Psyllid ID: psy4236

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MNTSGTYLIHVGLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHccccHHHHHHHccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHccccHHHHHHHcccccHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHcc
Coil and Loop (DISEMBL)
MNTSGTYLihvglpsskhYLDIINILEKTSEGVLKAARVGDIKMLKDLHsqgyslkkippkddhpnlnhfFFQLKDLhsqgysllsiDSVGQTAlhygsryghkDVVKYIIACapssilnmqdndkGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAggasltvkdydsntpRALALLANDTELAAYLEKS
Flexible Loop (DISEMBL)
MNTSGTYLIHVGLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS
Low Complexity Region (SEG)
MNTSGTYLIHVGLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS
Disordered region (IsUnstruct)
*****TYLIHVGLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKK******HPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA******
Disordered Region (DISOPRED)
MNTSGTYLIHVGLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS
Disordered Region (DISEMBL)
MNTSGTYLIHVGLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS
Disordered Region (DISPRO)
****GTYLIHVGLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTSGTYLIHVGLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q09103	1457	Eye-specific diacylglycer	yes	N/A	0.610	0.087	0.379	1e-23
O08560	929	Diacylglycerol kinase zet	yes	N/A	0.586	0.131	0.333	1e-14
Q80UP3	929	Diacylglycerol kinase zet	yes	N/A	0.514	0.115	0.350	2e-14
Q13574	1117	Diacylglycerol kinase zet	no	N/A	0.586	0.109	0.352	3e-14
O75912	1065	Diacylglycerol kinase iot	no	N/A	0.528	0.103	0.338	2e-12
Q9Y2G4	727	Ankyrin repeat domain-con	no	N/A	0.923	0.264	0.273	4e-08
Q69ZU8	712	Ankyrin repeat domain-con	no	N/A	0.923	0.269	0.273	5e-08
Q54KA7	986	Ankyrin repeat, PH and SE	no	N/A	0.730	0.154	0.277	1e-07
Q5ZLC8	1073	Serine/threonine-protein	no	N/A	0.812	0.157	0.266	3e-07
Q94B55	456	Putative E3 ubiquitin-pro	no	N/A	0.567	0.258	0.331	6e-07

>sp|Q09103|DGK2_DROME Eye-specific diacylglycerol kinase OS=Drosophila melanogaster GN=rdgA PE=2 SV=2

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 86/182 (47%), Gaps = 55/182 (30%)

Query: 25   ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSL 84
            ILE+TS+ +L AA+ GD+ ML+ LH Q                             GYSL
Sbjct: 1317 ILEQTSDAILLAAQSGDLNMLRALHEQ-----------------------------GYSL 1347

Query: 85   LSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICW 144
             S++  GQTALH+  +Y H+D+VKYIIA A   ++NM D + GQTALH AA   R     
Sbjct: 1348 QSVNKNGQTALHFACKYNHRDIVKYIIASATRRLINMADKELGQTALHIAAEQNR----- 1402

Query: 145  MFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAY 204
                                 R IC MLVA GA L   D   NTP  +A   N  E+A Y
Sbjct: 1403 ---------------------RDICVMLVAAGAHLDTLDSGGNTPMMVAFNKNANEIATY 1441

Query: 205  LE 206
            LE
Sbjct: 1442 LE 1443

Required for the maintenance of phospholipid turnover within the photoreceptor.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 0EC: 7

>sp|O08560|DGKZ_RAT Diacylglycerol kinase zeta OS=Rattus norvegicus GN=Dgkz PE=2 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 34/156 (21%)

Query: 51  QGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYI 110
           QG  L +   ++D       F +L++LH  G  L+  D   +T LH+    G K+VV+Y+
Sbjct: 791 QGEELIEAAKRND-------FCKLQELHRAGGDLMHRDHQSRTLLHHAVSTGSKEVVRYL 843

Query: 111 IACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICC 170
           +  AP  IL+  + +                           G+T LH+AA   +R+IC 
Sbjct: 844 LDHAPPEILDAVEEN---------------------------GETCLHQAAALGQRTICH 876

Query: 171 MLVAGGASLTVKDYDSNTPRALALLANDTELAAYLE 206
            +V  GASL   D   +TPR  A  A DTELAAYLE
Sbjct: 877 YIVEAGASLMKTDQQGDTPRQRAEKAQDTELAAYLE 912

Displays a strong preference for 1,2-diacylglycerols over 1,3-diacylglycerols, but lacks substrate specificity among molecular species of long chain diacylglycerols. Regulates RASGRP1 activity.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 7

>sp|Q80UP3|DGKZ_MOUSE Diacylglycerol kinase zeta OS=Mus musculus GN=Dgkz PE=1 SV=2

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 27/134 (20%)

Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           +L++LH  G  L+  D   +T LH+    G K+VV+Y++  AP  IL+  + +       
Sbjct: 806 KLQELHRAGGDLMHRDQKSRTLLHHAVSTGSKEVVRYLLDHAPPEILDAVEEN------- 858

Query: 133 KAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRAL 192
                               G+T LH+AA   +R+IC  +V  GASL   D   +TPR  
Sbjct: 859 --------------------GETCLHQAAALGQRTICHYIVEAGASLMKTDLQGDTPRQR 898

Query: 193 ALLANDTELAAYLE 206
           A  A DTELAAYLE
Sbjct: 899 AEKAQDTELAAYLE 912

Displays a strong preference for 1,2-diacylglycerols over 1,3-diacylglycerols, but lacks substrate specificity among molecular species of long chain diacylglycerols. Regulates RASGRP1 activity.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 7

>sp|Q13574|DGKZ_HUMAN Diacylglycerol kinase zeta OS=Homo sapiens GN=DGKZ PE=1 SV=3

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 75/156 (48%), Gaps = 34/156 (21%)

Query: 51   QGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYI 110
            QG  L +   ++D       F +L++LH  G  L+  D   +T LH+    G KDVV+Y+
Sbjct: 979  QGEELIEAAKRND-------FCKLQELHRAGGDLMHRDEQSRTLLHHAVSTGSKDVVRYL 1031

Query: 111  IACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICC 170
            +  AP  IL+  + + G+T LH+AA                 GQ           R+IC 
Sbjct: 1032 LDHAPPEILDAVE-ENGETCLHQAAAL---------------GQ-----------RTICH 1064

Query: 171  MLVAGGASLTVKDYDSNTPRALALLANDTELAAYLE 206
             +V  GASL   D   +TPR  A  A DTELAAYLE
Sbjct: 1065 YIVEAGASLMKTDQQGDTPRQRAEKAQDTELAAYLE 1100

Displays a strong preference for 1,2-diacylglycerols over 1,3-diacylglycerols, but lacks substrate specificity among molecular species of long chain diacylglycerols. Isoform 2 but not isoform 1 regulates RASGRP1 activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 7

>sp|O75912|DGKI_HUMAN Diacylglycerol kinase iota OS=Homo sapiens GN=DGKI PE=1 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 26/136 (19%)

Query: 71   FFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTA 130
              +L + +  G SLL       + LHY ++ G+ ++VKYI+   PS +L+M D++ G+TA
Sbjct: 939  LMKLIESYKNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADSETGETA 998

Query: 131  LHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPR 190
            LHKAA  + R++C                           +LV  GASL   D    TP+
Sbjct: 999  LHKAACQRNRAVCQ--------------------------LLVDAGASLRKTDSKGKTPQ 1032

Query: 191  ALALLANDTELAAYLE 206
              A  A D +LAAYLE
Sbjct: 1033 ERAQQAGDPDLAAYLE 1048

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 7

>sp|Q9Y2G4|ANKR6_HUMAN Ankyrin repeat domain-containing protein 6 OS=Homo sapiens GN=ANKRD6 PE=1 SV=3

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 27/219 (12%)

Query: 13  LPSSKHYLDIINILEKT-----------SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPK 61
           L ++K +L ++ IL K               + +A  VG+ +++  L  +G +L +   K
Sbjct: 48  LAANKGHLPVVQILLKAGCDLDVQDDGDQTALHRATVVGNTEIIAALIHEGCALDR-QDK 106

Query: 62  DDHPNLN----HFFFQ-LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPS 116
           D +  L+    H F Q  K L   G ++L+ +  G TALH   +  H    + ++     
Sbjct: 107 DGNTALHEASWHGFSQSAKLLIKAGANVLAKNKAGNTALHLACQNSHSQSTRVLLLAGSR 166

Query: 117 SILNMQDNDKGQTALHKAAMFKRRSICWMFL--FFS-----SRGQTALHKAAMFKRRSIC 169
           + L    N+ G T LH AA +   SI  + L  F S       G TALH AA    + + 
Sbjct: 167 ADLK---NNAGDTCLHVAARYNHLSIIRLLLTAFCSVHEKNQAGDTALHVAAALNHKKVA 223

Query: 170 CMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
            +L+  GA  T+ +    TP   A   N+ E+A  L K+
Sbjct: 224 KILLEAGADTTIVNNAGQTPLETARYHNNPEVALLLTKA 262

Recruits CKI-epsilon to the beta-catenin degradation complex that consists of AXN1 or AXN2 and GSK3-beta and allows efficient phosphorylation of beta-catenin, thereby inhibiting beta-catenin/Tcf signals.

Homo sapiens (taxid: 9606)

>sp|Q69ZU8|ANKR6_MOUSE Ankyrin repeat domain-containing protein 6 OS=Mus musculus GN=Ankrd6 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 27/219 (12%)

Query: 13  LPSSKHYLDIINILEKT-----------SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPK 61
           L ++K +L ++ IL K               + +A  VG+ ++L  L  +G +L +   K
Sbjct: 48  LAANKGHLSVVQILLKAGCDLDVQDDGDQTALHRATVVGNTEILTALIREGCALDR-QDK 106

Query: 62  DDHPNLN----HFFFQ-LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPS 116
           D +  L+    H F Q  K L   G ++L+ +  G TALH   +  H    + ++     
Sbjct: 107 DGNTALHEAAWHGFSQSAKLLVKAGANVLARNKAGNTALHLACQNSHSQSTRILLLGGSR 166

Query: 117 SILNMQDNDKGQTALHKAAMFKRRSICWMFL--FFS-----SRGQTALHKAAMFKRRSIC 169
           + L    N+ G T LH AA +   S+  + L  F S       G TALH AA    + + 
Sbjct: 167 ADLK---NNAGDTCLHVAARYNHLSVVRLLLNAFCSVHEKNQAGDTALHVAAALNHKKVV 223

Query: 170 CMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
            +L+  GA  T+ +    TP   A   N+ E+A  L K+
Sbjct: 224 KVLLEAGADTTIVNNAGQTPLETARYHNNPEVALLLTKA 262

Recruits CKI-epsilon to the beta-catenin degradation complex that consists of AXN1 or AXN2 and GSK3-beta and allows efficient phosphorylation of beta-catenin, thereby inhibiting beta-catenin/Tcf signals.

Mus musculus (taxid: 10090)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 46/198 (23%)

Query: 36  AARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQ-----LKDLHSQGYSLLSIDSV 90
           AA  G +  ++ L   G ++  +  +   P L+H  F       K L   G  +  +D +
Sbjct: 242 AASAGYVDCVEQLVRNGENINCVDIEGVTP-LHHTCFNGNLQLTKRLIELGAKINMVDEM 300

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSI-------------------LNMQD-------- 123
           G+T LH  +  GHK+V +Y++   P+ I                   L+M D        
Sbjct: 301 GETPLHKAAFNGHKEVCEYLLYLDPTMIDCRDSRQSTSLHLAAFNGLLDMVDLLIRYKAQ 360

Query: 124 ----NDKGQTALHKAAMFKRRSICWMFL--------FFSSRGQTALHKAAMFKRRSICCM 171
               +++G T LHKA+ F   S C   L           S+G T LHKAA   R      
Sbjct: 361 INIKDEEGATPLHKAS-FNGHSSCAKLLVDKGAPICIVDSQGATPLHKAAFNGRSKCLAT 419

Query: 172 LVAGGASLTVKDYDSNTP 189
           L+  GA L VKD    TP
Sbjct: 420 LIRSGAELEVKDSQGGTP 437

Dictyostelium discoideum (taxid: 44689)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 45/214 (21%)

Query: 20  LDIINILEKTSEGVLK-AARVGDIKMLKDLHSQGYSLKKIPPKDDHPN-----LNHFFFQ 73
           L  +N+ ++T    L  A   G ++M+  L ++G SL     KD  P      L H    
Sbjct: 130 LSTVNVADRTGRTALHHAVHSGHLEMVNLLLNKGASLSTCDKKDRQPIHWAAFLGHLEV- 188

Query: 74  LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYI-------------------IAC- 113
           LK L ++G  ++  D  G T LH  +  G  +VV+++                   IAC 
Sbjct: 189 LKLLVARGADVMCKDKKGYTLLHTAAASGQIEVVRHLLRLGVEIDEPNSFGNTALHIACY 248

Query: 114 -----APSSILNM-----QDNDKGQTALHKAAMFKRRSICWMFL--------FFSSRGQT 155
                  + ++N      Q N+KG T LH AA+    ++C   L        F S  G++
Sbjct: 249 MGQDAVANELVNYGANVNQPNEKGFTPLHFAAVSTNGALCLELLVNNGADVNFQSKEGKS 308

Query: 156 ALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
            LH AA+  R +   +L+  G+ +   D   NTP
Sbjct: 309 PLHMAAIHGRFTRSQILIQNGSEIDCADKYGNTP 342

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q94B55|XB31_ARATH Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 27/145 (18%)

Query: 74  LKDLHSQGYSLLSIDSVGQ-TALHYGSRYGHKDVVKYIIACAPSS----------ILNMQ 122
           +K L   G ++L  DSV + T LHY + YGH + V+ I++ A SS           +N++
Sbjct: 95  VKKLAEVGANILMFDSVNRRTCLHYAAYYGHANCVQAILSAAQSSPVAVHWGYARFVNIR 154

Query: 123 DNDKGQTALHKAAMFKRRS-----------ICWMFLFFSSRGQTALHKAAMFKRRSICCM 171
           D DKG T LH AA  +R             +C     + S G T LH AA  +  SI C+
Sbjct: 155 D-DKGATPLHLAARQRRPECVNVLLDSGSLVCASTSVYGSPGSTPLHLAA--RSGSIDCV 211

Query: 172 --LVAGGASLTVKDYDSNTPRALAL 194
             L+A GA    +D     P  +A+
Sbjct: 212 RKLLAWGADRLQRDASGRIPYVVAM 236

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
383852525	1315	PREDICTED: eye-specific diacylglycerol k	0.663	0.104	0.5	2e-42
350398827	1353	PREDICTED: eye-specific diacylglycerol k	0.663	0.101	0.5	2e-41
340714871	1339	PREDICTED: eye-specific diacylglycerol k	0.663	0.103	0.5	2e-40
328776199	1347	PREDICTED: eye-specific diacylglycerol k	0.663	0.102	0.489	2e-40
380011334	982	PREDICTED: eye-specific diacylglycerol k	0.663	0.140	0.489	2e-40
345487481	1382	PREDICTED: eye-specific diacylglycerol k	0.663	0.099	0.494	2e-40
357623425	979	hypothetical protein KGM_11553 [Danaus p	0.615	0.130	0.502	1e-37
307168937	1313	Eye-specific diacylglycerol kinase [Camp	0.615	0.097	0.475	1e-36
307193354	1262	Eye-specific diacylglycerol kinase [Harp	0.663	0.109	0.479	1e-36
347963969	1506	AGAP000519-PA [Anopheles gambiae str. PE	0.615	0.084	0.459	8e-33

>gi|383852525|ref|XP_003701777.1| PREDICTED: eye-specific diacylglycerol kinase-like [Megachile rotundata]

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/194 (50%), Positives = 116/194 (59%), Gaps = 56/194 (28%)

Query: 12   GLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFF 71
            GL S  H  +   +LEKTS+G+LKAA+VG+++                            
Sbjct: 1161 GLSSEVHTFNT-RLLEKTSDGILKAAKVGNLQ---------------------------- 1191

Query: 72   FQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTAL 131
              LK+LH +GYSLL ID+ GQTALH  SRYGHKD+V+Y+IACAPSSILNM DNDKGQTAL
Sbjct: 1192 -ALKELHDKGYSLLCIDATGQTALHLASRYGHKDIVRYLIACAPSSILNMIDNDKGQTAL 1250

Query: 132  HKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRA 191
            HKAA +KR                          RS+CCMLVAGGA+L++KD   NTPR 
Sbjct: 1251 HKAAQYKR--------------------------RSVCCMLVAGGATLSIKDRQGNTPRD 1284

Query: 192  LALLANDTELAAYL 205
            LAL A D ELAAYL
Sbjct: 1285 LALQAEDRELAAYL 1298

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398827|ref|XP_003485316.1| PREDICTED: eye-specific diacylglycerol kinase-like [Bombus impatiens]

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 97/194 (50%), Positives = 113/194 (58%), Gaps = 56/194 (28%)

Query: 12   GLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFF 71
            GL S  H      +LEK S+G+LKAA++GD++                            
Sbjct: 1199 GLSSEVHTFHT-RLLEKASDGILKAAKIGDLQ---------------------------- 1229

Query: 72   FQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTAL 131
              LK+ H +GYSLLSIDS GQTALH  SRYGHKD+V+Y+IACAPSSILNM DNDKGQTAL
Sbjct: 1230 -ALKEFHEKGYSLLSIDSSGQTALHLASRYGHKDIVRYLIACAPSSILNMIDNDKGQTAL 1288

Query: 132  HKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRA 191
            HKAA +KRR                          SICCMLVAGGA+L +KD   NTPR 
Sbjct: 1289 HKAAQYKRR--------------------------SICCMLVAGGATLIIKDRHGNTPRD 1322

Query: 192  LALLANDTELAAYL 205
            LAL A D +LAAYL
Sbjct: 1323 LALQAEDRDLAAYL 1336

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714871|ref|XP_003395946.1| PREDICTED: eye-specific diacylglycerol kinase-like [Bombus terrestris]

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/194 (50%), Positives = 113/194 (58%), Gaps = 56/194 (28%)

Query: 12   GLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFF 71
            GL S  H      +LEK S+G+LKAA++GD++ LK+ H +                    
Sbjct: 1185 GLSSEVHTFHT-RLLEKASDGILKAAKIGDLQALKEFHEK-------------------- 1223

Query: 72   FQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTAL 131
                     GYSLLSIDS GQTALH  SRYGHKD+V+Y+IACAPSSILNM DNDKGQTAL
Sbjct: 1224 ---------GYSLLSIDSSGQTALHLASRYGHKDIVRYLIACAPSSILNMIDNDKGQTAL 1274

Query: 132  HKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRA 191
            HKAA +KRR                          SICCMLVAGGA+L +KD   NTPR 
Sbjct: 1275 HKAAQYKRR--------------------------SICCMLVAGGATLIIKDRHGNTPRD 1308

Query: 192  LALLANDTELAAYL 205
            LAL A D +LAAYL
Sbjct: 1309 LALQAEDRDLAAYL 1322

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776199|ref|XP_396522.3| PREDICTED: eye-specific diacylglycerol kinase [Apis mellifera]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 115/194 (59%), Gaps = 56/194 (28%)

Query: 12   GLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFF 71
            GL S  H  +   +LEKTS+G+LKAA++GD++ LK+LH +                    
Sbjct: 1193 GLSSEVHTFNT-GLLEKTSDGILKAAKIGDLQALKELHEK-------------------- 1231

Query: 72   FQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTAL 131
                     GYSLLSIDS GQTALH  SRYGHK++V+Y+IACAP +ILNM DNDKGQTAL
Sbjct: 1232 ---------GYSLLSIDSTGQTALHLASRYGHKNIVRYLIACAPPTILNMIDNDKGQTAL 1282

Query: 132  HKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRA 191
            HKAA +KRR                          SICCMLVAGGA+L +KD   N+PR 
Sbjct: 1283 HKAAQYKRR--------------------------SICCMLVAGGATLIIKDRHGNSPRD 1316

Query: 192  LALLANDTELAAYL 205
            LAL A D +LAAYL
Sbjct: 1317 LALQAEDRDLAAYL 1330

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011334|ref|XP_003689763.1| PREDICTED: eye-specific diacylglycerol kinase-like [Apis florea]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 115/194 (59%), Gaps = 56/194 (28%)

Query: 12  GLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFF 71
           GL S  H  +   +LEKTS+G+LKAA++GD++ LK+LH +                    
Sbjct: 828 GLSSEVHTFNT-GLLEKTSDGILKAAKIGDLQALKELHEK-------------------- 866

Query: 72  FQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTAL 131
                    GYSLLSIDS GQTALH  SRYGHK++++Y+IACAP +ILNM DNDKGQTAL
Sbjct: 867 ---------GYSLLSIDSTGQTALHLASRYGHKNIIRYLIACAPPTILNMIDNDKGQTAL 917

Query: 132 HKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRA 191
           HKAA +KRR                          SICCMLVAGGA+L +KD   NTPR 
Sbjct: 918 HKAAQYKRR--------------------------SICCMLVAGGATLIIKDRHGNTPRD 951

Query: 192 LALLANDTELAAYL 205
           LAL A D +LAAYL
Sbjct: 952 LALQAEDRDLAAYL 965

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487481|ref|XP_001604264.2| PREDICTED: eye-specific diacylglycerol kinase-like [Nasonia vitripennis]

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/194 (49%), Positives = 113/194 (58%), Gaps = 56/194 (28%)

Query: 12   GLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFF 71
            GL S  H      +LEKTS+G+L+AA+VGD+                             
Sbjct: 1228 GLSSEVHTFST-ELLEKTSDGILRAAKVGDLP---------------------------- 1258

Query: 72   FQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTAL 131
              LK+LH +GYSLLSIDS GQTALH  SR GH+D+V+Y+IACAP +ILNM DNDKGQTAL
Sbjct: 1259 -ALKELHERGYSLLSIDSTGQTALHLASRLGHRDIVRYLIACAPPTILNMVDNDKGQTAL 1317

Query: 132  HKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRA 191
            HKAA  KRR                          SICCMLVAGGA LTV+D + +TPR 
Sbjct: 1318 HKAAQQKRR--------------------------SICCMLVAGGAKLTVRDRNGSTPRE 1351

Query: 192  LALLANDTELAAYL 205
            LAL+A D ELAAYL
Sbjct: 1352 LALIAEDRELAAYL 1365

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623425|gb|EHJ74580.1| hypothetical protein KGM_11553 [Danaus plexippus]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 113/183 (61%), Gaps = 55/183 (30%)

Query: 24  NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYS 83
           N+LEKTS+ +LKAA+VGD+KMLK+LH                             S GYS
Sbjct: 836 NLLEKTSDTLLKAAKVGDLKMLKELH-----------------------------SAGYS 866

Query: 84  LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC 143
           LLSIDS GQTALH  +RYG+K++VKY+IA AP++ILNM+DN++GQTALHKAA  KR    
Sbjct: 867 LLSIDSTGQTALHIATRYGNKEIVKYLIASAPTAILNMRDNERGQTALHKAAAHKR---- 922

Query: 144 WMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAA 203
                                 R+ICCMLVAGGASLT +D+   TPR LAL A+D +LAA
Sbjct: 923 ----------------------RAICCMLVAGGASLTQQDHTGLTPRHLALRADDHDLAA 960

Query: 204 YLE 206
           YLE
Sbjct: 961 YLE 963

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168937|gb|EFN61823.1| Eye-specific diacylglycerol kinase [Camponotus floridanus]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 106/183 (57%), Gaps = 55/183 (30%)

Query: 24   NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYS 83
             +LEK+ + +L+AA++GD+  LK LH +                             GYS
Sbjct: 1170 ELLEKSCDDILRAAKIGDLPTLKQLHQK-----------------------------GYS 1200

Query: 84   LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC 143
            LLSID  GQTALH  S++GHKD+V+Y+IACAP +ILNM DNDKGQTALHKAA +KRR   
Sbjct: 1201 LLSIDETGQTALHLASKHGHKDIVRYLIACAPPTILNMIDNDKGQTALHKAAQYKRR--- 1257

Query: 144  WMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAA 203
                                   SICCMLVAGGASL VKD   NTP  LAL+A D +LAA
Sbjct: 1258 -----------------------SICCMLVAGGASLIVKDRHGNTPHQLALIAEDHDLAA 1294

Query: 204  YLE 206
            YL+
Sbjct: 1295 YLQ 1297

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193354|gb|EFN76216.1| Eye-specific diacylglycerol kinase [Harpegnathos saltator]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 109/194 (56%), Gaps = 56/194 (28%)

Query: 12   GLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFF 71
            GL S  H      +LEKT +G+L AA++GD+                             
Sbjct: 1107 GLSSGVHRFST-GLLEKTCDGILTAAKLGDL----------------------------- 1136

Query: 72   FQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTAL 131
              LK LH QGYSLLSID+ GQTALH  S++GHK+VV+Y+IACAP +ILNM DNDKGQTAL
Sbjct: 1137 LALKQLHEQGYSLLSIDANGQTALHLASKHGHKEVVRYLIACAPPTILNMVDNDKGQTAL 1196

Query: 132  HKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRA 191
            HKAA  KRR                          SICCMLVAGGA+L VKD    TPR 
Sbjct: 1197 HKAAQNKRR--------------------------SICCMLVAGGAALMVKDRLGRTPRD 1230

Query: 192  LALLANDTELAAYL 205
            LAL+A D +LAAYL
Sbjct: 1231 LALIAEDCDLAAYL 1244

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963969|ref|XP_310575.5| AGAP000519-PA [Anopheles gambiae str. PEST] gi|333466950|gb|EAA06452.5| AGAP000519-PA [Anopheles gambiae str. PEST]

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 107/183 (58%), Gaps = 55/183 (30%)

Query: 24   NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYS 83
            N+LEKT++ V+KA++ GD+ MLKDL                             H QGYS
Sbjct: 1364 NLLEKTTDAVIKASKTGDLVMLKDL-----------------------------HLQGYS 1394

Query: 84   LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC 143
            LLSIDS GQTALH+G+R GHKD+V+Y+I+ AP+SI+NM DN+ GQTALHKAA  ++RSIC
Sbjct: 1395 LLSIDSTGQTALHHGARCGHKDIVRYLISYAPNSIINMIDNETGQTALHKAAAGRQRSIC 1454

Query: 144  WMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAA 203
            +                          MLVAGGA+L ++D D  T R LA  A+D ELA 
Sbjct: 1455 Y--------------------------MLVAGGANLNIQDNDGRTARMLASNADDFELAF 1488

Query: 204  YLE 206
            YLE
Sbjct: 1489 YLE 1491

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
FB|FBgn0261549	1457	rdgA "retinal degeneration A"	0.355	0.050	0.554	6.9e-16
UNIPROTKB|F1NX14	904	DGKZ "Uncharacterized protein"	0.413	0.095	0.420	6.9e-12
UNIPROTKB|F1NVK7	944	DGKZ "Uncharacterized protein"	0.413	0.091	0.420	7.3e-12
ZFIN|ZDB-GENE-111104-3	1122	dgkza "diacylglycerol kinase,	0.341	0.063	0.464	1.5e-11
UNIPROTKB|Q9Y2G4	727	ANKRD6 "Ankyrin repeat domain-	0.817	0.233	0.290	7e-10
MGI|MGI:2154278	712	Ankrd6 "ankyrin repeat domain	0.817	0.238	0.290	5.7e-09
UNIPROTKB|F1P1H5	921	DGKI "Uncharacterized protein"	0.615	0.138	0.387	1.6e-08
UNIPROTKB|J9P1Q1	757	DGKI "Uncharacterized protein"	0.490	0.134	0.336	1.8e-08
UNIPROTKB|E1C4S8	721	ANKRD6 "Uncharacterized protei	0.879	0.253	0.288	2.4e-08
UNIPROTKB|E2R4Q0	727	ANKRD6 "Uncharacterized protei	0.817	0.233	0.290	2.5e-08

FB|FBgn0261549 rdgA "retinal degeneration A" [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 6.9e-16, P = 6.9e-16
 Identities = 41/74 (55%), Positives = 52/74 (70%)

Query:    74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
             L+ LH QGYSL S++  GQTALH+  +Y H+D+VKYIIA A   ++NM D + GQTALH 
Sbjct:  1337 LRALHEQGYSLQSVNKNGQTALHFACKYNHRDIVKYIIASATRRLINMADKELGQTALHI 1396

Query:   134 AAMFKRRSICWMFL 147
             AA   RR IC M +
Sbjct:  1397 AAEQNRRDICVMLV 1410

GO:0004143 "diacylglycerol kinase activity" evidence=ISS;NAS;TAS

GO:0019992 "diacylglycerol binding" evidence=ISS;NAS

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=TAS

GO:0007602 "phototransduction" evidence=IMP;TAS

GO:0016056 "rhodopsin mediated signaling pathway" evidence=IMP

GO:0016059 "deactivation of rhodopsin mediated signaling" evidence=IGI

GO:0016310 "phosphorylation" evidence=NAS

GO:0046834 "lipid phosphorylation" evidence=TAS

GO:0006654 "phosphatidic acid biosynthetic process" evidence=TAS

GO:0045494 "photoreceptor cell maintenance" evidence=NAS;TAS

GO:0016020 "membrane" evidence=NAS

GO:0007601 "visual perception" evidence=NAS

GO:0007015 "actin filament organization" evidence=IMP

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0007608 "sensory perception of smell" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0043052 "thermotaxis" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=IMP

UNIPROTKB|F1NX14 DGKZ "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 6.9e-12, P = 6.9e-12
 Identities = 37/88 (42%), Positives = 53/88 (60%)

Query:    58 IPPKDD--HPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAP 115
             +P KDD         F + ++LH  G  L+  DS G+T LH+    G KD+VKYII  AP
Sbjct:   763 LPHKDDLIEAAKTGNFSKFQELHRAGRDLMVRDSSGRTVLHHAVVSGSKDIVKYIIENAP 822

Query:   116 SSILNMQDNDKGQTALHKAAMFKRRSIC 143
             S IL+  + + G+T+LH+AA  + R+IC
Sbjct:   823 SEILDATEEENGETSLHQAAALRHRTIC 850

GO:0004143 "diacylglycerol kinase activity" evidence=IEA

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|F1NVK7 DGKZ "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 7.3e-12, P = 7.3e-12
 Identities = 37/88 (42%), Positives = 53/88 (60%)

Query:    58 IPPKDD--HPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAP 115
             +P KDD         F + ++LH  G  L+  DS G+T LH+    G KD+VKYII  AP
Sbjct:   803 LPHKDDLIEAAKTGNFSKFQELHRAGRDLMVRDSSGRTVLHHAVVSGSKDIVKYIIENAP 862

Query:   116 SSILNMQDNDKGQTALHKAAMFKRRSIC 143
             S IL+  + + G+T+LH+AA  + R+IC
Sbjct:   863 SEILDATEEENGETSLHQAAALRHRTIC 890

GO:0004143 "diacylglycerol kinase activity" evidence=IEA

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0001727 "lipid kinase activity" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0031571 "mitotic G1 DNA damage checkpoint" evidence=IEA

GO:0045930 "negative regulation of mitotic cell cycle" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IEA

ZFIN|ZDB-GENE-111104-3 dgkza "diacylglycerol kinase, zeta a" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query:    73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
             +LK+LH +G  L   D  G+T LHY    G K++VKYII  AP+ IL++ + + G+T LH
Sbjct:   998 KLKELHKKGADLCVQDPAGRTLLHYAVEVGSKEIVKYIIDNAPTDILDVTEKENGETVLH 1057

Query:   133 KAAMFKRRSIC 143
             KAA    R+IC
Sbjct:  1058 KAASLCHRTIC 1068

GO:0004143 "diacylglycerol kinase activity" evidence=IEA

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|Q9Y2G4 ANKRD6 "Ankyrin repeat domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 7.0e-10, P = 7.0e-10
 Identities = 54/186 (29%), Positives = 85/186 (45%)

Query:    35 KAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN----HFFFQ-LKDLHSQGYSLLSIDS 89
             +A  VG+ +++  L  +G +L +   KD +  L+    H F Q  K L   G ++L+ + 
Sbjct:    81 RATVVGNTEIIAALIHEGCALDR-QDKDGNTALHEASWHGFSQSAKLLIKAGANVLAKNK 139

Query:    90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-- 147
              G TALH   +  H    + ++     + L    N+ G T LH AA +   SI  + L  
Sbjct:   140 AGNTALHLACQNSHSQSTRVLLLAGSRADLK---NNAGDTCLHVAARYNHLSIIRLLLTA 196

Query:   148 FFS-----SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA 202
             F S       G TALH AA    + +  +L+  GA  T+ +    TP   A   N+ E+A
Sbjct:   197 FCSVHEKNQAGDTALHVAAALNHKKVAKILLEAGADTTIVNNAGQTPLETARYHNNPEVA 256

Query:   203 AYLEKS 208
               L K+
Sbjct:   257 LLLTKA 262

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

MGI|MGI:2154278 Ankrd6 "ankyrin repeat domain 6" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 5.7e-09, P = 5.7e-09
 Identities = 54/186 (29%), Positives = 85/186 (45%)

Query:    35 KAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN----HFFFQ-LKDLHSQGYSLLSIDS 89
             +A  VG+ ++L  L  +G +L +   KD +  L+    H F Q  K L   G ++L+ + 
Sbjct:    81 RATVVGNTEILTALIREGCALDR-QDKDGNTALHEAAWHGFSQSAKLLVKAGANVLARNK 139

Query:    90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-- 147
              G TALH   +  H    + ++     + L    N+ G T LH AA +   S+  + L  
Sbjct:   140 AGNTALHLACQNSHSQSTRILLLGGSRADLK---NNAGDTCLHVAARYNHLSVVRLLLNA 196

Query:   148 FFS-----SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA 202
             F S       G TALH AA    + +  +L+  GA  T+ +    TP   A   N+ E+A
Sbjct:   197 FCSVHEKNQAGDTALHVAAALNHKKVVKVLLEAGADTTIVNNAGQTPLETARYHNNPEVA 256

Query:   203 AYLEKS 208
               L K+
Sbjct:   257 LLLTKA 262

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IGI;IDA

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IDA

UNIPROTKB|F1P1H5 DGKI "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 55/142 (38%), Positives = 67/142 (47%)

Query:    75 KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
             KD  SQ Y L S  S    AL      G  D++K+I  C   + L +Q  D G + LH A
Sbjct:   767 KDA-SQTYILQSPVSSEDQALLQAVIAG--DLLKFIECCKKGANLLIQGPDHG-SLLHHA 822

Query:   135 AMFKRRSICWMFLFF----------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
             A      I    L            S  G+TALHKAA  + R+IC +LV  GASL   D 
Sbjct:   823 AKSGHGEIVKYILEHGPSELLDMTDSETGETALHKAACQRHRAICQLLVDAGASLRKTDS 882

Query:   185 DSNTPRALALLANDTELAAYLE 206
                TPR  A  A D +LA+YLE
Sbjct:   883 KGKTPRDRAQQAGDPDLASYLE 904

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004143 "diacylglycerol kinase activity" evidence=IEA

GO:0005095 "GTPase inhibitor activity" evidence=IEA

GO:0017016 "Ras GTPase binding" evidence=IEA

GO:0032045 "guanyl-nucleotide exchange factor complex" evidence=IEA

GO:0032317 "regulation of Rap GTPase activity" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|J9P1Q1 DGKI "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 148 (57.2 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 36/107 (33%), Positives = 59/107 (55%)

Query:    45 LKDLHSQGYSLKKIPPKDDHPNLNHFF----FQLKDLHSQGYSLLSIDSVGQTALHYGSR 100
             L+DL S    L+     +DH  L         +L + +  G SLL       + LH+ ++
Sbjct:   602 LRDL-SHSRVLQSPVSSEDHAILQAVIAGDLMKLMESYKNGGSLLIQGPDHCSLLHHAAK 660

Query:   101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
              GH ++VKYI+   PS +L+M D++ G+TALHKAA  + R++C + +
Sbjct:   661 TGHGEIVKYILDHGPSELLDMADSETGETALHKAACQRNRAVCQLLV 707

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0004143 "diacylglycerol kinase activity" evidence=IEA

UNIPROTKB|E1C4S8 ANKRD6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 147 (56.8 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 58/201 (28%), Positives = 93/201 (46%)

Query:    20 LDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN----HFFFQ-L 74
             LDI +  ++T+  + +AA VG+  ++  L  +G +L +   KD +  L+    H F Q  
Sbjct:    68 LDIQDDGDQTA--LHRAAVVGNTDVIASLIQEGCALDR-QDKDGNTALHEACWHGFSQSA 124

Query:    75 KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
             K L   G ++L+ +  G T LH   +  H    + ++     + L    N+ G T LH A
Sbjct:   125 KVLVKAGANVLAKNKAGNTPLHLACQNSHSQSTRVLLLGGSRADLK---NNAGDTCLHVA 181

Query:   135 AMFKRRSICWMFL--FFS-----SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSN 187
             A +    I  + L  F S       G TALH AA    R +  +L+  GA  +V +    
Sbjct:   182 ARYNHLPIVRVLLSAFCSVHEKNQAGDTALHVAAALNHRKVVKLLLEAGADTSVVNNAGQ 241

Query:   188 TPRALALLANDTELAAYLEKS 208
             TP  +A   N+ E+A  L K+
Sbjct:   242 TPLEVARQHNNPEVALLLTKA 262

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

UNIPROTKB|E2R4Q0 ANKRD6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 147 (56.8 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 54/186 (29%), Positives = 85/186 (45%)

Query:    35 KAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN----HFFFQ-LKDLHSQGYSLLSIDS 89
             +A  VG+ +++  L  +G +L +   KD +  L+    H F Q  K L   G ++L+ + 
Sbjct:    81 RATVVGNTEVIAALIQEGCALDR-QDKDGNTALHEASWHGFSQSAKLLVKAGANVLAKNK 139

Query:    90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-- 147
              G TALH   +  H    + ++     + L    N+ G T LH AA +   SI  + L  
Sbjct:   140 AGNTALHLACQNSHSQSTRVLLLGGSRADLK---NNAGDTCLHVAARYNHLSIIKLLLSA 196

Query:   148 FFS-----SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA 202
             F S       G TALH AA    + +  +L+  GA  T+ +    TP   A   N+ E+A
Sbjct:   197 FCSVHEKNQAGDTALHVAAALNHKKVVKILLEAGADGTIVNNAGQTPLETARYHNNPEVA 256

Query:   203 AYLEKS 208
               L K+
Sbjct:   257 LLLTKA 262

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9HYV6	Y3287_PSEAE	No assigned EC number	0.3018	0.6586	0.8011	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	208
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-18
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.003
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 76.7 bits (189), Expect = 4e-18
 Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 86  SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
           + D  G+T LH  +  GH +VVK ++       +N +DND G+T LH AA      I  +
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD--VNAKDND-GRTPLHLAAKNGHLEIVKL 58

Query: 146 FL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND 198
            L            G T LH AA      +  +L+  GA +  +D D  TP  LA     
Sbjct: 59  LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH 118

Query: 199 TELAAYL 205
            E+   L
Sbjct: 119 LEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 19/148 (12%)

Query: 74  LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD--VVKYIIA--CAPSSILNMQDNDKGQT 129
           L+ L   G  + ++D   ++ LH+  +       +V+ +I   C P++      +  G T
Sbjct: 170 LRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAAT-----DMLGNT 224

Query: 130 ALHKAAMFK--RRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLT 180
            LH  A     +RS+    L         +  GQT LH AA+F     C  L+A GA + 
Sbjct: 225 PLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN 284

Query: 181 VKDYDSNTPRALALLANDTE-LAAYLEK 207
               D NTP +L +  N+   + A L K
Sbjct: 285 AVSSDGNTPLSLMVRNNNGRAVRAALAK 312

Length = 471

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 74  LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
           +K L  +G  + + D  G T LH  +R G+ DVVK ++     + +N +D D G+T LH 
Sbjct: 56  VKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH--GADVNARDKD-GRTPLHL 112

Query: 134 AAMFKRRSIC 143
           AA      + 
Sbjct: 113 AAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 34  LKAARVGDIKMLKDLHSQGYSLKKI-PPKDDHPNLNHFFFQLKDLHSQ-------GYSLL 85
           L       + +L        SL    P                   S+          L 
Sbjct: 8   LLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLA 67

Query: 86  SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
           + D  G+  LH  +  G   +VK ++A      +N +D D G T LH AA+        +
Sbjct: 68  ARDLDGRLPLHSAASKGDDKIVKLLLASGAD--VNAKDAD-GDTPLHLAALNGNPPEGNI 124

Query: 146 FLF---------------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPR 190
            +                    G T LH AA+     I  +L+  GA    ++    T  
Sbjct: 125 EVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTAL 184

Query: 191 ALALLANDTELAAYLEKS 208
             A      EL   L   
Sbjct: 185 DPAAKNGRIELVKLLLDK 202

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 12/96 (12%)

Query: 95  LHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL------- 147
           LH  ++ G+ ++VK ++       +N+ D D   TALH AA      I  + L       
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD--VNLGDTD---TALHLAARNGNLEIVKLLLEHGADVN 55

Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
                G TALH AA      I  +L+  GA + +KD
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 14/84 (16%)

Query: 36  AARVGDIKMLKDLHSQGYSL---KKIPP-----KDDHPNLNHFFFQLKDLHSQGYSLLSI 87
           AA+ G+++++K L  +G  +             ++ +  +      +K L   G  + + 
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEI------VKLLLEHGADVNAK 57

Query: 88  DSVGQTALHYGSRYGHKDVVKYII 111
           D  G TALH  +R G+ ++VK ++
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 93  TALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           TALH  +  G  ++VKY++       +N  D D G TALH AA      +  + L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD--INRTDED-GNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
            G T LH AA +    +   L+  G  L ++D D  T   LA
Sbjct: 15  NGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 155 TALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
           TALHKAA+  R  +   L+  G  +   D D NT   +A    + E+   L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 74  LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII 111
           +K L  +G  +   D  G TALH  +  G+ +V+K ++
Sbjct: 17  VKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 131 LHKAAMFKRRSICWMFL-----FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
           LH AA      +  + L            TALH AA      I  +L+  GA +  KD D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 186 SNTPRALALLANDTELAAYL 205
            NT   LA    + E+   L
Sbjct: 61  GNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 33.7 bits (78), Expect = 0.004
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
           G T LH AA      +  +L+  GA +  +D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	99.98
KOG4412|consensus	226		99.98
PHA02875	413	ankyrin repeat protein; Provisional	99.98
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
KOG0509|consensus	600		99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
KOG0509|consensus	600		99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
KOG0510|consensus	929		99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
KOG0508|consensus	615		99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
KOG0510|consensus	929		99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.92
KOG0502|consensus	296		99.92
KOG4177|consensus	1143		99.92
KOG4177|consensus	1143		99.91
PHA02795	437	ankyrin-like protein; Provisional	99.91
KOG0508|consensus	615		99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.9
PHA02792	631	ankyrin-like protein; Provisional	99.89
PHA02859	209	ankyrin repeat protein; Provisional	99.89
KOG0505|consensus	527		99.89
PHA02792	631	ankyrin-like protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0507|consensus	854		99.87
PHA02741	169	hypothetical protein; Provisional	99.86
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.86
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.85
KOG0514|consensus	452		99.85
KOG0514|consensus	452		99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.82
KOG0502|consensus	296		99.82
KOG0505|consensus	527		99.79
KOG0195|consensus	448		99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
KOG0512|consensus	228		99.76
KOG0507|consensus	854		99.74
KOG0512|consensus	228		99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
KOG3676|consensus	782		99.66
KOG4369|consensus	2131		99.66
KOG0195|consensus	448		99.61
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.61
KOG4369|consensus	2131		99.6
KOG3676|consensus	782		99.57
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
KOG4214|consensus	117		99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.51
KOG4214|consensus	117		99.51
KOG1710|consensus	396		99.47
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.47
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.43
KOG0515|consensus	752		99.35
KOG0515|consensus	752		99.31
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.3
KOG1710|consensus	396		99.24
KOG0782|consensus	1004		99.09
PF13606	30	Ank_3: Ankyrin repeat	99.03
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.97
KOG0818|consensus	669		98.97
PF13606	30	Ank_3: Ankyrin repeat	98.94
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.86
KOG0783|consensus	1267		98.84
KOG0506|consensus	622		98.83
KOG0818|consensus	669		98.77
KOG0522|consensus	560		98.75
KOG0783|consensus	1267		98.72
KOG0506|consensus	622		98.69
KOG3609|consensus	822		98.56
KOG0511|consensus	516		98.56
KOG0522|consensus	560		98.53
KOG3609|consensus	822		98.43
KOG0782|consensus	1004		98.41
KOG0705|consensus	749		98.41
KOG0705|consensus	749		98.37
KOG2384|consensus	223		98.35
KOG2384|consensus	223		98.16
KOG0511|consensus	516		98.08
KOG0521|consensus	785		97.99
KOG0520|consensus	975		97.97
KOG0521|consensus	785		97.92
KOG0520|consensus	975		97.46
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.36
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.35
KOG2505|consensus	591		97.14
KOG2505|consensus	591		97.02
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.44
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.99
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.9
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.83
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.81
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.01

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.3e-35  Score=218.76  Aligned_cols=180  Identities=19%  Similarity=0.128  Sum_probs=162.9

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHH
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGS   99 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~   99 (208)
                      ..+..|.||||.|+..|+.++++.|+++|++++..+  +.+|++    .+..+++++|+++|++++.+|..|+||||+|+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa  102 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAV  102 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            346778999999999999999999999999998764  567765    56689999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccccCCCCCC-ccHHHHHHhhCcHHHHHHHHhcC------CCCCcHHHHHHhhCCHHHHHHH
Q psy4236         100 RYGHKDVVKYIIACAPSSILNMQDNDKG-QTALHKAAMFKRRSICWMFLFFS------SRGQTALHKAAMFKRRSICCML  172 (208)
Q Consensus       100 ~~g~~~~~~~ll~~g~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~l~~~~------~~~~t~l~~A~~~~~~~~~~~L  172 (208)
                      ..|+.+++++|++.|++  ++.++ ..| .||||+|+..++.+++++|++..      ..|.||||+|+..|+.+++++|
T Consensus       103 ~~g~~eivk~Ll~~gad--in~~~-~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lL  179 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWR--LMFYG-KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL  179 (284)
T ss_pred             HcCCHHHHHHHHHCCCC--cCccC-CCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHH
Confidence            99999999999999998  77664 455 58999999999999999999752      2478999999999999999999


Q ss_pred             HhCCCCCcccCCCCCCH-HHHHHHcCCHHHHHHHhhC
Q psy4236         173 VAGGASLTVKDYDSNTP-RALALLANDTELAAYLEKS  208 (208)
Q Consensus       173 l~~g~~~~~~~~~g~t~-l~~a~~~~~~~~~~~L~~~  208 (208)
                      +++|++++.++..|.|| ||+|+.+|+.+++++|++.
T Consensus       180 L~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~  216 (284)
T PHA02791        180 LDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKY  216 (284)
T ss_pred             HHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC
Confidence            99999999999999987 9999999999999999863

>KOG4412|consensus

Probab=100.00  E-value=2.4e-33  Score=188.49  Aligned_cols=177  Identities=21%  Similarity=0.225  Sum_probs=156.5

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHH-cCCCCcccCCCCCCCcc----chHHHHHHHHHHc-CCCCCcCCCCCccHHHHHH
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHS-QGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQ-GYSLLSIDSVGQTALHYGS   99 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~-~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~-g~~~~~~d~~g~t~l~~a~   99 (208)
                      +..+++|||+||..|+.+++.+|++ -+..+|.+|..|++|++    .+..++++.|+.. |+++|.....|+|+||||+
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAa  114 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAA  114 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhh
Confidence            4468899999999999999999995 58999999999999975    5568999999988 9999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHH
Q psy4236         100 RYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCML  172 (208)
Q Consensus       100 ~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~L  172 (208)
                      ..|+.++.++|+++|+.  ++.+| ..|+||||.|+..|..+++++|+..       |+.|+||||.|...|+.++...|
T Consensus       115 gK~r~eIaqlLle~ga~--i~~kD-~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lL  191 (226)
T KOG4412|consen  115 GKGRLEIAQLLLEKGAL--IRIKD-KQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLL  191 (226)
T ss_pred             cCChhhHHHHHHhcCCC--Ccccc-cccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHH
Confidence            99999999999999988  88884 8899999999999999999999954       78899999999999999999999


Q ss_pred             HhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236         173 VAGGASLTVKDYDSNTPRALALLANDTELAAYLE  206 (208)
Q Consensus       173 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~  206 (208)
                      +++|+|....|+.| ||+..|+..-..-+.+.++
T Consensus       192 V~~gAd~~~edke~-t~~~~a~~~l~~alk~~~l  224 (226)
T KOG4412|consen  192 VRAGADTDREDKEG-TALRIACNELLEALKEQML  224 (226)
T ss_pred             HHhccceeeccccC-chHHHHHHHHHHHHHHHhh
Confidence            99999999999988 9988776654444444343

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-31  Score=211.45  Aligned_cols=179  Identities=19%  Similarity=0.149  Sum_probs=147.2

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCC-cCCCCCccHHHHHHhc
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLL-SIDSVGQTALHYGSRY  101 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~-~~d~~g~t~l~~a~~~  101 (208)
                      ..|.||||.|+..|+.+++++|+++|++++..+..+.++++    .+..++++.|++.|...+ ..+..|.||||+|+..
T Consensus        33 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  112 (413)
T PHA02875         33 YDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATIL  112 (413)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHh
Confidence            35778888888888888888888888888887777777754    556788888888887664 3456788999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHh
Q psy4236         102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVA  174 (208)
Q Consensus       102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~  174 (208)
                      |+.+++++|++.|++  ++.. +..|.||||+|+..|+.+++++|++.       +..|.||||+|+..|+.+++++|++
T Consensus       113 ~~~~iv~~Ll~~gad--~~~~-~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~  189 (413)
T PHA02875        113 KKLDIMKLLIARGAD--PDIP-NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD  189 (413)
T ss_pred             CCHHHHHHHHhCCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999998888  6666 46788999999998999999888854       4568899999999999999999999


Q ss_pred             CCCCCcccCCCCC-CHHHHHHHcCCHHHHHHHhhC
Q psy4236         175 GGASLTVKDYDSN-TPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       175 ~g~~~~~~~~~g~-t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      .|++++..+..|. +|+++|+.+|+.+++++|+++
T Consensus       190 ~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~  224 (413)
T PHA02875        190 SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR  224 (413)
T ss_pred             CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence            9999888887774 788889999999999888763

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.98  E-value=2.2e-31  Score=215.30  Aligned_cols=179  Identities=21%  Similarity=0.263  Sum_probs=156.1

Q ss_pred             hhhchHHHHHHH--HhCCHHHHHHHHHcCCCCcccCCCCCCCcc----ch--HHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236          26 LEKTSEGVLKAA--RVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NH--FFFQLKDLHSQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        26 ~~~~~~~l~~A~--~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~--~~~~~~~l~~~g~~~~~~d~~g~t~l~~   97 (208)
                      +..|.||||.|+  ..|+.+++++|+++|++++..+..|.++++    .+  ..+++++|+++|++++.+|..|.||||+
T Consensus       103 d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~  182 (480)
T PHA03100        103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHI  182 (480)
T ss_pred             CCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHH
Confidence            445778999999  999999999999999999998888888864    44  7888999999999999888899999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCCCCC------ccHHHHHHhhCc--HHHHHHHHhc-------CCCCCcHHHHHHh
Q psy4236          98 GSRYGHKDVVKYIIACAPSSILNMQDNDKG------QTALHKAAMFKR--RSICWMFLFF-------SSRGQTALHKAAM  162 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~------~t~l~~a~~~~~--~~~~~~l~~~-------~~~~~t~l~~A~~  162 (208)
                      |+..|+.+++++|++.|++  ++.. +..+      .||||+|+..++  .+++++|++.       +..|.||||+|+.
T Consensus       183 A~~~~~~~iv~~Ll~~ga~--~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~  259 (480)
T PHA03100        183 AVEKGNIDVIKFLLDNGAD--INAG-DIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVY  259 (480)
T ss_pred             HHHhCCHHHHHHHHHcCCC--ccCC-CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999988  6655 3456      889999999988  9999998855       5668999999999


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         163 FKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       163 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .|+.+++++|++.|+|++..|..|.||+++|+.+++.+++++|++
T Consensus       260 ~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~  304 (480)
T PHA03100        260 NNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN  304 (480)
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999876

>KOG4412|consensus

Probab=99.98  E-value=2.2e-31  Score=179.01  Aligned_cols=175  Identities=25%  Similarity=0.225  Sum_probs=157.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCC-CCcccCC-CCCCCcc----chHHHHHHHHH-HcCCCCCcCCCCCccHHHHHHhcC
Q psy4236          30 SEGVLKAARVGDIKMLKDLHSQGY-SLKKIPP-KDDHPNL----NHFFFQLKDLH-SQGYSLLSIDSVGQTALHYGSRYG  102 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~~g~-~~~~~~~-~~~~~~~----~~~~~~~~~l~-~~g~~~~~~d~~g~t~l~~a~~~g  102 (208)
                      .++.+.+++.....-++.+++... .++.++. .++++++    .++.+++.+|+ +-+..+|.+|..|+||||+|+..|
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g   83 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNG   83 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcC
Confidence            356677788888888999999877 7777776 7788864    57799999999 678888999999999999999999


Q ss_pred             CHHHHHHHHHc-CCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHh
Q psy4236         103 HKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVA  174 (208)
Q Consensus       103 ~~~~~~~ll~~-g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~  174 (208)
                      +.++|+.|+.. |++  ++.. +..|.|+||||+..|..+++++|++.       |..|.||||.|+..|...++++|+.
T Consensus        84 ~~evVk~Ll~r~~ad--vna~-tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~  160 (226)
T KOG4412|consen   84 NDEVVKELLNRSGAD--VNAT-TNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS  160 (226)
T ss_pred             cHHHHHHHhcCCCCC--ccee-cCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHh
Confidence            99999999988 888  8888 57899999999999999999999954       7889999999999999999999999


Q ss_pred             CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         175 GGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       175 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .|+.+|..|..|+||||.|..-|+.+....|++
T Consensus       161 ~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~  193 (226)
T KOG4412|consen  161 QGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVR  193 (226)
T ss_pred             cCCCCCcccccCccHHHHHHhccCchHHHHHHH
Confidence            999999999999999999988889998888875

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.98  E-value=9.8e-31  Score=207.81  Aligned_cols=178  Identities=19%  Similarity=0.130  Sum_probs=162.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK  104 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~  104 (208)
                      .+++|+.|++.|+.+++++|+++|++++..+..|.+|++    .+..+++++|+++|++++..+..+.||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            357999999999999999999999999999989999875    5668999999999999999989999999999999999


Q ss_pred             HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCC
Q psy4236         105 DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGA  177 (208)
Q Consensus       105 ~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~  177 (208)
                      +++++|++.|+.  .....+..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|+++|+
T Consensus        82 ~~v~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~  159 (413)
T PHA02875         82 KAVEELLDLGKF--ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA  159 (413)
T ss_pred             HHHHHHHHcCCc--ccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            999999999876  4332245699999999999999999999965       4568999999999999999999999999


Q ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         178 SLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       178 ~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      +++..|..|.||||+|+..|+.+++++|+++
T Consensus       160 ~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~  190 (413)
T PHA02875        160 CLDIEDCCGCTPLIIAMAKGDIAICKMLLDS  190 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            9999999999999999999999999999863

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.5e-30  Score=208.74  Aligned_cols=175  Identities=20%  Similarity=0.238  Sum_probs=152.3

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccch--------------------------------------
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNH--------------------------------------   69 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~--------------------------------------   69 (208)
                      .+.+|||.||..|+.+++++|+++|++++..+..|.+|++..                                      
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHH
Confidence            356799999999999999999999999999998888875311                                      


Q ss_pred             ------------------------------HHHHHHHHHHcCCCCCcCCCC-CccHHHHHHhcCCHHHHHHHHHcCCCCc
Q psy4236          70 ------------------------------FFFQLKDLHSQGYSLLSIDSV-GQTALHYGSRYGHKDVVKYIIACAPSSI  118 (208)
Q Consensus        70 ------------------------------~~~~~~~l~~~g~~~~~~d~~-g~t~l~~a~~~g~~~~~~~ll~~g~~~~  118 (208)
                                                    ..+++++|+++|++++..+.. |.||||+|+..|+.+++++|++.|++  
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad--  193 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN--  193 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC--
Confidence                                          023788899999999999998 99999999999999999999999998  


Q ss_pred             cccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhh-CCHHHHHHHHhCCCCCcccCC-CCCCH
Q psy4236         119 LNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMF-KRRSICCMLVAGGASLTVKDY-DSNTP  189 (208)
Q Consensus       119 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~-~g~t~  189 (208)
                      ++.. +..|.||||.|+..++.+++++|++.       +..|.||||+|+.. ++.+++++|+++|++++..+. .|.||
T Consensus       194 ~n~~-d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~Tp  272 (477)
T PHA02878        194 VNIP-DKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTA  272 (477)
T ss_pred             CCCc-CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCH
Confidence            7777 47899999999999999999999954       56799999999976 689999999999999998876 78999


Q ss_pred             HHHHHHcCCHHHHHHHhh
Q psy4236         190 RALALLANDTELAAYLEK  207 (208)
Q Consensus       190 l~~a~~~~~~~~~~~L~~  207 (208)
                      ||+|  .++.+++++|++
T Consensus       273 Lh~A--~~~~~~v~~Ll~  288 (477)
T PHA02878        273 LHSS--IKSERKLKLLLE  288 (477)
T ss_pred             HHHH--ccCHHHHHHHHH
Confidence            9999  567888888875

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.3e-30  Score=206.79  Aligned_cols=179  Identities=22%  Similarity=0.228  Sum_probs=159.5

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      .+..|.||||.|+..|+.+++++|+++|++++..+..|.+|++    .+..+++++|+++|++++..+..|.||||+|+.
T Consensus       120 ~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~  199 (434)
T PHA02874        120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE  199 (434)
T ss_pred             CCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            3456889999999999999999999999999999999999975    456899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH------hcCCCCCcHHHHHHhhC-CHHHHHHHH
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL------FFSSRGQTALHKAAMFK-RRSICCMLV  173 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~------~~~~~~~t~l~~A~~~~-~~~~~~~Ll  173 (208)
                      .|+.+++++|++.|++  +... +..|.||||.|+..+. +.+++|+      .++..|.||||+|+..+ +.+++++|+
T Consensus       200 ~g~~~iv~~Ll~~g~~--i~~~-~~~g~TpL~~A~~~~~-~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll  275 (434)
T PHA02874        200 YGDYACIKLLIDHGNH--IMNK-CKNGFTPLHNAIIHNR-SAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILL  275 (434)
T ss_pred             cCCHHHHHHHHhCCCC--CcCC-CCCCCCHHHHHHHCCh-HHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHH
Confidence            9999999999999998  7666 4789999999999865 4556665      34678999999999876 789999999


Q ss_pred             hCCCCCcccCCCCCCHHHHHHHcC-CHHHHHHHhh
Q psy4236         174 AGGASLTVKDYDSNTPRALALLAN-DTELAAYLEK  207 (208)
Q Consensus       174 ~~g~~~~~~~~~g~t~l~~a~~~~-~~~~~~~L~~  207 (208)
                      .+|++++..|..|.||+++|+..+ ..++++.|++
T Consensus       276 ~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~  310 (434)
T PHA02874        276 YHKADISIKDNKGENPIDTAFKYINKDPVIKDIIA  310 (434)
T ss_pred             HCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHH
Confidence            999999999999999999999987 6677777764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.8e-30  Score=210.00  Aligned_cols=182  Identities=16%  Similarity=0.130  Sum_probs=153.7

Q ss_pred             HhhhhchHHHHHHHHh-----CCHHHHHHHHHcCCCCcccCCCCCCCccc-------hHHHHHHHHHHcCCCCCcCCCCC
Q psy4236          24 NILEKTSEGVLKAARV-----GDIKMLKDLHSQGYSLKKIPPKDDHPNLN-------HFFFQLKDLHSQGYSLLSIDSVG   91 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~-----g~~~~~~~Li~~g~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~g~~~~~~d~~g   91 (208)
                      ..+..|.||||.|+..     +..++++.|+++|+++|.++..|.+|++.       ...+++++|+++|++++.+|..|
T Consensus        66 ~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g  145 (489)
T PHA02798         66 GLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDG  145 (489)
T ss_pred             CCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCC
Confidence            3446678899988764     67899999999999999999999998752       25788999999999999999999


Q ss_pred             ccHHHHHHhcCC---HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhh----CcHHHHHHHHh----------------
Q psy4236          92 QTALHYGSRYGH---KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMF----KRRSICWMFLF----------------  148 (208)
Q Consensus        92 ~t~l~~a~~~g~---~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~----~~~~~~~~l~~----------------  148 (208)
                      .||||+|+..++   .+++++|++.|++  ++..++..|.||||.++..    ++.+++++|++                
T Consensus       146 ~tpL~~a~~~~~~~~~~vv~~Ll~~gad--in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~  223 (489)
T PHA02798        146 FTMLQVYLQSNHHIDIEIIKLLLEKGVD--INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKF  223 (489)
T ss_pred             CcHHHHHHHcCCcchHHHHHHHHHhCCC--cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchH
Confidence            999999999887   8999999999988  7666445688999887654    35666666652                


Q ss_pred             ------------------------------cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC
Q psy4236         149 ------------------------------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND  198 (208)
Q Consensus       149 ------------------------------~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  198 (208)
                                                    ++..|.||||+|+..|+.+++++|++.|+|++..+..|.|||++|+.+++
T Consensus       224 ~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        224 MEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES  303 (489)
T ss_pred             HHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc
Confidence                                          23458999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy4236         199 TELAAYLEK  207 (208)
Q Consensus       199 ~~~~~~L~~  207 (208)
                      .++++.|++
T Consensus       304 ~~iv~~lL~  312 (489)
T PHA02798        304 KFIFNSILN  312 (489)
T ss_pred             HHHHHHHHc
Confidence            999999875

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.1e-30  Score=193.13  Aligned_cols=169  Identities=15%  Similarity=0.113  Sum_probs=149.7

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCc-cHHHHHHhcCC
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQ-TALHYGSRYGH  103 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~-t~l~~a~~~g~  103 (208)
                      +.||||.|+..|+.++++.|+++|++++..+..|.+|++    .+..+++++|+++|++++.++..|+ ||||+|+..|+
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~  140 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND  140 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCC
Confidence            578999999999999999999999999999999999975    5668999999999999999988874 89999999999


Q ss_pred             HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcC-------CCCCcH-HHHHHhhCCHHHHHHHHhC
Q psy4236         104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS-------SRGQTA-LHKAAMFKRRSICCMLVAG  175 (208)
Q Consensus       104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-------~~~~t~-l~~A~~~~~~~~~~~Ll~~  175 (208)
                      .+++++|++.+++  ..  +...|.||||+|+..|+.+++++|++.+       ..|.|| ||+|+..|+.+++++|+++
T Consensus       141 ~eivk~LL~~~~~--~~--d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~  216 (284)
T PHA02791        141 VSIVSYFLSEIPS--TF--DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKY  216 (284)
T ss_pred             HHHHHHHHhcCCc--cc--ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC
Confidence            9999999998765  21  1235899999999999999999999663       456766 9999999999999999999


Q ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         176 GASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       176 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      |++++.+|..| +++      +..+++++|+++
T Consensus       217 Ga~in~~~~~~-~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        217 DINIYSVNLEN-VLL------DDAEIAKMIIEK  242 (284)
T ss_pred             CCCCccCcccC-ccC------CCHHHHHHHHHh
Confidence            99999999854 554      899999999874

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=3.8e-30  Score=204.92  Aligned_cols=182  Identities=14%  Similarity=0.165  Sum_probs=158.1

Q ss_pred             hHHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccc------hHHHHHHHHHHcCCCCCc-CCCCCcc
Q psy4236          21 DIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN------HFFFQLKDLHSQGYSLLS-IDSVGQT   93 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~-~d~~g~t   93 (208)
                      ++...+..|.||||.|++.|+.++++.|+++|++++.++..|.+|++.      ...+++++|+++|++++. .|..|.|
T Consensus        64 dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~t  143 (446)
T PHA02946         64 SPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCG  143 (446)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCc
Confidence            344556778999999999999999999999999999999999999752      247889999999999995 6889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhC--cHHHHHHHHhc-------CCCCCcHHHHHHhhC
Q psy4236          94 ALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFK--RRSICWMFLFF-------SSRGQTALHKAAMFK  164 (208)
Q Consensus        94 ~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~l~~~-------~~~~~t~l~~A~~~~  164 (208)
                      ||| |+..++.+++++|++.|++  ++.. +..|+||||+|+..+  +.+++++|++.       +..|.||||+|+..+
T Consensus       144 pL~-aa~~~~~~vv~~Ll~~gad--~~~~-d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        144 PLL-ACTDPSERVFKKIMSIGFE--ARIV-DKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             HHH-HHHCCChHHHHHHHhcccc--cccc-CCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            998 5667899999999999998  7777 478999999988754  46899999854       678999999999876


Q ss_pred             --CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC-HHHHHHHhh
Q psy4236         165 --RRSICCMLVAGGASLTVKDYDSNTPRALALLAND-TELAAYLEK  207 (208)
Q Consensus       165 --~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~-~~~~~~L~~  207 (208)
                        +.+++++|+. |++++.+|..|.||||+|+.+++ .+++++|++
T Consensus       220 ~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~  264 (446)
T PHA02946        220 VKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLS  264 (446)
T ss_pred             CCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHh
Confidence              7889999985 89999999999999999999987 578888765

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=202.84  Aligned_cols=168  Identities=24%  Similarity=0.310  Sum_probs=133.5

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHH----------------------
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHS----------------------   79 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~----------------------   79 (208)
                      ...+.||||.|++.|+.+++++|+++|++++..+..+.+|++    .+..+++++|++                      
T Consensus        32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll  111 (434)
T PHA02874         32 VDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTIL  111 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHH
Confidence            345778999999999999999999999999988888887753    334455555554                      


Q ss_pred             -cCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CC
Q psy4236          80 -QGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SS  151 (208)
Q Consensus        80 -~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~  151 (208)
                       .|++++.++..|.||||+|+..|+.+++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +.
T Consensus       112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad--~n~~-d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~  188 (434)
T PHA02874        112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD--VNIE-DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN  188 (434)
T ss_pred             HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC--CCCc-CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence             4556777888899999999999999999999999988  7776 46789999999999999999999854       46


