  208 (367)
                      .++.. .+..+.|+||+||..|+.++|        ++|++.|+++ +.+|..|+||||+|+..|+   .++++.|++.+ 
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v--------~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~  191 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELV--------KHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  191 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhh
Confidence            34444 467788999999999999999        9999999999 6889999999999999998   67777777765 


Q ss_pred             C-----CCCCcccccccCC----CChHHHHHHHHhc--------------------------------------------
Q psy4222         209 G-----NPAFTNLLYDSDT----PSYIERSDILLDL--------------------------------------------  235 (367)
Q Consensus       209 ~-----d~~~~~~~~~~~~----~~~~~~v~~Ll~~--------------------------------------------  235 (367)
                      +     +.....+++.++.    .++.+++++|++.                                            
T Consensus       192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~L  271 (327)
T 1sw6_A          192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI  271 (327)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred             ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHH
Confidence            2     3344555555544    7888888888765                                            


Q ss_pred             ---CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCC
Q psy4222         236 ---YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD  290 (367)
Q Consensus       236 ---~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g  290 (367)
                         +++..|. .|+||||+||..|+.++|++||++| ++++.+|.+|+||||+|+..|
T Consensus       272 l~~~~n~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          272 IANMLNAQDS-NGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHTTTCCCT-TSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred             HHhCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence               5788888 9999999999999999999999999 999999999999999998764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.88  E-value=3.5e-22  Score=178.35  Aligned_cols=145  Identities=16%  Similarity=0.113  Sum_probs=128.6

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Cc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FT  214 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~  214 (367)
                      +..+.|+||.|+..|+.+++        ++|++.+.......+..|+||||+|+..|+.+++++|++.+++.+     ..
T Consensus        55 ~~~g~t~L~~A~~~~~~~~v--------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  126 (223)
T 2f8y_A           55 DNMGRTPLHAAVSADAQGVF--------QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK  126 (223)
T ss_dssp             CTTSCCHHHHHHHTTCHHHH--------HHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSC
T ss_pred             CCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCC
Confidence            34556899999999999999        888888874446778899999999999999999999999987643     45


Q ss_pred             ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222         215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL  292 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~  292 (367)
                      .+++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~  204 (223)
T 2f8y_A          127 SALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHH  204 (223)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcch
Confidence            66777788899999999999987665  55 8999999999999999999999999 99999999999999999999987


Q ss_pred             HH
Q psy4222         293 EN  294 (367)
Q Consensus       293 ~~  294 (367)
                      +.
T Consensus       205 ~i  206 (223)
T 2f8y_A          205 DI  206 (223)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.88  E-value=6.8e-22  Score=184.26  Aligned_cols=144  Identities=21%  Similarity=0.180  Sum_probs=112.4

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTN  215 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~  215 (367)
                      ..+.|+||.||..|+++.|        ++|++.|+++ +..+..|+||||+||..|+.+++++|++.|++.+     ...
T Consensus        38 ~~~~t~l~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  108 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEV--------LRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI  108 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHH--------HHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cCCccHHHHHHHcCCHHHH--------HHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence            4456788888888888888        7777777666 4567777777777777777777777777776532     344


Q ss_pred             cccccCCCChHHHHHHHHhcCCCCC--CC---------------------------------------------------
Q psy4222         216 LLYDSDTPSYIERSDILLDLYVNTP--DK---------------------------------------------------  242 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~---------------------------------------------------  242 (367)
                      +++.++..++.+++++|++.|+++.  +.                                                   
T Consensus       109 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (299)
T 1s70_B          109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG  188 (299)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhcc
Confidence            5666666677777777777765443  11                                                   


Q ss_pred             --------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         243 --------ALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       243 --------~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                              ..|.||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus       189 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~  247 (299)
T 1s70_B          189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEA  247 (299)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHH
Confidence                    15889999999999999999999999 9999999999999999999998874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=3.9e-22  Score=168.43  Aligned_cols=139  Identities=20%  Similarity=0.227  Sum_probs=121.9

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcC-CCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCccc
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSG-DFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNL  216 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g-~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~  216 (367)
                      ..++||.||..|+.+.+        ++|++.. .++ +..+..|+||||+ |..|+.+++++|++.|++.     ....+
T Consensus         2 ~~~~L~~A~~~g~~~~v--------~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   71 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEV--------RRLLHRELVHP-DALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSP   71 (156)
T ss_dssp             HHHHHHHHHHHTCHHHH--------HHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cchHHHHHHHhCCHHHH--------HHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            35899999999999999        7777662 344 5778899999999 9999999999999998864     34566


Q ss_pred             ccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         217 LYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       217 ~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.++|++|+++  ++++.+|..|.||||+|+..|+.+.
T Consensus        72 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~  148 (156)
T 1bd8_A           72 VHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            777788899999999999987665  55 899999999999999999999998  7999999999999999999998774

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.88  E-value=9.4e-23  Score=186.68  Aligned_cols=144  Identities=15%  Similarity=0.116  Sum_probs=124.2

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccC----CCCCCcHHHHHH---HcCCHHHHHHHHhhcCCC---
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILH----EGCRYNALHVST---KAVNPAMTEMLLEIIGNP---  211 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~----d~~G~TpLh~Aa---~~g~~~iv~~LL~~~~d~---  211 (367)
                      -+.++||.||+.|+.+.|+.++    ++|+..|.+.. ..    +..|+||||+|+   ..|+.+++++|++.+++.   
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll----~~l~~~~~~~~-~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~   78 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLL----SFLLTHKKRLT-DEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM   78 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHH----HHHHHHTCCTT-SGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred             chHHHHHHHHHhCCHHHHHHHH----HHHHhcCCCcc-hhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch
Confidence            3568999999999999998888    78888887773 33    377999999999   779999999999987532   


Q ss_pred             -------------CCcccccccCCCChHHHHHHHHhcCCCCCCC---------------CCCCcHHHHHHHcCCHHHHHH
Q psy4222         212 -------------AFTNLLYDSDTPSYIERSDILLDLYVNTPDK---------------ALNETPLHFAAKFGSVECVKR  263 (367)
Q Consensus       212 -------------~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~---------------~~g~TpLH~Aa~~g~~~vv~~  263 (367)
                                   ....+++.++..++.+++++|++.|+++...               ..|+||||+||..|+.++|++
T Consensus        79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                         4566777788899999999999999777643               269999999999999999999


Q ss_pred             HHh---CCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         264 LIG---CAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       264 LL~---~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      |++   +| ++++.+|..|+||||+|+..++
T Consensus       159 Ll~~~~~g-a~~~~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          159 LTENGHKQ-ADLRRQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             HHHCSSCC-CCTTCCCTTSCCHHHHHHHHCC
T ss_pred             HHhccccC-CCCcccCCCCCcHHHHHHHhcc
Confidence            999   88 9999999999999999996544

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.88  E-value=2e-22  Score=186.18  Aligned_cols=149  Identities=16%  Similarity=0.121  Sum_probs=124.5

Q ss_pred             CCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc---ccCCCCCCcHHHHHHHc---CCHHHHHHHHhhcCC-
Q psy4222         138 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT---ILHEGCRYNALHVSTKA---VNPAMTEMLLEIIGN-  210 (367)
Q Consensus       138 ~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~---~~~d~~G~TpLh~Aa~~---g~~~iv~~LL~~~~d-  210 (367)
                      ..+..+.|+||.||+.|+++.|+.++    +++.+.+.+..   ...+..|+||||+|+..   |+.+++++||+.+++ 
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLL----PFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHH----HHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHH----HHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            35567789999999999999996666    55555665442   14578899999999987   999999999999753 


Q ss_pred             ---------------CCCcccccccCCCChHHHHHHHHhcCCCCCCCC---------------CCCcHHHHHHHcCCHHH
Q psy4222         211 ---------------PAFTNLLYDSDTPSYIERSDILLDLYVNTPDKA---------------LNETPLHFAAKFGSVEC  260 (367)
Q Consensus       211 ---------------~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~---------------~g~TpLH~Aa~~g~~~v  260 (367)
                                     .....+++.++..++.+++++|++.|+++....               .|+||||+||..|+.++
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence                           356677777888899999999999998877442               59999999999999999


Q ss_pred             HHHHHh---CCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         261 VKRLIG---CAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       261 v~~LL~---~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      |++|++   +| ++++.+|..|+||||+|+..++
T Consensus       164 v~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          164 VKFLLQNSWQP-ADISARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             HHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCC
T ss_pred             HHHHHhcccCC-CCceeeCCCCCcHHHHHHHccC
Confidence            999999   88 9999999999999999998665

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.88  E-value=1.5e-22  Score=181.62  Aligned_cols=144  Identities=25%  Similarity=0.203  Sum_probs=127.2

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~  213 (367)
                      .+..+.|+||.|+..|+.+.+        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++..     .
T Consensus        69 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  139 (231)
T 3aji_A           69 KDDAGWSPLHIAASAGXDEIV--------KALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD  139 (231)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCCCCCHHHHHHHcCHHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            345567899999999999999        9999999888 5778899999999999999999999999988643     4


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      ..+++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++
T Consensus       140 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccCC-CCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhHH
Confidence            456777777899999999999987665  56 8999999999999999999999999 9999999999999999987655


Q ss_pred             HH
Q psy4222         292 LE  293 (367)
Q Consensus       292 ~~  293 (367)
                      .+
T Consensus       218 ~~  219 (231)
T 3aji_A          218 LI  219 (231)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=1.1e-22  Score=168.55  Aligned_cols=118  Identities=27%  Similarity=0.349  Sum_probs=106.5

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  219 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~  219 (367)
                      +..+.|+||.|+..|+.+.+        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++         
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------   68 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSV--------EYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---------   68 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHH--------HHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred             CCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---------
Confidence            45567999999999999999        8999999888 67889999999999999999999999998866         


Q ss_pred             cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                                       ++..+. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..+..+.
T Consensus        69 -----------------~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~  124 (137)
T 3c5r_A           69 -----------------VNTTGY-QNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSL  124 (137)
T ss_dssp             -----------------TTCCCG-GGCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHH
T ss_pred             -----------------ccCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHH
Confidence                             555666 8999999999999999999999999 9999999999999999997766553

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.88  E-value=9.5e-23  Score=190.10  Aligned_cols=139  Identities=22%  Similarity=0.240  Sum_probs=120.3

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-----  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-----  213 (367)
                      .+..+.|+||.||..|+.++|        ++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++...     
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g  139 (299)
T 1s70_B           69 ANVDGLTALHQACIDDNVDMV--------KFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG  139 (299)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCCCCCHHHHHHHcCCHHHH--------HHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC
Confidence            345567999999999999999        9999999988 67888999999999999999999999999875321     


Q ss_pred             ------------------------------------------------------------cccccccCCCChHHHHHHHH
Q psy4222         214 ------------------------------------------------------------TNLLYDSDTPSYIERSDILL  233 (367)
Q Consensus       214 ------------------------------------------------------------~~~~~~~~~~~~~~~v~~Ll  233 (367)
                                                                                  ..+++.++..++.+++++|+
T Consensus       140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  219 (299)
T 1s70_B          140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI  219 (299)
T ss_dssp             CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH
Confidence                                                                        12333444567889999999


Q ss_pred             hcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222         234 DLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG  288 (367)
Q Consensus       234 ~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~  288 (367)
                      +.|+++.  |. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+.
T Consensus       220 ~~g~d~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          220 QARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCS
T ss_pred             HcCCCCCCcCC-CCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHH
Confidence            9986665  56 8999999999999999999999999 9999999999999999975

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.87  E-value=1.7e-22  Score=188.04  Aligned_cols=147  Identities=17%  Similarity=0.131  Sum_probs=129.8

Q ss_pred             CCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHH-----HcCCHHHHHHHHhhcCCC-
Q psy4222         138 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVST-----KAVNPAMTEMLLEIIGNP-  211 (367)
Q Consensus       138 ~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa-----~~g~~~iv~~LL~~~~d~-  211 (367)
                      ..+..+.|+||+||..|+.+.|        ++|++.|+...+..+..|+||||+|+     ..++.+++++|++.+.+. 
T Consensus       106 ~~d~~g~T~Lh~A~~~g~~~~v--------~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~  177 (276)
T 4hbd_A          106 IADSNGNTALHYSVSHANFPVV--------QQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA  177 (276)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHH--------HHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHH--------HHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc
Confidence            3456678999999999999999        99999998444788999999999999     678999999999998753 


Q ss_pred             ----CCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCChHHH
Q psy4222         212 ----AFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLD  284 (367)
Q Consensus       212 ----~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~-~g~ad~~~~n~~G~TPL~  284 (367)
                          ....+++.++..++.+++++|++.|++++  |. .|+||||+||..|+.++|++|++ .| ++++.+|..|+||||
T Consensus       178 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~~d~~g~TpL~  255 (276)
T 4hbd_A          178 KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMCACEHGHKEIAGLLLAVPS-CDISLTDRDGSTALM  255 (276)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHTSTT-CCTTCCCTTSCCHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCC-CCCcCcCCCCCCHHH
Confidence                35566777888899999999999997665  66 99999999999999999999999 77 999999999999999


Q ss_pred             HHhcCCcHHH
Q psy4222         285 SSSGLDLLEN  294 (367)
Q Consensus       285 iA~~~g~~~~  294 (367)
                      +|+..|+.+.
T Consensus       256 ~A~~~g~~~i  265 (276)
T 4hbd_A          256 VALDAGQSEI  265 (276)
T ss_dssp             HHHHHTCHHH
T ss_pred             HHHHcCCHHH
Confidence            9999998774

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.87  E-value=4.7e-23  Score=188.45  Aligned_cols=145  Identities=19%  Similarity=0.075  Sum_probs=124.5

Q ss_pred             ChhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCccc----------cCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy4222         140 KSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTI----------LHEGCRYNALHVSTKAVNPAMTEMLLE  206 (367)
Q Consensus       140 ~~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~~----------~~d~~G~TpLh~Aa~~g~~~iv~~LL~  206 (367)
                      +..+.|+||+|+..   |+.++|        ++|++.|+++..          ..|..|+||||+|+..|+.+++++|++
T Consensus        40 d~~g~t~L~~A~~~~~~g~~~~v--------~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~  111 (256)
T 2etb_A           40 GSTGKTCLMKAVLNLQDGVNACI--------MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE  111 (256)
T ss_dssp             TTTTBCHHHHHHHTCBTTBCTTH--------HHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHccccchHHHH--------HHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHH
Confidence            45667999999999   999999        777777655421          124679999999999999999999999


Q ss_pred             hcCCCC------------------CcccccccCCCChHHHHHHHHh---cCCCCC--CCCCCCcHHHHHHH--cCCHH--
Q psy4222         207 IIGNPA------------------FTNLLYDSDTPSYIERSDILLD---LYVNTP--DKALNETPLHFAAK--FGSVE--  259 (367)
Q Consensus       207 ~~~d~~------------------~~~~~~~~~~~~~~~~v~~Ll~---~~~n~~--d~~~g~TpLH~Aa~--~g~~~--  259 (367)
                      .|++.+                  ...+++.++..++.+++++|++   .|++++  |. .|+||||+||.  .++.+  
T Consensus       112 ~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~-~g~TpLh~A~~~~~~~~~~~  190 (256)
T 2etb_A          112 NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS-LGNTVLHALVMIADNSPENS  190 (256)
T ss_dssp             TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHH
T ss_pred             cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCC-CCCCHHHHHHHcccCCchhh
Confidence            998643                  5566777788899999999999   886665  66 89999999999  78888  


Q ss_pred             -----HHHHHHhCCCCCC-------CCCCCCCChHHHHHhcCCcHHH
Q psy4222         260 -----CVKRLIGCAKIQT-------SVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       260 -----vv~~LL~~g~ad~-------~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                           +|++|+++| +++       +.+|..|+||||+|+..|+.+.
T Consensus       191 ~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  236 (256)
T 2etb_A          191 ALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI  236 (256)
T ss_dssp             HHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence                 999999999 899       9999999999999999998774

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.87  E-value=8e-22  Score=173.13  Aligned_cols=140  Identities=15%  Similarity=0.121  Sum_probs=121.2

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCC-CccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccc
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGD-FPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTN  215 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~-~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~  215 (367)
                      .+.++||.||..|+.+.|        ++|+..+. ++ +..+..|+||||+|+..|+.+++++|++.|++.+     ...
T Consensus         4 ~~~~~L~~A~~~g~~~~v--------~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   74 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKV--------KEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDS   74 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHH--------HHHHTCTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccccHHHHHHHhccHHHH--------HHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            456899999999999999        77776665 44 6778899999999999999999999999998744     345


Q ss_pred             cccccCCCChHHHHHHHHh-cC--CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         216 LLYDSDTPSYIERSDILLD-LY--VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~-~~--~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      +++.++..++.+++++|++ .+  ++..+. .|.||||+|+..|+.+++++|+++|.++++.+|..|+||||+|+..+.
T Consensus        75 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  152 (201)
T 3hra_A           75 PYLYAGAQGRTEILAYMLKHATPDLNKHNR-YGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE  152 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCTTCCCT-TSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC
T ss_pred             HHHHHHHcCCHHHHHHHHhccCcccccccC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc
Confidence            6677778899999999994 44  344466 899999999999999999999999978999999999999999998776

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.87  E-value=7.7e-22  Score=187.04  Aligned_cols=158  Identities=18%  Similarity=0.179  Sum_probs=130.5

Q ss_pred             hhhhhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHH
Q psy4222         124 MSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEM  203 (367)
Q Consensus       124 ~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~  203 (367)
                      +..++..+.  +....+..+.|+||.|+..|+.+++        ++|++.|+++ +..+..|+||||+|+..|+.+++++
T Consensus        74 v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~iv--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~  142 (351)
T 3utm_A           74 VQLLLQHGA--DVHAKDKGGLVPLHNACSYGHYEVT--------ELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSL  142 (351)
T ss_dssp             HHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCC--CCCccCCCCCcHHHHHHHCCCHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            333444433  3444556778999999999999999        9999999888 5788899999999999999999999


Q ss_pred             HHhhcCCCCCc-----------------------------------------------------------ccccccCCC-
Q psy4222         204 LLEIIGNPAFT-----------------------------------------------------------NLLYDSDTP-  223 (367)
Q Consensus       204 LL~~~~d~~~~-----------------------------------------------------------~~~~~~~~~-  223 (367)
                      |++.++++...                                                           .+++.+... 
T Consensus       143 Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~  222 (351)
T 3utm_A          143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL  222 (351)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCC
T ss_pred             HHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHh
Confidence            99998875431                                                           222222222 


Q ss_pred             --ChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         224 --SYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       224 --~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                        +..+++++|++.|++++  +. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus       223 ~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~~~~~~  295 (351)
T 3utm_A          223 HPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQT  295 (351)
T ss_dssp             STTHHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CccHHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHH
Confidence              67899999999987665  55 8999999999999999999999999 9999999999999999999998874

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.87  E-value=6e-23  Score=191.84  Aligned_cols=142  Identities=15%  Similarity=0.055  Sum_probs=128.7

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C-ccc
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F-TNL  216 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~-~~~  216 (367)
                      +.|+||+|+..|+.++|        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.|++.+     . ..+
T Consensus        62 g~t~L~~A~~~g~~~~v--------~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~  132 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIV--------KILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS  132 (285)
T ss_dssp             TCCHHHHHTTSSSCHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSH
T ss_pred             CCCHHHHHHHcCCHHHH--------HHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Confidence            56899999999999999        9999999998 5788999999999999999999999999988643     2 466


Q ss_pred             ccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChH-HHHHhcCCcHHH
Q psy4222         217 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP-LDSSSGLDLLEN  294 (367)
Q Consensus       217 ~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TP-L~iA~~~g~~~~  294 (367)
                      ++.++..++.+++++|++.|.+..+...|+||||+|+..|+.++|++|+++| ++++.+|..|+|| ||+|+..++.+.
T Consensus       133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~  210 (285)
T 3kea_A          133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEM  210 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHH
Confidence            7778888999999999999988876558999999999999999999999999 9999999999998 999999988764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.86  E-value=7.7e-22  Score=184.17  Aligned_cols=138  Identities=17%  Similarity=0.136  Sum_probs=64.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC----Ccccccc
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA----FTNLLYD  219 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~----~~~~~~~  219 (367)
                      .|+||.|+..|+.++|        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++..    ...+++.
T Consensus        93 ~t~L~~A~~~g~~~~v--------~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~  163 (285)
T 3d9h_A           93 VSPLHEACLGGHLSCV--------KILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHE  163 (285)
T ss_dssp             CCHHHHHHHTTCHHHH--------HHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHH
T ss_pred             CCHHHHHHHCCcHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHH
Confidence            3455555555555555        4444444444 3444445555555555555555555555444321    2233333


Q ss_pred             cCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         220 SDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      ++..++.+++++|++.|+++.  +. .|+||||+|+..|+.++|++|+++| ++++. |..|+||||+|+..++.+
T Consensus       164 A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~-~~~g~t~L~~A~~~~~~~  236 (285)
T 3d9h_A          164 AARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVKKLLESG-ADVNQ-GKGQDSPLHAVVRTASEE  236 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCBT-TTBCHHHHHHHTTCHHHHHHHHHTT-CCTTC-CBTTBCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHCC-CCCCC-CCCCCCHHHHHHHcCCHH
Confidence            344444445555554443332  22 4445555555555555555555554 44442 444555555555444443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.86  E-value=1.8e-21  Score=168.40  Aligned_cols=123  Identities=20%  Similarity=0.149  Sum_probs=105.1

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCcc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTN  215 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~  215 (367)
                      ..+.|+||.|+..|+.+.+        ++|++.|+++ +.+|..|+||||+|+..|+.+++++||+.|++.     ...+
T Consensus        35 ~~g~t~l~~a~~~~~~~~~--------~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~T  105 (169)
T 4gpm_A           35 SDGRTPLHHAAENGHKEVV--------KLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT  105 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCCHHHHHHHcCCHHHH--------HHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCC
Confidence            4556899999999999999        8889999998 688999999999999999999999999999864     3456


Q ss_pred             cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q psy4222         216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV  274 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~  274 (367)
                      +++.++..++.+++++|++.|+++.  |. .|+||||+|+.+|+.++|++|+++| |+++.
T Consensus       106 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~G-A~ie~  164 (169)
T 4gpm_A          106 PLHHAAENGHKEVVKLLISKGADVNTSDS-DGRTPLDLAREHGNEEVVKLLEKQG-GWLEH  164 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCcCC
Confidence            7777888899999999999987665  56 8999999999999999999999999 88764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.86  E-value=1.3e-22  Score=183.28  Aligned_cols=145  Identities=17%  Similarity=0.163  Sum_probs=122.7

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCC----CccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC--
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGD----FPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA--  212 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~----~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~--  212 (367)
                      .+..+.|+||+|+..|+.+.+        ++|+..+.    ++ +.++..|+||||+|+..|+.+++++|++.|++..  
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v--------~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   74 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALT--------MEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR   74 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSS--------SCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC
T ss_pred             CCCCCCchhHHHHHcCChhHH--------HHHHHHhhccHHHh-hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            345567899999999999999        77766554    44 5778899999999999999999999999988643  


Q ss_pred             ---CcccccccCCCChHHHHHHHHhcCC--------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCC
Q psy4222         213 ---FTNLLYDSDTPSYIERSDILLDLYV--------NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK-EGK  280 (367)
Q Consensus       213 ---~~~~~~~~~~~~~~~~v~~Ll~~~~--------n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~-~G~  280 (367)
                         ...+++.++..++.+++++|++.+.        +..+. .|+||||+|+..|+.++|++|+++| ++++.++. .|+
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~  152 (236)
T 1ikn_D           75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY-NGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGR  152 (236)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT-TCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCC
Confidence               4566777788899999999999985        34455 8999999999999999999999999 99999998 999