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHc
Q psy4236         152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA  196 (208)
Q Consensus       152 ~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  196 (208)
                      .|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus       189 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~  233 (434)
T PHA02874        189 NGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH  233 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHC
Confidence            688999999999999999999988877665555555444444443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.3e-30  Score=206.10  Aligned_cols=177  Identities=16%  Similarity=0.089  Sum_probs=148.6

Q ss_pred             chHHHHHHHHhC------CHHHHHHHHHcCCCCcccCCCCCCCccc-------hHHHHHHHHHHcCCCC-CcCCCCCccH
Q psy4236          29 TSEGVLKAARVG------DIKMLKDLHSQGYSLKKIPPKDDHPNLN-------HFFFQLKDLHSQGYSL-LSIDSVGQTA   94 (208)
Q Consensus        29 ~~~~l~~A~~~g------~~~~~~~Li~~g~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~g~~~-~~~d~~g~t~   94 (208)
                      +.|||+.|+..+      ..++++.|+++|+++|.++..|.+|++.       +..+++++|+++|+++ +.+|..|+||
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tp  148 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNL  148 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCH
Confidence            568999887654      4678999999999999999888888642       3578899999999999 7888899999


Q ss_pred             HHHHHhc--CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhC----cHHHHHHHHhc-------------------
Q psy4236          95 LHYGSRY--GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFK----RRSICWMFLFF-------------------  149 (208)
Q Consensus        95 l~~a~~~--g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~----~~~~~~~l~~~-------------------  149 (208)
                      ||+|+..  ++.+++++|++.|++  ++...+..|.||||.++..+    +.+++++|++.                   
T Consensus       149 Lh~a~~~~~~~~~iv~~Ll~~Gad--i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~  226 (494)
T PHA02989        149 LHMYLESFSVKKDVIKILLSFGVN--LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFL  226 (494)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCC--ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHH
Confidence            9988754  578899999999988  65532467889998887653    77888887732                   


Q ss_pred             --------------------------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHH
Q psy4236         150 --------------------------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAA  203 (208)
Q Consensus       150 --------------------------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  203 (208)
                                                +..|.||||+|+..|+.+++++|++.|+|++.+|..|.||||+|+.+|+.++++
T Consensus       227 ~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~  306 (494)
T PHA02989        227 DNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLN  306 (494)
T ss_pred             HhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence                                      234899999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q psy4236         204 YLEK  207 (208)
Q Consensus       204 ~L~~  207 (208)
                      .|++
T Consensus       307 ~LL~  310 (494)
T PHA02989        307 RILQ  310 (494)
T ss_pred             HHHh
Confidence            9885

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.2e-30  Score=205.86  Aligned_cols=179  Identities=21%  Similarity=0.213  Sum_probs=153.2

Q ss_pred             hhchHHHHH-----HHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc------chHHHHHHHHHHcCCCCCcCCCCCccHH
Q psy4236          27 EKTSEGVLK-----AARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL------NHFFFQLKDLHSQGYSLLSIDSVGQTAL   95 (208)
Q Consensus        27 ~~~~~~l~~-----A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~------~~~~~~~~~l~~~g~~~~~~d~~g~t~l   95 (208)
                      ..+.+|+|.     |+..|+.++++.|+++|++++..+..|.+|++      .+..+++++|++.|++++..+..|.|||
T Consensus        66 ~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L  145 (480)
T PHA03100         66 KNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLL  145 (480)
T ss_pred             ccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHH
Confidence            335678888     88888888888888888888888888888853      3567888999999999888888899999


Q ss_pred             HHHHhcC--CHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcC-------CCC------CcHHHHH
Q psy4236          96 HYGSRYG--HKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS-------SRG------QTALHKA  160 (208)
Q Consensus        96 ~~a~~~g--~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-------~~~------~t~l~~A  160 (208)
                      |+|+..|  +.+++++|++.|++  ++..+ ..|.||||+|+..|+.+++++|++.+       ..+      .||+|.|
T Consensus       146 ~~A~~~~~~~~~iv~~Ll~~g~d--in~~d-~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a  222 (480)
T PHA03100        146 HLYLESNKIDLKILKLLIDKGVD--INAKN-RYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIA  222 (480)
T ss_pred             HHHHHcCCChHHHHHHHHHCCCC--ccccc-CCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHH
Confidence            9999888  88999999999888  77764 57889999999999999999988653       334      7899999


Q ss_pred             HhhCC--HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         161 AMFKR--RSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       161 ~~~~~--~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      +..|+  .+++++|++.|++++.+|..|.||||+|+.+|+.+++++|+++
T Consensus       223 ~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  272 (480)
T PHA03100        223 ACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL  272 (480)
T ss_pred             HHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999  9999999999999999999999999999999999999999863

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=204.72  Aligned_cols=185  Identities=21%  Similarity=0.190  Sum_probs=129.1

Q ss_pred             hHHHhhhhchHHHHHHHHhC-CHHHHHHHHHcCCCCcccCCCCCCCccc------hHHHHHHHHHHcCCCCCcCCCCCcc
Q psy4236          21 DIINILEKTSEGVLKAARVG-DIKMLKDLHSQGYSLKKIPPKDDHPNLN------HFFFQLKDLHSQGYSLLSIDSVGQT   93 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g-~~~~~~~Li~~g~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~d~~g~t   93 (208)
                      ++...+..|.||||.|+..| ..++++.|+++|++++..+..|.+|++.      ...+++++|+++|++++..|..|.|
T Consensus        75 din~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~t  154 (471)
T PHA03095         75 DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMT  154 (471)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence            34444456777777777777 4777777777777777777777777542      2356677777777777776666777


Q ss_pred             HHHHHHhcC--CHHHHHHHHHcCCCCccccCC----------------------------------CCCCccHHHHHHhh
Q psy4236          94 ALHYGSRYG--HKDVVKYIIACAPSSILNMQD----------------------------------NDKGQTALHKAAMF  137 (208)
Q Consensus        94 ~l~~a~~~g--~~~~~~~ll~~g~~~~~~~~~----------------------------------~~~~~t~l~~a~~~  137 (208)
                      |||+|+..+  ..+++++|++.|++  +...+                                  +..|+||||+|+..
T Consensus       155 pL~~a~~~~~~~~~iv~~Ll~~g~~--~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~  232 (471)
T PHA03095        155 PLAVLLKSRNANVELLRLLIDAGAD--VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATG  232 (471)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence            776665544  35566666666555  33331                                  23444555555544


Q ss_pred             CcH--HHHHHHHh-------cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         138 KRR--SICWMFLF-------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       138 ~~~--~~~~~l~~-------~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +..  .+++.+++       ++..|.||||+|+..|+.+++++|++.|+|++..+.+|.||+++|+.+|+.++++.|++
T Consensus       233 ~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~  311 (471)
T PHA03095        233 SSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA  311 (471)
T ss_pred             CCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            432  33444442       35679999999999999999999999999999999999999999999999999998875

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=3.1e-29  Score=199.68  Aligned_cols=180  Identities=10%  Similarity=0.001  Sum_probs=147.1

Q ss_pred             hhhchHHHHHHHHhC--CHHHHHHHHHcCCCCcccCCCCCCCccc------hHHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236          26 LEKTSEGVLKAARVG--DIKMLKDLHSQGYSLKKIPPKDDHPNLN------HFFFQLKDLHSQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g--~~~~~~~Li~~g~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~d~~g~t~l~~   97 (208)
                      +..|.||||.|+..+  +.+++++|+++|++++.++..|.+|++.      ...++++.|+. |++++.+|..|.||||+
T Consensus       170 d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~  248 (446)
T PHA02946        170 DKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTL  248 (446)
T ss_pred             CCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHH
Confidence            445778888887654  4688888888888888888888888752      24577787774 88888888888899998


Q ss_pred             HHhcCC-HHHHHHHHHcCCCCc------------------cccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHH
Q psy4236          98 GSRYGH-KDVVKYIIACAPSSI------------------LNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALH  158 (208)
Q Consensus        98 a~~~g~-~~~~~~ll~~g~~~~------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~  158 (208)
                      |+..++ .++++.|++.|+...                  ++..+...|.||||+|+..|+.+++++|++++..+.||||
T Consensus       249 A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~~~~t~L~  328 (446)
T PHA02946        249 LIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDIICEDAMY  328 (446)
T ss_pred             HHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCCccccHHH
Confidence            888877 477888888775310                  1112223467999999999999999999999999999999


Q ss_pred             HHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         159 KAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       159 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +|+..++.+++++|+.+|++++.. .+|.||+|+|+.+++.++++.|++
T Consensus       329 ~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~  376 (446)
T PHA02946        329 YAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLML  376 (446)
T ss_pred             HHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999986 589999999999999999999975

>KOG0509|consensus

Probab=99.97  E-value=1.6e-29  Score=198.53  Aligned_cols=169  Identities=26%  Similarity=0.330  Sum_probs=95.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCC-CCCccHHHHHHhcCCHH
Q psy4236          32 GVLKAARVGDIKMLKDLHSQ-GYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSID-SVGQTALHYGSRYGHKD  105 (208)
Q Consensus        32 ~l~~A~~~g~~~~~~~Li~~-g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d-~~g~t~l~~a~~~g~~~  105 (208)
                      .++.|++.|+.+.++.|++. |.+++..|..|.+.++    +...+++++|+++|+++|..+ .-+.||||+|++.|+..
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~  126 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHIS  126 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHH
Confidence            45555556666666666655 5555555555555543    334555566666666665555 23555666666666666


Q ss_pred             HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh-------cCCCCCcHHHHHHhhCCHHHHHHHHhCCCC
Q psy4236         106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF-------FSSRGQTALHKAAMFKRRSICCMLVAGGAS  178 (208)
Q Consensus       106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-------~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~  178 (208)
                      ++++|+++|++  ++.+ +..|.+|+|.|+..++.-++-+++.       +|.+|+||||+|+..|....++.|++-|+.
T Consensus       127 vv~lLlqhGAd--pt~~-D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  127 VVDLLLQHGAD--PTLK-DKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             HHHHHHHcCCC--Ccee-cCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence            66666666655  4444 2455566666666555555555552       245555666666555555555555555555


Q ss_pred             CcccC-CCCCCHHHHHHHcCCHHHHH
Q psy4236         179 LTVKD-YDSNTPRALALLANDTELAA  203 (208)
Q Consensus       179 ~~~~~-~~g~t~l~~a~~~~~~~~~~  203 (208)
                      +...| ..|.||||+|+..|+..++.
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~  229 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVK  229 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEe
Confidence            55555 55556666666555555555

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=7.5e-29  Score=200.14  Aligned_cols=184  Identities=18%  Similarity=0.117  Sum_probs=154.0

Q ss_pred             hHHHhhhhchHHHHHHHHhC---CHHHHHHHHHcCCCCcccCCCCCCCcc----ch-HHHHHHHHHHcCCCCCcCCCCCc
Q psy4236          21 DIINILEKTSEGVLKAARVG---DIKMLKDLHSQGYSLKKIPPKDDHPNL----NH-FFFQLKDLHSQGYSLLSIDSVGQ   92 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g---~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~-~~~~~~~l~~~g~~~~~~d~~g~   92 (208)
                      ++...+..|.||||.|+..+   +.++++.|+++|+++|..+..|.+|++    .+ ..+++++|+++|++++.+|..|.
T Consensus        39 ~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~  118 (471)
T PHA03095         39 DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGR  118 (471)
T ss_pred             CcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCC
Confidence            45556777899999999999   999999999999999999999999975    34 58999999999999999999999


Q ss_pred             cHHHHHH--hcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhC--cHHHHHHHHhc-------------------
Q psy4236          93 TALHYGS--RYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFK--RRSICWMFLFF-------------------  149 (208)
Q Consensus        93 t~l~~a~--~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~l~~~-------------------  149 (208)
                      ||||+|+  ..++.+++++|++.|++  ++.. +..|.||||+++..+  ..+++++|++.                   
T Consensus       119 tpLh~a~~~~~~~~~iv~~Ll~~gad--~~~~-d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~  195 (471)
T PHA03095        119 TPLHVYLSGFNINPKVIRLLLRKGAD--VNAL-DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHL  195 (471)
T ss_pred             CHHHHHhhCCcCCHHHHHHHHHcCCC--CCcc-CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            9999999  55688999999999998  7777 478999999988765  56777777633                   


Q ss_pred             -----------------------CCCCCcHHHHHHhhCCH--HHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q psy4236         150 -----------------------SSRGQTALHKAAMFKRR--SICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAY  204 (208)
Q Consensus       150 -----------------------~~~~~t~l~~A~~~~~~--~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  204 (208)
                                             +..|.||||+|+..|+.  .+++.|+..|++++..|..|+||||+|+..|+.+++++
T Consensus       196 ~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~  275 (471)
T PHA03095        196 QSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRR  275 (471)
T ss_pred             HHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence                                   23455666666665543  46677788888899999899999999999999999999


Q ss_pred             Hhh
Q psy4236         205 LEK  207 (208)
Q Consensus       205 L~~  207 (208)
                      |++
T Consensus       276 LL~  278 (471)
T PHA03095        276 LIA  278 (471)
T ss_pred             HHH
Confidence            875

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=4.1e-29  Score=206.09  Aligned_cols=169  Identities=20%  Similarity=0.155  Sum_probs=143.3

Q ss_pred             HHHhCCHHHHHHHHHcCCCCcccCCCCCCCccc------hHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh---------
Q psy4236          36 AARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN------HFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR---------  100 (208)
Q Consensus        36 A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~---------  100 (208)
                      |++.|+.++++.|+++|++++.++..|.+|++.      +..+++++|+++|++++.+|..|+||||+|+.         
T Consensus       291 AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld  370 (764)
T PHA02716        291 LARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILD  370 (764)
T ss_pred             HHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhcccc
Confidence            466789999999999999999999999999863      24689999999999999999999999999865         


Q ss_pred             -----cCCHHHHHHHHHcCCCCccccCCCCCCccHHHH-H---HhhCcHHHHHHHHhc----------------------
Q psy4236         101 -----YGHKDVVKYIIACAPSSILNMQDNDKGQTALHK-A---AMFKRRSICWMFLFF----------------------  149 (208)
Q Consensus       101 -----~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~-a---~~~~~~~~~~~l~~~----------------------  149 (208)
                           .++.+++++|++.|++  ++.+ +..|+||||. +   ...+..+++++|++.                      
T Consensus       371 ~~~~~~~~~eVVklLL~~GAD--In~k-n~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~  447 (764)
T PHA02716        371 PETDNDIRLDVIQCLISLGAD--ITAV-NCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTP  447 (764)
T ss_pred             ccccccChHHHHHHHHHCCCC--CCCc-CCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcch
Confidence                 3688999999999999  8777 5789999993 2   223455666555421                      


Q ss_pred             ----------------------------------------------CCCCCcHHHHHHhhCCHH-----HHHHHHhCCCC
Q psy4236         150 ----------------------------------------------SSRGQTALHKAAMFKRRS-----ICCMLVAGGAS  178 (208)
Q Consensus       150 ----------------------------------------------~~~~~t~l~~A~~~~~~~-----~~~~Ll~~g~~  178 (208)
                                                                    +..|.||||+|+..|+..     ++++|++.|++
T Consensus       448 ~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD  527 (764)
T PHA02716        448 CIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYN  527 (764)
T ss_pred             hhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCC
Confidence                                                          346899999999998764     45999999999


Q ss_pred             CcccCCCCCCHHHHHHHcCCH-----HHHHHHhh
Q psy4236         179 LTVKDYDSNTPRALALLANDT-----ELAAYLEK  207 (208)
Q Consensus       179 ~~~~~~~g~t~l~~a~~~~~~-----~~~~~L~~  207 (208)
                      ++.+|.+|.||||+|+.+|+.     ++++.|++
T Consensus       528 IN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~  561 (764)
T PHA02716        528 INIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILD  561 (764)
T ss_pred             CcccCCCCCCHHHHHHHcCCccccHHHHHHHHHh
Confidence            999999999999999999976     99999986

>KOG0509|consensus

Probab=99.96  E-value=1.6e-29  Score=198.62  Aligned_cols=171  Identities=24%  Similarity=0.254  Sum_probs=153.6

Q ss_pred             HHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccC-CCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236          23 INILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIP-PKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        23 ~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~-~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~   97 (208)
                      .+-+.+|.++||+|+.+|+.+++++||++|+++|... ..+.+|++    .++..++..|+++|++++.+|..|.+|+|.
T Consensus        72 ~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHl  151 (600)
T KOG0509|consen   72 NNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHL  151 (600)
T ss_pred             CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHH
Confidence            3445578899999999999999999999999999999 55567765    567899999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh--------cCCCCCcHHHHHHhhCCHHHH
Q psy4236          98 GSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF--------FSSRGQTALHKAAMFKRRSIC  169 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~--------~~~~~~t~l~~A~~~~~~~~~  169 (208)
                      |++.|+.-.+-+++.++++  ++.+| .+|+|||+||+..|....+..|+.        .+..|.||||+|+..|+..++
T Consensus       152 a~~~~~~~~vayll~~~~d--~d~~D-~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v  228 (600)
T KOG0509|consen  152 AAQFGHTALVAYLLSKGAD--IDLRD-NNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAV  228 (600)
T ss_pred             HHHhCchHHHHHHHHhccc--CCCcC-CCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceE
Confidence            9999999999999999988  88885 789999999999999876666662        248899999999999999999


Q ss_pred             HHHHhCCCCCcccCCCCCCHHHHHHHc
Q psy4236         170 CMLVAGGASLTVKDYDSNTPRALALLA  196 (208)
Q Consensus       170 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~  196 (208)
                      ..|++.|++.+..|.+|.||+++|..+
T Consensus       229 ~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  229 KLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ehhhhcCCcccccccCCCCHHHHHHHh
Confidence            977789999999999999999999776

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=198.85  Aligned_cols=159  Identities=21%  Similarity=0.177  Sum_probs=140.4

Q ss_pred             HHHHHHHcCCCCcccCCC-CCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCc
Q psy4236          44 MLKDLHSQGYSLKKIPPK-DDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSI  118 (208)
Q Consensus        44 ~~~~Li~~g~~~~~~~~~-~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~  118 (208)
                      +++.|+++|++++..+.. |.+|++    .+..+++++|++.|++++..|..|.||||+|+..|+.+++++|++.|++  
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~--  226 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS--  226 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC--
Confidence            677778889999999988 888875    5668999999999999999999999999999999999999999999999  


Q ss_pred             cccCCCCCCccHHHHHHhh-CcHHHHHHHHhcC--------CCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCH
Q psy4236         119 LNMQDNDKGQTALHKAAMF-KRRSICWMFLFFS--------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP  189 (208)
Q Consensus       119 ~~~~~~~~~~t~l~~a~~~-~~~~~~~~l~~~~--------~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  189 (208)
                      ++.+ +..|+||||+|+.. ++.+++++|++.+        ..|.||||+|  .++.+++++|++.|+|++..|..|.||
T Consensus       227 in~~-d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~Tp  303 (477)
T PHA02878        227 TDAR-DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTP  303 (477)
T ss_pred             CCCC-CCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            8777 47899999999976 6899999999653        3689999999  567899999999999999999999999


Q ss_pred             HHHHHHcC-CHHHHHHHhh
Q psy4236         190 RALALLAN-DTELAAYLEK  207 (208)
Q Consensus       190 l~~a~~~~-~~~~~~~L~~  207 (208)
                      +++|+..+ ..+++++|++
T Consensus       304 L~~A~~~~~~~~~~~~li~  322 (477)
T PHA02878        304 LSSAVKQYLCINIGRILIS  322 (477)
T ss_pred             HHHHHHHcCccchHHHHHH
Confidence            99999854 4566666653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.9e-28  Score=175.47  Aligned_cols=166  Identities=14%  Similarity=0.120  Sum_probs=144.9

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccc------hHHHHHHHHHHcCCCCCcCC-CCCccHHHHH
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN------HFFFQLKDLHSQGYSLLSID-SVGQTALHYG   98 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~d-~~g~t~l~~a   98 (208)
                      .....+||+.|+..|+.+.++.|++.   ++..+..+.+|++.      +..+++++|+++|++++.++ ..|.||||+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            56678899999999999999999986   56678888999752      25799999999999999997 4899999998


Q ss_pred             Hhc---CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHh--hCcHHHHHHHHhc-------CCCCCcHHHH-HHhhCC
Q psy4236          99 SRY---GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAM--FKRRSICWMFLFF-------SSRGQTALHK-AAMFKR  165 (208)
Q Consensus        99 ~~~---g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~l~~~-------~~~~~t~l~~-A~~~~~  165 (208)
                      +..   +..+++++|++.|++  ++.+ +..|.||||+|+.  .++.+++++|++.       +..|.||||. |+..++
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gad--in~~-d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSS--ITEE-DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCC--CCCc-CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCC
Confidence            764   479999999999999  8887 4789999999876  4689999999954       5679999996 566789


Q ss_pred             HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q psy4236         166 RSICCMLVAGGASLTVKDYDSNTPRALALLAN  197 (208)
Q Consensus       166 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  197 (208)
                      .+++++|++.|++++.+|..|.||+++|..++
T Consensus       172 ~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        172 KKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            99999999999999999999999999998875

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=3.8e-28  Score=200.41  Aligned_cols=179  Identities=17%  Similarity=0.081  Sum_probs=152.6

Q ss_pred             hhhchHHHHHHHH--hCCHHHHHHHHHcCCCCcccCCCCCCCccc----h--HHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236          26 LEKTSEGVLKAAR--VGDIKMLKDLHSQGYSLKKIPPKDDHPNLN----H--FFFQLKDLHSQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        26 ~~~~~~~l~~A~~--~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~----~--~~~~~~~l~~~g~~~~~~d~~g~t~l~~   97 (208)
                      +..|.||||.|+.  .++.+++++|+++|++++..+..|.+|++.    +  ..++++.|+++|++++.+|..|+||||+
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~  253 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMT  253 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            4568899999875  468999999999999999999999999752    2  3589999999999999999999999997


Q ss_pred             H-------------------------------------HhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHh--hC
Q psy4236          98 G-------------------------------------SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAM--FK  138 (208)
Q Consensus        98 a-------------------------------------~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~--~~  138 (208)
                      |                                     +..|+.+++++|++.|++  ++.+ +..|+||||+|+.  .+
T Consensus       254 Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd--IN~k-D~~G~TPLH~Aaa~~~~  330 (764)
T PHA02716        254 YIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK--LHYK-DSAGRTCLHQYILRHNI  330 (764)
T ss_pred             HHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc--eecc-CCCCCCHHHHHHHHhCC
Confidence            5                                     345778899999999998  8877 4789999999764  46


Q ss_pred             cHHHHHHHHhc-------CCCCCcHHHHHHh--------------hCCHHHHHHHHhCCCCCcccCCCCCCHHHH----H
Q psy4236         139 RRSICWMFLFF-------SSRGQTALHKAAM--------------FKRRSICCMLVAGGASLTVKDYDSNTPRAL----A  193 (208)
Q Consensus       139 ~~~~~~~l~~~-------~~~~~t~l~~A~~--------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~----a  193 (208)
                      +.+++++|++.       +..|.||||+|+.              .++.+++++|+++|++++.+|..|.||||.    |
T Consensus       331 ~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a  410 (764)
T PHA02716        331 STDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTA  410 (764)
T ss_pred             CchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHH
Confidence            78999999854       5679999999875              368899999999999999999999999993    2


Q ss_pred             HHcCCHHHHHHHhh
Q psy4236         194 LLANDTELAAYLEK  207 (208)
Q Consensus       194 ~~~~~~~~~~~L~~  207 (208)
                      ...++.+++++|++
T Consensus       411 ~n~~~~dIvklLis  424 (764)
T PHA02716        411 QNYMYYDIIDCLIS  424 (764)
T ss_pred             HhcChHHHHHHHHh
Confidence            33578899999875

>KOG0510|consensus

Probab=99.96  E-value=1.2e-28  Score=197.90  Aligned_cols=185  Identities=24%  Similarity=0.214  Sum_probs=154.9

Q ss_pred             hHHHhhhhchHHHHHHHHhCCHHHHHHHHH-----cCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCC--------
Q psy4236          21 DIINILEKTSEGVLKAARVGDIKMLKDLHS-----QGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYS--------   83 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~-----~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~--------   83 (208)
                      +..+.+.+++.|+|.|++.|..++++.++.     ++..+|..++.+.+|++    +++.++++.+++.|..        
T Consensus       179 ~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~  258 (929)
T KOG0510|consen  179 DPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDA  258 (929)
T ss_pred             CCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHH
Confidence            344445556667777777777777777766     56667777777776654    5668899999987764        


Q ss_pred             -------CCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh--------
Q psy4236          84 -------LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF--------  148 (208)
Q Consensus        84 -------~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~--------  148 (208)
                             ++..|.+|+||||+|++.|++++++.|+..|++  ++.+ +.++.||||.|+++|+...++-|++        
T Consensus       259 ~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~--I~~k-n~d~~spLH~AA~yg~~ntv~rLL~~~~~rlln  335 (929)
T KOG0510|consen  259 MQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS--INSK-NKDEESPLHFAAIYGRINTVERLLQESDTRLLN  335 (929)
T ss_pred             HHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc--cccc-CCCCCCchHHHHHcccHHHHHHHHhCcCccccc
Confidence                   355688999999999999999999999999999  7777 6889999999999999999999986        


Q ss_pred             -cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCc---ccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         149 -FSSRGQTALHKAAMFKRRSICCMLVAGGASLT---VKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       149 -~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                       .|-.|.||||.|+..|+..+++.|++.|+...   ..|++|.||||.|+..|+..+++.|+++
T Consensus       336 e~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~  399 (929)
T KOG0510|consen  336 ESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH  399 (929)
T ss_pred             cccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc
Confidence             25669999999999999999999999999988   5699999999999999999999999863

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8.9e-28  Score=201.45  Aligned_cols=180  Identities=24%  Similarity=0.215  Sum_probs=148.4

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chH-----------------------------H
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHF-----------------------------F   71 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~-----------------------------~   71 (208)
                      .+..|.||||.|+..|+.+++++|+++|++++..+..+.+++.    .+.                             .
T Consensus       174 ~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~  253 (682)
T PHA02876        174 KDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDL  253 (682)
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCH
Confidence            3445889999999999999999999999999998888887753    122                             3


Q ss_pred             HHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH-HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhC-cHHHHHHHHhc
Q psy4236          72 FQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK-DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFK-RRSICWMFLFF  149 (208)
Q Consensus        72 ~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~-~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~l~~~  149 (208)
                      +++++|++.|++++..|..|.||||+|+..++. +++++|++.|++  ++.. +..|.||||+|+..| ..+++++|+..
T Consensus       254 ~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad--in~~-d~~g~TpLh~Aa~~g~~~~~v~~Ll~~  330 (682)
T PHA02876        254 ETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD--VNAK-NIKGETPLYLMAKNGYDTENIRTLIML  330 (682)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC--CCCc-CCCCCCHHHHHHHhCCCHHHHHHHHHc
Confidence            345667778888888888999999999998885 588999999988  7777 477999999999988 58888888744


Q ss_pred             -------CCCCCcHHHHHHhh-CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         150 -------SSRGQTALHKAAMF-KRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       150 -------~~~~~t~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                             +..|.||||+|+.. +..++++.|++.|++++.+|..|.||||+|+.+|+.+++++|++
T Consensus       331 gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~  396 (682)
T PHA02876        331 GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLD  396 (682)
T ss_pred             CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                   45688899888875 46778888888888888888888899999888888888888875

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.7e-27  Score=190.16  Aligned_cols=178  Identities=16%  Similarity=0.146  Sum_probs=151.6

Q ss_pred             hchHHHHHHHH--hCCHHHHHHHHHcCCCCcccCCCCCCCccc---------hHHHHHHHHHHcCCCCCcCCCCCccHHH
Q psy4236          28 KTSEGVLKAAR--VGDIKMLKDLHSQGYSLKKIPPKDDHPNLN---------HFFFQLKDLHSQGYSLLSIDSVGQTALH   96 (208)
Q Consensus        28 ~~~~~l~~A~~--~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~g~~~~~~d~~g~t~l~   96 (208)
                      .+.++++.+..  .++.+++++|+++|+++|.++..|.+|++.         +..+++++|+++|++++.+|..|.||||
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh  114 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLY  114 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHH
Confidence            35566665554  448999999999999999999999999752         3478999999999999999999999999


Q ss_pred             HHHhcC---CHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCc---HHHHHHHHhcC--------CCCCcHHHHHHh
Q psy4236          97 YGSRYG---HKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR---RSICWMFLFFS--------SRGQTALHKAAM  162 (208)
Q Consensus        97 ~a~~~g---~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~l~~~~--------~~~~t~l~~A~~  162 (208)
                      +|+..+   +.+++++|++.|++  ++.. +..|.||||+|+..++   .+++++|++.+        ..|.||||.++.
T Consensus       115 ~a~~~~~~~~~~iv~~Ll~~Gad--vn~~-d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~  191 (489)
T PHA02798        115 CLLSNGYINNLEILLFMIENGAD--TTLL-DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFK  191 (489)
T ss_pred             HHHHcCCcChHHHHHHHHHcCCC--cccc-CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHH
Confidence            999875   68999999999999  8877 4789999999999887   99999999663        357899999876


Q ss_pred             h----CCHHHHHHHHhCCCC---------------------------------------CcccCCCCCCHHHHHHHcCCH
Q psy4236         163 F----KRRSICCMLVAGGAS---------------------------------------LTVKDYDSNTPRALALLANDT  199 (208)
Q Consensus       163 ~----~~~~~~~~Ll~~g~~---------------------------------------~~~~~~~g~t~l~~a~~~~~~  199 (208)
                      .    ++.+++++|+++|++                                       ++.+|..|.||||+|+.+|+.
T Consensus       192 ~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~  271 (489)
T PHA02798        192 YNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNR  271 (489)
T ss_pred             hccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcH
Confidence            4    468888888887764                                       445677899999999999999


Q ss_pred             HHHHHHhhC
Q psy4236         200 ELAAYLEKS  208 (208)
Q Consensus       200 ~~~~~L~~~  208 (208)
                      +++++|+++
T Consensus       272 ~~v~~LL~~  280 (489)
T PHA02798        272 KIFEYLLQL  280 (489)
T ss_pred             HHHHHHHHc
Confidence            999999863

>KOG0508|consensus

Probab=99.95  E-value=3.7e-28  Score=184.92  Aligned_cols=182  Identities=25%  Similarity=0.265  Sum_probs=159.1

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHH-cCCCCcccC--------CCCCCCc----cchHHHHHHHHHHcCCCCCcCC
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHS-QGYSLKKIP--------PKDDHPN----LNHFFFQLKDLHSQGYSLLSID   88 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~-~g~~~~~~~--------~~~~~~~----~~~~~~~~~~l~~~g~~~~~~d   88 (208)
                      .......|.+||..|+++|+.+++++|++ .++++....        ..|-+|+    ..++++++|.|+++|+++|...
T Consensus        35 l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT  114 (615)
T KOG0508|consen   35 LIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTT  114 (615)
T ss_pred             HhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccccc
Confidence            44445668899999999999999999999 466665422        2333343    3678999999999999999998


Q ss_pred             CCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHH
Q psy4236          89 SVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAA  161 (208)
Q Consensus        89 ~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~  161 (208)
                      ....|||..||.-|+.+++++|+++|++  +... ++.|.|.|+.||..|+.+++++|+++       +..|+|+||.|+
T Consensus       115 ~TNStPLraACfDG~leivKyLvE~gad--~~Ia-nrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~ca  191 (615)
T KOG0508|consen  115 RTNSTPLRAACFDGHLEIVKYLVEHGAD--PEIA-NRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCA  191 (615)
T ss_pred             ccCCccHHHHHhcchhHHHHHHHHcCCC--Cccc-ccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhh
Confidence            8888999999999999999999999999  7666 68899999999999999999999966       466999999999


Q ss_pred             hhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         162 MFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       162 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      ..|+.+++++|+.+|+.+.... .|.|||..|...|+.+++++|++
T Consensus       192 EsG~vdivq~Ll~~ga~i~~d~-~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  192 ESGSVDIVQLLLKHGAKIDVDG-HGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hcccHHHHHHHHhCCceeeecC-CCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999998654 59999999999999999999974

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.2e-27  Score=198.11  Aligned_cols=177  Identities=21%  Similarity=0.204  Sum_probs=105.1

Q ss_pred             hchHHHHHHHHhCCH-HHHHHHHHcCCCCcccCCCCCCCccc----h-HHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          28 KTSEGVLKAARVGDI-KMLKDLHSQGYSLKKIPPKDDHPNLN----H-FFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~-~~~~~Li~~g~~~~~~~~~~~~~~~~----~-~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      .|.||||.|+..|+. ++++.|+++|++++..+..|.+|++.    + ..++++.|+..|++++..|..|.||||+|+..
T Consensus       272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~  351 (682)
T PHA02876        272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL  351 (682)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence            456666666666664 46666666666666666666666531    1 24556666666666666666666666666654


Q ss_pred             -CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCC-HHHHHHH
Q psy4236         102 -GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKR-RSICCML  172 (208)
Q Consensus       102 -g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~-~~~~~~L  172 (208)
                       +..++++.|++.|++  ++.+ +..|+||||+|+..++.+++++|++.       +..|.||||+|+..+. ..++++|
T Consensus       352 ~~~~~iv~lLl~~gad--in~~-d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~L  428 (682)
T PHA02876        352 DRNKDIVITLLELGAN--VNAR-DYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTL  428 (682)
T ss_pred             CCcHHHHHHHHHcCCC--CccC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHH
Confidence             345566666666665  5555 35566666666666666666666643       2345566666655443 3445666


Q ss_pred             HhCCCCCcccCCCCCCHHHHHHHcC-CHHHHHHHhh
Q psy4236         173 VAGGASLTVKDYDSNTPRALALLAN-DTELAAYLEK  207 (208)
Q Consensus       173 l~~g~~~~~~~~~g~t~l~~a~~~~-~~~~~~~L~~  207 (208)
                      ++.|++++.+|..|+||||+|+..+ +.+++++|++
T Consensus       429 l~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~  464 (682)
T PHA02876        429 IDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD  464 (682)
T ss_pred             HhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHH
Confidence            6666666666666666666666544 4566666654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=6.4e-27  Score=189.63  Aligned_cols=178  Identities=17%  Similarity=0.156  Sum_probs=148.3

Q ss_pred             hhchHHHHHHHHhC--CHHHHHHHHHcCCCCcccCCCCCCCccc----------hHHHHHHHHHHcCCCCCcCCCCCccH
Q psy4236          27 EKTSEGVLKAARVG--DIKMLKDLHSQGYSLKKIPPKDDHPNLN----------HFFFQLKDLHSQGYSLLSIDSVGQTA   94 (208)
Q Consensus        27 ~~~~~~l~~A~~~g--~~~~~~~Li~~g~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~g~~~~~~d~~g~t~   94 (208)
                      ..|.++++.++..+  +.++++.|+++|+++|..+ .+.+|++.          +..+++++|+++|++++.+|..|.||
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tp  111 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSP  111 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            45778887766543  7899999999999999876 45777642          24689999999999999999999999


Q ss_pred             HHHHHhc---CCHHHHHHHHHcCCCCcc-ccCCCCCCccHHHHHHhh--CcHHHHHHHHhc--------CCCCCcHHHHH
Q psy4236          95 LHYGSRY---GHKDVVKYIIACAPSSIL-NMQDNDKGQTALHKAAMF--KRRSICWMFLFF--------SSRGQTALHKA  160 (208)
Q Consensus        95 l~~a~~~---g~~~~~~~ll~~g~~~~~-~~~~~~~~~t~l~~a~~~--~~~~~~~~l~~~--------~~~~~t~l~~A  160 (208)
                      ||.|+..   ++.+++++|++.|++  + +.. +..|+||||+|+..  ++.+++++|++.        +..|.||||.|
T Consensus       112 L~~a~~~~~~~~~eiv~~Ll~~Gad--in~~~-d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a  188 (494)
T PHA02989        112 IVCFIYNSNINNCDMLRFLLSKGIN--VNDVK-NSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIY  188 (494)
T ss_pred             HHHHHHhcccCcHHHHHHHHHCCCC--ccccc-CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHH
Confidence            9988754   679999999999999  7 555 47899999998764  688999999954        35689999999


Q ss_pred             HhhC----CHHHHHHHHhCCCCCcc--------------------------------------cCCCCCCHHHHHHHcCC
Q psy4236         161 AMFK----RRSICCMLVAGGASLTV--------------------------------------KDYDSNTPRALALLAND  198 (208)
Q Consensus       161 ~~~~----~~~~~~~Ll~~g~~~~~--------------------------------------~~~~g~t~l~~a~~~~~  198 (208)
                      +..+    +.+++++|++.|++++.                                      +|..|+||||+|+..|+
T Consensus       189 ~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~  268 (494)
T PHA02989        189 LRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDN  268 (494)
T ss_pred             HhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcC
Confidence            7654    88999999998887654                                      44569999999999999


Q ss_pred             HHHHHHHhhC
Q psy4236         199 TELAAYLEKS  208 (208)
Q Consensus       199 ~~~~~~L~~~  208 (208)
                      .+++++|+++
T Consensus       269 ~~~v~~LL~~  278 (494)
T PHA02989        269 YEAFNYLLKL  278 (494)
T ss_pred             HHHHHHHHHc
Confidence            9999999863

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.8e-27  Score=181.91  Aligned_cols=170  Identities=16%  Similarity=0.079  Sum_probs=147.9

Q ss_pred             HHHHhCCHHHHHHHHHcCCCCc------ccCCCCCCCcc------chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcC
Q psy4236          35 KAARVGDIKMLKDLHSQGYSLK------KIPPKDDHPNL------NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYG  102 (208)
Q Consensus        35 ~A~~~g~~~~~~~Li~~g~~~~------~~~~~~~~~~~------~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g  102 (208)
                      .|+..+..++++.|+++|++++      .++...+++++      .+..+++++|+++|++++..+  +.||+|.|+..+
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~--~~t~lh~A~~~~  160 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIE--CLNAYFRGICKK  160 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCC--CCCHHHHHHHcC
Confidence            8999999999999999999999      66666777753      467899999999999998854  479999999999


Q ss_pred             CHHHHHHHHHcCCCCccccCC----CCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHH
Q psy4236         103 HKDVVKYIIACAPSSILNMQD----NDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCM  171 (208)
Q Consensus       103 ~~~~~~~ll~~g~~~~~~~~~----~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~  171 (208)
                      +.+++++|+++|++. .+..+    ...+.+++|.+...+..+++++|++.       +..|.||||+|+..|+.+++++
T Consensus       161 ~~eIVk~Lls~Ga~~-~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVel  239 (437)
T PHA02795        161 ESSVVEFILNCGIPD-ENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSW  239 (437)
T ss_pred             cHHHHHHHHhcCCcc-cccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999742 21110    02367899999999999999999955       5679999999999999999999


Q ss_pred             HHhCCCCCcccCCCCCCHHHHHHHcCC--------HHHHHHHhh
Q psy4236         172 LVAGGASLTVKDYDSNTPRALALLAND--------TELAAYLEK  207 (208)
Q Consensus       172 Ll~~g~~~~~~~~~g~t~l~~a~~~~~--------~~~~~~L~~  207 (208)
                      |+++|++++.++..|.||||+|+.+|+        .+++++|++
T Consensus       240 LL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~  283 (437)
T PHA02795        240 LLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR  283 (437)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh
Confidence            999999999999999999999999984        699999875

>KOG0510|consensus

Probab=99.95  E-value=4.8e-27  Score=188.77  Aligned_cols=176  Identities=23%  Similarity=0.192  Sum_probs=130.6

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK  104 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~  104 (208)
                      +.+|+|+|+..|+.++++.|+++|+|+|..+..+.+|++    .+..+..+.|+..|+++-..|.+|++|+|.|++.|..
T Consensus       121 ~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~  200 (929)
T KOG0510|consen  121 KNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSK  200 (929)
T ss_pred             ccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcch
Confidence            344666666666666666666666666666666666653    3344555666666666666666666666666666666


Q ss_pred             HHHHHHHH-----cCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH----------------------hcCCCCCcHH
Q psy4236         105 DVVKYIIA-----CAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL----------------------FFSSRGQTAL  157 (208)
Q Consensus       105 ~~~~~ll~-----~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~----------------------~~~~~~~t~l  157 (208)
                      ++++.++.     .+..  ++.. +..+.||||.|+..|+.++++.++                      +.|..|.|||
T Consensus       201 e~mEi~l~~~g~~r~~~--in~~-~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpL  277 (929)
T KOG0510|consen  201 ECMEIFLPEHGYERQTH--INFD-NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPL  277 (929)
T ss_pred             hhhhhhhccccchhhcc--cccc-cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchH
Confidence            66666665     2333  4444 456788888888888888888776                      1267799999


Q ss_pred             HHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         158 HKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       158 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      |+|+..|+++.++.|+..|++++.++.++.||||.|+.+|+...++-|++
T Consensus       278 H~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  278 HYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             HHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999886

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.7e-26  Score=188.85  Aligned_cols=179  Identities=13%  Similarity=0.044  Sum_probs=149.5

Q ss_pred             HhhhhchHHHHHHHHh---CCHHHHHHHHHcCCCCcccCCCCCCCcc----chH----HHHHHHHHHcCCCCCcCCCCCc
Q psy4236          24 NILEKTSEGVLKAARV---GDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHF----FFQLKDLHSQGYSLLSIDSVGQ   92 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~---g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~----~~~~~~l~~~g~~~~~~d~~g~   92 (208)
                      ..+..|.||||.|++.   |+.++++.|+++|++++..+..|.+|++    .++    .++++.|++.+...+..+.  .
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~  104 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--N  104 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--c
Confidence            4466789999998665   8899999999999999999999999976    222    3567888887655555443  3


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHH--hhCcHHHHHHHHhcCCC----------C-------
Q psy4236          93 TALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA--MFKRRSICWMFLFFSSR----------G-------  153 (208)
Q Consensus        93 t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~l~~~~~~----------~-------  153 (208)
                      .+++.|+..|+.+++++|+++|++  ++.+ +..|.||||.++  ..++.+++++|++.+.+          |       
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gad--in~~-d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~  181 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFD--LSVK-CENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQ  181 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCC--CCcc-CCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccc
Confidence            667788999999999999999999  8877 478999999643  57899999999966432          2       


Q ss_pred             ----CcHHHHHHh-----------hCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCH--HHHHHHhh
Q psy4236         154 ----QTALHKAAM-----------FKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT--ELAAYLEK  207 (208)
Q Consensus       154 ----~t~l~~A~~-----------~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~--~~~~~L~~  207 (208)
                          .||||+|+.           .++.+++++|+++|+|++..|.+|.||||+|+.+|+.  +++++|++
T Consensus       182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             ccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence                499999986           4689999999999999999999999999999999985  79999875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=3.7e-25  Score=188.42  Aligned_cols=163  Identities=19%  Similarity=0.172  Sum_probs=123.3

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK  104 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~  104 (208)
                      ..++|+.||..|+.++++.|+++|+++|..+..|.+|++    .++.++++.|+++|++++.+|..|.||||+|+..|+.
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~  604 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH  604 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence            346788888888888888888888888888888877764    5567778888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCC
Q psy4236         105 DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGA  177 (208)
Q Consensus       105 ~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~  177 (208)
                      +++++|++.++.  .+   ...+.++||.|+..|+.+++++|++.       +..|.||||.|+..|+.+++++|+++|+
T Consensus       605 ~iv~~L~~~~~~--~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        605 KIFRILYHFASI--SD---PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             HHHHHHHhcCcc--cC---cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            888888776654  22   13456788888888888888877743       5667788888888888888888888888


Q ss_pred             CCcccCCCC-CCHHHHHHHc
Q psy4236         178 SLTVKDYDS-NTPRALALLA  196 (208)
Q Consensus       178 ~~~~~~~~g-~t~l~~a~~~  196 (208)
                      |++..|..| .+|.+++...
T Consensus       680 dv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        680 DVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             CCCCCCCCCCCCHHHHHHHH
Confidence            888777777 7777766443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.4e-24  Score=174.32  Aligned_cols=184  Identities=15%  Similarity=0.025  Sum_probs=149.2

Q ss_pred             HhhhhchHHHHHHHHhC---CHHHHHHHHHcCCCCcccCCCCCCCccc------hHHHHHHHHHHcCCC--CCcCCCCCc
Q psy4236          24 NILEKTSEGVLKAARVG---DIKMLKDLHSQGYSLKKIPPKDDHPNLN------HFFFQLKDLHSQGYS--LLSIDSVGQ   92 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g---~~~~~~~Li~~g~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~--~~~~d~~g~   92 (208)
                      ..+..|.||||+|+..|   +.+++++|+++|++++.++..|.+|++.      +..+++++|++.|++  ++..|..+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            44567899999999997   5999999999999999999999999862      268999999999664  477777788


Q ss_pred             cHHHHHHh--cCCHHHHHHHHH-cCCCCccc--cCCCCCCccHHHHHHhhCcHHHHHHHHhcCCC--------------C
Q psy4236          93 TALHYGSR--YGHKDVVKYIIA-CAPSSILN--MQDNDKGQTALHKAAMFKRRSICWMFLFFSSR--------------G  153 (208)
Q Consensus        93 t~l~~a~~--~g~~~~~~~ll~-~g~~~~~~--~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~--------------~  153 (208)
                      +|||.++.  .++.+++++|++ .+.++...  ..++..|.+|++++...++.+++++|++.+.+              .
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~  195 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDR  195 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCc
Confidence            99988877  889999999997 55562222  11123688999999999999999999965322              1


Q ss_pred             -CcHHHHH------HhhCCHHHHHHHHhCCCCCcccCCCCCCHHHH--HHHcCCHHHHHHHhh
Q psy4236         154 -QTALHKA------AMFKRRSICCMLVAGGASLTVKDYDSNTPRAL--ALLANDTELAAYLEK  207 (208)
Q Consensus       154 -~t~l~~A------~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~--a~~~~~~~~~~~L~~  207 (208)
                       .|.||++      ...++.+++++|+++|++++.+|..|.||||+  +...|+.+++++|++
T Consensus       196 c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        196 CKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence             2334433      45578999999999999999999999999995  455677999999987

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=3e-24  Score=174.65  Aligned_cols=186  Identities=16%  Similarity=0.088  Sum_probs=147.9

Q ss_pred             hHHHhhhhchHHHHH--HHHhCCHHHHHHHHH--------------------------------cCCCCcc---------
Q psy4236          21 DIINILEKTSEGVLK--AARVGDIKMLKDLHS--------------------------------QGYSLKK---------   57 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~--A~~~g~~~~~~~Li~--------------------------------~g~~~~~---------   57 (208)
                      ++...+..|.||||.  |...|+.|+++.|++                                +|+|+..         
T Consensus       227 dIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  306 (672)
T PHA02730        227 SIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRH  306 (672)
T ss_pred             CCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccC
Confidence            455566778999985  555677999999999                                7888866         


Q ss_pred             -----------cCCCCCC---------------------Cc----c-c--hHHHHHHHHHHcCCCCCcCCCCCccHHHHH
Q psy4236          58 -----------IPPKDDH---------------------PN----L-N--HFFFQLKDLHSQGYSLLSIDSVGQTALHYG   98 (208)
Q Consensus        58 -----------~~~~~~~---------------------~~----~-~--~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a   98 (208)
                                 .+..+..                     .+    . .  -..++++.|+++|++++.. ..|.||||+|
T Consensus       307 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~A  385 (672)
T PHA02730        307 TLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDY  385 (672)
T ss_pred             cchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHH
Confidence                       2223321                     00    1 1  2478899999999999985 7899999999


Q ss_pred             HhcCC----HHHHHHHHHcCCCCccccCCCCCCccHHHH---HHhhC---------cHHHHHHHHhc-------CCCCCc
Q psy4236          99 SRYGH----KDVVKYIIACAPSSILNMQDNDKGQTALHK---AAMFK---------RRSICWMFLFF-------SSRGQT  155 (208)
Q Consensus        99 ~~~g~----~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~---a~~~~---------~~~~~~~l~~~-------~~~~~t  155 (208)
                      +..+.    .+++++|+++|++..++.++ ..|.||||.   +...+         ..+++++|++.       +..|.|
T Consensus       386 a~~nnn~i~~eIvelLIs~Ga~~dIN~kd-~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~T  464 (672)
T PHA02730        386 FVNNNNIVDVNVVRFIVENNGHMAINHVS-NNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKT  464 (672)
T ss_pred             HHHcCCcchHHHHHHHHHcCCCccccccc-cCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCC
Confidence            88875    89999999999854477774 679999984   33222         23568999854       567999


Q ss_pred             HHHHHHhhCCHHHHHHHHhCCCCCcccCC-CCCCHHHHHHHc--CCHHHHHHHhhC
Q psy4236         156 ALHKAAMFKRRSICCMLVAGGASLTVKDY-DSNTPRALALLA--NDTELAAYLEKS  208 (208)
Q Consensus       156 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~a~~~--~~~~~~~~L~~~  208 (208)
                      |||+|+..++.+++++|+.+|++++..+. .|.||+|+|+.+  ++.+++++|++.
T Consensus       465 PLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~  520 (672)
T PHA02730        465 LLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSY  520 (672)
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHc
Confidence            99999999999999999999999999997 599999999874  789999999863

>KOG0502|consensus

Probab=99.92  E-value=8.7e-25  Score=151.76  Aligned_cols=179  Identities=18%  Similarity=0.096  Sum_probs=153.0

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHH-HHH-HHHcCCCCCcCCCCCccHHHHHH
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQ-LKD-LHSQGYSLLSIDSVGQTALHYGS   99 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~-~~~-l~~~g~~~~~~d~~g~t~l~~a~   99 (208)
                      +...+++|.++++.|+.+|+...+..++..|...|.++.++.++++...... ++. +......+|..|+.|.|||.+|+
T Consensus        89 ~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAa  168 (296)
T KOG0502|consen   89 IDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAA  168 (296)
T ss_pred             CCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHH
Confidence            3344566888999999999999999999999999999999999876443221 221 22234578999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHH
Q psy4236         100 RYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCML  172 (208)
Q Consensus       100 ~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~L  172 (208)
                      .+|+..+|++||+.|++  +...+ ....++|..|++.|..+++++|+.+       |-+|.|||.+|+..++..+++.|
T Consensus       169 a~G~i~vV~fLL~~GAd--p~~lg-k~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~L  245 (296)
T KOG0502|consen  169 AKGHIPVVQFLLNSGAD--PDALG-KYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESL  245 (296)
T ss_pred             hcCchHHHHHHHHcCCC--hhhhh-hhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHH
Confidence            99999999999999999  55553 5678999999999999999999965       57799999999999999999999


Q ss_pred             HhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q psy4236         173 VAGGASLTVKDYDSNTPRALALLANDTELAAY  204 (208)
Q Consensus       173 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  204 (208)
                      ++.|+|++..+..|.++++.|+..|.- +|+-
T Consensus       246 l~sGAd~t~e~dsGy~~mdlAValGyr-~Vqq  276 (296)
T KOG0502|consen  246 LNSGADVTQEDDSGYWIMDLAVALGYR-IVQQ  276 (296)
T ss_pred             HhcCCCcccccccCCcHHHHHHHhhhH-HHHH
Confidence            999999999999999999999999987 4443

>KOG4177|consensus

Probab=99.92  E-value=4.4e-24  Score=180.25  Aligned_cols=184  Identities=20%  Similarity=0.198  Sum_probs=167.5

Q ss_pred             hHHHhhhhchHHHHHHHHhC-CHHHHHHHHHcCCCCcccCCCCCCCc----cchHHHHHHHHHHcCCCCCcCCCCCccHH
Q psy4236          21 DIINILEKTSEGVLKAARVG-DIKMLKDLHSQGYSLKKIPPKDDHPN----LNHFFFQLKDLHSQGYSLLSIDSVGQTAL   95 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g-~~~~~~~Li~~g~~~~~~~~~~~~~~----~~~~~~~~~~l~~~g~~~~~~d~~g~t~l   95 (208)
                      +..-....|.|++|.|+..| ..+....+.++|+++|.....|.+++    ..++.++++.+++.+...+.....+.+++
T Consensus       432 ~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~l  511 (1143)
T KOG4177|consen  432 SPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPL  511 (1143)
T ss_pred             ChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchh
Confidence            34455666899999999999 89999999999999999999999975    46788999999999988888888999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHH
Q psy4236          96 HYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSI  168 (208)
Q Consensus        96 ~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~  168 (208)
                      |.+...+...+.+.+++.|++  .+.+ ..+++||||.||..|+..+|++|+++       ++.|+||||.|+..|+.++
T Consensus       512 hla~~~~~v~~~~~l~~~ga~--v~~~-~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i  588 (1143)
T KOG4177|consen  512 HLAADEDTVKVAKILLEHGAN--VDLR-TGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDI  588 (1143)
T ss_pred             hhhhhhhhHHHHHHHhhcCCc--eehh-cccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHH
Confidence            999999999999999999998  7777 47899999999999999999999955       5789999999999999999


Q ss_pred             HHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         169 CCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       169 ~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +++|+++|+++|..+.+|.|||+.|+..|+.++++.|+.
T Consensus       589 ~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~  627 (1143)
T KOG4177|consen  589 AELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKV  627 (1143)
T ss_pred             HHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHh
Confidence            999999999999999999999999999999999998863

>KOG4177|consensus

Probab=99.91  E-value=5e-25  Score=185.88  Aligned_cols=181  Identities=23%  Similarity=0.221  Sum_probs=155.3

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      -..++.+|+|.|+..|..+.++.++.+|++++.....|.++++    .....+++.++.+|++++..+..|.||+|+|+.
T Consensus       370 a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~  449 (1143)
T KOG4177|consen  370 AEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAK  449 (1143)
T ss_pred             ccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhh
Confidence            3455777999999999999999999999999998888888865    344667777888888888888888888888888


Q ss_pred             cC-CHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc------------------------------
Q psy4236         101 YG-HKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF------------------------------  149 (208)
Q Consensus       101 ~g-~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~------------------------------  149 (208)
                      .| ..+....+++.|.+  ++.. ...|.||||.|...|+.+++..+++.                              
T Consensus       450 ~g~~~~~~~~l~~~g~~--~n~~-s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l  526 (1143)
T KOG4177|consen  450 KGRYLQIARLLLQYGAD--PNAV-SKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKIL  526 (1143)
T ss_pred             cccHhhhhhhHhhcCCC--cchh-ccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHH
Confidence            88 77888888888877  7776 47788888888888888888777621                              


Q ss_pred             ----------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         150 ----------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       150 ----------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                                +.++.||||.|+.+|++++|++|+++|+|++.+++.|+||||.|+..|+.+|+++|+++
T Consensus       527 ~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~  595 (1143)
T KOG4177|consen  527 LEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH  595 (1143)
T ss_pred             hhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHc
Confidence                      35688999999999999999999999999999999999999999999999999999874

>PHA02795 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=163.97  Aligned_cols=159  Identities=13%  Similarity=0.023  Sum_probs=141.4

Q ss_pred             HHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCC------cCCCCCccHHHHHHh--cCCHHHHHHHHHcCC
Q psy4236          44 MLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLL------SIDSVGQTALHYGSR--YGHKDVVKYIIACAP  115 (208)
Q Consensus        44 ~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~------~~d~~g~t~l~~a~~--~g~~~~~~~ll~~g~  115 (208)
                      .-++|+++|+++|.....+ .+......+++++|+++|++++      .++..++|+||+++.  .|+.+++++|+++|+
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GA  142 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGA  142 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCC
Confidence            4578999999999877666 4455677899999999999998      788889999999999  899999999999999


Q ss_pred             CCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCC-------------CCCcHHHHHHhhCCHHHHHHHHhCCCCCccc
Q psy4236         116 SSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSS-------------RGQTALHKAAMFKRRSICCMLVAGGASLTVK  182 (208)
Q Consensus       116 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~-------------~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  182 (208)
                      +  ++..   .+.||+|.|+..++.+++++|++.+.             .+.+++|.|+..++.+++++|+++|++++.+
T Consensus       143 D--In~~---~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~k  217 (437)
T PHA02795        143 V--IYKI---ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQL  217 (437)
T ss_pred             C--CCCC---CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcC
Confidence            9  7654   35899999999999999999997642             2567889999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         183 DYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       183 ~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      |..|.||||+|+.+|+.+++++|++.
T Consensus       218 D~~G~TpLh~Aa~~g~~eiVelLL~~  243 (437)
T PHA02795        218 DAGGRTLLYRAIYAGYIDLVSWLLEN  243 (437)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            99999999999999999999999863

>KOG0508|consensus

Probab=99.91  E-value=6.4e-24  Score=162.04  Aligned_cols=145  Identities=23%  Similarity=0.295  Sum_probs=135.3

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCc----cchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcC
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPN----LNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYG  102 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~----~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g  102 (208)
                      ++|-+||..|+-.|+.++|+.|+++|+++|.......+|+    .-++++++|+|+++|+|++..+..|.|.|++||..|
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykG  161 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKG  161 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccC
Confidence            4466699999999999999999999999999999888886    367899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh------cCCCCCcHHHHHHhhCCHHHHHHHHh
Q psy4236         103 HKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF------FSSRGQTALHKAAMFKRRSICCMLVA  174 (208)
Q Consensus       103 ~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~------~~~~~~t~l~~A~~~~~~~~~~~Ll~  174 (208)
                      +.+++++|++.|++  ++.+ ...|+|+||.+++.|+.+++++|+.      .+.+|.|||..|+..|..++|++|+.
T Consensus       162 h~~I~qyLle~gAD--vn~k-s~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  162 HVDIAQYLLEQGAD--VNAK-SYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             chHHHHHHHHhCCC--cchh-cccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999999  9988 4889999999999999999999995      46789999999999999999999996

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=7.5e-23  Score=142.82  Aligned_cols=145  Identities=21%  Similarity=0.254  Sum_probs=121.2

Q ss_pred             CccchhHHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHH
Q psy4236          16 SKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTAL   95 (208)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l   95 (208)
                      ....++..+.+.++.+++|.||+.|+.+.+..++                         ++|++.|..++.+|..|+|||
T Consensus         7 ~~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~-------------------------~~l~~~g~~~~~~d~~g~t~L   61 (166)
T PHA02743          7 AGNNLGAVEIDEDEQNTFLRICRTGNIYELMEVA-------------------------PFISGDGHLLHRYDHHGRQCT   61 (166)
T ss_pred             cccchHHhhhccCCCcHHHHHHHcCCHHHHHHHH-------------------------HHHhhcchhhhccCCCCCcHH
Confidence            3455677788888899999999999997666533                         336677777888899999999


Q ss_pred             HHHHhcCCHHH---HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh-c-------CCCCCcHHHHHHhhC
Q psy4236          96 HYGSRYGHKDV---VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF-F-------SSRGQTALHKAAMFK  164 (208)
Q Consensus        96 ~~a~~~g~~~~---~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-~-------~~~~~t~l~~A~~~~  164 (208)
                      |+|+..|+.+.   +++|++.|++  ++.++...|+||||+|+..++.+++++|++ .       +..|.||||+|+..+
T Consensus        62 h~Aa~~g~~~~~~~i~~Ll~~Gad--in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~  139 (166)
T PHA02743         62 HMVAWYDRANAVMKIELLVNMGAD--INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMR  139 (166)
T ss_pred             HHHHHhCccCHHHHHHHHHHcCCC--CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcC
Confidence            99999988654   7899999998  777643479999999999999999999984 2       457899999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCC
Q psy4236         165 RRSICCMLVAGGASLTVKDYDSN  187 (208)
Q Consensus       165 ~~~~~~~Ll~~g~~~~~~~~~g~  187 (208)
                      +.+++++|+..|++++.++..|.
T Consensus       140 ~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        140 DRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CHHHHHHHHHcCCCCCCcccCCc
Confidence            99999999999999999887764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=6.2e-23  Score=169.82  Aligned_cols=182  Identities=14%  Similarity=0.070  Sum_probs=139.6

Q ss_pred             HhhhhchHHHHHHHHhCCH----HHHHHHHHcCCCCcccCCC--CCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236          24 NILEKTSEGVLKAARVGDI----KMLKDLHSQGYSLKKIPPK--DDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~----~~~~~Li~~g~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~   97 (208)
                      ..+..|.||||+|+..|+.    ++++.|++++...+..+..  ...+...+..+++++|+++|++++.+|..|.||||.
T Consensus        63 ~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~  142 (661)
T PHA02917         63 HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIEN  142 (661)
T ss_pred             ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHH
Confidence            3445578999999999984    4567888875444443221  011233557899999999999999999999999995


Q ss_pred             H--HhcCCHHHHHHHHHcCCCCccccCC--CCCC-----------ccHHHHHHh-----------hCcHHHHHHHHhc--
Q psy4236          98 G--SRYGHKDVVKYIIACAPSSILNMQD--NDKG-----------QTALHKAAM-----------FKRRSICWMFLFF--  149 (208)
Q Consensus        98 a--~~~g~~~~~~~ll~~g~~~~~~~~~--~~~~-----------~t~l~~a~~-----------~~~~~~~~~l~~~--  149 (208)
                      +  +..|+.+++++|++.|++  ++..+  +..|           .||||+|+.           .++.+++++|++.  
T Consensus       143 ~~a~~~~~~eivklLi~~Ga~--vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga  220 (661)
T PHA02917        143 YVMTDDPVPEIIDLFIENGCS--VLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI  220 (661)
T ss_pred             HHHccCCCHHHHHHHHHcCCC--ccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC
Confidence            4  357899999999999998  65432  1223           599999986           4588999999954  


Q ss_pred             -----CCCCCcHHHHHHhhCCH--HHHHHHHhCCCCCc----ccCCCCCCHHHHHHH-------c--CCHHHHHHHhhC
Q psy4236         150 -----SSRGQTALHKAAMFKRR--SICCMLVAGGASLT----VKDYDSNTPRALALL-------A--NDTELAAYLEKS  208 (208)
Q Consensus       150 -----~~~~~t~l~~A~~~~~~--~~~~~Ll~~g~~~~----~~~~~g~t~l~~a~~-------~--~~~~~~~~L~~~  208 (208)
                           +..|.||||+|+..|+.  +++++|++ |++++    ..+..|.+|+++|+.       +  .+.+++++|+++
T Consensus       221 dvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~  298 (661)
T PHA02917        221 KPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLEN  298 (661)
T ss_pred             CcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhC
Confidence                 57899999999999985  79999985 88775    456678888998883       1  277999999864

>PHA02792 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.1e-21  Score=158.25  Aligned_cols=118  Identities=21%  Similarity=0.129  Sum_probs=99.1

Q ss_pred             hhchHHHHH-HHHhCCHHHHHHHHHcCCCCcccCCCCCCCc-----cchHHHHHHHHHHcCCCC----------------
Q psy4236          27 EKTSEGVLK-AARVGDIKMLKDLHSQGYSLKKIPPKDDHPN-----LNHFFFQLKDLHSQGYSL----------------   84 (208)
Q Consensus        27 ~~~~~~l~~-A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g~~~----------------   84 (208)
                      ..+.++++. |...|+.|++++|+++|+++|.++..+.++.     ..++.+++++|+++|+++                
T Consensus        69 ~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~  148 (631)
T PHA02792         69 INDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQIT  148 (631)
T ss_pred             cCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcc
Confidence            445567754 5578899999999999999999998877773     257899999999999863                


Q ss_pred             --------------------CcCCCCCccHHHHHHhcC-------CHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhh
Q psy4236          85 --------------------LSIDSVGQTALHYGSRYG-------HKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMF  137 (208)
Q Consensus        85 --------------------~~~d~~g~t~l~~a~~~g-------~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~  137 (208)
                                          |..|..|.||||+++..+       ..++++.|+++|++  ++..+ ..|.||||+|+..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~--~~~~d-~~g~t~l~~~~~~  225 (631)
T PHA02792        149 RAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE--MRYYT-YREHTTLYYYVDK  225 (631)
T ss_pred             cccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC--cCccC-CCCChHHHHHHHc
Confidence                                234557999999999998       89999999999998  87774 6799999999998


Q ss_pred             C--cHHHHHHHH
Q psy4236         138 K--RRSICWMFL  147 (208)
Q Consensus       138 ~--~~~~~~~l~  147 (208)
                      .  +.+++++|+
T Consensus       226 ~~i~~ei~~~L~  237 (631)
T PHA02792        226 CDIKREIFDALF  237 (631)
T ss_pred             ccchHHHHHHHH
Confidence            8  788888876

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.89  E-value=7e-22  Score=142.91  Aligned_cols=135  Identities=19%  Similarity=0.253  Sum_probs=115.8

Q ss_pred             chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcC--CHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhh---CcHHH
Q psy4236          68 NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYG--HKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMF---KRRSI  142 (208)
Q Consensus        68 ~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g--~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~---~~~~~  142 (208)
                      .+..++++.|++.   ++..+..|.||||+|+..+  +.+++++|++.|++  ++..++..|.||||+|+..   +..++
T Consensus        31 ~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad--vn~~~~~~g~TpLh~a~~~~~~~~~ei  105 (209)
T PHA02859         31 KDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD--VNFKTRDNNLSALHHYLSFNKNVEPEI  105 (209)
T ss_pred             hCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC--CCccCCCCCCCHHHHHHHhCccccHHH
Confidence            4567889999875   5677889999999999854  89999999999999  7776435799999998764   47899


Q ss_pred             HHHHHhc-------CCCCCcHHHHHHh--hCCHHHHHHHHhCCCCCcccCCCCCCHHHH-HHHcCCHHHHHHHhh
Q psy4236         143 CWMFLFF-------SSRGQTALHKAAM--FKRRSICCMLVAGGASLTVKDYDSNTPRAL-ALLANDTELAAYLEK  207 (208)
Q Consensus       143 ~~~l~~~-------~~~~~t~l~~A~~--~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~-a~~~~~~~~~~~L~~  207 (208)
                      +++|++.       +..|.||||.|+.  .++.+++++|++.|++++.+|..|.||+|. |...++.+++++|++
T Consensus       106 v~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~  180 (209)
T PHA02859        106 LKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTS  180 (209)
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHH
Confidence            9999954       5779999999876  468999999999999999999999999995 567889999999986

>KOG0505|consensus

Probab=99.89  E-value=8.5e-23  Score=157.92  Aligned_cols=176  Identities=24%  Similarity=0.252  Sum_probs=147.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccc----hHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236          30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN----HFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD  105 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~----~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~  105 (208)
                      .-.+..|+..|+.+-++.|+..|++++..+..|.++++.    .+.+|+++|+++|++|+..|..++||+|.|+.+|+..
T Consensus        41 sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   41 SAVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             hHHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence            347888999999999999999999999999999999864    3578999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH---------------------------------hcCCC
Q psy4236         106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL---------------------------------FFSSR  152 (208)
Q Consensus       106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~---------------------------------~~~~~  152 (208)
                      ++++++..|++  +... +..|..|+..+..--...+...-.                                 .....
T Consensus       121 i~~~li~~gA~--~~av-Nsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~r  197 (527)
T KOG0505|consen  121 IVEYLIQHGAN--LLAV-NSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHAR  197 (527)
T ss_pred             HHHHHHHhhhh--hhhc-cCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccc
Confidence            99999999988  5555 466666655433211111111100                                 11345


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       153 ~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      |.|.||.|+..|+.++.++|+.+|.+++.+|.+|++|||.|+..|..++.++|.++
T Consensus       198 G~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~  253 (527)
T KOG0505|consen  198 GATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEH  253 (527)
T ss_pred             cchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999988753

>PHA02792 ankyrin-like protein; Provisional

Probab=99.88  E-value=2.8e-21  Score=156.05  Aligned_cols=166  Identities=13%  Similarity=0.090  Sum_probs=135.4

Q ss_pred             hhhhchHHHHHHHHhC-------CHHHHHHHHHcCCCCcccCCCCCCCccchH---------------------------
Q psy4236          25 ILEKTSEGVLKAARVG-------DIKMLKDLHSQGYSLKKIPPKDDHPNLNHF---------------------------   70 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g-------~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~---------------------------   70 (208)
                      .+..|.||||.|+..+       +.++++.|+++|++++..+..|.+|++...                           
T Consensus       171 ~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l  250 (631)
T PHA02792        171 DDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNIL  250 (631)
T ss_pred             CCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHH
Confidence            3445889999999999       899999999999999998877776642000                           


Q ss_pred             ----------------------------------------------------------------------HHHHHHHHHc
Q psy4236          71 ----------------------------------------------------------------------FFQLKDLHSQ   80 (208)
Q Consensus        71 ----------------------------------------------------------------------~~~~~~l~~~   80 (208)
                                                                                            .+++++|+++
T Consensus       251 ~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~  330 (631)
T PHA02792        251 SNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE  330 (631)
T ss_pred             HHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC
Confidence                                                                                  2257888888


Q ss_pred             CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCC--CccHHHHHHhhCcH---HHHHHHHhc------
Q psy4236          81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDK--GQTALHKAAMFKRR---SICWMFLFF------  149 (208)
Q Consensus        81 g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~--~~t~l~~a~~~~~~---~~~~~l~~~------  149 (208)
                      |+++..  .....+++.|+..|+.+++++|+++|++  ++.++ ..  +.||||+|+.....   ++++++++.      
T Consensus       331 Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GAD--IN~kD-~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~  405 (631)
T PHA02792        331 GATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNV--VVEDD-DNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINK  405 (631)
T ss_pred             CCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCc--hhhhc-CCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccc
Confidence            888752  2345678999999999999999999999  77664 33  56999998776554   356777643      


Q ss_pred             -CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHH
Q psy4236         150 -SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALL  195 (208)
Q Consensus       150 -~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~  195 (208)
                       +..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+.
T Consensus       406 kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        406 IDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence             5679999999999999999999999999999999999999999976

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=1.3e-21  Score=137.16  Aligned_cols=120  Identities=27%  Similarity=0.340  Sum_probs=105.4

Q ss_pred             CcCCCCCccHHHHHHhcCCHHHHHHHHHc------CCCCccccCCCCCCccHHHHHHhhCc----HHHHHHHHhc-----
Q psy4236          85 LSIDSVGQTALHYGSRYGHKDVVKYIIAC------APSSILNMQDNDKGQTALHKAAMFKR----RSICWMFLFF-----  149 (208)
Q Consensus        85 ~~~d~~g~t~l~~a~~~g~~~~~~~ll~~------g~~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~l~~~-----  149 (208)
                      +.++..|.||||+|+..|+.++++.|+..      |++  ++.+ +..|+||||+|+..++    .+++++|++.     
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~--in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin   91 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA--LNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN   91 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh--hhcc-CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Confidence            35778999999999999999999998642      455  6767 4789999999999998    5788888743     


Q ss_pred             --C-CCCCcHHHHHHhhCCHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         150 --S-SRGQTALHKAAMFKRRSICCMLVA-GGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       150 --~-~~~~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                        + ..|.||||+|+..++.+++++|+. .|++++..|..|.||+++|+..++.+++++|++
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence              3 379999999999999999999998 699999999999999999999999999999975

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.9e-21  Score=135.71  Aligned_cols=125  Identities=22%  Similarity=0.270  Sum_probs=108.3

Q ss_pred             cCCCCCcCCCCCccHHHHHHhcCCH----HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHH---HHHHHhc---
Q psy4236          80 QGYSLLSIDSVGQTALHYGSRYGHK----DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSI---CWMFLFF---  149 (208)
Q Consensus        80 ~g~~~~~~d~~g~t~l~~a~~~g~~----~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~---~~~l~~~---  149 (208)
                      +|++++..+..+.+++|.|++.|+.    +++++|++.|+.  ++.. +..|+||||+|+..+..+.   +++|++.   
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~--~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad   85 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL--LHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNMGAD   85 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh--hhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC
Confidence            5677888888899999999999998    566677788876  6666 4689999999999887554   7888844   


Q ss_pred             ----C-CCCCcHHHHHHhhCCHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         150 ----S-SRGQTALHKAAMFKRRSICCMLVA-GGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       150 ----~-~~~~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                          + ..|.||||+|+..++.+++++|+. .|++++..+..|.||+|+|+..++.+++++|++
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~  149 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRA  149 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                3 368999999999999999999995 899999999999999999999999999999986

>KOG0507|consensus

Probab=99.87  E-value=1.4e-21  Score=156.55  Aligned_cols=179  Identities=22%  Similarity=0.155  Sum_probs=161.4

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      .+..+.|+||.|+.+|+.++++.|+++.+-++..+..+..+++    .+..++++.++.++..+|.....|.+|||.|++
T Consensus        45 qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaq  124 (854)
T KOG0507|consen   45 QDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQ  124 (854)
T ss_pred             cCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhh
Confidence            3447899999999999999999999999999999988888864    577899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc---------------CCCCCcHHHHHHhhCC
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF---------------SSRGQTALHKAAMFKR  165 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~---------------~~~~~t~l~~A~~~~~  165 (208)
                      +|+.+++.+|+.+|+++  -+. +..++|++..|++.|..+++..|++.               +..+-+|+|+|+++|+
T Consensus       125 hgh~dvv~~Ll~~~adp--~i~-nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh  201 (854)
T KOG0507|consen  125 HGHLEVVFYLLKKNADP--FIR-NNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH  201 (854)
T ss_pred             hcchHHHHHHHhcCCCc--ccc-CcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcch
Confidence            99999999999999984  344 57799999999999999999999854               3456789999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         166 RSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       166 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .++++.|++.|.|+|.....| |+||.|+..|..+++++|++
T Consensus       202 ~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~  242 (854)
T KOG0507|consen  202 VECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLE  242 (854)
T ss_pred             HHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHh
Confidence            999999999999999887654 89999999999999999975

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=6.1e-21  Score=133.72  Aligned_cols=133  Identities=17%  Similarity=0.175  Sum_probs=105.5

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      +...+..+.|+||.|++.|+.++++.|+.....                       ...|++++.+|..|+||||+|+..
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~-----------------------~~~ga~in~~d~~g~T~Lh~A~~~   70 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRG-----------------------DCHAAALNATDDAGQMCIHIAAEK   70 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhcc-----------------------chhhhhhhccCCCCCcHHHHHHHc
Confidence            344567789999999999999999997642100                       124566778888899999999998


Q ss_pred             CC----HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCCHHHH
Q psy4236         102 GH----KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSIC  169 (208)
Q Consensus       102 g~----~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~~~~~  169 (208)
                      |+    .+++++|++.|++  ++.++...|+||||+|+..++.+++++|+..        +..|.||||.|+..++.+++
T Consensus        71 g~~~~~~~ii~~Ll~~gad--in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv  148 (169)
T PHA02741         71 HEAQLAAEIIDHLIELGAD--INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMM  148 (169)
T ss_pred             CChHHHHHHHHHHHHcCCC--CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHH
Confidence            88    4788999998888  7766323789999999999999999998852        46688999999999999999


Q ss_pred             HHHHhCCCCC
Q psy4236         170 CMLVAGGASL  179 (208)
Q Consensus       170 ~~Ll~~g~~~  179 (208)
                      ++|++.++..
T Consensus       149 ~~L~~~~~~~  158 (169)
T PHA02741        149 QILREIVATS  158 (169)
T ss_pred             HHHHHHHHHh
Confidence            9999865543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.86  E-value=5.6e-21  Score=161.89  Aligned_cols=166  Identities=23%  Similarity=0.163  Sum_probs=136.7

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHc--CCCCcccCCCCCCCcc-----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQ--GYSLKKIPPKDDHPNL-----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~--g~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      .+..+++.||+.|+.+.++.++++  +.++|..+..|.+|++     ++..++++.|++.|.    .+..|.||||.|+.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence            345799999999999999999999  9999999999999976     567899999999987    67789999999987


Q ss_pred             cC---CHHHHHHHHHcCCCCc----cc---cCCCCCCccHHHHHHhhCcHHHHHHHHhcC--------------------
Q psy4236         101 YG---HKDVVKYIIACAPSSI----LN---MQDNDKGQTALHKAAMFKRRSICWMFLFFS--------------------  150 (208)
Q Consensus       101 ~g---~~~~~~~ll~~g~~~~----~~---~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~--------------------  150 (208)
                      .+   ...+++.+...+.+..    .+   ......|.||||+|+..++.+++++|++++                    
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~  171 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS  171 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence            32   2334444444432200    11   111246999999999999999999999652                    


Q ss_pred             -CCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q psy4236         151 -SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN  197 (208)
Q Consensus       151 -~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  197 (208)
                       ..|.+|||.|+..|+.+++++|++.|+|++..|..|+||+|+|+..+
T Consensus       172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence             24889999999999999999999999999999999999999999986

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=2e-20  Score=140.47  Aligned_cols=150  Identities=13%  Similarity=0.027  Sum_probs=107.6

Q ss_pred             HHHhhhhchH-HHHHHHHhCCHHHHHHHHHcCCCCcccC----CCCCCCcc----chHHHHHHHHHHcCCCCCcCC-CCC
Q psy4236          22 IINILEKTSE-GVLKAARVGDIKMLKDLHSQGYSLKKIP----PKDDHPNL----NHFFFQLKDLHSQGYSLLSID-SVG   91 (208)
Q Consensus        22 ~~~~~~~~~~-~l~~A~~~g~~~~~~~Li~~g~~~~~~~----~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d-~~g   91 (208)
                      +...+..+.+ +|+.|+..|+.+++++|+++|++++.++    ..|.+|++    .+..+++++|+++|++++.++ ..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            3344444444 7888889999999999999999999864    36667764    345777888888888888753 467


Q ss_pred             ccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh--cCCCCCcHHHHHHhhCCHHHH
Q psy4236          92 QTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF--FSSRGQTALHKAAMFKRRSIC  169 (208)
Q Consensus        92 ~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~--~~~~~~t~l~~A~~~~~~~~~  169 (208)
                      .||||+|+..|+.+++++|++.|++  ++.+ +..|.||||+|+..++.+++..+..  .+..+.+|.+++   ++.+++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAd--in~k-d~~G~TpL~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGAD--INIQ-TNDMVTPIELALMICNNFLAFMICDNEISNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC--CCCC-CCCCCCHHHHHHHhCChhHHHHhcCCcccccccChhhhh---ccHHHH
Confidence            8888888888888888888888877  6666 3567888888877777666654432  234456676654   356777


Q ss_pred             HHHHhCCC
Q psy4236         170 CMLVAGGA  177 (208)
Q Consensus       170 ~~Ll~~g~  177 (208)
                      +.|+.+++
T Consensus       179 ~~Lish~v  186 (300)
T PHA02884        179 KILVSHFI  186 (300)
T ss_pred             HHHHHHHH
Confidence            77777766

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.86  E-value=7e-21  Score=162.39  Aligned_cols=135  Identities=21%  Similarity=0.239  Sum_probs=126.0

Q ss_pred             HHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-
Q psy4236          71 FFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-  149 (208)
Q Consensus        71 ~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-  149 (208)
                      .++++.|++.|++++..|..|+||||+|+..|+.++++.|++.|++  ++.+ +..|+||||+|+..|+.+++++|+.. 
T Consensus       538 ~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad--in~~-d~~G~TpL~~A~~~g~~~iv~~L~~~~  614 (823)
T PLN03192        538 AALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN--VHIR-DANGNTALWNAISAKHHKIFRILYHFA  614 (823)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC--CCCc-CCCCCCHHHHHHHhCCHHHHHHHHhcC
Confidence            4678999999999999999999999999999999999999999998  7777 47899999999999999999999854 


Q ss_pred             ----CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         150 ----SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       150 ----~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                          ...+.++||.|+..|+.++++.|+++|+|++..|.+|.||||+|+..|+.+++++|+++
T Consensus       615 ~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  677 (823)
T PLN03192        615 SISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMN  677 (823)
T ss_pred             cccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence                34578999999999999999999999999999999999999999999999999999863

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.85  E-value=1.2e-20  Score=159.80  Aligned_cols=177  Identities=18%  Similarity=0.063  Sum_probs=137.0

Q ss_pred             hhhhchHHHH-HHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchH-------HHHHHHHHHcCCC------CC----c
Q psy4236          25 ILEKTSEGVL-KAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHF-------FFQLKDLHSQGYS------LL----S   86 (208)
Q Consensus        25 ~~~~~~~~l~-~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~g~~------~~----~   86 (208)
                      .+..|.|||| .|+..++.++++.|+++|+    .+..|.++++...       ..++..+...+.+      ++    .
T Consensus        48 ~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~  123 (743)
T TIGR00870        48 PDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTS  123 (743)
T ss_pred             cCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccccc
Confidence            4467899999 8889999999999999998    4667777765222       2344555544422      11    1


Q ss_pred             CCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCC-------------CCCCccHHHHHHhhCcHHHHHHHHhc----
Q psy4236          87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD-------------NDKGQTALHKAAMFKRRSICWMFLFF----  149 (208)
Q Consensus        87 ~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~-------------~~~~~t~l~~a~~~~~~~~~~~l~~~----  149 (208)
                      ....|.||||+|+..|+.++++.|++.|++  ++...             ...|.||||.|+..++.+++++|++.    
T Consensus       124 ~~~~G~TpLhlAa~~~~~eiVklLL~~GAd--v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi  201 (743)
T TIGR00870       124 EFTPGITALHLAAHRQNYEIVKLLLERGAS--VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI  201 (743)
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHhCCCC--CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch
Confidence            124699999999999999999999999998  54321             13589999999999999999999854    


Q ss_pred             ---CCCCCcHHHHHHhhC---------CHHHHHHHHhCCCCC-------cccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         150 ---SSRGQTALHKAAMFK---------RRSICCMLVAGGASL-------TVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       150 ---~~~~~t~l~~A~~~~---------~~~~~~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                         +..|+||||+|+..+         ...+.++++..+++.       +..|.+|.||+++|+..|+.+++++|++
T Consensus       202 n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       202 LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence               566999999999986         233556666655554       6679999999999999999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514|consensus

Probab=99.85  E-value=6.2e-21  Score=141.56  Aligned_cols=154  Identities=26%  Similarity=0.320  Sum_probs=97.3

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcC-CCCcccCCCCCCCcc---------chHHHHHHHHHHcCCCCCcCCC-C
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQG-YSLKKIPPKDDHPNL---------NHFFFQLKDLHSQGYSLLSIDS-V   90 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g-~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~g~~~~~~d~-~   90 (208)
                      ++-.+.+|.|+||+|+..+++++|+.|++.| |+++..+..|.++.+         .....++..|..-| ++|.+-. -
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            3344566888899999888998998888876 577776666666643         22244555565555 5665544 3


Q ss_pred             CccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHH
Q psy4236          91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICC  170 (208)
Q Consensus        91 g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~  170 (208)
                      |+|+|+.|+.+|+.++++.||.+|++  ++.+| .+|-|+|.+|+..|                          +.++++
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAd--VNiQD-dDGSTALMCA~EHG--------------------------hkEivk  390 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGAD--VNIQD-DDGSTALMCAAEHG--------------------------HKEIVK  390 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCC--Ccccc-CCccHHHhhhhhhC--------------------------hHHHHH
Confidence            66677777677777777777766666  66663 45555555555554                          455555


Q ss_pred             HHHh-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Q psy4236         171 MLVA-GGASLTVKDYDSNTPRALALLANDTELAAYL  205 (208)
Q Consensus       171 ~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  205 (208)
                      .||. .+.|....|.+|-|+|.+|...|+.+|.-.|
T Consensus       391 lLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  391 LLLAVPSCDISLTDVDGSTALSIALEAGHREIAVML  426 (452)
T ss_pred             HHhccCcccceeecCCCchhhhhHHhcCchHHHHHH
Confidence            5554 4555666666666666666666666665444

>KOG0514|consensus

Probab=99.84  E-value=8.8e-21  Score=140.74  Aligned_cols=122  Identities=30%  Similarity=0.320  Sum_probs=109.2

Q ss_pred             CCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhh-----CcHHHHHHHHhc-------CC
Q psy4236          84 LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMF-----KRRSICWMFLFF-------SS  151 (208)
Q Consensus        84 ~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~-----~~~~~~~~l~~~-------~~  151 (208)
                      +|.-|..|+|+|||++.++++++|..||+.|. +.++.+ ++-|+||..+++..     .++++++-|...       ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgv-C~VD~q-NrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGV-CDVDQQ-NRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCc-cccccc-ccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhh
Confidence            56789999999999999999999999999985 458877 78999999998753     466778777744       46


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       152 ~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .|+|+|++|+.+|+.++++.||..|+|+|..|.+|-|+|+-|+.+|+.+|+++|+.
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA  394 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLA  394 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhc
Confidence            79999999999999999999999999999999999999999999999999999973

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=4.7e-20  Score=127.45  Aligned_cols=131  Identities=16%  Similarity=0.103  Sum_probs=74.9

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      ....+..|.||||+|++.|+.+.  .+...+...+.                      .+..++.+|..|.||||+|+..
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~--l~~~~~~~~~~----------------------~~~~~~~~d~~g~t~Lh~a~~~   65 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTD--LLAFKNAISDE----------------------NRYLVLEYNRHGKQCVHIVSNP   65 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHH--HHHHHHHhcch----------------------hHHHHHHhcCCCCEEEEeeccc
Confidence            34455678899999999998432  22222111100                      0111234577888999999888


Q ss_pred             CCH---HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCCHHHHH
Q psy4236         102 GHK---DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSICC  170 (208)
Q Consensus       102 g~~---~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~~~~~~  170 (208)
                      |..   +++++|++.|++  ++.+++..|+||||+|+..++.+++++|+.+        +..|.||||+|+..|+.++++
T Consensus        66 ~~~~~~e~v~~Ll~~gad--in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~  143 (154)
T PHA02736         66 DKADPQEKLKLLMEWGAD--INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMN  143 (154)
T ss_pred             CchhHHHHHHHHHHcCCC--ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHH
Confidence            876   467888888887  6655323566666666666555555544421        223444444444444444444


Q ss_pred             HHHhCCCC
Q psy4236         171 MLVAGGAS  178 (208)
Q Consensus       171 ~Ll~~g~~  178 (208)
                      +|+..|++
T Consensus       144 ~Ll~~ga~  151 (154)
T PHA02736        144 ILRAKGAQ  151 (154)
T ss_pred             HHHHcCCC
Confidence            44444444

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=7.5e-20  Score=126.42  Aligned_cols=122  Identities=19%  Similarity=0.247  Sum_probs=97.2

Q ss_pred             CCcCCCCCccHHHHHHhcCCHHHHHHHHHcCC--C---CccccCCCCCCccHHHHHHhhCcHH---HHHHHHhc------
Q psy4236          84 LLSIDSVGQTALHYGSRYGHKDVVKYIIACAP--S---SILNMQDNDKGQTALHKAAMFKRRS---ICWMFLFF------  149 (208)
Q Consensus        84 ~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~--~---~~~~~~~~~~~~t~l~~a~~~~~~~---~~~~l~~~------  149 (208)
                      .+.+|..|.||||+|++.|+.  ++++...+.  +   ..+... +..|+||||+|+..++.+   ++++|++.      
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc
Confidence            346788999999999999984  333322221  1   012223 467999999999998764   57777743      


Q ss_pred             -C-CCCCcHHHHHHhhCCHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         150 -S-SRGQTALHKAAMFKRRSICCMLVA-GGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       150 -~-~~~~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                       + ..|.||||+|+..++.+++++|+. .|++++..+..|.||+|+|+..|+.+++++|+++
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence             3 479999999999999999999998 5999999999999999999999999999999863

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=4.5e-19  Score=133.27  Aligned_cols=128  Identities=13%  Similarity=0.109  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHcCCCCCcCC----CCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHH
Q psy4236          70 FFFQLKDLHSQGYSLLSID----SVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM  145 (208)
Q Consensus        70 ~~~~~~~l~~~g~~~~~~d----~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  145 (208)
                      ..+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++  ++..++..|.||||+|+..++.+++++
T Consensus        45 ~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD--VN~~~~~~g~TpLh~Aa~~~~~eivkl  122 (300)
T PHA02884         45 YTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD--VNRYAEEAKITPLYISVLHGCLKCLEI  122 (300)
T ss_pred             CHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--cCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            3555666666666665542    3555666666666666666666666655  444322345566666665555666555


Q ss_pred             HHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         146 FLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       146 l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      |++.       +..|.||||+|+..++..++..+.  |..   .+..+.+|.+++   +..+++++|++
T Consensus       123 LL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~---~n~ei~~~Lis  183 (300)
T PHA02884        123 LLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL---INFDILKILVS  183 (300)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh---ccHHHHHHHHH
Confidence            5533       334556666665555555543333  211   233334455443   24566665553

>KOG0502|consensus

Probab=99.82  E-value=2.9e-20  Score=129.36  Aligned_cols=122  Identities=18%  Similarity=0.156  Sum_probs=105.7

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~   97 (208)
                      ++..++.|.|||.+|+..|+++++++|++.|+|+........++++    +++.++++.|+..+.++|..|+.|-|||.|
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLly  232 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLY  232 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeee
Confidence            4556677899999999999999999999999999998888888764    678899999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH
Q psy4236          98 GSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL  147 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  147 (208)
                      |++.++.+|++.|+..|++  ++..+ +.|++++..|+..|.. +++.++
T Consensus       233 Avrgnhvkcve~Ll~sGAd--~t~e~-dsGy~~mdlAValGyr-~Vqqvi  278 (296)
T KOG0502|consen  233 AVRGNHVKCVESLLNSGAD--VTQED-DSGYWIMDLAVALGYR-IVQQVI  278 (296)
T ss_pred             eecCChHHHHHHHHhcCCC--ccccc-ccCCcHHHHHHHhhhH-HHHHHH
Confidence            9999999999999999998  87774 7899999999888876 555544

>KOG0505|consensus

Probab=99.79  E-value=6.6e-19  Score=136.60  Aligned_cols=171  Identities=22%  Similarity=0.239  Sum_probs=140.6

Q ss_pred             HHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHH
Q psy4236          23 INILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYG   98 (208)
Q Consensus        23 ~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a   98 (208)
                      .-.+..|.|++|.++...+.++|++|+++|++||..+..+++|++    .++..++++|+.+|+++...+..|..|+-.+
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~  146 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLA  146 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccc
Confidence            455677899999999999999999999999999999999999974    6789999999999999887777776664332


Q ss_pred             Hhc-------------CC-------------HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh----
Q psy4236          99 SRY-------------GH-------------KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF----  148 (208)
Q Consensus        99 ~~~-------------g~-------------~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~----  148 (208)
                      ...             |.             ..=++..+..|..  .+... ..|.|.||.|+..|..++.++|+.    
T Consensus       147 e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~--~d~~~-~rG~T~lHvAaa~Gy~e~~~lLl~ag~~  223 (527)
T KOG0505|consen  147 EDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE--LDARH-ARGATALHVAAANGYTEVAALLLQAGYS  223 (527)
T ss_pred             cCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc--ccccc-cccchHHHHHHhhhHHHHHHHHHHhccC
Confidence            111             11             1112333345665  55553 449999999999999999999983    


Q ss_pred             ---cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHc
Q psy4236         149 ---FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA  196 (208)
Q Consensus       149 ---~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  196 (208)
                         +|..|+||||.|+..|..+++++|+.+|++.+.....|.+|+++|..-
T Consensus       224 ~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  224 VNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             cccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence               478899999999999999999999999999999999999999988663

>KOG0195|consensus

Probab=99.78  E-value=5.7e-19  Score=127.87  Aligned_cols=114  Identities=26%  Similarity=0.331  Sum_probs=102.8

Q ss_pred             HHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------C
Q psy4236          78 HSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------S  150 (208)
Q Consensus        78 ~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~  150 (208)
                      -+..-+.|.-|.-|.+|||+|++.|+..+++.|+..|+.  ++.. +....||||.|+..|+.+++..|+++       +
T Consensus        21 d~tehdln~gddhgfsplhwaakegh~aivemll~rgar--vn~t-nmgddtplhlaaahghrdivqkll~~kadvnavn   97 (448)
T KOG0195|consen   21 DDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR--VNST-NMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVN   97 (448)
T ss_pred             cCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc--cccc-cCCCCcchhhhhhcccHHHHHHHHHHhcccchhh
Confidence            345567788888999999999999999999999999999  7766 45678999999999999999998854       5


Q ss_pred             CCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHH
Q psy4236         151 SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALAL  194 (208)
Q Consensus       151 ~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  194 (208)
                      ..|+||||+||..|+-.+++-|+..|+.++..+..|.||++.|-
T Consensus        98 ehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   98 EHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             ccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            77999999999999999999999999999999999999999774

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=6.5e-17  Score=107.28  Aligned_cols=117  Identities=31%  Similarity=0.400  Sum_probs=106.6

Q ss_pred             CCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHH
Q psy4236          87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHK  159 (208)
Q Consensus        87 ~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~  159 (208)
                      ++..|.||||+|+..++.+++++|++.++.  .... +..|.+|+|.|+..+..++++++++.       +..+.||+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~--~~~~-~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD--VNAK-DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC--CCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            457799999999999999999999999987  4555 46899999999999999999999864       4568899999


Q ss_pred             HHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236         160 AAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLE  206 (208)
Q Consensus       160 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~  206 (208)
                      |+..++.+++++|+..|.+.+..+..|.||+++|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999999999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0512|consensus

Probab=99.76  E-value=2.6e-17  Score=110.75  Aligned_cols=134  Identities=21%  Similarity=0.174  Sum_probs=109.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHH
Q psy4236          32 GVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII  111 (208)
Q Consensus        32 ~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll  111 (208)
                      .+.+|+..|....|+.|++-.                            --.+|.+|.+|+||||.|+..|+.++++.|+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~----------------------------an~vNtrD~D~YTpLHRAaYn~h~div~~ll  117 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEK----------------------------ANHVNTRDEDEYTPLHRAAYNGHLDIVHELL  117 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhc----------------------------cccccccccccccHHHHHHhcCchHHHHHHH
Confidence            567777888888888865433                            2357889999999999999999999999999


Q ss_pred             HcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcC-------CCCCcHHHHHHhhCCH-HHHHHHHh-CCCCCccc
Q psy4236         112 ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS-------SRGQTALHKAAMFKRR-SICCMLVA-GGASLTVK  182 (208)
Q Consensus       112 ~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-------~~~~t~l~~A~~~~~~-~~~~~Ll~-~g~~~~~~  182 (208)
                      ..|++  ...+ ...|+||||-||..++.+++.+|++++       ....||||+|+...+. ..+++|+. .++++...
T Consensus       118 ~~gAn--~~a~-T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~  194 (228)
T KOG0512|consen  118 LSGAN--KEAK-TNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLK  194 (228)
T ss_pred             HccCC--cccc-cccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhh
Confidence            99998  7777 478999999999999999999999774       3357999999876654 45566654 89999999


Q ss_pred             CCCCCCHHHHHHHc
Q psy4236         183 DYDSNTPRALALLA  196 (208)
Q Consensus       183 ~~~g~t~l~~a~~~  196 (208)
                      +..+.||+++|-.-
T Consensus       195 nn~eeta~~iARRT  208 (228)
T KOG0512|consen  195 NNLEETAFDIARRT  208 (228)
T ss_pred             cCccchHHHHHHHh
Confidence            99999999988654

>KOG0507|consensus

Probab=99.74  E-value=1.3e-17  Score=134.18  Aligned_cols=158  Identities=23%  Similarity=0.231  Sum_probs=134.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHH
Q psy4236          31 EGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYI  110 (208)
Q Consensus        31 ~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~l  110 (208)
                      +-+..|++.|+++.+..|+++.--       +..++.         .-....+.|..|.+|.|.||.|+..|+.+++++|
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~-------r~~~l~---------~~trsds~n~qd~~gfTalhha~Lng~~~is~ll   68 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKG-------RSGLLF---------FTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLL   68 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCC-------CCCCCC---------CCCCCccccccCccchhHHHHHHhcCchHHHHHH
Confidence            467899999999999999986211       111110         1112345677788999999999999999999999


Q ss_pred             HHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccC
Q psy4236         111 IACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD  183 (208)
Q Consensus       111 l~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  183 (208)
                      ++..+-  +...+ ..|.+|+|+|++.|+.++++.++.+       ...|.||||.|++.|+.+++.+|+.+|+|+..+|
T Consensus        69 le~ea~--ldl~d-~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~n  145 (854)
T KOG0507|consen   69 LDYEAL--LDLCD-TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRN  145 (854)
T ss_pred             hcchhh--hhhhh-ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccC
Confidence            999876  66664 7899999999999999999999865       3568999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         184 YDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       184 ~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .++.|++++|+.-|..++++.|++
T Consensus       146 ns~~t~ldlA~qfgr~~Vvq~ll~  169 (854)
T KOG0507|consen  146 NSKETVLDLASRFGRAEVVQMLLQ  169 (854)
T ss_pred             cccccHHHHHHHhhhhHHHHHHhh
Confidence            999999999999999999999976

>KOG0512|consensus

Probab=99.72  E-value=8e-17  Score=108.40  Aligned_cols=111  Identities=21%  Similarity=0.249  Sum_probs=96.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCH
Q psy4236          94 ALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRR  166 (208)
Q Consensus        94 ~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~  166 (208)
                      .+.+|+..+....|+.||+..++ .++.+ +.+++||||-|+.+|+.++++.|+..       ...|+||||-||..++.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an-~vNtr-D~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKAN-HVNTR-DEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccc-ccccc-ccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence            46789999999999999998775 36666 48899999999999999999999844       56799999999999999


Q ss_pred             HHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC-HHHHHHHh
Q psy4236         167 SICCMLVAGGASLTVKDYDSNTPRALALLAND-TELAAYLE  206 (208)
Q Consensus       167 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~-~~~~~~L~  206 (208)
                      +++.+|+++|+|+++......||||+|+.+.+ ...+++|+
T Consensus       144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll  184 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLL  184 (228)
T ss_pred             hHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHh
Confidence            99999999999999999999999999998754 45555654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=1.2e-16  Score=100.10  Aligned_cols=82  Identities=30%  Similarity=0.454  Sum_probs=55.3

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHH
Q psy4236          95 LHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRS  167 (208)
Q Consensus        95 l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~  167 (208)
                      ||+|++.|+.+++++|++.+.+  ++.     |+||||+|+..|+.+++++|++.       +..|.||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~--~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD--INL-----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST--TTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC--CCC-----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            6788888888888888887765  321     56677777777777777666643       345667777777777777


Q ss_pred             HHHHHHhCCCCCcccC
Q psy4236         168 ICCMLVAGGASLTVKD  183 (208)
Q Consensus       168 ~~~~Ll~~g~~~~~~~  183 (208)
                      ++++|+++|++++.+|
T Consensus        74 ~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHcCCCCCCcC
Confidence            7777777777766553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=4.5e-16  Score=97.49  Aligned_cols=78  Identities=29%  Similarity=0.273  Sum_probs=71.3

Q ss_pred             HHHHHhhCcHHHHHHHHhcCCC---CCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         131 LHKAAMFKRRSICWMFLFFSSR---GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       131 l~~a~~~~~~~~~~~l~~~~~~---~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      ||+|+..++.+++++|++....   |.||||+|+..|+.+++++|++.|++++..|..|+||+|+|+.+|+.+++++|++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~   80 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINLGNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLE   80 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTSSSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            7899999999999999965322   6799999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q psy4236         208 S  208 (208)
Q Consensus       208 ~  208 (208)
                      .
T Consensus        81 ~   81 (89)
T PF12796_consen   81 H   81 (89)
T ss_dssp             T
T ss_pred             c
Confidence            3

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=2.7e-15  Score=99.39  Aligned_cols=116  Identities=27%  Similarity=0.363  Sum_probs=87.6

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD  105 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~  105 (208)
                      +.+|.|||+.|+..|+.+++++|+++|.++                             +..+..|.+|+|+|+..+..+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-----------------------------~~~~~~g~~~l~~a~~~~~~~   54 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-----------------------------NAKDNDGRTPLHLAAKNGHLE   54 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-----------------------------CccCCCCCcHHHHHHHcCCHH
Confidence            356889999999999999999987776654                             356667777888888777778


Q ss_pred             HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236         106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV  173 (208)
Q Consensus       106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll  173 (208)
                      +++++++.++.  ++.. +..+.||+|+|+..++.+++++|+..       +..+.||+++|...++.+++++|+
T Consensus        55 ~~~~ll~~~~~--~~~~-~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          55 IVKLLLEKGAD--VNAR-DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHHcCCC--cccc-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            88888877765  5554 35677788888877777777777653       455677888887777777777763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676|consensus

Probab=99.66  E-value=7.5e-16  Score=125.15  Aligned_cols=175  Identities=18%  Similarity=0.175  Sum_probs=135.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcC---------CCCcccCCCCCCCcc-------chHHHHHHHHHHcCC----CCCcCC-C
Q psy4236          31 EGVLKAARVGDIKMLKDLHSQG---------YSLKKIPPKDDHPNL-------NHFFFQLKDLHSQGY----SLLSID-S   89 (208)
Q Consensus        31 ~~l~~A~~~g~~~~~~~Li~~g---------~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~----~~~~~d-~   89 (208)
                      .++..|...+..+.+..+...+         .+++.....|++.++       .++-++++.|++--.    ++-.-+ .
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4666677777777766666655         566666566665543       222355555554321    111112 3


Q ss_pred             CCccHHHHHHhcCCHHHHHHHHHcCCCCccccCC----------------------CCCCccHHHHHHhhCcHHHHHHHH
Q psy4236          90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD----------------------NDKGQTALHKAAMFKRRSICWMFL  147 (208)
Q Consensus        90 ~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~----------------------~~~~~t~l~~a~~~~~~~~~~~l~  147 (208)
                      .|+||||.|+.+.+.++|++|++.|+|  ++.+-                      ...|+.||.+|+..++.+++++|+
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gAD--V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGAD--VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCc--hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            699999999999999999999999988  44221                      124788999999999999999999


Q ss_pred             hc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS--LTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       148 ~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      ++       |.+|+|.||..+..-..++-..++++|++  ...+|.+|.|||.+|++-|..+|.+.+++
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile  329 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILE  329 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHH
Confidence            54       78899999999999889999999999999  99999999999999999999999998875

>KOG4369|consensus

Probab=99.66  E-value=1e-16  Score=133.71  Aligned_cols=177  Identities=20%  Similarity=0.177  Sum_probs=139.3

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCc----cchHHHHHHHHHHcCCCCCcCCC--CCccHHHHHHhcC
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPN----LNHFFFQLKDLHSQGYSLLSIDS--VGQTALHYGSRYG  102 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~----~~~~~~~~~~l~~~g~~~~~~d~--~g~t~l~~a~~~g  102 (208)
                      +.|+|.+||--|..+++..|+.+|++-.-++-.+.+|+    ..+..++++.|+.+|.+++.+..  .|-+||..|...|
T Consensus       824 kdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmng  903 (2131)
T KOG4369|consen  824 KDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNG  903 (2131)
T ss_pred             cCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcc
Confidence            44577777777777777777777777777776777664    36778899999999988887754  5788999999999


Q ss_pred             CHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhC
Q psy4236         103 HKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAG  175 (208)
Q Consensus       103 ~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~  175 (208)
                      +....+.|++.|-+  ++..-..+-+|+|-+|+..|+.+++++|+..       -+.|-|||+-++..|++++-+.|+..
T Consensus       904 h~~at~~ll~~gsd--iNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~  981 (2131)
T KOG4369|consen  904 HQAATLSLLQPGSD--INAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAA  981 (2131)
T ss_pred             ccHHHHHHhcccch--hccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhc
Confidence            99999999999887  6655445678899999999999999998844       46788999999999998888888888


Q ss_pred             CCCCc-----------------------------------ccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         176 GASLT-----------------------------------VKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       176 g~~~~-----------------------------------~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      |+|++                                   .+|..|.|+|++|+..|....+++|++
T Consensus       982 gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~ 1048 (2131)
T KOG4369|consen  982 GADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVS 1048 (2131)
T ss_pred             ccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhh
Confidence            87765                                   455667777777777777777776654

>KOG0195|consensus

Probab=99.61  E-value=1.9e-15  Score=109.79  Aligned_cols=110  Identities=25%  Similarity=0.328  Sum_probs=97.0

Q ss_pred             HHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHH
Q psy4236          23 INILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYG   98 (208)
Q Consensus        23 ~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a   98 (208)
                      +.-+..|.+|||+|++.|+..+++.|+.+|+-+|.++-.++++++    .++.++++.|++..+++|..++-|+||||||
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhya  107 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYA  107 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhh
Confidence            334566788999999999999999999999999999988888864    6788999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHH
Q psy4236          99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA  135 (208)
Q Consensus        99 ~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~  135 (208)
                      |.-|.-.+.+-|+.+|+.  ++.. +..|.||+..|.
T Consensus       108 cfwgydqiaedli~~ga~--v~ic-nk~g~tpldkak  141 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGAA--VNIC-NKKGMTPLDKAK  141 (448)
T ss_pred             hhhcHHHHHHHHHhccce--eeec-ccCCCCchhhhc
Confidence            999999999999999988  7766 688999987764

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.61  E-value=2.9e-15  Score=84.61  Aligned_cols=54  Identities=30%  Similarity=0.399  Sum_probs=46.4

Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236         153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLE  206 (208)
Q Consensus       153 ~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~  206 (208)
                      |.||+|+|+..|+.+++++|++.|.|++..|.+|.||+|+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999985

...

>KOG4369|consensus

Probab=99.60  E-value=6.9e-16  Score=128.90  Aligned_cols=174  Identities=18%  Similarity=0.068  Sum_probs=142.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCC-C----ccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236          31 EGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDH-P----NLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD  105 (208)
Q Consensus        31 ~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~-~----~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~  105 (208)
                      +||+.|..+|+.+..+.|++.|.|+|..-...+. +    +..+..+.+..|+...+++..+...|.|||+-++..|.++
T Consensus       894 sPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvd  973 (2131)
T KOG4369|consen  894 SPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVD  973 (2131)
T ss_pred             chhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccc
Confidence            3777777777777777777777777765444432 2    2355677888888888888888888999999999999999


Q ss_pred             HHHHHHHcCCCCccccCCC-CCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCC
Q psy4236         106 VVKYIIACAPSSILNMQDN-DKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGA  177 (208)
Q Consensus       106 ~~~~ll~~g~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~  177 (208)
                      +-++|+..|++  .++-.- ....|+|-.++..|+...+..|+..       ++.|.|+|++|+..|+...+..|++.++
T Consensus       974 vg~~li~~gad--~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~a 1051 (2131)
T KOG4369|consen  974 VGNLLIAAGAD--TNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVA 1051 (2131)
T ss_pred             cchhhhhcccc--cccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhccc
Confidence            99999999988  443321 2355788889999999999988853       6789999999999999999999999999


Q ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236         178 SLTVKDYDSNTPRALALLANDTELAAYLE  206 (208)
Q Consensus       178 ~~~~~~~~g~t~l~~a~~~~~~~~~~~L~  206 (208)
                      |++..|....+++..|...|++.||+++.
T Consensus      1052 d~d~qdnr~~S~~maafRKgh~~iVk~mv 1080 (2131)
T KOG4369|consen 1052 DADQQDNRTNSRTMAAFRKGHFAIVKKMV 1080 (2131)
T ss_pred             ChhhhhcccccccHHHHHhchhheecccc
Confidence            99999999999999999999999999875

>KOG3676|consensus

Probab=99.57  E-value=4.5e-14  Score=114.99  Aligned_cols=139  Identities=16%  Similarity=0.182  Sum_probs=101.1

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCC-CCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDD-HPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD  105 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~  105 (208)
                      ..|.||||.|+.+-+.++|+.|++.|+|++..-...- .+.-.+       ...+..+..-.-..|..||.+|+..++.+
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk-------~~rk~T~Y~G~~YfGEyPLSfAAC~nq~e  254 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQK-------ASRKSTNYTGYFYFGEYPLSFAACTNQPE  254 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccccc-------ccccccCCcceeeeccCchHHHHHcCCHH
Confidence            4588999999999999999999999999987532111 000000       00011111111235888888888888899


Q ss_pred             HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc---------CCCCCcHHHHHHhhCCHHHHHHHHhC
Q psy4236         106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF---------SSRGQTALHKAAMFKRRSICCMLVAG  175 (208)
Q Consensus       106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~---------~~~~~t~l~~A~~~~~~~~~~~Ll~~  175 (208)
                      ++++|+++|++  ++.+| ..|+|.||..+..-..++-..+++.         +..|-|||-+|+..|..++.+.+++.
T Consensus       255 ivrlLl~~gAd--~~aqD-S~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  255 IVRLLLAHGAD--PNAQD-SNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHhcCCC--CCccc-cCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999988888  88884 7888999888888777777777754         34578899999998888888888876

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=1.6e-13  Score=100.16  Aligned_cols=120  Identities=26%  Similarity=0.308  Sum_probs=104.8

Q ss_pred             CcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCc-----HHHHHHHHhc----------
Q psy4236          85 LSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR-----RSICWMFLFF----------  149 (208)
Q Consensus        85 ~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~l~~~----------  149 (208)
                      ...+..+.++++.++..+...++++++..|++  ++.+ +..|.||+|+|+..++     .+++++|++.          
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGAD--VNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCC--cccc-cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            44556688899999999999999999999988  6666 5789999999999998     8999998843          


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         150 SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       150 ~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +..|.||||+|+..|+.++++.|+..|++++..+..|.|++++|+..++.+++..+.+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence            4568899999999999999999999999999999999999999999999999988865

>KOG4214|consensus

Probab=99.51  E-value=1.2e-13  Score=83.60  Aligned_cols=93  Identities=25%  Similarity=0.229  Sum_probs=62.8

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH-------hcCCCCCcHHHHHHhhCCHH
Q psy4236          95 LHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRS  167 (208)
Q Consensus        95 l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~-------~~~~~~~t~l~~A~~~~~~~  167 (208)
                      +.++++.|..+-|+..+..|.+  ++..  ..|++|||+|+..|+.++++||+       .+|++|-|||..|+..|+.+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~n--Vn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLN--VNEI--YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             HhhhhccCcHHHHHHHHHcccc--HHHH--hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            3455555666656555555544  4332  24556666666666666666655       23667778888888888899


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHH
Q psy4236         168 ICCMLVAGGASLTVKDYDSNTPRA  191 (208)
Q Consensus       168 ~~~~Ll~~g~~~~~~~~~g~t~l~  191 (208)
                      +|++|++.|+|....-.+|.+.+.
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHh
Confidence            999999999998888888876665

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.51  E-value=2.6e-14  Score=81.11  Aligned_cols=55  Identities=36%  Similarity=0.643  Sum_probs=32.6

Q ss_pred             HHHcC-CCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHH
Q psy4236          77 LHSQG-YSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA  134 (208)
Q Consensus        77 l~~~g-~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a  134 (208)
                      |+++| .+++.+|..|.||||+|+..|+.+++++|++.|++  ++.+ +..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d--~~~~-d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD--PNAK-DKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT----TT----TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC--CCCC-cCCCCCHHHhC
Confidence            46667 88899999999999999999999999999999998  8888 58899999986

>KOG4214|consensus

Probab=99.51  E-value=1.9e-13  Score=82.65  Aligned_cols=84  Identities=24%  Similarity=0.266  Sum_probs=54.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHH
Q psy4236          32 GVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV  107 (208)
Q Consensus        32 ~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~  107 (208)
                      .+.+++++|.++-|+..+..|.++|..- .+++|++    .+..+++.+|+..|++++.+|.+|-|||..|+..|+.+||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            5678888888888888888777776644 3444443    3345555556666666666666666666666666666666


Q ss_pred             HHHHHcCCC
Q psy4236         108 KYIIACAPS  116 (208)
Q Consensus       108 ~~ll~~g~~  116 (208)
                      ++|+++|++
T Consensus        84 klLL~~GAd   92 (117)
T KOG4214|consen   84 KLLLQNGAD   92 (117)
T ss_pred             HHHHHcCcc
Confidence            666666665

>KOG1710|consensus

Probab=99.47  E-value=8.9e-13  Score=95.86  Aligned_cols=119  Identities=19%  Similarity=0.234  Sum_probs=94.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHH
Q psy4236          30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKY  109 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~  109 (208)
                      .++|..++..|+++-...|++.                             --++|.+|..|.++|..|+..|+.++++.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~-----------------------------vr~vn~~D~sGMs~LahAaykGnl~~v~l   63 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST-----------------------------VRQVNQRDPSGMSVLAHAAYKGNLTLVEL   63 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH-----------------------------hhhhhccCCCcccHHHHHHhcCcHHHHHH
Confidence            4689999999999998886552                             22567899999999999999999999999


Q ss_pred             HHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCH
Q psy4236         110 IIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP  189 (208)
Q Consensus       110 ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  189 (208)
                      +++.|++  ++......+                          .||||.|+..|+.++++.|++.|+.+...|+-|+|+
T Consensus        64 ll~~gaD--vN~~qhg~~--------------------------YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTA  115 (396)
T KOG1710|consen   64 LLELGAD--VNDKQHGTL--------------------------YTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTA  115 (396)
T ss_pred             HHHhCCC--cCccccccc--------------------------ccHHHHHHHcCCchHHHHHHhccCccccccchhhhH
Confidence            9999999  765532334                          455555556666777778888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHH
Q psy4236         190 RALALLANDTELAAYL  205 (208)
Q Consensus       190 l~~a~~~~~~~~~~~L  205 (208)
                      .+.|+--|+.++|.++
T Consensus       116 aqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen  116 AQMAAFVGHHECVAII  131 (396)
T ss_pred             HHHHHHhcchHHHHHH
Confidence            8888888888888765

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.47  E-value=1.2e-12  Score=95.56  Aligned_cols=100  Identities=30%  Similarity=0.385  Sum_probs=70.5

Q ss_pred             HHHHHcCCCCCcCCCCCccHHHHHHhcCC-----HHHHHHHHHcCC--CCccccCCCCCCccHHHHHHhhCcHHHHHHHH
Q psy4236          75 KDLHSQGYSLLSIDSVGQTALHYGSRYGH-----KDVVKYIIACAP--SSILNMQDNDKGQTALHKAAMFKRRSICWMFL  147 (208)
Q Consensus        75 ~~l~~~g~~~~~~d~~g~t~l~~a~~~g~-----~~~~~~ll~~g~--~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  147 (208)
                      ++++..|.+++.++..|.||||+|+..++     .++++.|++.|+  + ....+ +..|+||||+|+..|+.++++.++
T Consensus        90 ~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~-~~~~~-~~~g~tpl~~A~~~~~~~~~~~ll  167 (235)
T COG0666          90 KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD-VNNLR-DEDGNTPLHWAALNGDADIVELLL  167 (235)
T ss_pred             HHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCC-Ccccc-CCCCCchhHHHHHcCchHHHHHHH
Confidence            33555566666677777777777777777     777777777777  2 13333 466777777777777777777777


Q ss_pred             hc-------CCCCCcHHHHHHhhCCHHHHHHHHhCC
Q psy4236         148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGG  176 (208)
Q Consensus       148 ~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g  176 (208)
                      +.       +..|.|+++.|+..++.+++..++..+
T Consensus       168 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         168 EAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            44       456778888888888888877777754

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=2.4e-13  Score=76.70  Aligned_cols=54  Identities=33%  Similarity=0.566  Sum_probs=44.6

Q ss_pred             CccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH
Q psy4236          91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL  147 (208)
Q Consensus        91 g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  147 (208)
                      |.||||+|+..|+.+++++|++.|.+  ++.+ +..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d--in~~-d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD--INAQ-DEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG--TT-B--TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC--CCCC-CCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999988  8888 588999999999999999999875

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=1.4e-12  Score=109.18  Aligned_cols=86  Identities=22%  Similarity=0.242  Sum_probs=67.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHH
Q psy4236          32 GVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII  111 (208)
Q Consensus        32 ~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll  111 (208)
                      .|+.|+..|+.+.++.|+++|                             ++++.+|..|.||||+|+..|+.+++++|+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~G-----------------------------adin~~d~~G~TpLh~Aa~~g~~eiv~~LL  135 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGG-----------------------------ADPNCRDYDGRTPLHIACANGHVQVVRVLL  135 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-----------------------------CCCCCcCCCCCcHHHHHHHCCCHHHHHHHH
Confidence            577888888888888865544                             455567888999999999999999999999


Q ss_pred             HcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc
Q psy4236         112 ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF  149 (208)
Q Consensus       112 ~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  149 (208)
                      +.|++  ++.. +..|.||||+|+..++.+++++|+.+
T Consensus       136 ~~Gad--vn~~-d~~G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        136 EFGAD--PTLL-DKDGKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             HCCCC--CCCC-CCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence            99988  7766 46788888888877777777777654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.43  E-value=2e-13  Score=77.44  Aligned_cols=45  Identities=33%  Similarity=0.439  Sum_probs=30.2

Q ss_pred             cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHH
Q psy4236         149 FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA  193 (208)
Q Consensus       149 ~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  193 (208)
                      ++..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus        12 ~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   12 QDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            467788999999999999999999999999999999999999987

>KOG0515|consensus

Probab=99.35  E-value=7.9e-12  Score=97.74  Aligned_cols=115  Identities=15%  Similarity=0.086  Sum_probs=96.1

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236          31 EGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDV  106 (208)
Q Consensus        31 ~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~  106 (208)
                      -.|..|+..|.+++|+..+..--|+...+..|.++++    .++.+|+++|++.|++||..|.+||||||.|+.+++..+
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            3678899999999999999988889888999988864    677899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCccccCCCCCCccHHHHHHh--hCcHHHHHHHH
Q psy4236         107 VKYIIACAPSSILNMQDNDKGQTALHKAAM--FKRRSICWMFL  147 (208)
Q Consensus       107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~l~  147 (208)
                      ++.|++.|+-  +-...-.++.|+..-+-.  -|..++.+||.
T Consensus       632 ckqLVe~Gaa--vfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  632 CKQLVESGAA--VFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHhccce--EEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            9999999876  433334567787766443  36778888886

>KOG0515|consensus

Probab=99.31  E-value=1.2e-11  Score=96.66  Aligned_cols=108  Identities=29%  Similarity=0.283  Sum_probs=87.7

Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHH
Q psy4236          96 HYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSI  168 (208)
Q Consensus        96 ~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~  168 (208)
                      .-|+..|-+++|+..+..--|  +... +.+|.|+||.|+..|+.+|++||++.       |.+|+||||+|+.-++..+
T Consensus       555 LDaaLeGEldlVq~~i~ev~D--pSqp-NdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTD--PSQP-NDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcC--CCCC-CccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            347778999999998887655  4444 67899999999999999999999954       6779999999999999999


Q ss_pred             HHHHHhCCCCCccc-CCCCCCHHHHHHH--cCCHHHHHHHh
Q psy4236         169 CCMLVAGGASLTVK-DYDSNTPRALALL--ANDTELAAYLE  206 (208)
Q Consensus       169 ~~~Ll~~g~~~~~~-~~~g~t~l~~a~~--~~~~~~~~~L~  206 (208)
                      ++.|++.|+-+.+. -+++.||.+.+-.  .|...|.+||.
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            99999988776644 4667899887744  57788888874

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.30  E-value=1.5e-11  Score=103.01  Aligned_cols=99  Identities=19%  Similarity=0.218  Sum_probs=86.6

Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCC
Q psy4236          93 TALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKR  165 (208)
Q Consensus        93 t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~  165 (208)
                      ..|+.|+..|+.+.++.|++.|++  ++.. +..|+||||+|+..|+.+++++|++.       +..|.||||+|+..|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad--in~~-d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD--PNCR-DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC--CCCc-CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc
Confidence            468889999999999999999998  7777 47899999999999999999999854       5678999999999999


Q ss_pred             HHHHHHHHhC-------CCCCcccCCCCCCHHHHHH
Q psy4236         166 RSICCMLVAG-------GASLTVKDYDSNTPRALAL  194 (208)
Q Consensus       166 ~~~~~~Ll~~-------g~~~~~~~~~g~t~l~~a~  194 (208)
                      .+++++|+.+       |++.+..+..|.+|+..+.
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999988       8889988888888876443

>KOG1710|consensus

Probab=99.24  E-value=6e-11  Score=86.50  Aligned_cols=96  Identities=17%  Similarity=0.214  Sum_probs=83.7

Q ss_pred             hHHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          21 DIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      .++..++.|.++|.-|++.|+.++++.|++.|+|+|.                            ..+..+.||||+|+.
T Consensus        37 ~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~----------------------------~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   37 QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND----------------------------KQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc----------------------------ccccccccHHHHHHH
Confidence            4667788899999999999999999999998888875                            356778899999999


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL  147 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  147 (208)
                      .|+.++.+.|++.|+.  .... +.-|+|+-..|+.-|+-+++..+-
T Consensus        89 SGn~dvcrllldaGa~--~~~v-NsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGAR--MYLV-NSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             cCCchHHHHHHhccCc--cccc-cchhhhHHHHHHHhcchHHHHHHh
Confidence            9999999999999998  5545 677999999999999988887764

>KOG0782|consensus

Probab=99.09  E-value=1.2e-09  Score=86.66  Aligned_cols=104  Identities=43%  Similarity=0.651  Sum_probs=84.6

Q ss_pred             HHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcH
Q psy4236          77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTA  156 (208)
Q Consensus        77 l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~  156 (208)
                      ....|.++..++...++.||+|+..|+-++|+++|++|+...+++.                           +..|.|+
T Consensus       885 ~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~---------------------------de~get~  937 (1004)
T KOG0782|consen  885 THLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMA---------------------------DETGETA  937 (1004)
T ss_pred             HHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHH---------------------------hhhhhHH
Confidence            4556667777778888999999999999999999999875333222                           3456777


Q ss_pred             HHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         157 LHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       157 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      ||.|+..++-.++++|++.|+..-..|..|.||-.-|-..|+.+++.+|.+
T Consensus       938 lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  938 LHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            777778888888889999999999999999999999999999999988863

>PF13606 Ank_3: Ankyrin repeat

Probab=99.03  E-value=4.6e-10  Score=54.71  Aligned_cols=30  Identities=33%  Similarity=0.367  Sum_probs=27.8

Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhCCCCCcc
Q psy4236         152 RGQTALHKAAMFKRRSICCMLVAGGASLTV  181 (208)
Q Consensus       152 ~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  181 (208)
                      +|+||||+|+..|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.97  E-value=1.4e-09  Score=54.47  Aligned_cols=33  Identities=33%  Similarity=0.448  Sum_probs=30.6

Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCC
Q psy4236         152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDY  184 (208)
Q Consensus       152 ~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  184 (208)
                      +|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818|consensus

Probab=98.97  E-value=4.5e-09  Score=81.99  Aligned_cols=78  Identities=27%  Similarity=0.273  Sum_probs=64.7

Q ss_pred             HHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHH
Q psy4236         130 ALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTEL  201 (208)
Q Consensus       130 ~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  201 (208)
                      .||..++.++.+.+--|+..        ...|.||||.|+..|+..-+++|+-.|+|+++.|.+|.||+.||-..|+.++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            46667777777666555543        2347888889999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q psy4236         202 AAYLEK  207 (208)
Q Consensus       202 ~~~L~~  207 (208)
                      .+.|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            988864

>PF13606 Ank_3: Ankyrin repeat

Probab=98.94  E-value=1.4e-09  Score=53.02  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=27.6

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcc
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKK   57 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~   57 (208)
                      .|.||||.||+.|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            378999999999999999999999999873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.86  E-value=4.9e-09  Score=52.48  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=29.6

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcccC
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIP   59 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~   59 (208)
                      .|.||||+|+..|+.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            37899999999999999999999999998865

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=98.84  E-value=2.3e-09  Score=88.35  Aligned_cols=63  Identities=24%  Similarity=0.358  Sum_probs=50.8

Q ss_pred             CCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh
Q psy4236          84 LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF  148 (208)
Q Consensus        84 ~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~  148 (208)
                      .+.+|..|+++||.++..+..++++||+.+|++  +..+|...|+||||-|..+|+++++..|++
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGid--v~vqD~ESG~taLHRaiyyG~idca~lLL~  107 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGID--VFVQDEESGYTALHRAIYYGNIDCASLLLS  107 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCce--eeeccccccchHhhHhhhhchHHHHHHHHh
Confidence            467899999999999999999999999999998  777765667777777776666666655553

>KOG0506|consensus

Probab=98.83  E-value=4.3e-09  Score=81.71  Aligned_cols=82  Identities=23%  Similarity=0.073  Sum_probs=72.5

Q ss_pred             CCccHHHHHHhhCcHHHHHHHH-------hcCCCCCcHHHHHHhhCCHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcC
Q psy4236         126 KGQTALHKAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVA-GGASLTVKDYDSNTPRALALLAN  197 (208)
Q Consensus       126 ~~~t~l~~a~~~~~~~~~~~l~-------~~~~~~~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~  197 (208)
                      .+..++.+|++.|+...++-+.       ..|.+.+|+||.|+..|+++++++|++ .+++++.+|++|+|||+-|..-+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            4566788999999998887654       336778999999999999999999998 79999999999999999999999


Q ss_pred             CHHHHHHHhh
Q psy4236         198 DTELAAYLEK  207 (208)
Q Consensus       198 ~~~~~~~L~~  207 (208)
                      +.+++++|.+
T Consensus       585 h~~v~k~L~~  594 (622)
T KOG0506|consen  585 HKEVVKLLEE  594 (622)
T ss_pred             cHHHHHHHHH
Confidence            9999999875

>KOG0818|consensus

Probab=98.77  E-value=5.4e-08  Score=76.14  Aligned_cols=85  Identities=16%  Similarity=0.192  Sum_probs=73.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHH
Q psy4236          32 GVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII  111 (208)
Q Consensus        32 ~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll  111 (208)
                      .||-.++.|+.++...|+..|+++|...                            -+.|.||||.|++.|+..-+++|+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~h----------------------------pekg~TpLHvAAk~Gq~~Q~ElL~  187 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFH----------------------------PEKGNTPLHVAAKAGQILQAELLA  187 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCC----------------------------cccCCchhHHHHhccchhhhhHHh
Confidence            7999999999999999877777766532                            257899999999999999999999


Q ss_pred             HcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH
Q psy4236         112 ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL  147 (208)
Q Consensus       112 ~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  147 (208)
                      =.|++  +... +..|.||+.+|-..|+-++.+-|+
T Consensus       188 vYGAD--~~a~-d~~GmtP~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  188 VYGAD--PGAQ-DSSGMTPVDYARQGGHHELAERLV  220 (669)
T ss_pred             hccCC--CCCC-CCCCCcHHHHHHhcCchHHHHHHH
Confidence            99999  8777 488999999999999999888776

>KOG0522|consensus

Probab=98.75  E-value=3.8e-08  Score=77.54  Aligned_cols=58  Identities=19%  Similarity=0.300  Sum_probs=52.8

Q ss_pred             cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236         149 FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLE  206 (208)
Q Consensus       149 ~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~  206 (208)
                      .+..|+||||+|+..|+++.++.|+.+|+|+..+|..|++|||.|+..|+..++..++
T Consensus        51 ~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vl  108 (560)
T KOG0522|consen   51 RDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVL  108 (560)
T ss_pred             ccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999998777665

>KOG0783|consensus

Probab=98.72  E-value=1.3e-08  Score=84.17  Aligned_cols=62  Identities=27%  Similarity=0.385  Sum_probs=50.9

Q ss_pred             HHHHHHHHcCCCCCcCCC-CCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHh
Q psy4236          72 FQLKDLHSQGYSLLSIDS-VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAM  136 (208)
Q Consensus        72 ~~~~~l~~~g~~~~~~d~-~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~  136 (208)
                      .++++|+++|++++.+|. .|+||||.|..+|+.+|+-.||++|.+  +..+| .+|.+||.+.++
T Consensus        66 ~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S--L~i~D-keglsplq~~~r  128 (1267)
T KOG0783|consen   66 SFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS--LRIKD-KEGLSPLQFLSR  128 (1267)
T ss_pred             HHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc--eEEec-ccCCCHHHHHhh
Confidence            344445556666666765 699999999999999999999999988  88884 899999998876

>KOG0506|consensus

Probab=98.69  E-value=2.7e-08  Score=77.35  Aligned_cols=87  Identities=29%  Similarity=0.411  Sum_probs=63.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHH
Q psy4236          30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKY  109 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~  109 (208)
                      ...+++|++.|+...++.+.-                             +|.|++.+|.+.+|+||.|+-.|+.+++++
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l-----------------------------~g~D~~~~DyD~RTaLHvAAaEG~v~v~kf  557 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFAL-----------------------------QGMDLETKDYDDRTALHVAAAEGHVEVVKF  557 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHH-----------------------------hcccccccccccchhheeecccCceeHHHH
Confidence            346777888888887777543                             445556677788888888888888888888


Q ss_pred             HHHc-CCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh
Q psy4236         110 IIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF  148 (208)
Q Consensus       110 ll~~-g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~  148 (208)
                      |++. +.+  ++.+ ++.|+|||.-|...++.+++++|-+
T Consensus       558 l~~~~kv~--~~~k-DRw~rtPlDdA~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  558 LLNACKVD--PDPK-DRWGRTPLDDAKHFKHKEVVKLLEE  594 (622)
T ss_pred             HHHHHcCC--CChh-hccCCCcchHhHhcCcHHHHHHHHH
Confidence            8865 444  5555 3678888888888888888877753

>KOG3609|consensus

Probab=98.56  E-value=5.5e-07  Score=74.87  Aligned_cols=126  Identities=17%  Similarity=0.171  Sum_probs=98.5

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDV  106 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~  106 (208)
                      ..+......|+.+|+...++..++....                         ...++|..|.-|+++|+.|....+.++
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~-------------------------~~lninc~d~lGr~al~iai~nenle~   77 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAV-------------------------SKLNINCRDPLGRLALHIAIDNENLEL   77 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccc-------------------------cccchhccChHhhhceecccccccHHH
Confidence            3344578899999999999998775322                         113567788889999999999999999


Q ss_pred             HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-----------------CCCCCcHHHHHHhhCCHHHH
Q psy4236         107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-----------------SSRGQTALHKAAMFKRRSIC  169 (208)
Q Consensus       107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-----------------~~~~~t~l~~A~~~~~~~~~  169 (208)
                      +++|++.+..  .        ..+|.+|+..+..+.++.++..                 -..+-||+.+||..++.+++
T Consensus        78 ~eLLl~~~~~--~--------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil  147 (822)
T KOG3609|consen   78 QELLLDTSSE--E--------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEIL  147 (822)
T ss_pred             HHHHhcCccc--c--------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHH
Confidence            9999987643  1        3378888888999999988733                 13467999999999999999


Q ss_pred             HHHHhCCCCCcccCCCCC
Q psy4236         170 CMLVAGGASLTVKDYDSN  187 (208)
Q Consensus       170 ~~Ll~~g~~~~~~~~~g~  187 (208)
                      ++|+.+|+++........
T Consensus       148 ~~Ll~kg~~i~~PH~~~C  165 (822)
T KOG3609|consen  148 QCLLTRGHCIPIPHDIRC  165 (822)
T ss_pred             HHHHHcCCCCCCCccccc
Confidence            999999999876554443

>KOG0511|consensus

Probab=98.56  E-value=1e-06  Score=67.05  Aligned_cols=57  Identities=26%  Similarity=0.433  Sum_probs=49.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHH
Q psy4236          31 EGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYI  110 (208)
Q Consensus        31 ~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~l  110 (208)
                      --|++||+.|+++.+++|++.|.                             ++|..|..-.+||.+|+.+|+..++++|
T Consensus        38 ~elceacR~GD~d~v~~LVetgv-----------------------------nVN~vD~fD~spL~lAsLcGHe~vvklL   88 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGV-----------------------------NVNAVDRFDSSPLYLASLCGHEDVVKLL   88 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCC-----------------------------CcchhhcccccHHHHHHHcCcHHHHHHH
Confidence            37999999999999999666554                             5556788888999999999999999999


Q ss_pred             HHcCCC
Q psy4236         111 IACAPS  116 (208)
Q Consensus       111 l~~g~~  116 (208)
                      +++|+-
T Consensus        89 LenGAi   94 (516)
T KOG0511|consen   89 LENGAI   94 (516)
T ss_pred             HHcCCc
Confidence            999985

>KOG0522|consensus

Probab=98.53  E-value=6.6e-07  Score=70.76  Aligned_cols=66  Identities=23%  Similarity=0.385  Sum_probs=58.6