Q ss_pred             hHHHHHhcCCcHHH
Q psy4222         281 TPLDSSSGLDLLEN  294 (367)
Q Consensus       281 TPL~iA~~~g~~~~  294 (367)
                      ||||+|+..|+.+.
T Consensus       153 tpL~~A~~~~~~~~  166 (236)
T 1ikn_D          153 TALHLAVDLQNPDL  166 (236)
T ss_dssp             CHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHH
Confidence            99999999998874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.86  E-value=4.5e-21  Score=182.43  Aligned_cols=139  Identities=19%  Similarity=0.207  Sum_probs=112.2

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCC-CCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC----
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHE-GCRYNALHVSTKAVNPAMTEMLLEIIGNPAF----  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d-~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~----  213 (367)
                      ...++.|+||.||+.|++++|        ++|++.|+++. .++ ..|+||||+||..|+.++|++||++|+++..    
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V--------~~LL~~Gadvn-~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~   91 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLV--------QQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN   91 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHH--------HHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCChHHHHHHHcCCHHHH--------HHHHHCCCCCC-ccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccC
Confidence            345678999999999999999        99999999994 554 5699999999999999999999999875432    


Q ss_pred             ----------------------------------cccccccCCCChHHHHHHHHhcCCCCCC--C---------CCCCcH
Q psy4222         214 ----------------------------------TNLLYDSDTPSYIERSDILLDLYVNTPD--K---------ALNETP  248 (367)
Q Consensus       214 ----------------------------------~~~~~~~~~~~~~~~v~~Ll~~~~n~~d--~---------~~g~Tp  248 (367)
                                                        ..+++.++..++.+++++|++.|+++.-  .         ..|.||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~  171 (337)
T 4g8k_A           92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA  171 (337)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred             CCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence                                              2234444557788899999988866541  1         158899


Q ss_pred             HHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCChHHHHHh
Q psy4222         249 LHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSS  287 (367)
Q Consensus       249 LH~Aa~~g~~~vv~~LL~-~g~ad~~~~n~~G~TPL~iA~  287 (367)
                      ||+||..|+.++|++||+ .| ++++.+|..|.||++.++
T Consensus       172 L~~A~~~g~~~~v~~LL~~~g-ad~n~~d~~g~t~l~~~~  210 (337)
T 4g8k_A          172 LMDAAEKGHVEVLKILLDEMG-ADVNACDNMGRNALIHAL  210 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSC-CCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhccC-CCcCccCCCCCcHHHHHH
Confidence            999999999999999985 46 888888888888888766

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.86  E-value=1.8e-21  Score=188.68  Aligned_cols=152  Identities=19%  Similarity=0.234  Sum_probs=129.1

Q ss_pred             CCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhc---C-
Q psy4222         134 SPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEII---G-  209 (367)
Q Consensus       134 ~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~---~-  209 (367)
                      .+....+..+.|+||.|+..|+.++|        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+   . 
T Consensus       157 a~vn~~d~~g~TpL~~A~~~g~~~iv--------~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  227 (373)
T 2fo1_E          157 ADVNAMDCDENTPLMLAVLARRRRLV--------AYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD  227 (373)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHH--------HHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT
T ss_pred             CCCcCCCCCCCCHHHHHHHcChHHHH--------HHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC
Confidence            34555667788999999999999999        9999999998 578899999999999999999999999976   2 


Q ss_pred             ----CCCCcccccccCCCC---hHHHHHHHHhcCCCCC----------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy4222         210 ----NPAFTNLLYDSDTPS---YIERSDILLDLYVNTP----------DKALNETPLHFAAKFGSVECVKRLIGCAKIQT  272 (367)
Q Consensus       210 ----d~~~~~~~~~~~~~~---~~~~v~~Ll~~~~n~~----------d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~  272 (367)
                          +.....+++.++..+   +.+++++|++.|+++.          +. .|+||||+||..|+.++|++|++++.+++
T Consensus       228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  306 (373)
T 2fo1_E          228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY-KGRTALHYAAQVSNMPIVKYLVGEKGSNK  306 (373)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSC-CCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred             hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccc-cCCCHHHHHHHhCCHHHHHHHHHhcCCCc
Confidence                334445555555444   8999999999987764          33 79999999999999999999998766899


Q ss_pred             CCCCCCCChHHHHHhcCCcHHHH
Q psy4222         273 SVRNKEGKTPLDSSSGLDLLENY  295 (367)
Q Consensus       273 ~~~n~~G~TPL~iA~~~g~~~~l  295 (367)
                      +.+|..|+||||+|+..|+.+.+
T Consensus       307 n~~d~~g~TpL~~A~~~g~~~iv  329 (373)
T 2fo1_E          307 DKQDEDGKTPIMLAAQEGRIEVV  329 (373)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999988743

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.86  E-value=1.5e-21  Score=187.62  Aligned_cols=139  Identities=22%  Similarity=0.217  Sum_probs=82.0

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhh----cCCC------
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI----IGNP------  211 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~----~~d~------  211 (367)
                      .+.|+||+|+..|+.++|        ++|++.|++..   +..|+||||+|+..|+.+++++|++.    +.+.      
T Consensus        52 ~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  120 (364)
T 3ljn_A           52 FGCTALHLACKFGCVDTA--------KYLASVGEVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNE  120 (364)
T ss_dssp             TCCCHHHHHHHHCCHHHH--------HHHHHHCCCCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTC
T ss_pred             CCCcHHHHHHHcCCHHHH--------HHHHHCCCCcc---ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhh
Confidence            344677777777777777        66666665432   23456666666666666666666665    3221      


Q ss_pred             ----------------CCcccccccCCCC--hHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy4222         212 ----------------AFTNLLYDSDTPS--YIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQ  271 (367)
Q Consensus       212 ----------------~~~~~~~~~~~~~--~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad  271 (367)
                                      ....+++.++..+  +.+++++|++.|+++.  +. .|+||||+||..|+.++|++|+++| ++
T Consensus       121 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g-~~  198 (364)
T 3ljn_A          121 CDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-ADETPLMRAMEFRNREALDLMMDTV-PS  198 (364)
T ss_dssp             CCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHC-SC
T ss_pred             cchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHhcc-cc
Confidence                            1233444444555  6666666666654433  33 5666666666666666666666665 55


Q ss_pred             -----CCCCCCCCChHHHHHhcCCcHH
Q psy4222         272 -----TSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       272 -----~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                           ++.+|..|+||||+|+..|+.+
T Consensus       199 ~~~~~~~~~~~~g~t~L~~A~~~g~~~  225 (364)
T 3ljn_A          199 KSSLRLDYANKQGNSHLHWAILINWED  225 (364)
T ss_dssp             SSSCCTTCCCTTCCCTTHHHHTTTCHH
T ss_pred             cccccccccCCCCCcHHHHHHHcCCHH
Confidence                 6666666666666666666554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.86  E-value=1.6e-22  Score=185.17  Aligned_cols=144  Identities=15%  Similarity=0.056  Sum_probs=121.5

Q ss_pred             hhhHHHHHHHH---HcCCHHHHHHHHhcCChhHHhcCCCc----------cccCCCCCCcHHHHHHHcCCHHHHHHHHhh
Q psy4222         141 SQELVKLRKLI---EKGNLADVRKLVWDNPRYLVSSGDFP----------TILHEGCRYNALHVSTKAVNPAMTEMLLEI  207 (367)
Q Consensus       141 ~~~lt~L~~A~---~~G~~~~v~~ll~~~p~~Ll~~g~~~----------~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~  207 (367)
                      ..+.|+||.|+   ..|+.++|        ++|++.|+++          ....|..|+||||+||..|+.+++++||+.
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v--------~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  115 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTI--------PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK  115 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHH--------HHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHhhcCCHHHH--------HHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            44679999999   77999999        6666665432          123345799999999999999999999999


Q ss_pred             cCCCC-------------------CcccccccCCCChHHHHHHHHh---cCCCCC--CCCCCCcHHHHHHHcCC------
Q psy4222         208 IGNPA-------------------FTNLLYDSDTPSYIERSDILLD---LYVNTP--DKALNETPLHFAAKFGS------  257 (367)
Q Consensus       208 ~~d~~-------------------~~~~~~~~~~~~~~~~v~~Ll~---~~~n~~--d~~~g~TpLH~Aa~~g~------  257 (367)
                      |++.+                   ...+++.++..++.+++++|++   .|+++.  |. .|+||||+||..|+      
T Consensus       116 ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~-~g~TpLh~A~~~~~~~~~~~  194 (260)
T 3jxi_A          116 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALVAIADNTRENT  194 (260)
T ss_dssp             TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSSHHHH
T ss_pred             CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCC-CCCcHHHHHHHhccCchhHH
Confidence            98743                   4456777788899999999999   776665  66 89999999999988      


Q ss_pred             ---HHHHHHHHhCCCCCC-------CCCCCCCChHHHHHhcCCcHHH
Q psy4222         258 ---VECVKRLIGCAKIQT-------SVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       258 ---~~vv~~LL~~g~ad~-------~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                         .+++++|+++| +++       +.+|..|+||||+|+..|+.+.
T Consensus       195 ~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  240 (260)
T 3jxi_A          195 KFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI  240 (260)
T ss_dssp             HHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhC-cccccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence               79999999999 888       7899999999999999998874

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.86  E-value=4.5e-21  Score=176.20  Aligned_cols=144  Identities=19%  Similarity=0.202  Sum_probs=127.4

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTN  215 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~  215 (367)
                      .++.++||.|++.|+++.|        ++|++.|.++....+..|+||||+|+..|+.+++++|++.+++..     ...
T Consensus         3 ~~g~~~L~~A~~~g~~~~v--------~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t   74 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLV--------QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHH--------HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             cccchHHHHHHHcCCHHHH--------HHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC
Confidence            3567899999999999999        888899988854447889999999999999999999999988643     446


Q ss_pred             cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC----------CCCCChHH
Q psy4222         216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVR----------NKEGKTPL  283 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~----------n~~G~TPL  283 (367)
                      +++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|+++| ++++.+          +..|.|||
T Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~t~L  152 (285)
T 1wdy_A           75 PFLLAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATAL  152 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCc-ccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHHhhccCCCcHH
Confidence            6777778899999999999987766  55 8999999999999999999999999 899988          88899999


Q ss_pred             HHHhcCCcHHH
Q psy4222         284 DSSSGLDLLEN  294 (367)
Q Consensus       284 ~iA~~~g~~~~  294 (367)
                      |+|+..|+.+.
T Consensus       153 ~~A~~~~~~~~  163 (285)
T 1wdy_A          153 MDAAEKGHVEV  163 (285)
T ss_dssp             HHHHHHTCHHH
T ss_pred             HHHHHcCCHHH
Confidence            99999988774

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=2.6e-21  Score=156.51  Aligned_cols=115  Identities=29%  Similarity=0.398  Sum_probs=104.6

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCC
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDT  222 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~  222 (367)
                      +.|+||.|+..|+.+.+        ++|++.|.++ +..+..|.||||+|+..|+.+++++|++.+++            
T Consensus         2 g~t~L~~A~~~~~~~~v--------~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------   60 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVV--------KLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------------   60 (126)
T ss_dssp             CCCHHHHHHHHTCHHHH--------HHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------
T ss_pred             CccHHHHHHHcCcHHHH--------HHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC------------
Confidence            34799999999999999        8888888887 57788999999999999999999999998866            


Q ss_pred             CChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         223 PSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       223 ~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                                    ++..+. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus        61 --------------~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~  116 (126)
T 1n0r_A           61 --------------VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEV  116 (126)
T ss_dssp             --------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             --------------CcccCC-CCCcHHHHHHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHH
Confidence                          455566 8999999999999999999999999 9999999999999999999998764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.86  E-value=1.5e-21  Score=192.02  Aligned_cols=143  Identities=23%  Similarity=0.238  Sum_probs=95.9

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFT  214 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~  214 (367)
                      +..+.|+||.||..|+++.|        ++|++.|+++ +..+..|.||||+||..|+.+++++|++.+++.     ...
T Consensus        11 ~~~g~t~L~~Aa~~g~~~~v--------~~Ll~~g~~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~   81 (437)
T 1n11_A           11 GESGLTPLHVASFMGHLPIV--------KNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ   81 (437)
T ss_dssp             ----CCHHHHHHHHTCHHHH--------HHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC
T ss_pred             CCCCCCHHHHHHHCCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence            34456777788877877777        7777777666 456666777777777777777777777776643     234


Q ss_pred             ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222         215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL  292 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~  292 (367)
                      .+++.++..++.+++++|++.|+++.  +. .|.||||+|+..|+.++|++|++++ ++.+..+..|.||||+|+..|+.
T Consensus        82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~g~~  159 (437)
T 1n11_A           82 TPLHCAARIGHTNMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKE-ASQACMTKKGFTPLHVAAKYGKV  159 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHCCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCC-CCCcCCCCCCCCHHHHHHHcCCH
Confidence            45555666677777777777765544  44 6677777777777777777777776 66666677777777777766666


Q ss_pred             H
Q psy4222         293 E  293 (367)
Q Consensus       293 ~  293 (367)
                      +
T Consensus       160 ~  160 (437)
T 1n11_A          160 R  160 (437)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.86  E-value=3.8e-21  Score=182.26  Aligned_cols=173  Identities=15%  Similarity=0.081  Sum_probs=139.1

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~  213 (367)
                      .+..+.|+||+|+..|+.++|        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++.+     .
T Consensus        54 ~d~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g  124 (351)
T 3utm_A           54 SDGRKSTPLHLAAGYNRVRIV--------QLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ  124 (351)
T ss_dssp             SSTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence            345567899999999999999        9999999988 6788999999999999999999999999998644     4


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCCC----------------------------------------------------
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTPD----------------------------------------------------  241 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~d----------------------------------------------------  241 (367)
                      ..+++.++..++.+++++|++.|++...                                                    
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN  204 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence            4567777888999999999999876531                                                    


Q ss_pred             ---CCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHHHhhhchHHHHhccCCCCCCC
Q psy4222         242 ---KALNETPLHFAAKF---GSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLHTKLLDTVAAKKDETNGNT  315 (367)
Q Consensus       242 ---~~~g~TpLH~Aa~~---g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ll~~~~~~~l~~~~~~~~~~t  315 (367)
                         ...|+||||+|+..   +..+++++|+++| ++++.+|..|+||||+|+..|+.+.+-     .++..      |..
T Consensus       205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~-----~Ll~~------ga~  272 (351)
T 3utm_A          205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDVME-----VLHKH------GAK  272 (351)
T ss_dssp             CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHH-----HHHHT------TCC
T ss_pred             ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHHcCCHHHHH-----HHHHC------CCC
Confidence               12678999999999   5589999999999 999999999999999999999887431     11221      122


Q ss_pred             CCCCCccccchHHHhcc
Q psy4222         316 VDQPSVDMISPIEKLCV  332 (367)
Q Consensus       316 ~~~~~~~~~~~l~~~~~  332 (367)
                      ++.......+|++..+.
T Consensus       273 ~n~~d~~g~t~L~~A~~  289 (351)
T 3utm_A          273 MNALDSLGQTALHRAAL  289 (351)
T ss_dssp             TTCCCTTSCCHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHH
Confidence            23334455677776655

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.86  E-value=2.6e-22  Score=185.41  Aligned_cols=145  Identities=15%  Similarity=0.119  Sum_probs=122.4

Q ss_pred             ChhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCcc----------ccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy4222         140 KSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPT----------ILHEGCRYNALHVSTKAVNPAMTEMLLE  206 (367)
Q Consensus       140 ~~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~----------~~~d~~G~TpLh~Aa~~g~~~iv~~LL~  206 (367)
                      +..+.|+||+|+..   |+.++|        ++|++.|+++.          ...|..|+||||+|+..|+.+++++||+
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v--------~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  122 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTI--------ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE  122 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHH--------HHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHhcCChHHH--------HHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34567999999987   999999        66666654321          1146689999999999999999999999


Q ss_pred             hcCCCC-------------------CcccccccCCCChHHHHHHHHh---cCCCCC--CCCCCCcHHHHHHHcCC-----
Q psy4222         207 IIGNPA-------------------FTNLLYDSDTPSYIERSDILLD---LYVNTP--DKALNETPLHFAAKFGS-----  257 (367)
Q Consensus       207 ~~~d~~-------------------~~~~~~~~~~~~~~~~v~~Ll~---~~~n~~--d~~~g~TpLH~Aa~~g~-----  257 (367)
                      .|++.+                   ...+++.++..++.+++++|++   .|+++.  |. .|+||||+||..|+     
T Consensus       123 ~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~-~g~tpLh~A~~~~~~~~~~  201 (273)
T 2pnn_A          123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS-VGNTVLHALVEVADNTVDN  201 (273)
T ss_dssp             TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHH
T ss_pred             CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCC-CCCcHHHHHHHccCcchhH
Confidence            998743                   4556777788899999999999   776665  66 89999999999998     


Q ss_pred             ----HHHHHHHHhCCCCCCC-------CCCCCCChHHHHHhcCCcHHH
Q psy4222         258 ----VECVKRLIGCAKIQTS-------VRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       258 ----~~vv~~LL~~g~ad~~-------~~n~~G~TPL~iA~~~g~~~~  294 (367)
                          .+++++|+++| ++++       .+|..|+||||+|+..|+.+.
T Consensus       202 ~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~i  248 (273)
T 2pnn_A          202 TKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPLALAASSGKIGV  248 (273)
T ss_dssp             HHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHHHHHHHhChHHH
Confidence                89999999999 8886       599999999999999998874

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.86  E-value=5.1e-21  Score=175.86  Aligned_cols=145  Identities=18%  Similarity=0.131  Sum_probs=112.9

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-----  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-----  213 (367)
                      .+..+.|+||.|+..|+.+.+        ++|++.|.++ +..+..|+||||+|+..|+.+++++|++.+++...     
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  138 (285)
T 1wdy_A           68 RKKNGATPFLLAAIAGSVKLL--------KLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK  138 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccH
Confidence            445566888888888888888        7778888777 56677788888888888888888888888776443     


Q ss_pred             ----------cccccccCCCChHHHHHHHHhc-CCCCC--CCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCCCCC
Q psy4222         214 ----------TNLLYDSDTPSYIERSDILLDL-YVNTP--DKALNETPLHFAAKFGS----VECVKRLIGCAKIQTSVRN  276 (367)
Q Consensus       214 ----------~~~~~~~~~~~~~~~v~~Ll~~-~~n~~--d~~~g~TpLH~Aa~~g~----~~vv~~LL~~g~ad~~~~n  276 (367)
                                ..+++.++..++.+++++|++. ++++.  +. .|+||||+|+..|+    .+++++|+++| ++++.+|
T Consensus       139 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~  216 (285)
T 1wdy_A          139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRG  216 (285)
T ss_dssp             HHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCC
T ss_pred             HHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHccccchHHHHHHHHHHcC-CCCCCcC
Confidence                      2556666667788888888876 65444  55 78888888888888    88888888888 8888888


Q ss_pred             CCCChHHHHHhcCCcHHH
Q psy4222         277 KEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       277 ~~G~TPL~iA~~~g~~~~  294 (367)
                      ..|+||||+|+..|+.+.
T Consensus       217 ~~g~t~L~~A~~~~~~~~  234 (285)
T 1wdy_A          217 ERGKTPLILAVEKKHLGL  234 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHH
T ss_pred             CCCCcHHHHHHHcCCHHH
Confidence            888888888888887764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.85  E-value=3e-21  Score=189.96  Aligned_cols=141  Identities=21%  Similarity=0.205  Sum_probs=87.0

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCccc
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNL  216 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~  216 (367)
                      .+.|+||.|+..|+.+.|        ++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++.     ....+
T Consensus       244 ~g~t~L~~A~~~g~~~~v--------~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  314 (437)
T 1n11_A          244 QGVTPLHLAAQEGHAEMV--------ALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP  314 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHH--------HHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH
T ss_pred             CCCCHHHHHHHCCCHHHH--------HHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCH
Confidence            334455555555555555        5566666555 455666666666666666666666666665542     23344


Q ss_pred             ccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         217 LYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       217 ~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      ++.++..++.+++++|++.|++++  +. .|+||||+|+..|+.++|++|+++| ++++.+|.+|+|||++|+..|+.+
T Consensus       315 L~~A~~~g~~~~v~~Ll~~gad~n~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~l~~A~~~g~~~  391 (437)
T 1n11_A          315 LHVASHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGYIS  391 (437)
T ss_dssp             HHHHHHSSCSHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHCChHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCcHH
Confidence            555555666667777776665443  44 6667777777777777777777776 677777777777777777666544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.85  E-value=7.5e-22  Score=167.43  Aligned_cols=115  Identities=23%  Similarity=0.261  Sum_probs=100.9

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccC
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSD  221 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~  221 (367)
                      ...|+||+|+..|+.+.|        ++|++.|.++ +.++..|+||||+|+ .|+.+++++|++.+++           
T Consensus        11 ~~~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-----------   69 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEV--------RALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-----------   69 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHH--------HHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-----------
T ss_pred             cchHHHHHHHHcCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-----------
Confidence            346899999999999999        8888889887 577889999999985 8999999999998866           


Q ss_pred             CCChHHHHHHHHhcCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         222 TPSYIERSDILLDLYVNTPDKALNET-PLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       222 ~~~~~~~v~~Ll~~~~n~~d~~~g~T-pLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                                     ++..+. .|+| |||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus        70 ---------------~~~~d~-~g~ttpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~  126 (156)
T 1bi7_B           70 ---------------PNCADP-ATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDV  126 (156)
T ss_dssp             ---------------CCCCCT-TTCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred             ---------------CCCcCC-CCCcHHHHHHHHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHH
Confidence                           555666 7888 999999999999999999998 8999999999999999998888764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=2.9e-21  Score=168.28  Aligned_cols=113  Identities=18%  Similarity=0.124  Sum_probs=101.6

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  219 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~  219 (367)
                      +.++.|+||.|+..|+.+.+        ++|++ |.++ +.+|..|+||||+|+..|+.+++++|++.+++         
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v--------~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---------  101 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQAL--------SQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD---------  101 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHH--------HHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---------
T ss_pred             CCCCCCHHHHHHHcCCHHHH--------HHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            35678999999999999999        78878 7777 67889999999999999999999999998876         


Q ss_pred             cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcC
Q psy4222         220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGL  289 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~  289 (367)
                                       ++..+...|+||||+|+..|+.+++++|+++| ++++.+|.+|+||||+|+..
T Consensus       102 -----------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          102 -----------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             -----------------TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHH
T ss_pred             -----------------CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHh
Confidence                             55555228999999999999999999999999 99999999999999999864

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.85  E-value=2.8e-21  Score=187.30  Aligned_cols=155  Identities=17%  Similarity=0.096  Sum_probs=131.6

Q ss_pred             hhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcC---CCccccCCCCCCcHHHHHHHcC---CHHH
Q psy4222         127 LAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSG---DFPTILHEGCRYNALHVSTKAV---NPAM  200 (367)
Q Consensus       127 ~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g---~~~~~~~d~~G~TpLh~Aa~~g---~~~i  200 (367)
                      ++..+..  ....+..+.|+||.|+..|+.+++        ++|++.|   .++ +..+..|+||||+|+..+   +.++
T Consensus       185 Ll~~ga~--~~~~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~  253 (373)
T 2fo1_E          185 LMKAGAD--PTIYNKSERSALHQAAANRDFGMM--------VYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVAS  253 (373)
T ss_dssp             HHHTTCC--SCCCCTTCCCHHHHHHHTTCHHHH--------HHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHH
T ss_pred             HHHCCCC--CcccCCCCCCHHHHHHHCCCHHHH--------HHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHH
Confidence            4444333  334456677999999999999999        8888776   455 567889999999999998   8999