Q ss_pred             CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc
Q psy4236          81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF  149 (208)
Q Consensus        81 g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  149 (208)
                      +..++..|.-|.||||.|+.-|+.+.++.|+..|++  +..+ +..|++|||-|+..|+.+++..++.+
T Consensus        45 ~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad--v~~k-N~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   45 SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD--VSIK-NNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC--cccc-ccccccHHHHHHHcCCHHHHHHHHHH
Confidence            446778899999999999999999999999999998  7777 68899999999999999988877743

>KOG3609|consensus

Probab=98.43  E-value=1.5e-06  Score=72.38  Aligned_cols=117  Identities=21%  Similarity=0.130  Sum_probs=96.0

Q ss_pred             CccHHHHHHhcCCHHHHHHHHHcCCC--CccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHH
Q psy4236          91 GQTALHYGSRYGHKDVVKYIIACAPS--SILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSI  168 (208)
Q Consensus        91 g~t~l~~a~~~g~~~~~~~ll~~g~~--~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~  168 (208)
                      +..-...|++.|+...|+..++....  -.+++.| .-|+++++.|..+.+.++.++|++++..-+.+|.+|+..|.++.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d-~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~  103 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRD-PLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPL  103 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccC-hHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence            33456788999999999999876433  2356774 77999999999999999999999998777899999999999999


Q ss_pred             HHHHHhCCCCC----------cccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         169 CCMLVAGGASL----------TVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       169 ~~~Ll~~g~~~----------~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      |+.++.+....          ...-..+-||+.+|+..++.+|+++|+++
T Consensus       104 VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k  153 (822)
T KOG3609|consen  104 VELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR  153 (822)
T ss_pred             HHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc
Confidence            99999864433          23334467999999999999999999863

>KOG0782|consensus

Probab=98.41  E-value=8.9e-07  Score=70.75  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=55.1

Q ss_pred             CcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc
Q psy4236          85 LSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF  149 (208)
Q Consensus        85 ~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  149 (208)
                      +..|+.|.|+||.|+..++..+..+|++.|++  +... +..|.||-.-|-..|+.+...+|-++
T Consensus       928 d~~de~get~lhkaa~~~~r~vc~~lvdagas--l~kt-d~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  928 DMADETGETALHKAACQRNRAVCQLLVDAGAS--LRKT-DSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHhhhhhHHHHHHHHhcchHHHHHHHhcchh--heec-ccCCCChHHHHHhcCCchHHHHHhhh
Confidence            46778999999999999999999999999998  7777 47899999999999999999888755

>KOG0705|consensus

Probab=98.41  E-value=1.1e-06  Score=70.31  Aligned_cols=77  Identities=23%  Similarity=0.200  Sum_probs=64.6

Q ss_pred             HHHHHhhCcHHHHHHHHhc-----------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCH
Q psy4236         131 LHKAAMFKRRSICWMFLFF-----------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT  199 (208)
Q Consensus       131 l~~a~~~~~~~~~~~l~~~-----------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  199 (208)
                      |.-|+.-.+...+-.|+.+           +..|.|+||+||..|++.+.++|+=.|+|+-.+|..|+|||.||-..|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            3344444555666666643           34578999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy4236         200 ELAAYLEK  207 (208)
Q Consensus       200 ~~~~~L~~  207 (208)
                      +|+.+|++
T Consensus       708 ec~d~llq  715 (749)
T KOG0705|consen  708 ECIDVLLQ  715 (749)
T ss_pred             HHHHHHHH
Confidence            99999986

>KOG0705|consensus

Probab=98.37  E-value=2.7e-06  Score=68.08  Aligned_cols=64  Identities=23%  Similarity=0.277  Sum_probs=52.4

Q ss_pred             CCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCC
Q psy4236          87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRG  153 (208)
Q Consensus        87 ~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~  153 (208)
                      -+..|+|+||.||+.|++.+.++|+..|++  +...| ..|+|+|.||-..|..+++..|+..+..+
T Consensus       657 ~~~~grt~LHLa~~~gnVvl~QLLiWyg~d--v~~rd-a~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  657 GEGDGRTALHLAARKGNVVLAQLLIWYGVD--VMARD-AHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             cCCCCcchhhhhhhhcchhHHHHHHHhCcc--ceecc-cCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            345788999999999999999999999988  77774 67888998888888888888888665433

>KOG2384|consensus

Probab=98.35  E-value=1e-06  Score=60.86  Aligned_cols=60  Identities=27%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             hcCCCCCcHHHHHHhhCCHHHHHHHHhCC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         148 FFSSRGQTALHKAAMFKRRSICCMLVAGG-ASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       148 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .+|..|+||+++|+..|..+.+.+|+.+| +++...|..|.+++.+|-+.|..++++.|.+
T Consensus         7 ~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe   67 (223)
T KOG2384|consen    7 ARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFE   67 (223)
T ss_pred             chhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHH
Confidence            35778899999999999999999999999 8999999999999999999999999988875

>KOG2384|consensus

Probab=98.16  E-value=7.8e-06  Score=56.64  Aligned_cols=66  Identities=15%  Similarity=0.165  Sum_probs=57.0

Q ss_pred             CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcC-CCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc
Q psy4236          81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACA-PSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF  149 (208)
Q Consensus        81 g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  149 (208)
                      +.++|.+|.+|+|+++.|+..|..+.+.||+..| +.  +... +..+.+++.+|-+.|...+++.|.+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~--vgv~-d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF--VGVT-DESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc--cccc-ccccchHHHHHHhcChHHHHHHHHHH
Confidence            4578899999999999999999999999999999 55  5555 47788999999999999999988754

>KOG0511|consensus

Probab=98.08  E-value=8.5e-06  Score=62.23  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=27.8

Q ss_pred             HHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCC
Q psy4236         130 ALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSN  187 (208)
Q Consensus       130 ~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  187 (208)
                      -|..||+.|+.+.+++|+++       |.....||.+|+.-|+.+++++|+++|+--...-.+|.
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~  103 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD  103 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc
Confidence            34455555555555555533       23334455555555555555555555544433333333

>KOG0521|consensus

Probab=97.99  E-value=1e-05  Score=68.76  Aligned_cols=79  Identities=29%  Similarity=0.389  Sum_probs=57.5

Q ss_pred             CccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCH
Q psy4236         127 GQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT  199 (208)
Q Consensus       127 ~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  199 (208)
                      |.+++|.|+..+..-.+++|++.       +..|++|+|.+...|+...+..|+++|++.+..+.+|.+|+++|....+-
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~  735 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANA  735 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccc
Confidence            45556666666655555555532       45577788888888888888888899999999999999999999776666


Q ss_pred             HHHHHH
Q psy4236         200 ELAAYL  205 (208)
Q Consensus       200 ~~~~~L  205 (208)
                      +++-++
T Consensus       736 d~~~l~  741 (785)
T KOG0521|consen  736 DIVLLL  741 (785)
T ss_pred             cHHHHH
Confidence            655433

>KOG0520|consensus

Probab=97.97  E-value=1.6e-05  Score=67.89  Aligned_cols=115  Identities=19%  Similarity=0.159  Sum_probs=65.9

Q ss_pred             CCCccHHHHHHhcCCHHHHHHHHHc-CCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH--------hcCCCCCcHHHH
Q psy4236          89 SVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFL--------FFSSRGQTALHK  159 (208)
Q Consensus        89 ~~g~t~l~~a~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~--------~~~~~~~t~l~~  159 (208)
                      ..|.+.+|.++..+..-+++.+++. |-.  .... +..+...+|+ |..++.+.+-.++        -+|..|+||||+
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~~--~~el-d~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGSG--DLEL-DRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhcccccC--chhh-cccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3455666776666666666666664 221  1111 2345556666 3333444433332        235667777777


Q ss_pred             HHhhCCHHHHHHHHhCCCCC------cccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         160 AAMFKRRSICCMLVAGGASL------TVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       160 A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      |+.+|+..++..|.+.|++.      ......|.|+...|..+|+..+.-+|.+
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            77777777777777655443      2334457777777777777777766643

>KOG0521|consensus

Probab=97.92  E-value=1.2e-05  Score=68.39  Aligned_cols=68  Identities=22%  Similarity=0.301  Sum_probs=49.4

Q ss_pred             HHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHH
Q psy4236          74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICW  144 (208)
Q Consensus        74 ~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  144 (208)
                      ...|++.|+++|..|..|++|+|.+...|+...+..+++.|++  .+.. +..|++++++|....+.+++-
T Consensus       672 ~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~--~~a~-~~~~~~~l~~a~~~~~~d~~~  739 (785)
T KOG0521|consen  672 VELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD--PNAF-DPDGKLPLDIAMEAANADIVL  739 (785)
T ss_pred             HHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc--cccc-CccCcchhhHHhhhccccHHH
Confidence            3336666677777888888888888888888888888888887  5555 366888888876655444443

>KOG0520|consensus

Probab=97.46  E-value=0.00013  Score=62.51  Aligned_cols=82  Identities=20%  Similarity=0.202  Sum_probs=67.2

Q ss_pred             CCCCccHHHHHHhhCcHHHHHHHHh--------cCCCCCcHHHHHHhhCCHHHHHHHHh-CCCCCcccCCCCCCHHHHHH
Q psy4236         124 NDKGQTALHKAAMFKRRSICWMFLF--------FSSRGQTALHKAAMFKRRSICCMLVA-GGASLTVKDYDSNTPRALAL  194 (208)
Q Consensus       124 ~~~~~t~l~~a~~~~~~~~~~~l~~--------~~~~~~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~  194 (208)
                      ...|.+.+|+++..+....++.+++        .+..|...+|.|+..| .+++..|.. .|..++.+|..|+||||+|.
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg-~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALG-YEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcC-CceeEEEEeecccccccccCCCCcccchHh
Confidence            4568999999999998888888774        3567788888855554 455555554 89999999999999999999


Q ss_pred             HcCCHHHHHHHh
Q psy4236         195 LANDTELAAYLE  206 (208)
Q Consensus       195 ~~~~~~~~~~L~  206 (208)
                      .+|+..++.-|.
T Consensus       650 ~~G~e~l~a~l~  661 (975)
T KOG0520|consen  650 FRGREKLVASLI  661 (975)
T ss_pred             hcCHHHHHHHHH
Confidence            999999998876

>smart00248 ANK ankyrin repeats

Probab=97.36  E-value=0.00037  Score=32.44  Aligned_cols=28  Identities=21%  Similarity=0.309  Sum_probs=25.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCc
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLK   56 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~   56 (208)
                      +.++++.|+..++.++++.|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5689999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.35  E-value=0.00048  Score=32.04  Aligned_cols=28  Identities=32%  Similarity=0.430  Sum_probs=22.2

Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhCCCCCc
Q psy4236         153 GQTALHKAAMFKRRSICCMLVAGGASLT  180 (208)
Q Consensus       153 ~~t~l~~A~~~~~~~~~~~Ll~~g~~~~  180 (208)
                      +.+|+|+|+..++.++++.|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6788888888888888888888777654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.14  E-value=0.0006  Score=54.18  Aligned_cols=41  Identities=29%  Similarity=0.296  Sum_probs=39.1

Q ss_pred             CcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHH
Q psy4236         154 QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALAL  194 (208)
Q Consensus       154 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  194 (208)
                      -|+||+|+..|.-.++.+||+.|+|+.+.|..|+||..++.
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            58999999999999999999999999999999999998776

>KOG2505|consensus

Probab=97.02  E-value=0.003  Score=50.42  Aligned_cols=60  Identities=23%  Similarity=0.305  Sum_probs=46.2

Q ss_pred             HHHHHHHcCCCCC------cCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHH
Q psy4236          73 QLKDLHSQGYSLL------SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA  135 (208)
Q Consensus        73 ~~~~l~~~g~~~~------~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~  135 (208)
                      .+.+|.+++.+.|      ..+.-..|+||||+..|..+++.+||+.|.+  +..+ +..|.||...+.
T Consensus       406 ~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D--p~~k-d~~Grtpy~ls~  471 (591)
T KOG2505|consen  406 SIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD--PSTK-DGAGRTPYSLSA  471 (591)
T ss_pred             HHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC--chhc-ccCCCCcccccc
Confidence            3555555555443      2334467999999999999999999999988  6666 578999998876

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.44  E-value=0.13  Score=36.03  Aligned_cols=104  Identities=15%  Similarity=0.118  Sum_probs=76.2

Q ss_pred             CCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHH----HHhcC--CCC-------CcH
Q psy4236          90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM----FLFFS--SRG-------QTA  156 (208)
Q Consensus        90 ~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~----l~~~~--~~~-------~t~  156 (208)
                      ..++.+-.||+..+.++|+|+-.+=     ..   .+-.+.+..|....+.+....    +..+-  ..+       ..-
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qnL-----~i---~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~h  146 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQNL-----HI---YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQH  146 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhcc-----CC---CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHH
Confidence            4567788999999999999996542     21   234557778888777766332    12221  111       134


Q ss_pred             HHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         157 LHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       157 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      |..|+..|..+.+.-.++.|.+++.      +.+..|+.+++-.++.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            6789999999999999999999884      68999999999999998875

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.99  E-value=0.34  Score=34.05  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=26.5

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH
Q psy4236          95 LHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL  147 (208)
Q Consensus        95 l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  147 (208)
                      |..|+..|....+...++.|.+  +       ..++|..|+.+++..++.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~--~-------~~~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGN--V-------DIIVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCc--c-------cHHHHHHHHHhhHHHHHHHhh
Confidence            4566666666666666666644  2       225666666666666666554

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.90  E-value=0.15  Score=30.49  Aligned_cols=45  Identities=18%  Similarity=0.049  Sum_probs=23.9

Q ss_pred             HHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHh
Q psy4236         130 ALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVA  174 (208)
Q Consensus       130 ~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~  174 (208)
                      .+..|+.+|+.++++.+..........+..|+...+.+++++|++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~~~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKPDNDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHH
Confidence            445555555555555555433333444555555555566666555

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.83  E-value=0.11  Score=31.02  Aligned_cols=47  Identities=17%  Similarity=0.153  Sum_probs=38.6

Q ss_pred             cHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         155 TALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       155 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      .-+..|+..|+.++++.+++.+ .++      ..++..|+..-+-++++||+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4568999999999999999755 222      3579999999999999999863

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.81  E-value=0.67  Score=33.79  Aligned_cols=43  Identities=19%  Similarity=0.216  Sum_probs=28.3

Q ss_pred             CHHHHHHHHhCC-CCCccc---CCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         165 RRSICCMLVAGG-ASLTVK---DYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       165 ~~~~~~~Ll~~g-~~~~~~---~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +..++++.+++| +++|.+   -.+|.|-|+-|.++++.+++.+|++
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk  275 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLK  275 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHH
Confidence            355666666654 555543   3557777777777777777777765

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.01  E-value=0.5  Score=34.42  Aligned_cols=84  Identities=11%  Similarity=0.138  Sum_probs=39.1

Q ss_pred             HHHHHHHhCCHHHHHHHHHcC----CCCcccCCC--CCCC---ccchHHHHHHHHHHcCC-CCCc---CCCCCccHHHHH
Q psy4236          32 GVLKAARVGDIKMLKDLHSQG----YSLKKIPPK--DDHP---NLNHFFFQLKDLHSQGY-SLLS---IDSVGQTALHYG   98 (208)
Q Consensus        32 ~l~~A~~~g~~~~~~~Li~~g----~~~~~~~~~--~~~~---~~~~~~~~~~~l~~~g~-~~~~---~d~~g~t~l~~a   98 (208)
                      ++-.|+..+--+++.+|++.-    .|+-.....  +...   ..+....++++++..|. ++|.   +-..|.|-|--|
T Consensus       182 Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA  261 (284)
T PF06128_consen  182 AMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNA  261 (284)
T ss_pred             HHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhH
Confidence            667777777777777777641    111100000  0000   01223445555555543 2222   223455555555


Q ss_pred             HhcCCHHHHHHHHHcCC
Q psy4236          99 SRYGHKDVVKYIIACAP  115 (208)
Q Consensus        99 ~~~g~~~~~~~ll~~g~  115 (208)
                      ..+++.+++..|+++|+
T Consensus       262 ~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  262 MKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HhcCcHHHHHHHHHcCc
Confidence            55555555555555554

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	208
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-12
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-06
1uoh_A	226	Human Gankyrin Length = 226		7e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-04
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		3e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		3e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		8e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		8e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		8e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		9e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		9e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 10/142 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           ++KDL   G  + + DS G+T LHY ++ GHK++VK +I+      +N +D+D G+T LH
Sbjct: 19  RVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD--VNAKDSD-GRTPLH 75
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA    + I  + +          S G+T LH AA    + I  +L++ GA +   D D
Sbjct: 76  YAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSD 135
Query: 186 SNTPRALALLANDTELAAYLEK 207
             TP  LA    + E+   LEK
Sbjct: 136 GRTPLDLAREHGNEEIVKLLEK 157

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           ++KDL   G  + + DS G+T LH+ +  GHK+VVK +I+      +N +D+D G+T LH
Sbjct: 19  RVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD--VNAKDSD-GRTPLH 75
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA    + +  + +          S G+T LH AA    + +  +L++ GA +   D D
Sbjct: 76  HAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSD 135
Query: 186 SNTPRALALLANDTELAAYLEK 207
             TP  LA    + E+   LEK
Sbjct: 136 GRTPLDLAREHGNEEVVKLLEK 157

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           ++KDL   G    + DS G+T LHY +  GHK++VK +++       N +D+D G+T LH
Sbjct: 19  RVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADP--NAKDSD-GRTPLH 75
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA    + I  + L          S G+T LH AA    + I  +L++ GA     D D
Sbjct: 76  YAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSD 135
Query: 186 SNTPRALALLANDTELAAYLEK 207
             TP  LA    + E+   LEK
Sbjct: 136 GRTPLDLAREHGNEEIVKLLEK 157

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           ++KDL   G  + + DS G+T LH  +  GHK+VVK +++       N +D+D G+T LH
Sbjct: 19  RVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADP--NAKDSD-GKTPLH 75
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA    + +  + L          S G+T LH AA    + +  +L++ GA     D D
Sbjct: 76  LAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSD 135
Query: 186 SNTPRALALLANDTELAAYLEK 207
             TP  LA    + E+   LEK
Sbjct: 136 GRTPLDLAREHGNEEVVKLLEK 157

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
           G+T LH  +R GH +VVK ++       +N +D + G+T LH AA      +  + L   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG 58
Query: 151 S-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
           +        G+T LH AA      +  +L+  GA +  KD +  TP  LA
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 10/143 (6%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           +++ L + G  + + D  G T LH  +R GH ++V+ ++       +N +D D G T LH
Sbjct: 17  EVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKD-GYTPLH 73
Query: 133 KAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA      I  + L   +        G T LH AA      I  +L+  GA +  +D  
Sbjct: 74  LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 186 SNTPRALALLANDTELAAYLEKS 208
             TP  LA+   + ++A  L+K+
Sbjct: 134 GKTPFDLAIDNGNEDIAEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           +++ L + G  + + D  G T LH  +R GH ++V+ ++       +N +D D G T LH
Sbjct: 17  EVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKD-GYTPLH 73
Query: 133 KAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA      I  + L   +        G T LH AA      I  +L+  GA +  +D  
Sbjct: 74  LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 186 SNTPRALALLANDTELAAYLEKS 208
             TP  LA+     ++A  L+K+
Sbjct: 134 GKTPFDLAIREGHEDIAEVLQKA 156

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D   +TALH+    GH ++V++++       +N +D D G + LH AA   R  I    L
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKD-DAGWSPLHIAASAGRDEIVKALL 93
Query: 148 F-------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDS 186
                    +  G T LH AA   R  I  ML+ GGA+   KD YD+
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA 140

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           +++ L + G  + + D+ G T LH  +  GH ++V+ ++       +N  D+  G T L 
Sbjct: 29  EVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD--VNAVDH-AGMTPLR 85
Query: 133 KAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA+F    I  + L   +        G T LH AAMF    I  +L+  GA +  +D  
Sbjct: 86  LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
             T   +++   + +LA  L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D   +TALH+    GH ++V++++       +N +D D G + LH AA   R  I    L
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKD-DAGWSPLHIAASAGRDEIVKALL 94
Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
                    +  G T LH AA   R  I  ML+ GGA+   KD+
Sbjct: 95  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 138

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D   +TALH+    GH ++V++++       +N +D D G + LH AA   R  I    L
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKD-DAGWSPLHIAASAGRDEIVKALL 93
Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
                    +  G T LH AA   R  I  ML+ GGA+   KD+
Sbjct: 94  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           +++ L + G  + + D+ G T LH  + YGH ++V+ ++       +N  D   G T LH
Sbjct: 29  EVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD--VNAIDI-XGSTPLH 85
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA+     I  + L          + G T LH AA+     I  +L+  GA +  +D  
Sbjct: 86  LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
             T   +++   + +LA  L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIA-CAPSSILNMQDNDKGQTAL 131
           +++ L + G  + + D+ G T LH  + YGH ++V+ ++   A  + +++     G T L
Sbjct: 29  EVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM----GSTPL 84
Query: 132 HKAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
           H AA+     I  + L          + G T LH AA+     I  +L+  GA +  +D 
Sbjct: 85  HLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Query: 185 DSNTPRALALLANDTELAAYLEK 207
              T   +++   + +LA  L+K
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQK 167

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 16/149 (10%)
Query: 64  HPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD 123
           H  +  F  QL      G  +   D  G + LH  +  G  ++VK ++     + +N   
Sbjct: 52  HTEIVEFLLQL------GVPVNDKDDAGWSPLHIAASAGXDEIVKALLV--KGAHVNAV- 102
Query: 124 NDKGQTALHKAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGG 176
           N  G T LH AA   R  I  M L   +          TA+H+AA      +  +L+   
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162
Query: 177 ASLTVKDYDSNTPRALALLANDTELAAYL 205
           AS  ++D + NTP  LA      E A +L
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           +++ L + G  + + D VG T LH  + +GH ++V+ ++       +N  D   G T LH
Sbjct: 29  EVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD--VNAYDT-LGSTPLH 85
Query: 133 KAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA F    I  + L   +        G T LH AA      I  +L+  GA +  +D  
Sbjct: 86  LAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
             T   +++   + +LA  L+K
Sbjct: 146 GKTAFDISINNGNEDLAEILQK 167

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 38/164 (23%)
Query: 33  VLKAARVGDIKMLKDLHS-QGYSLKKIPPKDDHPNLNHF------FFQLKDLHSQGYSLL 85
           +L+AA+ GD++ +K L + Q  + + I  +   P   HF         ++ L   G  + 
Sbjct: 16  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL--HFAAGYNRVSVVEYLLQHGADVH 73
Query: 86  SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
           + D  G   LH    YGH +V + ++     +++N+ D                    W 
Sbjct: 74  AKDKGGLVPLHNACSYGHYEVAELLVK--HGAVVNVAD-------------------LWK 112
Query: 146 FLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
           F        T LH+AA   +  IC +L+  GA  T K+ D NTP
Sbjct: 113 F--------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 148

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 38/164 (23%)
Query: 33  VLKAARVGDIKMLKDLHS-QGYSLKKIPPKDDHPNLNHF------FFQLKDLHSQGYSLL 85
           +L+AA+ GD++ +K L + Q  + + I  +   P   HF         ++ L   G  + 
Sbjct: 14  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL--HFAAGYNRVSVVEYLLQHGADVH 71
Query: 86  SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
           + D  G   LH    YGH +V + ++     +++N+ D                    W 
Sbjct: 72  AKDKGGLVPLHNACSYGHYEVAELLVK--HGAVVNVAD-------------------LWK 110
Query: 146 FLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
           F        T LH+AA   +  IC +L+  GA  T K+ D NTP
Sbjct: 111 F--------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 146

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 38/164 (23%)
Query: 33  VLKAARVGDIKMLKDLHS-QGYSLKKIPPKDDHPNLNHF------FFQLKDLHSQGYSLL 85
           +L+AA+ GD++ +K L + Q  + + I  +   P   HF         ++ L   G  + 
Sbjct: 12  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL--HFAAGYNRVSVVEYLLQHGADVH 69
Query: 86  SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
           + D  G   LH    YGH +V + ++     +++N+ D                    W 
Sbjct: 70  AKDKGGLVPLHNACSYGHYEVAELLVK--HGAVVNVAD-------------------LWK 108
Query: 146 FLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
           F        T LH+AA   +  IC +L+  GA  T K+ D NTP
Sbjct: 109 F--------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 144

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 52  GYSLKKIPPKDDHPN-LNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYI 110
           G        ++D P  ++ F +Q   LH+Q       D  G+TALH  +RY   D  K +
Sbjct: 23  GLETGNSEEEEDAPAVISDFIYQGASLHNQ------TDRTGETALHLAARYSRSDAAKRL 76
Query: 111 IACAPSSILNMQDNDKGQTALHKA 134
           +    S+  N+QDN  G+T LH A
Sbjct: 77  LEA--SADANIQDN-MGRTPLHAA 97

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           +++ L + G  + + D  G T LH  +R GH ++V+ ++       +N +D D G T LH
Sbjct: 29  EVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKD-GYTPLH 85
Query: 133 KAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA      I  + L   +        G T LH AA      I  +L+  GA +  +D  
Sbjct: 86  LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLE 206
             T   +++   + +LA  L+
Sbjct: 146 GKTAFDISIDNGNEDLAEILQ 166

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 70  FFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQT 129
            + + ++L   GY +   D    T LH+ +     D+VKY I  +  +I++    D   T
Sbjct: 21  IYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI--SKGAIVDQLGGDLNST 78
Query: 130 ALHKAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVK 182
            LH A      S+    + + +        G + +H AA F   SI   L+A G  + + 
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 183 DYDSNTPRALA 193
           D +  TP   A
Sbjct: 139 DQNGMTPLMWA 149

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 99  SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-------FFSS 151
           +R G  D V+ ++A      +N  D  KG T LH AA +    I  + L          +
Sbjct: 22  ARAGQDDEVRILMANGAD--VNANDR-KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDN 78
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
            G T LH AA+F    I  +L+  GA +  +D    T   +++   + +LA  L+K
Sbjct: 79  DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 61  KDDHPN-LNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSIL 119
           ++D P  ++ F +Q   LH+Q       D  G+TALH  +RY   D  K ++    S+  
Sbjct: 33  EEDAPAVISDFIYQGASLHNQ------TDRTGETALHLAARYSRSDAAKRLLEA--SADA 84
Query: 120 NMQDNDKGQTALHKA 134
           N+QDN  G+T LH A
Sbjct: 85  NIQDN-MGRTPLHAA 98

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 70  FFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQT 129
           F +Q   LH+Q       D  G+TALH  +RY   D  K ++  +  +  N+QDN  G+T
Sbjct: 10  FIYQGASLHNQ------TDRTGETALHLAARYSRSDAAKRLLEASADA--NIQDN-MGRT 60
Query: 130 ALHKA 134
            LH A
Sbjct: 61  PLHAA 65

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 99  SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR------ 152
           +R G  D V+ ++A      +N +D D G+T LH AA+     I  + L   +       
Sbjct: 22  ARAGQDDEVRILMANGAD--VNAED-DSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADK 78
Query: 153 -GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
            G T LH AA++    I  +L+  GA +   D    TP  LA  A   E+   L K
Sbjct: 79  MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           +++ L + G  + + D  G T LH  +  GH ++V+ ++       +N +D D G T LH
Sbjct: 29  EVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD--VNARDTD-GWTPLH 85
Query: 133 KAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA      I  + L + +        G T LH AA      I  +L+  GA +  +D  
Sbjct: 86  LAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
             T   +++   + +LA  L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           +++ L + G  + + D +G T LH  ++ GH ++V+ ++       +N  DN  G T LH
Sbjct: 29  EVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD--VNAWDN-YGATPLH 85
Query: 133 KAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA      I  + L   +        G T LH AA      I  +L+  GA +  +D  
Sbjct: 86  LAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
             T   +++   + +LA  L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 68  NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKG 127
           N FF   + LHS+   LL  D  G+  LH+   +   ++  ++++   +  L+   +D G
Sbjct: 13  NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 128 QTALHKAAMFKRRSICWMFLF----------FSSRGQTALHKAAMFKRRSICCMLVAGGA 177
            T  H A       +    L+           +++G T LH A   K   +   L+  GA
Sbjct: 73  WTPFHIACSVGNLEVV-KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 178 SLTVKDYDSNTP 189
           S+ +KD  +  P
Sbjct: 132 SVRIKDKFNQIP 143

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 68  NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKG 127
           N FF   + LHS+   LL  D  G+  LH+   +   ++  ++++   +  L+   +D G
Sbjct: 13  NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 128 QTALHKAAMFKRRSICWMFLF----------FSSRGQTALHKAAMFKRRSICCMLVAGGA 177
            T  H A       +    L+           +++G T LH A   K   +   L+  GA
Sbjct: 73  WTPFHIACSVGNLEVV-KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 178 SLTVKDYDSNTP 189
           S+ +KD  +  P
Sbjct: 132 SVRIKDKFNQIP 143

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 68  NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKG 127
           N FF   + LHS+   LL  D  G+  LH+   +   ++  ++++   +  L+   +D G
Sbjct: 13  NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 128 QTALHKAAMFKRRSICWMFLF----------FSSRGQTALHKAAMFKRRSICCMLVAGGA 177
            T  H A       +    L+           +++G T LH A   K   +   L+  GA
Sbjct: 73  WTPFHIACSVGNLEVV-KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 178 SLTVKDYDSNTP 189
           S+ +KD  +  P
Sbjct: 132 SVRIKDKFNQIP 143

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           +++ L + G  + + D  G T LH  + +GH ++V+ ++       +N +D+  G T LH
Sbjct: 29  EVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD--VNAKDS-LGVTPLH 85
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA      I  + L          S G T LH AA      I  +L+  GA +  +D  
Sbjct: 86  LAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
             T   +++   + +LA  L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 91  GQTALHYGSRYGHKDVVKYIIA-CAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF--- 146
           G TALH    + H+  + +++   A    L++Q ND GQTALH AA+    S        
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAA 67
Query: 147 ----LFFSSRGQTALHKAAMFKRRSICCMLV 173
               L     G TALH A   +  +  C+L+
Sbjct: 68  GAGVLVAERGGHTALHLACRVRAHTCACVLL 98

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 91  GQTALHYGSRYGHKDVVKYIIA-CAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF--- 146
           G TALH    + H+  + +++   A    L++Q ND GQTALH AA+    S        
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAA 67
Query: 147 ----LFFSSRGQTALHKAAMFKRRSICCMLV 173
               L     G TALH A   +  +  C+L+
Sbjct: 68  GAGVLVAERGGHTALHLACRVRAHTCACVLL 98

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           +++ L + G  + + D+ G T LH  +  GH ++V+ ++       +N  D   G T LH
Sbjct: 29  EVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD--VNASDL-TGITPLH 85
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            AA      I  + L        + + G T LH AA +    I  +L+  GA +  +D  
Sbjct: 86  LAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLE 206
             T   +++   + +LA  L+
Sbjct: 146 GKTAFDISIDNGNEDLAEILQ 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-16
2rfa_A	232	Transient receptor potential cation channel subfa	8e-11
2rfa_A	232	Transient receptor potential cation channel subfa	4e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-14
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
2etb_A	256	Transient receptor potential cation channel subfam	2e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-05
2pnn_A	273	Transient receptor potential cation channel subfa	2e-10
2pnn_A	273	Transient receptor potential cation channel subfa	2e-08
2pnn_A	273	Transient receptor potential cation channel subfa	6e-08
2pnn_A	273	Transient receptor potential cation channel subfa	2e-06
2pnn_A	273	Transient receptor potential cation channel subfa	3e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 82.2 bits (204), Expect = 1e-19
 Identities = 31/133 (23%), Positives = 46/133 (34%), Gaps = 19/133 (14%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIA----CAPSSILNMQDNDKGQTALHKAAMFKRRSIC 143
           D  G T LH     G    V  +          SIL   + + G T LH A++     I 
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN-GHTCLHLASIHGYLGIV 133

Query: 144 WMFLFFSSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRAL 192
            + +   S G           +TALH A   +   +  +L+  GA +    Y   +P  L
Sbjct: 134 ELLV---SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190

Query: 193 ALLANDTELAAYL 205
                 T +   L
Sbjct: 191 TWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 73.4 bits (181), Expect = 3e-16
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 13/124 (10%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           +  G T LH  S +G+  +V+ +++  A    +N Q+   G+TALH A   +   +    
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLAVDLQNPDLV-SL 169

Query: 147 LF--------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND 198
           L          + +G +            I   L            +S    +    +  
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229

Query: 199 TELA 202
           TE  
Sbjct: 230 TEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 17/132 (12%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           +++ QT LH        ++ + ++         ++D   G T LH A      +   +  
Sbjct: 42  NNLQQTPLHLAVITNQPEIAEALLGAGCD--PELRDFR-GNTPLHLACEQGCLASVGVLT 98

Query: 148 -------------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDSNTPRALA 193
                          +  G T LH A++     I  +LV+ GA +  ++  +  T   LA
Sbjct: 99  QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158

Query: 194 LLANDTELAAYL 205
           +   + +L + L
Sbjct: 159 VDLQNPDLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 29/117 (24%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSS--ILNMQDNDKGQTALHKAAMFKRRSICWMFLF 148
           G + LH    +  K +   +I         LN Q+N                        
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL----------------------- 44

Query: 149 FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
                QT LH A +  +  I   L+  G    ++D+  NTP  LA           L
Sbjct: 45  ----QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 78.4 bits (194), Expect = 7e-18
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 15/141 (10%)

Query: 77  LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAM 136
                  L + +  G T LH    +   ++V+ +      + LN  +   G+T LH A  
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA--GADLNKPEPTCGRTPLHLAVE 201

Query: 137 FKRRSICWMFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
            +  S+  + L     G          +T L  A +     +  +L A GA       D 
Sbjct: 202 AQAASVLELLL---KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258

Query: 187 NTPRALALLANDTELAAYLEK 207
            +P + +   +D++     ++
Sbjct: 259 LSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 28/116 (24%)

Query: 91  GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
           G TALH    + H+  + +++   A    L++Q++                         
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL------------------------ 44

Query: 150 SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
              GQTALH AA+    S    L A GA + V +   +T   LA        A  L
Sbjct: 45  ---GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALHKAAMFKRRSIC--- 143
           + +GQTALH  +  G    V+ +  A A    + + +   G TALH A   +  +     
Sbjct: 42  NDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAERG-GHTALHLACRVRAHTCACVL 97

Query: 144 --------------WMFLFFSSRGQT----ALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
                         ++         T    A   +                  L  ++YD
Sbjct: 98  LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157

Query: 186 SNTPRALALLANDTELAAYL 205
            +TP  +A++  D E+   L
Sbjct: 158 GHTPLHVAVIHKDAEMVRLL 177

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.5 bits (192), Expect = 4e-17
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 14/129 (10%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           +  G T LH  ++ GH  V   +I       ++      G T LH A+ +    +  +  
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVM--VDATTRM-GYTPLHVASHYGNIKL--VKF 329

Query: 148 FFSSR---------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND 198
               +         G + LH+AA      I  +L+  GAS      D  TP A+A     
Sbjct: 330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 389

Query: 199 TELAAYLEK 207
             +   L+ 
Sbjct: 390 ISVTDVLKV 398

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 33/129 (25%), Positives = 45/129 (34%), Gaps = 18/129 (13%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
              G T LH  ++YG   V + ++   A     N    + G T LH A       I  + 
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAH---PNAAGKN-GLTPLHVAVHHNNLDIVKLL 198

Query: 147 LFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
           L    RG           T LH AA   +  +   L+  G S   +     TP  LA   
Sbjct: 199 L---PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255

Query: 197 NDTELAAYL 205
              E+ A L
Sbjct: 256 GHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 2e-15
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 10/125 (8%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
               QT LH  +R GH ++VK ++    +   N+     G T LH AA           L
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNAN--PNLATTA-GHTPLHIAAREGHVETVLALL 133

Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
                    + +G T LH AA + +  +  +L+   A       +  TP  +A+  N+ +
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 193

Query: 201 LAAYL 205
           +   L
Sbjct: 194 IVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 3e-15
 Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 10/125 (8%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
              G T LH  S  GH  +VK ++    S   N+ +    +T LH AA      +    L
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGAS--PNVSNVK-VETPLHMAARAGHTEVAKYLL 67

Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
                    +   QT LH AA     ++  +L+   A+  +     +TP  +A      E
Sbjct: 68  QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 127

Query: 201 LAAYL 205
               L
Sbjct: 128 TVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 3e-15
 Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 79  SQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFK 138
            +G S    +   +T LH  +R GH +V KY++       +N +  D  QT LH AA   
Sbjct: 35  QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK--VNAKAKD-DQTPLHCAARIG 91

Query: 139 RRSICWMFLFF--------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPR 190
             ++    L          ++ G T LH AA          L+   AS         TP 
Sbjct: 92  HTNMV-KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL 150

Query: 191 ALALLANDTELAAYL 205
            +A       +A  L
Sbjct: 151 HVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.9 bits (167), Expect = 1e-13
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
              G T LH  ++ GH ++V  +++  A     N+ +   G T LH  A      +  + 
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQAN---GNLGNKS-GLTPLHLVAQEGHVPVADVL 297

Query: 147 LFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
           +         +  G T LH A+ +    +   L+   A +  K     +P   A     T
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357

Query: 200 ELAAYL 205
           ++   L
Sbjct: 358 DIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 64.4 bits (158), Expect = 2e-12
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 19/128 (14%)

Query: 75  KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTAL 131
             L   G  + +   +G T LH  S YG+  +VK+++   A      +N +    G + L
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-----VNAKTKL-GYSPL 348

Query: 132 HKAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCML---VAGGASLTV 181
           H+AA      I  + L         SS G T L  A      S+  +L       + + V
Sbjct: 349 HQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV 408

Query: 182 KDYDSNTP 189
            D    + 
Sbjct: 409 SDKHRMSF 416

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 74.0 bits (183), Expect = 6e-17
 Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 15/128 (11%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
                  +    R G+   V+  +    + + N  D+  G + LH A    R ++  M +
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDL-NQGDDH-GFSPLHWACREGRSAVVEMLI 59

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
               RG           T LH AA    R I   L+   A +   +   N P   A    
Sbjct: 60  ---MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG 116

Query: 198 DTELAAYL 205
             ++A  L
Sbjct: 117 QDQVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 69.0 bits (170), Expect = 4e-15
 Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D  G + LH+  R G   VV+ +I       +N+ +     T LH AA    R I    L
Sbjct: 36  DDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRG-DDTPLHLAASHGHRDIVQKLL 92

Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
                    +  G   LH A  + +  +   LVA GA +++ +     P   A       
Sbjct: 93  QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 152

Query: 201 LAAYL 205
           L    
Sbjct: 153 LRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 61.7 bits (151), Expect = 3e-12
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 16/107 (14%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           +    T LH  + +GH+D+V+ ++       +N  +   G   LH A  + +  +    +
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKAD--INAVNEH-GNVPLHYACFWGQDQVAEDLV 125

Query: 148 FFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
              +           G+  + KA    R  +       G +L    Y
Sbjct: 126 ---ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPY 169

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 74.6 bits (184), Expect = 1e-16
 Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 24/143 (16%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMF------- 137
            ++G+TALH  + Y + +    ++          +  +  + GQTALH A +        
Sbjct: 34  GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYE-GQTALHIAVINQNVNLVR 92

Query: 138 -------------KRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
                              +        G+  L  AA      I  +L+  GA +  +D 
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152

Query: 185 DSNTPRALALLANDTELAAYLEK 207
             NT   + +L  +   A  +  
Sbjct: 153 LGNTVLHILILQPNKTFACQMYN 175

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 14/121 (11%)

Query: 90  VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
           + ++ L   ++      +  ++      + + +    G+TALH AA++       + +  
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAM-GETALHIAALYDNLEAAMVLMEA 59

Query: 150 ------------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
                          GQTALH A + +  ++   L+A GAS++ +   S        L  
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 198 D 198
            
Sbjct: 120 Y 120

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 74.1 bits (182), Expect = 1e-16
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 12/135 (8%)

Query: 79  SQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMF 137
           +        D   +TALH+    GH ++V++++    P   +N +D+  G + LH AA  
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDA-GWSPLHIAASA 83

Query: 138 KRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPR 190
               I    L   +        G T LH AA   R  I  ML+ GGA+   KD+   T  
Sbjct: 84  GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143

Query: 191 ALALLANDTELAAYL 205
             A    + ++   L
Sbjct: 144 HRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.8 bits (163), Expect = 8e-14
 Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 18/126 (14%)

Query: 91  GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
                +        ++ + I+A  +        D D  +TALH A       I    L  
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSL---ATRTDQD-SRTALHWACSAGHTEIVEFLL-- 60

Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
              G           + LH AA      I   L+  GA +   + +  TP   A   N  
Sbjct: 61  -QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119

Query: 200 ELAAYL 205
           E+A  L
Sbjct: 120 EIAVML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 62.6 bits (152), Expect = 3e-12
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 10/125 (8%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D  G + LH  +  G  ++VK ++       +N  + + G T LH AA   R  I  M L
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAH--VNAVNQN-GCTPLHYAASKNRHEIAVMLL 126

Query: 148 FFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
              +          TA+H+AA      +  +L+   AS  ++D + NTP  LA      E
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186

Query: 201 LAAYL 205
            A +L
Sbjct: 187 EAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 12/139 (8%)

Query: 74  LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
           +K L  +G  + +++  G T LHY +     ++   ++    +   + +D+    TA+H+
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN--PDAKDHY-DATAMHR 145

Query: 134 AAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
           AA      +  + LF+ +        G T LH A   +R      LV  GAS+ +++ + 
Sbjct: 146 AAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE 205

Query: 187 NTPRALALLANDTELAAYL 205
            TP  L +      L    
Sbjct: 206 KTP--LQVAKGGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 7/92 (7%)

Query: 121 MQDNDKGQTALHKAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLV 173
           M+         + A   K   +    L             +TALH A       I   L+
Sbjct: 1   MEGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 174 AGGASLTVKDYDSNTPRALALLANDTELAAYL 205
             G  +  KD    +P  +A  A   E+   L
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 73.3 bits (181), Expect = 1e-16
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 18/130 (13%)

Query: 87  IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           + S  +T     +R   +  +  ++       ++  D + G+TAL   A         + 
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDRD---VDAVDEN-GRTALLFVAGLGSDKCVRLL 95

Query: 147 LFFSSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALL 195
                 G            TALH AA + R  +   LV  GA + V+D    T   LA  
Sbjct: 96  A---EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152

Query: 196 ANDTELAAYL 205
              T      
Sbjct: 153 ILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 64.8 bits (159), Expect = 2e-13
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 17/107 (15%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           D  G+TAL + +  G    V+ +    A    L+ +D   G TALH AA + R  +    
Sbjct: 73  DENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALHMAAGYVRPEVVEAL 129

Query: 147 LFFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
           +               G TAL  A    + +     +  G  + ++ 
Sbjct: 130 V---ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 23/126 (18%), Positives = 31/126 (24%), Gaps = 15/126 (11%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD-NDKGQTALHKAAMFKRRSICWMF 146
              G        + GH          A        D   + +T    AA           
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAA-------DVVSEYETPWWTAARKADEQALSQL 63

Query: 147 L------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDSNTPRALALLANDT 199
           L           G+TAL   A         +L   GA L  +D     T   +A      
Sbjct: 64  LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 123

Query: 200 ELAAYL 205
           E+   L
Sbjct: 124 EVVEAL 129

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 11/126 (8%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
                  LH  ++ G+   ++  +       +N  D   G TAL+ A     + I  M  
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVG--VNGLDKA-GSTALYWACHGGHKDIVEMLF 126

Query: 148 FFS--------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
                        G TALH AA      I  +L+A GA   +++ +      +A  A   
Sbjct: 127 TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACA 186

Query: 200 ELAAYL 205
            L    
Sbjct: 187 SLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D  G TAL++    GHKD+V+ +       + N Q+   G TALH AA      I  + L
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKL-GDTALHAAAWKGYADIVQLLL 160

Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
                    +   + A   A      S+        A  T+ + +       +
Sbjct: 161 AKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 14/117 (11%), Positives = 25/117 (21%), Gaps = 5/117 (4%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR--RSICWMFLF 148
           GQ  +              +        +    +    T   K     R           
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGD--IIYITDM-SDTNWWKGTSKGRTGLIPSNYVAE 68

Query: 149 FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
            +      LH+AA     S     +     +   D   +T    A      ++   L
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 2/48 (4%), Positives = 13/48 (27%), Gaps = 3/48 (6%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
           +   + A    +      ++K        ++  + + +        + 
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQ--GTDAVRTLSNAE-DYLDDEDSD 214

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 72.0 bits (178), Expect = 2e-16
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 16/129 (12%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D +G + LH  ++YGH    + ++    S   + +     +T LH AA     +I  + L
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVS--RDARTKV-DRTPLHMAASEGHANIVEVLL 87

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
                G           TALH A     + +  +L+  GA +  +     T   +++   
Sbjct: 88  ---KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG 144

Query: 198 DTELAAYLE 206
           + +LA  L+
Sbjct: 145 NEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 64.3 bits (158), Expect = 1e-13
 Identities = 31/126 (24%), Positives = 45/126 (35%), Gaps = 19/126 (15%)

Query: 91  GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
               L   +R G  D V+ ++A  A         +  G + LH AA +   S   + L  
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGA-----PFTTDWLGTSPLHLAAQYGHFSTTEVLL-- 54

Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
              G          +T LH AA     +I  +L+  GA +  KD    T    A   N  
Sbjct: 55  -RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 200 ELAAYL 205
           E+   L
Sbjct: 114 EVVELL 119

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 70.9 bits (175), Expect = 3e-16
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 12/128 (9%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           +  G+T LH  S  G    V+Y++   +     N++D+  G T LH+A       +  + 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHA-GWTPLHEACNHGHLKVVELL 62

Query: 147 LFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
           L           +  + LH AA      I  +L++ GAS    +     P       +  
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK 122

Query: 200 ELAAYLEK 207
            L    EK
Sbjct: 123 SLLLLPEK 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 71.7 bits (177), Expect = 4e-16
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 15/129 (11%)

Query: 87  IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
            +S     L   ++ G  + VK +      +     +     T LH AA + R S+    
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNC-RDIEGR-QSTPLHFAAGYNRVSVVEYL 61

Query: 147 LFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
           L     G             LH A  +    +  +LV  GA + V D    TP   A   
Sbjct: 62  L---QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK 118

Query: 197 NDTELAAYL 205
              E+   L
Sbjct: 119 GKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 68.2 bits (168), Expect = 7e-15
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 13/126 (10%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           +    T LH+ + Y    VV+Y++   A    ++ +D   G   LH A  +    +  + 
Sbjct: 39  EGRQSTPLHFAAGYNRVSVVEYLLQHGAD---VHAKDKG-GLVPLHNACSYGHYEVAELL 94

Query: 147 LFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
           +              T LH+AA   +  IC +L+  GA  T K+ D NTP  L     DT
Sbjct: 95  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDT 153

Query: 200 ELAAYL 205
           ++   L
Sbjct: 154 DIQDLL 159

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 72.9 bits (180), Expect = 5e-16
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           +  G TALH       ++ V+ ++     + ++  D   G++ L  A      S+  + L
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLER--GADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
                G           +ALH A+      +   LV  GA  ++K+  ++TP  +A    
Sbjct: 171 ---QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227

Query: 198 DTELAAYL 205
             ++    
Sbjct: 228 VIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.2 bits (173), Expect = 5e-15
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 20/134 (14%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSS--ILNMQDNDKGQTALHKAAMFKRRSICWM 145
           D  G T LH     G+   V  ++         L++ +N   QT LH A +    S+  +
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRL 64

Query: 146 FLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTV----KDYDSNTPRA 191
            +   + G          QTA H A   +  +    L+   A  T+    ++YD  T   
Sbjct: 65  LV---TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 192 LALLANDTELAAYL 205
           +A+     E    L
Sbjct: 122 VAVNTECQETVQLL 135

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 58.6 bits (143), Expect = 7e-11
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 14/97 (14%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
           G++ L +        +V+ ++    +  +N Q    G +ALH A+      +    +   
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGAN--VNAQMYS-GSSALHSASGRGLLPLVRTLV--R 204

Query: 151 ---------SRGQTALHKAAMFKRRSICCMLVAGGAS 178
                        T L  A   +   I        AS
Sbjct: 205 SGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.5 bits (179), Expect = 6e-16
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 79  SQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAA 135
             GY +   D    T LH+ +     D+VKY I   A     I++    D   T LH A 
Sbjct: 30  EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA-----IVDQLGGDLNSTPLHWAT 84

Query: 136 MFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNT 188
                S+    + +          G + +H AA F   SI   L+A G  + + D +  T
Sbjct: 85  RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT 144

Query: 189 P 189
           P
Sbjct: 145 P 145

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.5 bits (179), Expect = 7e-16
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 12/127 (9%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D  G + +H  +++GH  +V Y+IA      ++M D + G T L  AA           L
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQD--VDMMDQN-GMTPLMWAAYRTHSVDPTRLL 162

Query: 148 FF---------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND 198
                           TALH A +    ++  +L+  GA++  ++    +   LA    +
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222

Query: 199 TELAAYL 205
             +  +L
Sbjct: 223 VWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 69.8 bits (172), Expect = 6e-15
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 19/132 (14%)

Query: 86  SIDSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICW 144
            ID      +   ++YG  +  + ++        +   D +   T LH AA+  R  +  
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYD---VRQPDKE-NVTLLHWAAINNRIDLVK 59

Query: 145 MFLFFSSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
            ++   S+G            T LH A      S+   L+  GA  ++ D +  +   LA
Sbjct: 60  YYI---SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116

Query: 194 LLANDTELAAYL 205
                T + AYL
Sbjct: 117 AQFGHTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 58.6 bits (143), Expect = 7e-11
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 16/107 (14%)

Query: 88  DSVGQTALHYGSRYGH-KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           D  G T L + +   H  D  + ++    S  +N+ D     TALH A +    ++  + 
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVS--VNLGDKYHKNTALHWAVLAGNTTVISLL 196

Query: 147 LFFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
           L               G++AL  A   K   +   L     +    +
Sbjct: 197 L---EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 5/37 (13%), Positives = 17/37 (45%)

Query: 75  KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII 111
             L   G ++ + +  G++AL    +  +  ++ ++ 
Sbjct: 194 SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 73.7 bits (182), Expect = 6e-16
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           D    T LH  + Y    +V+ ++   A    ++ +D   G   LH A  +    +  + 
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGAD---VHAKDKG-GLVPLHNACSYGHYEVTELL 110

Query: 147 L-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
           L              T LH+AA   R  +C +L++ GA  T+ +    +   +A      
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR 170

Query: 200 ELAAYL 205
           E   Y 
Sbjct: 171 ERLTYE 176

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 17/142 (11%)

Query: 75  KDLHSQGYSLLSIDSVGQTALHYGSRYGH-KDVVKYIIACAPSSILNMQDNDKGQTALHK 133
            DL       +      +  L   +R G+ + ++  +     +   +  D     T LH 
Sbjct: 8   LDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN--CHASDGR-KSTPLHL 64

Query: 134 AAMFKRRSICWMFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKD 183
           AA + R  I  + L     G             LH A  +    +  +L+  GA +   D
Sbjct: 65  AAGYNRVRIVQLLL---QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121

Query: 184 YDSNTPRALALLANDTELAAYL 205
               TP   A   N  E+ + L
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 25/115 (21%)

Query: 91  GQTALHYGSRYGH---KDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
            +TALH      H   K V + ++          +N ++ D   T LH AA      +  
Sbjct: 211 HETALHCAVASLHPKRKQVAELLL-----RKGANVNEKNKD-FMTPLHVAAERAHNDVME 264

Query: 145 MFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
           +       G          QTALH+AA+      C +L++ G+  ++      T 
Sbjct: 265 VLH---KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 30/144 (20%)

Query: 91  GQTALHYGSRYGHKDVVKY-------IIACAPS------------SILNMQDNDKGQTAL 131
           G++A+        ++ + Y       + A   +             I   Q     +TAL
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS-HETAL 215

Query: 132 HKAAM---FKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTV 181
           H A      KR+ +  + L         +    T LH AA      +  +L   GA +  
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275

Query: 182 KDYDSNTPRALALLANDTELAAYL 205
            D    T    A LA   +    L
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           +    T LH  +   H DV++ +      + +N  D+  GQTALH+AA+      C + L
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKH--GAKMNALDSL-GQTALHRAALAGHLQTCRLLL 300

Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
            +       S +G TA               +++    +   D D
Sbjct: 301 SYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVD 340

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 70.1 bits (173), Expect = 1e-15
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICW 144
           D  G T L + + +G   VV++++   A        +      ++AL  A       I  
Sbjct: 33  DEEGFTPLMWAAAHGQIAVVEFLLQNGAD-----PQLLGKG-RESALSLACSKGYTDIVK 86

Query: 145 MFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
           M L            G T L  A          ML+  GA  T++         LA+   
Sbjct: 87  MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146

Query: 198 DTELAAYL 205
              +   +
Sbjct: 147 YRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 67.8 bits (167), Expect = 1e-14
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 16/125 (12%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
              ++H  +  G    +   I       +N  D + G T L  AA   + ++    L   
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENV--INHTDEE-GFTPLMWAAAHGQIAVVEFLL--- 56

Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
             G          ++AL  A       I  ML+  G  +   D++  TP   A+  N  +
Sbjct: 57  QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK 116

Query: 201 LAAYL 205
               L
Sbjct: 117 CVKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 63.6 bits (156), Expect = 4e-13
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 16/108 (14%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
               ++AL      G+ D+VK ++ C     +N  D + G T L  A          M L
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVD--VNEYDWN-GGTPLLYAVHGNHVKCVKMLL 122

Query: 148 FFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
                          G  ++  A     RS+  ++ +    L     +
Sbjct: 123 ---ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 18/130 (13%)

Query: 87  IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           + S  +T     +R   +  +  ++       ++  D + G+TAL   A         + 
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRD---VDAVDEN-GRTALLFVAGLGSDKCVRLL 96

Query: 147 LFFSSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALL 195
                 G            TALH AA + R  +   LV  GA + V+D    T   LA  
Sbjct: 97  A---EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153

Query: 196 ANDTELAAYL 205
              T      
Sbjct: 154 ILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 69.6 bits (171), Expect = 9e-15
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 20/131 (15%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           D  G+TAL + +  G    V+ +    A    L+ +D   G TALH AA + R  +    
Sbjct: 74  DENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALHMAAGYVRPEVVEAL 130

Query: 147 LFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
           +     G           TAL  A    + +     +  G  + ++            + 
Sbjct: 131 V---ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVF 184

Query: 197 NDTELAAYLEK 207
              E+   +EK
Sbjct: 185 EYAEVDEIVEK 195

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 23/126 (18%), Positives = 31/126 (24%), Gaps = 15/126 (11%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD-NDKGQTALHKAAMFKRRSICWMF 146
              G        + GH          A        D   + +T    AA           
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAA-------DVVSEYETPWWTAARKADEQALSQL 64

Query: 147 L------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDSNTPRALALLANDT 199
           L           G+TAL   A         +L   GA L  +D     T   +A      
Sbjct: 65  LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 200 ELAAYL 205
           E+   L
Sbjct: 125 EVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 7/99 (7%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D  G TAL               +              +    + +  +F+   +  + +
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRI------GLEKVINVLEGQVFEYAEVDEI-V 193

Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
               +G+   +            +     A    KDY+ 
Sbjct: 194 EKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED 232

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 15/125 (12%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
               L    +    D+V+ ++    +  +N Q+ + G T LH A    R  I  + L   
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLL--- 59

Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
             G           T    AA+     +  + ++ GA +   D+   T    A +    +
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 201 LAAYL 205
              +L
Sbjct: 120 ALKFL 124

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 67.5 bits (166), Expect = 7e-14
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 81  GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRR 140
                 +   G TAL   +  GH +V+K ++    + + N  DN  G+ AL  A +    
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNM-GRNALIHALLSSDD 195

Query: 141 SICWMFLFF-----------SSRGQTALHKAAMFKRRSICCMLVA-GGASLTVKDYDSNT 188
           S                     RG+T L  A   K   +   L+      +   D D  T
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 189 PRALALLANDTELAAYL 205
              LA+     ++A  L
Sbjct: 256 ALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 29/139 (20%), Positives = 44/139 (31%), Gaps = 23/139 (16%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII-------ACAPSSILNMQDNDKGQTALHKAAMFKRR 140
           D  G TA    + YG    +K++            +     +    G TAL  AA     
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 141 SICWMFLFFSSRG----------QTALHKAAMFKRRSICC----MLVAGGASLTVKDYDS 186
            +  + L     G          + AL  A +    S       +L+  GA + V+    
Sbjct: 162 EVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219

Query: 187 NTPRALALLANDTELAAYL 205
            TP  LA+      L   L
Sbjct: 220 KTPLILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.9 bits (149), Expect = 2e-11
 Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 21/120 (17%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC---- 143
              G T     +  G   ++K  ++    + +N  D   G TA  +AA++ +        
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFY-GFTAFMEAAVYGKVKALKFLY 125

Query: 144 -------------WMFLFFSSRGQTALHKAAMFKRRSICCMLVA-GGASLTVKDYDSNTP 189
                                 G TAL  AA      +  +L+   GA +   D      
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.4 bits (145), Expect = 6e-11
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 18/113 (15%)

Query: 91  GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
           G T LH   +   +D+V+ ++   A      ++  + G T    AA+     +  +FL  
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGAD---PVLRKKN-GATPFLLAAIAGSVKLLKLFL-- 92

Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRAL 192
            S+G           TA  +AA++ +      L   GA++ ++         L
Sbjct: 93  -SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL 144

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII 111
           DS G+TAL        K + + + 
Sbjct: 250 DSDGKTALLLAVELKLKKIAELLC 273

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 70.9 bits (175), Expect = 2e-15
 Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 15/129 (11%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D  G T  H     G+ +VVK +        LN   N  G T LH A   K   +    +
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLI 127

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLV-AGGASLTVKDYDSNTPRALALLA 196
                G          Q  LH+AA      +  +L   G +++  +D    TP   AL  
Sbjct: 128 ---ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184

Query: 197 NDTELAAYL 205
              + A  L
Sbjct: 185 GHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 11/139 (7%)

Query: 77  LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAA 135
           LHS+   LL  D  G+  LH+   +   ++  ++++     ++ +  D+  G T  H A 
Sbjct: 22  LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS-GWTPFHIAC 80

Query: 136 MFKRRSICWMFLFFSS---------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
                 +                  +G T LH A   K   +   L+  GAS+ +KD  +
Sbjct: 81  SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN 140

Query: 187 NTPRALALLANDTELAAYL 205
             P   A      +L   L
Sbjct: 141 QIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 14/128 (10%)

Query: 90  VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-- 147
           +    LH          V+ ++   PS +   +D D G+  LH +  F+   I    L  
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLL-LQKDQD-GRIPLHWSVSFQAHEITSFLLSK 58

Query: 148 --------FFSSRGQTALHKAAMFKRRSICCMLV--AGGASLTVKDYDSNTPRALALLAN 197
                   +    G T  H A       +   L        L        T   LA+   
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 118

Query: 198 DTELAAYL 205
             E++ +L
Sbjct: 119 WFEVSQFL 126

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 53.2 bits (129), Expect = 6e-09
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
           D  G T L +    GH D    ++    +   ++ DN  G  A   A 
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNK-GAKAEDVAL 216

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 69.8 bits (172), Expect = 2e-15
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 15/125 (12%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
              ++H  +  G  D +K  +    + + N  D   G T L  A+ F         L   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLV-NKPDER-GFTPLIWASAFGEIETVRFLL--- 56

Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
             G          ++AL  A+      I  +L+     + + D++  TP   A+  N  +
Sbjct: 57  EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK 116

Query: 201 LAAYL 205
               L
Sbjct: 117 CVEAL 121

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 69.0 bits (170), Expect = 4e-15
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           D  G T L + S +G  + V++++   A     ++   +  ++AL  A+      I  + 
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKE-RESALSLASTGGYTDIVGLL 88

Query: 147 LFFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
           L    R          G T L  A           L+A GA LT +     TP  LA+  
Sbjct: 89  L---ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145

Query: 197 NDTELAAYL 205
              ++   +
Sbjct: 146 GYRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 55.5 bits (135), Expect = 4e-10
 Identities = 16/102 (15%), Positives = 26/102 (25%), Gaps = 29/102 (28%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D  G T L Y  R  H   V+ ++A      L  + +                       
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLARGAD--LTTEADS---------------------- 134

Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
                G T +  A     R +  ++      L   +     P
Sbjct: 135 -----GYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.0 bits (175), Expect = 3e-15
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 15/128 (11%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D  G+TALH  +RY   D  K ++  +     N+QDN  G+T LH A     + +  + +
Sbjct: 54  DRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNM-GRTPLHAAVSADAQGVFQILI 110

Query: 148 FFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
              +R          G T L  AA      +   L+   A +   D    +    A   N
Sbjct: 111 --RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 168

Query: 198 DTELAAYL 205
           + + A  L
Sbjct: 169 NVDAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 56.7 bits (138), Expect = 4e-10
 Identities = 33/142 (23%), Positives = 46/142 (32%), Gaps = 35/142 (24%)

Query: 91  GQTALHYGSRYG-------------HKDVVKYII---ACAPSSILNMQDNDKGQTALHKA 134
           G T L   S  G                V+   I   A    S+ N  D   G+TALH A
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA----SLHNQTDRT-GETALHLA 64

Query: 135 AMFKRRSICWMFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGAS-LTVKD 183
           A + R       L                +T LH A     + +  +L+   A+ L  + 
Sbjct: 65  ARYSRSDAAKRLL---EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 184 YDSNTPRALALLANDTELAAYL 205
           +D  TP  LA       +   L
Sbjct: 122 HDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 56.3 bits (137), Expect = 5e-10
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 29/118 (24%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D +G++ALH+ +   + D    ++    +   +MQ+N                       
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGAN--KDMQNNR---------------------- 189

Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
                 +T L  AA         +L+   A+  + D+    PR +A      ++   L
Sbjct: 190 -----EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 22/107 (20%)

Query: 120 NMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR---------------------GQTALH 158
           N++  D G T L  A+                                      G+TALH
Sbjct: 4   NVRGPD-GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 159 KAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
            AA + R      L+   A   ++D    TP   A+ A+   +   L
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.1 bits (173), Expect = 4e-15
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 22/131 (16%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
           D  G T + + + Y H D+VK ++     S    +N++DN+     LH AA      I  
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLL-----SKGSDINIRDNE-ENICLHWAAFSGCVDIAE 161

Query: 145 MFLFFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALAL 194
           + L   +           G + LH AA   R     + ++  + +T+K+ +  TP   A 
Sbjct: 162 ILL---AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218

Query: 195 LANDTELAAYL 205
           L +    A  +
Sbjct: 219 LNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.9 bits (162), Expect = 2e-13
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 17/129 (13%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
               ++ LH  +  GH D+   ++    +  ++    D  +T L +AA           +
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGAN--IDTCSED-QRTPLMEAAENNHLEAVKYLI 64

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGAS-LTVKDYDSNTPRALALLA 196
                G           T LH AA      +   L++ G   +  +D    TP   A   
Sbjct: 65  ---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 197 NDTELAAYL 205
              +L   L
Sbjct: 122 KHVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.7 bits (146), Expect = 3e-11
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 16/111 (14%)

Query: 77  LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAM 136
           L S+G  +   D+     LH+ +  G  D+ + ++A      L+  +   G + LH AA 
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD--LHAVNIH-GDSPLHIAAR 186

Query: 137 FKRRSICWMFLFFSSR----------GQTALHKAAMFKRRSICCMLVAGGA 177
             R     +FL   SR          G+T L  A++  +      +     
Sbjct: 187 ENRYDCVVLFL---SRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 69.4 bits (171), Expect = 9e-15
 Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 17/129 (13%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           D  G+TALH  +RY   D  K ++   A     N+QDN  G+T LH A     + +    
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASAD---ANIQDNM-GRTPLHAAVSADAQGV--FQ 75

Query: 147 LFFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
           +   +R          G T L  AA      +   L+   A +   D    +    A   
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135

Query: 197 NDTELAAYL 205
           N+ + A  L
Sbjct: 136 NNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 56.3 bits (137), Expect = 4e-10
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D +G++ALH+ +   + D    ++    +   +MQ+N   +T L  AA         + L
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGAN--KDMQNNR-EETPLFLAAREGSYETAKVLL 178

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGA 177
                           +     A       I  +L     
Sbjct: 179 ---DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 22/118 (18%)

Query: 102 GHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRG----- 153
               V+   I   A    S+ N  D   G+TALH AA + R       L           
Sbjct: 2   DAPAVISDFIYQGA----SLHNQTDRT-GETALHLAARYSRSDAAKRLL---EASADANI 53

Query: 154 -----QTALHKAAMFKRRSICCMLVAGGAS-LTVKDYDSNTPRALALLANDTELAAYL 205
                +T LH A     + +  +L+   A+ L  + +D  TP  LA       +   L
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.8 bits (167), Expect = 2e-14
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 22/131 (16%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
           D  G TAL +  +     + + ++     S    +N +D   G+T L  + +F    + +
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLL-----SKGSNVNTKDFS-GKTPLMWSIIFGYSEMSY 118

Query: 145 MFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALAL 194
             L     G          +T L  A+ + R  I   L+  GA ++ +D    T  A A 
Sbjct: 119 FLL---EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175

Query: 195 LANDTELAAYL 205
           +    E+    
Sbjct: 176 IFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.4 bits (166), Expect = 2e-14
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 18/129 (13%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           DS  +T L      G ++ +  ++        L  +D + G TAL  A    R  I    
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLVENFD---KLEDKDIE-GSTALIWAVKNNRLGIAEKL 87

Query: 147 LFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
           L   S+G          +T L  + +F    +   L+  GA++  ++ +  TP  +A   
Sbjct: 88  L---SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY 144

Query: 197 NDTELAAYL 205
             +E+   L
Sbjct: 145 GRSEIVKKL 153

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 61.6 bits (151), Expect = 3e-12
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 22/130 (16%)

Query: 86  SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
            +D  G+              + ++         N +D+   +T L  A M    +    
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLR--------NYRDSY-NRTPLMVACMLGMENAIDK 53

Query: 146 FLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALL 195
            +                 TAL  A    R  I   L++ G+++  KD+   TP   +++
Sbjct: 54  LV---ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110

Query: 196 ANDTELAAYL 205
              +E++ +L
Sbjct: 111 FGYSEMSYFL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII 111
           D  G TA      +G ++V+K   
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFT 187

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 12/116 (10%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSI-LNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
           G+  L   +     DVV Y++        L   D+  G T LH   M             
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL-GNTVLHALVMIAD---------- 184

Query: 150 SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
           +S   +AL          +   L        + ++   TP  LA      E+  ++
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 28/147 (19%), Positives = 43/147 (29%), Gaps = 34/147 (23%)

Query: 88  DSVGQTALHY---GSRYGHKDVVKYIIACA-----PSSILNMQDNDK---GQTALHKAAM 136
            S G+T L       + G    +  ++        P  ++N Q  D+   G +ALH A  
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE 99

Query: 137 --------------------FKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGG 176
                                  R            G+  L  AA  K+  +   L+   
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159

Query: 177 ---ASLTVKDYDSNTPRALALLANDTE 200
              ASL   D   NT     ++  D  
Sbjct: 160 HQPASLEATDSLGNTVLHALVMIADNS 186

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 6/37 (16%), Positives = 14/37 (37%)

Query: 75  KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII 111
             L          +  G T L   ++ G  ++ ++I+
Sbjct: 205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 65.9 bits (162), Expect = 2e-14
 Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 87  IDSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
           + S+      +  + G  D VK  +A       +N      G+  LH AA   +  I   
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGED---VNRTLEG-GRKPLHYAADCGQLEILEF 58

Query: 146 FLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
            L    +G           T L  A      S   +L++ GA  TVK  D  T 
Sbjct: 59  LL---LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 109

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 19/130 (14%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           D  G TAL+Y    G+   VK  +        L        +T+ + A M    SI   F
Sbjct: 92  DDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYHAVMLNDVSIVSYF 148

Query: 147 LFFSSRG---------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRAL--ALL 195
           L   S            + +H         +  +L+    S    +     P  +  A+ 
Sbjct: 149 L---SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP-DIKLAID 204

Query: 196 ANDTELAAYL 205
             D E+   L
Sbjct: 205 NKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.9 bits (159), Expect = 6e-13
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 13/126 (10%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D  G +A +Y     +  +V  ++     ++ N+ +N   +  LH+AA  +   I  + L
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNA--GALKNLLEN---EFPLHQAATLEDTKIVKILL 82

Query: 148 F-------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDSNTPRALALLANDT 199
           F       F  +G TAL+ A          + V     L         T    A++ ND 
Sbjct: 83  FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV 142

Query: 200 ELAAYL 205
            + +Y 
Sbjct: 143 SIVSYF 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 60.2 bits (147), Expect = 3e-11
 Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 8/109 (7%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
            ++  + +H   + GH D++  ++    S   N  ++      +  A   K   +     
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTS--TNTNNSLLFIPDIKLAIDNKDIEMLQALF 215

Query: 148 FFSSRG---QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
                     +A  +  +     I  M++          Y  +      
Sbjct: 216 ---KYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKN 261

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 7/52 (13%), Positives = 11/52 (21%), Gaps = 3/52 (5%)

Query: 84  LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
           L   D    +A          ++ K II                   + K  
Sbjct: 214 LFKYDINIYSANLENVLLDDAEIAKMIIEKHVE--YKSDSYT-KDLDIVKNN 262

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 65.4 bits (161), Expect = 3e-14
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 18/126 (14%)

Query: 91  GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
           G+T LH  +R GH +VVK ++   A    +N +D + G+T LH AA      +  + L  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKN-GRTPLHLAARNGHLEVVKLLL-- 55

Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
              G          +T LH AA      +  +L+  GA +  KD +  TP  LA      
Sbjct: 56  -EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114

Query: 200 ELAAYL 205
           E+   L
Sbjct: 115 EVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 57.4 bits (140), Expect = 3e-11
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 22/103 (21%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
           D  G+T LH  +R GH +VVK ++          +N +D + G+T LH AA      +  
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLL-----EAGADVNAKDKN-GRTPLHLAARNGHLEVVK 85

Query: 145 MFLFFSSR----------GQTALHKAAMFKRRSICCMLVAGGA 177
           + L               G+T LH AA      +  +L+  GA
Sbjct: 86  LLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 68.7 bits (169), Expect = 3e-14
 Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 9/133 (6%)

Query: 79  SQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFK 138
           SQG+++  I +   + LH     GH   VK ++     + +N    D   T L  A +  
Sbjct: 80  SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTAD-WHTPLFNACVSG 136

Query: 139 RRSICWMFLFF------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRAL 192
                 + L         S   + +H+AA          L+A G ++  K     TP  L
Sbjct: 137 SWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 196

Query: 193 ALLANDTELAAYL 205
           A           L
Sbjct: 197 ACENQQRACVKKL 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 67.9 bits (167), Expect = 6e-14
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 17/109 (15%)

Query: 91  GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
             + +H  +R GH + V  +IA       ++ + +    T L+ A   ++R+     L  
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGN---IDHKISH-LGTPLYLACENQQRACVKKLL-- 210

Query: 150 SSRG---------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
              G          + LH         + C+L+  GA    K+ +   P
Sbjct: 211 -ESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP 258

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.9 bits (154), Expect = 3e-12
 Identities = 33/186 (17%), Positives = 58/186 (31%), Gaps = 27/186 (14%)

Query: 36  AARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLS----IDSV- 90
            +          L  +G     +   D                  G  LLS     D+V 
Sbjct: 2   GSSHHHHHHSSGLVPRGSH---MASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS 58

Query: 91  GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
             + +H  + +GH+  ++ +I+       +N+   D   + LH+A +    S   + L  
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWA---VNIITAD-HVSPLHEACLGGHLSCVKILL-- 112

Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
              G           T L  A +        +L+  GAS+  +  D  +P   A      
Sbjct: 113 -KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHV 170

Query: 200 ELAAYL 205
           E    L
Sbjct: 171 ECVNSL 176

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 12/99 (12%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
            S   T L+       +  VK ++     S  ++       + LH         +  + +
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLL----ESGADVNQGKGQDSPLHAVVRTASEELACLLM 242

Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL 179
            F       ++ G+  +      +       L   GASL
Sbjct: 243 DFGADTQAKNAEGKRPVELVP-PESPLAQLFLEREGASL 280

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 65.5 bits (161), Expect = 4e-14
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 18/126 (14%)

Query: 91  GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
               L   +R G  D V+ ++A  A    +N +D   G T L+ A       I  + L  
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGAD---VNAKDEY-GLTPLYLATAHGHLEIVEVLL-- 67

Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
              G           T LH AA      I  +L+  GA +  +D    T   +++   + 
Sbjct: 68  -KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126

Query: 200 ELAAYL 205
           +LA  L
Sbjct: 127 DLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAA 135
           D++G T LH  +  GH ++ + ++   A      +N QD   G+TA   + 
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKHGAD-----VNAQDKF-GKTAFDISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 14/98 (14%)

Query: 118 ILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRG----------QTALHKAAMFKRRS 167
             +   +D     L +AA   +     + +   + G           T L+ A       
Sbjct: 6   HHHHHGSD-LGKKLLEAARAGQDDEVRILM---ANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 168 ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
           I  +L+  GA +   D    TP  LA      E+A  L
Sbjct: 62  IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.1 bits (90), Expect = 3e-04
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII 111
           D  G+TA       G++D+ + + 
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQ 133

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.8 bits (169), Expect = 4e-14
 Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 22/137 (16%)

Query: 88  DSVGQTALHYGSRYGHKD---VVKYIIA------CAPSSILNMQDNDKGQTALHKAAMFK 138
           D  G TAL   +    +D     K ++          ++  + +    G+TALH AA   
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK-GRTALHYAAQVS 290

Query: 139 RRSICWMFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNT 188
              I    +    +G          +T +  AA   R  +   L+  GAS+   D   +T
Sbjct: 291 NMPIVKYLV--GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHT 348

Query: 189 PRALALLANDTELAAYL 205
            R LA   N   +    
Sbjct: 349 ARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.4 bits (168), Expect = 5e-14
 Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 20/146 (13%)

Query: 75  KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
              H+        +      LH     G   + + I        +N+ D    +T LH  
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHT-EAAGSYAITEPIT----RESVNIIDPRHNRTVLHWI 132

Query: 135 AMFKRRSICWMFLFFSSR---------------GQTALHKAAMFKRRSICCMLVAGGASL 179
           A           +   ++                 T L  A + +RR +   L+  GA  
Sbjct: 133 ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP 192

Query: 180 TVKDYDSNTPRALALLANDTELAAYL 205
           T+ +    +    A    D  +  Y+
Sbjct: 193 TIYNKSERSALHQAAANRDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 23/118 (19%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSIL------NMQDNDKGQTALHKAAMFKRRSICW 144
            +T LH+ +     +  + +I       +      N  D D   T L  A + +RR +  
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD-ENTPLMLAVLARRRRLVA 183

Query: 145 MFLFFSSRG----------QTALHKAAMFKRRSICCMLV---AGGASLTVKDYDSNTP 189
             +     G          ++ALH+AA  +   +   ++        +   D +  T 
Sbjct: 184 YLM---KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 24/136 (17%)

Query: 87  IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           +          G   G+  +  +        I    + +     LH  A     +I    
Sbjct: 57  LQHYSLYPNPQGYGNGNDFLGDFNHTNL--QIPTEPEPE-SPIKLHTEAA-GSYAITEPI 112

Query: 147 LFFSSRG---------QTALHKAAMFKRRSI--------CCMLVAGGASLTVKDYDSNTP 189
                           +T LH  A                   +A GA +   D D NTP
Sbjct: 113 T---RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 169

Query: 190 RALALLANDTELAAYL 205
             LA+LA    L AYL
Sbjct: 170 LMLAVLARRRRLVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 15/100 (15%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
              G+TALHY ++  +  +VKY++    S+  + QD D G+T +  AA   R  +  M+L
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDED-GKTPIMLAAQEGRIEVV-MYL 332

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGA 177
               +G           TA   A      +I  +      
Sbjct: 333 I--QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 28/154 (18%)

Query: 75  KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
           K+  + G  + ++D    T L        + +V Y++     +   + +    ++ALH+A
Sbjct: 150 KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA--GADPTIYNKS-ERSALHQA 206

Query: 135 AMFKRRSICWMFLFFSSR------------GQTALHKAAMFKRR---SICCMLVAGGA-- 177
           A  +   +  M    +S             G TAL   A  + R   +   +LV  GA  
Sbjct: 207 AANRDFGM--MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

Query: 178 ------SLTVKDYDSNTPRALALLANDTELAAYL 205
                     + Y   T    A   ++  +  YL
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 66.2 bits (163), Expect = 5e-14
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 16/128 (12%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D+ G T LH  +  GH ++V+ ++       +N  D+  G T L  AA+F    I  + L
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGAD--VNAVDHA-GMTPLRLAALFGHLEIVEVLL 100

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
                G           T LH AAMF    I  +L+  GA +  +D    T   +++   
Sbjct: 101 ---KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157

Query: 198 DTELAAYL 205
           + +LA  L
Sbjct: 158 NEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 64.7 bits (159), Expect = 2e-13
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 18/126 (14%)

Query: 91  GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
               L   +R G  D V+ ++A  A    +N +D   G T LH AA      I  + L  
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGAD---VNAEDAS-GWTPLHLAAFNGHLEIVEVLL-- 67

Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
              G           T L  AA+F    I  +L+  GA +   D + +TP  LA +    
Sbjct: 68  -KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126

Query: 200 ELAAYL 205
           E+   L
Sbjct: 127 EIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 41.6 bits (99), Expect = 4e-05
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 14/98 (14%)

Query: 118 ILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRG----------QTALHKAAMFKRRS 167
             +   +D     L +AA   R     + +   + G           T LH AA      
Sbjct: 6   HHHHHGSD-LGKKLLEAARAGRDDEVRILM---ANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 168 ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
           I  +L+  GA +   D+   TP  LA L    E+   L
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII 111
           D  G+TA       G++D+ + + 
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEILQ 166

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 63.9 bits (157), Expect = 8e-14
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 22/112 (19%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           G T LH  ++ GH + VK ++     S    +N +  D G T LH AA      I  + L
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLL-----SKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLL 62

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
              ++G           T  H A       I  +L A GA +  + + S+  
Sbjct: 63  ---AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.1 bits (116), Expect = 6e-08
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALH 132
              G T  H   + GH ++VK +    A    +N +         H
Sbjct: 72  SKDGNTPEHLAKKNGHHEIVKLLDAKGAD---VNARSWG-SSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 37.7 bits (89), Expect = 4e-04
 Identities = 28/93 (30%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 120 NMQDNDKGQTALHKAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCML 172
                D G T LH AA           L         S  G T LH AA      I  +L
Sbjct: 3   MWGSKD-GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61

Query: 173 VAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
           +A GA +  +  D NTP  LA      E+   L
Sbjct: 62  LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.0 bits (167), Expect = 9e-14
 Identities = 16/141 (11%), Positives = 40/141 (28%), Gaps = 24/141 (17%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
           D   +T L     + +++ +  ++   PS     L+  +   G + LH A +     +  
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ-GNSHLHWAILINWEDVAM 228

Query: 145 MFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSN---------- 187
            F+          +     L+ +       +   L+       ++    +          
Sbjct: 229 RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRV 288

Query: 188 ---TPRALALLANDTELAAYL 205
                   A   +  E+   L
Sbjct: 289 VWLDFVPAAADPSKQEVLQLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 65.7 bits (161), Expect = 5e-13
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-FF 149
           GQ  +H        D+V  ++  A          ++GQ           R +  +     
Sbjct: 84  GQKPIHLAVMANKTDLVVALVEGA---------KERGQMPESLLNECDEREVNEIGSHVK 134

Query: 150 SSRGQTALHKAAMFKRRS--ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
             +GQTALH           +  +LV  GAS T KD    TP   A+   + E    +
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 10/118 (8%), Positives = 24/118 (20%), Gaps = 16/118 (13%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D+     L+   R     + K ++      ++       G T L                
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR------------- 287

Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
                    +  AA   ++ +  +L      +                     +    
Sbjct: 288 ---VVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 20/123 (16%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D      +H  +R G  D V+ +I    S    +Q+   G TALH A  F          
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETGVS--PTIQNRF-GCTALHLACKFGCVDTAKYLA 73

Query: 148 FFSSRG--------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
              S G        Q  +H A M  +  +   LV G             P +L    ++ 
Sbjct: 74  ---SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDER 124

Query: 200 ELA 202
           E+ 
Sbjct: 125 EVN 127

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 16/190 (8%), Positives = 44/190 (23%), Gaps = 56/190 (29%)

Query: 15  SSKHYLDIINIL--------EKTSEGV---LKAARVGDIKMLKDLHSQGYSLKKIPPKDD 63
              ++ D+             + +E       + R   + + K+L  +            
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278

Query: 64  HPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD 123
           +                G ++L    V    +   +    ++V++ +        +    
Sbjct: 279 N----------------GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE--VVRSL 320

Query: 124 NDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
           N                            G     K       ++  M +A  A +  + 
Sbjct: 321 NT---------------------------GAGGAVKRKKKAAPAVKRMKLAPSAPVRTRS 353

Query: 184 YDSNTPRALA 193
                  A++
Sbjct: 354 RSRARSSAVS 363

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           + +    L   S  G  D+V+ II        ++ +++ G TALH A       I    +
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDD--PSLPNDE-GITALHNAVCAGHTEIVKFLV 90

Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSN---TPRALALLAN 197
            F        S G T LH AA      +C  LV  GA++    Y        +   +   
Sbjct: 91  QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150

Query: 198 DTELAAYL 205
            T+ + +L
Sbjct: 151 YTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 64.2 bits (157), Expect = 8e-13
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 17/128 (13%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           +  GQ +L  G R   +      I    +  + ++ N      L  +++     +    +
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERI----AHGMRVKFNPLPLALLLDSSLEGEFDLVQRII 57

Query: 148 FFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
                          G TALH A       I   LV  G ++   D D  TP   A   N
Sbjct: 58  ---YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114

Query: 198 DTELAAYL 205
           + ++  +L
Sbjct: 115 NVQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 17/118 (14%), Positives = 27/118 (22%), Gaps = 32/118 (27%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICW 144
           DS G T LH  +   +  V K+++   A      +        QTA              
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAA-----VFAMTYSDMQTA-------------- 140

Query: 145 MFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA 202
                         +            L      + + +             ND EL 
Sbjct: 141 ----------ADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELP 188

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 62.8 bits (154), Expect = 7e-13
 Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 17/125 (13%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
               L   +  G  + +  ++    +  +N Q+   G+TAL          I    L   
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVN--VNAQNGF-GRTALQVMK-LGNPEIARRLL--- 57

Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
            RG             +H AA          L+   A + ++D + N P  LA       
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117

Query: 201 LAAYL 205
           +  +L
Sbjct: 118 VVEFL 122

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 62.4 bits (153), Expect = 1e-12
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 14/127 (11%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           +  G+TAL    + G+ ++ + ++   A     +++D   G   +H AA           
Sbjct: 35  NGFGRTALQV-MKLGNPEIARRLLLRGAN---PDLKDRT-GFAVIHDAARAGFLDTLQTL 89

Query: 147 LFF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS-LTVKDYDSNTPRALALLAND 198
           L F        + G   LH AA      +   LV   AS +  +++  +T   LA L   
Sbjct: 90  LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

Query: 199 TELAAYL 205
            E+ + +
Sbjct: 150 NEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 57.8 bits (141), Expect = 5e-11
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 23/104 (22%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
           D  G   +H  +R G  D ++ ++          +N++DN+ G   LH AA      +  
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLL-----EFQADVNIEDNE-GNLPLHLAAKEGHLRVVE 120

Query: 145 MFLFFSSR-----------GQTALHKAAMFKRRSICCMLVAGGA 177
             +                G TA   A ++ R  +  ++ A GA
Sbjct: 121 FLV---KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 61.7 bits (151), Expect = 1e-12
 Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 20/130 (15%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
                  L   +  G  + V+ ++   A     N  +   G+  +    M     +  + 
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGAD---PNALNRF-GRRPIQVMMM-GSAQVAELL 63

Query: 147 LFFSSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALL 195
           L     G              +H AA         +L   GA L V D     P  LA  
Sbjct: 64  L---LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120

Query: 196 ANDTELAAYL 205
               ++A YL
Sbjct: 121 QGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 16/100 (16%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICW 144
           +  G+  +      G   V + ++   A       N  D       +H AA         
Sbjct: 42  NRFGRRPIQVMMM-GSAQVAELLLLHGAE-----PNCADPATLTRPVHDAAREGFLDTLV 95

Query: 145 MFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGA 177
           +            + G+  +  A     R I   L A   
Sbjct: 96  VLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 77  LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIA 112
           LH  G  L   D+ G+  +      GH+D+ +Y+ A
Sbjct: 97  LHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 10/122 (8%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF- 149
                      G  + V  ++       +N  + D G TALH+A +     +    +   
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGAD--INYANVD-GLTALHQACIDDNVDMVKFLVENG 96

Query: 150 ------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAA 203
                  + G   LH AA      I   L++ GA +   + + +TP  +A      EL  
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

Query: 204 YL 205
             
Sbjct: 157 NE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 34/187 (18%)

Query: 24  NILEKTSEGVL---KAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQ 80
           ++    SEG      A      ++L++  ++     +   K++   +     Q   L+S 
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW--LNSG 188

Query: 81  GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRR 140
             + +     G TALH  +  G+ +V+K +I       +N++D D               
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD--VNIKDYD--------------- 231

Query: 141 SICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
                       G T LH AA + +   C +LV     +   +    T   +A       
Sbjct: 232 ------------GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGY 279

Query: 201 LAAYLEK 207
           L    +K
Sbjct: 280 LEELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 22/128 (17%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           +  G TALH      + D+VK+++    +  +N  DN+ G   LH AA      I    +
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNE-GWIPLHAAASCGYLDIAEYLI 126

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
              S+G           T L  A       +    V           D    R       
Sbjct: 127 ---SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ------GVDIEAARKEEERIM 177

Query: 198 DTELAAYL 205
             +   +L
Sbjct: 178 LRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.1 bits (139), Expect = 3e-10
 Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 17/128 (13%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           D+  +         G +  ++  +          +           A            L
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPV----VKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
               RG           TALH+A +     +   LV  GA++   D +   P   A    
Sbjct: 61  ---ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117

Query: 198 DTELAAYL 205
             ++A YL
Sbjct: 118 YLDIAEYL 125

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 32/126 (25%), Positives = 44/126 (34%), Gaps = 15/126 (11%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
               L   +  G  +VV+  +        +  + + G TALH A      SI   FL  +
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMND--PSQPNEE-GITALHNAICGANYSIV-DFLITA 76

Query: 151 --------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDSNTPRALALLANDT-- 199
                   S G T LH AA      IC  LV  GA++      D  T         +   
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA 136

Query: 200 ELAAYL 205
           + A YL
Sbjct: 137 DCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICW 144
           +  G TALH      +  +V ++I   A      +N  D+  G T LH AA      IC 
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGAN-----VNSPDSH-GWTPLHCAASCNDTVIC- 103

Query: 145 MFLFF---------SSRGQTALHKAAMFKRRSICCM--LVAGGASLTVKDYDSNTPRALA 193
           M L            S G TA  K   ++     C   L     S+ + +  +       
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163

Query: 194 LLANDTEL 201
                 EL
Sbjct: 164 SAEFGDEL 171

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 18/114 (15%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICW 144
           DS G T LH  +      +   ++   A      +       G TA  K   ++      
Sbjct: 84  DSHGWTPLHCAASCNDTVICMALVQHGAA-----IFATTLSDGATAFEKCDPYREGYADC 138

Query: 145 MFLFFS---------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
                          S    AL   +  +             ++  +D    T 
Sbjct: 139 ATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETD 191

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 107 VKYIIACAPSSILNMQDNDK--GQTALHKAAMFKRRSICWMFL-------FFSSRGQTAL 157
           ++ ++  A S         +      L  AA+     +    +         +  G TAL
Sbjct: 1   MRSVLRKAGS--PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL 58

Query: 158 HKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
           H A      SI   L+  GA++   D    TP   A   NDT +   L
Sbjct: 59  HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 59.1 bits (144), Expect = 5e-12
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 35/123 (28%)

Query: 87  IDSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSIC 143
           + S     L   +R G  D V+ ++     +    +  +D +                  
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILM-----ANGADVAAKDKN------------------ 56

Query: 144 WMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAA 203
                    G T LH AA      +  +L+  GA +  +D    T   +++   + +LA 
Sbjct: 57  ---------GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107

Query: 204 YLE 206
            L+
Sbjct: 108 ILQ 110

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.2 bits (147), Expect = 6e-12
 Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 20/127 (15%)

Query: 91  GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
               L   +  G  + V+ ++   A     N  ++  G+  +    M     +  + L  
Sbjct: 12  SADWLATAAARGRVEEVRALLEAGAN---PNAPNSY-GRRPIQVMMM-GSARVAELLL-- 64

Query: 150 SSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND 198
              G              +H AA         +L   GA L V+D     P  LA     
Sbjct: 65  -LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123

Query: 199 TELAAYL 205
            ++A YL
Sbjct: 124 RDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 51.7 bits (125), Expect = 7e-09
 Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 15/122 (12%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           +S G+  +      G   V + ++    +   N  D       +H AA         +  
Sbjct: 42  NSYGRRPIQVMMM-GSARVAELLLL-HGAEP-NCADPATLTRPVHDAAREGFLDTLVVLH 98

Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
                     + G+  +  A     R +   L A            +    +      ++
Sbjct: 99  RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG-----GTRGSNHARIDAAEGPSD 153

Query: 201 LA 202
           + 
Sbjct: 154 IP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 77  LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
           LH  G  L   D+ G+  +      GH+DV +Y+ A A           +G       A
Sbjct: 97  LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG--------GTRGSNHARIDA 147

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.7 bits (146), Expect = 7e-12
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 12/125 (9%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           +  G+TAL     +G   +   ++    S   N+QD   G + +H AA         + +
Sbjct: 33  NRFGKTALQVMM-FGSTAIALELLKQGAS--PNVQDTS-GTSPVHDAARTGFLDTLKVLV 88

Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
                       G   +H A      ++   L A  + L  +D    TP  LAL     +
Sbjct: 89  EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQD 147

Query: 201 LAAYL 205
           L   L
Sbjct: 148 LVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.0 bits (144), Expect = 2e-11
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 16/127 (12%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
               L   +  G    V+ ++        +  +   G+TAL    MF   +I    L   
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRF-GKTALQ-VMMFGSTAIALELL--- 55

Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
            +G           + +H AA         +LV  GA + V D     P  LA+    T 
Sbjct: 56  KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115

Query: 201 LAAYLEK 207
           + ++L  
Sbjct: 116 VVSFLAA 122

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII 111
           D+ G T L    + G +D+V  + 
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQ 153

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.5 bits (148), Expect = 1e-11
 Identities = 17/126 (13%), Positives = 31/126 (24%), Gaps = 17/126 (13%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
               L   ++   K V + +        ++  D + G T L+ A       I    +   
Sbjct: 6   VGALLEAANQRDTKKVKEILQDTTYQ--VDEVDTE-GNTPLNIAVHNNDIEIAKALI--- 59

Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGAS-LTVKDYDSNTPRALALLANDT 199
            RG           +    A    R  I   ++      L   +         A      
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 200 ELAAYL 205
           +    L
Sbjct: 120 DNVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 18/125 (14%)

Query: 77  LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHK 133
           L    Y +  +D+ G T L+        ++ K +I          +N+Q++    +    
Sbjct: 25  LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI-----DRGADINLQNSI-SDSPYLY 78

Query: 134 AAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSICCMLV-AGGASLTVKDY 184
           A    R  I    L          +  G  AL  AA         +L+  G   +  ++ 
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138

Query: 185 DSNTP 189
              T 
Sbjct: 139 FGYTA 143

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 23/118 (19%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           +  G  AL   +  GH D VK ++      I + Q++  G TAL +A   +         
Sbjct: 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDF-GYTALIEAVGLRE-------- 152

Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
              ++     ++        I  +L+  GA  ++KD    T    A     TE++  L
Sbjct: 153 --GNQL----YQD-------IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 12/94 (12%)

Query: 121 MQDNDKGQTALHKAAMFKRRSICWMFLFFS---------SRGQTALHKAAMFKRRSICCM 171
           M+  +     L  A     + +  +              + G T L+ A       I   
Sbjct: 1   MKTYE-VGALLEAANQRDTKKVKEILQ--DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 172 LVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
           L+  GA + +++  S++P   A     TE+ AY+
Sbjct: 58  LIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 38.2 bits (90), Expect = 7e-04
 Identities = 7/24 (29%), Positives = 16/24 (66%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII 111
           D+ G+TA+ Y ++ G+ ++ K + 
Sbjct: 175 DNSGRTAMDYANQKGYTEISKILA 198

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 34/173 (19%), Positives = 54/173 (31%), Gaps = 41/173 (23%)

Query: 74  LKDLHSQGYSLLSID----SVGQTALHY---GSRYGHKDVVKYIIACAPSS-----ILNM 121
           L  L +    L   +    S G+T L         G  D +  ++  A  +      +N 
Sbjct: 25  LSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS 84

Query: 122 QDNDK---GQTALHKAAMFKRRSICWMFL---------------------FFSSRGQTAL 157
              D    GQTALH A   + +    + +                      +   G+  L
Sbjct: 85  PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144

Query: 158 HKAAMFKRRSICCMLVAGG---ASLTVKDYDSNTP--RALALLANDTELAAYL 205
             AA   +  I   L   G   A L  +D   NT     +A+  N  E   ++
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV 197

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 52.9 bits (127), Expect = 9e-09
 Identities = 25/157 (15%), Positives = 41/157 (26%), Gaps = 37/157 (23%)

Query: 86  SIDSVGQTALHYGSRYGHKDVVKYII-----------ACAPSSILNMQDNDKGQTALHKA 134
            +   GQTALH       K  V+ ++                          G+  L  A
Sbjct: 88  DVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA 147

Query: 135 AMFKRRSICWMFLFFS----------SRGQTALHKAAMFK---------RRSICCMLVAG 175
           A   +  I                  SRG T LH                  +  +L+  
Sbjct: 148 ACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK 207

Query: 176 GASL-------TVKDYDSNTPRALALLANDTELAAYL 205
            A L        + + D  +P  +A       +  ++
Sbjct: 208 CAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 16/112 (14%), Positives = 28/112 (25%), Gaps = 25/112 (22%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSI-LNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
           G+  L   +      +V Y+         L  QD+  G T LH        +        
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR-GNTVLHALVAIADNTRENTKFVT 198

Query: 150 S-----------------------SRGQTALHKAAMFKRRSICCMLVAGGAS 178
                                   + G + L  AA   +  I   ++    +
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 36/149 (24%)

Query: 93  TALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKR--RSICWMFLFF 149
             +  GS  G + ++ +++      +    ++   G+T L KA +     R+     L  
Sbjct: 11  DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70

Query: 150 SS-------------------RGQTALHKAAMFKRRSICCMLVAGGASLTVKD------- 183
            +                   RGQTALH A   + +    +LV  GA +  +        
Sbjct: 71  IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 184 -------YDSNTPRALALLANDTELAAYL 205
                  Y    P +LA   N   +  YL
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYL 159

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 26/178 (14%), Positives = 47/178 (26%), Gaps = 32/178 (17%)

Query: 36  AARVGDIKMLKDLHSQGYSLKKIPPKDD-------HPNLNHFFFQLKDLHSQGYSLLSID 88
           AA +G  +   +L  +GY  K+   K +       + N    +     L ++G  + S  
Sbjct: 13  AAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT 72

Query: 89  SVGQTALHYGSRYGHKDVVKYIIACAPSSIL-------NMQDNDKGQTALHKAAMFKRRS 141
             G T      + G  D+      C    I                +  + K        
Sbjct: 73  KEGTTLFFPLFQGGGNDITGTTELC---KIFLEKGADITALYKP-YKIVVFKNIFNYFVD 128

Query: 142 ICWMFLFFS--------------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
              M   +                 G TAL      ++     M+        +K+  
Sbjct: 129 ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 11/112 (9%), Positives = 24/112 (21%), Gaps = 13/112 (11%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL--- 147
               +   +  G  +    +         ++  ++     L       R  I    +   
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 148 ----FFSSRGQTALHKAAMFKRRSI------CCMLVAGGASLTVKDYDSNTP 189
                 +  G T            I      C + +  GA +T         
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV 117

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 56.2 bits (137), Expect = 4e-11
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 22/100 (22%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           G+T LH  +R GH +VVK ++          +N +D + G+T LH AA      +  + L
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL-----EAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLL 55

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGA 177
                G          +T LH AA      +  +L+  GA
Sbjct: 56  ---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 51.6 bits (125), Expect = 3e-09
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 9/52 (17%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAM 136
           D  G+T LH  +R GH +VVK ++          +N +D + G+T LH AA 
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLL-----EAGADVNAKDKN-GRTPLHLAAR 77

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 39.6 bits (94), Expect = 6e-05
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYII 111
           D  G+T LH  +R GH +VVK ++
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLL 88

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 12/132 (9%)

Query: 75  KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHK 133
                +          G+  L   +      +VK+++      + ++ +D+  G T LH 
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV-GNTVLHA 190

Query: 134 AAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
                  ++            T    +   +   +   L        + +    TP ALA
Sbjct: 191 LVEVADNTV----------DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

Query: 194 LLANDTELAAYL 205
             +    + AY+
Sbjct: 241 ASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 18/123 (14%)

Query: 86  SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
                GQTALH      +  +V  ++     + +    N            FK+      
Sbjct: 96  DSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQAAANG---------DFFKKTKGRPG 144

Query: 146 FLFFSSRGQTALHKAAMFKRRSICCMLVAGG---ASLTVKDYDSNTPRALALLANDTELA 202
           F F    G+  L  AA   + +I   L+      A ++ +D   NT     +   D  + 
Sbjct: 145 FYF----GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200

Query: 203 AYL 205
              
Sbjct: 201 NTK 203

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 10/61 (16%)

Query: 75  KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
             LH         +  G T L   +  G   V+ YI+          ++        H A
Sbjct: 217 AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ---------REIH-EPECRHAA 266

Query: 135 A 135
           A
Sbjct: 267 A 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 26/130 (20%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSI-----LNMQDNDKGQTALHKAAMF----- 137
               + ++       +   ++ ++     S         +D + G+T L KA +      
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 138 ----------------KRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTV 181
                            ++ +   +     +GQTALH A   +  ++  +LV  GA +  
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 182 KDYDSNTPRA 191
                   + 
Sbjct: 130 AANGDFFKKT 139

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 15/88 (17%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSIL--------------NMQDNDKGQTALHK 133
           DSVG T LH         V       +  + +               + +   G T L  
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK-GLTPLAL 239

Query: 134 AAMFKRRSICWMFLFFSSRGQTALHKAA 161
           AA   +  +    L          H AA
Sbjct: 240 AASSGKIGVLAYILQREIHEPECRHAAA 267

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 56.2 bits (135), Expect = 8e-10
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 26/142 (18%)

Query: 87  IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           +D  G T LH+ +   + ++VK+++    S+     DN  G++ L KA           F
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVK-HGSNR-LYGDNM-GESCLVKAVKSVNNYDSGTF 183

Query: 147 -----LFFSS------RGQTALHKAAMFKRRS------------ICCMLVAGGASLTVKD 183
                  +          +T LH   +    +            +   +V          
Sbjct: 184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 243

Query: 184 YDSNTPRALALLANDTELAAYL 205
            +    +         +     
Sbjct: 244 TNEKESKPNDKNGERKDSILEN 265

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.2 bits (122), Expect = 4e-08
 Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 20/127 (15%)

Query: 87  IDSVGQTALHY----GSRYGHKDVVKYIIACAPSSILNMQDND-----KGQTALHKAAMF 137
            DS+ +T LH+        G     KY +      I+  Q+         + +       
Sbjct: 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256

Query: 138 KRRSICWMFLFFS-----------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
           +R+      L              S G T L+ AA     SI   L+  GA   + +   
Sbjct: 257 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316

Query: 187 NTPRALA 193
             P    
Sbjct: 317 LRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 15/126 (11%)

Query: 18  HYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDL 77
           H++ I +       G   AA+     ++  +  +     +    +     N    + KD 
Sbjct: 206 HHIIITS----GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261

Query: 78  HSQGYSLLSI--------DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQT 129
             +   L  I        DS G T L+  +R G+  +V  ++         + +   G  
Sbjct: 262 ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD--PFIANKS-GLR 318

Query: 130 ALHKAA 135
            +   A
Sbjct: 319 PVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 16/130 (12%)

Query: 73  QLKDLHSQGYSLLSIDSVGQTALHYGS-RYGHKDVVKYIIACAPSSI-LNMQDNDKGQTA 130
               L++   +  S          + S     ++V         + + LN+  ++ G T 
Sbjct: 78  MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP---NTQLNLNIPVDEHGNTP 134

Query: 131 LHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMF----KRRSICCMLVAGGASL 179
           LH         +    +          + G++ L KA          +   +L      L
Sbjct: 135 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL 194

Query: 180 TVKDYDSNTP 189
            ++D  + T 
Sbjct: 195 ILEDSMNRTI 204

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 17/157 (10%), Positives = 48/157 (30%), Gaps = 28/157 (17%)

Query: 75  KDLHSQGYSLLSIDSVGQTALHYGSRYGH---KDVVKYIIACAPSSILNMQDNDKGQTAL 131
           K L   G + L  D++G++ L    +  +       + ++      +  ++D+   +T L
Sbjct: 148 KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL-ILEDSM-NRTIL 205

Query: 132 HKAAMFKRRSICWMFLFF-------------------SSRGQTALHKAAMFKRRSICCML 172
           H   +    + C     +                    +  + +       +R+      
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 265

Query: 173 VAGGASLTV----KDYDSNTPRALALLANDTELAAYL 205
           +     +      +D + +T   +A    +  +   L
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 10/97 (10%)

Query: 74  LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAP--SSILNMQDNDKGQTAL 131
           +  +  +    +   +  + +         KD +   +      +++LN QD++ G T L
Sbjct: 229 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN-GDTCL 287

Query: 132 HKAAMFKRRSICWMFLFF-------SSRGQTALHKAA 161
           + AA     SI    L +       +  G   +   A
Sbjct: 288 NIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.4 bits (128), Expect = 8e-09
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 74  LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
           L  L +    +  I +    A    +  GH  V+  +   AP+ I+ M   +    A   
Sbjct: 111 LCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-NYHAFRL 169

Query: 134 AA 135
           AA
Sbjct: 170 AA 171

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 77  LHSQGYSLLSID--SVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
           L     + +     +    A    +  GH  V+  +   AP+    M   +    A   A
Sbjct: 147 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE-NYYAFRWA 205

Query: 135 AM 136
           A+
Sbjct: 206 AV 207

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 5/53 (9%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDN-----DKGQTALHKAA 135
                  L    R G++     +++      L   +N       G+  L   A
Sbjct: 316 PGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVA 368

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 20/130 (15%), Positives = 30/130 (23%), Gaps = 17/130 (13%)

Query: 84  LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC 143
           LL    +   A  +   YG K V  +I                         + K   + 
Sbjct: 218 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL- 276

Query: 144 WMFLFFSSRGQTALHKAAMFK--------RRSICCMLVAGGASLTVKDYDSNTPRALALL 195
                   +G   L               R  +    +   A       D+N    LAL 
Sbjct: 277 --------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 328

Query: 196 ANDTELAAYL 205
             +    A L
Sbjct: 329 LGNQGACALL 338

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 11/105 (10%)

Query: 115 PSSILNMQDN-DKGQTALHKAAMFKRRSICWMFLFFS----------SRGQTALHKAAMF 163
            +  + + +  +  +TALH A     R+   +  F             +G TALH   + 
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215

Query: 164 KRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
                  +L+ G AS+ + +    TP  +A           L ++
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 112 ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF----------FSSRGQTALHKAA 161
                 +         +  LH A     ++   +  F           ++ G TALH AA
Sbjct: 175 QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAA 234

Query: 162 MFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
           ++ +     +L+ G A +   +    T   +A   +  E    LE++
Sbjct: 235 LYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 281

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 113 CAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS-------SRGQTALHKAAMFKR 165
              + +  +       T L +A        C   L          S G+  LH A +   
Sbjct: 221 AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH 280

Query: 166 RSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
             + C+ +  GA L  +D +   P  +A+   + ++   L  +
Sbjct: 281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 116 SSILNMQDNDKGQTALHKAAMFKRRSICWM--FLF--------FSSRGQTALHKAAMFKR 165
             +         +  LH A     ++   +  F+          ++ G TALH AA++ +
Sbjct: 160 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 219

Query: 166 RSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
                +L+ G A +   +    T   +A   +  E    LE+
Sbjct: 220 PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.9
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.69

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1e-35  Score=220.72  Aligned_cols=179  Identities=19%  Similarity=0.117  Sum_probs=168.2

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCC-CCCcCCCCCccHHHHHHh
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGY-SLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~-~~~~~d~~g~t~l~~a~~  100 (208)
                      +..|.||||.|+..|+.+++++|+++|++++..+..+.++++    .+..+++++|+++|. +++..+..|.||||+|+.
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            567889999999999999999999999999999999999975    456899999999998 899999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV  173 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll  173 (208)
                      .|+.+++++|++.|++  ++.. +..|+||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|+
T Consensus       134 ~~~~~~v~~Ll~~g~~--~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  210 (253)
T 1yyh_A          134 LAVEGMLEDLINSHAD--VNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL  210 (253)
T ss_dssp             HTCSSHHHHHHHTTCC--TTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cChHHHHHHHHHcCCC--CCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            9999999999999998  7777 47899999999999999999999965       567999999999999999999999


Q ss_pred             hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         174 AGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       174 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      ++|++++.+|..|.||+++|+.+|+.+++++|.+
T Consensus       211 ~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          211 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred             HcCCCccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999974

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.5e-35  Score=213.64  Aligned_cols=180  Identities=19%  Similarity=0.118  Sum_probs=168.4

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCC-CCCcCCCCCccHHHHHHh
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGY-SLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~-~~~~~d~~g~t~l~~a~~  100 (208)
                      +..+.||||.|+..|+.+++++|+++|++++..+..+.+|++    .+..+++++|++++. +++..+..|.||||+|+.
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  101 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  101 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHH
Confidence            567899999999999999999999999999999999999975    566899999999987 889999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV  173 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll  173 (208)
                      .|+.+++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|+
T Consensus       102 ~~~~~~~~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  178 (223)
T 2f8y_A          102 LAVEGMLEDLINSHAD--VNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL  178 (223)
T ss_dssp             HTCHHHHHHHHHTTCC--TTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             hCcHHHHHHHHHcCCC--CcCc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999998  7777 47899999999999999999999955       567899999999999999999999


Q ss_pred             hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         174 AGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       174 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ++|++++..|..|.||+++|+.+++.+++++|++.
T Consensus       179 ~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~  213 (223)
T 2f8y_A          179 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY  213 (223)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCCCccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence            99999999999999999999999999999999863

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.3e-36  Score=223.89  Aligned_cols=183  Identities=23%  Similarity=0.223  Sum_probs=164.8

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCC---CcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYS---LKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~---~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~   97 (208)
                      .+..|.||||.|+..|+.+++++|+++|++   ++..+..|.+|++    .+..+++++|+++|++++.+|..|.||||+
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~   84 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            356789999999999999999999999998   7888889999975    566899999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCc---------------------------------------------cccCCCCCCccHHH
Q psy4236          98 GSRYGHKDVVKYIIACAPSSI---------------------------------------------LNMQDNDKGQTALH  132 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g~~~~---------------------------------------------~~~~~~~~~~t~l~  132 (208)
                      |+..|+.+++++|++.|++..                                             ++.. +..|.||||
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~  163 (282)
T 1oy3_D           85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLH  163 (282)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC-CTTSCCHHH
T ss_pred             HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc-CCCCcCHHH
Confidence            999999999999999876411                                             3334 467999999


Q ss_pred             HHHhhCcHHHHHHHHhcC--------CCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q psy4236         133 KAAMFKRRSICWMFLFFS--------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAY  204 (208)
Q Consensus       133 ~a~~~~~~~~~~~l~~~~--------~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  204 (208)
                      +|+..|+.+++++|++.+        ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++
T Consensus       164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~  243 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL  243 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHH
Confidence            999999999999999652        349999999999999999999999999999999999999999999999999999


Q ss_pred             HhhC
Q psy4236         205 LEKS  208 (208)
Q Consensus       205 L~~~  208 (208)
                      |+++
T Consensus       244 Ll~~  247 (282)
T 1oy3_D          244 LRAH  247 (282)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            9863

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=221.49  Aligned_cols=183  Identities=19%  Similarity=0.199  Sum_probs=142.9

Q ss_pred             HHhhhhchHHHHHHHHhCCHHHHHHHHHcCCC--------CcccCCCCCCCcc-----chHHHHHHHHHHcCCCCCcCCC
Q psy4236          23 INILEKTSEGVLKAARVGDIKMLKDLHSQGYS--------LKKIPPKDDHPNL-----NHFFFQLKDLHSQGYSLLSIDS   89 (208)
Q Consensus        23 ~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~--------~~~~~~~~~~~~~-----~~~~~~~~~l~~~g~~~~~~d~   89 (208)
                      .+.+.++.++|+.||+.|+.++|++|+++|++        ++..+..+.++++     .....+++.|++.|+++|.+|.
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~   84 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ   84 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence            34566677899999999999999999999876        3445555666654     2234578999999999999999


Q ss_pred             CCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHh
Q psy4236          90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAM  162 (208)
Q Consensus        90 ~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~  162 (208)
                      .|+||||+|+..|+.+++++|++.|++  ++.. +..|.||+++|+..++.+++++|++.       +..|.||||+|+.
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~--~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGAN--AGAR-NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACS  161 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCC--cCcc-CCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            999999999999999999999999998  7766 47899999999999999999999854       5678999999999


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         163 FKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       163 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      .|+.+++++|++.|++++..+..|.||||+|+.+|+.+++++|+++
T Consensus       162 ~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  207 (269)
T 4b93_B          162 GGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH  207 (269)
T ss_dssp             TTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999863

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1e-34  Score=212.97  Aligned_cols=179  Identities=22%  Similarity=0.296  Sum_probs=142.1

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      +..|.||||.|+..|+.+++++|+++|++++..+..+.++++    .+..+++++|+++|++++.++..|.||||+|+..
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   87 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK   87 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence            455778888888888888888888888888888888877754    4567788888888888888888888888888888


Q ss_pred             CCHHHHHHHHHcC-CCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236         102 GHKDVVKYIIACA-PSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV  173 (208)
Q Consensus       102 g~~~~~~~ll~~g-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll  173 (208)
                      |+.+++++|++.| .+  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|+
T Consensus        88 ~~~~~~~~Ll~~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  164 (237)
T 3b7b_A           88 GHYEVVQYLLSNGQMD--VNCQ-DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL  164 (237)
T ss_dssp             TCHHHHHHHHTTTCCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCC--cccC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            8888888888877 44  5555 36678888888888888888888754       455778888888888888888888


Q ss_pred             hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         174 AGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       174 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +.|++++..|..|.||+|+|+.+|+.+++++|++
T Consensus       165 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  198 (237)
T 3b7b_A          165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS  198 (237)
T ss_dssp             TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH
Confidence            8888888888888888888888888888888775

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.3e-34  Score=212.86  Aligned_cols=183  Identities=20%  Similarity=0.189  Sum_probs=152.4

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHH----cCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHH
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHS----QGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTAL   95 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~----~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l   95 (208)
                      ..+..|.||||.|+..|+.+++++|++    .|.+++..+..+.+|++    .+..+++++|+++|++++..|..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   83 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   83 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            456778889999999999999988887    78888888888888864    5568889999999999988888899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCC--ccccCCCCCCccHHHHHHhhCcHHHHHHHHhcC--------CCCCcHHHHHHhhCC
Q psy4236          96 HYGSRYGHKDVVKYIIACAPSS--ILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS--------SRGQTALHKAAMFKR  165 (208)
Q Consensus        96 ~~a~~~g~~~~~~~ll~~g~~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~--------~~~~t~l~~A~~~~~  165 (208)
                      |+|+..|+.+++++|++.++..  .++.. +..|.||||+|+..++.+++++|++.+        ..|.||||+|+..|+
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEAR-NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccccc-CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            9999999999999999887621  15555 467889999999999999999888552        568899999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         166 RSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       166 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .+++++|++.|++++..|..|.||||+|+.+|+.+++++|++
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  204 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR  204 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999888889999999999999999988875

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.5e-35  Score=214.74  Aligned_cols=179  Identities=20%  Similarity=0.252  Sum_probs=166.9

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      +..+.||||.|+..|+.+++++|+++|++++..+..+.+|++    .+..+++++|+++|++++.+|..|.||||+|+..
T Consensus        37 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  116 (231)
T 3aji_A           37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK  116 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            456889999999999999999999999999999999999975    4568999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHh
Q psy4236         102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVA  174 (208)
Q Consensus       102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~  174 (208)
                      |+.+++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|++
T Consensus       117 ~~~~~~~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  193 (231)
T 3aji_A          117 NRHEIAVMLLEGGAN--PDAK-DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT  193 (231)
T ss_dssp             TCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC--CCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            999999999999988  7776 47899999999999999999999955       5679999999999999999999999


Q ss_pred             CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         175 GGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       175 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +|++++.+|..|.||+++|..+++.+++++|.+
T Consensus       194 ~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          194 QGASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            999999999999999999999999999999875

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.7e-34  Score=201.49  Aligned_cols=146  Identities=32%  Similarity=0.479  Sum_probs=118.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHH
Q psy4236          31 EGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYI  110 (208)
Q Consensus        31 ~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~l  110 (208)
                      ++|+.||+.|+.++|+.|+++|+++|                             .+|..|+||||+|+..++.+++++|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn-----------------------------~~d~~g~t~l~~a~~~~~~~~~~~l   56 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVN-----------------------------ASDSDGRTPLHHAAENGHKEVVKLL   56 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC-----------------------------CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            57999999999999999777666554                             5667777778877777777777777


Q ss_pred             HHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccC
Q psy4236         111 IACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD  183 (208)
Q Consensus       111 l~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  183 (208)
                      ++.|++  ++.+ +..|+||||+|+..|+.+++++|++.       +..|+||||+|+..|+.+++++|++.|++++.+|
T Consensus        57 l~~gad--~~~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d  133 (169)
T 4gpm_A           57 ISKGAD--VNAK-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD  133 (169)
T ss_dssp             HHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             Hhcccc--hhhh-ccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence            777777  6666 36677788887777777777777744       4567888888888888888889999999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         184 YDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       184 ~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ..|+|||++|+.+|+.+++++|+++
T Consensus       134 ~~G~TpL~~A~~~g~~~iv~~Ll~~  158 (169)
T 4gpm_A          134 SDGRTPLDLAREHGNEEVVKLLEKQ  158 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            8999999999999999999988764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=7.1e-35  Score=213.29  Aligned_cols=178  Identities=20%  Similarity=0.168  Sum_probs=162.7

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCC-----CcCCCCCccHHHH
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQ-GYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSL-----LSIDSVGQTALHY   97 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~-g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~-----~~~d~~g~t~l~~   97 (208)
                      .|.||||.|++.|+.+++++|+++ |++++..+..|.+|++    .+..+++++|++.|+++     +..|..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            478999999999999999999998 9999999999999975    56789999999999987     6677899999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCC------------CCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHH
Q psy4236          98 GSRYGHKDVVKYIIACAPSSILNMQDN------------DKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALH  158 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g~~~~~~~~~~------------~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~  158 (208)
                      |+..|+.+++++|++.|++  ++..+.            ..|.||||+|+..|+.+++++|++.       +..|.||||
T Consensus        82 A~~~~~~~~v~~Ll~~g~~--~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~  159 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGAS--VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH  159 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCC--TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHcCCHHHHHHHHhCCCC--CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            9999999999999999988  655531            2699999999999999999999964       577999999


Q ss_pred             HHHhhCCHHHH----HHHHhCCCCC------cccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         159 KAAMFKRRSIC----CMLVAGGASL------TVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       159 ~A~~~~~~~~~----~~Ll~~g~~~------~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +|+..|+.+++    ++|++.|+++      +..|..|.||+|+|+.+|+.+++++|++
T Consensus       160 ~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~  218 (232)
T 2rfa_A          160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ  218 (232)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999988    9999999998      5889999999999999999999999986

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-35  Score=222.44  Aligned_cols=181  Identities=22%  Similarity=0.201  Sum_probs=166.8

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      ....+.++|+.||..|+.+++++|+++|++++..+..|.+|++    .+..+++++|+++|++++..|..|.||||+|+.
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            3456778999999999999999999999999999999999975    567899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh--------------------------------
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF--------------------------------  148 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~--------------------------------  148 (208)
                      .|+.+++++|++.|++  ++.. +..|.||||+|+..+..+++++++.                                
T Consensus       116 ~g~~~~v~~Ll~~g~~--~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          116 CGYLDIAEYLISQGAH--VGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cCCHHHHHHHHhCCCC--CCCc-CCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            9999999999999998  7777 4789999999999999999887763                                


Q ss_pred             --cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         149 --FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       149 --~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                        .+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|+++
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  254 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN  254 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHc
Confidence              235799999999999999999999999999999999999999999999999999999863

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.4e-35  Score=218.78  Aligned_cols=185  Identities=21%  Similarity=0.167  Sum_probs=136.5

Q ss_pred             hHHHhhhhchHHHHHHHHhC-------------CHHHHHHHHHcCCCCccc-CCCCCCCcc----chHHHHHHHHHHcCC
Q psy4236          21 DIINILEKTSEGVLKAARVG-------------DIKMLKDLHSQGYSLKKI-PPKDDHPNL----NHFFFQLKDLHSQGY   82 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g-------------~~~~~~~Li~~g~~~~~~-~~~~~~~~~----~~~~~~~~~l~~~g~   82 (208)
                      |+...+..|.||||.|+..|             +.+++++|+++|++++.. +..|.++++    .+..+++++|+++|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            45566788999999999987             999999999999999764 788888875    567899999999999


Q ss_pred             CCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCC-CCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCC
Q psy4236          83 SLLSIDSVGQTALHYGSRYGHKDVVKYIIACAP-SSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQ  154 (208)
Q Consensus        83 ~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~  154 (208)
                      +++.+|..|.||||+|+..|+.+++++|++.++ +  ++.. +..|.||||+|+..++.+++++|++.       +..|.
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  158 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDAR-MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK  158 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC--TTCC-CTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--cccc-CCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence            999999999999999999999999999999987 5  6666 47899999999999999999999954       56799


Q ss_pred             cHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         155 TALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       155 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ||||+|+..|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|++.
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  212 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH  212 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999863

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.9e-35  Score=227.64  Aligned_cols=187  Identities=21%  Similarity=0.204  Sum_probs=161.1

Q ss_pred             cchhHHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCc-------
Q psy4236          18 HYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLS-------   86 (208)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~-------   86 (208)
                      ..++....+..|.||||.|+..|+.+++++|+++|++++..+..+.+|++    .+..+++++|+++|++++.       
T Consensus         9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L   88 (364)
T 3ljn_A            9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPI   88 (364)
T ss_dssp             -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHH
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHH
Confidence            34556667888999999999999999999999999999999999998875    4567888888888776654       


Q ss_pred             ---------------------------------------------CCCCCccHHHHHHhcC--CHHHHHHHHHcCCCCcc
Q psy4236          87 ---------------------------------------------IDSVGQTALHYGSRYG--HKDVVKYIIACAPSSIL  119 (208)
Q Consensus        87 ---------------------------------------------~d~~g~t~l~~a~~~g--~~~~~~~ll~~g~~~~~  119 (208)
                                                                   .|..|.||||+|+..|  +.+++++|++.|++  +
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~--~  166 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS--P  166 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC--T
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC--C
Confidence                                                         6667899999999999  99999999999988  7


Q ss_pred             ccCCCCCCccHHHHHHhhCcHHHHHHHHhc------------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCC
Q psy4236         120 NMQDNDKGQTALHKAAMFKRRSICWMFLFF------------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSN  187 (208)
Q Consensus       120 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~------------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  187 (208)
                      +.. +..|.||||+|+..|+.+++++|++.            +..|.||||+|+..|+.+++++|+++|++++..|..|.
T Consensus       167 ~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~  245 (364)
T 3ljn_A          167 TAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT  245 (364)
T ss_dssp             TCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred             ccc-CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            777 47899999999999999999999853            35689999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCCHHHHHHHhh
Q psy4236         188 TPRALALLANDTELAAYLEK  207 (208)
Q Consensus       188 t~l~~a~~~~~~~~~~~L~~  207 (208)
                      |||++|+.+|+.+++++|++
T Consensus       246 tpL~~A~~~g~~~~v~~Ll~  265 (364)
T 3ljn_A          246 VPLYLSVRAAMVLLTKELLQ  265 (364)
T ss_dssp             CHHHHHHHTCCHHHHHHHHH
T ss_pred             CHHHHHHHhChHHHHHHHHH
Confidence            99999999999999999985

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1e-35  Score=224.46  Aligned_cols=182  Identities=19%  Similarity=0.118  Sum_probs=166.5

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~   97 (208)
                      +...+..|.||||.|+..|+.+++++|+++|++++..+  |.+|++    .+..+++++|+++|++++.+|..|.||||+
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  101 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY  101 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence            34456778999999999999999999999999999884  677764    567899999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCCCCC-ccHHHHHHhhCcHHHHHHHHhcC-----C-CCCcHHHHHHhhCCHHHHH
Q psy4236          98 GSRYGHKDVVKYIIACAPSSILNMQDNDKG-QTALHKAAMFKRRSICWMFLFFS-----S-RGQTALHKAAMFKRRSICC  170 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~l~~~~-----~-~~~t~l~~A~~~~~~~~~~  170 (208)
                      |+..|+.+++++|++.|++  ++..+ ..| .||||+|+..|+.+++++|++.+     . .|.||||+|+..|+.++++
T Consensus       102 A~~~g~~~~v~~Ll~~ga~--~~~~~-~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~  178 (285)
T 3kea_A          102 AVDSGNMQTVKLFVKKNWR--LMFYG-KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI  178 (285)
T ss_dssp             HHHTTCHHHHHHHHHHCGG--GGGCS-SSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCC--CCccC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence            9999999999999999998  77774 667 79999999999999999999763     2 6789999999999999999


Q ss_pred             HHHhCCCCCcccCCCCCCH-HHHHHHcCCHHHHHHHhhC
Q psy4236         171 MLVAGGASLTVKDYDSNTP-RALALLANDTELAAYLEKS  208 (208)
Q Consensus       171 ~Ll~~g~~~~~~~~~g~t~-l~~a~~~~~~~~~~~L~~~  208 (208)
                      +|+++|++++..+..|+|| ||+|+.+|+.+++++|+++
T Consensus       179 ~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~  217 (285)
T 3kea_A          179 LLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY  217 (285)
T ss_dssp             HHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred             HHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999998 9999999999999999863

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4e-34  Score=204.90  Aligned_cols=179  Identities=23%  Similarity=0.275  Sum_probs=164.0

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCC-CCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGY-SLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~-~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      ..+.+||+.|+..|+.+.++.|++.+. +++..+..+.+|++    .+..+++++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            457789999999999999999999876 99999999999975    5668999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHc-CCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCC-----HH
Q psy4236         102 GHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKR-----RS  167 (208)
Q Consensus       102 g~~~~~~~ll~~-g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~-----~~  167 (208)
                      |+.+++++|++. +++  ++.. +..|.||||+|+..++.+++++|++.        +..|.||||+|+..++     .+
T Consensus        83 ~~~~~~~~Ll~~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~  159 (201)
T 3hra_A           83 GRTEILAYMLKHATPD--LNKH-NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD  159 (201)
T ss_dssp             TCHHHHHHHHHHSCCC--TTCC-CTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred             CCHHHHHHHHhccCcc--cccc-cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence            999999999954 545  6666 47899999999999999999999955        4568999999999998     99


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         168 ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       168 ~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ++++|++.|++++..|..|.||+++|+.+|+.+++++|++.
T Consensus       160 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            99999999999999999999999999999999999999863

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=216.54  Aligned_cols=180  Identities=19%  Similarity=0.167  Sum_probs=165.6

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHH
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGS   99 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~   99 (208)
                      ..+..|.||||.|+..|+.+++++|+++|++++..+..|.+|++    .+..+++++|+++|++++.+|..|.||||+|+
T Consensus        54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC  133 (285)
T ss_dssp             SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH
T ss_pred             CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            34667889999999999999999999999999999999999975    56789999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHH
Q psy4236         100 RYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCML  172 (208)
Q Consensus       100 ~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~L  172 (208)
                      ..|+.+++++|++.|++  ++..  ..|.||||+|+..|+.+++++|++.       +..|.||||+|+..|+.+++++|
T Consensus       134 ~~~~~~~v~~Ll~~g~~--~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  209 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGAS--VQPE--SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL  209 (285)
T ss_dssp             HHTCHHHHHHHHHTTCC--SSCS--CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred             HcCHHHHHHHHHHCCCC--CCCC--CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            99999999999999988  5544  4599999999999999999999964       56789999999999999999999


Q ss_pred             HhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         173 VAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       173 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ++.|++++. +..|.||||+|+.+|+.+++++|++.
T Consensus       210 l~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~  244 (285)
T 3d9h_A          210 LESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF  244 (285)
T ss_dssp             HHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            999999995 88999999999999999999999863

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.5e-33  Score=217.46  Aligned_cols=182  Identities=19%  Similarity=0.139  Sum_probs=164.1

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      .+..|.||||.|+..|+.+++++|+++|++++..+..+.+|++    .+..+++++|+++|++++..|..|.||||+|+.
T Consensus        54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~  133 (351)
T 3utm_A           54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS  133 (351)
T ss_dssp             SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            3456789999999999999999999999999999999999975    567899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccccC-----------------------------------------------------CCCCC
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQ-----------------------------------------------------DNDKG  127 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~-----------------------------------------------------~~~~~  127 (208)
                      .|+.+++++|++.|++  ++..                                                     ....|
T Consensus       134 ~~~~~~v~~Ll~~g~~--~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  211 (351)
T 3utm_A          134 KNRVEVCSLLLSHGAD--PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH  211 (351)
T ss_dssp             TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTC
T ss_pred             cCCHHHHHHHHHcCCC--CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCC
Confidence            9999999999999987  3322                                                     12457


Q ss_pred             ccHHHHHHhh---CcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q psy4236         128 QTALHKAAMF---KRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN  197 (208)
Q Consensus       128 ~t~l~~a~~~---~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  197 (208)
                      .||||+|+..   +..+++++|++.       +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.+|
T Consensus       212 ~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~  291 (351)
T 3utm_A          212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG  291 (351)
T ss_dssp             CCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            8999999998   668899999854       567999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHhhC
Q psy4236         198 DTELAAYLEKS  208 (208)
Q Consensus       198 ~~~~~~~L~~~  208 (208)
                      +.+++++|+++
T Consensus       292 ~~~~v~~Ll~~  302 (351)
T 3utm_A          292 HLQTCRLLLSY  302 (351)
T ss_dssp             CHHHHHHHHHT
T ss_pred             cHHHHHHHHHc
Confidence            99999999863

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-33  Score=224.54  Aligned_cols=184  Identities=22%  Similarity=0.205  Sum_probs=149.2

Q ss_pred             hHHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHH
Q psy4236          21 DIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALH   96 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~   96 (208)
                      ++...+..|.||||.|+..|+.+++++|+++|++++..+..+.+|++    .+..+++++|+++|++++.++..|.||||
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   85 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH   85 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            34455677888999999999999999999999999888888888864    56688899999999999888888999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHH
Q psy4236          97 YGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSIC  169 (208)
Q Consensus        97 ~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~  169 (208)
                      +|+..|+.+++++|++.|++  ++.. +..|.||||+|+..|+.+++++|++.       +..|.||||+|+..|+.+++
T Consensus        86 ~A~~~g~~~~v~~Ll~~ga~--~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  162 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENNAN--PNLA-TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA  162 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHhCCCC--CCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999998888  6666 46788899998888888888888854       45677888888888888888


Q ss_pred             HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         170 CMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       170 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      ++|+++|++++..+..|.|||++|+.+|+.+++++|++
T Consensus       163 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  200 (437)
T 1n11_A          163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP  200 (437)
T ss_dssp             HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGG
T ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            88888888888888888888888888888888888865

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.5e-34  Score=212.45  Aligned_cols=180  Identities=18%  Similarity=0.141  Sum_probs=164.4

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCC----CCCcCCCCCccHHHH
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGY----SLLSIDSVGQTALHY   97 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~----~~~~~d~~g~t~l~~   97 (208)
                      +..|.||||.|+..|+.+++++|+++|++++..+..+.++++    .+..+++++|++.+.    +++..+..|.||||+
T Consensus        43 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~  122 (241)
T 1k1a_A           43 NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV  122 (241)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH
T ss_pred             cccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHH
Confidence            345789999999999999999999999999999999999875    567899999999998    889999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHH
Q psy4236          98 GSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICC  170 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~  170 (208)
                      |+..|+.+++++|++.|++  ++..+...|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.++++
T Consensus       123 A~~~~~~~~~~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  200 (241)
T 1k1a_A          123 AVNTECQETVQLLLERGAD--IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR  200 (241)
T ss_dssp             HHHHTCHHHHHHHHHTTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC--cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999998  7766446799999999999999999999965       567999999999999999999


Q ss_pred             HHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         171 MLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       171 ~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +|++.|++++.+|..|.||+++|+.+|+.++++.|.+
T Consensus       201 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          201 TLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             HHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred             HHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence            9999999999999999999999999999999998864

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.1e-34  Score=223.29  Aligned_cols=183  Identities=19%  Similarity=0.185  Sum_probs=167.2

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcC---CCCCcCCCCCccHHH
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQG---YSLLSIDSVGQTALH   96 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g---~~~~~~d~~g~t~l~   96 (208)
                      ..+..|.||||.|+..|+.+++++|+++|++++..+..+.++++    .+..+++++|+++|   .+++..|..|.||||
T Consensus       161 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~  240 (373)
T 2fo1_E          161 AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM  240 (373)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred             CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence            34567889999999999999999999999999999999999975    56789999999998   899999999999999


Q ss_pred             HHHhcC---CHHHHHHHHHcCCCCccccC-------CCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHH
Q psy4236          97 YGSRYG---HKDVVKYIIACAPSSILNMQ-------DNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALH  158 (208)
Q Consensus        97 ~a~~~g---~~~~~~~ll~~g~~~~~~~~-------~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~  158 (208)
                      +|+..+   +.+++++|++.|++  ++..       .+..|.||||+|+..|+.+++++|++.        +..|.||||
T Consensus       241 ~A~~~~~~~~~~~v~~Ll~~g~~--~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~  318 (373)
T 2fo1_E          241 IVAHNEGRDQVASAKLLVEKGAK--VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  318 (373)
T ss_dssp             HHHHSCSTTHHHHHHHHHHHTCC--SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             HHHHhCCcchHHHHHHHHHCCCC--cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHH
Confidence            999998   89999999999988  5431       135799999999999999999999954        467999999


Q ss_pred             HHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         159 KAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       159 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      +|+..|+.+++++|+++|++++..|..|.||+++|+.+|+.+++++|+++
T Consensus       319 ~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          319 LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999864

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.8e-33  Score=203.90  Aligned_cols=177  Identities=24%  Similarity=0.223  Sum_probs=163.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCC-CCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGY-SLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH  103 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~-~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~  103 (208)
                      +.++|+.|+..|+.+.+++|++.+. .++..+..+.++++    .+..+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            5679999999999999999999865 46777888888865    566899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCC
Q psy4236         104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGG  176 (208)
Q Consensus       104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g  176 (208)
                      .+++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|++.|
T Consensus        86 ~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  162 (231)
T 3aji_A           86 DEIVKALLVKGAH--VNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK  162 (231)
T ss_dssp             HHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999998  7777 47899999999999999999999964       466899999999999999999999999


Q ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         177 ASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       177 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ++++..|..|.||+|+|+.+|+.+++++|+++
T Consensus       163 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  194 (231)
T 3aji_A          163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ  194 (231)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            99999999999999999999999999999863

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.7e-33  Score=204.20  Aligned_cols=164  Identities=19%  Similarity=0.146  Sum_probs=79.0