Q ss_pred             HHHHHhhcCCCC-------------CcccccccCCCChHHHHHHHHhcC-CCC--CCCCCCCcHHHHHHHcCCHHHHHHH
Q psy4222         201 TEMLLEIIGNPA-------------FTNLLYDSDTPSYIERSDILLDLY-VNT--PDKALNETPLHFAAKFGSVECVKRL  264 (367)
Q Consensus       201 v~~LL~~~~d~~-------------~~~~~~~~~~~~~~~~v~~Ll~~~-~n~--~d~~~g~TpLH~Aa~~g~~~vv~~L  264 (367)
                      +++|++.+++.+             ...+++.++..++.+++++|++.+ +++  .|. .|+||||+|+..|+.++|++|
T Consensus       254 v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~-~g~TpL~~A~~~g~~~iv~~L  332 (373)
T 2fo1_E          254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYL  332 (373)
T ss_dssp             HHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCC-CCCCHHHHHHHcCCHHHHHHH
Confidence            999999998754             356777888899999999999765 444  466 899999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         265 IGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       265 L~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +++| ++++.+|..|+||||+|+..|+.+.
T Consensus       333 l~~g-ad~~~~d~~g~t~l~~A~~~g~~~i  361 (373)
T 2fo1_E          333 IQQG-ASVEAVDATDHTARQLAQANNHHNI  361 (373)
T ss_dssp             HHTT-CCSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred             HHcC-CCccCCCCCCCCHHHHHHHcCCHHH
Confidence            9999 9999999999999999999998874

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.85  E-value=4.3e-21  Score=172.11  Aligned_cols=145  Identities=18%  Similarity=0.220  Sum_probs=123.0

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----cc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-----TN  215 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-----~~  215 (367)
                      ..+.|+||.|+..|+.+++        ++|++.|+++ ...+..|+||||+|+..|+.+++++|++.+++...     ..
T Consensus        74 ~~~~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t  144 (240)
T 3eu9_A           74 DLNSTPLHWATRQGHLSMV--------VQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT  144 (240)
T ss_dssp             TTTBCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CcCCChhHHHHHcCCHHHH--------HHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCc
Confidence            3356899999999999999        8899999888 57788999999999999999999999999876432     23


Q ss_pred             cccccC-CCChHHHHHHHHhcCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222         216 LLYDSD-TPSYIERSDILLDLYVNTPD--KALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL  292 (367)
Q Consensus       216 ~~~~~~-~~~~~~~v~~Ll~~~~n~~d--~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~  292 (367)
                      +++.++ .....+++++|++.+++...  ...|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..++.
T Consensus       145 ~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~  223 (240)
T 3eu9_A          145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNV  223 (240)
T ss_dssp             HHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             HHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcH
Confidence            344443 44457889999999877763  237899999999999999999999999 99999999999999999999988


Q ss_pred             HHH
Q psy4222         293 ENY  295 (367)
Q Consensus       293 ~~l  295 (367)
                      +.+
T Consensus       224 ~~v  226 (240)
T 3eu9_A          224 WMI  226 (240)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            743

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.85  E-value=4.3e-21  Score=174.43  Aligned_cols=130  Identities=23%  Similarity=0.174  Sum_probs=100.8

Q ss_pred             hhhhhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHH
Q psy4222         124 MSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEM  203 (367)
Q Consensus       124 ~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~  203 (367)
                      +..++..+....+.   +...|+||.|+..|+.+.|        ++|++.|+++ +.+|..|+||||+||..|+.+++++
T Consensus        21 ~~~ll~~g~~~~~~---~~~~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~   88 (239)
T 1ycs_B           21 GSERIAHGMRVKFN---PLPLALLLDSSLEGEFDLV--------QRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKF   88 (239)
T ss_dssp             -------------------CHHHHHHHHHHTCHHHH--------HHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHhccCCCcccC---chhhHHHHHHHHcCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            33444444444443   4567899999999999999        8888888877 6778889999999999999999999


Q ss_pred             HHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-hH
Q psy4222         204 LLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK-TP  282 (367)
Q Consensus       204 LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~-TP  282 (367)
                      ||+.+++                          ++..|. .|+||||+||..|+.++|++|+++| ++++.+|..|. ||
T Consensus        89 Ll~~ga~--------------------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~  140 (239)
T 1ycs_B           89 LVQFGVN--------------------------VNAADS-DGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTA  140 (239)
T ss_dssp             HHHHTCC--------------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCH
T ss_pred             HHHcCCC--------------------------CCccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcch
Confidence            9998866                          566677 8999999999999999999999999 99999998887 99


Q ss_pred             HHHH--hcCCcHH
Q psy4222         283 LDSS--SGLDLLE  293 (367)
Q Consensus       283 L~iA--~~~g~~~  293 (367)
                      ||+|  +..|+.+
T Consensus       141 l~~a~~~~~g~~~  153 (239)
T 1ycs_B          141 ADKCEEMEEGYTQ  153 (239)
T ss_dssp             HHHCCSSSTTCCC
T ss_pred             HHHHHHhhhccHH
Confidence            9999  5665544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.84  E-value=8.6e-21  Score=171.88  Aligned_cols=119  Identities=23%  Similarity=0.224  Sum_probs=105.4

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccc
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  218 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~  218 (367)
                      .+....|+||.|+..|+.+.|        ++|++.|.++ +.+|..|+||||+||..|+.+++++|++.|++        
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~--------   79 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVV--------QQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN--------   79 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHH--------HHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------
T ss_pred             cccchhHHHHHHHHcCCHHHH--------HHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--------
Confidence            455678999999999999999        8888889888 67899999999999999999999999998876        


Q ss_pred             ccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCChHHHHH--hcCCcHHH
Q psy4222         219 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN-KEGKTPLDSS--SGLDLLEN  294 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n-~~G~TPL~iA--~~~g~~~~  294 (367)
                                        ++..|. .|+||||+||..|+.++|++|+++| ++++.++ ..|+||||+|  +..|+.+.
T Consensus        80 ------------------~n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~a~~~~~~~~  138 (229)
T 2vge_A           80 ------------------VNSPDS-HGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKCDPYREGYADC  138 (229)
T ss_dssp             ------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCSSTTCCTGGGCCTTSTTHHHH
T ss_pred             ------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHhcChHHH
Confidence                              566667 8999999999999999999999998 8999886 6999999999  77777664

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.84  E-value=4e-21  Score=172.15  Aligned_cols=117  Identities=23%  Similarity=0.175  Sum_probs=105.9

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhh-cCCCCCccccccc
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEI-IGNPAFTNLLYDS  220 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~-~~d~~~~~~~~~~  220 (367)
                      .+.|+||.||..|+.+.|        ++|++.|.++ +.+|..|+||||+||..|+.+++++|++. +++          
T Consensus        72 ~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----------  132 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWL--------RECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE----------  132 (222)
T ss_dssp             EESCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC----------
T ss_pred             ccccccccccccCcHHHH--------HHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC----------
Confidence            346899999999999999        8888999888 57889999999999999999999999997 655          


Q ss_pred             CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHH
Q psy4222         221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENY  295 (367)
Q Consensus       221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~l  295 (367)
                                      ++..+. .|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..+..+.+
T Consensus       133 ----------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l  189 (222)
T 3ehr_A          133 ----------------LNQQNK-LGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLL  189 (222)
T ss_dssp             ----------------CCCCCT-TSCCHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHH
T ss_pred             ----------------ccccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHH
Confidence                            666677 8999999999999999999999999 99999999999999999988776643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=168.77  Aligned_cols=141  Identities=16%  Similarity=0.091  Sum_probs=123.1

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC------C
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA------F  213 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~------~  213 (367)
                      +..+.++|+.|+..|+++.+        ++|++.|.++ +..+..|.||||+|+..|+.+++++|++.+.+..      .
T Consensus         6 d~~~~~~l~~A~~~g~~~~~--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   76 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERC--------RELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN   76 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTT
T ss_pred             ccccchHHHHHHHcCChHHH--------HHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcC
Confidence            44556789999999999999        8888999887 5778889999999999999999999999988643      3


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                      ..+++.++..++.+++++|++.|++..  +. .|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..+.
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCC
T ss_pred             CChhHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCC
Confidence            456677777889999999999987665  55 8999999999999999999999999 8999999999999999995554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=2e-20  Score=170.79  Aligned_cols=111  Identities=18%  Similarity=0.123  Sum_probs=100.8

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS  220 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~  220 (367)
                      ..+.|+||.|+..|+.+.|        ++|+. |.++ +.+|..|+||||+||..|+.+++++||+.+++          
T Consensus        43 ~~g~t~L~~A~~~g~~~~v--------~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----------  102 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQAL--------SQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD----------  102 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHH--------HHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----------
T ss_pred             cCCCCHHHHHHHcCCHHHH--------HHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC----------
Confidence            4678999999999999999        88888 8777 67889999999999999999999999998876          


Q ss_pred             CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222         221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG  288 (367)
Q Consensus       221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~  288 (367)
                                      ++..+...|+||||+||..|+.++|++|+++| ++++.+|..|+||||+|+.
T Consensus       103 ----------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          103 ----------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELARE  153 (244)
T ss_dssp             ----------------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHH
T ss_pred             ----------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHH
Confidence                            55555228999999999999999999999999 9999999999999999984

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.84  E-value=8.9e-20  Score=173.43  Aligned_cols=152  Identities=18%  Similarity=0.187  Sum_probs=121.7

Q ss_pred             CCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccc---------cCCCCCCcHHHHHHHcCCHHHHHHH
Q psy4222         134 SPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTI---------LHEGCRYNALHVSTKAVNPAMTEML  204 (367)
Q Consensus       134 ~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~---------~~d~~G~TpLh~Aa~~g~~~iv~~L  204 (367)
                      .+....+..+.|+||.|+..|+.+.+        ++|+..|+++..         ..+..|.||||+|+..|+.+++++|
T Consensus       116 ~~~~~~d~~g~t~l~~A~~~~~~~~~--------~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~L  187 (337)
T 4g8k_A          116 ADVNECDFYGFTAFMEAAVYGKVKAL--------KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL  187 (337)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHH--------HHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHH
T ss_pred             chhhhhccCCCCHHHHHHHcCcHHHH--------HHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHH
Confidence            34445566778999999999999999        777787776632         2345699999999999999999999


Q ss_pred             Hhh-cCCCCC------ccccc---ccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q psy4222         205 LEI-IGNPAF------TNLLY---DSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQT  272 (367)
Q Consensus       205 L~~-~~d~~~------~~~~~---~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~  272 (367)
                      |++ |++.+.      ..+++   .........++++|++.|++++  +. .|+||||+|+..|+.++|++|+..+.+++
T Consensus       188 L~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v  266 (337)
T 4g8k_A          188 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEI  266 (337)
T ss_dssp             HHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCG-GGCCHHHHHHHTTCHHHHHHHHTSTTCCT
T ss_pred             HhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhhhhHHHHHHHHhcCCcc
Confidence            975 665432      22222   2234455678999999987665  66 89999999999999999999998755999


Q ss_pred             CCCCCCCChHHHHHhcCCcHHH
Q psy4222         273 SVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       273 ~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +.+|.+|+||||+|+..|+.+.
T Consensus       267 n~~d~~G~TpL~~A~~~g~~~i  288 (337)
T 4g8k_A          267 NDTDSDGKTALLLAVELKLKKI  288 (337)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHH
T ss_pred             cCcCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999998874

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.83  E-value=4e-21  Score=168.83  Aligned_cols=123  Identities=12%  Similarity=0.047  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCC
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDT  222 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~  222 (367)
                      +.|+||+|+..|+.+.-.+++    ++|++.|+++ +.++..|+||||+|+..|+.++                      
T Consensus        38 g~T~Lh~A~~~~~~~~~~~iv----~~Ll~~Gadv-n~~d~~g~TpLh~a~~~~~~~~----------------------   90 (186)
T 3t8k_A           38 KSNILYDVLRNNNDEARYKIS----MFLINKGADI-KSRTKEGTTLFFPLFQGGGNDI----------------------   90 (186)
T ss_dssp             TTTHHHHHTTCSCHHHHHHHH----HHHHHTTCCS-SCCCTTCCCTHHHHHHHCTTCH----------------------
T ss_pred             CCCHHHHHHHcCCcchHHHHH----HHHHHCCCCC-CCCCCCCCcHHHHHHHcCCcch----------------------
Confidence            345555555555543222222    5555555555 3445555555555555554111                      


Q ss_pred             CChHHHHHHHHhcC--CCCCCCCCCC-cHHHHHHHcC-----CHHHHHHHHh-CCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         223 PSYIERSDILLDLY--VNTPDKALNE-TPLHFAAKFG-----SVECVKRLIG-CAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       223 ~~~~~~v~~Ll~~~--~n~~d~~~g~-TpLH~Aa~~g-----~~~vv~~LL~-~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      ....+++++|++.|  +|..|. .|+ ||||+|+..|     +.+++++|++ +| ++++.+|..|+||||+|+..++.+
T Consensus        91 ~~~~~iv~~Ll~~Gadin~~d~-~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~A~~~~~~~  168 (186)
T 3t8k_A           91 TGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFVKRCQKPI  168 (186)
T ss_dssp             HHHHHHHHHHHHTTCCSSSCBG-GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHHHHTTTCHH
T ss_pred             hhHHHHHHHHHHCCCCCCccCC-CcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHHHHHcCCHH
Confidence            00134455555555  444566 898 9999999954     4679999999 88 999999999999999999998876


Q ss_pred             H
Q psy4222         294 N  294 (367)
Q Consensus       294 ~  294 (367)
                      .
T Consensus       169 ~  169 (186)
T 3t8k_A          169 A  169 (186)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.83  E-value=7.3e-21  Score=177.64  Aligned_cols=142  Identities=13%  Similarity=0.029  Sum_probs=121.6

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~  213 (367)
                      .+..+.|+||+|+..|+.+.|        ++|++.|+++. ..  +|+||||+|+..|+.+++++|++.|++.+     .
T Consensus        27 ~d~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~~~-~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g   95 (285)
T 3kea_A           27 ADVHGHSASYYAIADNNVRLV--------CTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG   95 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHH--------HHHHHTTGGGS-CC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCCCCCHHHHHHHcCCHHHH--------HHHHhCCCCCC-CC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            445667999999999999999        99999998874 33  48999999999999999999999998643     4


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCC-CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCC
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALN-ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLD  290 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g-~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g  290 (367)
                      ..+++.++..++.+++++|++.|+++.  +. .| .||||+|+..|+.+++++|+++| ++..-. ..|+||||+|+..|
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-~~g~t~L~~A~~~g  172 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFDL-AILLSCIHITIKNG  172 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS-SGGGSHHHHHHHTTCHHHHHHHHTTS-CTTCCC-STHHHHHHHHHHTT
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHhCC-Cccccc-cCCccHHHHHHHcC
Confidence            566777788899999999999987665  55 67 79999999999999999999999 665222 28999999999999


Q ss_pred             cHHH
Q psy4222         291 LLEN  294 (367)
Q Consensus       291 ~~~~  294 (367)
                      +.+.
T Consensus       173 ~~~~  176 (285)
T 3kea_A          173 HVDM  176 (285)
T ss_dssp             CHHH
T ss_pred             hHHH
Confidence            8874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=1.2e-19  Score=169.16  Aligned_cols=119  Identities=20%  Similarity=0.290  Sum_probs=104.7

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc-----ccCCCCCCcHHHHHHHc---CCHHHHHHHHhhcCCC
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT-----ILHEGCRYNALHVSTKA---VNPAMTEMLLEIIGNP  211 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~-----~~~d~~G~TpLh~Aa~~---g~~~iv~~LL~~~~d~  211 (367)
                      ....+++|+.|+..|+++.+        ..++..|.+..     ...+..|+||||+|+..   |+.+++++|++.|++ 
T Consensus       127 ~~~~l~~l~~a~~~~d~~~~--------~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-  197 (278)
T 1dcq_A          127 TAAKLHSLCEAVKTRDIFGL--------LQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-  197 (278)
T ss_dssp             HHHHHHHHHHHHHTTCHHHH--------HHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-
T ss_pred             cchhhhhhhhHhhhcccHHH--------HHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-
Confidence            34567899999999999999        66777776642     23377899999999999   899999999999876 


Q ss_pred             CCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCc
Q psy4222         212 AFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDL  291 (367)
Q Consensus       212 ~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~  291 (367)
                                               +|..|. .|+||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+
T Consensus       198 -------------------------in~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~  250 (278)
T 1dcq_A          198 -------------------------LDKQTG-KGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKH  250 (278)
T ss_dssp             -------------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             -------------------------ccccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCC
Confidence                                     666777 8999999999999999999999999 9999999999999999999998


Q ss_pred             HHH
Q psy4222         292 LEN  294 (367)
Q Consensus       292 ~~~  294 (367)
                      .+.
T Consensus       251 ~~~  253 (278)
T 1dcq_A          251 EHC  253 (278)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.82  E-value=1.6e-20  Score=161.25  Aligned_cols=132  Identities=17%  Similarity=0.136  Sum_probs=111.9

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFT  214 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~  214 (367)
                      +..+.|+||.|+..|+.++|        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++.     ...
T Consensus        33 ~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  103 (172)
T 3v30_A           33 DERGFTPLIWASAFGEIETV--------RFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG  103 (172)
T ss_dssp             CTTSCCHHHHHHHTTCHHHH--------HHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            45567899999999999999        9999999888 678889999999999999999999999998864     345


Q ss_pred             ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChH
Q psy4222         215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP  282 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TP  282 (367)
                      .+++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|++++ +++..+|..|.||
T Consensus       104 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~~p  171 (172)
T 3v30_A          104 TPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENHI-LKLFQSNLVPADP  171 (172)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH-HHHSCC-------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHhCcHHHHHHHHHHH-HHHhcccCCCCCC
Confidence            66777788899999999999987765  55 8999999999999999999999999 8999999999988

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.81  E-value=6.1e-20  Score=170.69  Aligned_cols=169  Identities=20%  Similarity=0.155  Sum_probs=127.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC-C-----CCCcccccc
Q psy4222         146 KLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-N-----PAFTNLLYD  219 (367)
Q Consensus       146 ~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~-d-----~~~~~~~~~  219 (367)
                      ++|.|+..|+++.++.++.....+++       +.+|..|+||||+|+..|+.+++++||+.++ +     .....+++.
T Consensus        79 ~l~~a~~~~~~~~~~~l~~~~~~~~~-------n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  151 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMSARLLDYVV-------NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML  151 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHCHHHHHHHH-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcC-------cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHH
Confidence            46788999999999666633222222       4568889999999999999999999999997 3     233344444


Q ss_pred             cC-----CCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222         220 SD-----TPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL  292 (367)
Q Consensus       220 ~~-----~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~  292 (367)
                      ++     ..+..+++++|++.|....  +. .|+||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+.
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~~  229 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGNINAKASQ-AGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCACEHGHK  229 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCH
Confidence            43     5688999999999985544  44 7999999999999999999999999 99999999999999999999987


Q ss_pred             HHHHhhhchHHHHhccCCCCCCCCCCCCccccchHHHhccC
Q psy4222         293 ENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVN  333 (367)
Q Consensus       293 ~~ll~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~l~~~~~~  333 (367)
                      +.+-     .++.     ..+..++....+..+|++..+..
T Consensus       230 ~iv~-----~Ll~-----~~gad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          230 EIAG-----LLLA-----VPSCDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             HHHH-----HHHT-----STTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHH-----HHHh-----cCCCCCcCcCCCCCCHHHHHHHc
Confidence            7431     1121     11222333445566777766543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.81  E-value=1.4e-19  Score=170.88  Aligned_cols=123  Identities=20%  Similarity=0.243  Sum_probs=107.1

Q ss_pred             CCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHhh
Q psy4222         136 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTIL-----HEGCRYNALHVSTKA---VNPAMTEMLLEI  207 (367)
Q Consensus       136 f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~-----~d~~G~TpLh~Aa~~---g~~~iv~~LL~~  207 (367)
                      |..+...+.++|+.|+..|+++.|        ++|+..|.++...     .+..|+||||+|+..   |+.+++++||+.
T Consensus       144 f~~~~~~~~~~L~~A~~~g~~~~v--------~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~  215 (301)
T 2b0o_E          144 FARRCTPEPQRLWTAICNRDLLSV--------LEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN  215 (301)
T ss_dssp             TSCCCC-CHHHHHHHHHTTCHHHH--------HHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH
T ss_pred             hhcccCchHHHHhhhhhccCHHHH--------HHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc
Confidence            444445567899999999999999        7777888877432     588899999999997   899999999999


Q ss_pred             cCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHh
Q psy4222         208 IGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS  287 (367)
Q Consensus       208 ~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~  287 (367)
                      |++                          ++..|. .|+||||+|+..|+.++|++||++| ++++.+|..|+||||+|+
T Consensus       216 gad--------------------------vn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~  267 (301)
T 2b0o_E          216 GGH--------------------------LDAKAA-DGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIAR  267 (301)
T ss_dssp             SSC--------------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHH
T ss_pred             CCC--------------------------CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH
Confidence            876                          566676 8999999999999999999999999 999999999999999999


Q ss_pred             cCCcHHH
Q psy4222         288 GLDLLEN  294 (367)
Q Consensus       288 ~~g~~~~  294 (367)
                      ..++.+.
T Consensus       268 ~~~~~~i  274 (301)
T 2b0o_E          268 KKHHKEC  274 (301)
T ss_dssp             HHTCHHH
T ss_pred             HcCCHHH
Confidence            9988764

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.81  E-value=1.7e-19  Score=181.61  Aligned_cols=122  Identities=20%  Similarity=0.241  Sum_probs=104.4

Q ss_pred             CCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccC------CCCCCcHHHHHHH---cCCHHHHHHHHh
Q psy4222         136 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILH------EGCRYNALHVSTK---AVNPAMTEMLLE  206 (367)
Q Consensus       136 f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~------d~~G~TpLh~Aa~---~g~~~iv~~LL~  206 (367)
                      |..+...+.+.||.|+..|+++.|        +.|+..|+++ +..      +..|+||||+||.   .|+.+++++||+
T Consensus       125 f~~~~~~~~~~L~~A~~~g~~~~v--------~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~  195 (497)
T 3lvq_E          125 FARRCTPEPQRLWTAICNRDLLSV--------LEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ  195 (497)
T ss_dssp             TSCCCC-CHHHHHHHHHHTCHHHH--------HHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHhccCHHHH--------HHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH
Confidence            444334445789999999999999        8888888887 334      7789999999976   899999999999


Q ss_pred             hcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH
Q psy4222         207 IIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS  286 (367)
Q Consensus       207 ~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA  286 (367)
                      .|++                          +|..|. .|+||||+||..|+.++|++||++| |+++.+|.+|+||||+|
T Consensus       196 ~ga~--------------------------vn~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A  247 (497)
T 3lvq_E          196 NGGH--------------------------LDAKAA-DGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIA  247 (497)
T ss_dssp             HSCC--------------------------TTCCCS-SSCCHHHHHTTTTCHHHHHHHHHTC-CCCSCCCTTCCCHHHHH
T ss_pred             cCCC--------------------------CCccCC-CCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHH
Confidence            9977                          666677 8999999999999999999999999 99999999999999999


Q ss_pred             hcCCcHHH
Q psy4222         287 SGLDLLEN  294 (367)
Q Consensus       287 ~~~g~~~~  294 (367)
                      +..|+.+.
T Consensus       248 ~~~~~~~~  255 (497)
T 3lvq_E          248 RKKHHKEC  255 (497)
T ss_dssp             HHTTCHHH
T ss_pred             HHcCCHHH
Confidence            99888774

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=4e-19  Score=172.27  Aligned_cols=114  Identities=20%  Similarity=0.158  Sum_probs=105.0

Q ss_pred             HHHHHHHHHc-CCHHHHHHHHhcCChhHHhcCCCccccCC--CCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222         144 LVKLRKLIEK-GNLADVRKLVWDNPRYLVSSGDFPTILHE--GCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS  220 (367)
Q Consensus       144 lt~L~~A~~~-G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d--~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~  220 (367)
                      -++||.|+.. |+++.|        ++|+..|+++ +..+  ..|+||||+|+..|+.+++++||+.+++          
T Consensus       200 ~t~L~~Aa~~~g~~~~v--------~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad----------  260 (368)
T 3jue_A          200 GALLFRASGHPPSLPTM--------ADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN----------  260 (368)
T ss_dssp             HHHHHHHTSSSCCHHHH--------HHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred             CcHHHHHHHccCCHHHH--------HHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC----------
Confidence            4799999999 999999        8888999888 4566  7899999999999999999999999876          