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcC--CCCcc-cCCCCCCCcc----chHHHHHHHHHHcC--CCCCcCCCCCccHHHHH
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQG--YSLKK-IPPKDDHPNL----NHFFFQLKDLHSQG--YSLLSIDSVGQTALHYG   98 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g--~~~~~-~~~~~~~~~~----~~~~~~~~~l~~~g--~~~~~~d~~g~t~l~~a   98 (208)
                      .|.||||.|+..|+.+++++|+++|  ++++. .+..+.++++    .+..+++++|+++|  .+++..+..|.||||+|
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A  114 (228)
T 2dzn_A           35 DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA  114 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHH
Confidence            3444555555555555555555554  33333 3344444432    22344555555554  44444445555555555


Q ss_pred             HhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCCHHHHH
Q psy4236          99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSICC  170 (208)
Q Consensus        99 ~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~~~~~~  170 (208)
                      +..|+.+++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.        +..|.||||+|+..|+.++++
T Consensus       115 ~~~~~~~~~~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~  191 (228)
T 2dzn_A          115 VGKKWFEVSQFLIENGAS--VRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV  191 (228)
T ss_dssp             HHTTCHHHHHHHHHTTCC--SCCC-CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHcCCHhHHHHHHHcCCC--cccc-CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            555555555555555544  4443 23455555555555555555555432        233445555555555555555


Q ss_pred             HHH-hCCCCCcccCCCCCCHHHHHH
Q psy4236         171 MLV-AGGASLTVKDYDSNTPRALAL  194 (208)
Q Consensus       171 ~Ll-~~g~~~~~~~~~g~t~l~~a~  194 (208)
                      +|+ +.|++++..|..|.||+++|+
T Consensus       192 ~Ll~~~ga~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          192 LLVEKYGAEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             HHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred             HHHHhcCCCCCccCCCCCcHHHHHH
Confidence            555 445555555555555555543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.8e-33  Score=206.35  Aligned_cols=178  Identities=21%  Similarity=0.264  Sum_probs=163.6

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcC-CCCCcCCCCCccHHHHHHh
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQG-YSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g-~~~~~~d~~g~t~l~~a~~  100 (208)
                      +..+.||||.|+..|+.+++++|+++|++++..+..+.++++    .+..+++++|++.| .+++..+..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  120 (237)
T 3b7b_A           41 SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE  120 (237)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Confidence            455788999999999999999999999999999999998864    56789999999999 8999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV  173 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll  173 (208)
                      .|+.+++++|++.|++  ++.. +..|.||||+|+..|+.+++++|++.       +..|.||||+|+..|+.+++++|+
T Consensus       121 ~~~~~~~~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  197 (237)
T 3b7b_A          121 YKHVDLVKLLLSKGSD--INIR-DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL  197 (237)
T ss_dssp             TTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC--CCcc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHH
Confidence            9999999999999998  7777 47899999999999999999999965       566899999999999999999999


Q ss_pred             hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236         174 AGGASLTVKDYDSNTPRALALLANDTELAAYLE  206 (208)
Q Consensus       174 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~  206 (208)
                      ++|++++.+|..|.||+++|+.+++...+..|.
T Consensus       198 ~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          198 SRDSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             TTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999886655554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.4e-34  Score=214.75  Aligned_cols=176  Identities=19%  Similarity=0.140  Sum_probs=158.6

Q ss_pred             chHHHHHHHHhCCHH----HHHHHHHcCCCCcc----cCCCCCCCcc----c---hHHHHHHHHHHcCCCCCcC------
Q psy4236          29 TSEGVLKAARVGDIK----MLKDLHSQGYSLKK----IPPKDDHPNL----N---HFFFQLKDLHSQGYSLLSI------   87 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~----~~~~Li~~g~~~~~----~~~~~~~~~~----~---~~~~~~~~l~~~g~~~~~~------   87 (208)
                      |.||||.|+..|+.+    ++++|+++|++++.    .+..|.+|++    .   +..+++++|++.|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            679999999999997    66777789999998    8999999975    3   6778999999999887643      


Q ss_pred             -----CCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCC-------------CccHHHHHHhhCcHHHHHHHHh-
Q psy4236          88 -----DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDK-------------GQTALHKAAMFKRRSICWMFLF-  148 (208)
Q Consensus        88 -----d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~l~~-  148 (208)
                           |..|.||||+|+..|+.+++++|++.|++  ++..+ ..             |.||||+|+..|+.+++++|++ 
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~-~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD--VHLRA-CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCC-CSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC--CCccc-ccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                 36799999999999999999999999998  77764 33             9999999999999999999998 


Q ss_pred             --c-------CCCCCcHHHHHHh--hCCHH-------HHHHHHhCCCCC-------cccCCCCCCHHHHHHHcCCHHHHH
Q psy4236         149 --F-------SSRGQTALHKAAM--FKRRS-------ICCMLVAGGASL-------TVKDYDSNTPRALALLANDTELAA  203 (208)
Q Consensus       149 --~-------~~~~~t~l~~A~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~~~~~  203 (208)
                        .       +..|.||||+|+.  .++.+       ++++|++.|+++       +.+|..|.||||+|+.+|+.++++
T Consensus       159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence              4       5679999999999  78888       999999999999       899999999999999999999999


Q ss_pred             HHhh
Q psy4236         204 YLEK  207 (208)
Q Consensus       204 ~L~~  207 (208)
                      +|++
T Consensus       239 ~Ll~  242 (256)
T 2etb_A          239 HILQ  242 (256)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9986

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-32  Score=206.70  Aligned_cols=177  Identities=22%  Similarity=0.215  Sum_probs=101.1

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH  103 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~  103 (208)
                      .+.||||.|+..|+.+++++|+++|++++..+..+.+|++    .+..+++++|+++|++++..|..|.||||+|+..|+
T Consensus        38 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  117 (285)
T 1wdy_A           38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK  117 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCC
Confidence            3556777777777777777777777777776666666653    344666777777777766666666677777766666


Q ss_pred             HHHHHHHHHcCCCCccccCC---------CCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCC-
Q psy4236         104 KDVVKYIIACAPSSILNMQD---------NDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKR-  165 (208)
Q Consensus       104 ~~~~~~ll~~g~~~~~~~~~---------~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~-  165 (208)
                      .+++++|++.|++  ++...         +..|.||||+|+..++.+++++|++.        +..|.||||+|+..++ 
T Consensus       118 ~~~~~~Ll~~g~~--~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  195 (285)
T 1wdy_A          118 VKALKFLYKRGAN--VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  195 (285)
T ss_dssp             HHHHHHHHHTTCC--TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred             HHHHHHHHHhCCC--cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence            6666666666665  33221         13456666666666666666666532        2334444444444444 


Q ss_pred             ---HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236         166 ---RSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLE  206 (208)
Q Consensus       166 ---~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~  206 (208)
                         .+++++|++.|++++.++..|.||||+|+.+|+.+++++|+
T Consensus       196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  239 (285)
T 1wdy_A          196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence               44444444444444444444444444444444444444443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.8e-35  Score=214.87  Aligned_cols=184  Identities=20%  Similarity=0.179  Sum_probs=162.1

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCC----CCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHH
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGY----SLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTAL   95 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~----~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l   95 (208)
                      ..+..|.||||.|+..|+.+++++|++.+.    +++..+..+.+|++    .+..+++++|+++|++++.+|..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            356788999999999999999999998865    78999999999975    5668999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCc----cccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CC-CCCcHHHHHHhh
Q psy4236          96 HYGSRYGHKDVVKYIIACAPSSI----LNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SS-RGQTALHKAAMF  163 (208)
Q Consensus        96 ~~a~~~g~~~~~~~ll~~g~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~-~~~t~l~~A~~~  163 (208)
                      |+|+..|+.+++++|++.++++.    ++.. +..|.||||+|+..++.+++++|++.       +. .|.||||+|+..
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  161 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKAT-NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  161 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC-CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence            99999999999999999987521    2334 46799999999999999999999955       33 799999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         164 KRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       164 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      |+.+++++|+++|++++..|..|.||+++|+.+|+.+++++|+++
T Consensus       162 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  206 (236)
T 1ikn_D          162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  206 (236)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHc
Confidence            999999999999999999999999999999999999999999863

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.3e-32  Score=211.92  Aligned_cols=181  Identities=21%  Similarity=0.175  Sum_probs=147.2

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCC-CCCCcc----chHHHHHHHHHHcCCCC----------------
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPK-DDHPNL----NHFFFQLKDLHSQGYSL----------------   84 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~-~~~~~~----~~~~~~~~~l~~~g~~~----------------   84 (208)
                      ..++.|+|+.||+.|+.++|++|+++|+++|..+.. |.+|++    .++.+++++|+++|+++                
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  101 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI  101 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence            345678888888888888888888888888887754 677764    55678888888877754                


Q ss_pred             -----------------CcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCC---------CCCCccHHHHHHhhC
Q psy4236          85 -----------------LSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD---------NDKGQTALHKAAMFK  138 (208)
Q Consensus        85 -----------------~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~---------~~~~~t~l~~a~~~~  138 (208)
                                       +..|..|.||+|+|+..|+.++++++++.|++  ++...         +..|.||||+|+..|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~--~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN--VNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC--TTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC--cchhhccccccccccCCCCcHHHHHHHCC
Confidence                             44566788999999999999999999998887  33221         235789999999999


Q ss_pred             cHHHHHHHHhc---------------------------------------------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236         139 RRSICWMFLFF---------------------------------------------SSRGQTALHKAAMFKRRSICCMLV  173 (208)
Q Consensus       139 ~~~~~~~l~~~---------------------------------------------~~~~~t~l~~A~~~~~~~~~~~Ll  173 (208)
                      +.+++++|+++                                             +..|.||||+|+..|+.++++.|+
T Consensus       180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll  259 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  259 (337)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence            99998888721                                             245789999999999999999999


Q ss_pred             h-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         174 A-GGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       174 ~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      . .|++++.+|..|+||||+|+.+|+.+++++|+++
T Consensus       260 ~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          260 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             TSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             HhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            8 5899999999999999999999999999999863

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3e-32  Score=204.43  Aligned_cols=178  Identities=19%  Similarity=0.151  Sum_probs=164.5

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCCCCccc-CCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKI-PPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~-~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      .+|.++|+.|++.|+.+++++|+++|++++.. +..+.++++    .+..+++++|+++|++++.+|..|.||||+|+..
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            46789999999999999999999999999988 666777764    5678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-----------------CCCCCcHHHHHHhhC
Q psy4236         102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-----------------SSRGQTALHKAAMFK  164 (208)
Q Consensus       102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-----------------~~~~~t~l~~A~~~~  164 (208)
                      |+.+++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.                 +..|.||||.|+..|
T Consensus        83 ~~~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T 1wdy_A           83 GSVKLLKLFLSKGAD--VNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             TCHHHHHHHHHTTCC--TTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCC--CCcc-CcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence            999999999999998  7777 47899999999999999999999965                 456889999999999


Q ss_pred             CHHHHHHHHhC-CCCCcccCCCCCCHHHHHHHcCC----HHHHHHHhh
Q psy4236         165 RRSICCMLVAG-GASLTVKDYDSNTPRALALLAND----TELAAYLEK  207 (208)
Q Consensus       165 ~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~----~~~~~~L~~  207 (208)
                      +.+++++|++. |++++..+..|.||+|+|+..++    .+++++|++
T Consensus       160 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~  207 (285)
T 1wdy_A          160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD  207 (285)
T ss_dssp             CHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHH
Confidence            99999999996 99999999999999999999999    899999875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.7e-33  Score=209.87  Aligned_cols=176  Identities=18%  Similarity=0.205  Sum_probs=161.0

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      +..|.||||.|+..|+.+++++|+++|++++..+..+.+|++    .+..+++++|++.|++++..+ .|.||||+|+..
T Consensus        89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~  167 (285)
T 3d9h_A           89 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARR  167 (285)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHc
Confidence            345789999999999999999999999999999999999975    466899999999999998654 599999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc------CCCCCcHHHHHHhhCCHHHHHHHHhC
Q psy4236         102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF------SSRGQTALHKAAMFKRRSICCMLVAG  175 (208)
Q Consensus       102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~------~~~~~t~l~~A~~~~~~~~~~~Ll~~  175 (208)
                      |+.+++++|++.|++  ++.. +..|+||||+|+..++.+++++|++.      +..|.||||+|+..|+.+++++|++.
T Consensus       168 g~~~~v~~Ll~~g~~--~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  244 (285)
T 3d9h_A          168 GHVECVNSLIAYGGN--IDHK-ISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDF  244 (285)
T ss_dssp             TCHHHHHHHHHTTCC--TTCC-BTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCC--CCCc-CCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            999999999999998  7777 47899999999999999999999955      46789999999999999999999999


Q ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         176 GASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       176 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      |++++.+|..|.||+++|+  ++.+++++|++
T Consensus       245 gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~  274 (285)
T 3d9h_A          245 GADTQAKNAEGKRPVELVP--PESPLAQLFLE  274 (285)
T ss_dssp             TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHhc--CccHHHHHHHH
Confidence            9999999999999999999  45688988875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-34  Score=214.36  Aligned_cols=171  Identities=19%  Similarity=0.192  Sum_probs=136.1

Q ss_pred             hhhhchHHHHHHHHhCCH-HHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHH
Q psy4236          25 ILEKTSEGVLKAARVGDI-KMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGS   99 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~-~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~   99 (208)
                      .+..+.+||+.|+..++. ++++.|+++|+++|..+..|.+|++    .+..+++++|++.|++++..+..|.||+++|+
T Consensus        48 ~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~  127 (269)
T 4b93_B           48 ADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC  127 (269)
T ss_dssp             ---------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccc
Confidence            345577899999988876 4889999999999999999999975    46688999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHH
Q psy4236         100 RYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCML  172 (208)
Q Consensus       100 ~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~L  172 (208)
                      ..++.+++++|++.|++  ++.+ +..|+||||+|+..|+.+++++|++.       +..|.||||+|+..|+.+++++|
T Consensus       128 ~~~~~~~~~~Ll~~g~~--~n~~-d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~L  204 (269)
T 4b93_B          128 QQGHFQVVKCLLDSNAK--PNKK-DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL  204 (269)
T ss_dssp             HHTCHHHHHHHHHTTCC--SCCC-CTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             ccChHHHHHHHHHCCCC--CCCC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHH
Confidence            99999999999999998  7777 47899999999999999999999965       56799999999999999999999


Q ss_pred             HhCCCCCcccCCCCCCHHHHHHHcCC
Q psy4236         173 VAGGASLTVKDYDSNTPRALALLAND  198 (208)
Q Consensus       173 l~~g~~~~~~~~~g~t~l~~a~~~~~  198 (208)
                      +++|+|++.+|..|+||||+|+.+++
T Consensus       205 l~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          205 LLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            99999999999999999999988774

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-32  Score=218.61  Aligned_cols=175  Identities=21%  Similarity=0.199  Sum_probs=89.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236          30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD  105 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~  105 (208)
                      .|||+.|+..|+.+++++|+++|++++..+..+.++++    .+..+++++|++.|.+++..+..|.||||+|+..|+.+
T Consensus       180 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  259 (437)
T 1n11_A          180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE  259 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            34444444444444444444444444444444444432    23344555555555555555555555555555555555


Q ss_pred             HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCC
Q psy4236         106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS  178 (208)
Q Consensus       106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~  178 (208)
                      ++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|+++|++
T Consensus       260 ~v~~Ll~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad  336 (437)
T 1n11_A          260 MVALLLSKQAN--GNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD  336 (437)
T ss_dssp             HHHHHHTTTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC
T ss_pred             HHHHHHhcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCC
Confidence            55555555544  3333 24455555555555555555555432       33455555555555555555555555555


Q ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         179 LTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       179 ~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      ++.+|..|.||||+|+.+|+.+++++|++
T Consensus       337 ~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~  365 (437)
T 1n11_A          337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLK  365 (437)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence            55555555555555555555555555543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6.4e-33  Score=208.13  Aligned_cols=172  Identities=19%  Similarity=0.129  Sum_probs=142.7

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCC------------------
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYS------------------   83 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~------------------   83 (208)
                      +..|.||||.|+..|+.+++++|+++|++++..+..+.+|++    .+..+++++|+++|.+                  
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  121 (282)
T 1oy3_D           42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP  121 (282)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCc
Confidence            355789999999999999999999999999999999999964    5678999999998765                  


Q ss_pred             -----------------------------CCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHH
Q psy4236          84 -----------------------------LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA  134 (208)
Q Consensus        84 -----------------------------~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a  134 (208)
                                                   ++.++..|.||||+|+..|+.+++++|++.|++  ++..+...|+||||+|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~tpL~~A  199 (282)
T 1oy3_D          122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD--LNKPEPTCGRTPLHLA  199 (282)
T ss_dssp             ----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHH
T ss_pred             chhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcCHHHHH
Confidence                                         677888999999999999999999999999998  7777444599999999


Q ss_pred             HhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCH
Q psy4236         135 AMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT  199 (208)
Q Consensus       135 ~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  199 (208)
                      +..++.+++++|++.       +..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|....+.
T Consensus       200 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------------
T ss_pred             HHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence            999999999999965       56799999999999999999999999999999999999999999876543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=201.99  Aligned_cols=179  Identities=21%  Similarity=0.284  Sum_probs=150.5

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCC-CCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPK-DDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~-~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      +..+.||||.|+..|+.+++++|+++|++++..... +.+++.    .+..+++++|++.|++++.++..|.||||+|+.
T Consensus        39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  118 (240)
T 3eu9_A           39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ  118 (240)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            345667888888888888888888888888766544 566653    455788888888888888888888889999888


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCc-HHHHHHHHhc-------C-CCCCcHHHHHHhhCCHHHHHH
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR-RSICWMFLFF-------S-SRGQTALHKAAMFKRRSICCM  171 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~l~~~-------~-~~~~t~l~~A~~~~~~~~~~~  171 (208)
                      .|+.+++++|++.|++  ++.. +..|.||||+|+..++ .+++++|++.       + ..|.||||+|+..|+.+++++
T Consensus       119 ~~~~~~~~~Ll~~~~~--~~~~-~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  195 (240)
T 3eu9_A          119 FGHTSIVAYLIAKGQD--VDMM-DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL  195 (240)
T ss_dssp             TTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred             cCHHHHHHHHHhcCCC--cccc-CCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHH
Confidence            8888888988888887  6666 4678889988886665 6777877744       2 368899999999999999999


Q ss_pred             HHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         172 LVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       172 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      |++.|++++..+..|.||+++|+.+|+.+++++|++
T Consensus       196 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~  231 (240)
T 3eu9_A          196 LLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE  231 (240)
T ss_dssp             HHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999999999999999999999986

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.7e-33  Score=202.51  Aligned_cols=177  Identities=21%  Similarity=0.139  Sum_probs=159.8

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcc-cCCCCCCCcc----chHHHHHHHHHHcC--CCCCc-CCCCCccHHHHHHh
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKK-IPPKDDHPNL----NHFFFQLKDLHSQG--YSLLS-IDSVGQTALHYGSR  100 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~-~~~~~~~~~~----~~~~~~~~~l~~~g--~~~~~-~d~~g~t~l~~a~~  100 (208)
                      |.||||.|+..|+.+++++|+++|.++.. .+..+.++++    .+..+++++|+++|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            56899999999999999999999988765 7888888865    56789999999999  55555 78899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV  173 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll  173 (208)
                      .|+.+++++|++.|+...++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccC-CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999843337777 47899999999999999999999965       567999999999999999999999


Q ss_pred             hCC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236         174 AGG-ASLTVKDYDSNTPRALALLANDTELAAYLE  206 (208)
Q Consensus       174 ~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~  206 (208)
                      +.| ++++..|..|.||||+|+.+|+.+++++|+
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999 999999999999999999999999999998

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=5.1e-33  Score=206.78  Aligned_cols=180  Identities=18%  Similarity=0.113  Sum_probs=155.9

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHH----cCCCCcccC----CCCCCCcc-------chHHHHHHHHHHcCCC--------
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHS----QGYSLKKIP----PKDDHPNL-------NHFFFQLKDLHSQGYS--------   83 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~----~g~~~~~~~----~~~~~~~~-------~~~~~~~~~l~~~g~~--------   83 (208)
                      ..+.++|+.|++.|+.+.++.|++    +|++++..+    ..|.++++       .+..+++++|++.|++        
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            347789999999999996555554    999999776    66888865       2668999999998744        


Q ss_pred             ---CCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCC-------------CCCccHHHHHHhhCcHHHHHHHH
Q psy4236          84 ---LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDN-------------DKGQTALHKAAMFKRRSICWMFL  147 (208)
Q Consensus        84 ---~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~-------------~~~~t~l~~a~~~~~~~~~~~l~  147 (208)
                         ++..|..|+||||+|+..|+.+++++|++.|++  ++..+.             ..|.||||+|+..|+.+++++|+
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD--VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC--cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence               455566899999999999999999999999998  766631             46999999999999999999999


Q ss_pred             h---c-------CCCCCcHHHHHHhhCC---------HHHHHHHHhCCCCC-------cccCCCCCCHHHHHHHcCCHHH
Q psy4236         148 F---F-------SSRGQTALHKAAMFKR---------RSICCMLVAGGASL-------TVKDYDSNTPRALALLANDTEL  201 (208)
Q Consensus       148 ~---~-------~~~~~t~l~~A~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~~~  201 (208)
                      +   .       +..|+||||+|+..++         .+++++|++.|+++       +..|..|.||||+|+.+|+.++
T Consensus       161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  240 (260)
T 3jxi_A          161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI  240 (260)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence            8   4       5679999999999888         79999999999999       6799999999999999999999


Q ss_pred             HHHHhhC
Q psy4236         202 AAYLEKS  208 (208)
Q Consensus       202 ~~~L~~~  208 (208)
                      +++|+++
T Consensus       241 v~~Ll~~  247 (260)
T 3jxi_A          241 FQHIIRR  247 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999863

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=3.5e-31  Score=184.90  Aligned_cols=150  Identities=28%  Similarity=0.378  Sum_probs=134.0

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDV  106 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~  106 (208)
                      ..+.++|+.|++.|+.+++++|+++|++                             ++.+|..|.||||+|+..|+.++
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-----------------------------~~~~~~~g~t~L~~A~~~~~~~~   62 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGAD-----------------------------VNAEDASGWTPLHLAAFNGHLEI   62 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCC-----------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCC-----------------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence            4456799999999999999997666554                             45677889999999999999999


Q ss_pred             HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCC
Q psy4236         107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL  179 (208)
Q Consensus       107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~  179 (208)
                      +++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|+++|+++
T Consensus        63 v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  139 (169)
T 2y1l_E           63 VEVLLKNGAD--VNAV-DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV  139 (169)
T ss_dssp             HHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCC--CCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999988  7777 47799999999999999999999864       567899999999999999999999999999


Q ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         180 TVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       180 ~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      +..|..|.||+++|+.+|+.+++++|++.
T Consensus       140 ~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          140 NAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            99999999999999999999999999863

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=5e-33  Score=208.31  Aligned_cols=182  Identities=21%  Similarity=0.163  Sum_probs=156.5

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHH----cCCCCc----ccCCCCCCCccc-------hHHHHHHHHHHcCCCC----
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHS----QGYSLK----KIPPKDDHPNLN-------HFFFQLKDLHSQGYSL----   84 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~----~g~~~~----~~~~~~~~~~~~-------~~~~~~~~l~~~g~~~----   84 (208)
                      ..+..+.|+||.|+..|+.++++.|++    .+++++    ..+..+.++++.       +..+++++|+++|+++    
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~   87 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK   87 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence            456778999999999999999998887    567776    346788888642       6689999999998653    


Q ss_pred             ---Cc----CCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCC-------------CCCccHHHHHHhhCcHHHHH
Q psy4236          85 ---LS----IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDN-------------DKGQTALHKAAMFKRRSICW  144 (208)
Q Consensus        85 ---~~----~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~-------------~~~~t~l~~a~~~~~~~~~~  144 (208)
                         +.    .|..|.||||+|+..|+.+++++|++.|++  ++..+.             ..|.||||+|+..|+.++++
T Consensus        88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (273)
T 2pnn_A           88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD--VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK  165 (273)
T ss_dssp             HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred             HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC--cCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence               22    567899999999999999999999999998  776642             16999999999999999999


Q ss_pred             HHHh---c-------CCCCCcHHHHHHhhCC---------HHHHHHHHhCCCCCc-------ccCCCCCCHHHHHHHcCC
Q psy4236         145 MFLF---F-------SSRGQTALHKAAMFKR---------RSICCMLVAGGASLT-------VKDYDSNTPRALALLAND  198 (208)
Q Consensus       145 ~l~~---~-------~~~~~t~l~~A~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~g~t~l~~a~~~~~  198 (208)
                      +|++   .       +..|+||||+|+..|+         .+++++|++.|++++       ..|..|.||||+|+.+|+
T Consensus       166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence            9998   4       5679999999999998         799999999999997       489999999999999999


Q ss_pred             HHHHHHHhh
Q psy4236         199 TELAAYLEK  207 (208)
Q Consensus       199 ~~~~~~L~~  207 (208)
                      .+++++|++
T Consensus       246 ~~iv~~Ll~  254 (273)
T 2pnn_A          246 IGVLAYILQ  254 (273)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999986

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.2e-33  Score=215.65  Aligned_cols=179  Identities=20%  Similarity=0.211  Sum_probs=162.9

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHH--------HcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccH
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLH--------SQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTA   94 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li--------~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~   94 (208)
                      ..|.||||+|+..|+.+++++|+        ++|+++|..+..|.+|++    .+..+++++|+++|++++..|..|.||
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  202 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  202 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence            56889999999999998888776        889999999999999975    566899999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcC---CCCccccCCCCCCccHHHHHHhhC---cHHHHHHHHhc---------------CCCC
Q psy4236          95 LHYGSRYGHKDVVKYIIACA---PSSILNMQDNDKGQTALHKAAMFK---RRSICWMFLFF---------------SSRG  153 (208)
Q Consensus        95 l~~a~~~g~~~~~~~ll~~g---~~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~~l~~~---------------~~~~  153 (208)
                      ||+|+..|+.+++++|++.+   .+  ++.. +..|.||||+|+..+   +.+++++|++.               +..|
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g  279 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGD--IEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  279 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHT--TSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccC--hhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccC
Confidence            99999999999999999987   55  6666 478999999999988   89999999954               2368


Q ss_pred             CcHHHHHHhhCCHHHHHHHHhC-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         154 QTALHKAAMFKRRSICCMLVAG-GASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       154 ~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      .||||+|+..|+.+++++|++. |++++..|..|.||||+|+.+|+.+++++|+++
T Consensus       280 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  335 (373)
T 2fo1_E          280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ  335 (373)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999999986 599999999999999999999999999999863

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.9e-31  Score=204.65  Aligned_cols=185  Identities=24%  Similarity=0.293  Sum_probs=167.4

Q ss_pred             hHHHhhhhchHHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHH
Q psy4236          21 DIINILEKTSEGVLKAARVGDIKMLKDLHSQ-GYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTAL   95 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~-g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l   95 (208)
                      +.......+.++|+.|++.|+.+.++.|+.. +++++..+..|.+|++    .+..+++++|+++|++++.+|..|.|||
T Consensus        16 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L   95 (351)
T 3utm_A           16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPL   95 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             eeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHH
Confidence            3344456678899999999999999999986 8999999999999975    5678999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcC-------------------------
Q psy4236          96 HYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS-------------------------  150 (208)
Q Consensus        96 ~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-------------------------  150 (208)
                      |+|+..|+.+++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.+                         
T Consensus        96 ~~A~~~g~~~iv~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~  172 (351)
T 3utm_A           96 HNACSYGHYEVTELLLKHGAC--VNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER  172 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHH
Confidence            999999999999999999998  7777 478999999999999999999998542                         


Q ss_pred             ------------------------------------CCCCcHHHHHHhh---CCHHHHHHHHhCCCCCcccCCCCCCHHH
Q psy4236         151 ------------------------------------SRGQTALHKAAMF---KRRSICCMLVAGGASLTVKDYDSNTPRA  191 (208)
Q Consensus       151 ------------------------------------~~~~t~l~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  191 (208)
                                                          ..|.||||+|+..   +..+++++|++.|++++..+..|.||||
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  252 (351)
T 3utm_A          173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH  252 (351)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             HHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHH
Confidence                                                3467999999998   5589999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHhhC
Q psy4236         192 LALLANDTELAAYLEKS  208 (208)
Q Consensus       192 ~a~~~~~~~~~~~L~~~  208 (208)
                      +|+.+|+.+++++|+++
T Consensus       253 ~A~~~g~~~~v~~Ll~~  269 (351)
T 3utm_A          253 VAAERAHNDVMEVLHKH  269 (351)
T ss_dssp             HHHHTTCHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHC
Confidence            99999999999999863

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.3e-31  Score=185.33  Aligned_cols=148  Identities=21%  Similarity=0.188  Sum_probs=134.3

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHH
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV  107 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~  107 (208)
                      .+.||||.|+..|+.+++++|++.|.                             +++.+|..|.||||+|+..|+.+++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~-----------------------------~~~~~~~~g~t~L~~A~~~~~~~~v   52 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQEN-----------------------------VINHTDEEGFTPLMWAAAHGQIAVV   52 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSS-----------------------------CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCC-----------------------------CcCCCCCCCCCHHHHHHHCCCHHHH
Confidence            46789999999999999999766554                             4556788999999999999999999


Q ss_pred             HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCc
Q psy4236         108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLT  180 (208)
Q Consensus       108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~  180 (208)
                      ++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|++.|++++
T Consensus        53 ~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  129 (167)
T 3v31_A           53 EFLLQNGAD--PQLL-GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT  129 (167)
T ss_dssp             HHHHHTTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHcCCC--CCCc-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999988  7776 47899999999999999999999854       5678999999999999999999999999999


Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         181 VKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       181 ~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      ..+..|.||+++|+.+|+.+++++|++
T Consensus       130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A          130 IETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999999999999975

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.2e-31  Score=190.88  Aligned_cols=151  Identities=19%  Similarity=0.235  Sum_probs=136.6

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK  104 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~  104 (208)
                      .+..|.||||.|+..|+.+++++|+++|++                             ++..|..|.||||+|+..|+.
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----------------------------~~~~~~~g~t~L~~A~~~~~~   81 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDK-----------------------------LEDKDIEGSTALIWAVKNNRL   81 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-----------------------------TTCCCTTSCCHHHHHHHTTCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhccc-----------------------------cccccccCccHHHHHHHcCCH
Confidence            456688999999999999999997666554                             456778899999999999999


Q ss_pred             HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCC
Q psy4236         105 DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGA  177 (208)
Q Consensus       105 ~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~  177 (208)
                      +++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|++.|+
T Consensus        82 ~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  158 (192)
T 2rfm_A           82 GIAEKLLSKGSN--VNTK-DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA  158 (192)
T ss_dssp             HHHHHHHHHTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCC--CCCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999999988  7777 47899999999999999999999854       5679999999999999999999999999


Q ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         178 SLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       178 ~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +++..|..|.||+++|+.+|+.+++++|++
T Consensus       159 ~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          159 DISARDLTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence            999999999999999999999999999985

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=9e-31  Score=179.88  Aligned_cols=144  Identities=24%  Similarity=0.309  Sum_probs=131.0

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHH
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVK  108 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~  108 (208)
                      ..++|+.|+..|+.+++++|+++|+++                             + .+..|.||||+|+..|+.++++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------------~-~~~~g~t~L~~A~~~~~~~~v~   51 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-----------------------------T-TDWLGTSPLHLAAQYGHFSTTE   51 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-----------------------------C-CCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-----------------------------C-cCCCCCCHHHHHHHcCCHHHHH
Confidence            357999999999999999988777654                             2 4677999999999999999999


Q ss_pred             HHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcc
Q psy4236         109 YIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTV  181 (208)
Q Consensus       109 ~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  181 (208)
                      +|++.|++  ++.. +..|+||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|++.|++++.
T Consensus        52 ~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  128 (153)
T 1awc_B           52 VLLRAGVS--RDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             HHHTTTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHcCCC--CCCC-CCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            99999988  7777 47799999999999999999999954       56789999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHH
Q psy4236         182 KDYDSNTPRALALLANDTELAAYL  205 (208)
Q Consensus       182 ~~~~g~t~l~~a~~~~~~~~~~~L  205 (208)
                      .|..|.||+++|+.+|+.+++++|
T Consensus       129 ~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          129 QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999999999987

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=8.6e-31  Score=181.44  Aligned_cols=148  Identities=21%  Similarity=0.273  Sum_probs=115.4

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHH
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV  107 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~  107 (208)
                      ...+||+.|+..|+.+++++|+++|++++                             .+|..|.||||+|+. |+.+++
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-----------------------------~~~~~g~t~L~~A~~-~~~~~v   53 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVN-----------------------------AQNGFGRTALQVMKL-GNPEIA   53 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-----------------------------CCCTTSCCHHHHCCS-SCHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-----------------------------ccCccCccHHHHHHc-CcHHHH
Confidence            45689999999999999999777666554                             456667777777777 777777


Q ss_pred             HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCC-C
Q psy4236         108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS-L  179 (208)
Q Consensus       108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~-~  179 (208)
                      ++|++.|++  ++.. +..|+||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|++.|++ +
T Consensus        54 ~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  130 (162)
T 1ihb_A           54 RRLLLRGAN--PDLK-DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV  130 (162)
T ss_dssp             HHHHHTTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT
T ss_pred             HHHHHcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCC
Confidence            777777766  5555 35677777777777777777777743       45677888888888888888888888887 5


Q ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         180 TVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       180 ~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      +..+..|.||+++|+.+|+.+++++|+++
T Consensus       131 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A          131 GHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            88888899999999999999999988764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.8e-30  Score=181.66  Aligned_cols=148  Identities=22%  Similarity=0.246  Sum_probs=132.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHH
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVK  108 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~  108 (208)
                      +.+|||.|+..|+.+.+++|++.|.+                            .++.+|..|.||||+|+..|+.++++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~----------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~   53 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDN----------------------------LVNKPDERGFTPLIWASAFGEIETVR   53 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSG----------------------------GGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcc----------------------------cccCCCCCCCCHHHHHHHcCCHHHHH
Confidence            35699999999999999998776543                            14567889999999999999999999


Q ss_pred             HHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcc
Q psy4236         109 YIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTV  181 (208)
Q Consensus       109 ~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  181 (208)
                      +|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|++.|++++.
T Consensus        54 ~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  130 (172)
T 3v30_A           54 FLLEWGAD--PHIL-AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT  130 (172)
T ss_dssp             HHHHHTCC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHcCCC--chhh-cccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            99999988  7777 47899999999999999999999955       56789999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         182 KDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       182 ~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .|..|.||+++|+.+|+.+++++|++
T Consensus       131 ~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A          131 EADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence            99999999999999999999999975

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=3.7e-31  Score=192.32  Aligned_cols=166  Identities=22%  Similarity=0.187  Sum_probs=150.0

Q ss_pred             CCHHHHHHHHHcCCCCccc-CCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcC
Q psy4236          40 GDIKMLKDLHSQGYSLKKI-PPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACA  114 (208)
Q Consensus        40 g~~~~~~~Li~~g~~~~~~-~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g  114 (208)
                      |+.+++++|+++|++++.. +..+.++++    .+..+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            6788899999999999876 678888864    56789999999999999999999999999999999999999999998


Q ss_pred             C-CCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCC
Q psy4236         115 P-SSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS  186 (208)
Q Consensus       115 ~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  186 (208)
                      + +  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|++.|++++..|..|
T Consensus        82 ~~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  158 (223)
T 2f8y_A           82 ATD--LDAR-MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE  158 (223)
T ss_dssp             TSC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCC--cccC-CCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            7 4  5555 47899999999999999999999964       5669999999999999999999999999999999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHhhC
Q psy4236         187 NTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       187 ~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      .||+|+|+.+|+.+++++|++.
T Consensus       159 ~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          159 ETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999999863

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=3.1e-31  Score=200.77  Aligned_cols=181  Identities=18%  Similarity=0.143  Sum_probs=154.9

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      .+..|.||||.|+..|+.+++++|+++|++++..+..|.+|++    .+..+++++|+++|++++..+..|.||||+|+.
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  148 (299)
T 1s70_B           69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE  148 (299)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCS
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHh
Confidence            3456789999999999999999999999999999999999975    566899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHc-CCCCc-----------------------cccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------
Q psy4236         101 YGHKDVVKYIIAC-APSSI-----------------------LNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------  149 (208)
Q Consensus       101 ~g~~~~~~~ll~~-g~~~~-----------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------  149 (208)
                      .++.+++++++.. +.+..                       .....+..|.||||+|+..|+.+++++|++.       
T Consensus       149 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~  228 (299)
T 1s70_B          149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK  228 (299)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC
T ss_pred             cchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCc
Confidence            9999999887753 32200                       1111135799999999999999999999964       


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Q psy4236         150 SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL  205 (208)
Q Consensus       150 ~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  205 (208)
                      +..|.||||+|+..|+.+++++|++.|++++.+|..|.||+++|.......+.+++
T Consensus       229 d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~  284 (299)
T 1s70_B          229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ  284 (299)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHHH
T ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            56799999999999999999999999999999999999999999765444444433

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=1.4e-29  Score=174.35  Aligned_cols=148  Identities=21%  Similarity=0.266  Sum_probs=125.5

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHH
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV  107 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~  107 (208)
                      ++.++|+.|+..|+.+++++|+++ .                           +.+++..|..|.||||+ +..|+.+++
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~-~---------------------------~~~~~~~~~~g~t~L~~-~~~~~~~~v   51 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHR-E---------------------------LVHPDALNRFGKTALQV-MMFGSTAIA   51 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHT-T---------------------------CCCTTCCCTTSCCHHHH-SCTTCHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHh-h---------------------------CcCccccCCCCCcHHHH-HHcCCHHHH
Confidence            356899999999999999998775 2                           22455677778888888 788888888


Q ss_pred             HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCc
Q psy4236         108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLT  180 (208)
Q Consensus       108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~  180 (208)
                      ++|++.|++  ++.. +..|.||||+|+..|+.+++++|++.       +..|.||||+|+..|+.+++++|++. ++++
T Consensus        52 ~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~  127 (156)
T 1bd8_A           52 LELLKQGAS--PNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH  127 (156)
T ss_dssp             HHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT
T ss_pred             HHHHHCCCC--CCCc-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC
Confidence            888888877  6666 36788888888888888888888754       46688999999999999999999999 9999


Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         181 VKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       181 ~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ..|..|.||+++|+.+|+.+++++|+++
T Consensus       128 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          128 RRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999999999874

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=4.6e-31  Score=198.12  Aligned_cols=175  Identities=17%  Similarity=0.178  Sum_probs=156.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCC--CcccCCCCCCCcc----chHHHHHHHHHHcCC-CCCcCCCCCccHHHHHH---
Q psy4236          30 SEGVLKAARVGDIKMLKDLHSQGYS--LKKIPPKDDHPNL----NHFFFQLKDLHSQGY-SLLSIDSVGQTALHYGS---   99 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~~g~~--~~~~~~~~~~~~~----~~~~~~~~~l~~~g~-~~~~~d~~g~t~l~~a~---   99 (208)
                      .+++|.|+..|+.+.++.+++.+.+  +|..+..|.+|++    .+..+++++|++.|. +++..+..|.||||+|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            3467888889999999999888766  8888899998875    566889999999998 99999999999999999   


Q ss_pred             --hcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHH
Q psy4236         100 --RYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICC  170 (208)
Q Consensus       100 --~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~  170 (208)
                        ..+..+++++|++.|..  .... +..|+||||+|+..|+.+++++|++.       +..|.||||+|+..|+.++++
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~--~~~~-~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNI--NAKA-SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCT--TCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCC--cccc-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence              66889999999999976  5555 46799999999999999999999854       577999999999999999999


Q ss_pred             HHHh-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         171 MLVA-GGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       171 ~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +|++ .|++++..|..|.||+++|+.+|+.+++++|++
T Consensus       234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  271 (276)
T 4hbd_A          234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS  271 (276)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999 899999999999999999999999999999986

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=7.8e-30  Score=196.36  Aligned_cols=177  Identities=22%  Similarity=0.180  Sum_probs=153.8

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCC----------CCCCCcc----chHHHHHHHHHH-cCCCCCcCC
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPP----------KDDHPNL----NHFFFQLKDLHS-QGYSLLSID   88 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~----------~~~~~~~----~~~~~~~~~l~~-~g~~~~~~d   88 (208)
                      ..+..|.||++.|+..|+.+++++|+++|++++....          .|.+|++    .+..+++++|++ .|++++.+|
T Consensus       120 ~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d  199 (337)
T 4g8k_A          120 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD  199 (337)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCC
T ss_pred             hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccC
Confidence            3456688999999999999999999999999987543          3456653    566899999996 699999999


Q ss_pred             CCCccHHHHHHhcCC----HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcH
Q psy4236          89 SVGQTALHYGSRYGH----KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTA  156 (208)
Q Consensus        89 ~~g~t~l~~a~~~g~----~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~  156 (208)
                      ..|.|+++.++..+.    ..++++|++.|++  ++.+ +..|+||||+|+..++.++++.|+..        +..|.||
T Consensus       200 ~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad--~n~~-d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~Tp  276 (337)
T 4g8k_A          200 NMGRNALIHALLSSDDSDVEAITHLLLDHGAD--VNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA  276 (337)
T ss_dssp             TTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC--TTCC-CGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBH
T ss_pred             CCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC--CCCc-CCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCH
Confidence            999999998876554    4578999999999  8877 47899999999999999999999843        5789999


Q ss_pred             HHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         157 LHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       157 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ||+|+..|+.+++++|+++|++++..     +||++|+.+|+.+++++|+++
T Consensus       277 L~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~  323 (337)
T 4g8k_A          277 LLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSH  323 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHC
Confidence            99999999999999999999998764     599999999999999999874

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=6.3e-30  Score=177.70  Aligned_cols=151  Identities=26%  Similarity=0.405  Sum_probs=133.8

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD  105 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~  105 (208)
                      +.++.++|+.|++.|+.+++++|++.+                            +.+++..+..|.||||+|+..|+.+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~----------------------------~~~~~~~~~~g~t~L~~A~~~~~~~   56 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQ----------------------------SVNCRDIEGRQSTPLHFAAGYNRVS   56 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTT----------------------------TTTCCCTTTTCCCHHHHHHHTTCHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcC----------------------------CCCccccccCCCCHHHHHHHcChHH
Confidence            456788999999999999999987642                            2344567778999999999999999


Q ss_pred             HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCC
Q psy4236         106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS  178 (208)
Q Consensus       106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~  178 (208)
                      ++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|++.|++
T Consensus        57 ~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  133 (165)
T 3twr_A           57 VVEYLLQHGAD--VHAK-DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD  133 (165)
T ss_dssp             HHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHhcCCC--CCcc-CCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999988  7777 47899999999999999999999955       56789999999999999999999999999


Q ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         179 LTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       179 ~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ++.+|..|.||+++|.. ++.+++++|+++
T Consensus       134 ~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A          134 PTKKNRDGNTPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred             CcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence            99999999999999877 899999999864

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=4.3e-31  Score=202.78  Aligned_cols=164  Identities=17%  Similarity=0.108  Sum_probs=133.9

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchH-------HHHHHHHHHcC-CCCCcCCCCCccHHH
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHF-------FFQLKDLHSQG-YSLLSIDSVGQTALH   96 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~g-~~~~~~d~~g~t~l~   96 (208)
                      .+..|.||||+|+..|+.+++++|+++|++++.++..|.+|++...       .++++.|++.+ .+++.+|..|+||||
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh  206 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  206 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHH
Confidence            4667889999999999999999999999999999999999976332       36677777776 678999999999999


Q ss_pred             HHHh----cCCHHHHHHHHHc--------------------CCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc---
Q psy4236          97 YGSR----YGHKDVVKYIIAC--------------------APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF---  149 (208)
Q Consensus        97 ~a~~----~g~~~~~~~ll~~--------------------g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~---  149 (208)
                      +|+.    .|+.+++++|++.                    |++  ++.. +..|.||||+|+.      +++|++.   
T Consensus       207 ~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~--~~~~-~~~g~t~L~~a~~------~~~Ll~~~~n  277 (327)
T 1sw6_A          207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK--PNDK-NGERKDSILENLD------LKWIIANMLN  277 (327)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------------CHHHHHCS------HHHHHHHTTT
T ss_pred             HHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC--cccc-cccCCChhHHHHH------HHHHHHhCCC
Confidence            9999    8999999999987                    666  6666 4789999999985      6777643   


Q ss_pred             --CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q psy4236         150 --SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN  197 (208)
Q Consensus       150 --~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  197 (208)
                        +..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+.+|
T Consensus       278 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence              678999999999999999999999999999999999999999998765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=1.1e-30  Score=196.97  Aligned_cols=168  Identities=15%  Similarity=0.119  Sum_probs=153.4

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCC-ccHHHHHHhcCC
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVG-QTALHYGSRYGH  103 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g-~t~l~~a~~~g~  103 (208)
                      |.||||.|+..|+.+++++|+++|++++..+..+.+|++    .+..+++++|+++|++++.++..| .||||+|+..|+
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~  141 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND  141 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Confidence            678999999999999999999999999999999999975    567899999999999999999999 899999999999


Q ss_pred             HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcH-HHHHHhhCCHHHHHHHHhC
Q psy4236         104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTA-LHKAAMFKRRSICCMLVAG  175 (208)
Q Consensus       104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~-l~~A~~~~~~~~~~~Ll~~  175 (208)
                      .+++++|++.|++  ...  ...|.||||+|+..|+.+++++|++.       +..|.|| ||+|+..|+.+++++|+++
T Consensus       142 ~~~v~~Ll~~g~~--~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~  217 (285)
T 3kea_A          142 VSIVSYFLSEIPS--TFD--LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY  217 (285)
T ss_dssp             HHHHHHHHTTSCT--TCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred             HHHHHHHHhCCCc--ccc--ccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999987  422  23789999999999999999999954       5678897 9999999999999999999


Q ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         176 GASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       176 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      |++++..+.       .|+..|+.+++++|++
T Consensus       218 gad~~~~~~-------~a~~~~~~~iv~~Ll~  242 (285)
T 3kea_A          218 DINIYSANL-------ENVLLDDAEIAKMIIE  242 (285)
T ss_dssp             CBCSTTTTG-------GGGTTTCHHHHHHHHH
T ss_pred             CCCCCCCCh-------hhhhcCCHHHHHHHHH
Confidence            999999884       5677999999999986

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.3e-29  Score=178.42  Aligned_cols=150  Identities=24%  Similarity=0.302  Sum_probs=112.0

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDV  106 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~  106 (208)
                      +++.++|+.|+..|+.+++++|++++                            +.+++..|..|.||||+|+..|+.++
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~----------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~   54 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNT----------------------------ENDLNQGDDHGFSPLHWACREGRSAV   54 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCT----------------------------TSCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcC----------------------------cccccccCCCCCCHHHHHHHcCcHHH
Confidence            34567999999999999999987762                            23445566777777777777777777


Q ss_pred             HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCC
Q psy4236         107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL  179 (208)
Q Consensus       107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~  179 (208)
                      +++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|+++|+++
T Consensus        55 v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  131 (179)
T 3f6q_A           55 VEMLIMRGAR--INVM-NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV  131 (179)
T ss_dssp             HHHHHHTTCC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHcCCC--CCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            7777777776  6665 35677777777777777777777743       456777888888888888888888888888


Q ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         180 TVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       180 ~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +..|..|.||+++|+..++.+++++|++
T Consensus       132 ~~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A          132 SICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             SBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             chhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            8888888888888877777777777765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=5.9e-30  Score=196.48  Aligned_cols=179  Identities=13%  Similarity=0.062  Sum_probs=142.9

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCC--------------CCCC-------CccchHHHHHHHHHHc
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPP--------------KDDH-------PNLNHFFFQLKDLHSQ   80 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~--------------~~~~-------~~~~~~~~~~~~l~~~   80 (208)
                      +...+..+.++++     |+.++++.|+++|++++....              .+.+       +......++++.|++.
T Consensus        45 i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~  119 (327)
T 1sw6_A           45 IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT  119 (327)
T ss_dssp             CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS
T ss_pred             cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc
Confidence            4444455666665     999999999999988765211              1111       1224456788999999


Q ss_pred             CCCCCc-CCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCc-------HHHHHHHH----h
Q psy4236          81 GYSLLS-IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR-------RSICWMFL----F  148 (208)
Q Consensus        81 g~~~~~-~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~-------~~~~~~l~----~  148 (208)
                      |++++. .|..|.||||+|+..|+.+++++|++.|++  ++.+ +..|+||||+|+..|+       ..+++.+.    .
T Consensus       120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad--~n~~-d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~  196 (327)
T 1sw6_A          120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN--RLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL  196 (327)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCCc-CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC
Confidence            999999 899999999999999999999999999999  8877 4789999999999988       34444442    3


Q ss_pred             cCCCCCcHHHHHHh----hCCHHHHHHHHhCCC---------------------------------------------CC
Q psy4236         149 FSSRGQTALHKAAM----FKRRSICCMLVAGGA---------------------------------------------SL  179 (208)
Q Consensus       149 ~~~~~~t~l~~A~~----~~~~~~~~~Ll~~g~---------------------------------------------~~  179 (208)
                      .+..|.||||+|+.    .|+.+++++|++.++                                             ++
T Consensus       197 ~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~  276 (327)
T 1sw6_A          197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML  276 (327)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCC
Confidence            47889999999999    899999999987643                                             57


Q ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         180 TVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       180 ~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      +.+|..|+||||+|+.+|+.+++++|++.
T Consensus       277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~  305 (327)
T 1sw6_A          277 NAQDSNGDTCLNIAARLGNISIVDALLDY  305 (327)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            88899999999999999999999999863

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=9.9e-30  Score=186.50  Aligned_cols=171  Identities=15%  Similarity=0.089  Sum_probs=150.5

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCC------CCcCCCCCcc
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYS------LLSIDSVGQT   93 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~------~~~~d~~g~t   93 (208)
                      ..+..|.||||.|+..|+.+++++|+++|++++..+..+.+|++    .+..+++++|++.|.+      ++..+..|.|
T Consensus        40 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  119 (236)
T 1ikn_D           40 FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT  119 (236)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCC
Confidence            34556889999999999999999999999999999999999975    4568999999999976      4677888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCH
Q psy4236          94 ALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRR  166 (208)
Q Consensus        94 ~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~  166 (208)
                      |||+|+..|+.+++++|++.|++  ++..+...|.||||+|+..++.+++++|++.       +..|.||||+|+..|+.
T Consensus       120 ~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  197 (236)
T 1ikn_D          120 CLHLASIHGYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST  197 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCch
Confidence            99999999999999999999998  7777433899999999999999999999965       56799999999999999


Q ss_pred             HHHHHHHhCCCCCc--ccCCCCCCHHHHHHHc
Q psy4236         167 SICCMLVAGGASLT--VKDYDSNTPRALALLA  196 (208)
Q Consensus       167 ~~~~~Ll~~g~~~~--~~~~~g~t~l~~a~~~  196 (208)
                      +++++|+++|++..  ..+..|.+|.+.+...
T Consensus       198 ~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          198 RIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            99999999999876  7788888887665543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.2e-31  Score=196.05  Aligned_cols=175  Identities=15%  Similarity=0.027  Sum_probs=153.6

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      ...+.++|+.|+..|+.+++++|+++|++++..+..|.+|++    .+..+++++|++.|++++.+|..|+||||+|+..
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~   97 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC   97 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            445678999999999999999999999999999999999975    5678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCCCccHHHHH--HhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHH
Q psy4236         102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKA--AMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCML  172 (208)
Q Consensus       102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a--~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~L  172 (208)
                      |+.+++++|++.|++  ++..++..|+||||+|  +..++.+++++|++.       +..+.+|++.++...   ..++|
T Consensus        98 g~~~~v~~Ll~~ga~--~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~l  172 (229)
T 2vge_A           98 NDTVICMALVQHGAA--IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF---GDELS  172 (229)
T ss_dssp             TCHHHHHHHHTTTCC--TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS---TTBCC
T ss_pred             CCHHHHHHHHHcCCC--cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc---ccccC
Confidence            999999999999998  7777546899999999  999999999999954       455678887554443   33678


Q ss_pred             HhCCCC--CcccCCCCCCHHHHHHHcCCHHHHHHH
Q psy4236         173 VAGGAS--LTVKDYDSNTPRALALLANDTELAAYL  205 (208)
Q Consensus       173 l~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~L  205 (208)
                      +..|++  ++.+|..|+||||+|+.+|+.++++.+
T Consensus       173 l~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          173 FREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             BCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             ccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            889998  778899999999999999998887653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=4.7e-29  Score=193.88  Aligned_cols=178  Identities=14%  Similarity=0.105  Sum_probs=147.3

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHc----CCCCcc-----------------cCCCCCCCcc----ch--HHHHHHHHHHc
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQ----GYSLKK-----------------IPPKDDHPNL----NH--FFFQLKDLHSQ   80 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~----g~~~~~-----------------~~~~~~~~~~----~~--~~~~~~~l~~~   80 (208)
                      .+.||||.|+..|+.+++++|+++    |++++.                 .+..+.++++    .+  ..+++++|++.
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~  162 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL  162 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            355666666666666666666666    666665                 7778888864    45  79999999999


Q ss_pred             CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCC---ccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------C
Q psy4236          81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSS---ILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------S  150 (208)
Q Consensus        81 g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~  150 (208)
                      |++++..|..|.||||+|+..|+.+++++|++.|++.   .++.. +..|+||||+|+..|+.+++++|++.       +
T Consensus       163 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d  241 (364)
T 3ljn_A          163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED  241 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCC
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            9999999999999999999999999999999998762   14445 46799999999999999999999965       5


Q ss_pred             CCCCcHHHHHHhhCCHHHHHHHHhCCCCCcc------------cCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236         151 SRGQTALHKAAMFKRRSICCMLVAGGASLTV------------KDYDSNTPRALALLANDTELAAYLE  206 (208)
Q Consensus       151 ~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~------------~~~~g~t~l~~a~~~~~~~~~~~L~  206 (208)
                      ..|.||||+|+..|+.+++++|+++|++++.            .+..+++|+++|+..++.+.+..|+
T Consensus       242 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll  309 (364)
T 3ljn_A          242 NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL  309 (364)
T ss_dssp             TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHH
Confidence            6799999999999999999999999877533            5667889999999988776666554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=1.5e-28  Score=183.91  Aligned_cols=163  Identities=15%  Similarity=0.136  Sum_probs=132.7

Q ss_pred             hhhchHHHHHHHHh---CCHHHHHHHHHcCCCCc-------c----cCCCCCCCcc----chHHHHHHHHHHcCCCCCcC
Q psy4236          26 LEKTSEGVLKAARV---GDIKMLKDLHSQGYSLK-------K----IPPKDDHPNL----NHFFFQLKDLHSQGYSLLSI   87 (208)
Q Consensus        26 ~~~~~~~l~~A~~~---g~~~~~~~Li~~g~~~~-------~----~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~   87 (208)
                      +..|.||||.|+..   |+.+++++|+++|++++       .    .+..+.+|++    .+..+++++|+++|++++..
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~  130 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA  130 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc
Confidence            56789999999987   99999999999987632       2    4557888865    56789999999999999999


Q ss_pred             CC--------------CCccHHHHHHhcCCHHHHHHHHH---cCCCCccccCCCCCCccHHHHHHhhCc---------HH
Q psy4236          88 DS--------------VGQTALHYGSRYGHKDVVKYIIA---CAPSSILNMQDNDKGQTALHKAAMFKR---------RS  141 (208)
Q Consensus        88 d~--------------~g~t~l~~a~~~g~~~~~~~ll~---~g~~~~~~~~~~~~~~t~l~~a~~~~~---------~~  141 (208)
                      +.              .|.||||+|+..|+.+++++|++   .|++  ++.+ +..|+||||+|+..++         .+
T Consensus       131 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad--~~~~-d~~g~tpLh~A~~~~~~~~~~~~~~~~  207 (273)
T 2pnn_A          131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD--ISAR-DSVGNTVLHALVEVADNTVDNTKFVTS  207 (273)
T ss_dssp             BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC--TTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC--ceee-CCCCCcHHHHHHHccCcchhHHHHHHH
Confidence            87              79999999999999999999999   8988  8877 4789999999999887         78


Q ss_pred             HHHHHHh--------------cCCCCCcHHHHHHhhCCHHHHHHHHhCCC-CCcccCCCCCCHHH
Q psy4236         142 ICWMFLF--------------FSSRGQTALHKAAMFKRRSICCMLVAGGA-SLTVKDYDSNTPRA  191 (208)
Q Consensus       142 ~~~~l~~--------------~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~  191 (208)
                      ++++|++              ++..|.||||+|+..|+.+++++|+++|+ |+......+.+|.+
T Consensus       208 ~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            8998883              47789999999999999999999999999 88877777766643

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=1.3e-27  Score=170.93  Aligned_cols=151  Identities=23%  Similarity=0.206  Sum_probs=136.3

Q ss_pred             HHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHH-HcCCCCCcCCCCCccHHHH
Q psy4236          23 INILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLH-SQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        23 ~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~-~~g~~~~~~d~~g~t~l~~   97 (208)
                      ...+..+.||||.|+..|+.+++++|+++|++++..+..+.+|++    .+..+++++|+ ..+.+++..+..|.||||+
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  112 (201)
T 3hra_A           33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP  112 (201)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHH
Confidence            334566889999999999999999999999999999999999975    56789999999 6777999999999999999


Q ss_pred             HHhcCCHHHHHHHHHcC-CCCccccCCCCCCccHHHHHHhhCc-----HHHHHHHHhc-------CCCCCcHHHHHHhhC
Q psy4236          98 GSRYGHKDVVKYIIACA-PSSILNMQDNDKGQTALHKAAMFKR-----RSICWMFLFF-------SSRGQTALHKAAMFK  164 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g-~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~l~~~-------~~~~~t~l~~A~~~~  164 (208)
                      |+..|+.+++++|++.| ++  ++.. +..|+||||+|+..+.     .+++++|++.       +..|.||||+|+..|
T Consensus       113 A~~~~~~~~v~~Ll~~g~~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  189 (201)
T 3hra_A          113 AAEKGHIDNVKLLLEDGRED--IDFQ-NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG  189 (201)
T ss_dssp             HHHTTCHHHHHHHHHHCCCC--TTCC-CTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHcCCCC--cCCC-CCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Confidence            99999999999999999 66  7777 4789999999999887     9999999954       567999999999999


Q ss_pred             CHHHHHHHHhCC
Q psy4236         165 RRSICCMLVAGG  176 (208)
Q Consensus       165 ~~~~~~~Ll~~g  176 (208)
                      +.+++++|+++|
T Consensus       190 ~~~~~~~Ll~~G  201 (201)
T 3hra_A          190 YTEISKILAQYN  201 (201)
T ss_dssp             CHHHHHHHHTCC
T ss_pred             CHhHHHHHHhcC
Confidence            999999999876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=1.4e-27  Score=166.41  Aligned_cols=128  Identities=27%  Similarity=0.338  Sum_probs=105.7

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      +...+..|.|||+.|+..++.++++.|+++|++                             ++.+|..|+||||+|+..
T Consensus        30 vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-----------------------------~~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A           30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-----------------------------VNAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------------------TTCCCTTSCCHHHHHHHT
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-----------------------------hhhhccCCCCHHHHHHHc
Confidence            334456788999999999999999997665554                             456788899999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHh
Q psy4236         102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVA  174 (208)
Q Consensus       102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~  174 (208)
                      |+.+++++|++.|++  ++.+ +..|+||||+|+..|+.+++++|++.       +..|.||||+|+..|+.+++++|++
T Consensus        81 g~~~~v~~Ll~~gad--vn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  157 (169)
T 4gpm_A           81 GHKEVVKLLISKGAD--VNAK-DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK  157 (169)
T ss_dssp             TCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHHHCcCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999988  7777 47899999999999999999999854       5678999999999999999999999


Q ss_pred             CCCCCcc
Q psy4236         175 GGASLTV  181 (208)
Q Consensus       175 ~g~~~~~  181 (208)
                      +|++++.
T Consensus       158 ~GA~ie~  164 (169)
T 4gpm_A          158 QGGWLEH  164 (169)
T ss_dssp             C------
T ss_pred             CCCCcCC
Confidence            9999874

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=2.4e-27  Score=173.20  Aligned_cols=139  Identities=24%  Similarity=0.300  Sum_probs=125.1

Q ss_pred             chHHHHHHHHHHc-CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCcc---ccCCCCCCccHHHHHHhhCcHHHH
Q psy4236          68 NHFFFQLKDLHSQ-GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSIL---NMQDNDKGQTALHKAAMFKRRSIC  143 (208)
Q Consensus        68 ~~~~~~~~~l~~~-g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~---~~~~~~~~~t~l~~a~~~~~~~~~  143 (208)
                      .+..+++++|++. |++++.+|..|+||||+|+..|+.+++++|++.|++...   +.. +..|.||||+|+..|+.+++
T Consensus        13 ~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v   91 (232)
T 2rfa_A           13 ENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSE-LYEGQTALHIAVINQNVNLV   91 (232)
T ss_dssp             TTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCST-TTTTCCHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccccccc-CCCCcCHHHHHHHcCCHHHH
Confidence            5668999999998 999999999999999999999999999999999987211   333 35799999999999999999


Q ss_pred             HHHHhcC--------------------CCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHH-
Q psy4236         144 WMFLFFS--------------------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA-  202 (208)
Q Consensus       144 ~~l~~~~--------------------~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~-  202 (208)
                      ++|++.+                    ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.+|+.+++ 
T Consensus        92 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~  171 (232)
T 2rfa_A           92 RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC  171 (232)
T ss_dssp             HHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHH
T ss_pred             HHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHH
Confidence            9999552                    2599999999999999999999999999999999999999999999999988 


Q ss_pred             ---HHHhh
Q psy4236         203 ---AYLEK  207 (208)
Q Consensus       203 ---~~L~~  207 (208)
                         ++|++
T Consensus       172 ~i~~~Ll~  179 (232)
T 2rfa_A          172 QMYNLLLS  179 (232)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence               77765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=3.1e-27  Score=177.26  Aligned_cols=150  Identities=24%  Similarity=0.260  Sum_probs=137.8

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCC-CCcccCCCCCCCcc---------chHHHHHHHHHHcCCCCCcCCCCCcc
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGY-SLKKIPPKDDHPNL---------NHFFFQLKDLHSQGYSLLSIDSVGQT   93 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~-~~~~~~~~~~~~~~---------~~~~~~~~~l~~~g~~~~~~d~~g~t   93 (208)
                      ..+..|.||||.|+..|+.+++++|+++|+ +++..+..|.+|++         .+..+++++|++.|..++..+..|.|
T Consensus       106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  185 (276)
T 4hbd_A          106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQT  185 (276)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCC
Confidence            345678999999999999999999999998 99999999999864         36688999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh--------cCCCCCcHHHHHHhhCC
Q psy4236          94 ALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF--------FSSRGQTALHKAAMFKR  165 (208)
Q Consensus        94 ~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~--------~~~~~~t~l~~A~~~~~  165 (208)
                      |||+|+..|+.+++++|++.|++  ++.+ +..|+||||+|+..|+.+++++|++        .+..|.||||+|+..|+
T Consensus       186 pLh~A~~~g~~~~v~~Ll~~gad--~n~~-d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~  262 (276)
T 4hbd_A          186 ALMLAVSHGRVDVVKALLACEAD--VNVQ-DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ  262 (276)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCC--CCCC-CCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999  8887 4789999999999999999999997        26779999999999999


Q ss_pred             HHHHHHHHhCC
Q psy4236         166 RSICCMLVAGG  176 (208)
Q Consensus       166 ~~~~~~Ll~~g  176 (208)
                      .+++++|++++
T Consensus       263 ~~iv~~Ll~~~  273 (276)
T 4hbd_A          263 SEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcc
Confidence            99999999853

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=3.3e-28  Score=178.93  Aligned_cols=148  Identities=25%  Similarity=0.260  Sum_probs=94.3

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDV  106 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~  106 (208)
                      ..|.|||+.|++.|+.+.++.|+++|++++.                              +..|.||||.|+..|+.++
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~------------------------------~~~~~t~L~~A~~~g~~~~   52 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF------------------------------NPLPLALLLDSSLEGEFDL   52 (239)
T ss_dssp             ----------------------------------------------------------------CHHHHHHHHHHTCHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCccc------------------------------CchhhHHHHHHHHcCCHHH
Confidence            3578999999999999999998888877642                              2456788888888888888


Q ss_pred             HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCC
Q psy4236         107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL  179 (208)
Q Consensus       107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~  179 (208)
                      +++|++.|++  ++.. +..|.||||+|+..|+.+++++|++.       +..|.||||+|+..|+.+++++|+++|+++
T Consensus        53 v~~Ll~~g~~--~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  129 (239)
T 1ycs_B           53 VQRIIYEVDD--PSLP-NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV  129 (239)
T ss_dssp             HHHHTSTTSS--CCCC-CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCC--CCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            8888888877  7666 46788888888888888888888854       466888888888888888888888888888


Q ss_pred             cccCCCCC-CHHHHH--HHcCCHHHHHHHhh
Q psy4236         180 TVKDYDSN-TPRALA--LLANDTELAAYLEK  207 (208)
Q Consensus       180 ~~~~~~g~-t~l~~a--~~~~~~~~~~~L~~  207 (208)
                      +..+..|. ||+|+|  +.+|+.+++++|++
T Consensus       130 ~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B          130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             ceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            88887776 899888  77788888888875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=2.1e-27  Score=159.89  Aligned_cols=123  Identities=19%  Similarity=0.215  Sum_probs=115.1

Q ss_pred             CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCC-
Q psy4236          81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSR-  152 (208)
Q Consensus        81 g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~-  152 (208)
                      +.+++.++..|.||||+|+..|+.+++++|++.|++  ++.. +..|+||||+|+. ++.+++++|++.       +.. 
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~   77 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD--PNAL-NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT   77 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC--TTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC--cCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence            467888999999999999999999999999999988  7777 4789999999999 999999999965       455 


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       153 ~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      |.||||+|+..|+.+++++|++.|++++..|..|.||+|+|+.+++.+++++|++
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~  132 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA  132 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999986