Q ss_pred             CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                                      +|..|. .|+||||+|+..|+.++|++||++| ++++.+|.+|.||||+|+..++.+.
T Consensus       261 ----------------vn~~d~-~G~TpLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~i  316 (368)
T 3jue_A          261 ----------------VNQADS-AGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADI  316 (368)
T ss_dssp             ----------------TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ----------------CCCCCC-CCCCHHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHH
Confidence                            666677 8999999999999999999999999 9999999999999999999998774

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=3.1e-19  Score=137.91  Aligned_cols=88  Identities=30%  Similarity=0.404  Sum_probs=46.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCC
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  224 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~  224 (367)
                      |+||.|+..|+.+.+        ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.+++              
T Consensus         4 t~L~~A~~~~~~~~v--------~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~--------------   60 (93)
T 1n0q_A            4 TPLHLAARNGHLEVV--------KLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--------------   60 (93)
T ss_dssp             CHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------------
T ss_pred             cHHHHHHHcCCHHHH--------HHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------
Confidence            455555555555555        5555555544 34455555555555555555555555555443              


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         225 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       225 ~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                                  ++..|. .|+||||+|+..|+.+++++|+++|
T Consensus        61 ------------~~~~d~-~g~t~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           61 ------------VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             ------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ------------CCccCC-CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                        333334 4555555555555555555555555

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.79  E-value=8.7e-20  Score=165.77  Aligned_cols=117  Identities=16%  Similarity=0.124  Sum_probs=76.8

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  219 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~  219 (367)
                      ...+.|+||.|+..|+.+.+        +.|++.|+++. . +..|.||||+|+..|+.+++++||+.+++         
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~--------~~ll~~g~~~~-~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---------   62 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTG--------SERIAHGMRVK-F-NPLPLALLLDSSLEGEFDLVQRIIYEVDD---------   62 (239)
T ss_dssp             ---------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS---------
T ss_pred             CccccccCchhhhhhhHHHH--------HHHhccCCCcc-c-CchhhHHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            34567999999999999999        88999998873 3 46689999999999999999999998876         


Q ss_pred             cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                                       ++..+. .|+||||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus        63 -----------------~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~  118 (239)
T 1ycs_B           63 -----------------PSLPND-EGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQV  118 (239)
T ss_dssp             -----------------CCCCCT-TSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             -----------------CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHH
Confidence                             566677 8999999999999999999999999 9999999999999999999998774

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.1e-19  Score=145.81  Aligned_cols=107  Identities=23%  Similarity=0.233  Sum_probs=92.0

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  219 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~  219 (367)
                      +..+.|+||.|+..|+.+.+        ++|++.|.++ +.+|..|+||||+|+..|+.+++++|++.+++         
T Consensus         6 d~~g~t~L~~A~~~~~~~~~--------~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------   67 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEV--------KKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---------   67 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHH--------HHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---------
T ss_pred             CCCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---------
Confidence            34566899999999999999        8888888887 57788899999999999999999999998766         


Q ss_pred             cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHH
Q psy4222         220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL  283 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL  283 (367)
                                       ++..+. .|+||||+|+..|+.+++++|+++| ++++.++..|.||-
T Consensus        68 -----------------~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           68 -----------------VNARSK-DGNTPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             -----------------TTCCCT-TCCCTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             -----------------CcccCC-CCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence                             555566 8999999999999999999999999 99999999999884

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=6.6e-19  Score=136.07  Aligned_cols=83  Identities=33%  Similarity=0.477  Sum_probs=75.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy4222         184 CRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKR  263 (367)
Q Consensus       184 ~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~  263 (367)
                      +|+||||+|+..|+.+++++|++.+++                          ++..+. .|+||||+|+..|+.+++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------------------~n~~d~-~g~t~L~~A~~~~~~~~v~~   53 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD--------------------------VNAKDK-NGRTPLHLAARNGHLEVVKL   53 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC--------------------------TTCCCT-TSCCHHHHHHHTTCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC--------------------------CcccCC-CCCCHHHHHHHcCCHHHHHH
Confidence            478999999999999999999998876                          566677 89999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         264 LIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       264 LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      |+++| ++++.+|..|+||||+|+..|+.+.
T Consensus        54 Ll~~g-a~~~~~d~~g~t~l~~A~~~~~~~~   83 (93)
T 1n0q_A           54 LLEAG-ADVNAKDKNGRTPLHLAARNGHLEV   83 (93)
T ss_dssp             HHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHcC-CCCCccCCCCCCHHHHHHHcCCHHH
Confidence            99999 9999999999999999999998774

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.77  E-value=6.5e-19  Score=149.25  Aligned_cols=120  Identities=17%  Similarity=0.144  Sum_probs=104.2

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFT  214 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~  214 (367)
                      +..+.|+||.|+. |+.+.+        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.     ...
T Consensus        35 ~~~g~t~L~~A~~-~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  104 (162)
T 1ihb_A           35 NGFGRTALQVMKL-GNPEIA--------RRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN  104 (162)
T ss_dssp             CTTSCCHHHHCCS-SCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CccCccHHHHHHc-CcHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            3455689999999 999999        9999999888 578899999999999999999999999998753     345


Q ss_pred             ccccccCCCChHHHHHHHHhcCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy4222         215 NLLYDSDTPSYIERSDILLDLYVN---TPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ  271 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~~~n---~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad  271 (367)
                      .+++.++..++.+++++|++.|.+   ..+. .|+||||+|+..|+.+++++|+++| ||
T Consensus       105 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~G-Ad  162 (162)
T 1ihb_A          105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQANG-AG  162 (162)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTC---
T ss_pred             CHHHHHHHcCCHHHHHHHHHccCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHHhC-CC
Confidence            667777888999999999999865   4466 8999999999999999999999999 65

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.77  E-value=4.4e-19  Score=155.71  Aligned_cols=146  Identities=13%  Similarity=-0.001  Sum_probs=106.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCH----HHHHHHHhhcCCCCCcccccc
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNP----AMTEMLLEIIGNPAFTNLLYD  219 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~----~iv~~LL~~~~d~~~~~~~~~  219 (367)
                      .++|+.||+.|+++.+        +.++..+.+.  ..+..|+||||+|+..|+.    +++++||+.|++         
T Consensus         7 ~~~l~~Aa~~g~~~~~--------~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad---------   67 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDF--------LELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD---------   67 (186)
T ss_dssp             CSSHHHHHHHSCHHHH--------HHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC---------
T ss_pred             ccHHHHHHHcCCHHHH--------HHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC---------
Confidence            3579999999999999        4444544332  2236699999999999985    489999998877         


Q ss_pred             cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCC------HHHHHHHHhCCCCCCCCCCCCCC-hHHHHHhcCCcH
Q psy4222         220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGS------VECVKRLIGCAKIQTSVRNKEGK-TPLDSSSGLDLL  292 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~------~~vv~~LL~~g~ad~~~~n~~G~-TPL~iA~~~g~~  292 (367)
                                       +|..+. .|+||||+|+..|+      .++|++|+++| ++++.+|..|+ ||||+|+..+..
T Consensus        68 -----------------vn~~d~-~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~  128 (186)
T 3t8k_A           68 -----------------IKSRTK-EGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVD  128 (186)
T ss_dssp             -----------------SSCCCT-TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSC
T ss_pred             -----------------CCCCCC-CCCcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCC
Confidence                             666777 99999999999997      68899999999 99999999999 999999986543


Q ss_pred             HHHHhhhchHHHHhccCCCCCCCCCCCCccccchHHHhcc
Q psy4222         293 ENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCV  332 (367)
Q Consensus       293 ~~ll~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~l~~~~~  332 (367)
                      +.-....+..++.     ..|..++.......+|++..+.
T Consensus       129 ~~~~~~iv~~Ll~-----~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A          129 ENEMIPLYKLIFS-----QSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HHHHHHHHHHHHT-----STTCCTTCCCTTSCCHHHHHHT
T ss_pred             hhhHHHHHHHHHH-----hcCCCCcccCCCCCCHHHHHHH
Confidence            2111111112222     0223334445566677776654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.77  E-value=6.9e-19  Score=152.21  Aligned_cols=130  Identities=13%  Similarity=-0.028  Sum_probs=114.8

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~  213 (367)
                      .+..+.|+||.|+..|+.+.+        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++.+     .
T Consensus        35 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g  105 (179)
T 3f6q_A           35 GDDHGFSPLHWACREGRSAVV--------EMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG  105 (179)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCCCCCHHHHHHHcCcHHHH--------HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            445567899999999999999        9999999988 6788999999999999999999999999998643     4


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEG  279 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G  279 (367)
                      ..+++.++..++.+++++|++.|+++.  +. .|.||||+|+..++.+++++|+++| ++++..+..+
T Consensus       106 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~~~~L~~~g-~~~~~~~~~~  171 (179)
T 3f6q_A          106 NVPLHYACFWGQDQVAEDLVANGALVSICNK-YGEMPVDKAKAPLRELLRERAEKMG-QNLNRIPYKD  171 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSSBCCT-TSCCGGGGSCHHHHHHHHHHHHHTT-CCCSCBCCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCcchhcc-CCCCcHHHHHHHHHHHHHHHHHHhh-cCcccCCccc
Confidence            566777778899999999999997765  56 8999999999999999999999999 8998877655

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.77  E-value=1.4e-18  Score=151.89  Aligned_cols=114  Identities=22%  Similarity=0.151  Sum_probs=101.9

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHH
Q psy4222         179 ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHF  251 (367)
Q Consensus       179 ~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~  251 (367)
                      +.+|..|+||||+|+..|+.+++++|++.+++.     ....+++.++..++.+++++|++.|+++.  +. .|+||||+
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~  107 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-SGKTPLMW  107 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TSCCHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHH
Confidence            345788999999999999999999999998763     34567777888899999999999986665  55 89999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         252 AAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       252 Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      |+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+.
T Consensus       108 A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~  149 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEI  149 (192)
T ss_dssp             HHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999 9999999999999999999998764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.77  E-value=2.2e-19  Score=171.00  Aligned_cols=141  Identities=16%  Similarity=0.063  Sum_probs=110.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCcccccc
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTNLLYD  219 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~~~~~  219 (367)
                      ..+|.|+..+..+.+        ++|+..|.++...+|..|+||||+||..|+.++|++||+.|++.     ....+++.
T Consensus        99 ~~~~~a~~~~~~~~~--------~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~  170 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVN--------DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK  170 (327)
T ss_dssp             -----CHHHHHHHHH--------HHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHH
T ss_pred             chhHHHHHhhHHHHH--------HHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            456778877777777        88999999984337999999999999999999999999999874     34556677


Q ss_pred             cCCCCh---HHHHHHHHhcC---CCCCCCCCCCcHHHHHHH----cCCHHHHHHHHhCCC-------------------C
Q psy4222         220 SDTPSY---IERSDILLDLY---VNTPDKALNETPLHFAAK----FGSVECVKRLIGCAK-------------------I  270 (367)
Q Consensus       220 ~~~~~~---~~~v~~Ll~~~---~n~~d~~~g~TpLH~Aa~----~g~~~vv~~LL~~g~-------------------a  270 (367)
                      ++..++   .++++.|++.+   ++..+. .|+||||+|+.    .|+.+++++|++.+.                   +
T Consensus       171 A~~~g~~~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~  249 (327)
T 1sw6_A          171 AVKSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES  249 (327)
T ss_dssp             HHHSSHHHHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------
T ss_pred             HHHhcccccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccC
Confidence            776666   55666666654   556677 99999999999    899999999998740                   2


Q ss_pred             -------------------------CCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         271 -------------------------QTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       271 -------------------------d~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                                               +++.+|..|+||||+|+..|+.+.
T Consensus       250 ~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~  298 (327)
T 1sw6_A          250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI  298 (327)
T ss_dssp             ----------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             CcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHH
Confidence                                     578888889999999998888764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.77  E-value=2.3e-18  Score=147.63  Aligned_cols=118  Identities=16%  Similarity=0.105  Sum_probs=104.1

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCcc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFTN  215 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~~  215 (367)
                      ..+.|+||.|+..|+.+.+        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.     ....
T Consensus        45 ~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  115 (169)
T 2y1l_E           45 ASGWTPLHLAAFNGHLEIV--------EVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHT  115 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            4556899999999999999        8999999888 577889999999999999999999999998764     3456


Q ss_pred             cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                      +++.++..++.+++++|++.|+++.  +. .|.||||+|+..|+.+++++|+++|
T Consensus       116 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          116 PLHLAAMFGHLEIVEVLLKNGADVNAQDK-FGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            6777778899999999999997765  55 8999999999999999999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.76  E-value=5.3e-19  Score=149.74  Aligned_cols=108  Identities=14%  Similarity=0.142  Sum_probs=82.2

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCc-HHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYN-ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  219 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~T-pLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~  219 (367)
                      ..+.|+||.|+ .|+.+++        ++|++.|+++ +.++..|+| |||+|+..|+.+++++|++.|++         
T Consensus        43 ~~g~t~L~~A~-~~~~~~v--------~~Ll~~g~~~-~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~---------  103 (156)
T 1bi7_B           43 SYGRRPIQVMM-MGSARVA--------ELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR---------  103 (156)
T ss_dssp             SSSCCTTTSSC-TTCHHHH--------HHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC---------
T ss_pred             CCCCCHHHHHH-cCCHHHH--------HHHHHcCCCC-CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCC---------
Confidence            44568899985 9999999        9999999988 688899999 99999999999999999999876         


Q ss_pred             cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH
Q psy4222         220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS  286 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA  286 (367)
                                       ++..+. .|+||||+|+..|+.++|++|+++| ++++.+|..|.||.+-+
T Consensus       104 -----------------~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          104 -----------------LDVRDA-WGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             -----------------SSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             -----------------CcccCC-CCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence                             556667 8999999999999999999999999 99999999999998743

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.75  E-value=2.6e-18  Score=146.29  Aligned_cols=119  Identities=17%  Similarity=0.162  Sum_probs=104.0

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~  213 (367)
                      .+..+.|+||.|+..|+.+.+        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.+     .
T Consensus        38 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  108 (165)
T 3twr_A           38 IEGRQSTPLHFAAGYNRVSVV--------EYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK  108 (165)
T ss_dssp             TTTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             cccCCCCHHHHHHHcChHHHH--------HHHHhcCCCC-CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCC
Confidence            444556899999999999999        9999999888 6788899999999999999999999999988644     4


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                      ..+++.+...++.+++++|+++|+++.  +. .|+||||+|+. |+.+++++|+++|
T Consensus       109 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          109 FTPLHEAAAKGKYEICKLLLQHGADPTKKNR-DGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCChhHhHhc-CChHHHHHHhhcc
Confidence            456777788899999999999987665  55 89999999877 9999999999998

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.74  E-value=7.1e-18  Score=139.36  Aligned_cols=91  Identities=21%  Similarity=0.243  Sum_probs=81.1

Q ss_pred             CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHH
Q psy4222         174 GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAA  253 (367)
Q Consensus       174 g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa  253 (367)
                      |.++  .+|..|+||||+|+..|+.+++++|++.+++                          ++..+. .|+||||+||
T Consensus         1 G~d~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------------------------~~~~~~-~g~t~L~~A~   51 (137)
T 3c5r_A            1 GIDP--FTNHRGETLLHIASIKGDIPSVEYLLQNGSD--------------------------PNVKDH-AGWTPLHEAC   51 (137)
T ss_dssp             ---C--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--------------------------SCCCCT-TSCCHHHHHH
T ss_pred             CCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------------CCcCCC-CCCCHHHHHH
Confidence            4455  6788999999999999999999999998866                          555666 8999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         254 KFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       254 ~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ..|+.+++++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus        52 ~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~   91 (137)
T 3c5r_A           52 NHGHLKVVELLLQHK-ALVNTTGYQNDSPLHDAAKNGHVDI   91 (137)
T ss_dssp             HTTCHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHcC-CcccCcCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999 9999999999999999999998874

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.73  E-value=8.1e-18  Score=143.47  Aligned_cols=120  Identities=16%  Similarity=0.143  Sum_probs=106.3

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----C
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----F  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~  213 (367)
                      .+..+.|+||.|+..|+.+.+        ++|++.|.++ +..+..|.||||+|+..|+.+++++|++.+++.+     .
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  102 (167)
T 3v31_A           32 TDEEGFTPLMWAAAHGQIAVV--------EFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG  102 (167)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTS
T ss_pred             CCCCCCCHHHHHHHCCCHHHH--------HHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCC
Confidence            345567899999999999999        9999999888 5778999999999999999999999999987643     4


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                      ..+++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|++++
T Consensus       103 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A          103 GTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            566777778899999999999987765  55 8999999999999999999999987

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.73  E-value=1.2e-17  Score=140.56  Aligned_cols=114  Identities=14%  Similarity=0.124  Sum_probs=100.8

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTN  215 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~  215 (367)
                      ..+.|+||.|+..|+.+.+        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++.+     ...
T Consensus        32 ~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  102 (153)
T 1awc_B           32 WLGTSPLHLAAQYGHFSTT--------EVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT  102 (153)
T ss_dssp             TTCCCHHHHHHHHTCHHHH--------HHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred             CCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCC
Confidence            3456899999999999999        8999999888 6788899999999999999999999999988643     455


Q ss_pred             cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHH
Q psy4222         216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRL  264 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~L  264 (367)
                      +++.++..++.+++++|++.|+++.  +. .|+||||+|+..|+.+++++|
T Consensus       103 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          103 ALHWATEHNHQEVVELLIKYGADVHTQSK-FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHh
Confidence            6777778899999999999987665  55 899999999999999999987

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.73  E-value=2.5e-19  Score=162.21  Aligned_cols=142  Identities=11%  Similarity=-0.017  Sum_probs=113.3

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC------C
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP------A  212 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~------~  212 (367)
                      .+..+.|+||+|+..|+.++|        ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.|++.      .
T Consensus        50 ~d~~g~tpLh~A~~~g~~~~v--------~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  120 (229)
T 2vge_A           50 PNEEGITALHNAICGANYSIV--------DFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD  120 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSST
T ss_pred             CCCCCCCHHHHHHHcCCHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCC
Confidence            345567999999999999999        9999999998 688899999999999999999999999998763      3


Q ss_pred             Cccccccc--CCCChHHHHHHHHhcCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC--CCCCCCCCChHHHHH
Q psy4222         213 FTNLLYDS--DTPSYIERSDILLDLYVNT--PDKALNETPLHFAAKFGSVECVKRLIGCAKIQ--TSVRNKEGKTPLDSS  286 (367)
Q Consensus       213 ~~~~~~~~--~~~~~~~~v~~Ll~~~~n~--~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad--~~~~n~~G~TPL~iA  286 (367)
                      ...+++.+  ...++.+++++|++.|+++  .+. .|.||||.++..+   .+++|++.| ++  ++.+|..|+||||+|
T Consensus       121 g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~-~~~~~l~~~~~~~---~~~~ll~~g-a~~~~~~~d~~G~TpL~~A  195 (229)
T 2vge_A          121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNS-GAVYALWDYSAEF---GDELSFREG-ESVTVLRRDGPEETDWWWA  195 (229)
T ss_dssp             TCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGG-GEEEESSCBCCSS---TTBCCBCTT-CEEEEEESSCTTCSSEEEE
T ss_pred             CCCHHHHHHHHhcChHHHHHHHHHcCCCcccccC-CchHHHHHHhhcc---ccccCcccc-ccccccccCCCcccHHHHH
Confidence            44555666  7778888888888877444  355 6778888655444   336777887 67  677888899999999


Q ss_pred             hcCCcHHH
Q psy4222         287 SGLDLLEN  294 (367)
Q Consensus       287 ~~~g~~~~  294 (367)
                      +..|+.+.
T Consensus       196 ~~~g~~~~  203 (229)
T 2vge_A          196 ALHGQEGY  203 (229)
T ss_dssp             EETTEEEE
T ss_pred             HHcCCcce
Confidence            98887653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.73  E-value=1.1e-17  Score=140.90  Aligned_cols=117  Identities=17%  Similarity=0.099  Sum_probs=100.8

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CC
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AF  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~  213 (367)
                      .+..+.|+||. +..|+.+.+        ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.|++.     ..
T Consensus        32 ~~~~g~t~L~~-~~~~~~~~v--------~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  101 (156)
T 1bd8_A           32 LNRFGKTALQV-MMFGSTAIA--------LELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG  101 (156)
T ss_dssp             CCTTSCCHHHH-SCTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             cCCCCCcHHHH-HHcCCHHHH--------HHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCC
Confidence            44556789999 999999999        8888999888 678889999999999999999999999998764     34


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGC  267 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~  267 (367)
                      ..+++.++..++.+++++|++. ++..  +. .|+||||+|+..|+.+++++|+++
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          102 ALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA-RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT-TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcHHHHHHHhChHHHHHHHHhc-cCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHhh
Confidence            5667777788899999999987 5554  66 899999999999999999999975

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.72  E-value=2.8e-18  Score=161.83  Aligned_cols=110  Identities=21%  Similarity=0.193  Sum_probs=92.6

Q ss_pred             ChhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccc
Q psy4222         140 KSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  216 (367)
Q Consensus       140 ~~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~  216 (367)
                      +..+.|+||.|+..   |+++++        ++|++.|+++ +.+|..|+||||+|+..|+.+++++||+.|++      
T Consensus       187 ~~~g~t~Lh~A~~~~~~~~~~iv--------~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad------  251 (301)
T 2b0o_E          187 QAPEELVLHLAVKVANQASLPLV--------DFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLKGRAL------  251 (301)
T ss_dssp             CSCEECHHHHHHHTCCTTTHHHH--------HHHHHHSSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred             CCCCccHHHHHHHhcccCcHHHH--------HHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------
Confidence            45677999999997   899999        9999999988 67899999999999999999999999999877      


Q ss_pred             ccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222         217 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL  292 (367)
Q Consensus       217 ~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~  292 (367)
                                          ++..|. .|+||||+|+..|+.+++++|+++| ++      .|.||||+|+..|+-
T Consensus       252 --------------------~~~~d~-~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          252 --------------------VGTVNE-AGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             --------------------CSCCCT-TSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC--------
T ss_pred             --------------------CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHHHhcCCc
Confidence                                556677 8999999999999999999999999 65      589999999988763

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.71  E-value=2.9e-19  Score=173.82  Aligned_cols=133  Identities=11%  Similarity=-0.008  Sum_probs=110.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc--ccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-------CCc
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT--ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-------AFT  214 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~--~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-------~~~  214 (367)
                      .|+||.|++.|+.+.|        ++|++.|+...  ...+..|.||||+||..|+.++|++|++.+++.       ...
T Consensus        93 ~T~Lh~Aa~~G~~e~v--------~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~  164 (376)
T 2aja_A           93 EVICFVAAITGCSSAL--------DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY  164 (376)
T ss_dssp             HHHHHHHHHHCCHHHH--------HHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHH
T ss_pred             CCHHHHHHHcCCHHHH--------HHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCC
Confidence            4999999999999999        88888886221  122456889999999999999999999999641       115


Q ss_pred             ccccccCCCChHHHHHHHHhcCCCC----CCCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcC
Q psy4222         215 NLLYDSDTPSYIERSDILLDLYVNT----PDKALNETPLHFAA-KFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGL  289 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~~~n~----~d~~~g~TpLH~Aa-~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~  289 (367)
                      .+++.++..|+.+++++|++.|++.    .+. .|+||||+|| ..|+.++|++|+++| ++       |.||||+|+..
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a~-------~~taL~~Aa~~  235 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCP-VM-------LAYAEIHEFEY  235 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTTCCHHHHHHHTTSH-HH-------HHHHHHCTTTT
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHCCCHHHHHHHHhCC-Cc-------cchHHHHHHHC
Confidence            5778888899999999999999874    344 6899999999 999999999999987 42       89999999999


Q ss_pred             CcHH
Q psy4222         290 DLLE  293 (367)
Q Consensus       290 g~~~  293 (367)
                      |+.+
T Consensus       236 g~~e  239 (376)
T 2aja_A          236 GEKY  239 (376)
T ss_dssp             TTTT
T ss_pred             CCHH
Confidence            8876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=2.6e-17  Score=131.33  Aligned_cols=86  Identities=27%  Similarity=0.261  Sum_probs=78.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy4222         181 HEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVEC  260 (367)
Q Consensus       181 ~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~v  260 (367)
                      .+.+|.|+||+|+..|+.+++++|++.+++                          ++..|. .|+||||+||..|+.++
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------------------------i~~~d~-~g~tpLh~A~~~~~~~~   72 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGAD--------------------------VAAKDK-NGSTPLHLAARNGHLEV   72 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCC--------------------------TTCCCT-TCCCHHHHHHHTTCHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCC--------------------------CCccCC-CCCCHHHHHHHcCCHHH
Confidence            377899999999999999999999998866                          566666 89999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         261 VKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       261 v~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      |++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus        73 v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~  105 (110)
T 2zgd_A           73 VKLLLEAG-ADVXAQDKFGKTAFDISIDNGNEDL  105 (110)
T ss_dssp             HHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcC-CCccccccCCCcHHHHHHHcCCHHH
Confidence            99999999 9999999999999999999988764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.70  E-value=3.9e-17  Score=130.73  Aligned_cols=87  Identities=30%  Similarity=0.300  Sum_probs=80.1

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHH
Q psy4222         180 LHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVE  259 (367)
Q Consensus       180 ~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~  259 (367)
                      ++|..|+||||+|+..|+.+++++|++.+++                          ++..+. .|+||||+|+..|+.+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--------------------------~~~~d~-~g~t~L~~A~~~~~~~   56 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD--------------------------VNARSK-DGNTPLHLAAKNGHAE   56 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC--------------------------SSCCCS-SSCCTTHHHHTTTCHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------------CCCcCC-CCCCHHHHHHHcCcHH
Confidence            5688999999999999999999999998766                          556666 8999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         260 CVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       260 vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus        57 ~~~~Ll~~g-~~~~~~d~~g~tpl~~A~~~~~~~~   90 (115)
T 2l6b_A           57 IVKLLLAKG-ADVNARSKDGNTPEHLAKKNGHHEI   90 (115)
T ss_dssp             HHHHHTTTT-CCTTCCCTTCCCTTHHHHTTTCHHH
T ss_pred             HHHHHHHcC-CCCcccCCCCCCHHHHHHHCCCHHH
Confidence            999999999 9999999999999999999998764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.69  E-value=1.1e-16  Score=132.09  Aligned_cols=92  Identities=21%  Similarity=0.231  Sum_probs=82.5

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS  220 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~  220 (367)
                      ..+.|+||.|+..|+.+++        ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.+++          
T Consensus        45 ~~g~t~L~~A~~~~~~~~v--------~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------  105 (136)
T 2jab_A           45 EYGLTPLYLATAHGHLEIV--------EVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD----------  105 (136)
T ss_dssp             TTSCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----------
T ss_pred             CCCCCHHHHHHHcCCHHHH--------HHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence            4456899999999999999        9999999888 57888999999999999999999999998866          


Q ss_pred             CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                                      ++..+. .|+||||+|+..|+.+++++|+++|
T Consensus       106 ----------------~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          106 ----------------VNAQDK-FGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             ----------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             ----------------CcCcCC-CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                            555666 8999999999999999999999986

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.68  E-value=2.3e-17  Score=136.37  Aligned_cols=93  Identities=12%  Similarity=0.100  Sum_probs=84.1

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCC-CCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGC-RYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  219 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~-G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~  219 (367)
                      ..+.|+||.|+. |+.+++        ++|++.|+++ +.++.. |+||||+|+..|+.+++++|++.+++         
T Consensus        43 ~~g~t~L~~A~~-~~~~~v--------~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---------  103 (136)
T 1d9s_A           43 RFGRRPIQVMMM-GSAQVA--------ELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR---------  103 (136)
T ss_dssp             TTCCTTTTTSTT-SCHHHH--------HHHHHHTCCS-SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC---------
T ss_pred             CCCCCHHHHHHc-CCHHHH--------HHHHHCCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            455689999999 999999        9999999988 678888 99999999999999999999998876         


Q ss_pred             cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy4222         220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ  271 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad  271 (367)
                                       ++..+. .|+||||+|+..|+.+++++|+++| +|
T Consensus       104 -----------------~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~G-ad  136 (136)
T 1d9s_A          104 -----------------LDVCDA-WGRLPVDLAEEQGHRDIARYLHAAT-GD  136 (136)
T ss_dssp             -----------------CCCCSS-SSSCHHHHHHHHTCHHHHHHHHHHH-CC
T ss_pred             -----------------CCccCC-CCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence                             556667 8999999999999999999999998 65

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.67  E-value=1.7e-16  Score=128.70  Aligned_cols=85  Identities=19%  Similarity=0.117  Sum_probs=76.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy4222         182 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV  261 (367)
Q Consensus       182 d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv  261 (367)
                      +..|.||||+|+..|+.+++++|++.+.+                          ++..+. .|+||||+||..|+.++|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~--------------------------~~~~~~-~g~t~L~~A~~~~~~~~v   56 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED--------------------------VNRTLE-GGRKPLHYAADCGQLEIL   56 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC--------------------------TTSCCT-TSSCHHHHHHHTTCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC--------------------------cCccCC-CCCcHHHHHHHcCCHHHH
Confidence            45688999999999999999999998866                          555666 899999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         262 KRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       262 ~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++|+++| ++++.+|..|+||||+|+..++.+.
T Consensus        57 ~~Ll~~g-~~~~~~d~~g~tpL~~A~~~~~~~~   88 (123)
T 3aaa_C           57 EFLLLKG-ADINAPDKHHITPLLSAVYEGHVSC   88 (123)
T ss_dssp             HHHHTTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            9999999 9999999999999999999998764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=3.5e-16  Score=124.70  Aligned_cols=91  Identities=21%  Similarity=0.264  Sum_probs=80.4

Q ss_pred             CCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccc
Q psy4222         138 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL  217 (367)
Q Consensus       138 ~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~  217 (367)
                      ..+.++.|+||.|+..|+.+.+        ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.+++       
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v--------~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-------   82 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEV--------RILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-------   82 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------
T ss_pred             ccCCccchHHHHHHHcCCHHHH--------HHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------
Confidence            3556778999999999999999        8899999888 57789999999999999999999999998876       


Q ss_pred             cccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy4222         218 YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRL  264 (367)
Q Consensus       218 ~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~L  264 (367)
                                         ++..+. .|+||||+|+..|+.+++++|
T Consensus        83 -------------------~~~~d~-~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           83 -------------------VXAQDK-FGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             -------------------TTCCCT-TSCCHHHHHHHHTCHHHHHHH
T ss_pred             -------------------cccccc-CCCcHHHHHHHcCCHHHHHHh
Confidence                               556666 899999999999999999987

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.67  E-value=2.7e-16  Score=126.67  Aligned_cols=94  Identities=28%  Similarity=0.362  Sum_probs=84.4

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDS  220 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~  220 (367)
                      ..+.|+||.|+..|+.+.+        ++|++.|.++ +.++..|+||||+|+..|+.+++++|++.+++          
T Consensus        33 ~~g~t~L~~A~~~~~~~~~--------~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~----------   93 (126)
T 1n0r_A           33 KNGRTPLHLAARNGHLEVV--------KLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----------   93 (126)
T ss_dssp             TTSCCHHHHHHHHTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred             CCCCcHHHHHHHcCcHHHH--------HHHHHcCCCC-cccCCCCCcHHHHHHHcChHHHHHHHHHcCCC----------
Confidence            4456899999999999999        9999999888 57888999999999999999999999998866          


Q ss_pred             CCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy4222         221 DTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ  271 (367)
Q Consensus       221 ~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad  271 (367)
                                      ++..+. .|+||||+|+..|+.+++++|+++| ||
T Consensus        94 ----------------~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~G-ad  126 (126)
T 1n0r_A           94 ----------------VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG-AY  126 (126)
T ss_dssp             ----------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHT-CC
T ss_pred             ----------------CcccCC-CCCCHHHHHHHcCcHHHHHHHHHcC-CC
Confidence                            455566 8999999999999999999999999 65

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.64  E-value=7.4e-17  Score=140.22  Aligned_cols=84  Identities=24%  Similarity=0.282  Sum_probs=76.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy4222         182 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV  261 (367)
Q Consensus       182 d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv  261 (367)
                      +..|.||||+|+..|+.+++++||+ +++                          ++..+. .|+||||+||..|+.++|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--------------------------~~~~d~-~g~t~L~~A~~~~~~~~v   92 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD--------------------------VDAVDE-NGRTALLFVAGLGSDKCV   92 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC--------------------------TTCCCT-TSCCHHHHHHHHTCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC--------------------------CCCcCC-CCCCHHHHHHHcCCHHHH
Confidence            4568999999999999999999998 655                          566677 899999999999999999


Q ss_pred             HHHHhCCCCCCCCCC-CCCChHHHHHhcCCcHHH
Q psy4222         262 KRLIGCAKIQTSVRN-KEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       262 ~~LL~~g~ad~~~~n-~~G~TPL~iA~~~g~~~~  294 (367)
                      ++|+++| ++++.+| ..|+||||+|+..|+.+.
T Consensus        93 ~~Ll~~g-a~~~~~~~~~g~tpL~~A~~~~~~~~  125 (183)
T 3deo_A           93 RLLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEV  125 (183)
T ss_dssp             HHHHHTT-CCTTCCCSSSSCCHHHHHHHTTCHHH
T ss_pred             HHHHHcC-CCCCcCCCCCCCCHHHHHHhcCcHHH
Confidence            9999999 9999998 899999999999998874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.63  E-value=5.4e-16  Score=144.43  Aligned_cols=96  Identities=20%  Similarity=0.209  Sum_probs=87.2

Q ss_pred             CChhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcc
Q psy4222         139 LKSQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN  215 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~  215 (367)
                      .+..+.|+||.|+..   |+.+++        ++|++.|+++ +.+|..|+||||+|+..|+.+++++||+.|++     
T Consensus       165 ~~~~g~t~Lh~A~~~~~~~~~~~v--------~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-----  230 (278)
T 1dcq_A          165 GHEPDETALHLAVRSVDRTSLHIV--------DFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRGKAS-----  230 (278)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHH--------HHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred             cccCCCCcchHHHHhcccchHHHH--------HHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----
Confidence            345678999999999   899999        9999999998 68899999999999999999999999999877     


Q ss_pred             cccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy4222         216 LLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ  271 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad  271 (367)
                                           ++..|. .|+||||+|+..|+.++|++|+++| ++
T Consensus       231 ---------------------~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g-a~  263 (278)
T 1dcq_A          231 ---------------------IEIANE-SGETPLDIAKRLKHEHCEELLTQAL-SG  263 (278)
T ss_dssp             ---------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHH-TT
T ss_pred             ---------------------CCCccC-CCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence                                 566677 8999999999999999999999999 53

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.63  E-value=2.6e-17  Score=160.04  Aligned_cols=133  Identities=11%  Similarity=-0.011  Sum_probs=110.3

Q ss_pred             hHHHHHHHHH-cCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC--------CC
Q psy4222         143 ELVKLRKLIE-KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP--------AF  213 (367)
Q Consensus       143 ~lt~L~~A~~-~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~--------~~  213 (367)
                      +++.|+.|.. .++.+.+        ++++..|.+.        .||||+||+.|+.+++++|++.++..        ..
T Consensus        65 ~ll~~~~a~~~~~~~~~~--------~~l~~~g~~~--------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~  128 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLW--------SDAHKKGIKS--------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN  128 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHH--------HHHHHHTCCH--------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHH
T ss_pred             HHHHHHHHHhcCCCHHHH--------HHHHHcCCCc--------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCC
Confidence            4567887776 5778888        7887777543        59999999999999999999998722        12


Q ss_pred             cccccccCCCChHHHHHHHHhcCCC-----CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCCChHHHHH
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVN-----TPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSV--RNKEGKTPLDSS  286 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n-----~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~--~n~~G~TPL~iA  286 (367)
                      ..+++.++..|+.+++++|++.|++     +.++ + +||||+||..|+.++|++|+++| ++++.  +|..|.||||+|
T Consensus       129 ~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~~G~~eiv~~Ll~~g-a~~~~~~~d~~g~TpL~~A  205 (376)
T 2aja_A          129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFRWA  205 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-C-CCHHHHHHHCCCHHHHHHHHHcC-CccchhccCCCCCCHHHHH
Confidence            3467788889999999999999964     4444 3 99999999999999999999999 89887  899999999999


Q ss_pred             h-cCCcHHH
Q psy4222         287 S-GLDLLEN  294 (367)
Q Consensus       287 ~-~~g~~~~  294 (367)
                      + ..|+.+.
T Consensus       206 a~~~G~~ei  214 (376)
T 2aja_A          206 AVGRGHHNV  214 (376)
T ss_dssp             HSTTCCHHH
T ss_pred             HHHCCCHHH
Confidence            9 9999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.62  E-value=9.8e-16  Score=148.42  Aligned_cols=130  Identities=15%  Similarity=0.133  Sum_probs=93.6

Q ss_pred             hhhhhcccCCCCCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHH
Q psy4222         124 MSSLAAAEKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEM  203 (367)
Q Consensus       124 ~~~~~~~e~~~~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~  203 (367)
                      +..++..+...+.......+.|+||+|+..|+.++|        ++|++.|+++ +.+|..|+||||+|+..|+.+++++
T Consensus       216 v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv--------~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~  286 (368)
T 3jue_A          216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLAC--------EFLLQNGANV-NQADSAGRGPLHHATILGHTGLACL  286 (368)
T ss_dssp             HHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHH--------HHHHHcCCCC-CCCCCCCCCHHHHHHHcCcHHHHHH
Confidence            333455555555555446778999999999999999        9999999998 6889999999999999999999999


Q ss_pred             HHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC--CCCCCCCCCCCh
Q psy4222         204 LLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK--IQTSVRNKEGKT  281 (367)
Q Consensus       204 LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~--ad~~~~n~~G~T  281 (367)
                      ||+.|++                          ++..|. .|+||||+|+..|+.++|++|+..+.  ++....+..+.|
T Consensus       287 LL~~Gad--------------------------~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t  339 (368)
T 3jue_A          287 FLKRGAD--------------------------LGARDS-EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDET  339 (368)
T ss_dssp             HHHTTCC--------------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHC--------------
T ss_pred             HHHCcCC--------------------------CCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCC
Confidence            9999877                          566677 89999999999999999999998762  334456678899


Q ss_pred             HHHHHhcC
Q psy4222         282 PLDSSSGL  289 (367)
Q Consensus       282 PL~iA~~~  289 (367)
                      +++++...
T Consensus       340 ~l~i~~~~  347 (368)
T 3jue_A          340 YLDIFRDF  347 (368)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            99887644

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.59  E-value=7.3e-16  Score=137.68  Aligned_cols=104  Identities=13%  Similarity=0.064  Sum_probs=78.8

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhc-CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccccc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLY  218 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~-g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~  218 (367)
                      +..+.|+||+||..|+.++|        ++|+.. |+++ +.+|..|+||||+|+..|+.+++++||+.|++        
T Consensus       103 ~~~g~t~L~~A~~~~~~~~v--------~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~--------  165 (222)
T 3ehr_A          103 DKAGSTALYWACHGGHKDIV--------EMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLAKGAR--------  165 (222)
T ss_dssp             CTTSCCHHHHHHHTTCHHHH--------HHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC--------
T ss_pred             CCCCCCHHHHHHHcCCHHHH--------HHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------
Confidence            34567899999999999999        899888 8887 68899999999999999999999999999877        


Q ss_pred             ccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC
Q psy4222         219 DSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGK  280 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~  280 (367)
                                        ++..+. .|+||||+|+..|+.++++.|+..+ ++.+.+|.+|.
T Consensus       166 ------------------~~~~~~-~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~~  207 (222)
T 3ehr_A          166 ------------------TDLRNI-EKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAEDY  207 (222)
T ss_dssp             ------------------SCCCCT-TSCCHHHHCCSHHHHHHHC------------------
T ss_pred             ------------------CccccC-CCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhhh
Confidence                              556667 8999999999999999999999999 88888887654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.57  E-value=5.9e-15  Score=134.38  Aligned_cols=84  Identities=24%  Similarity=0.282  Sum_probs=76.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy4222         182 EGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECV  261 (367)
Q Consensus       182 d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv  261 (367)
                      +..|.||||+|++.|+.+++++||+ +++                          ++..+. .|+||||+||..|+.++|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--------------------------~~~~d~-~g~t~L~~A~~~g~~~~v   93 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRD--------------------------VDAVDE-NGRTALLFVAGLGSDKCV   93 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCC--------------------------TTCBCT-TSCBHHHHHHHHTCHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCC--------------------------CCCcCC-CCCCHHHHHHHCCCHHHH
Confidence            4568999999999999999999998 655                          566677 899999999999999999


Q ss_pred             HHHHhCCCCCCCCCC-CCCChHHHHHhcCCcHHH
Q psy4222         262 KRLIGCAKIQTSVRN-KEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       262 ~~LL~~g~ad~~~~n-~~G~TPL~iA~~~g~~~~  294 (367)
                      ++|+++| ++++.+| ..|+||||+|+..|+.+.
T Consensus        94 ~~Ll~~g-a~~~~~~~~~g~t~L~~A~~~g~~~~  126 (244)
T 3ui2_A           94 RLLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEV  126 (244)
T ss_dssp             HHHHHTT-CCTTCCCSSSCCCHHHHHHHTTCHHH
T ss_pred             HHHHHcC-CCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence            9999999 9999998 889999999999998874

>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}

Probab=98.72  E-value=6.5e-09  Score=71.16  Aligned_cols=48  Identities=23%  Similarity=0.269  Sum_probs=44.1

Q ss_pred             ccceEEecccccCCCCCCccCccccccccHHHHHHHHHHcccccccCCCCHHHHHHHHhc
Q psy4222          35 GIYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYH   94 (367)
Q Consensus        35 ~~~y~v~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~k~~k~ar~k~F~~~~~a~~~~~~   94 (367)
                      ..||+|+.+            .+++||++|.||++.++..+++++|+|.+.+||+.|+..
T Consensus         3 ~kyYaV~~G------------~~~GIy~sW~ec~~qV~g~~ga~yK~F~t~~eA~~~l~~   50 (53)
T 3bsu_A            3 HMFYAVRRG------------RKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRK   50 (53)
T ss_dssp             CCEEEEEES------------SSCEEESSHHHHHHHHTTCTTCEEEEESSHHHHHHHHHC
T ss_pred             CCEEEEEeC------------CCCceECCHHHHHHHhcCCCCCccCCCCCHHHHHHHHHh
Confidence            469999987            456999999999999999999999999999999999984

>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2

Probab=98.70  E-value=4.2e-09  Score=70.26  Aligned_cols=46  Identities=15%  Similarity=0.257  Sum_probs=42.2

Q ss_pred             cceEEecccccCCCCCCccCccccccccHHHHHHHHHHcccccccCCCCHHHHHHHHh
Q psy4222          36 IYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAY   93 (367)
Q Consensus        36 ~~y~v~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~k~~k~ar~k~F~~~~~a~~~~~   93 (367)
                      .||+|+.+            .+++||++|.||++.++..+++++|+|.+.+||+.|+.
T Consensus         2 kyYaV~~G------------~~~GIy~sW~ec~~qV~g~~ga~yK~F~t~~eA~~~l~   47 (47)
T 1qhk_A            2 NFYAVRKG------------RETGIYNTWNECKNQVDGYGGAIYKKFNSYEQAKSFLG   47 (47)
T ss_dssp             EEEEECSS------------SSCEEEEEHHHHHHHSSSCSSCCCEEESCHHHHHHHHC
T ss_pred             CEEEEEeC------------CCCceECCHHHHHHHhcCCCCCccCCCCCHHHHHHHhC
Confidence            59999986            45699999999999999999999999999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	367
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.004
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.004
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-04
d1qhka_	47	d.100.1.2 (A:) N-terminal domain of RNase HI {Bake	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (122), Expect = 5e-08
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 16/121 (13%)

Query: 178 TILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDI------ 231
           TILH     + +   + A    +  ++  I+           ++  S     +       
Sbjct: 179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 238

Query: 232 --------LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
                   ++   +N  D    +T L+ AA+ G++  V  L+        + NK G  P+
Sbjct: 239 LENLDLKWIIANMLNAQDSN-GDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPV 296

Query: 284 D 284
           D
Sbjct: 297 D 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 208 IGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 265
             + +F +LL +      +  +     L +N P      TPLH+     ++E VK L+
Sbjct: 76  QQHVSFDSLLQE------VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 127

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 186 YNALHVSTKAVNPAMTEMLLE----------IIGNPAFTNLLYDSDTPSYIERSDILLDL 235
             AL  + +  +  + ++LL+           +G  A  + L  SD       + +LLD 
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 236 --YVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
              VN   +   +TPL  A +   +  V+RL+    I+ +  + +GKT L 
Sbjct: 209 GADVNVRGER-GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 17/125 (13%)

Query: 151 IEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN 210
            EKG++  ++ L+ D     V++ D            +      +   A+T +LL+   +
Sbjct: 156 AEKGHVEVLKILL-DEMGADVNACDNMGRNALIHALLSSD---DSDVEAITHLLLDHGAD 211

Query: 211 PAFTNLLYDSDTP-------SYIERSDILLDLY---VNTPDKALNETPLHFAAKFGSVEC 260
                      TP        ++     LL+     +N  D    +T L  A +    + 
Sbjct: 212 VNVRG--ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD-GKTALLLAVELKLKKI 268

Query: 261 VKRLI 265
            + L 
Sbjct: 269 AELLC 273

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 5e-07
 Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 23/237 (9%)

Query: 61  FDNKEEALLFIKKNKKIRFKSFRNFQDAQNFAYHGSCGVNTSLLEAPASPSTVTAADPSA 120
           +     A L ++++                  +H +  +   LL    SP +      + 
Sbjct: 142 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP 201

Query: 121 LPQMSSLAAAEKPSPFKSLKSQELVK-------LRKLIEKGNLADVRKLVWDNPRYLVSS 173
           L   +     E              +       L    ++G+   V  L+       + +
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 261

Query: 174 GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLE------IIGNPAFTNLLYDSDTPSYIE 227
               T LH   +           +  + ++L++            +T L   S   +   
Sbjct: 262 KSGLTPLHLVAQEG---------HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 312

Query: 228 RSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
              +L           L  +PLH AA+ G  + V  L+       +  + +G TPL 
Sbjct: 313 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLA 368

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
            N  +    ETPLH AA+ G  E  K L+   K + + + K+ +TPL
Sbjct: 26  PNVSNVK-VETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPL 70

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
           TPLH A+  G +  VK L+       +V N + +TPL
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPL 37

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 12/87 (13%)

Query: 188 ALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP-------SYIERSDILLDL--YVN 238
            LHV++   +  + + LL+   +P  +N     +TP        + E +  LL     VN
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 239 TPDKALNETPLHFAAKFGSVECVKRLI 265
              K  ++TPLH AA+ G    VK L+
Sbjct: 61  AKAKD-DQTPLHCAARIGHTNMVKLLL 86

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPL 283
            PLH A        V+ L+         ++++G+ PL
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL 38

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
           TPL  A   G  +    L+     +  + + +G    D
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED 211

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 8e-07
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 246 ETPLHFAAKFGSVECVKRLI--GCAKIQTSVRNKEGKTPL 283
           +T LH A        +  L+          ++N  G+T L
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 17/173 (9%), Positives = 37/173 (21%), Gaps = 14/173 (8%)