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=5.1e-27  Score=174.04  Aligned_cols=154  Identities=18%  Similarity=0.083  Sum_probs=136.5

Q ss_pred             hhhhchHHHHHHHHh---CCHHHHHHHHHcCCCCcccC-----------CCCCCCcc----chHHHHHHHHHHcCCCCCc
Q psy4236          25 ILEKTSEGVLKAARV---GDIKMLKDLHSQGYSLKKIP-----------PKDDHPNL----NHFFFQLKDLHSQGYSLLS   86 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~---g~~~~~~~Li~~g~~~~~~~-----------~~~~~~~~----~~~~~~~~~l~~~g~~~~~   86 (208)
                      .+..|.||||.|+..   |+.+++++|+++|++++..+           ..+.+|++    .+..+++++|+++|++++.
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  118 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL  118 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            466789999999999   99999999999999887544           56788865    5678999999999999999


Q ss_pred             CCCC-------------CccHHHHHHhcCCHHHHHHHHH---cCCCCccccCCCCCCccHHHHHHh--hCcHH-------
Q psy4236          87 IDSV-------------GQTALHYGSRYGHKDVVKYIIA---CAPSSILNMQDNDKGQTALHKAAM--FKRRS-------  141 (208)
Q Consensus        87 ~d~~-------------g~t~l~~a~~~g~~~~~~~ll~---~g~~~~~~~~~~~~~~t~l~~a~~--~~~~~-------  141 (208)
                      .+..             |.||||+|+..|+.+++++|++   .|++  ++.+ +..|+||||+|+.  .++.+       
T Consensus       119 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~--~n~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~  195 (256)
T 2etb_A          119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS--LEAT-DSLGNTVLHALVMIADNSPENSALVIH  195 (256)
T ss_dssp             CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC--TTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC--cCcc-CCCCCCHHHHHHHcccCCchhhHHHHH
Confidence            9886             9999999999999999999999   8988  8887 4789999999998  77887       


Q ss_pred             HHHHHHh--------------cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcc
Q psy4236         142 ICWMFLF--------------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTV  181 (208)
Q Consensus       142 ~~~~l~~--------------~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  181 (208)
                      ++++|++              ++..|.||||+|+..|+.+++++|+++|.+...
T Consensus       196 iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             HHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC
Confidence            9999874              357799999999999999999999998877554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=2.7e-27  Score=167.59  Aligned_cols=146  Identities=14%  Similarity=0.144  Sum_probs=102.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH----
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK----  104 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~----  104 (208)
                      ++++|+.|++.|+.+.++.+++.+.+.  .+                            +..|+||||+|+..|+.    
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~----------------------------~~~g~T~Lh~A~~~~~~~~~~   55 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KE----------------------------SVLKSNILYDVLRNNNDEARY   55 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HH----------------------------HHHTTTHHHHHTTCSCHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--cc----------------------------ccCCCCHHHHHHHcCCcchHH
Confidence            457899999999999999988765432  11                            14455666666665543    


Q ss_pred             HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCc------HHHHHHHHhc-------CCCCC-cHHHHHHhhC-----C
Q psy4236         105 DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR------RSICWMFLFF-------SSRGQ-TALHKAAMFK-----R  165 (208)
Q Consensus       105 ~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~------~~~~~~l~~~-------~~~~~-t~l~~A~~~~-----~  165 (208)
                      +++++|++.|++  ++.++ ..|+||||+|+..++      .+++++|++.       +..|. ||||+|+..+     .
T Consensus        56 ~iv~~Ll~~Gad--vn~~d-~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~  132 (186)
T 3t8k_A           56 KISMFLINKGAD--IKSRT-KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEM  132 (186)
T ss_dssp             HHHHHHHHTTCC--SSCCC-TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHH
T ss_pred             HHHHHHHHCCCC--CCCCC-CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhH
Confidence            356666666665  55552 556666666665553      3455555533       34455 6666666633     3


Q ss_pred             HHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         166 RSICCMLVA-GGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       166 ~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .+++++|++ +|+|++.+|..|.||||+|+..|+.+++++|.+
T Consensus       133 ~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          133 IPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            568999999 999999999999999999999999999999864

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=6.4e-27  Score=161.14  Aligned_cols=140  Identities=15%  Similarity=0.119  Sum_probs=83.4

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc---chHHHHHHHHHHcCCCCCcCCCCCcc-HHHHHHh
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL---NHFFFQLKDLHSQGYSLLSIDSVGQT-ALHYGSR  100 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~d~~g~t-~l~~a~~  100 (208)
                      ....+.||||.|+..|+.+++++|+++|++++..+..+.++++   .+..+++++|+++|++++.+|..|.| |||+|+.
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSCTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence            3556789999999999999999988888777765555555543   33455555555555555555555555 5555555


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCc
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLT  180 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~  180 (208)
                      .|+.+++++|++.|++  ++..                           +..|.||||+|+..|+.+++++|+++|++++
T Consensus        88 ~~~~~~v~~Ll~~ga~--~~~~---------------------------d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~  138 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGAR--LDVR---------------------------DAWGRLPVDLAEELGHRDVARYLRAAAGGTR  138 (156)
T ss_dssp             HTCHHHHHHHHHHTCC--SSCC---------------------------CTTCCCHHHHHHHHTCHHHHHHHSSCC----
T ss_pred             CCCHHHHHHHHHcCCC--Cccc---------------------------CCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC
Confidence            5555555555555554  3332                           3456777777778888999999999999999


Q ss_pred             ccCCCCCCHHHHH
Q psy4236         181 VKDYDSNTPRALA  193 (208)
Q Consensus       181 ~~~~~g~t~l~~a  193 (208)
                      ..+..|.||.+-+
T Consensus       139 ~~~~~g~t~~~~~  151 (156)
T 1bi7_B          139 GSNHARIDAAEGP  151 (156)
T ss_dssp             -------------
T ss_pred             ccCcCcCcccccC
Confidence            9999999988743

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1e-25  Score=151.62  Aligned_cols=125  Identities=26%  Similarity=0.330  Sum_probs=101.2

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD  105 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~  105 (208)
                      ...+.+|||.|+..|+.+++++|+++|++                             ++.+|..|.||||+|+..|+.+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----------------------------~~~~~~~g~t~L~~A~~~~~~~   61 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD-----------------------------VNAKDEYGLTPLYLATAHGHLE   61 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC-----------------------------TTCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC-----------------------------CCCcCCCCCCHHHHHHHcCCHH
Confidence            44567889999999999998886665544                             4457778889999999999999


Q ss_pred             HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCC
Q psy4236         106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD  185 (208)
Q Consensus       106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  185 (208)
                      ++++|++.|++  ++..+ .                          .|.||||+|+..|+.+++++|+++|++++..|..
T Consensus        62 ~v~~Ll~~g~~--~~~~d-~--------------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  112 (136)
T 2jab_A           62 IVEVLLKNGAD--VNAVD-A--------------------------IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF  112 (136)
T ss_dssp             HHHHHHHTTCC--TTCCC-T--------------------------TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHHcCCC--CCcCC-C--------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCC
Confidence            99999988877  55442 3                          3556666666777788888999999999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         186 SNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       186 g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      |.||+++|+.+|+.+++++|++.
T Consensus       113 g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A          113 GKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999999999999999863

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=1.6e-26  Score=171.71  Aligned_cols=153  Identities=14%  Similarity=0.163  Sum_probs=132.2

Q ss_pred             hhchHHHHHHH---HhCCHHHHHHHHHcCCC-----------CcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCC
Q psy4236          27 EKTSEGVLKAA---RVGDIKMLKDLHSQGYS-----------LKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSID   88 (208)
Q Consensus        27 ~~~~~~l~~A~---~~g~~~~~~~Li~~g~~-----------~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d   88 (208)
                      ..|.||||.|+   ..|+.+++++|+++|++           ++..+..+.+|++    .+..+++++|+++|++++..+
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  123 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA  123 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccc
Confidence            55889999999   67999999999999855           3334447778865    567899999999999999998


Q ss_pred             --------------CCCccHHHHHHhcCCHHHHHHHHH---cCCCCccccCCCCCCccHHHHHHhhCc---------HHH
Q psy4236          89 --------------SVGQTALHYGSRYGHKDVVKYIIA---CAPSSILNMQDNDKGQTALHKAAMFKR---------RSI  142 (208)
Q Consensus        89 --------------~~g~t~l~~a~~~g~~~~~~~ll~---~g~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~  142 (208)
                                    ..|.||||+|+..|+.+++++|++   .|++  ++.+ +..|+||||+|+..++         .++
T Consensus       124 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~--~~~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~~  200 (260)
T 3jxi_A          124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD--LRRQ-DSRGNTVLHALVAIADNTRENTKFVTKM  200 (260)
T ss_dssp             EECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC--TTCC-CTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred             cccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC--Cccc-CCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence                          689999999999999999999999   8888  8877 4789999999998877         688


Q ss_pred             HHHHHh--------------cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCccc
Q psy4236         143 CWMFLF--------------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVK  182 (208)
Q Consensus       143 ~~~l~~--------------~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  182 (208)
                      +++|++              .+..|.||||+|+..|+.+++++|+++|.+....
T Consensus       201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAA  254 (260)
T ss_dssp             HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccc
Confidence            888873              3578999999999999999999999998776543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.3e-26  Score=156.19  Aligned_cols=123  Identities=24%  Similarity=0.243  Sum_probs=110.0

Q ss_pred             CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCC
Q psy4236          81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRG  153 (208)
Q Consensus        81 g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~  153 (208)
                      |+++ .+|..|.||||+|+..|+.+++++|++.|++  ++.. +..|+||||+|+..++.+++++|++.       +..|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g   76 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSD--PNVK-DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN   76 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--SCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGG
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCC
Confidence            5667 6889999999999999999999999999988  7777 47899999999999999999999964       4568


Q ss_pred             CcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         154 QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       154 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .||||+|+..|+.+++++|++.|++++..|..|.||+++|+..+..+++++|.+
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           77 DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            899999999999999999999999999999999999999999999999887764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.8e-28  Score=190.86  Aligned_cols=180  Identities=17%  Similarity=0.036  Sum_probs=142.5

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCC---cccCCCCCCCcc----chHHHHHHHHHHcCCCC---CcCCCCCcc
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSL---KKIPPKDDHPNL----NHFFFQLKDLHSQGYSL---LSIDSVGQT   93 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~---~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~---~~~d~~g~t   93 (208)
                      +...++.||||.|++.|+.+++++|+++|+..   +..+..+.+|++    .++.+++++|+++|+++   +..+.. .|
T Consensus        87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~T  165 (376)
T 2aja_A           87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YH  165 (376)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HH
T ss_pred             HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CC
Confidence            33445669999999999999999999999832   122334445643    67799999999999763   222223 89


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCcccc--CCCCCCccHHHHHH-hhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHH
Q psy4236          94 ALHYGSRYGHKDVVKYIIACAPSSILNM--QDNDKGQTALHKAA-MFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICC  170 (208)
Q Consensus        94 ~l~~a~~~g~~~~~~~ll~~g~~~~~~~--~~~~~~~t~l~~a~-~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~  170 (208)
                      |||+|+..|+.+++++|++.|++  ++.  . +..|.||||+|+ ..|+.+++++|++.+..+.||||.|+..|+.++++
T Consensus       166 pLh~Aa~~G~~eiv~~Ll~~ga~--~~~~~~-d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          166 AFRLAAENGHLHVLNRLCELAPT--EATAMI-QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGG--GHHHHH-HHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCc--cchhcc-CCCCCCHHHHHHHHCCCHHHHHHHHhCCCccchHHHHHHHCCCHHHHH
Confidence            99999999999999999999987  544  4 356899999999 99999999999998778999999999999999999


Q ss_pred             HHHhCCCCCc-------------------------------------------------------------ccCCCCCCH
Q psy4236         171 MLVAGGASLT-------------------------------------------------------------VKDYDSNTP  189 (208)
Q Consensus       171 ~Ll~~g~~~~-------------------------------------------------------------~~~~~g~t~  189 (208)
                      +|+++|++++                                                             .....+.+|
T Consensus       243 lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~  322 (376)
T 2aja_A          243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL  322 (376)
T ss_dssp             HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred             HHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHH
Confidence            9987664321                                                             112345678


Q ss_pred             HHHHHHcCCHHHHHHHhh
Q psy4236         190 RALALLANDTELAAYLEK  207 (208)
Q Consensus       190 l~~a~~~~~~~~~~~L~~  207 (208)
                      +++|+.+|+.+++++|++
T Consensus       323 L~~A~~~g~~e~v~lLl~  340 (376)
T 2aja_A          323 LRLALRLGNQGACALLLS  340 (376)
T ss_dssp             HHHHHHHTCTTHHHHHTT
T ss_pred             HHHHHHcCcHHHHHHHHc
Confidence            999999999999999986

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=4.4e-25  Score=161.47  Aligned_cols=151  Identities=21%  Similarity=0.165  Sum_probs=133.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC-
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH-  103 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~-  103 (208)
                      +.|||+.|+..|+.+++++|+++|++++..+..+.+++.    .+..+++++|+++|++++..+..|.||||+|+..+. 
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~  155 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS  155 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCh
Confidence            678999999999999999999999999999999998864    566899999999999999999999999999997765 


Q ss_pred             HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCC
Q psy4236         104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGG  176 (208)
Q Consensus       104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g  176 (208)
                      .+++++|++.|++  ++..+...|.||||+|+..++.+++++|++.       +..|.||+++|+..|+.+++++|++.|
T Consensus       156 ~~~~~~L~~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          156 VDPTRLLLTFNVS--VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             STTHHHHHHTTCC--TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCC--cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            8999999999998  7776434799999999999999999999965       567899999999999999999999988


Q ss_pred             CCCcc
Q psy4236         177 ASLTV  181 (208)
Q Consensus       177 ~~~~~  181 (208)
                      ++...
T Consensus       234 ~~~~~  238 (240)
T 3eu9_A          234 QAKGY  238 (240)
T ss_dssp             -----
T ss_pred             hccCc
Confidence            87654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=3e-25  Score=157.74  Aligned_cols=122  Identities=21%  Similarity=0.215  Sum_probs=113.6

Q ss_pred             CCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcH
Q psy4236          84 LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTA  156 (208)
Q Consensus        84 ~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~  156 (208)
                      ++.+|..|+||||+|+..|+.+++++|++.|++  ++.. +..|+||||+|+..++.+++++|++.       +..|.||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  104 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK--LEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP  104 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc--cccc-cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            457899999999999999999999999999988  7777 47899999999999999999999954       5679999


Q ss_pred             HHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         157 LHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       157 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  156 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL  156 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999863

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=9.6e-25  Score=144.47  Aligned_cols=115  Identities=30%  Similarity=0.426  Sum_probs=107.7

Q ss_pred             CCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHh
Q psy4236          90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAM  162 (208)
Q Consensus        90 ~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~  162 (208)
                      +|.||||+|+..|+.+++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD--VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC--CCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence            488999999999999999999999988  7776 47899999999999999999999854       5678999999999


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         163 FKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       163 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .|+.+++++|++.|++++..|..|.||+++|+..|+.+++++|++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  122 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE  122 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999986

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=2.1e-25  Score=155.83  Aligned_cols=134  Identities=18%  Similarity=0.140  Sum_probs=108.6

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH  103 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~  103 (208)
                      ..+..+.||||.|+..|+.+++++|+++|+++                             +..|..|.||||+|+..|+
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------------------~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A           31 KPDERGFTPLIWASAFGEIETVRFLLEWGADP-----------------------------HILAKERESALSLASTGGY   81 (172)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-----------------------------TCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-----------------------------hhhcccCCCHHHHHHHCCC
Confidence            34567889999999999999999977666554                             4567788899999999999


Q ss_pred             HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCC
Q psy4236         104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGG  176 (208)
Q Consensus       104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g  176 (208)
                      .+++++|++.|++  ++.. +..|+||||+|+..++.+++++|++.       +..|.||||+|+..|+.+++++|+++|
T Consensus        82 ~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           82 TDIVGLLLERDVD--INIY-DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             HHHHHHHHTTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            9999999998888  7776 47789999999999999999998854       466889999999999999999999999


Q ss_pred             CCCcccCCCCCCH
Q psy4236         177 ASLTVKDYDSNTP  189 (208)
Q Consensus       177 ~~~~~~~~~g~t~  189 (208)
                      +++...+..|.||
T Consensus       159 ~~~~~~~~~~~~p  171 (172)
T 3v30_A          159 LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHSCC-------
T ss_pred             HHHhcccCCCCCC
Confidence            9988888888776

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=3.2e-25  Score=152.60  Aligned_cols=120  Identities=20%  Similarity=0.201  Sum_probs=107.9

Q ss_pred             CcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCc-H
Q psy4236          85 LSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQT-A  156 (208)
Q Consensus        85 ~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t-~  156 (208)
                      +..+..|.||||+|+..|+.+++++|++.|++  ++.. +..|+||||+|+ .++.+++++|++.       +..|.| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN--PNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC--TTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC--CCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            34567899999999999999999999999988  7777 478999999985 8999999999965       456888 9


Q ss_pred             HHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         157 LHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       157 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ||+|+..|+.+++++|+++|++++..|..|.||||+|+.+|+.+++++|+++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~  133 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  133 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999863

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=2.3e-24  Score=142.62  Aligned_cols=119  Identities=29%  Similarity=0.400  Sum_probs=100.3

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHH
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV  107 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~  107 (208)
                      +|.||||.|+..|+.+++++|+++|+++                             +..+..|.||||+|+..++.+++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----------------------------~~~~~~g~t~L~~A~~~~~~~~~   51 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-----------------------------NAKDKNGRTPLHLAARNGHLEVV   51 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-----------------------------TCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-----------------------------CCcCCCCCcHHHHHHHcCcHHHH
Confidence            3779999999999999999977766554                             45677788899999999999999


Q ss_pred             HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCC
Q psy4236         108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS  178 (208)
Q Consensus       108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~  178 (208)
                      ++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.|||++|+..|+.+++++|+++|+|
T Consensus        52 ~~Ll~~g~~--~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           52 KLLLEAGAD--VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHcCCC--Cccc-CCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999988887  6666 46788999999999999999988854       45688999999999999999999998875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=1.7e-24  Score=152.76  Aligned_cols=137  Identities=23%  Similarity=0.281  Sum_probs=93.9

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      ..+.+..+.||||.|+..|+.++++.|++ |+++                             +.+|..|+||||+|+..
T Consensus        37 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-----------------------------~~~d~~g~t~L~~A~~~   86 (183)
T 3deo_A           37 AADVVSEYETPWWTAARKADEQALSQLLE-DRDV-----------------------------DAVDENGRTALLFVAGL   86 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-----------------------------TCCCTTSCCHHHHHHHH
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-----------------------------CCcCCCCCCHHHHHHHc
Confidence            34556788999999999999999999766 5555                             45566677777777777


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHh
Q psy4236         102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVA  174 (208)
Q Consensus       102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~  174 (208)
                      |+.+++++|++.|++  ++..++..|+||||+|+..++.+++++|++.       +..|.||||+|+..++.        
T Consensus        87 ~~~~~v~~Ll~~ga~--~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------  156 (183)
T 3deo_A           87 GSDKCVRLLAEAGAD--LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT--------  156 (183)
T ss_dssp             TCHHHHHHHHHTTCC--TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT--------
T ss_pred             CCHHHHHHHHHcCCC--CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC--------
Confidence            777777777777766  5555335566777777766666666666643       45566777766654322        


Q ss_pred             CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         175 GGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       175 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                               ..+.+|+++|+..|..+++++|.+
T Consensus       157 ---------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          157 ---------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             ---------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             ---------cccccHHHHHHHcCHHHHHHHHHH
Confidence                     234567777777777777777754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=2.7e-24  Score=144.65  Aligned_cols=120  Identities=16%  Similarity=0.142  Sum_probs=70.4

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccc---hHHHHHHHHHHcCCCCCcCCCC-CccHHHHHHh
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN---HFFFQLKDLHSQGYSLLSIDSV-GQTALHYGSR  100 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~d~~-g~t~l~~a~~  100 (208)
                      .+..+.||||.|+..|+.+++++|+++|++++..+..+.+|++.   +..+++++|+++|++++.+|.. |.||||+|+.
T Consensus         8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~   87 (136)
T 1d9s_A            8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (136)
T ss_dssp             CCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTTSCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHH
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHH
Confidence            35668899999999999999999888887776655555544321   3445555555555555555555 5555555555


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL  147 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  147 (208)
                      .|+.+++++|++.|++  ++.. +..|.||||+|+..++.+++++|+
T Consensus        88 ~~~~~~v~~Ll~~ga~--~~~~-d~~g~tpl~~A~~~~~~~~~~~Ll  131 (136)
T 1d9s_A           88 EGFLDTLVVLHRAGAR--LDVC-DAWGRLPVDLAEEQGHRDIARYLH  131 (136)
T ss_dssp             HTCHHHHHHHHHTCCC--CCCC-SSSSSCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC--CCcc-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5555555555555544  4433 233444444444444444444333

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=5e-25  Score=160.91  Aligned_cols=143  Identities=19%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             HHHHHcCCCCcccCCCCCCCc-------cchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCc
Q psy4236          46 KDLHSQGYSLKKIPPKDDHPN-------LNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSI  118 (208)
Q Consensus        46 ~~Li~~g~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~  118 (208)
                      +.|+++|++++..+..+.++.       ..+..+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++  
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~--   79 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN--   79 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--
Confidence            455666666555444333321       12334455555555555555555555555555555555555555555544  


Q ss_pred             cccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHH--HhhCCHHHHHHHHhCCCCCcccCCCCCC
Q psy4236         119 LNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKA--AMFKRRSICCMLVAGGASLTVKDYDSNT  188 (208)
Q Consensus       119 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A--~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  188 (208)
                      ++.. +..|+||||+|+..|+.+++++|++.        +..|.||||+|  +..|+.+++++|++.|++++..|..|.+
T Consensus        80 ~n~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  158 (229)
T 2vge_A           80 VNSP-DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY  158 (229)
T ss_dssp             TTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred             CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence            4444 23455555555555555555555432        12444555555  4455555555555555555555544444


Q ss_pred             HHH
Q psy4236         189 PRA  191 (208)
Q Consensus       189 ~l~  191 (208)
                      |++
T Consensus       159 ~l~  161 (229)
T 2vge_A          159 ALW  161 (229)
T ss_dssp             ESS
T ss_pred             HHH
Confidence            444

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=2.6e-24  Score=158.63  Aligned_cols=141  Identities=18%  Similarity=0.168  Sum_probs=93.2

Q ss_pred             HHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCC-CCCccHHHH
Q psy4236          23 INILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSID-SVGQTALHY   97 (208)
Q Consensus        23 ~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d-~~g~t~l~~   97 (208)
                      .+.+..|.||||.|++.|+.++++.|++ |++++..+..|.+|++    .+..+++++|+++|++++.++ ..|.||||+
T Consensus        39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           39 ADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHH
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            4556788999999999999999999888 7777776666666653    344566666666666666665 556666666


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHhCCC
Q psy4236          98 GSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGA  177 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~  177 (208)
                      |+..|+.+++++|++.|++  ++.. +..|.||||+|+..+          ....+.+||++|+..|+.+++++|++.+.
T Consensus       118 A~~~g~~~~v~~Ll~~ga~--~~~~-d~~g~t~l~~A~~~~----------~~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGAD--IEVE-DERGLTALELAREIL----------KTTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCC--TTCC-CTTCCCHHHHHHHHH----------TTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHcCCHHHHHHHHHCCCC--CCCC-CCCCCcHHHHHHHHH----------hccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            6666666666666666665  5555 355666666665421          23445666666666666666666665433

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.92  E-value=3e-24  Score=148.38  Aligned_cols=122  Identities=19%  Similarity=0.276  Sum_probs=102.9

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH  103 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~  103 (208)
                      ..+..+.||||.|+. |+.+++++|+++|+++                             +.+|..|.||||+|+..|+
T Consensus        33 ~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-----------------------------~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A           33 AQNGFGRTALQVMKL-GNPEIARRLLLRGANP-----------------------------DLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-----------------------------TCCCTTSCCHHHHHHHHTC
T ss_pred             ccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-----------------------------CCCCCCCCCHHHHHHHcCC
Confidence            345668899999999 9999999977666554                             5577788999999999999


Q ss_pred             HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCCHHHHHHHHhC
Q psy4236         104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSICCMLVAG  175 (208)
Q Consensus       104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~~~~~~~Ll~~  175 (208)
                      .+++++|++.|++  ++.. +..|+||||+|+..++.+++++|++.        +..|.||||+|+..|+.+++++|+++
T Consensus        83 ~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           83 LDTLQTLLEFQAD--VNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             HHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCC--CCCc-CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999988  7777 47899999999999999999999854        34688999999999999999999999


Q ss_pred             CCC
Q psy4236         176 GAS  178 (208)
Q Consensus       176 g~~  178 (208)
                      |+|
T Consensus       160 GAd  162 (162)
T 1ihb_A          160 GAG  162 (162)
T ss_dssp             C--
T ss_pred             CCC
Confidence            986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=6.4e-24  Score=147.55  Aligned_cols=115  Identities=20%  Similarity=0.183  Sum_probs=108.0

Q ss_pred             CCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHh
Q psy4236          90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAM  162 (208)
Q Consensus        90 ~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~  162 (208)
                      .|.||||.|+..|+.+++++|++.+++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV--INHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC--cCCC-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            578999999999999999999999987  7777 47899999999999999999999965       5678899999999


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         163 FKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       163 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      .|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|++
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  123 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE  123 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999986

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=6.9e-24  Score=149.08  Aligned_cols=130  Identities=19%  Similarity=0.241  Sum_probs=111.8

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK  104 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~  104 (208)
                      .+..+.||||.|+..|+.+++++|+++|+++                             +.+|..|.||||+|+..|+.
T Consensus        35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------------------~~~~~~g~t~L~~A~~~~~~   85 (179)
T 3f6q_A           35 GDDHGFSPLHWACREGRSAVVEMLIMRGARI-----------------------------NVMNRGDDTPLHLAASHGHR   85 (179)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------------------TCCCTTCCCHHHHHHHTTCH
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-----------------------------CCcCCCCCCHHHHHHHcCCH
Confidence            4556789999999999999999977666554                             45777888999999999999


Q ss_pred             HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCC
Q psy4236         105 DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGA  177 (208)
Q Consensus       105 ~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~  177 (208)
                      +++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||+++|+..++.+++++|++.|+
T Consensus        86 ~~v~~Ll~~g~~--~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A           86 DIVQKLLQYKAD--INAV-NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             HHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCC--CCcc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999988  7777 47889999999999999999999854       5678999999999999999999999999


Q ss_pred             CCcccCCCC
Q psy4236         178 SLTVKDYDS  186 (208)
Q Consensus       178 ~~~~~~~~g  186 (208)
                      +++..+..+
T Consensus       163 ~~~~~~~~~  171 (179)
T 3f6q_A          163 NLNRIPYKD  171 (179)
T ss_dssp             CCSCBCCCC
T ss_pred             CcccCCccc
Confidence            999877654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=1.8e-23  Score=145.71  Aligned_cols=118  Identities=29%  Similarity=0.343  Sum_probs=108.5

Q ss_pred             CCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHH
Q psy4236          88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKA  160 (208)
Q Consensus        88 d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A  160 (208)
                      ...+.++|+.|+..|+.+++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGAD--VNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            34677999999999999999999999988  7777 47899999999999999999999965       45689999999


Q ss_pred             HhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         161 AMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       161 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      +..|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|+++
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  135 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN  135 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999863

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=9.3e-25  Score=160.46  Aligned_cols=143  Identities=19%  Similarity=0.238  Sum_probs=113.4

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH  103 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~  103 (208)
                      +....+.||||.|+..|+.+++++|+++|++                             ++.+|..|.||||+|+..|+
T Consensus        32 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----------------------------~~~~d~~g~t~L~~A~~~g~   82 (239)
T 1ycs_B           32 KFNPLPLALLLDSSLEGEFDLVQRIIYEVDD-----------------------------PSLPNDEGITALHNAVCAGH   82 (239)
T ss_dssp             -----CHHHHHHHHHHTCHHHHHHHTSTTSS-----------------------------CCCCCTTSCCHHHHHHHHTC
T ss_pred             ccCchhhHHHHHHHHcCCHHHHHHHHHcCCC-----------------------------CCCcCCCCCCHHHHHHHcCC
Confidence            3446678999999999999999997665554                             45677888899999999999


Q ss_pred             HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcC-------CCCC-cHHHHH--HhhCCHHHHHHHH
Q psy4236         104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS-------SRGQ-TALHKA--AMFKRRSICCMLV  173 (208)
Q Consensus       104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-------~~~~-t~l~~A--~~~~~~~~~~~Ll  173 (208)
                      .+++++|++.|++  ++.. +..|+||||+|+..++.+++++|++.+       ..+. ||+|+|  +..|+.+++++|+
T Consensus        83 ~~~v~~Ll~~ga~--~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll  159 (239)
T 1ycs_B           83 TEIVKFLVQFGVN--VNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  159 (239)
T ss_dssp             HHHHHHHHHHTCC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             HHHHHHHHHcCCC--CCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence            9999999999888  7777 467899999999999999999988652       3344 999998  7788899999999


Q ss_pred             hCCCCCccc---------CCCCCCHHHHHHHcCC
Q psy4236         174 AGGASLTVK---------DYDSNTPRALALLAND  198 (208)
Q Consensus       174 ~~g~~~~~~---------~~~g~t~l~~a~~~~~  198 (208)
                      +.|++++..         +..+.++.+++...|.
T Consensus       160 ~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          160 GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            998888765         5557777777766664

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=8.3e-24  Score=139.80  Aligned_cols=111  Identities=24%  Similarity=0.205  Sum_probs=97.7

Q ss_pred             CCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHH
Q psy4236          88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKA  160 (208)
Q Consensus        88 d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A  160 (208)
                      +..|.||||+|+..|+.+++++|++.|++  ++.. +..|+||||+|+..++.+++++|++.       +..|.||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED--VNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC--TTSC-CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC--cCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            45688999999999999999999999988  7777 47899999999999999999999954       56799999999


Q ss_pred             HhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q psy4236         161 AMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAY  204 (208)
Q Consensus       161 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  204 (208)
                      +..|+.+++++|+++|++++..|..|.||+++|.   ..++.++
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~~l  121 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD---NQAIKAL  121 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC---CHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC---CHHHHHH
Confidence            9999999999999999999999999999999994   4444443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=159.52  Aligned_cols=138  Identities=19%  Similarity=0.194  Sum_probs=100.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc---CCHHH
Q psy4236          30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY---GHKDV  106 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~---g~~~~  106 (208)
                      .++|+.|+..|+.+.++.|++.|++++.....                       ...+..|.||||+|+..   |+.++
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~-----------------------~~~~~~g~t~Lh~A~~~~~~~~~~i  208 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPG-----------------------PDAQAPEELVLHLAVKVANQASLPL  208 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEEC-----------------------SSSCSCEECHHHHHHHTCCTTTHHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCC-----------------------cccCCCCccHHHHHHHhcccCcHHH
Confidence            35799999999999999988888877652100                       01466788888888876   77888


Q ss_pred             HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCC
Q psy4236         107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL  179 (208)
Q Consensus       107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~  179 (208)
                      +++|++.|++  ++.. +..|+||||+|+..|+.+++++|++.       +..|.||||+|+..|+.+++++|++.|++ 
T Consensus       209 v~~Ll~~gad--vn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-  284 (301)
T 2b0o_E          209 VDFIIQNGGH--LDAK-AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-  284 (301)
T ss_dssp             HHHHHHHSSC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred             HHHHHhcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-
Confidence            8888888877  7766 36788888888888888888888754       45678888888888888888888887765 


Q ss_pred             cccCCCCCCHHHHHHHcCCH
Q psy4236         180 TVKDYDSNTPRALALLANDT  199 (208)
Q Consensus       180 ~~~~~~g~t~l~~a~~~~~~  199 (208)
                           .|.||||+|+.+|+.
T Consensus       285 -----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 -----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             -----TTSSCCC--------
T ss_pred             -----CCCChhHHHHhcCCc
Confidence                 467888888887753

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.90  E-value=4e-23  Score=141.55  Aligned_cols=115  Identities=20%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD  105 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~  105 (208)
                      +..+.||||.|+..|+.+++++|+++|++++..                             +..|.||||+|+..|+.+
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-----------------------------~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-----------------------------TKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-----------------------------CTTCCCHHHHHHHHTCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-----------------------------CCCCCCHHHHHHHcChHH
Confidence            456889999999999999999988777766554                             445555555555555555


Q ss_pred             HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHH
Q psy4236         106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCML  172 (208)
Q Consensus       106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~L  172 (208)
                      ++++|++.|++  ++.. +..|+||||+|+..++.+++++|++.       +..|.||+|+|+..|+.+++++|
T Consensus        82 ~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           82 IVEVLLKHGAD--VNAK-DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            55555555555  4444 24455555555555555555555532       33455555555555555555554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.90  E-value=5.5e-23  Score=142.52  Aligned_cols=120  Identities=23%  Similarity=0.232  Sum_probs=106.4

Q ss_pred             CCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHH
Q psy4236          87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHK  159 (208)
Q Consensus        87 ~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~  159 (208)
                      .+..+.+|||.|+..|+.+++++|++.+.. .+... +..|.||||+|+..++.+++++|++.       +..|.||||+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV-NCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTT-TCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCC-Ccccc-ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence            456788999999999999999999986542 14444 46789999999999999999999964       5678999999


Q ss_pred             HHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         160 AAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       160 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      |+..|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|+++
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  130 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH  130 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999863

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.5e-23  Score=152.31  Aligned_cols=118  Identities=22%  Similarity=0.182  Sum_probs=106.5

Q ss_pred             CCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHH
Q psy4236          87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALH  158 (208)
Q Consensus        87 ~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~  158 (208)
                      .+..|.||||+|+..|+.+++++|++.|++  ++.. +..|+||||+|+..|+.+++++|++.        +..|.||||
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG--VNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCC--cccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            456789999999999999999999999988  7777 47899999999999999999999965        567999999


Q ss_pred             HHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         159 KAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       159 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +|+..|+.+++++|++.|++++..|..|.||+++|+..+..++++.|++
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~  194 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQG  194 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999988764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=3.1e-23  Score=150.59  Aligned_cols=134  Identities=25%  Similarity=0.271  Sum_probs=97.2

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      +...+..+.||||.|+..|+.+++++|+++|+++                             +.+|..|.||||+|+..
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------------~~~~~~g~t~L~~A~~~  116 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-----------------------------NGLDKAGSTALYWACHG  116 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-----------------------------TCCCTTSCCHHHHHHHT
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCc-----------------------------cccCCCCCCHHHHHHHc
Confidence            4455667889999999999999999976665554                             55677888999999999


Q ss_pred             CCHHHHHHHHHc-CCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236         102 GHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV  173 (208)
Q Consensus       102 g~~~~~~~ll~~-g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll  173 (208)
                      |+.+++++|++. |++  ++.. +..|+||||+|+..|+.+++++|++.       +..|.||||+|+..+..++++.|+
T Consensus       117 ~~~~~v~~Ll~~~g~~--~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~  193 (222)
T 3ehr_A          117 GHKDIVEMLFTQPNIE--LNQQ-NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ  193 (222)
T ss_dssp             TCHHHHHHHTTSTTCC--CCCC-CTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---
T ss_pred             CCHHHHHHHHcCCCCC--cccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHh
Confidence            999999999888 777  7777 47788999999999999999888854       567889999999999999999999


Q ss_pred             hCCCCCcccCCCCC
Q psy4236         174 AGGASLTVKDYDSN  187 (208)
Q Consensus       174 ~~g~~~~~~~~~g~  187 (208)
                      ..|++....+..++
T Consensus       194 ~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          194 GTDAVRTLSNAEDY  207 (222)
T ss_dssp             --------------
T ss_pred             ccchhhhccchhhh
Confidence            99988887776553

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.89  E-value=2.2e-22  Score=138.18  Aligned_cols=115  Identities=23%  Similarity=0.251  Sum_probs=104.1

Q ss_pred             CccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhh
Q psy4236          91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMF  163 (208)
Q Consensus        91 g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~  163 (208)
                      +.+|||.|+..|+.+++++|++. ....++.. +..|.||||+ +..|+.+++++|++.       +..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            46899999999999999999998 32226666 4789999999 999999999999965       46789999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         164 KRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       164 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      |+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|++.
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999863

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=2.9e-21  Score=144.82  Aligned_cols=181  Identities=15%  Similarity=0.077  Sum_probs=130.7

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHH--HHHHHHcCCC-CCcCCCCCccHHHHHHhc
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQ--LKDLHSQGYS-LLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~-~~~~d~~g~t~l~~a~~~  101 (208)
                      .+..+.+.++.+...|+...-+++-..-.......+.... ......+.  .+++...-.. ....+....++|+.|+..
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s-~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~  140 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGS-DMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT  140 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTC-CHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCC-CHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence            4555677899999888887666543322222111111111 11111222  2233222111 111122345789999999


Q ss_pred             CCHHHHHHHHHcCCCCc----cccCCCCCCccHHHHHHhh---CcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHH
Q psy4236         102 GHKDVVKYIIACAPSSI----LNMQDNDKGQTALHKAAMF---KRRSICWMFLFF-------SSRGQTALHKAAMFKRRS  167 (208)
Q Consensus       102 g~~~~~~~ll~~g~~~~----~~~~~~~~~~t~l~~a~~~---~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~  167 (208)
                      |+.+.++.+++.|++..    ++.. +..|.||||+|+..   ++.+++++|++.       +..|.||||+|+..|+.+
T Consensus       141 ~d~~~~~~ll~~g~~~~~~~~l~~~-~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~  219 (278)
T 1dcq_A          141 RDIFGLLQAYADGVDLTEKIPLANG-HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE  219 (278)
T ss_dssp             TCHHHHHHHHHTTCCTTSBCCCSSC-SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             cccHHHHHHHHhhcchhhhcccccc-ccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHH
Confidence            99999999999998733    2222 36799999999999   899999999954       567999999999999999


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         168 ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       168 ~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus       220 ~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  259 (278)
T 1dcq_A          220 CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ  259 (278)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999985

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.88  E-value=1.3e-24  Score=169.05  Aligned_cols=162  Identities=14%  Similarity=0.074  Sum_probs=127.3

Q ss_pred             hHHHHHHHH-hCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCC---CcCCCCCccHHHHHHhc
Q psy4236          30 SEGVLKAAR-VGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSL---LSIDSVGQTALHYGSRY  101 (208)
Q Consensus        30 ~~~l~~A~~-~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~---~~~d~~g~t~l~~a~~~  101 (208)
                      .++++.|.. .++.+.+++|+++|.+..       +|++    .+..+++++|+++|+..   +..+..|.||||+|+..
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~g~~~~-------T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~  138 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKKGIKSE-------VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN  138 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHTCCHH-------HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCCcC-------CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence            457777776 588999999999987754       5543    56789999999998833   23445678999999999


Q ss_pred             CCHHHHHHHHHcCCCCcc-ccCCCCCCccHHHHHHhhCcHHHHHHHHhcCC---------CCCcHHHHHH-hhCCHHHHH
Q psy4236         102 GHKDVVKYIIACAPSSIL-NMQDNDKGQTALHKAAMFKRRSICWMFLFFSS---------RGQTALHKAA-MFKRRSICC  170 (208)
Q Consensus       102 g~~~~~~~ll~~g~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~---------~~~t~l~~A~-~~~~~~~~~  170 (208)
                      |+.+++++|++.|++... +.. .. +.||||+|+..|+.+++++|++.+.         .|.||||+|+ ..|+.++++
T Consensus       139 G~~eiv~~Ll~~gad~~~~~i~-~~-~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          139 GHLHVLNRLCELAPTEIMAMIQ-AE-NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             TCHHHHHHHHHSCTTTHHHHHS-HH-HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             CCHHHHHHHHhCCCCccccccC-CC-CCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            999999999999975211 111 12 2899999999999999999996543         3789999999 999999999


Q ss_pred             HHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         171 MLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       171 ~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +|++.|++       |.||+++|+.+|+.+++++|++
T Consensus       217 ~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~  246 (376)
T 2aja_A          217 FLLDCPVM-------LAYAEIHEFEYGEKYVNPFIAR  246 (376)
T ss_dssp             HHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHH
T ss_pred             HHHhCCCc-------cchHHHHHHHCCCHHHHHHHHh
Confidence            99997743       7899999999999999999975

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=5.6e-23  Score=138.25  Aligned_cols=116  Identities=17%  Similarity=0.118  Sum_probs=66.1

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      .+..|.||||.|+..|+.+++++|+++|++++..+..+.++++    .+..+++++|+++|++++.+|..|.||||+|+.
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence            3567889999999999999999988877776655444444432    233444444444444444444444444444444


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHH
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC  143 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  143 (208)
                      .|+.+++++|++.|++  ++.. +..|.||+++|+..+..+++
T Consensus        86 ~~~~~~v~~Ll~~ga~--~~~~-~~~g~tpl~~A~~~~~~~~l  125 (137)
T 3c5r_A           86 NGHVDIVKLLLSYGAS--RNAV-NIFGLRPVDYTDDESMKSLL  125 (137)
T ss_dssp             TTCHHHHHHHHHTTCC--TTCC-CTTSCCGGGGCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC--CCCC-CCCCCCHHHHHhhccHHHHH
Confidence            4444444444444444  3333 23444444444444333333

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=2.5e-22  Score=132.68  Aligned_cols=106  Identities=19%  Similarity=0.184  Sum_probs=62.1

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      ...+.++||.|+..|+.+++++|+++|++++..+..+.++++    .+..+++++|+++|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            345779999999999999999988887777665555544432    2334455555555555555555555555555555


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCCCccHHHHH
Q psy4236         102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKA  134 (208)
Q Consensus       102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a  134 (208)
                      |+.+++++|++.|++  ++.. +..|.||+++|
T Consensus        84 ~~~~~v~~Ll~~ga~--~~~~-~~~g~t~l~~A  113 (123)
T 3aaa_C           84 GHVSCVKLLLSKGAD--KTVK-GPDGLTAFEAT  113 (123)
T ss_dssp             TCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHC
T ss_pred             CCHHHHHHHHHcCCC--CCCc-CCCCCCHHHHh
Confidence            555555555555544  4333 24445555554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=1.4e-20  Score=142.58  Aligned_cols=173  Identities=14%  Similarity=0.110  Sum_probs=127.5

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCc-ccCCCCCCCccchHHHHHHH-HHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLK-KIPPKDDHPNLNHFFFQLKD-LHSQGYSLLSIDSVGQTALHYGSRYGHKDV  106 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~-~~~~~~~~~~~~~~~~~~~~-l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~  106 (208)
                      ..+.+..+...|+. .++.+.+...... ...+..... .......++. .....  .........++|+.|+..|+.+.
T Consensus        91 ~~~~l~~~~~~GN~-~~n~i~E~~l~~~~~~kP~~~s~-~~~r~~~I~~Ky~~~~--f~~~~~~~~~~L~~A~~~g~~~~  166 (301)
T 2b0o_E           91 GPSELLLALNMGNT-SFNEVMEAQLPSHGGPKPSAESD-MGTRRDYIMAKYVEHR--FARRCTPEPQRLWTAICNRDLLS  166 (301)
T ss_dssp             CHHHHHHHHHCCHH-HHHHHHTTTCCSSSCSCCCTTCC-HHHHHHHHHHHHTSCT--TSCCCC-CHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHcCCH-HHHHHHHHhhhhccCCCCCCccc-HHHHHHHHHHHHHhhh--hhcccCchHHHHhhhhhccCHHH
Confidence            44577777777765 6666677655432 111111111 1111122111 11111  12222335578999999999999


Q ss_pred             HHHHHHcCCCCccccC-----CCCCCccHHHHHHhh---CcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHH
Q psy4236         107 VKYIIACAPSSILNMQ-----DNDKGQTALHKAAMF---KRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCM  171 (208)
Q Consensus       107 ~~~ll~~g~~~~~~~~-----~~~~~~t~l~~a~~~---~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~  171 (208)
                      ++.+++.|++  ++..     .+..|.||||+|+..   ++.+++++|++.       +..|.||||+|+..|+.+++++
T Consensus       167 v~~ll~~g~d--~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~  244 (301)
T 2b0o_E          167 VLEAFANGQD--FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL  244 (301)
T ss_dssp             HHHHHHTTCC--TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhcCCc--ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999988  6551     246799999999997   899999999954       5679999999999999999999


Q ss_pred             HHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         172 LVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       172 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      |+++|++++.+|..|.|||++|+..|+.+++++|++
T Consensus       245 Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~  280 (301)
T 2b0o_E          245 LLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ  280 (301)
T ss_dssp             HHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999985

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=5.9e-23  Score=144.88  Aligned_cols=110  Identities=24%  Similarity=0.196  Sum_probs=99.9

Q ss_pred             CCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------C-CCCCcHHHH
Q psy4236          88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------S-SRGQTALHK  159 (208)
Q Consensus        88 d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~-~~~~t~l~~  159 (208)
                      +..|.||||+|+..|+.+++++|++ |++  ++.. +..|+||||+|+..|+.+++++|++.       + ..|.||||+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD--VDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC--CCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            4578999999999999999999999 877  7777 47899999999999999999999954       3 678999999


Q ss_pred             HHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHH
Q psy4236         160 AAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTEL  201 (208)
Q Consensus       160 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  201 (208)
                      |+..|+.+++++|+++|++++.+|..|.||+|+|+..++.+.
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~  158 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP  158 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCC
T ss_pred             HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcc
Confidence            999999999999999999999999999999999998765443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=1.7e-21  Score=151.17  Aligned_cols=136  Identities=15%  Similarity=0.177  Sum_probs=90.1

Q ss_pred             chHHHHHHHHh-CCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCC--CCCccHHHHHHhcCCHH
Q psy4236          29 TSEGVLKAARV-GDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSID--SVGQTALHYGSRYGHKD  105 (208)
Q Consensus        29 ~~~~l~~A~~~-g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d--~~g~t~l~~a~~~g~~~  105 (208)
                      +.++||.|+.. |+.++++.|+++|++++                             ..+  ..|.||||+|+..|+.+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-----------------------------~~~~~~~g~TpLh~Aa~~g~~~  249 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVN-----------------------------WVNGGQDNATPLIQATAANSLL  249 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTT-----------------------------CCCTTTTCCCHHHHHHHTTCHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCC-----------------------------ccccccCCCCHHHHHHHCCCHH
Confidence            45689999998 99999999777666654                             344  67889999999999999


Q ss_pred             HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCC--
Q psy4236         106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGG--  176 (208)
Q Consensus       106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g--  176 (208)
                      ++++|++.|++  ++.. +..|+||||+|+..++.+++++|++.       +..|.||||+|+..++.+++++|+..+  
T Consensus       250 iv~~LL~~Gad--vn~~-d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          250 ACEFLLQNGAN--VNQA-DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCC--CCCC-CCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999988  7776 36788888888887777777777743       455777777777777777777777644  


Q ss_pred             -CCCcccCCCCCCHHHHHHHc
Q psy4236         177 -ASLTVKDYDSNTPRALALLA  196 (208)
Q Consensus       177 -~~~~~~~~~g~t~l~~a~~~  196 (208)
                       .+....+..+.|+++.+...
T Consensus       327 ~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          327 EAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             ---------------------
T ss_pred             cccccccCCCCCCHHHHHHHH
Confidence             33334445556666655443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.87  E-value=2.2e-22  Score=142.32  Aligned_cols=119  Identities=14%  Similarity=0.009  Sum_probs=91.6

Q ss_pred             hhchHHHHHHHHhCCH----HHHHHHHHcCCCCcccCCCCCCCccch----------HHHHHHHHHHcCCCCCcCCCCCc
Q psy4236          27 EKTSEGVLKAARVGDI----KMLKDLHSQGYSLKKIPPKDDHPNLNH----------FFFQLKDLHSQGYSLLSIDSVGQ   92 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~----~~~~~Li~~g~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~g~~~~~~d~~g~   92 (208)
                      ..|.||||.|+..|+.    +++++|+++|+++|.++..|.+|++..          ..+++++|+++|++++.+|..|.
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            5688999999999985    489999888888888888888886521          25678888888888888888888


Q ss_pred             -cHHHHHHhcCC-----HHHHHHHHH-cCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh
Q psy4236          93 -TALHYGSRYGH-----KDVVKYIIA-CAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF  148 (208)
Q Consensus        93 -t~l~~a~~~g~-----~~~~~~ll~-~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~  148 (208)
                       ||||+|+..+.     .+++++|++ .|++  ++.+ +..|+||||+|+..++.+++++|.+
T Consensus       116 ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad--~~~~-d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ--LLIK-DKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             BCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC--TTCC-CTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             chHHHHHHHcCCChhhHHHHHHHHHHhcCCC--Cccc-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence             88888877443     457788887 7877  6666 4677788888877777777777663

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=7.4e-21  Score=119.38  Aligned_cols=90  Identities=32%  Similarity=0.485  Sum_probs=71.1

Q ss_pred             CCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHH
Q psy4236          90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSIC  169 (208)
Q Consensus        90 ~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~  169 (208)
                      .|+||||+|+..|+.+++++|++.|++  ++.++ ..                          |.||||+|+..|+.+++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~n~~d-~~--------------------------g~t~L~~A~~~~~~~~v   51 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKD-KN--------------------------GRTPLHLAARNGHLEVV   51 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC--TTCCC-TT--------------------------SCCHHHHHHHTTCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC--CcccC-CC--------------------------CCCHHHHHHHcCCHHHH
Confidence            378899999999999999999998887  65552 34                          45555566666777788


Q ss_pred             HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         170 CMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       170 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ++|++.|++++.+|..|.||+|+|+..|+.+++++|+++
T Consensus        52 ~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~   90 (93)
T 1n0q_A           52 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA   90 (93)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            888888899999998999999999999999999988763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=1.9e-20  Score=140.38  Aligned_cols=125  Identities=22%  Similarity=0.230  Sum_probs=107.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc---CCHHH
Q psy4236          30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY---GHKDV  106 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~---g~~~~  106 (208)
                      .++|+.|+..|+.+.++.+++.|++++...                       .++..|..|.||||+|+..   |+.++
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~-----------------------~l~~~~~~g~t~Lh~A~~~~~~~~~~~  187 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKI-----------------------PLANGHEPDETALHLAVRSVDRTSLHI  187 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBC-----------------------CCSSCSSTTCBHHHHHHHHCCTTTHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhc-----------------------cccccccCCCCcchHHHHhcccchHHH
Confidence            358999999999999999999998875421                       1345577899999999999   89999


Q ss_pred             HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCC
Q psy4236         107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL  179 (208)
Q Consensus       107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~  179 (208)
                      +++|++.|++  ++.+ +..|+||||+|+..|+.+++++|++.       +..|.||||+|+..|+.+++++|+++|++.
T Consensus       188 v~~Ll~~ga~--in~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          188 VDFLVQNSGN--LDKQ-TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHCSC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCC--cccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999998  8877 47899999999999999999999954       567999999999999999999999988864


Q ss_pred             c
Q psy4236         180 T  180 (208)
Q Consensus       180 ~  180 (208)
                      .
T Consensus       265 ~  265 (278)
T 1dcq_A          265 F  265 (278)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=1.8e-20  Score=117.57  Aligned_cols=90  Identities=29%  Similarity=0.404  Sum_probs=72.1

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHH
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV  107 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~  107 (208)
                      .|.||||.|+..|+.+++++|+++|+                             +++.+|..|+||||+|+..|+.+++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~-----------------------------~~n~~d~~g~t~L~~A~~~~~~~~v   51 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-----------------------------DVNAKDKNGRTPLHLAARNGHLEVV   51 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTC-----------------------------CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC-----------------------------CCcccCCCCCCHHHHHHHcCCHHHH
Confidence            36799999999999999999766555                             4456788899999999999999999


Q ss_pred             HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc
Q psy4236         108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF  149 (208)
Q Consensus       108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  149 (208)
                      ++|++.|++  ++.+ +..|+||||+|+..++.+++++|++.
T Consensus        52 ~~Ll~~ga~--~~~~-d~~g~t~l~~A~~~~~~~~~~~Ll~~   90 (93)
T 1n0q_A           52 KLLLEAGAD--VNAK-DKNGRTPLHLAARNGHLEVVKLLLEA   90 (93)
T ss_dssp             HHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHcCCC--CCcc-CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            999999988  7766 36677777777777776666666554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=5.3e-21  Score=140.84  Aligned_cols=115  Identities=23%  Similarity=0.215  Sum_probs=98.9

Q ss_pred             CCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------C-CCCCcHHHHH
Q psy4236          89 SVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------S-SRGQTALHKA  160 (208)
Q Consensus        89 ~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~-~~~~t~l~~A  160 (208)
                      ..|.||||+|+..|+.+++++|++ |++  ++.. +..|+||||+|+..|+.+++++|++.       + ..|.||||+|
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRD--VDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCC--TTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCC--CCCc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            467899999999999999999998 777  7777 47799999999999999999999854       3 5688999999


Q ss_pred             HhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHH----------------HcCCHHHHHHHhh
Q psy4236         161 AMFKRRSICCMLVAGGASLTVKDYDSNTPRALAL----------------LANDTELAAYLEK  207 (208)
Q Consensus       161 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~----------------~~~~~~~~~~L~~  207 (208)
                      +..|+.+++++|+++|++++..|..|.||+|+|+                ..|+.+++++|.+
T Consensus       119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHH
Confidence            9999999999999999999999999998888887                6688889988864

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.85  E-value=1.1e-19  Score=146.57  Aligned_cols=116  Identities=18%  Similarity=0.142  Sum_probs=105.2

Q ss_pred             CccHHHHHHhcCCHHHHHHHHHcCCCCccccC-----CCCCCccHHHHHHh---hCcHHHHHHHHhc-------CCCCCc
Q psy4236          91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQ-----DNDKGQTALHKAAM---FKRRSICWMFLFF-------SSRGQT  155 (208)
Q Consensus        91 g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~-----~~~~~~t~l~~a~~---~~~~~~~~~l~~~-------~~~~~t  155 (208)
                      ..+.||.|+..|+.+.++.|++.|++  ++..     .+..|.||||+|+.   .|+.+++++|++.       +..|+|
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~g~~--~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~T  209 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFANGQD--FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT  209 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHTTCC--SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCC
T ss_pred             cHHHHHHHHhccCHHHHHHHHhhccc--ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCc
Confidence            44789999999999999999999988  5543     13679999999976   8999999999954       577999


Q ss_pred             HHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         156 ALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       156 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      |||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++
T Consensus       210 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  262 (497)
T 3lvq_E          210 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA  262 (497)
T ss_dssp             HHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999863

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=8.2e-21  Score=123.80  Aligned_cols=102  Identities=27%  Similarity=0.337  Sum_probs=91.9

Q ss_pred             cCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHH
Q psy4236          86 SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALH  158 (208)
Q Consensus        86 ~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~  158 (208)
                      .+|..|.||||+|+..|+.+++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD--VNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC--SSCC-CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCCc-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            5788999999999999999999999999988  7777 47899999999999999999999854       567999999


Q ss_pred             HHHhhCCHHHHHHHHhCCCCCcccCCCCCCHH
Q psy4236         159 KAAMFKRRSICCMLVAGGASLTVKDYDSNTPR  190 (208)
Q Consensus       159 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  190 (208)
                      +|+..++.+++++|+++|++++..+..|.+|-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999999998875

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=1.3e-18  Score=112.51  Aligned_cols=92  Identities=24%  Similarity=0.288  Sum_probs=75.5

Q ss_pred             CcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhC
Q psy4236          85 LSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFK  164 (208)
Q Consensus        85 ~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~  164 (208)
                      ...|..|.||||+|+..|+.+++++|++.|++  ++..+ ..                          |.||||+|+..|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--i~~~d-~~--------------------------g~tpLh~A~~~~   68 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD--VAAKD-KN--------------------------GSTPLHLAARNG   68 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCC-TT--------------------------CCCHHHHHHHTT
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCC--CCccC-CC--------------------------CCCHHHHHHHcC
Confidence            45677899999999999999999999999877  65542 33                          555666666777


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Q psy4236         165 RRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL  205 (208)
Q Consensus       165 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  205 (208)
                      +.+++++|+++|++++..|..|.||+|+|+.+|+.+++++|
T Consensus        69 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           69 HLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            78888899999999999999999999999999999999987

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=3.3e-19  Score=116.11  Aligned_cols=91  Identities=22%  Similarity=0.261  Sum_probs=55.8

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY  101 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~  101 (208)
                      +..|.||||.|+..|+.+++++|+++|++++..+..+.++++    .+..+++++|+++|++++.+|..|.||||+|+..
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~   85 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKN   85 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHC
Confidence            567889999999999999999988877776655544444432    2234444444444444444444444444444444


Q ss_pred             CCHHHHHHHHHcCCC
Q psy4236         102 GHKDVVKYIIACAPS  116 (208)
Q Consensus       102 g~~~~~~~ll~~g~~  116 (208)
                      |+.+++++|++.|++
T Consensus        86 ~~~~~~~~Ll~~ga~  100 (115)
T 2l6b_A           86 GHHEIVKLLDAKGAD  100 (115)
T ss_dssp             TCHHHHHHHHTTSSS
T ss_pred             CCHHHHHHHHHcCCC
Confidence            444444444444444

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=3.8e-18  Score=110.31  Aligned_cols=94  Identities=23%  Similarity=0.331  Sum_probs=78.4

Q ss_pred             hHHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          21 DIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      ...+.+.++.++||.|+..|+.+++++|+++|++                             ++.+|..|.||||+|+.
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------------------------i~~~d~~g~tpLh~A~~   66 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-----------------------------VAAKDKNGSTPLHLAAR   66 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCC-----------------------------TTCCCTTCCCHHHHHHH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-----------------------------CCccCCCCCCHHHHHHH
Confidence            4556778899999999999999999997665554                             45678889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHH
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF  146 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  146 (208)
                      .|+.+++++|++.|++  ++.. +..|+||||+|+..++.+++++|
T Consensus        67 ~~~~~~v~~Ll~~ga~--~~~~-d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           67 NGHLEVVKLLLEAGAD--VXAQ-DKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC--cccc-ccCCCcHHHHHHHcCCHHHHHHh
Confidence            9999999999999998  7777 47899999999999999998876

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.76  E-value=3.8e-18  Score=114.40  Aligned_cols=93  Identities=18%  Similarity=0.270  Sum_probs=78.5

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK  104 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~  104 (208)
                      .+..+.||||.|+..|+.+++++|+++|++                             ++..|..|.||||+|+..|+.
T Consensus        43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------------------------~~~~d~~g~t~L~~A~~~~~~   93 (136)
T 2jab_A           43 KDEYGLTPLYLATAHGHLEIVEVLLKNGAD-----------------------------VNAVDAIGFTPLHLAAFIGHL   93 (136)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----------------------------TTCCCTTCCCHHHHHHHHTCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------------------------CCcCCCCCCCHHHHHHHcCCH
Confidence            345688999999999999999997666554                             456788899999999999999


Q ss_pred             HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc
Q psy4236         105 DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF  149 (208)
Q Consensus       105 ~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  149 (208)
                      +++++|++.|++  ++.. +..|+||||+|+..++.+++++|++.
T Consensus        94 ~~v~~Ll~~g~~--~~~~-~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           94 EIAEVLLKHGAD--VNAQ-DKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHcCCC--CcCc-CCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            999999999988  7776 46788888888888888888887653

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.69  E-value=1.5e-16  Score=123.38  Aligned_cols=105  Identities=17%  Similarity=0.238  Sum_probs=79.1

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDV  106 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~  106 (208)
                      ..+.||||.|+..|+.+++++|+++|+                             +++..|..|+||||+|+..|+.++
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Ga-----------------------------dvn~~d~~G~TpLh~A~~~g~~~~  283 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQNGA-----------------------------NVNQADSAGRGPLHHATILGHTGL  283 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTC-----------------------------CTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHcCC-----------------------------CCCCCCCCCCCHHHHHHHcCcHHH
Confidence            567899999999999999999766555                             455678889999999999999999


Q ss_pred             HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc----------CCCCCcHHHHHHhh
Q psy4236         107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF----------SSRGQTALHKAAMF  163 (208)
Q Consensus       107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~----------~~~~~t~l~~A~~~  163 (208)
                      +++|++.|++  ++.. +..|.||||+|+..++.+++++|+..          +..+.|++..+..+
T Consensus       284 v~~LL~~Gad--~~~~-d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          284 ACLFLKRGAD--LGAR-DSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHHHCcCC--CCCc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            9999999988  7777 47899999999999999999998743          23355666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	208
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	9e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 2e-12
 Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 10/126 (7%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
           +  G T LH  ++ GH  V   +I          +      T LH A+ +    +    L
Sbjct: 261 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG---YTPLHVASHYGNIKLVKFLL 317

Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
                    +  G + LH+AA      I  +L+  GAS      D  TP A+A       
Sbjct: 318 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 377

Query: 201 LAAYLE 206
           +   L+
Sbjct: 378 VTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 3e-12
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 74  LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
           +K+L  +G S    +   +T LH  +R GH +V KY++       +N +  D  QT LH 
Sbjct: 16  VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK--VNAKAKD-DQTPLHC 72

Query: 134 AAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
           AA     ++  + L         ++ G T LH AA          L+   AS        
Sbjct: 73  AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 132

Query: 187 NTPRALALLANDTELAAYL 205
            TP  +A       +A  L
Sbjct: 133 FTPLHVAAKYGKVRVAELL 151

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 14/165 (8%)

Query: 36  AARVGDIKMLKDLHSQGYSLKKIPPKDDHP----NLNHFFFQLKDLHSQGYSLLSIDSVG 91
           AA+ G +++ + L  +             P      ++    +K L  +G S  S    G
Sbjct: 139 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 198

Query: 92  QTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-- 149
            T LH  ++    +V + ++    S      ++ +G T LH AA      +  + L    
Sbjct: 199 YTPLHIAAKQNQVEVARSLLQYGGS---ANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 255

Query: 150 -----SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
                +  G T LH  A      +  +L+  G  +        TP
Sbjct: 256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP 300

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 5e-09
 Identities = 24/113 (21%), Positives = 34/113 (30%), Gaps = 29/113 (25%)

Query: 93  TALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR 152
           T LH  S  GH  +VK ++    S   N+ +                             
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS--PNVSNVK--------------------------- 32

Query: 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
            +T LH AA      +   L+   A +  K  D  TP   A     T +   L
Sbjct: 33  VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 5e-09
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 74  LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
            + L  +     +    G T LH    + + D+VK ++    S   +    + G T LH 
Sbjct: 148 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS--PHSPAWN-GYTPLHI 204

Query: 134 AAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
           AA   +  +    L         S +G T LH AA      +  +L++  A+  + +   
Sbjct: 205 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 264

Query: 187 NTPRALALLANDTELAAYL 205
            TP  L        +A  L
Sbjct: 265 LTPLHLVAQEGHVPVADVL 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 39/178 (21%), Positives = 58/178 (32%), Gaps = 14/178 (7%)

Query: 36  AARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN----HFFFQLKDLHSQGYSLLSIDSVG 91
           AAR+G   M+K L     +          P            +  L  +  S   +   G
Sbjct: 73  AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 132

Query: 92  QTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL---- 147
            T LH  ++YG   V + ++        N    + G T LH A       I  + L    
Sbjct: 133 FTPLHVAAKYGKVRVAELLLERDAH--PNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGG 189

Query: 148 ---FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA 202
                +  G T LH AA   +  +   L+  G S   +     TP  LA      E+ 
Sbjct: 190 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 247

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 36  AARVGDIKMLKDLHSQGYSLKKIPPKDDHP----NLNHFFFQLKDLHSQGYSLLSIDSVG 91
            A+ G + +   L   G  +         P    +       +K L      + +   +G
Sbjct: 271 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 330

Query: 92  QTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSS 151
            + LH  ++ GH D+V  ++    S   N   +D G T L  A      S+  +    + 
Sbjct: 331 YSPLHQAAQQGHTDIVTLLLKNGAS--PNEVSSD-GTTPLAIAKRLGYISVTDVLKVVTD 387

Query: 152 RG 153
             
Sbjct: 388 ET 389

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (144), Expect = 9e-12
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 87  IDSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALHKAA-------MFK 138
           +   G TALH    + H+  + +++   A    L++Q++  GQTALH AA       + K
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEK 63

Query: 139 RRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND 198
             +     L     G TALH A   +  +  C+L+    S      D+   ++     + 
Sbjct: 64  LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 199 TELAAYLE 206
           +   A ++
Sbjct: 124 SHAPAAVD 131

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 5/123 (4%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD-----NDKGQTALHKAAMFKRRSI 142
           D+    A          +                 D     +        +     R + 
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 143 CWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA 202
             +     + G+T LH A   +  S+  +L+  GA  T + Y   TP   ALL  +  LA
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA 241

Query: 203 AYL 205
             L
Sbjct: 242 RLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 74  LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIA 112
           L+ L   G    +    G+T L       +  + + + A
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 3e-11
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 12/129 (9%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
              G TAL   +  GH +V+K ++    + + N  DN      +H         +  +  
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLV-AGGASLTVKDYDSNTPRALALLA 196
                G          +T L  A   K   +   L+      +   D D  T   LA+  
Sbjct: 204 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 263

Query: 197 NDTELAAYL 205
              ++A  L
Sbjct: 264 KLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 3e-09
 Identities = 31/157 (19%), Positives = 46/157 (29%), Gaps = 37/157 (23%)

Query: 36  AARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQL---------KDLHSQGYSLLS 86
           AA  G +++LK L  +  +            L H                L   G  +  
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 87  IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
               G+T L       H  +V+ ++      I N  D+D                     
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSD--------------------- 252

Query: 147 LFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
                 G+TAL  A   K + I  +L   GAS    D
Sbjct: 253 ------GKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
               L    +    D+V+ ++    +  +N Q+ + G T LH A    R  I  + L   
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 151 SRGQTALHKAAMFKRRSICCM 171
           +         A     +    
Sbjct: 63  ADPVLRKKNGATPFLLAAIAG 83

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 22/147 (14%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 74  LKDLHSQGYSLLSIDSV-GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTAL- 131
           ++ L   G ++   +   G T LH   +   +D+V+ ++      +L  ++         
Sbjct: 21  VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80