Query: 93  YHGSCGVNTSLLEAPASPSTVTAADPSALPQMSSLAAAEKPSPFKSLKSQELVKLRKLIE 152
              +      LL+   S     +       Q  +   +  P+   S  + E  +  +  +
Sbjct: 87  RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146

Query: 153 KGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA 212
                +        P ++        ++       A     +         L       +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206

Query: 213 FTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI 265
              LL             +               TPL  A    +    + L 
Sbjct: 207 VLELL-------------LKAGADPTARMYG-GRTPLGSALLRPNPILARLLR 245

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 245 NETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD--SSSGLDLLE------NYL 296
             TPLH AA +G  E  + L+          NK G+T  D      L  LE      N L
Sbjct: 232 GWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

Query: 297 H 297
           H
Sbjct: 291 H 291

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLIGC---AKIQTSVRNKEGKTPL 283
           +TPLH A   G++  V RL+        +  + N   +TPL
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 44

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 248 PLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
            LH A+  G +  V+ L+  +   +S++N    TPL 
Sbjct: 180 ALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLM 215

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.7 bits (104), Expect = 8e-06
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 232 LLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC-------AKIQTSVRNKEGKTPLD 284
           +    VN  D   N T LH+ A   S E  + LI         A    +  + +  TPL 
Sbjct: 20  ITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 79

Query: 285 SSSGLDLLENYLHT 298
            +          + 
Sbjct: 80  LAVLARRRRLVAYL 93

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 245 NETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLD 284
            +TP+  AA+ G +E V  LI   A +     +    T   
Sbjct: 221 GKTPIMLAAQEGRIEVVMYLIQQGASV--EAVDATDHTARQ 259

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 6/31 (19%), Positives = 7/31 (22%), Gaps = 1/31 (3%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC 267
           V   D   + T    A        V     C
Sbjct: 247 VEAVDAT-DHTARQLAQANNHHNIVDIFDRC 276

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 26/195 (13%), Positives = 46/195 (23%), Gaps = 16/195 (8%)

Query: 131 EKPSPFKSLKSQELVKLRKLIEKGNLADVRKLVWDN--PRYLVSSGDFPTILHEGCRYNA 188
           E     + +       L +     N   +  L +      +L  + +   +    C Y A
Sbjct: 11  ENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYA 70

Query: 189 LHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDL-----YVNTPDKA 243
            +        +         G  +       + T       D L  L      V     A
Sbjct: 71  HYNRNAKQLWSD----AHKKGIKSEVICFVAAIT-GCSSALDTLCLLLTSDEIVKVIQ-A 124

Query: 244 LNETPLHFAAKFGSVECVKRLIGC-AKIQTSVRNKEGKTPLDSSSGLDLLEN--YLHTKL 300
            N      AA+ G +  + RL         ++   E       ++    L     L    
Sbjct: 125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 184

Query: 301 LDTVAAKKDETNGNT 315
                A     N   
Sbjct: 185 PTEATAMIQAENYYA 199

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 11/141 (7%)

Query: 147 LRKLIEKGNLADVRKLVWDNPRYLVSSGDFP--TILHEGCRYNALHVSTKAVNPAMTEML 204
           +  L   G L ++++ +  +   L +  D    T LH  C      +    +   +    
Sbjct: 7   VCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN- 64

Query: 205 LEIIGNPAFTNLLYDSDTPSYIERSDILLDL--YVNTPDKALNETPLHFAAKFGSVECVK 262
                + A  + L+ + +    E    LL     VN  ++    TPLH+AA     E   
Sbjct: 65  ---DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYAASKNRHEIAV 120

Query: 263 RLIGCAKIQTSVRNKEGKTPL 283
            L+         ++    T +
Sbjct: 121 MLLE-GGANPDAKDHYEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 186 YNALHVSTKAVNPAMTEMLLEIIGNPAFTN-----LLYDSDTPSYIERSDILLDLYVNTP 240
              LH +       +  MLLE   NP   +      ++ +     ++   ILL    +T 
Sbjct: 104 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 163

Query: 241 DKALN-ETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLD 284
            +     TPLH A     VE  K L+        + NKE KTPL 
Sbjct: 164 IQDTEGNTPLHLACDEERVEEAKLLV-SQGASIYIENKEEKTPLQ 207

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 3/41 (7%)

Query: 246 ETPLHFAAKFGSVECVKRLI---GCAKIQTSVRNKEGKTPL 283
           ++ LH A           +I          + +N   +TPL
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL 43

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 8e-04
 Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 1/44 (2%)

Query: 245 NETPLHFAAKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSS 287
             +P        S    ++L     +    +   E +   D+ S
Sbjct: 178 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 221

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 22/138 (15%)

Query: 136 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFP--TILHEGCRYNALHVST 193
            +++K++++  L +    G   D+        +  +++G  P  T LH   R        
Sbjct: 11  CEAVKTRDIFGLLQAYADG--VDL------TEKIPLANGHEPDETALHLAVRSVDRT--- 59

Query: 194 KAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALN------ET 247
              +  + + L++  GN         +         +      +     ++       ET
Sbjct: 60  ---SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET 116

Query: 248 PLHFAAKFGSVECVKRLI 265
           PL  A +     C + L 
Sbjct: 117 PLDIAKRLKHEHCEELLT 134

>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: N-terminal domain of RNase HI
domain: N-terminal domain of RNase HI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 5/32 (15%), Positives = 15/32 (46%)

Query: 60 VFDNKEEALLFIKKNKKIRFKSFRNFQDAQNF 91
          +++   E    +       +K F +++ A++F
Sbjct: 14 IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSF 45

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIGC 267
           +N       ET LH AA+F   +  KRL+  
Sbjct: 15  LNATMDKTGETSLHLAARFARADAAKRLLDA 45

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)

Query: 236 YVNTPDKALNETPLHFAAKFGSVECVKRLI 265
            V   +    +T    A  +G  E V  + 
Sbjct: 125 NVGHRNHK-GDTACDLARLYGRNEVVSLMQ 153

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 246 ETPLHFAAKFGSVECVKRLI 265
           +    +A K G ++ VK  +
Sbjct: 3   DKEFMWALKNGDLDEVKDYV 22

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 237 VNTPDKALNETPLHFAAKFGSVECVKRLIG 266
           ++  D     TPL  A + G+ + V  L G
Sbjct: 126 LHRRDAR-GLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 247 TPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTP 282
             L  AA  G V+ V+RL+    +     N+ GKT 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 247 TPLHFAAKFGSVECVKRLI 265
             L  AA+ G  + V+ L+
Sbjct: 4   KKLLEAARAGQDDEVRILM 22

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 245 NETPLHFAAKFGSVECVKRLIGCA 268
              P+  A + G  +  + L   A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	367
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.89
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.88
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.87
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.86
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.84
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.83
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.83
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.81
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.8
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.78
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.76
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.7
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.7
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.7
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.69
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.69
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.67
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.67
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.65
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.61
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.61
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.59
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.59
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.37
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.32
d1qhka_	47	N-terminal domain of RNase HI {Baker's yeast (Sacc	98.68

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=8.3e-24  Score=176.33  Aligned_cols=137  Identities=23%  Similarity=0.183  Sum_probs=118.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----cccccc
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-----TNLLYD  219 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-----~~~~~~  219 (367)
                      |+||.||+.|+.++|        ++|++.|++.  ..|..|+||||+|+..++.++++.++........     ....+.
T Consensus         4 t~L~~Aa~~g~~~~v--------~~LL~~ga~~--~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (153)
T d1awcb_           4 KKLLEAARAGQDDEV--------RILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHM   73 (153)
T ss_dssp             HHHHHHHHHTCHHHH--------HHHHHHTCCC--CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHCCCHHHH--------HHHHHcCCCc--ccccCCCcccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999        8888999866  3688999999999999999999999988664322     223333


Q ss_pred             cCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         220 SDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      .....+.++++++...+++..  +. .|+||||+||..|+.++|++|+++| ++++.+|.+|.||||+|+..|+.+
T Consensus        74 ~~~~~~~~~~~~l~~~~~~~~~~~~-~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_          74 AASEGHANIVEVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccccceeeecccccCCccccccc-cCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHHHcCCHH
Confidence            445677889999999986665  56 8999999999999999999999999 999999999999999999999987

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=8.4e-25  Score=176.20  Aligned_cols=107  Identities=26%  Similarity=0.350  Sum_probs=100.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCC
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  224 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~  224 (367)
                      |||++||+.|+++.|        ++|++.|+++ +.++..|+||||+|+..|+.+++++|++.+++              
T Consensus         4 tpL~~A~~~g~~~~v--------~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d--------------   60 (118)
T d1myoa_           4 KEFMWALKNGDLDEV--------KDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD--------------   60 (118)
T ss_dssp             HHHHHHHHTTCHHHH--------HHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT--------------
T ss_pred             hHHHHHHHCCCHHHH--------HHHHHhhhcc-ccccccccccccccccccccccccccccccce--------------
Confidence            799999999999999        9999999998 67899999999999999999999999998876              


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhc
Q psy4222         225 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSG  288 (367)
Q Consensus       225 ~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~  288 (367)
                                  ++..+. .|+||||+|+.+|+.++|++|+++| +|++.+|.+|+||||+|..
T Consensus        61 ------------in~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~G-ad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          61 ------------INAPDK-HHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             ------------TTCCSS-SCSCHHHHHHTTTCCHHHHHHHTTC-CCSSSSSSSTCCCCCTCSS
T ss_pred             ------------eeeccc-ccccchhhhhhcCchhhhhhhhccc-ccceeeCCCCCCHHHHHhH
Confidence                        566677 8999999999999999999999999 9999999999999999854

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-23  Score=182.71  Aligned_cols=146  Identities=20%  Similarity=0.251  Sum_probs=117.5

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcc------
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTN------  215 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~------  215 (367)
                      .+.||||.||..|+.+.|+.|+    +.+++.|+++ +.+|..|+||||+|+..|+.+++++|++.+++.....      
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll----~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~   76 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLV----NLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   76 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHH----HHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCccHHHHHHHcCCHHHHHHHH----HHHHHCCCCC-CccCCCCCccceehhcccccccccccccccccccccccccccc
Confidence            3578999999999999998888    7778899888 6788999999999999999999999999876311100      


Q ss_pred             ----------------------------------------------------------------------cccccCCCCh
Q psy4222         216 ----------------------------------------------------------------------LLYDSDTPSY  225 (367)
Q Consensus       216 ----------------------------------------------------------------------~~~~~~~~~~  225 (367)
                                                                                            .++.+...+.
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence                                                                                  0000011445


Q ss_pred             HHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         226 IERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       226 ~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ..+++.+++.+....  +. .|.||||+||..|+.++|++|+++| +|++.+|.+|+||||+|+..|+++.
T Consensus       157 ~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~~~~di  225 (228)
T d1k1aa_         157 LSMVQLLLQHGANVNAQMY-SGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDI  225 (228)
T ss_dssp             HHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             hhhhhhhhhhccccccccc-cCcchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCCccc
Confidence            567778888775444  55 8999999999999999999999999 8999999999999999998887653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.6e-23  Score=182.37  Aligned_cols=151  Identities=24%  Similarity=0.194  Sum_probs=123.0

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCC-------------------------hhHHhcCCCccccCCCCCCcHHHHHH
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNP-------------------------RYLVSSGDFPTILHEGCRYNALHVST  193 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p-------------------------~~Ll~~g~~~~~~~d~~G~TpLh~Aa  193 (367)
                      .+.++.|+||+||..|+.++++.++....                         ++|++.|.++ +.+|..|+||||+|+
T Consensus        33 ~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~  111 (223)
T d1uoha_          33 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAA  111 (223)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHH
Confidence            44555677777777777777766653321                         5688888887 678999999999999


Q ss_pred             HcCCHHHHHHHHhhcCCCC-----CcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy4222         194 KAVNPAMTEMLLEIIGNPA-----FTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIG  266 (367)
Q Consensus       194 ~~g~~~iv~~LL~~~~d~~-----~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~  266 (367)
                      ..|+.+++++|++.|++++     ...+++.+...++.+++++|++.+.++.  +. .|+||||+|+..|+.++|++||+
T Consensus       112 ~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~-~g~TpL~~Aa~~g~~~~v~~LL~  190 (223)
T d1uoha_         112 SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLVS  190 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccC-CCCceeccccccCcHHHHHHHHH
Confidence            9999999999999988654     3345556667788899999999886554  66 89999999999999999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         267 CAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       267 ~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      +| ++++.+|.+|+||||+|. .|+.+
T Consensus       191 ~G-ad~~~~d~~g~tpl~~A~-~~~~~  215 (223)
T d1uoha_         191 QG-ASIYIENKEEKTPLQVAK-GGLGL  215 (223)
T ss_dssp             TT-CCSCCCCTTSCCHHHHCC-TTHHH
T ss_pred             CC-CCCCCCCCCCCCHHHHHH-CCCHH
Confidence            99 999999999999999984 45444

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=5e-23  Score=185.38  Aligned_cols=150  Identities=17%  Similarity=0.101  Sum_probs=108.9

Q ss_pred             CCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc--ccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC
Q psy4222         136 FKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT--ILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF  213 (367)
Q Consensus       136 f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~--~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~  213 (367)
                      |...+..+.|+||.||+.|+.+.|        ++|++.|+++.  +.++..|+||||+||..|+.+++++|++.|++...
T Consensus         2 ~~~i~~~G~t~Lh~A~~~~~~~~v--------~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~   73 (255)
T d1oy3d_           2 FGYVTEDGDTALHLAVIHQHEPFL--------DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV   73 (255)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHH--------HHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             CccCCcCCCCHHHHHHHcCCHHHH--------HHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccc
Confidence            444556677888888888888888        77777665532  34566778888888888888888888887653211


Q ss_pred             -----cccc-----------------------------------------------------------------------
Q psy4222         214 -----TNLL-----------------------------------------------------------------------  217 (367)
Q Consensus       214 -----~~~~-----------------------------------------------------------------------  217 (367)
                           ..++                                                                       
T Consensus        74 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  153 (255)
T d1oy3d_          74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA  153 (255)
T ss_dssp             CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTC
T ss_pred             cccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccc
Confidence                 1111                                                                       


Q ss_pred             ---------cccCCCChHHHHHHHHhcCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH
Q psy4222         218 ---------YDSDTPSYIERSDILLDLYVNTPD--KALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS  286 (367)
Q Consensus       218 ---------~~~~~~~~~~~v~~Ll~~~~n~~d--~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA  286 (367)
                               +.++..++.+++++|++.+.+...  ...|+||||+||+.|+.++|++|+++| ++++.+|..|+||||+|
T Consensus       154 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g-adin~~d~~g~t~L~~A  232 (255)
T d1oy3d_         154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSA  232 (255)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred             ccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCC-CCCCCCCCCCCCHHHHH
Confidence                     111224567788888888765552  237889999999999999999999988 89999999999999999


Q ss_pred             hcCCcHHH
Q psy4222         287 SGLDLLEN  294 (367)
Q Consensus       287 ~~~g~~~~  294 (367)
                      +..++.+.
T Consensus       233 ~~~~~~~i  240 (255)
T d1oy3d_         233 LLRPNPIL  240 (255)
T ss_dssp             HTSSCHHH
T ss_pred             HHCCCHHH
Confidence            98888664

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=1.7e-23  Score=190.18  Aligned_cols=149  Identities=15%  Similarity=0.128  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCc-----cc-
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT-----NL-  216 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~-----~~-  216 (367)
                      +.|+||+||..|+.++|+.++....+.+++.|+++ +.+|..|+||||+|+..|+.+++++||++|++.+..     .+ 
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            67999999999999999888887778889999999 678999999999999999999999999988753211     00 


Q ss_pred             -------------------------------------------------------------------------------c
Q psy4222         217 -------------------------------------------------------------------------------L  217 (367)
Q Consensus       217 -------------------------------------------------------------------------------~  217 (367)
                                                                                                     +
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence                                                                                           0


Q ss_pred             cccCCCChHHHHHHHH-hcCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         218 YDSDTPSYIERSDILL-DLYVNT--PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       218 ~~~~~~~~~~~v~~Ll-~~~~n~--~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +.+...++.+++++++ ..+.+.  .|. .|+||||+||+.|+.++|++|+++| ++++.+|.+|+||||+|+..|+.+.
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~-~g~tpL~~A~~~g~~~iv~~Ll~~g-adin~~d~~G~T~L~~A~~~~~~~i  269 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNI  269 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred             ccccccccccccccccccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            0011134455665544 445444  466 8999999999999999999999999 9999999999999999999998764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-22  Score=168.98  Aligned_cols=139  Identities=24%  Similarity=0.290  Sum_probs=121.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccccccc
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLYD  219 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~~  219 (367)
                      ++||.||..|+++.|        ++|++.|+++ +.+|..|+||||+|+ .|+.+++++|++.+++..     ....++.
T Consensus         3 ~~Lh~Aa~~g~~~~v--------~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~   72 (156)
T d1ihba_           3 NELASAAARGDLEQL--------TSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHD   72 (156)
T ss_dssp             HHHHHHHHHTCHHHH--------HHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCHHHH--------HHHHHCCCCc-CccCCcccccccccc-cccccccccccccccccccccccCcccccc
Confidence            789999999999999        9999999998 688999999999886 799999999999998754     2333444


Q ss_pred             cCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         220 SDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +...+....+++|+..+.+..  +. .|.+|||+|+..|+.+++++|+++++.+.+.+|.+|+||||+|+..++.+.
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~i  148 (156)
T d1ihba_          73 AARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV  148 (156)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHH
Confidence            566788889999998875554  56 899999999999999999999999966899999999999999999998874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=7.7e-23  Score=187.73  Aligned_cols=143  Identities=21%  Similarity=0.134  Sum_probs=104.7

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----cc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-----TN  215 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-----~~  215 (367)
                      ..+.|+|+.||+.|+++.|        ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++++.+...     ..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v--------~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~  108 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEV--------LRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI  108 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHH--------HHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCchHHHHHHHcCCHHHH--------HHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccc
Confidence            3456899999999999999        9999999998 68899999999999999999999999999865221     11


Q ss_pred             cccccCCC---------------------------------ChHHHHHHHHhc---------------------------
Q psy4222         216 LLYDSDTP---------------------------------SYIERSDILLDL---------------------------  235 (367)
Q Consensus       216 ~~~~~~~~---------------------------------~~~~~v~~Ll~~---------------------------  235 (367)
                      .++.+...                                 +..+.++.++..                           
T Consensus       109 ~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (291)
T d1s70b_         109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG  188 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccc
Confidence            12222122                                 222233333211                           


Q ss_pred             CC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         236 YV--NTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       236 ~~--n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ..  ...+. .|.||||+|+..|+.+++++|+++| ++++.++.+|+||||+|+..|+.+.
T Consensus       189 ~~~~~~~~~-~g~t~L~~a~~~~~~~~~~~Ll~~g-~din~~~~~g~TpL~~A~~~g~~~i  247 (291)
T d1s70b_         189 HINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEA  247 (291)
T ss_dssp             CCCCCCCTT-TCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccC-CCCChhhHHHHcCChhhhcccccce-ecccccccCCCCHHHHHHHcCCHHH
Confidence            11  11233 6788888888888888888888888 7888888888888888888887764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.4e-23  Score=166.64  Aligned_cols=113  Identities=23%  Similarity=0.265  Sum_probs=101.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCC
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPS  224 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~  224 (367)
                      ++||.|+..|+++.|        ++|++.|+++ +.++..|+||||+|+ .|+.+++++|++.|++              
T Consensus         5 ~~L~~Aa~~G~~~~v--------~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~--------------   60 (125)
T d1bi7b_           5 DWLATAAARGRVEEV--------RALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE--------------   60 (125)
T ss_dssp             THHHHHHHHTCHHHH--------HHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC--------------
T ss_pred             hHHHHHHHCCCHHHH--------HHHHHcCCcc-ccccccccccccccc-cccccccccccccccc--------------
Confidence            579999999999999        9999999998 688999999999775 7999999999998876              


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         225 YIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       225 ~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                                  ++..+...+.||||+||+.|+.++|++|+++| ++++.+|..|+||||+|+..|+.+.
T Consensus        61 ------------~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~G~T~l~~A~~~g~~~~  117 (125)
T d1bi7b_          61 ------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDV  117 (125)
T ss_dssp             ------------CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred             ------------cccccccccccccccccccccccccccccccc-cccccccCCCCCHHHHHHHcCCHHH
Confidence                        45555534557999999999999999999999 9999999999999999999998874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.5e-22  Score=167.71  Aligned_cols=137  Identities=21%  Similarity=0.270  Sum_probs=116.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhc-CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----ccccc
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-----TNLLY  218 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~-g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-----~~~~~  218 (367)
                      +.|+.||..|+++.|        ++|+.. +.++ +..|..|+||||+|+ .|+.+++++||+.+.+.+.     ..+++
T Consensus         4 ~~L~~Aa~~g~~~~v--------k~lL~~~~~~~-n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~   73 (156)
T d1bd8a_           4 DRLSGAAARGDVQEV--------RRLLHRELVHP-DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVH   73 (156)
T ss_dssp             HHHHHHHHHTCHHHH--------HHHHHTTCCCT-TCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHHcCCHHHH--------HHHHHhCCCCC-CccCCCCCccccccc-ccccccccccccccccccccccccccccc
Confidence            469999999999999        776665 5666 688999999999987 5889999999999887443     33455


Q ss_pred             ccCCCChHHHHHHHHhcCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         219 DSDTPSYIERSDILLDLYVN--TPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       219 ~~~~~~~~~~v~~Ll~~~~n--~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      .+...++.++++++++.+++  ..++ .|+||||+||..|+.+++++|+ .| ++++.+|.+|+||||+|+..|+.+.
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~~n~~~~-~~~t~L~~A~~~~~~~i~~~L~-~~-~~~~~~d~~G~TpL~~A~~~g~~~i  148 (156)
T d1bd8a_          74 DAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA-AE-SDLHRRDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHH-TT-SCTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred             cccccccccccccccccccccccccC-CCCeeecccccccccccccccc-cc-ccccccCCCCCCHHHHHHHcCCHHH
Confidence            55678889999999999865  4466 8999999999999999999888 56 8999999999999999999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.1e-22  Score=162.99  Aligned_cols=113  Identities=24%  Similarity=0.212  Sum_probs=101.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCC
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP  223 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~  223 (367)
                      ++.|+.||..|+++.|        ++|++.|+++ +.+|.+|+||||+|+..|+.+++++|++.+++             
T Consensus         2 l~lL~~A~~~G~~~~v--------~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-------------   59 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLV--------QRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-------------   59 (130)
T ss_dssp             HHHHHHHHHHTCHHHH--------HHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-------------
T ss_pred             hHHHHHHHHcCCHHHH--------HHHHHcCCCc-cccccccccccccccccccccccccccccccc-------------
Confidence            5789999999999999        9999999998 68899999999999999999999999998876             


Q ss_pred             ChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCChHHHHHh--cCCcHH
Q psy4222         224 SYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK-EGKTPLDSSS--GLDLLE  293 (367)
Q Consensus       224 ~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~-~G~TPL~iA~--~~g~~~  293 (367)
                                   ++..|. .|+||||+||.+|+.++|++|+++| ++++.++. .|+||++++.  ..|+.+
T Consensus        60 -------------~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~g-a~v~~~~~~~~~~~~~~~~a~~~g~~e  117 (130)
T d1ycsb1          60 -------------VNAADS-DGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQ  117 (130)
T ss_dssp             -------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCC
T ss_pred             -------------cccccc-cCcccccccchhhHHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHHcChHH
Confidence                         566677 8999999999999999999999999 99998875 5999988775  555543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.8e-22  Score=175.51  Aligned_cols=147  Identities=16%  Similarity=0.164  Sum_probs=126.6

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC------
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA------  212 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~------  212 (367)
                      .+..+.||||+||..|+.+++        ++|++.|+++ ..+|..|+||||+|+..|+.++++.|+..+....      
T Consensus        35 ~d~~g~TpLh~A~~~~~~~iv--------~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  105 (221)
T d1iknd_          35 QNNLQQTPLHLAVITNQPEIA--------EALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK  105 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHH--------HCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGG
T ss_pred             CCCCCCccccccccccccccc--------cccccccccc-cccccccccccccccccccccccchhhhhccccccccccc
Confidence            445677999999999999999        9999999998 6889999999999999999999999999865422      


Q ss_pred             -----CcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHH
Q psy4222         213 -----FTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDS  285 (367)
Q Consensus       213 -----~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~i  285 (367)
                           ....++.++..++.+++++|+..+....  +..+|+||||+|++.|+.++|++|+++| +|++.+|.+|+||||+
T Consensus       106 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g-ad~~~~~~~G~tpl~~  184 (221)
T d1iknd_         106 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQL  184 (221)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGG
T ss_pred             ccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcC-CcccccCCCCCCHHHH
Confidence                 2334455566788999999998886554  4347999999999999999999999999 9999999999999999


Q ss_pred             HhcCCcHHHH
Q psy4222         286 SSGLDLLENY  295 (367)
Q Consensus       286 A~~~g~~~~l  295 (367)
                      |+..++.+.+
T Consensus       185 A~~~~~~~~~  194 (221)
T d1iknd_         185 TWGRPSTRIQ  194 (221)
T ss_dssp             CTTSSCHHHH
T ss_pred             HHHCCCHHHH
Confidence            9998887643

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=4.2e-21  Score=169.80  Aligned_cols=142  Identities=23%  Similarity=0.229  Sum_probs=114.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCc---------c
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFT---------N  215 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~---------~  215 (367)
                      +|||+||..|+.+.|        +.|+..+....+.+|.+|+||||+|+..|+.+++++||+.|++....         .
T Consensus         2 ~pLh~A~~~g~~~~v--------~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   73 (229)
T d1ixva_           2 YPLHQACMENEFFKV--------QELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP   73 (229)
T ss_dssp             CHHHHHHHHTCHHHH--------HHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCH
T ss_pred             HhHHHHHHcCCHHHH--------HHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccc
Confidence            589999999999999        54444333333677899999999999999999999999998753211         1


Q ss_pred             cccc----------------------------------cCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHH
Q psy4222         216 LLYD----------------------------------SDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVE  259 (367)
Q Consensus       216 ~~~~----------------------------------~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~  259 (367)
                      .++.                                  ....++.+++++|++.+.+..  +. .|+||||+|+..|+.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~~~~~  152 (229)
T d1ixva_          74 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLK  152 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCC-CCCCccchhhhccccc
Confidence            1010                                  012467888999999886665  45 8999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHH
Q psy4222         260 CVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENY  295 (367)
Q Consensus       260 vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~l  295 (367)
                      ++++|++.+..+++.+|.+|+||||+|+..|+.+.+
T Consensus       153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v  188 (229)
T d1ixva_         153 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA  188 (229)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccccccccCCchhhhcccccHHHH
Confidence            999999998778999999999999999999988753

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.4e-20  Score=158.41  Aligned_cols=117  Identities=21%  Similarity=0.301  Sum_probs=98.2

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc-----ccCCCCCCcHHHHHHHc---CCHHHHHHHHhhcCCCCC
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT-----ILHEGCRYNALHVSTKA---VNPAMTEMLLEIIGNPAF  213 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~-----~~~d~~G~TpLh~Aa~~---g~~~iv~~LL~~~~d~~~  213 (367)
                      ..+..|+.|++.+++..+.+++        ..|.+..     ...+..|+||||+|++.   |+.+++++|++.|++   
T Consensus         5 ~~l~~L~~Av~~~dl~~l~~~~--------~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---   73 (154)
T d1dcqa1           5 AKLHSLCEAVKTRDIFGLLQAY--------ADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---   73 (154)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH--------HTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---
T ss_pred             HHHHHHHHHHHhCCHHHHHHHH--------HcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC---
Confidence            3456789999999999994444        4443321     12256699999999974   678999999998876   


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                                             ++..|. .|+||||+||+.|+.++|++|+++| ++++++|.+|+||||+|+..|+.+
T Consensus        74 -----------------------in~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~  128 (154)
T d1dcqa1          74 -----------------------LDKQTG-KGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEH  128 (154)
T ss_dssp             -----------------------TTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             -----------------------hhhhhh-hhccccccccccccccccccccccC-ccccccCCCCCCHHHHHHHcCCHH
Confidence                                   667777 8999999999999999999999999 999999999999999999999876


Q ss_pred             H
Q psy4222         294 N  294 (367)
Q Consensus       294 ~  294 (367)
                      .
T Consensus       129 i  129 (154)
T d1dcqa1         129 C  129 (154)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-20  Score=167.61  Aligned_cols=168  Identities=15%  Similarity=0.129  Sum_probs=128.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----Ccccccc
Q psy4222         145 VKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLYD  219 (367)
Q Consensus       145 t~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~~  219 (367)
                      +.|+.+|..|+++.|++++..++        .....+|..|+||||+||..|+.+++++|+..+.+..     ....++.
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~--------~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~   76 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADK--------SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI   76 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCG--------GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCC--------CcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccc
Confidence            46889999999999965553332        2235679999999999999999999999999976532     2333444


Q ss_pred             cCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHHHHh
Q psy4222         220 SDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLENYLH  297 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~ll~  297 (367)
                      +...++.+++++|++.++++.  +. .|+||||+|+.+|+.+++++|+++| ++++.+|..|.||||+|+..++.+..- 
T Consensus        77 ~~~~~~~~i~~~Ll~~~~d~~~~d~-~g~tpL~~A~~~~~~e~~~~Ll~~g-~d~~~~~~~~~t~L~~a~~~~~~~~~~-  153 (223)
T d1uoha_          77 AASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYEATAMHRAAAKGNLKMIH-  153 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHH-
T ss_pred             cccccccchhHHHhccCceeEeeCC-CCCchhhHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCccchhhhhcCCcchhh-
Confidence            456788899999999986554  66 8999999999999999999999999 999999999999999999998876421 


Q ss_pred             hhchHHHHhccCCCCCCCCCCCCccccchHHHhccC
Q psy4222         298 TKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVN  333 (367)
Q Consensus       298 ~~~~~~l~~~~~~~~~~t~~~~~~~~~~~l~~~~~~  333 (367)
                           .+...     +..++....+..+|++..+..
T Consensus       154 -----~L~~~-----~~~i~~~d~~g~TpL~~Aa~~  179 (223)
T d1uoha_         154 -----ILLYY-----KASTNIQDTEGNTPLHLACDE  179 (223)
T ss_dssp             -----HHHHT-----TCCSCCCCTTCCCHHHHHHHT
T ss_pred             -----hhccc-----cceeeeccCCCCceecccccc
Confidence                 11111     122334445566777776654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.2e-20  Score=166.17  Aligned_cols=144  Identities=22%  Similarity=0.273  Sum_probs=114.1

Q ss_pred             hhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC----------
Q psy4222         142 QELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP----------  211 (367)
Q Consensus       142 ~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~----------  211 (367)
                      ++.|.||+||+.|++++|        ++|++.|+++....+..|+||||+|+..|+.+++++|++.+...          
T Consensus         4 ~~~~~L~~Ai~~~~~e~v--------k~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~   75 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLV--------QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHH--------HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCcHHHHHHHHcCCHHHH--------HHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchh
Confidence            567899999999999999        99999999985455667999999999999999999999864310          


Q ss_pred             -----------------------------------------------------------------------CCccccccc
Q psy4222         212 -----------------------------------------------------------------------AFTNLLYDS  220 (367)
Q Consensus       212 -----------------------------------------------------------------------~~~~~~~~~  220 (367)
                                                                                             ....+++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  155 (285)
T d1wdya_          76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  155 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred             hHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHH
Confidence                                                                                   000001100


Q ss_pred             --------------------------------------CCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHH
Q psy4222         221 --------------------------------------DTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVEC  260 (367)
Q Consensus       221 --------------------------------------~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~v  260 (367)
                                                            ...+...++++|++.|+++.  +. .|.||||+|++.|+.++
T Consensus       156 ~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~-~g~t~L~~a~~~~~~~~  234 (285)
T d1wdya_         156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGL  234 (285)
T ss_dssp             HHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT-TSCCHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCC-CCCCccchhhhcCcHHH
Confidence                                                  11233457777777776655  45 89999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         261 VKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       261 v~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      |++||++++++++.+|.+|.||||+|+..|+.+.
T Consensus       235 v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~ei  268 (285)
T d1wdya_         235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI  268 (285)
T ss_dssp             HHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence            9999986449999999999999999999999874

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=8.4e-21  Score=176.46  Aligned_cols=137  Identities=21%  Similarity=0.264  Sum_probs=102.9

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCC-------HHHHHHHHhhcC--C
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVN-------PAMTEMLLEIIG--N  210 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~-------~~iv~~LL~~~~--d  210 (367)
                      +..+.|+||+||..|+.++|        ++|++.|+++ +.+|..|+||||+||..++       .+++++|.....  +
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v--------~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELV--------KHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             CCCCCCHHHHHHHcCCHHHH--------HHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            56677999999999999999        9999999999 5889999999999998765       245555544322  1


Q ss_pred             CCCccccccc----CCCChHHH-----------------------------------------------HHHHHhcCCCC
Q psy4222         211 PAFTNLLYDS----DTPSYIER-----------------------------------------------SDILLDLYVNT  239 (367)
Q Consensus       211 ~~~~~~~~~~----~~~~~~~~-----------------------------------------------v~~Ll~~~~n~  239 (367)
                      ......+|.+    ...+....                                               +..++...+|.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  254 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  254 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence            1112222211    11111111                                               12233444788


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHh
Q psy4222         240 PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSS  287 (367)
Q Consensus       240 ~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~  287 (367)
                      +|. .|+||||+||+.|+.++|++||++| |+++++|+.|+||||+|+
T Consensus       255 ~D~-~G~TpLh~A~~~g~~~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDS-NGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCT-TSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             CCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence            888 9999999999999999999999999 999999999999999996

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.9e-20  Score=176.04  Aligned_cols=144  Identities=20%  Similarity=0.201  Sum_probs=123.3

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----c
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-----T  214 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-----~  214 (367)
                      +..+.|+|+.|+..++.+.+        ++++..+... ...+..|.||||.|+..++.+++++|++.|++...     .
T Consensus       228 ~~~~~t~l~~a~~~~~~~~~--------~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~  298 (408)
T d1n11a_         228 SVQGVTPLHLAAQEGHAEMV--------ALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY  298 (408)
T ss_dssp             CTTCCCHHHHHHHTTCHHHH--------HHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCC
T ss_pred             CCCCCCHHHHHHHhCcHhHh--------hhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCcccccccccc
Confidence            44556889999999999999        7777777665 46788899999999999999999999999987543     3


Q ss_pred             ccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcH
Q psy4222         215 NLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLL  292 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~  292 (367)
                      .+++.+...+..++++++++.|++++  |. .|.||||+||++|+.++|++||++| |+++++|++|+||||+|++.|++
T Consensus       299 t~L~~~~~~~~~~~~~~ll~~g~~in~~d~-~G~T~Lh~A~~~g~~~iv~~Ll~~G-Ad~n~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         299 TPLHVASHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             CHHHHHHHSSCSHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTTCH
T ss_pred             ccchhhcccCcceeeeeeccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCH
Confidence            34555566778889999999986654  66 8999999999999999999999999 99999999999999999999998


Q ss_pred             HH
Q psy4222         293 EN  294 (367)
Q Consensus       293 ~~  294 (367)
                      +.
T Consensus       377 ~i  378 (408)
T d1n11a_         377 SV  378 (408)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=1.1e-19  Score=158.19  Aligned_cols=143  Identities=20%  Similarity=0.169  Sum_probs=115.4

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcC-----------
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIG-----------  209 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~-----------  209 (367)
                      ..+.|+||+||+.|+.++|        ++|+..|+.+ +.++..+.++++.++..++............           
T Consensus        21 ~~G~t~L~~A~~~g~~e~v--------~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (209)
T d1ot8a_          21 KTGETSLHLAARFARADAA--------KRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGT   91 (209)
T ss_dssp             HHCCCHHHHHHHTTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHH--------HHHHhhcccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            4567899999999999999        8888888887 5778888899999888888777665555421           


Q ss_pred             -----------------------C-----CCCcccccccCCCChHHHHHHHHhcCCCC--CCCCCCCcHHHHHHHcCCHH
Q psy4222         210 -----------------------N-----PAFTNLLYDSDTPSYIERSDILLDLYVNT--PDKALNETPLHFAAKFGSVE  259 (367)
Q Consensus       210 -----------------------d-----~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~--~d~~~g~TpLH~Aa~~g~~~  259 (367)
                                             +     .....+++.+...+...+++.+++.+.+.  .|. .|.||||+||.+|+.+
T Consensus        92 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~-~g~TpL~~A~~~g~~~  170 (209)
T d1ot8a_          92 TPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDD-KDETPLFLAAREGSYE  170 (209)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHH
T ss_pred             ccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccc-ccccccchhccccHHH
Confidence                                   1     11122233334467788899999887554  466 8999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         260 CVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       260 vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +|++||++| +|++.+|..|+||||+|++.|+.+.
T Consensus       171 ~v~~Ll~~g-ad~n~~d~~g~Tpl~~A~~~~~~~i  204 (209)
T d1ot8a_         171 ASKALLDNF-ANREITDHMDRLPRDVASERLHHDI  204 (209)
T ss_dssp             HHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            999999999 9999999999999999999999874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3.5e-20  Score=163.81  Aligned_cols=143  Identities=15%  Similarity=0.106  Sum_probs=105.8

Q ss_pred             CCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCcc--ccCCCCCCcHHHHHHHcCCHHHHHHHHh---------
Q psy4222         138 SLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPT--ILHEGCRYNALHVSTKAVNPAMTEMLLE---------  206 (367)
Q Consensus       138 ~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~--~~~d~~G~TpLh~Aa~~g~~~iv~~LL~---------  206 (367)
                      ..+.++.||||+|+..|+.++|        ++|++.|+++.  ...+..|++|+|+|+..+..++++.++.         
T Consensus        29 ~~d~~G~TpL~~A~~~g~~~iv--------~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (229)
T d1ixva_          29 QKDQDGRIPLHWSVSFQAHEIT--------SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK  100 (229)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHH--------HHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTC
T ss_pred             ccCCCCCCHHHHHHHcCCcccc--------chhhhhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            3557788999999999999999        66666665542  1234445555555555555555555444         


Q ss_pred             --------------------------hcCC-----CCCcccccccCCCChHHHHHHHHhcC---CCCCCCCCCCcHHHHH
Q psy4222         207 --------------------------IIGN-----PAFTNLLYDSDTPSYIERSDILLDLY---VNTPDKALNETPLHFA  252 (367)
Q Consensus       207 --------------------------~~~d-----~~~~~~~~~~~~~~~~~~v~~Ll~~~---~n~~d~~~g~TpLH~A  252 (367)
                                                .+.+     .....+++.++..++.+++++|++.+   ++..+. .|+||||+|
T Consensus       101 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~-~g~TpLh~A  179 (229)
T d1ixva_         101 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHA  179 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCT-TSCCHHHHH
T ss_pred             cccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccccccccc-ccCCchhhh
Confidence                                      4332     22334455556678889999999876   455677 999999999


Q ss_pred             HHcCCHHHHHHHHh-CCCCCCCCCCCCCChHHHHHhcCC
Q psy4222         253 AKFGSVECVKRLIG-CAKIQTSVRNKEGKTPLDSSSGLD  290 (367)
Q Consensus       253 a~~g~~~vv~~LL~-~g~ad~~~~n~~G~TPL~iA~~~g  290 (367)
                      +..|+.++|++||+ +| ++++++|.+|+||||+|+..+
T Consensus       180 ~~~~~~~~v~~Ll~~~g-ad~~~~d~~g~t~l~~A~~~~  217 (229)
T d1ixva_         180 LAEGHGDAAVLLVEKYG-AEYDLVDNKGAKAEDVALNEQ  217 (229)
T ss_dssp             HHTTCHHHHHHHHHHHC-CCSCCCCTTSCCTGGGCSCHH
T ss_pred             cccccHHHHHHHHHhcC-CCCCCcCCCCCCHHHHHhhHH
Confidence            99999999999997 58 999999999999999998653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.3e-20  Score=162.68  Aligned_cols=147  Identities=17%  Similarity=0.154  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----cccc
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-----TNLL  217 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-----~~~~  217 (367)
                      +.|+||+|+..|+.+.+.+++    +++...|+++ +.+|..|+||||+||..|+.+++++|++.|++...     ..++
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li----~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l   76 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVI----RQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   76 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCC----C-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             CChHHHHHHHcCCHHHHHHHH----HHHHhCCCCc-ccCCCCCCcccccccccccccccccccccccccccccccccccc
Confidence            357999999999998887777    7777888887 68899999999999999999999999999987543     3445


Q ss_pred             cccCCCChHHHHHHHHhcCCCCCC-------CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCChHHHHHhcC
Q psy4222         218 YDSDTPSYIERSDILLDLYVNTPD-------KALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRN-KEGKTPLDSSSGL  289 (367)
Q Consensus       218 ~~~~~~~~~~~v~~Ll~~~~n~~d-------~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n-~~G~TPL~iA~~~  289 (367)
                      +.+...++.+++++|+..+.....       ...|.||||+|+..|+.+++++|+..| +.++.++ .+|.||||+|+..
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~G~T~L~~A~~~  155 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDL  155 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHT
T ss_pred             ccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccC-cccccccccCCCCcccccccc
Confidence            555667788999999987644332       126899999999999999999999999 7777665 6799999999999


Q ss_pred             CcHHHH
Q psy4222         290 DLLENY  295 (367)
Q Consensus       290 g~~~~l  295 (367)
                      |+.+.+
T Consensus       156 g~~~~v  161 (221)
T d1iknd_         156 QNPDLV  161 (221)
T ss_dssp             TCHHHH
T ss_pred             ccHHHH
Confidence            998753

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-18  Score=165.69  Aligned_cols=139  Identities=22%  Similarity=0.226  Sum_probs=100.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCC-----ccccc
Q psy4222         144 LVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAF-----TNLLY  218 (367)
Q Consensus       144 lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~-----~~~~~  218 (367)
                      +||||.||..|+++.|        ++|++.|+++ +..|..|+||||+||..|+.+++++||++|++.+.     ..+++
T Consensus         1 ~TpL~~Aa~~g~~~~v--------~~Ll~~g~~i-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~   71 (408)
T d1n11a_           1 LTPLHVASFMGHLPIV--------KNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH   71 (408)
T ss_dssp             CCHHHHHHHHTCHHHH--------HHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred             CChHHHHHHCcCHHHH--------HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence            5899999999999999        9999999988 67889999999999999999999999999886432     22223


Q ss_pred             ccCCC------------------------------------------------------------------ChHHHHHHH
Q psy4222         219 DSDTP------------------------------------------------------------------SYIERSDIL  232 (367)
Q Consensus       219 ~~~~~------------------------------------------------------------------~~~~~v~~L  232 (367)
                      .++..                                                                  ++.++++.|
T Consensus        72 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~l  151 (408)
T d1n11a_          72 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL  151 (408)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHH
Confidence            22222                                                                  344566666


Q ss_pred             HhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         233 LDLYVNTP--DKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       233 l~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      ++.+.+..  +. .|.+|||+|+..|+.+++++|+.+| ++++..+..|.||+|+++.....+
T Consensus       152 l~~~~~~~~~~~-~~~~~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~~~~~~~~~  212 (408)
T d1n11a_         152 LERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVE  212 (408)
T ss_dssp             HHTTCCTTCCCS-SCCCHHHHHHHTTCHHHHHHHGGGT-CCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHcCCCCCcCCC-cCchHHHHHHHcCCHHHHHHHHhcC-CcccccCCCCCCcchhhhccchhh
Confidence            66654443  33 5666666666666666666666666 666666666666666666555544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.70  E-value=4.1e-18  Score=154.11  Aligned_cols=118  Identities=14%  Similarity=0.088  Sum_probs=93.1

Q ss_pred             HHHHHHHHc-CCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCC
Q psy4222         145 VKLRKLIEK-GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTP  223 (367)
Q Consensus       145 t~L~~A~~~-G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~  223 (367)
                      ||||.++.. |+.+.+        +.|...+.+.  .....|+||||+||..|+.++|++|+...               
T Consensus         2 ~p~~~~~~~~~~~~~~--------~~l~~~~~n~--~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~---------------   56 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAIT--------EPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHE---------------   56 (277)
T ss_dssp             CCCHHHHHHHSSSCCC--------SCCSTTTTTT--CCCSSCCCHHHHHHCTTCCSCCTTHHHHH---------------
T ss_pred             ChHHHHHHhCCCHHHH--------HHHHhcCCCc--CCCCCCccHHHHHHHcCCHHHHHHHHhcc---------------
Confidence            345544444 555555        5555555444  23356999999999999999999998753               


Q ss_pred             ChHHHHHHHHhcCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         224 SYIERSDILLDLYVNT--PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       224 ~~~~~v~~Ll~~~~n~--~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                           .+.+++.|+++  .|. .|+||||+||..|+.++|++|+++| ++++.+|.+|+|||++|+..++.+.
T Consensus        57 -----~~~~l~~Gadvn~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~G-ad~n~~~~~g~t~l~~a~~~~~~~~  122 (277)
T d2fo1e1          57 -----AKECIAAGADVNAMDC-DENTPLMLAVLARRRRLVAYLMKAG-ADPTIYNKSERSALHQAAANRDFGM  122 (277)
T ss_dssp             -----HHHHHHTCCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             -----hhHHHHcCCCccccCC-CCCeeeccccccccccccccccccc-cccccccccccccccchhhhcchhh
Confidence                 35667777655  466 9999999999999999999999999 9999999999999999998887654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.1e-17  Score=137.63  Aligned_cols=93  Identities=20%  Similarity=0.240  Sum_probs=83.1

Q ss_pred             hhhHHHHHHHHHc---CCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccc
Q psy4222         141 SQELVKLRKLIEK---GNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLL  217 (367)
Q Consensus       141 ~~~lt~L~~A~~~---G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~  217 (367)
                      ..+.|+||+|++.   |.+++|        ++|++.|+++ +.+|..|+||||+||+.|+.+++++|++.|++       
T Consensus        43 ~~g~t~Lh~A~~~~~~~~~~iv--------~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad-------  106 (154)
T d1dcqa1          43 EPDETALHLAVRSVDRTSLHIV--------DFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRGKAS-------  106 (154)
T ss_dssp             STTCBHHHHHHHHCCTTTHHHH--------HHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------
T ss_pred             CCCCchHHHHHHhcCCCCHHHH--------HHHHHcCCCh-hhhhhhhccccccccccccccccccccccCcc-------
Confidence            3456899999975   678888        9999999998 68899999999999999999999999999877       


Q ss_pred             cccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy4222         218 YDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAK  269 (367)
Q Consensus       218 ~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~  269 (367)
                                         ++..+. .|+||||+|++.|+.+++++|++.+.
T Consensus       107 -------------------~~~~d~-~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1         107 -------------------IEIANE-SGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             -------------------TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             -------------------ccccCC-CCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence                               666777 99999999999999999999999773

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.3e-17  Score=146.72  Aligned_cols=99  Identities=17%  Similarity=0.104  Sum_probs=87.2

Q ss_pred             CCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccc
Q psy4222         137 KSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL  216 (367)
Q Consensus       137 ~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~  216 (367)
                      ...+..+.|+||+||+.|+.+.|        ++|++.+.++...++..|.||||+|++.|+.+++++|+++|++      
T Consensus       152 n~~d~~g~TpLh~A~~~~~~~~v--------~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad------  217 (255)
T d1oy3d_         152 EAENYDGHTPLHVAVIHKDAEMV--------RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD------  217 (255)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHH--------HHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred             ccccccCcccccccccccccccc--------cchhcccccccccccccccccccccccccHHHHHHHHHHCCCC------
Confidence            33455667899999999999999        8888988888666778899999999999999999999998876      


Q ss_pred             ccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q psy4222         217 LYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGCAKIQ  271 (367)
Q Consensus       217 ~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad  271 (367)
                                          ++..+. .|+||||+|+..|+.+++++|+++| |+
T Consensus       218 --------------------in~~d~-~g~t~L~~A~~~~~~~i~~~Ll~~G-a~  250 (255)
T d1oy3d_         218 --------------------PTARMY-GGRTPLGSALLRPNPILARLLRAHG-AP  250 (255)
T ss_dssp             --------------------TTCCCT-TSCCHHHHHHTSSCHHHHHHHHHTT-CC
T ss_pred             --------------------CCCCCC-CCCCHHHHHHHCCCHHHHHHHHHcC-CC
Confidence                                566677 8999999999999999999999999 75

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.69  E-value=4.2e-18  Score=161.33  Aligned_cols=151  Identities=13%  Similarity=0.089  Sum_probs=117.1

Q ss_pred             CCCCCChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccC--CCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-
Q psy4222         135 PFKSLKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILH--EGCRYNALHVSTKAVNPAMTEMLLEIIGNP-  211 (367)
Q Consensus       135 ~f~~~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~--d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-  211 (367)
                      .....+..+.||||+||+.|++++|        ++|++.|+++. ..  +.+|+||||+||..||.+||++|++.+++. 
T Consensus       118 ~in~~~~~g~taL~~Aa~~G~~~~v--------~~Ll~~g~~~~-~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~  188 (346)
T d2ajaa1         118 IVKVIQAENYQAFRLAAENGHLHVL--------NRLCELAPTEI-MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA  188 (346)
T ss_dssp             SCC--CHHHHHHHHHHHHTTCHHHH--------HHHHHSCTTTH-HHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGH
T ss_pred             cccccCCCCCCHHHHHHHCCCHHHH--------HHHHHcCCCcc-ccccccCCCChhHHHHHHhhHHHHHHHHHcCCccc
Confidence            4555678889999999999999999        99999998873 33  346899999999999999999999988642 


Q ss_pred             -------CCcccccccCCCChHHHHHHHHhcCCCCC-----------------------------------CC-C-----
Q psy4222         212 -------AFTNLLYDSDTPSYIERSDILLDLYVNTP-----------------------------------DK-A-----  243 (367)
Q Consensus       212 -------~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~-----------------------------------d~-~-----  243 (367)
                             +.+.+++.++..|+.+++++|++.|++..                                   .. .     
T Consensus       189 ~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  268 (346)
T d2ajaa1         189 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV  268 (346)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCS
T ss_pred             ccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHH
Confidence                   23456777888999999999987652110                                   00 0     


Q ss_pred             ---------CCCcHHHHHHHcCCHHHHHHHHhCCC----CCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         244 ---------LNETPLHFAAKFGSVECVKRLIGCAK----IQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       244 ---------~g~TpLH~Aa~~g~~~vv~~LL~~g~----ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                               .+.++||.|+..|+.++|++|++.+.    ++.+..+.+|+||||+||+.|+.+.
T Consensus       269 ~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~  332 (346)
T d2ajaa1         269 TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA  332 (346)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTH
T ss_pred             hcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHH
Confidence                     12368889999999999999999873    1234455689999999999998764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.69  E-value=1.5e-18  Score=164.42  Aligned_cols=125  Identities=11%  Similarity=0.061  Sum_probs=82.8

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-------C
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-------F  213 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-------~  213 (367)
                      ..+.|+|+.||+.|+.+.+ +++    +.|+..|+++ +.++..|+||||+||+.||.++|++|++.|++..       .
T Consensus        88 ~~~~t~L~~Aa~~g~~~~~-~~~----~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g  161 (346)
T d2ajaa1          88 IKSEVICFVAAITGCSSAL-DTL----CLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN  161 (346)
T ss_dssp             CCHHHHHHHHHHHCCHHHH-HHH----TTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH
T ss_pred             CCCCcHHHHHHHhCCHHHH-HHH----HHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCC
Confidence            3467999999999998877 222    5588899888 6788899999999999999999999999987642       2


Q ss_pred             cccccccCCCChHHHHHHHHhcCCCCC-----CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYVNTP-----DKALNETPLHFAAKFGSVECVKRLIGCAKIQTS  273 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~n~~-----d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~  273 (367)
                      .++++.++..|+.+++++|++.|.+..     +. +|.||||+|+.+|+.++|++|+++| ++++
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~-~~~t~l~~A~~~g~~~iv~~Ll~~g-a~~~  224 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE-NYYAFRWAAVGRGHHNVINFLLDCP-VMLA  224 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHH-HHHHHHHHHSTTCCHHHHHHHTTSH-HHHH
T ss_pred             CChhHHHHHHhhHHHHHHHHHcCCcccccccccC-CCcchhhHHhhcCHHHHHHHHHhCC-CCcc
Confidence            234445555566666666665554322     12 3445555555556666666666655 4443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=3.9e-17  Score=130.57  Aligned_cols=81  Identities=20%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy4222         186 YNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLI  265 (367)
Q Consensus       186 ~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL  265 (367)
                      .|||++|++.|+.+++++|++.|++                          ++..+. .|+||||+||.+|+.+++++|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d--------------------------~n~~~~-~g~t~lh~A~~~~~~~~~~~ll   55 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED--------------------------VNRTLE-GGRKPLHYAADCGQLEILEFLL   55 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC--------------------------CCCCSS-SSCCTTHHHHHHSTTTHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc--------------------------cccccc-cccccccccccccccccccccc
Confidence            3899999999999999999998876                          556667 8999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         266 GCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       266 ~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++| ++++.+|.+|+||||+|+..|+.+.
T Consensus        56 ~~g-~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_          56 LKG-ADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HSS-CTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             ccc-ceeeecccccccchhhhhhcCchhh
Confidence            999 9999999999999999999998874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=8.2e-17  Score=139.72  Aligned_cols=154  Identities=14%  Similarity=0.109  Sum_probs=114.4

Q ss_pred             hhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCCCccc-----cccc----------------------
Q psy4222         168 RYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNL-----LYDS----------------------  220 (367)
Q Consensus       168 ~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~-----~~~~----------------------  220 (367)
                      ++|++.|+++....|.+|.||||+||..|+.+++++||+.+++.+...-     .+..                      
T Consensus         6 ~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (209)
T d1ot8a_           6 SDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNA   85 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTC
T ss_pred             HHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            9999999988444688899999999999999999999999875332110     0000                      


Q ss_pred             ------------CCCChHHHHHHHHhcCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCChHHHHH
Q psy4222         221 ------------DTPSYIERSDILLDLYVNT--PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNKEGKTPLDSS  286 (367)
Q Consensus       221 ------------~~~~~~~~v~~Ll~~~~n~--~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~~G~TPL~iA  286 (367)
                                  .........+.|...+.++  .+. .|+||||+|+.+|..++++.|++++ ++++.+|..|.||||+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~~-~~~~~~d~~g~TpL~~A  163 (209)
T d1ot8a_          86 RMHDGTTPLILAARLAIEGMVEDLITADADINAADN-SGKTALHWAAAVNNTEAVNILLMHH-ANRDAQDDKDETPLFLA  163 (209)
T ss_dssp             CCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHH
T ss_pred             ccccccccccccccccchhhhhhhhhhcccccccCC-CCCCcchhhcccCcceeeeeecccc-ccccccccccccccchh
Confidence                        0022334667788877655  456 8999999999999999999999999 89999999999999999


Q ss_pred             hcCCcHHHHHhhhchHHHHhccCCCCCCCCCCCCccccchHHHhccCC
Q psy4222         287 SGLDLLENYLHTKLLDTVAAKKDETNGNTVDQPSVDMISPIEKLCVNF  334 (367)
Q Consensus       287 ~~~g~~~~ll~~~~~~~l~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~  334 (367)
                      +..|+.+.+-     .++..+.      .++....+..+|++..|.+.
T Consensus       164 ~~~g~~~~v~-----~Ll~~ga------d~n~~d~~g~Tpl~~A~~~~  200 (209)
T d1ot8a_         164 AREGSYEASK-----ALLDNFA------NREITDHMDRLPRDVASERL  200 (209)
T ss_dssp             HHTTCHHHHH-----HHHHTTC------CTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccHHHHHH-----HHHHCCC------CCCCcCCCCCCHHHHHHHcC
Confidence            9999887532     1222222      22334455667888777654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1e-16  Score=130.34  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=75.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy4222         187 NALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIG  266 (367)
Q Consensus       187 TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~  266 (367)
                      ++||.||..|+.++|++|+++|+|                          +|..+. .|+||||+||..|+.+++++|++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d--------------------------~n~~d~-~g~t~Lh~A~~~~~~~~~~~ll~   55 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD--------------------------PSLPND-EGITALHNAVCAGHTEIVKFLVQ   55 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS--------------------------CCCCCT-TSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC--------------------------cccccc-ccccccccccccccccccccccc
Confidence            689999999999999999999877                          666777 89999999999999999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         267 CAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       267 ~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +| ++++.+|.+|+||||+|+..|+.+.
T Consensus        56 ~g-~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1          56 FG-VNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HT-CCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             cc-cccccccccCcccccccchhhHHHH
Confidence            99 9999999999999999999999874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.8e-16  Score=142.36  Aligned_cols=124  Identities=18%  Similarity=0.102  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCChhHHhc-CCCccccCCCCCCcHHHHHHHc----CCHHHHHHHHhhcCCCC-----
Q psy4222         143 ELVKLRKLIEKGNLADVRKLVWDNPRYLVSS-GDFPTILHEGCRYNALHVSTKA----VNPAMTEMLLEIIGNPA-----  212 (367)
Q Consensus       143 ~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~-g~~~~~~~d~~G~TpLh~Aa~~----g~~~iv~~LL~~~~d~~-----  212 (367)
                      +.|+||.|+..|+.+.+        ++|++. |+++ ...+..|.++++.+...    +...++++|++.|++.+     
T Consensus       148 g~t~L~~A~~~~~~~~~--------~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~  218 (285)
T d1wdya_         148 GATALMDAAEKGHVEVL--------KILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER  218 (285)
T ss_dssp             CCCHHHHHHHHTCHHHH--------HHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT
T ss_pred             CchHHHHHHHcCCHHHH--------HHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCC
Confidence            35689999999999999        666643 5555 56677777777665543    33467888888877533     


Q ss_pred             CcccccccCCCChHHHHHHHHhc-CCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q psy4222         213 FTNLLYDSDTPSYIERSDILLDL-YVNT--PDKALNETPLHFAAKFGSVECVKRLIGCAKIQTSVRNK  277 (367)
Q Consensus       213 ~~~~~~~~~~~~~~~~v~~Ll~~-~~n~--~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g~ad~~~~n~  277 (367)
                      ...+++.++..++.+++++|++. |+++  .|. .|.||||+|+++|+.++|++||++| ||+|++|.
T Consensus       219 g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~-~G~TpL~~A~~~~~~eiv~~Ll~~G-Ad~n~~d~  284 (285)
T d1wdya_         219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS-DGKTALLLAVELKLKKIAELLCKRG-ASTDCGDL  284 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred             CCCccchhhhcCcHHHHHHHHHcCCCCCcCCCC-CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcccC
Confidence            34556666677788888888864 5555  466 8999999999999999999999999 99999884

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.3e-16  Score=127.08  Aligned_cols=119  Identities=17%  Similarity=0.147  Sum_probs=100.4

Q ss_pred             CChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CC
Q psy4222         139 LKSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AF  213 (367)
Q Consensus       139 ~~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~  213 (367)
                      .+..+.||||.|+ .|+.+++        ++|++.|+++ ..++..|.++|+.++..++..+++.|+..+.+.     ..
T Consensus        30 ~d~~g~TpL~~A~-~~~~ei~--------~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   99 (156)
T d1ihba_          30 QNGFGRTALQVMK-LGNPEIA--------RRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG   99 (156)
T ss_dssp             CCTTSCCHHHHCC-SSCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCcccccccccc-ccccccc--------cccccccccc-ccccccCccccccccccccccccccccccccccccccccc
Confidence            3456779999876 7999999        9999999988 577888999999999999999999999987653     33


Q ss_pred             cccccccCCCChHHHHHHHHhcCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy4222         214 TNLLYDSDTPSYIERSDILLDLYV---NTPDKALNETPLHFAAKFGSVECVKRLIGCA  268 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~Ll~~~~---n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~g  268 (367)
                      ..+++.+...+..+++++|++++.   +..+. .|+||||+|++.|+.++|++|+++|
T Consensus       100 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~-~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         100 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            445555667888999999998863   34466 8999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.5e-16  Score=128.01  Aligned_cols=117  Identities=16%  Similarity=0.102  Sum_probs=88.5

Q ss_pred             ChhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCC-----CCc
Q psy4222         140 KSQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNP-----AFT  214 (367)
Q Consensus       140 ~~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~-----~~~  214 (367)
                      +..+.||||.|+ .|+.+.+        ++|+..+.++ +..+..|.+||++|+..++.++++++++.+.+.     ...
T Consensus        33 d~~g~t~L~~A~-~~~~~~v--------~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~  102 (156)
T d1bd8a_          33 NRFGKTALQVMM-FGSTAIA--------LELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA  102 (156)
T ss_dssp             CTTSCCHHHHSC-TTCHHHH--------HHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred             CCCCCccccccc-ccccccc--------cccccccccc-cccccccccccccccccccccccccccccccccccccCCCC
Confidence            345567888776 4777777        7777777776 466677888888888888888888888877642     345


Q ss_pred             ccccccCCCChHHHHHHHHhc-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy4222         215 NLLYDSDTPSYIERSDILLDL-YVNTPDKALNETPLHFAAKFGSVECVKRLIGC  267 (367)
Q Consensus       215 ~~~~~~~~~~~~~~v~~Ll~~-~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~  267 (367)
                      .+++.++..++.+++++|+.. .++..+. .|+||||+|+.+|+.++|++|+++
T Consensus       103 t~L~~A~~~~~~~i~~~L~~~~~~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         103 LPIHLAVQEGHTAVVSFLAAESDLHRRDA-RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTSCTTCCCT-TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             eeeccccccccccccccccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHhh
Confidence            555666667778888877732 2555577 999999999999999999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=3e-15  Score=123.55  Aligned_cols=114  Identities=14%  Similarity=0.119  Sum_probs=82.7

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCC-----CCCcc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGN-----PAFTN  215 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d-----~~~~~  215 (367)
                      ..+.||||+|+..++.+.+        .+++...... ...+..+.+++|+++...+.+++++|+..+.+     .....
T Consensus        32 ~~g~t~L~~a~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T  102 (153)
T d1awcb_          32 WLGTSPLHLAAQYGHFSTT--------EVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT  102 (153)
T ss_dssp             TTCCCHHHHHHHHTCHHHH--------HHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred             cCCCccccccccccccccc--------cccccccccc-cccccccccccccccccccceeeecccccCCccccccccCch
Confidence            4456889999999999888        4444444333 23455566777777777777777777777654     23444


Q ss_pred             cccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCCHHHHHHH
Q psy4222         216 LLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGSVECVKRL  264 (367)
Q Consensus       216 ~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~~~vv~~L  264 (367)
                      +++.++..++.+++++|++.|+++.  |+ .|.||||+|+.+|+.++|++|
T Consensus       103 ~L~~A~~~g~~~iv~~ll~~gad~~~~d~-~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         103 ALHWATEHNHQEVVELLIKYGADVHTQSK-FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHhhhhcchhheeeeccccccCCcccCC-CCCCHHHHHHHcCCHHHHHhC
Confidence            5566666777777777777776554  66 899999999999999999977

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.6e-16  Score=124.91  Aligned_cols=90  Identities=13%  Similarity=0.154  Sum_probs=76.3

Q ss_pred             hhhHHHHHHHHHcCCHHHHHHHHhcCChhHHhcCCCccccCCCCCC-cHHHHHHHcCCHHHHHHHHhhcCCCCCcccccc
Q psy4222         141 SQELVKLRKLIEKGNLADVRKLVWDNPRYLVSSGDFPTILHEGCRY-NALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYD  219 (367)
Q Consensus       141 ~~~lt~L~~A~~~G~~~~v~~ll~~~p~~Ll~~g~~~~~~~d~~G~-TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~  219 (367)
                      ..+.|+||.| ..|+.+++        ++|++.|+++ +.++..|. ||||+|++.|+.+++++|++.|++         
T Consensus        34 ~~g~t~l~~a-~~g~~~~v--------~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~---------   94 (125)
T d1bi7b_          34 SYGRRPIQVM-MMGSARVA--------ELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR---------   94 (125)
T ss_dssp             SSSCCTTTSS-CTTCHHHH--------HHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC---------
T ss_pred             cccccccccc-cccccccc--------cccccccccc-ccccccccccccccccccccccccccccccccc---------
Confidence            3445677765 47999999        9999999988 46666655 799999999999999999999877         


Q ss_pred             cCCCChHHHHHHHHhcCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy4222         220 SDTPSYIERSDILLDLYVNTPDKALNETPLHFAAKFGSVECVKRLIGC  267 (367)
Q Consensus       220 ~~~~~~~~~v~~Ll~~~~n~~d~~~g~TpLH~Aa~~g~~~vv~~LL~~  267 (367)
                                       ++..|. .|+||||+|+++|+.++|++|++.
T Consensus        95 -----------------~~~~d~-~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          95 -----------------LDVRDA-WGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             -----------------SSCCCT-TCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             -----------------cccccC-CCCCHHHHHHHcCCHHHHHHHHhc
Confidence                             566777 999999999999999999999863

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.8e-14  Score=119.32  Aligned_cols=85  Identities=16%  Similarity=0.166  Sum_probs=73.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhcCCCCCcccccccCCCChHHHHHHHHhcC--CCCCCCCCCCcHHHHHHHcCCHHHH
Q psy4222         184 CRYNALHVSTKAVNPAMTEMLLEIIGNPAFTNLLYDSDTPSYIERSDILLDLY--VNTPDKALNETPLHFAAKFGSVECV  261 (367)
Q Consensus       184 ~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~~~~~~~~~~~~~~~~~v~~Ll~~~--~n~~d~~~g~TpLH~Aa~~g~~~vv  261 (367)
                      +|+||||+||..|+.++++.|++.                        +.+.|  ++..+. .|+||||+||..|+.++|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~------------------------~~~~g~~in~~d~-~g~TpL~~A~~~~~~~iv   56 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNL------------------------FQQGGRELDIYNN-LRQTPLHLAVITTLPSVV   56 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHH------------------------HHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHH------------------------HHHCCCCCCccCC-CCCccceehhcccccccc
Confidence            589999999999999999999863                        23333  555676 899999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCChHHHHHhcCCcHHH
Q psy4222         262 KRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       262 ~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      ++|+++| ++.+..+..|.++++.|...+..+.
T Consensus        57 ~~Ll~~g-a~~~~~~~~~~~~~~~a~~~~~~~~   88 (228)
T d1k1aa_          57 RLLVTAG-ASPMALDRHGQTAAHLACEHRSPTC   88 (228)
T ss_dssp             HHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccccc-ccccccccccccccccccccccccc
Confidence            9999999 9999999999999999998777653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.4e-12  Score=119.99  Aligned_cols=121  Identities=16%  Similarity=0.088  Sum_probs=83.1

Q ss_pred             hcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhhcCCCC-----CcccccccCCCC-------hHHHHHHHHhcCCCC
Q psy4222         172 SSGDFPTILHEGCRYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLYDSDTPS-------YIERSDILLDLYVNT  239 (367)
Q Consensus       172 ~~g~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~~~~~~~-------~~~~v~~Ll~~~~n~  239 (367)
                      ..+.++....|..|+||||+||..|+.++|++||+.|++..     ...+++.++..+       ..++++++... ++.
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~-~~~  172 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC-LIL  172 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG-GGE
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh-hhh
Confidence            34555532338889999999999999999999999998743     333444443322       23455555432 444


Q ss_pred             CCCCCCCcHHHHHHHcCC----HH--------HHHHHHhCCCC------------------------------------C
Q psy4222         240 PDKALNETPLHFAAKFGS----VE--------CVKRLIGCAKI------------------------------------Q  271 (367)
Q Consensus       240 ~d~~~g~TpLH~Aa~~g~----~~--------vv~~LL~~g~a------------------------------------d  271 (367)
                      .|. .|+||||+|+..+.    ..        ++.+++..+..                                    .
T Consensus       173 ~d~-~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         173 EDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             ECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             ccc-ccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            566 79999999987654    22        33444444311                                    1


Q ss_pred             CCCCCCCCChHHHHHhcCCcHHH
Q psy4222         272 TSVRNKEGKTPLDSSSGLDLLEN  294 (367)
Q Consensus       272 ~~~~n~~G~TPL~iA~~~g~~~~  294 (367)
                      +|.+|.+|+||||+|++.|+.+.
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~i  274 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISI  274 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHH
Confidence            68899999999999999999874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.32  E-value=1.2e-12  Score=118.66  Aligned_cols=107  Identities=21%  Similarity=0.181  Sum_probs=94.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhcCCCC-----CcccccccCCCChHHHHHHHHhcCCCCC--CCCCCCcHHHHHHHcCC
Q psy4222         185 RYNALHVSTKAVNPAMTEMLLEIIGNPA-----FTNLLYDSDTPSYIERSDILLDLYVNTP--DKALNETPLHFAAKFGS  257 (367)
Q Consensus       185 G~TpLh~Aa~~g~~~iv~~LL~~~~d~~-----~~~~~~~~~~~~~~~~v~~Ll~~~~n~~--d~~~g~TpLH~Aa~~g~  257 (367)
                      |.|+||+||..|+.++|++||+.|+|.+     ...+++.+...++.+++++|++.+.+..  +. .+.||||+|+..|+
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~-~~~~~L~~a~~~~~  118 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTC
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccc-cccccccccccccc
Confidence            5699999999999999999999998643     4567778888999999999999987655  44 78999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCChHHHHHhcCCcHH
Q psy4222         258 VECVKRLIGCAKIQTSVRNKEGKTPLDSSSGLDLLE  293 (367)
Q Consensus       258 ~~vv~~LL~~g~ad~~~~n~~G~TPL~iA~~~g~~~  293 (367)
                      .++++.|+++| +..+..|..|.+|+++|+..+..+
T Consensus       119 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~~  153 (291)
T d1s70b_         119 LDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEE  153 (291)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHCCSHHHHH
T ss_pred             cchhhcccccC-cccccccccCccccccccccccch
Confidence            99999999999 899999999999999998776654

>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: N-terminal domain of RNase HI
domain: N-terminal domain of RNase HI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=2.5e-09  Score=69.59  Aligned_cols=45  Identities=16%  Similarity=0.293  Sum_probs=41.8

Q ss_pred             cceEEecccccCCCCCCccCccccccccHHHHHHHHHHcccccccCCCCHHHHHHHH
Q psy4222          36 IYFAVYIPSELLGGYENEFSECERVFDNKEEALLFIKKNKKIRFKSFRNFQDAQNFA   92 (367)
Q Consensus        36 ~~y~v~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~k~~k~ar~k~F~~~~~a~~~~   92 (367)
                      .||+|+.+            .+++||++|.||+..++..+++++|+|.+.+||++|+
T Consensus         2 kyYaV~~G------------~~~GIy~~W~e~~~~V~g~~ga~~k~F~t~~eA~~~l   46 (47)
T d1qhka_           2 NFYAVRKG------------RETGIYNTWNECKNQVDGYGGAIYKKFNSYEQAKSFL   46 (47)
T ss_dssp             EEEEECSS------------SSCEEEEEHHHHHHHSSSCSSCCCEEESCHHHHHHHH
T ss_pred             CeEEEEEC------------CCCCccCCHHHHHHHhcCCCCCeECCcCCHHHHHHhh
Confidence            59999998            3569999999999999999999999999999999986