Query: 132 ---HKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY---- 184
                  +    S           G TA  +AA++ +      L   GA++ ++      
Sbjct: 81  IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED 140

Query: 185 ------DSNTPRALALLANDTELAAYL 205
                    T    A      E+   L
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKIL 167

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 2e-10
 Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 10/137 (7%)

Query: 64  HPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD 123
                     +K L  +G  + +++  G T LHY +     ++   ++    +   + +D
Sbjct: 76  IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN--PDAKD 133

Query: 124 NDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGG 176
           +    TA+H+AA      +  + L++        + G T LH A   +R     +LV+ G
Sbjct: 134 HY-EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 192

Query: 177 ASLTVKDYDSNTPRALA 193
           AS+ +++ +  TP  +A
Sbjct: 193 ASIYIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 10/120 (8%)

Query: 77  LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAM 136
           + +        D   +TALH+    GH ++V++++            +D G + LH AA 
Sbjct: 23  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAAS 79

Query: 137 FKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
             R  I    L         +  G T LH AA   R  I  ML+ GGA+   KD+   T 
Sbjct: 80  AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 139

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 8/120 (6%)

Query: 96  HYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF------ 149
                     V K        +     +  KG+TALH AA      I    +        
Sbjct: 156 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD 215

Query: 150 --SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
                G+T +  AA   R  +   L+  GAS+   D   +T R LA   N   +    ++
Sbjct: 216 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 60  PKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSIL 119
                  +++       +  +G +    D  G+T +   ++ G  +VV Y+I    S  +
Sbjct: 190 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS--V 247

Query: 120 NMQDNDKGQTALHKAAMFKRRSICWMFL 147
              D     TA   A      +I  +F 
Sbjct: 248 EAVDAT-DHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 7/87 (8%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSIL------NMQDNDKGQTALHKAAMFKRRSICW 144
            +T LH+ +     +  + +I       +      N  D D   T L  A + +RR +  
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD-ENTPLMLAVLARRRRLVA 91

Query: 145 MFLFFSSRGQTALHKAAMFKRRSICCM 171
             +   +              ++    
Sbjct: 92  YLMKAGADPTIYNKSERSALHQAAANR 118

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 77  LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIAC 113
           L  QG S+ ++D+   TA        H ++V     C
Sbjct: 240 LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 23/99 (23%)

Query: 92  QTALH-YGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
           ++ +  +    G   + + I        +N+ D    +T LH  A           +   
Sbjct: 1   ESPIKLHTEAAGSYAITEPIT----RESVNIIDPRHNRTVLHWIASNSSAEKSEDLI--- 53

Query: 151 SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
                                 +A GA +   D D NTP
Sbjct: 54  ---------------VHEAKECIAAGADVNAMDCDENTP 77

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 6e-08
 Identities = 27/210 (12%), Positives = 55/210 (26%), Gaps = 21/210 (10%)

Query: 1   MNTSGTYLIHVGLPSSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHS---QGYSLKK 57
           M  S    IH+ LP +K+   +  +L        +       ++  D H    +   +  
Sbjct: 40  MTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNR----NAKQLWSDAHKKGIKSEVICF 95

Query: 58  IPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSS 117
           +       +       L  L +    +  I +    A    +  GH  V+  +   AP+ 
Sbjct: 96  VAAITGCSSALDT---LCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

Query: 118 ILNMQDNDKGQTALHKAAMFKRRSICWMFL----------FFSSRGQTALHKAAMFKRRS 167
           I+ M   +    A   AA      +                 +         A      +
Sbjct: 153 IMAMIQAE-NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

Query: 168 ICCMLVAGGASLTVKDYDSNTPRALALLAN 197
           +   L+     L   +          +   
Sbjct: 212 VINFLLDCPVMLAYAEIHEFEYGEKYVNPF 241

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 23/176 (13%), Positives = 46/176 (26%), Gaps = 13/176 (7%)

Query: 36  AARVGD---IKMLKDLHSQGYSLKKIPPKDDHP----NLNHFFFQLKDLHSQG--YSLLS 86
           AA  G    +  L  L +    +K I  ++         N     L  L        +  
Sbjct: 97  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 156

Query: 87  IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           I +    A    +  GH  V+  +   AP+    M   +        A      ++    
Sbjct: 157 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 216

Query: 147 LFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA 202
           L        A      +  + +   +         +  + +    L+      +L 
Sbjct: 217 LDCPVMLAYAEIHEFEYGEKYVNPFIARHVN----RLKEMHDAFKLSNPDGVFDLV 268

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 4/56 (7%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSIL---NMQDNDKGQTALHKAAMFKRRSIC 143
               L   +     D ++++++      L        D     L  A     +  C
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD-ANELLRLALRLGNQGAC 333

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 28/182 (15%), Positives = 54/182 (29%), Gaps = 28/182 (15%)

Query: 36  AARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQL--------KDLHSQGYSLLSI 87
              + +++++K L   G +        +   +                 L      L+  
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 173

Query: 88  DSVGQTALHY----GSRYGHKDVVKYIIACAPSSIL------NMQDNDKGQTALHKAAMF 137
           DS+ +T LH+        G     KY +      I+           ++ ++  +     
Sbjct: 174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 233

Query: 138 KRRSICWMFLFFS----------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSN 187
           ++ SI                  S G T L+ AA     SI   L+  GA   + +    
Sbjct: 234 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 293

Query: 188 TP 189
            P
Sbjct: 294 RP 295

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 27/143 (18%)

Query: 87  IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
           +D  G T LH+ +   + ++VK+++    +      DN   ++ L KA           F
Sbjct: 103 VDEHGNTPLHWLTSIANLELVKHLVKHGSN--RLYGDNMG-ESCLVKAVKSVNNYDSGTF 159

Query: 147 LFF-----------SSRGQTALHKAAMFKRRSICCMLV-------------AGGASLTVK 182
                          S  +T LH   +    + C                      +   
Sbjct: 160 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 219

Query: 183 DYDSNTPRALALLANDTELAAYL 205
             +  +            +   L
Sbjct: 220 TNEKESKPNDKNGERKDSILENL 242

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
           DS G T L+  +R G+  +V  ++         + +   G   +   A
Sbjct: 256 DSNGDTCLNIAARLGNISIVDALLDYGAD--PFIANKS-GLRPVDFGA 300

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 4e-07
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSI--LNMQDNDKGQTALHKAAMFKRRSICWMF 146
           G T LH     G+   V  ++         L++ +N   QT LH A +    S+  + 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRLL 59

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 5e-04
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 9/146 (6%)

Query: 63  DHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQ 122
           +H +       L         L + +  G TALH       ++ V+ ++           
Sbjct: 82  EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI 141

Query: 123 DNDKGQTALHKAAMFKRRSIC-------WMFLFFSSRGQTALHKAAMFKRRSICCMLVAG 175
            + +    L  A      S+                 G +ALH A+      +   LV  
Sbjct: 142 KSGRSP--LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 199

Query: 176 GASLTVKDYDSNTPRALALLANDTEL 201
           GA  ++K+  ++TP  +A      ++
Sbjct: 200 GADSSLKNCHNDTPLMVARSRRVIDI 225

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.0 bits (110), Expect = 5e-07
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 29/136 (21%)

Query: 58  IPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSS 117
           I                + L+S   + +     G TALH  +  G+ +V+K +I      
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD- 224

Query: 118 ILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGA 177
            +N++D D                           G T LH AA + +   C +LV    
Sbjct: 225 -VNIKDYD---------------------------GWTPLHAAAHWGKEEACRILVENLC 256

Query: 178 SLTVKDYDSNTPRALA 193
            +   +    T   +A
Sbjct: 257 DMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
           G T LH  + +G ++  + ++       +   +   GQTA   A 
Sbjct: 232 GWTPLHAAAHWGKEEACRILVENLCD--MEAVNKV-GQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.9 bits (94), Expect = 5e-05
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 2/142 (1%)

Query: 64  HPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD 123
                 +    + L SQG  + +++S G T L        +++++         +     
Sbjct: 112 AAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE--VNRQGVDIEAA 169

Query: 124 NDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
             + +  + + A     S     +  +  G TALH AA      +  +L+     + +KD
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229

Query: 184 YDSNTPRALALLANDTELAAYL 205
           YD  TP   A      E    L
Sbjct: 230 YDGWTPLHAAAHWGKEEACRIL 251

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
                      G  + V  ++       +N  + D G TALH+A +     +    +   
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGAD--INYANVD-GLTALHQACIDDNVDMVKFLVENG 96

Query: 151 SRGQTALHKAAMFKRRSICCM 171
           +      ++  +    +  C 
Sbjct: 97  ANINQPDNEGWIPLHAAASCG 117

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 5e-07
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPS--SILNMQDNDKGQTALHKAAMFKRRSICWMFLF 148
           G + LH    +  K +   +I       + LN Q+N   QT LH A +  +  I    L 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLG 60

Query: 149 FSSRGQTALHKAAMFKRRSICCM 171
                +    +       +    
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQG 83

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 9e-05
 Identities = 14/76 (18%), Positives = 24/76 (31%)

Query: 132 HKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRA 191
                        +       G+TALH A   +   +  +L+  GA +    Y   +P  
Sbjct: 124 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 183

Query: 192 LALLANDTELAAYLEK 207
           L      T +   L +
Sbjct: 184 LTWGRPSTRIQQQLGQ 199

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 1e-06
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 93  TALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
             LH          V+ ++   PS +   +D D G+  LH +  F+   I    
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLL-LQKDQD-GRIPLHWSVSFQAHEITSFL 53

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
           D  G T L +    GH D    ++    +   ++ DN  G  A   A 
Sbjct: 169 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNK-GAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 24/174 (13%), Positives = 39/174 (22%), Gaps = 15/174 (8%)

Query: 36  AARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTAL 95
           +      ++   L S+  ++      DD                   SL           
Sbjct: 41  SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 100

Query: 96  HYGSRYGHKDVVKYIIACAPSSILNMQD------NDKGQTALHKAAMFKRRSICWMFLFF 149
                     +         S  L          +   Q  LH+AA      +  +    
Sbjct: 101 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 160

Query: 150 --------SSRGQTALHKAAMFKRRSICCMLV-AGGASLTVKDYDSNTPRALAL 194
                     +G T L  A          +LV   GA   + D        +AL
Sbjct: 161 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 3e-06
 Identities = 29/181 (16%), Positives = 48/181 (26%), Gaps = 11/181 (6%)

Query: 36  AARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHF---FFQLKDLHSQGYSLLSIDSVGQ 92
           AAR       K L   G            P           +  +  +  +      +  
Sbjct: 30  AARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD 89

Query: 93  TALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--- 149
                                   + +N  DN  G+TALH AA         + L     
Sbjct: 90  GTTPLILAARLAIEGMVEDLITADADINAADNS-GKTALHWAAAVNNTEAVNILLMHHAN 148

Query: 150 ----SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
                 + +T L  AA          L+   A+  + D+    PR +A      ++   L
Sbjct: 149 RDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

Query: 206 E 206
           +
Sbjct: 209 D 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 6/122 (4%)

Query: 74  LKDLHSQGYSL-LSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
           + DL +QG  L  ++D  G+T+LH  +R+   D  K ++     +            A  
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 133 KAAMFKRRSI-----CWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSN 187
            A       I               G T L  AA      +   L+   A +   D    
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 188 TP 189
           T 
Sbjct: 125 TA 126

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 4e-06
 Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 30/151 (19%)

Query: 34  LKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQT 93
            +A +  DI  L   ++ G  L +  P  +                            +T
Sbjct: 11  CEAVKTRDIFGLLQAYADGVDLTEKIPLANG-----------------------HEPDET 47

Query: 94  ALHYGSR---YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF---- 146
           ALH   R        +V +++  + +                     +   +        
Sbjct: 48  ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 107

Query: 147 LFFSSRGQTALHKAAMFKRRSICCMLVAGGA 177
              +  G+T L  A   K      +L    +
Sbjct: 108 EIANESGETPLDIAKRLKHEHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 40  GDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTAL 95
             + ++  L     +L K   K                LK L     S+   +  G+T L
Sbjct: 59  TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 118

Query: 96  HYGSRYGHKDVVKYIIACAPSSILNMQDNDK 126
               R  H+   + +   A S   N   + +
Sbjct: 119 DIAKRLKHEHCEELLTQ-ALSGRFNSHVHVE 148

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 7/120 (5%)

Query: 93  TALHYGSRYGHKDVVKYIIACAP----SSILNMQDNDKGQTALHKAAMFKRRSICWMFLF 148
             L   S  G  D+V+ II         +   +        A H   +            
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 149 FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY-DSNTPRALALLA--NDTELAAYL 205
             S G T LH AA      +C  LV  GA++    Y D  T            T+ + +L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (82), Expect = 9e-04
 Identities = 19/146 (13%), Positives = 41/146 (28%), Gaps = 7/146 (4%)

Query: 34  LKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQT 93
           L+AAR G    ++ L + G             +L   +           + +S D+  + 
Sbjct: 7   LEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66

Query: 94  ALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF---- 149
                     +     +             +    TALH A     + +  + + +    
Sbjct: 67  DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126

Query: 150 ---SSRGQTALHKAAMFKRRSICCML 172
              S   +TA   +       +  +L
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (80), Expect = 0.001
 Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 36/150 (24%)

Query: 93  TALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSS 151
             L   +R G  D V+ ++A  AP +   +  +     A +         +       + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 152 R-----------------------------------GQTALHKAAMFKRRSICCMLVAGG 176
                                                 TALH A     + +  +L+  G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 177 ASLTVKDYDSNTPRALALLANDTELAAYLE 206
           A +  +     T   +++   + +LA  L+
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 9/48 (18%), Positives = 17/48 (35%)

Query: 64  HPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII 111
           H  +      +    +    L   D+ G T L    + G +D+V  + 
Sbjct: 106 HLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.004
 Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 9/148 (6%)

Query: 34  LKAARVGDIKMLKDLHSQGYSLKKIPPKDD--HPNLNHFFFQLKDLHSQGYSLLSIDSVG 91
             AA  GD++ ++ L  +         +       +  F      L              
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDT 66

Query: 92  QTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS- 150
                         +    +     + +N+ D   G   +H A      ++       S 
Sbjct: 67  SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT-GALPIHLAVQEGHTAVVSFLAAESD 125

Query: 151 -----SRGQTALHKAAMFKRRSICCMLV 173
                +RG T L  A     + +  +L 
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACA 114
           G+  +      GH+DV +Y+ A A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (76), Expect = 0.004
 Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 4/119 (3%)

Query: 91  GQTALHYGSRYGHKDVVKYIIACAPS----SILNMQDNDKGQTALHKAAMFKRRSICWMF 146
               L   +  G  + V+ ++    +    +    +          + A           
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 147 LFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
               +     +H AA         +L   GA L V+D     P  LA      ++A YL
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 88  DSVGQTALHYGSRYGHKDVVKYIIA 112
           +  G TA      YG  +VV  + A
Sbjct: 130 NHKGDTACDLARLYGRNEVVSLMQA 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.88
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.85
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.84
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.84
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.83
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.79
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.79
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.77

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.5e-36  Score=220.28  Aligned_cols=184  Identities=23%  Similarity=0.219  Sum_probs=162.1

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCCC---CcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHH
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYS---LKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALH   96 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~---~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~   96 (208)
                      .++.+|.||||.||+.|+.+++++|+++|++   ++..+..|.+|++    .+..+++++|+++|++++.+|..|.||||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            3567899999999999999999999999988   5556677888874    56789999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCc---------------------------------------------cccCCCCCCccHH
Q psy4236          97 YGSRYGHKDVVKYIIACAPSSI---------------------------------------------LNMQDNDKGQTAL  131 (208)
Q Consensus        97 ~a~~~g~~~~~~~ll~~g~~~~---------------------------------------------~~~~~~~~~~t~l  131 (208)
                      +|+..++.++++++++.+....                                             ++.+ +..|.|||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~-d~~g~TpL  162 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPL  162 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC-CTTSCCHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccc-cccCcccc
Confidence            9999999999999976432211                                             1223 46789999


Q ss_pred             HHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHH
Q psy4236         132 HKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAA  203 (208)
Q Consensus       132 ~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  203 (208)
                      |+|+..++.+++++|++.        +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+++.++++
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~  242 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR  242 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             cccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            999999999999999843        456899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhC
Q psy4236         204 YLEKS  208 (208)
Q Consensus       204 ~L~~~  208 (208)
                      +|+++
T Consensus       243 ~Ll~~  247 (255)
T d1oy3d_         243 LLRAH  247 (255)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            99874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-35  Score=212.43  Aligned_cols=182  Identities=18%  Similarity=0.239  Sum_probs=165.4

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~   97 (208)
                      +...+..|+||||.|+..|+.+++++|++++.+.......+.++..    .+..+++++|+++|++++.+|..|.||||+
T Consensus        30 ~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~  109 (223)
T d1uoha_          30 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY  109 (223)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhH
Confidence            3345677899999999999999999999999999888887776653    456799999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHH
Q psy4236          98 GSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICC  170 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~  170 (208)
                      |+..|+.+++++|++.|++  ++.. +..|.||||+++..++.+++++|.+.       +..|+||||.|+..|+.++++
T Consensus       110 A~~~~~~e~~~~Ll~~g~d--~~~~-~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~  186 (223)
T d1uoha_         110 AASKNRHEIAVMLLEGGAN--PDAK-DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK  186 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCC--CCCc-CCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHH
Confidence            9999999999999999998  7777 47899999999999999999998843       678999999999999999999


Q ss_pred             HHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         171 MLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       171 ~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +|++.|+|++.+|.+|+||+|+| .+|+.+++++|++
T Consensus       187 ~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         187 LLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999999999999998 5799999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.3e-31  Score=198.74  Aligned_cols=179  Identities=20%  Similarity=0.207  Sum_probs=155.2

Q ss_pred             hchHHHHHHHHhCCHHHHHHH--------HHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHH
Q psy4236          28 KTSEGVLKAARVGDIKMLKDL--------HSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTAL   95 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~L--------i~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l   95 (208)
                      .|.||||+||..|+.++++.|        ++.|+++|.++..|.+|++    .+..+++++|+++|++++.+|..|.||+
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            488999999999999999777        5679999999999999975    4668999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCC---C--C-c---------------------------------------cccCCCCCCccH
Q psy4236          96 HYGSRYGHKDVVKYIIACAP---S--S-I---------------------------------------LNMQDNDKGQTA  130 (208)
Q Consensus        96 ~~a~~~g~~~~~~~ll~~g~---~--~-~---------------------------------------~~~~~~~~~~t~  130 (208)
                      ++|+..++.++++++...+.   .  . .                                       .... +..|.|+
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~  190 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE-KYKGRTA  190 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSS-SCCCCCT
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccccc-ccCCCCc
Confidence            99999999888877754210   0  0 0                                       1111 3568899


Q ss_pred             HHHHHhhCcHHHHHHHHh--------cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHH
Q psy4236         131 LHKAAMFKRRSICWMFLF--------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA  202 (208)
Q Consensus       131 l~~a~~~~~~~~~~~l~~--------~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  202 (208)
                      ||+++..++.+++++++.        ++..|.||||+|+..|+.+++++|++.|+|++.+|..|.||||+|+.+|+.+++
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999988662        367899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q psy4236         203 AYLEK  207 (208)
Q Consensus       203 ~~L~~  207 (208)
                      ++|++
T Consensus       271 ~lL~~  275 (277)
T d2fo1e1         271 DIFDR  275 (277)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            99975

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.4e-30  Score=194.58  Aligned_cols=179  Identities=22%  Similarity=0.202  Sum_probs=156.7

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcC
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYG  102 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g  102 (208)
                      ..+.|+|+.||..|+.++|++|+++|+++|..+..|.+|++    .+..+++++|+++|.+.+..+..+.+||++++..+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            34568999999999999999999999999999999999974    56789999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh----------------------------------
Q psy4236         103 HKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF----------------------------------  148 (208)
Q Consensus       103 ~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~----------------------------------  148 (208)
                      +.++++.+++.|+.  .... +..+.+++++|+..+..+.+..++.                                  
T Consensus       118 ~~~~~~~l~~~~~~--~~~~-~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (291)
T d1s70b_         118 YLDIAEYLISQGAH--VGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (291)
T ss_dssp             CHHHHHHHHHTTCC--TTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             ccchhhcccccCcc--cccc-cccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccc
Confidence            99999999999987  5555 4678889988888877777776651                                  


Q ss_pred             cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         149 FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       149 ~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      .+..|.||||.|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~  254 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN  254 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            146688999999999999999999999999998899999999999999999999988763

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-32  Score=194.64  Aligned_cols=180  Identities=18%  Similarity=0.178  Sum_probs=154.5

Q ss_pred             hchHHHHHHHHhCCH----HHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHH
Q psy4236          28 KTSEGVLKAARVGDI----KMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGS   99 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~----~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~   99 (208)
                      +|.||||+|+..|+.    ++++.+.+.|+++|..+..|.+|++    .+..+++++|++.|++++..|..|.+||++++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            478999999999986    4555666789999999999999975    45689999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCc---cccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCCHHH
Q psy4236         100 RYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSI  168 (208)
Q Consensus       100 ~~g~~~~~~~ll~~g~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~~~~  168 (208)
                      ..+..++++.+++.+....   ........|.||||.|+..++.+.+++++..        +.+|.||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            9999999999998765421   1122134578999999999999999998844        4579999999999999999


Q ss_pred             HHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         169 CCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       169 ~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +++|+++|+|++.+|..|+||+|+|+.+++.+++++|.+
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             HHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.7e-28  Score=174.89  Aligned_cols=182  Identities=19%  Similarity=0.176  Sum_probs=152.7

Q ss_pred             hHH-HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccc----hHHHHHHHHHHcCC-CCCcCCCCCccH
Q psy4236          21 DII-NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN----HFFFQLKDLHSQGY-SLLSIDSVGQTA   94 (208)
Q Consensus        21 ~~~-~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~----~~~~~~~~l~~~g~-~~~~~d~~g~t~   94 (208)
                      ++. ..+..|.||||+||+.|+.+++++|+++|++++..+..+.++...    .............. ........+.++
T Consensus        14 din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (209)
T d1ot8a_          14 ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTP   93 (209)
T ss_dssp             HHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCH
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            453 357889999999999999999999999999999998888877531    12222333333332 333445568889


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHH
Q psy4236          95 LHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRS  167 (208)
Q Consensus        95 l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~  167 (208)
                      .+.+.........+.|.+.+.+  ++.. +..|+|||++++..+..++++.++..       +..|.||||+|+..|+.+
T Consensus        94 ~~~~~~~~~~~~~~~L~~~~~~--~~~~-~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~  170 (209)
T d1ot8a_          94 LILAARLAIEGMVEDLITADAD--INAA-DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE  170 (209)
T ss_dssp             HHHHHHTTCTTHHHHHHHTTCC--TTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             ccccccccchhhhhhhhhhccc--cccc-CCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHH
Confidence            9999999999999999999988  7766 47799999999999999999988844       677999999999999999


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Q psy4236         168 ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL  205 (208)
Q Consensus       168 ~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  205 (208)
                      ++++|++.|+|++.+|..|+||||+|+.+|+.++|++|
T Consensus       171 ~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         171 ASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999999999999999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-29  Score=169.95  Aligned_cols=145  Identities=21%  Similarity=0.280  Sum_probs=126.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHH
Q psy4236          31 EGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYI  110 (208)
Q Consensus        31 ~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~l  110 (208)
                      ++||.||..|+.+++++|+++|+++                             +.+|..|.||||+|+ .|+.+++++|
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-----------------------------n~~d~~g~TpL~~A~-~~~~ei~~~L   52 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-----------------------------NAQNGFGRTALQVMK-LGNPEIARRL   52 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-----------------------------TCCCTTSCCHHHHCC-SSCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-----------------------------CccCCcccccccccc-cccccccccc
Confidence            7999999999999999976666555                             457788999999875 6889999999


Q ss_pred             HHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCC-CCccc
Q psy4236         111 IACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGA-SLTVK  182 (208)
Q Consensus       111 l~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~  182 (208)
                      ++.|++  ++.. +..+.++++.++..+..+.+++++..       +..|.+|+|+|+..++.+++++|+++|+ +.+.+
T Consensus        53 l~~~a~--~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  129 (156)
T d1ihba_          53 LLRGAN--PDLK-DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR  129 (156)
T ss_dssp             HHTTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC
T ss_pred             cccccc--cccc-cccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999988  7666 46788999999999999999988744       5678899999999999999999999765 89999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         183 DYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       183 ~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      |..|.||||+|+.+++.+++++|+++
T Consensus       130 d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_         130 NHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999999999874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.7e-29  Score=168.70  Aligned_cols=147  Identities=20%  Similarity=0.244  Sum_probs=123.1

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHH
Q psy4236          29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVK  108 (208)
Q Consensus        29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~  108 (208)
                      +.+.|+.||..|+.+++++|++.                            .+++++.+|..|+||||+|+. |+.++++
T Consensus         2 ~g~~L~~Aa~~g~~~~vk~lL~~----------------------------~~~~~n~~d~~g~t~L~~A~~-~~~~~v~   52 (156)
T d1bd8a_           2 AGDRLSGAAARGDVQEVRRLLHR----------------------------ELVHPDALNRFGKTALQVMMF-GSTAIAL   52 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT----------------------------TCCCTTCCCTTSCCHHHHSCT-TCHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHh----------------------------CCCCCCccCCCCCcccccccc-ccccccc
Confidence            34679999999999999998654                            344556677888888888764 7788888


Q ss_pred             HHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcc
Q psy4236         109 YIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTV  181 (208)
Q Consensus       109 ~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  181 (208)
                      +|++.+++  ++.. +..+.+|++.++..++.+++++++++       +..|.||||+|+..|+.+++++|+ .|++++.
T Consensus        53 ~Ll~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~  128 (156)
T d1bd8a_          53 ELLKQGAS--PNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR  128 (156)
T ss_dssp             HHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTC
T ss_pred             cccccccc--cccc-ccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccc
Confidence            88888877  6665 36688888888888888888888754       456889999999999999999887 6899999


Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         182 KDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       182 ~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      +|.+|+||+|+|+.+|+.+++++|++.
T Consensus       129 ~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         129 RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999999999999999874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-28  Score=176.96  Aligned_cols=176  Identities=24%  Similarity=0.215  Sum_probs=162.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHH-cCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH
Q psy4236          30 SEGVLKAARVGDIKMLKDLHS-QGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK  104 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~-~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~  104 (208)
                      .+.|+.+|+.|+.+.++.+++ .+.+++.+|..|.+|++    .+..+++++++..+......+..+.++++.++..++.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            458899999999999988876 57899999999999975    5678999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCC
Q psy4236         105 DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGA  177 (208)
Q Consensus       105 ~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~  177 (208)
                      +++++|++.|++  ++.. +..|.||||+|+..++.+++++|++.       +..|.||||+|+..++.+++++|...|.
T Consensus        84 ~i~~~Ll~~~~d--~~~~-d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~  160 (223)
T d1uoha_          84 EIVKALLGKGAQ--VNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA  160 (223)
T ss_dssp             HHHHHHHHTTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             chhHHHhccCce--eEee-CCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccc
Confidence            999999999988  7777 47899999999999999999999965       4678999999999999999999999999


Q ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         178 SLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       178 ~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      +++..|..|+||||+|+.+|+.+++++|+++
T Consensus       161 ~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~  191 (223)
T d1uoha_         161 STNIQDTEGNTPLHLACDEERVEEAKLLVSQ  191 (223)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             eeeeccCCCCceeccccccCcHHHHHHHHHC
Confidence            9999999999999999999999999999863

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.3e-28  Score=166.05  Aligned_cols=143  Identities=24%  Similarity=0.314  Sum_probs=127.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHH
Q psy4236          30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKY  109 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~  109 (208)
                      .|||+.||+.|+.+++++|+++|+++                             + .|..|+||||+|+..++.++++.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-----------------------------~-~~~~g~t~L~~a~~~~~~~~~~~   52 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-----------------------------T-TDWLGTSPLHLAAQYGHFSTTEV   52 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-----------------------------C-CCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-----------------------------c-cccCCCccccccccccccccccc
Confidence            48999999999999999987776654                             2 56789999999999999999999


Q ss_pred             HHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCccc
Q psy4236         110 IIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVK  182 (208)
Q Consensus       110 ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  182 (208)
                      ++.....  .... ...+.++++.++...+.+.++++...       +..|.||||+|+..|+.+++++|++.|++++.+
T Consensus        53 ~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~  129 (153)
T d1awcb_          53 LLRAGVS--RDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ  129 (153)
T ss_dssp             HHTTTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccccccc--cccc-ccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCccc
Confidence            9988765  3333 35678899999999999999998843       678999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHH
Q psy4236         183 DYDSNTPRALALLANDTELAAYL  205 (208)
Q Consensus       183 ~~~g~t~l~~a~~~~~~~~~~~L  205 (208)
                      |.+|.||+|+|+.+|+.+++++|
T Consensus       130 d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         130 SKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-28  Score=190.29  Aligned_cols=176  Identities=22%  Similarity=0.184  Sum_probs=154.1

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc-------------------------------------chH
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL-------------------------------------NHF   70 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~-------------------------------------~~~   70 (208)
                      .+.+||+.|+..|+.+++++|+++|++++..+..+.+++.                                     .+.
T Consensus       164 ~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  243 (408)
T d1n11a_         164 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH  243 (408)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCc
Confidence            4667999999999999999999999999988877776532                                     112


Q ss_pred             HHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-
Q psy4236          71 FFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-  149 (208)
Q Consensus        71 ~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-  149 (208)
                      .++++++...+...+..+..|.+|++.|+..++.+++++|++.|++  ++.. ...+.|||+.++..+..++++++++. 
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~--~~~~-~~~~~t~L~~~~~~~~~~~~~~ll~~g  320 (408)
T d1n11a_         244 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM--VDAT-TRMGYTPLHVASHYGNIKLVKFLLQHQ  320 (408)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC--TTCC-CSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred             HhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc--cccc-cccccccchhhcccCcceeeeeecccc
Confidence            4567788888888888888999999999999999999999999988  6665 35688999999999999999998843 


Q ss_pred             ------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236         150 ------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLE  206 (208)
Q Consensus       150 ------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~  206 (208)
                            +..|.||||.|+..|+.+++++|+++|+|++.+|.+|.||||+|+.+|+.+++++|.
T Consensus       321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                  567999999999999999999999999999999999999999999999999999874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.9e-29  Score=179.65  Aligned_cols=181  Identities=17%  Similarity=0.128  Sum_probs=147.7

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCC---CCCcc----chHHHHHHHHHHcCCCCC--cCCCCCc
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKD---DHPNL----NHFFFQLKDLHSQGYSLL--SIDSVGQ   92 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~g~~~~--~~d~~g~   92 (208)
                      +...+.+|.||||+|+..|+.+++++|+++|++++..+..+   .++..    ....++++.++..+...+  ..+..+.
T Consensus        27 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (229)
T d1ixva_          27 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV  106 (229)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSC
T ss_pred             ccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33445678889999999999999999999999987655443   34332    344677888888777554  4556788


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhC
Q psy4236          93 TALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFK  164 (208)
Q Consensus        93 t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~  164 (208)
                      ++++.++..++.++++.|++.|..  .... +..|+||||+++..++.+++++|++.        +..|.||||+|+..|
T Consensus       107 ~~l~~~~~~~~~~~~~~l~~~~~~--~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~  183 (229)
T d1ixva_         107 TCLHLAVGKKWFEVSQFLIENGAS--VRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG  183 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC--SCCC-CTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTT
T ss_pred             cccccccccchhhhhhhhhhhccc--cccc-CCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccc
Confidence            999999999999999999999887  6666 47799999999999999999999843        567899999999999


Q ss_pred             CHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         165 RRSICCMLVA-GGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       165 ~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      +.+++++|++ .|+|++.+|..|+||||+|+.   .+++++|+++
T Consensus       184 ~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~  225 (229)
T d1ixva_         184 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNN  225 (229)
T ss_dssp             CHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHH
T ss_pred             cHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHc
Confidence            9999999996 699999999999999999874   5788888763

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-28  Score=176.11  Aligned_cols=176  Identities=20%  Similarity=0.223  Sum_probs=148.7

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHH----cCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHH
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHS----QGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGS   99 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~----~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~   99 (208)
                      +|.||||.||..|+.++++.|++    .|++++.++..|.+|++    .+..+++++|+++|++++..+..+.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            58999999999999999999885    79999999999999975    56689999999999999998888999999988


Q ss_pred             hcCCHHHHHHHHHcCCCCc-----------------------------------cccCCCCCCccHHHHHHhhCcHHHHH
Q psy4236         100 RYGHKDVVKYIIACAPSSI-----------------------------------LNMQDNDKGQTALHKAAMFKRRSICW  144 (208)
Q Consensus       100 ~~g~~~~~~~ll~~g~~~~-----------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~  144 (208)
                      ..+..++++.+........                                   ........+.++++.++..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            8888888777765322110                                   11111345778899999999999988


Q ss_pred             HHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHH
Q psy4236         145 MFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAA  203 (208)
Q Consensus       145 ~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  203 (208)
                      .+++.       +..|.||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+.+|+.++++
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            88743       567899999999999999999999999999999999999999999999988875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.6e-28  Score=173.21  Aligned_cols=176  Identities=20%  Similarity=0.128  Sum_probs=156.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCc---CCCCCccHHHHHHhcC
Q psy4236          31 EGVLKAARVGDIKMLKDLHSQ-GYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLS---IDSVGQTALHYGSRYG  102 (208)
Q Consensus        31 ~~l~~A~~~g~~~~~~~Li~~-g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~---~d~~g~t~l~~a~~~g  102 (208)
                      +|||+||+.|+.+.++.|++. +.+++.++..|.+|++    .+..+++++|+++|++++.   .+..|.+|+|+++..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            699999999999999999985 6899999999999975    5678999999999999864   4667999999999999


Q ss_pred             CHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhC
Q psy4236         103 HKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAG  175 (208)
Q Consensus       103 ~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~  175 (208)
                      ..++++.++..+........ +..+.++++.++..++.++.+.|+..       +..|+||||+|+..|+.+++++|++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccc-ccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence            99999999988876444444 46789999999999999999999843       57789999999999999999999997


Q ss_pred             C-CCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         176 G-ASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       176 g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      | .+++.+|.+|.||||+|+.+|+.+++++|++
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~  193 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE  193 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccCCchhhhcccccHHHHHHHHH
Confidence            6 7889999999999999999999999999984

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-27  Score=175.13  Aligned_cols=180  Identities=21%  Similarity=0.157  Sum_probs=133.8

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCC-CCCCCcc----chHHHHHHHHHHcCCCCCcC---------------
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPP-KDDHPNL----NHFFFQLKDLHSQGYSLLSI---------------   87 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~-~~~~~~~----~~~~~~~~~l~~~g~~~~~~---------------   87 (208)
                      ++.|+|+.|++.|+++++++|+++|+++|.++. .|.+|++    .+..+++++|++.+..+...               
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            467899999999999999999999999987764 5677754    56678888888877654332               


Q ss_pred             ------------------CCCCccHHHHHHhcCCHHHHHHHHHcCCCCcccc-------CCCCCCccHHHHHHhhCcHHH
Q psy4236          88 ------------------DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNM-------QDNDKGQTALHKAAMFKRRSI  142 (208)
Q Consensus        88 ------------------d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~-------~~~~~~~t~l~~a~~~~~~~~  142 (208)
                                        +..+.++++.|+..+....++.++....+.....       .....|.||||+|+..++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                              2334455555555555555555555433311100       002346777777777777777


Q ss_pred             HHHHHh---------------------------------------------cCCCCCcHHHHHHhhCCHHHHHHHHh-CC
Q psy4236         143 CWMFLF---------------------------------------------FSSRGQTALHKAAMFKRRSICCMLVA-GG  176 (208)
Q Consensus       143 ~~~l~~---------------------------------------------~~~~~~t~l~~A~~~~~~~~~~~Ll~-~g  176 (208)
                      +++|++                                             ++..|.||||.|+..|+.+++++|++ .|
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence            776651                                             14568999999999999999999998 69


Q ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         177 ASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       177 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      ++++.+|.+|.||||+|+.+|+.+++++|++
T Consensus       244 ~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~  274 (285)
T d1wdya_         244 IEINDTDSDGKTALLLAVELKLKKIAELLCK  274 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.1e-27  Score=175.56  Aligned_cols=151  Identities=19%  Similarity=0.146  Sum_probs=129.2

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHc---------------------
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQ---------------------   80 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~---------------------   80 (208)
                      +..|.||||+||..|+.+++++|+++|++++..+..+.+|+.    .+..++++.|++.                     
T Consensus        42 ~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~  121 (255)
T d1oy3d_          42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP  121 (255)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------
T ss_pred             CCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcc
Confidence            356779999999999999999999999999999999998853    3445566555432                     


Q ss_pred             --------------------------CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHH
Q psy4236          81 --------------------------GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA  134 (208)
Q Consensus        81 --------------------------g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a  134 (208)
                                                +.+++.+|..|.||||+|+..++.+++++|++.+++  ....++..|.||||+|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~TpL~~A  199 (255)
T d1oy3d_         122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD--LNKPEPTCGRTPLHLA  199 (255)
T ss_dssp             ----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHH
T ss_pred             cchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccc--cccccccccccccccc
Confidence                                      223456778899999999999999999999999987  5544456799999999


Q ss_pred             HhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCC
Q psy4236         135 AMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS  178 (208)
Q Consensus       135 ~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~  178 (208)
                      +..++.+++++|++.       +..|.||||+|+..++.+++++|+++||+
T Consensus       200 ~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999965       56799999999999999999999999997

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=5.9e-28  Score=180.28  Aligned_cols=177  Identities=20%  Similarity=0.195  Sum_probs=151.3

Q ss_pred             hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      .+..|.||||.|+..|+.+++++|+++|++++..+..+.+++.    .+..++++.|+++|...+..|..+.+++++|+.
T Consensus        69 ~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~  148 (291)
T d1s70b_          69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE  148 (291)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCS
T ss_pred             cCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccc
Confidence            3566889999999999999999999999999988888888764    456889999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCc-------------------------cccCCCCCCccHHHHHHhhCcHHHHHHHHhc------
Q psy4236         101 YGHKDVVKYIIACAPSSI-------------------------LNMQDNDKGQTALHKAAMFKRRSICWMFLFF------  149 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~-------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~------  149 (208)
                      .+..+.++.++.......                         .... ...|.||||+|+..++.+++++|++.      
T Consensus       149 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~  227 (291)
T d1s70b_         149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH-AKSGGTALHVAAAKGYTEVLKLLIQARYDVNI  227 (291)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC-TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred             cccchhccccccccccccccccccccccccccchhhhcccccccccc-cCCCCChhhHHHHcCChhhhcccccceecccc
Confidence            999988888875321110                         1122 46789999999999999999999954      


Q ss_pred             -CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236         150 -SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLE  206 (208)
Q Consensus       150 -~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~  206 (208)
                       +..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|++    +++++|.
T Consensus       228 ~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~  281 (291)
T d1s70b_         228 KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLE  281 (291)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHH
Confidence             5679999999999999999999999999999999999999999975    4555543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.5e-26  Score=176.26  Aligned_cols=176  Identities=24%  Similarity=0.264  Sum_probs=154.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236          31 EGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDV  106 (208)
Q Consensus        31 ~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~  106 (208)
                      ||||.||+.|+.++|++|+++|+++|..+..|.+|++    .+..+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~   81 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM   81 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            7999999999999999999999999999999999975    467899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCc-------------------------------cccCCCCCCccHHHHHHhhCcHHHHHHHHhc------
Q psy4236         107 VKYIIACAPSSI-------------------------------LNMQDNDKGQTALHKAAMFKRRSICWMFLFF------  149 (208)
Q Consensus       107 ~~~ll~~g~~~~-------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~------  149 (208)
                      +++|+..++++.                               .... +..+.++++.++..++.+++++|++.      
T Consensus        82 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~  160 (408)
T d1n11a_          82 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  160 (408)
T ss_dssp             HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhhhccccccccccchhhhhhhhccccccccccccccccccc-ccccchHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            999998765421                               1112 34677889999999999999998854      


Q ss_pred             -CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         150 -SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       150 -~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                       +..+.+|||+|+..|+.+++++|+.+|++++..+..|.||++++......++...++.
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~  219 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ  219 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhh
Confidence             4567889999999999999999999999999999999999999999999888887753

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=5.4e-29  Score=190.58  Aligned_cols=186  Identities=16%  Similarity=0.030  Sum_probs=146.8

Q ss_pred             hHHHhhhhchHHHHHHHHhCCHHHHHH---HHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCC--CCC
Q psy4236          21 DIINILEKTSEGVLKAARVGDIKMLKD---LHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSID--SVG   91 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g~~~~~~~---Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d--~~g   91 (208)
                      +....+.++.|+|+.|++.|+.+++++   |+++|+++|.++..|.+|++    .++.+++++|+++|++++..+  ..|
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g  161 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN  161 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCC
Confidence            344556678899999999999887765   78999999999999998875    688999999999999998875  459


Q ss_pred             ccHHHHHHhcCCHHHHHHHHHcCCCCc-cccCCCCCCccHHHHHHhhCcHHHHHHHHhcC--------------------
Q psy4236          92 QTALHYGSRYGHKDVVKYIIACAPSSI-LNMQDNDKGQTALHKAAMFKRRSICWMFLFFS--------------------  150 (208)
Q Consensus        92 ~t~l~~a~~~g~~~~~~~ll~~g~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~--------------------  150 (208)
                      +||||+|+..|+.+++++|++.|+... .+.. ...+.||++.|+..|+.+++++|++.+                    
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  240 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQ-AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP  240 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHH-HHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred             CChhHHHHHHhhHHHHHHHHHcCCcccccccc-cCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhH
Confidence            999999999999999999999987521 1222 234567888889999999999987320                    


Q ss_pred             --------------------CC----------------CCcHHHHHHhhCCHHHHHHHHhCCCC-----CcccCCCCCCH
Q psy4236         151 --------------------SR----------------GQTALHKAAMFKRRSICCMLVAGGAS-----LTVKDYDSNTP  189 (208)
Q Consensus       151 --------------------~~----------------~~t~l~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~  189 (208)
                                          ..                +.++++.|+..+..+++++|++.+..     .+..+.+|.||
T Consensus       241 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~  320 (346)
T d2ajaa1         241 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL  320 (346)
T ss_dssp             HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred             HHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcH
Confidence                                11                12567777788889999999987754     33444578999


Q ss_pred             HHHHHHcCCHHHHHHHhh
Q psy4236         190 RALALLANDTELAAYLEK  207 (208)
Q Consensus       190 l~~a~~~~~~~~~~~L~~  207 (208)
                      ||+|+.+|+.+++++|++
T Consensus       321 LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         321 LRLALRLGNQGACALLLS  338 (346)
T ss_dssp             HHHHHHHTCTTHHHHHTT
T ss_pred             HHHHHHcCcHHHHHHHhC
Confidence            999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.1e-26  Score=148.38  Aligned_cols=118  Identities=14%  Similarity=0.128  Sum_probs=105.2

Q ss_pred             hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc---chHHHHHHHHHHcCCCCCcCCCCCc-cHHHHHHhcCC
Q psy4236          28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL---NHFFFQLKDLHSQGYSLLSIDSVGQ-TALHYGSRYGH  103 (208)
Q Consensus        28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~d~~g~-t~l~~a~~~g~  103 (208)
                      .+.++||.|+..|+.+++++|+++|++++.++..+.++++   .+..+++++|+++|++++.++..+. +|||+|++.|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSCTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3567999999999999999999999999999999988854   5678999999999999999988876 69999999999


Q ss_pred             HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh
Q psy4236         104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF  148 (208)
Q Consensus       104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~  148 (208)
                      .+++++|++.|++  ++.+ +..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~v~~Ll~~ga~--~~~~-d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGAR--LDVR-DAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCC--SSCC-CTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccc--cccc-cCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999988  7777 4789999999999999999888753

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=147.94  Aligned_cols=114  Identities=19%  Similarity=0.233  Sum_probs=102.4

Q ss_pred             CccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCC-CcHHHHHHh
Q psy4236          91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRG-QTALHKAAM  162 (208)
Q Consensus        91 g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~-~t~l~~A~~  162 (208)
                      +.++||+|+..|+.+++++|++.|++  ++.. +..|.||+|+|+ .|+.+++++|+++       +..+ .+|||+|+.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad--~n~~-~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN--PNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC--TTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc--cccc-cccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            45899999999999999999999998  7777 478999999775 6899999999965       3344 479999999


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         163 FKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       163 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      .|+.+++++|++.|++++.+|..|+||+|+|+.+|+.+++++|+++
T Consensus        79 ~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             cccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999864

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=1.2e-25  Score=166.24  Aligned_cols=174  Identities=21%  Similarity=0.235  Sum_probs=143.6

Q ss_pred             HHHHHHHH-hCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHH--------HHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236          31 EGVLKAAR-VGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFF--------QLKDLHSQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        31 ~~l~~A~~-~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~--------~~~~l~~~g~~~~~~d~~g~t~l~~   97 (208)
                      ||||.++. .|..++.+.|.+.++++... ..|.+|++    .+..+        ..+.+++.|+++|.+|..|+||||+
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~   80 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML   80 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecc
Confidence            57776654 56666777777777776543 35888875    22333        3466688999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh-----------------------------
Q psy4236          98 GSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF-----------------------------  148 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-----------------------------  148 (208)
                      |+..|+.+++++|++.|++  ++.+ +..|.||+++++..++.++.+++..                             
T Consensus        81 A~~~g~~~iv~~Ll~~Gad--~n~~-~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAGAD--PTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCC--SCCC-CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             ccccccccccccccccccc--cccc-cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            9999999999999999999  7777 4789999999999999888887651                             


Q ss_pred             -------------------------cCCCCCcHHHHHHhhCCHHHHHHHH-hCCCCCcccCCCCCCHHHHHHHcCCHHHH
Q psy4236         149 -------------------------FSSRGQTALHKAAMFKRRSICCMLV-AGGASLTVKDYDSNTPRALALLANDTELA  202 (208)
Q Consensus       149 -------------------------~~~~~~t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  202 (208)
                                               .+..|.||||.++..++.+++++++ ..+.+.+..|..|+||||+|+..|+.+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv  237 (277)
T d2fo1e1         158 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV  237 (277)
T ss_dssp             HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHH
Confidence                                     0245889999999999999998765 58999999999999999999999999999


Q ss_pred             HHHhhC
Q psy4236         203 AYLEKS  208 (208)
Q Consensus       203 ~~L~~~  208 (208)
                      ++|+++
T Consensus       238 ~~Ll~~  243 (277)
T d2fo1e1         238 MYLIQQ  243 (277)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            999863

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=4.3e-26  Score=148.20  Aligned_cols=107  Identities=22%  Similarity=0.291  Sum_probs=88.2

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHH
Q psy4236          30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKY  109 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~  109 (208)
                      .|||++|++.|+.+++++|+++|+                             +++.+|..|+||||+|+..|+.+++++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~-----------------------------d~n~~~~~g~t~lh~A~~~~~~~~~~~   53 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGE-----------------------------DVNRTLEGGRKPLHYAADCGQLEILEF   53 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTC-----------------------------CCCCCSSSSCCTTHHHHHHSTTTHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhh-----------------------------ccccccccccccccccccccccccccc
Confidence            369999999999999999666555                             445678889999999999999999999


Q ss_pred             HHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCH
Q psy4236         110 IIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP  189 (208)
Q Consensus       110 ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  189 (208)
                      +++.|++  ++.+                           +..|+||||+|+..|+.+++++|+++|+|++.+|.+|.||
T Consensus        54 ll~~g~d--in~~---------------------------d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~  104 (118)
T d1myoa_          54 LLLKGAD--INAP---------------------------DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA  104 (118)
T ss_dssp             HHHSSCT--TTCC---------------------------SSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCC
T ss_pred             cccccce--eeec---------------------------ccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCH
Confidence            9999987  6554                           2345556666667777888899999999999999999999


Q ss_pred             HHHHH
Q psy4236         190 RALAL  194 (208)
Q Consensus       190 l~~a~  194 (208)
                      +|+|.
T Consensus       105 l~~a~  109 (118)
T d1myoa_         105 LEATD  109 (118)
T ss_dssp             CCTCS
T ss_pred             HHHHh
Confidence            99883

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-24  Score=143.36  Aligned_cols=120  Identities=24%  Similarity=0.335  Sum_probs=95.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHH
Q psy4236          30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKY  109 (208)
Q Consensus        30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~  109 (208)
                      .++|+.|+..|+.+++++|+++|+                             +++.+|..|+||||+|+..|+.+++++
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~-----------------------------d~n~~d~~g~t~Lh~A~~~~~~~~~~~   52 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVD-----------------------------DPSLPNDEGITALHNAVCAGHTEIVKF   52 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTS-----------------------------SCCCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCC-----------------------------Ccccccccccccccccccccccccccc
Confidence            368899999999999999665554                             455678889999999999999999999


Q ss_pred             HHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCC-CCCC
Q psy4236         110 IIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY-DSNT  188 (208)
Q Consensus       110 ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t  188 (208)
                      |++.|++  ++..                           +.+|+||||+|+..|+.+++++|+++|++++..+. .+.|
T Consensus        53 ll~~g~~--~~~~---------------------------d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~  103 (130)
T d1ycsb1          53 LVQFGVN--VNAA---------------------------DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT  103 (130)
T ss_dssp             HHHHTCC--TTCC---------------------------CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred             ccccccc--cccc---------------------------cccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCC
Confidence            9999887  5544                           33455666666677778888899999999997764 5888


Q ss_pred             HHHHH--HHcCCHHHHHHHhh
Q psy4236         189 PRALA--LLANDTELAAYLEK  207 (208)
Q Consensus       189 ~l~~a--~~~~~~~~~~~L~~  207 (208)
                      |++++  ..+|+.+++++|++
T Consensus       104 ~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1         104 AADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHHcChHHHHHHHHh
Confidence            87766  56788999999974

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.8e-25  Score=166.81  Aligned_cols=164  Identities=17%  Similarity=0.113  Sum_probs=112.2

Q ss_pred             hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchH-----------HHHHHHHHHcCCCCCcCCCCCccH
Q psy4236          26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHF-----------FFQLKDLHSQGYSLLSIDSVGQTA   94 (208)
Q Consensus        26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~g~~~~~~d~~g~t~   94 (208)
                      +..|.||||+||..|+.++++.|+++|++++.++..|.+|++...           .++++++..   .++.+|..|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCCH
Confidence            677899999999999999999999999999999999999975322           234444433   456678889999


Q ss_pred             HHHHHhcCC----HH--------HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHH-----HH-----hcCCC
Q psy4236          95 LHYGSRYGH----KD--------VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM-----FL-----FFSSR  152 (208)
Q Consensus        95 l~~a~~~g~----~~--------~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~-----l~-----~~~~~  152 (208)
                      ||+++..+.    ..        ++.+++..+..... .. ...+.++++.+........+..     ++     .+|..
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ-SG-TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEE-EC-----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchh-cc-cccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            998876543    22        33455555543211 11 2334445544443322222221     11     34788


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHH
Q psy4236         153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALAL  194 (208)
Q Consensus       153 ~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  194 (208)
                      |+||||+|+..|+.+++++|++.|+|++.+|..|.|||+||+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999999999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.5e-23  Score=139.15  Aligned_cols=125  Identities=23%  Similarity=0.301  Sum_probs=96.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc---CCHHHH
Q psy4236          31 EGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY---GHKDVV  107 (208)
Q Consensus        31 ~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~---g~~~~~  107 (208)
                      ..|+.|++.++...+..++..|++++...                       .....+..|+||||+|+..   +..+++
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~-----------------------~~~~~~~~g~t~Lh~A~~~~~~~~~~iv   64 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKI-----------------------PLANGHEPDETALHLAVRSVDRTSLHIV   64 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBC-----------------------CCSSCSSTTCBHHHHHHHHCCTTTHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCC-----------------------CcccCCCCCCchHHHHHHhcCCCCHHHH
Confidence            36889999999999999999998875421                       2223456799999999975   678999


Q ss_pred             HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCC
Q psy4236         108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSN  187 (208)
Q Consensus       108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  187 (208)
                      ++|++.|++  ++.+ +..|+||||                          +|+..|+.+++++|+++|++++.+|.+|.
T Consensus        65 ~~Ll~~gad--in~~-d~~g~TpLh--------------------------~A~~~~~~~~v~~Ll~~gad~~~~d~~g~  115 (154)
T d1dcqa1          65 DFLVQNSGN--LDKQ-TGKGSTALH--------------------------YCCLTDNAECLKLLLRGKASIEIANESGE  115 (154)
T ss_dssp             HHHHHHCSC--TTCC-CTTCCCHHH--------------------------HHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             HHHHHcCCC--hhhh-hhhhccccc--------------------------cccccccccccccccccCccccccCCCCC
Confidence            999999988  7666 344555554                          45555666777778888888888888888


Q ss_pred             CHHHHHHHcCCHHHHHHHhh
Q psy4236         188 TPRALALLANDTELAAYLEK  207 (208)
Q Consensus       188 t~l~~a~~~~~~~~~~~L~~  207 (208)
                      ||+|+|+.+|+.+++++|++
T Consensus       116 tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1         116 TPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHH
Confidence            88888888888888888765

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.8e-24  Score=152.27  Aligned_cols=153  Identities=16%  Similarity=0.104  Sum_probs=134.3

Q ss_pred             HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCC------cCCCCCcc
Q psy4236          24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLL------SIDSVGQT   93 (208)
Q Consensus        24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~------~~d~~g~t   93 (208)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..+.+|+.    .+..++++.|++.+....      .....|.|
T Consensus        34 ~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t  113 (221)
T d1iknd_          34 FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT  113 (221)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred             cCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccch
Confidence            44667999999999999999999999999999999999999864    445788999999877643      23446889


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCH
Q psy4236          94 ALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRR  166 (208)
Q Consensus        94 ~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~  166 (208)
                      |||.|+..++.+.+++++..|+.  ++..++..|.||||+|+..|+.+++++|++.       +..|.||||+|+..++.
T Consensus       114 ~l~~a~~~~~~~~~~~l~~~~~~--~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~  191 (221)
T d1iknd_         114 CLHLASIHGYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST  191 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH
T ss_pred             hhhHHhhcCChhheeeecccCcc--cccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999987  7666556799999999999999999999954       57799999999999999


Q ss_pred             HHHHHHHhCCCC
Q psy4236         167 SICCMLVAGGAS  178 (208)
Q Consensus       167 ~~~~~Ll~~g~~  178 (208)
                      +++++|++.+.+
T Consensus       192 ~~~~~l~~~~~~  203 (221)
T d1iknd_         192 RIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHTTSCG
T ss_pred             HHHHHHHHcCCc
Confidence            999999987665

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=6.2e-23  Score=145.67  Aligned_cols=165  Identities=22%  Similarity=0.176  Sum_probs=118.6

Q ss_pred             HHHHHHHHHcCCCCcc-cCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCC
Q psy4236          42 IKMLKDLHSQGYSLKK-IPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPS  116 (208)
Q Consensus        42 ~~~~~~Li~~g~~~~~-~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~  116 (208)
                      .|+|++|+++|+++|. .+..|.+|++    .+..+++++|++.|++++..+..+.++++.++..+..............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            3667777777777765 3566666653    4556666666666666666666666666666666666555555544332


Q ss_pred             CccccCCCCCCccHHHHHHhhCcHHHHHHHHh-------cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCH
Q psy4236         117 SILNMQDNDKGQTALHKAAMFKRRSICWMFLF-------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP  189 (208)
Q Consensus       117 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-------~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  189 (208)
                        ........+.++.+.+.........+.|.+       .+..|.||++.++..+...+++.++..+.+++..|..|.||
T Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~Tp  159 (209)
T d1ot8a_          82 --NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP  159 (209)
T ss_dssp             --CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             --ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccc
Confidence              111112345566666666666666666553       35678999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHhhC
Q psy4236         190 RALALLANDTELAAYLEKS  208 (208)
Q Consensus       190 l~~a~~~~~~~~~~~L~~~  208 (208)
                      ||+|+.+|+.+++++|+++
T Consensus       160 L~~A~~~g~~~~v~~Ll~~  178 (209)
T d1ot8a_         160 LFLAAREGSYEASKALLDN  178 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHT
T ss_pred             cchhccccHHHHHHHHHHC
Confidence            9999999999999999863

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.1e-21  Score=145.36  Aligned_cols=155  Identities=25%  Similarity=0.225  Sum_probs=114.6

Q ss_pred             hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc-------------------------------------ch
Q psy4236          27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL-------------------------------------NH   69 (208)
Q Consensus        27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~-------------------------------------~~   69 (208)
                      ..|.||||.|+..|+.+++++|++.|..++........+..                                     .+
T Consensus        37 ~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~  116 (285)
T d1wdya_          37 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG  116 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhc
Confidence            35789999999999999999999999988776655544311                                     01


Q ss_pred             HHHHHHHHHHcCCCCCcC----------CCCCccHHHHHHhcCCHHHHHHHHH---------------------------
Q psy4236          70 FFFQLKDLHSQGYSLLSI----------DSVGQTALHYGSRYGHKDVVKYIIA---------------------------  112 (208)
Q Consensus        70 ~~~~~~~l~~~g~~~~~~----------d~~g~t~l~~a~~~g~~~~~~~ll~---------------------------  112 (208)
                      ....++.++....+++..          +..|.||||+|++.|+.+++++|++                           
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~  196 (285)
T d1wdya_         117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS  196 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTT
T ss_pred             chhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccch
Confidence            122344444444443322          2346677777777776666666654                           


Q ss_pred             -----------cCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236         113 -----------CAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSICCMLV  173 (208)
Q Consensus       113 -----------~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~~~~~~~Ll  173 (208)
                                 +|++  ++.+ +..|.||||+|+..++.+++++|+++        +..|.||||+|+..|+.+++++|+
T Consensus       197 ~~~~i~~~Li~~ga~--~n~~-~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll  273 (285)
T d1wdya_         197 DVEAITHLLLDHGAD--VNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC  273 (285)
T ss_dssp             THHHHHHHHHHTTCC--SSCC-CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCC--CCcc-CCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                       3444  4444 46799999999999999999999853        467999999999999999999999


Q ss_pred             hCCCCCcccCC
Q psy4236         174 AGGASLTVKDY  184 (208)
Q Consensus       174 ~~g~~~~~~~~  184 (208)
                      ++|||+|.+|.
T Consensus       274 ~~GAd~n~~d~  284 (285)
T d1wdya_         274 KRGASTDCGDL  284 (285)
T ss_dssp             HHSSCSCCSSC
T ss_pred             HCCCCCCcccC
Confidence            99999999874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.5e-21  Score=134.89  Aligned_cols=145  Identities=21%  Similarity=0.182  Sum_probs=125.2

Q ss_pred             CCCCCcc----chHHHHHHHHH----HcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHH
Q psy4236          61 KDDHPNL----NHFFFQLKDLH----SQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH  132 (208)
Q Consensus        61 ~~~~~~~----~~~~~~~~~l~----~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~  132 (208)
                      .|.||++    .+..++++.|+    +.|++++.+|..|+||||+|+..|+.+++++|++.|++  .+.. ...+.++++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~--~~~~-~~~~~~~~~   78 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS--PMAL-DRHGQTAAH   78 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCC-CTTSCCHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc--cccc-ccccccccc
Confidence            4667764    44567776665    58999999999999999999999999999999999988  6666 467889999


Q ss_pred             HHHhhCcHHHHHHHHh---------------------------------------------cCCCCCcHHHHHHhhCCHH
Q psy4236         133 KAAMFKRRSICWMFLF---------------------------------------------FSSRGQTALHKAAMFKRRS  167 (208)
Q Consensus       133 ~a~~~~~~~~~~~l~~---------------------------------------------~~~~~~t~l~~A~~~~~~~  167 (208)
                      .+...+..++++....                                             ....+.++++.|+..+...
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            9998888887776541                                             0245789999999999999


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         168 ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       168 ~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      +++.++..|.+.+.+|..|.||+++|+.+|+.+++++|+++
T Consensus       159 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  199 (228)
T d1k1aa_         159 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS  199 (228)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred             hhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHC
Confidence            99999999999999999999999999999999999999863

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=6.8e-21  Score=142.64  Aligned_cols=174  Identities=14%  Similarity=0.099  Sum_probs=106.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc-----chHHHHHHHHHHcCCCCCcC-CCCCccHHHHHHhcCCHH
Q psy4236          32 GVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL-----NHFFFQLKDLHSQGYSLLSI-DSVGQTALHYGSRYGHKD  105 (208)
Q Consensus        32 ~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~g~~~~~~-d~~g~t~l~~a~~~g~~~  105 (208)
                      .+...+.....+....+...+.+.+...........     ....++...+...+.++|.. |..|+||||+|+..|+.+
T Consensus        42 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~  121 (301)
T d1sw6a_          42 FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE  121 (301)
T ss_dssp             HHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHhcccchhhhhhhcccccccccccccccchhHHHHHHHHHHHHHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHH
Confidence            444444444555555555544444333222211111     11122222233457788865 899999999999999999


Q ss_pred             HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCc-------HHHHHHHH----hcCCCCCcHHHHHHhhCCH----H---
Q psy4236         106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR-------RSICWMFL----FFSSRGQTALHKAAMFKRR----S---  167 (208)
Q Consensus       106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~-------~~~~~~l~----~~~~~~~t~l~~A~~~~~~----~---  167 (208)
                      ++++|++.|++  ++.+ +..|+||||.|+..++       .++++++.    ..+..|+||||.++..+..    .   
T Consensus       122 ~v~~Ll~~gad--~~~~-d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~  198 (301)
T d1sw6a_         122 LVKHLVKHGSN--RLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK  198 (301)
T ss_dssp             HHHHHHHTTCC--TTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHCCCC--CCcC-CcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHHHHhCccccHHHHH
Confidence            99999999999  8877 5789999999998664       24455443    3478899999988865442    2   


Q ss_pred             -----HHHHHHhCCCC-------------------------------------CcccCCCCCCHHHHHHHcCCHHHHHHH
Q psy4236         168 -----ICCMLVAGGAS-------------------------------------LTVKDYDSNTPRALALLANDTELAAYL  205 (208)
Q Consensus       168 -----~~~~Ll~~g~~-------------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~L  205 (208)
                           ++.++...+..                                     +|.+|.+|+||||+|+.+|+.+++++|
T Consensus       199 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~L  278 (301)
T d1sw6a_         199 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL  278 (301)
T ss_dssp             HHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                 22333333222                                     688899999999999999999999999


Q ss_pred             hhC
Q psy4236         206 EKS  208 (208)
Q Consensus       206 ~~~  208 (208)
                      ++.
T Consensus       279 l~~  281 (301)
T d1sw6a_         279 LDY  281 (301)
T ss_dssp             HHT
T ss_pred             HHC
Confidence            863

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.6e-20  Score=127.44  Aligned_cols=121  Identities=19%  Similarity=0.218  Sum_probs=65.3

Q ss_pred             HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236          22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHY   97 (208)
Q Consensus        22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~   97 (208)
                      ....+..|.||||.|+ .|+.+++++|++++.+++..+..+.+++.    .+..++++.++++|++++.+|..|.||||+
T Consensus        29 ~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~  107 (156)
T d1bd8a_          29 PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL  107 (156)
T ss_dssp             TTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeecc
Confidence            3344567889999887 48899999988877777655444444322    223444444444444444444444455555


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH
Q psy4236          98 GSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL  147 (208)
Q Consensus        98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  147 (208)
                      |+..|+.+++++|+ .|++  ++.+ +..|+||||+|+..|+.+++++|+
T Consensus       108 A~~~~~~~i~~~L~-~~~~--~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_         108 AVQEGHTAVVSFLA-AESD--LHRR-DARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHHHTCHHHHHHHH-TTSC--TTCC-CTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             cccccccccccccc-cccc--cccc-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            54444444444443 3333  3333 234444444444444444444443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=7.9e-24  Score=161.66  Aligned_cols=102  Identities=15%  Similarity=0.061  Sum_probs=43.6

Q ss_pred             HHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCC-CCCCccHHHHHHhhCcHHHHHHHHhcC-----
Q psy4236          77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD-NDKGQTALHKAAMFKRRSICWMFLFFS-----  150 (208)
Q Consensus        77 l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~l~~~~-----  150 (208)
                      |++.|++++.+|..|+||||+|++.|+.+++++|++.|++  ++..+ ...|+||||+|+..|+.+++++|++.+     
T Consensus       112 L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~--~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~  189 (346)
T d2ajaa1         112 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT--EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT  189 (346)
T ss_dssp             C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT--THHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH
T ss_pred             HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC--ccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccc
Confidence            4444444444444444555555555555555555544444  22211 122444555555555555555444321     


Q ss_pred             -----CCCCcHHHHHHhhCCHHHHHHHHhCCCCCc
Q psy4236         151 -----SRGQTALHKAAMFKRRSICCMLVAGGASLT  180 (208)
Q Consensus       151 -----~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~  180 (208)
                           ..+.||++.|+..|+.+++++|++.|++++
T Consensus       190 ~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             cccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence                 112234444444445555555554444443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5e-20  Score=124.71  Aligned_cols=123  Identities=18%  Similarity=0.296  Sum_probs=74.1

Q ss_pred             hHHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236          21 DIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR  100 (208)
Q Consensus        21 ~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~  100 (208)
                      ++...+..|.||||.|+ .|+.+++++|+++|++++..                             +..+.++++.++.
T Consensus        26 d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~-----------------------------~~~~~~~l~~~~~   75 (156)
T d1ihba_          26 NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLK-----------------------------DRTGFAVIHDAAR   75 (156)
T ss_dssp             CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCC-----------------------------CTTSCCHHHHHHH
T ss_pred             CcCccCCcccccccccc-cccccccccccccccccccc-----------------------------cccCccccccccc
Confidence            34445677899999886 79999999988877766554                             4445555555555


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCCHHHHHHH
Q psy4236         101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSICCML  172 (208)
Q Consensus       101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~~~~~~~L  172 (208)
                      .+..+.++.+++.+.+  ++.. +..|.+|+++|+..++.+++++|+++        +..|+||||+|+..++.+++++|
T Consensus        76 ~~~~~~~~~l~~~~~~--~~~~-~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          76 AGFLDTLQTLLEFQAD--VNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             HTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccccccc--cccc-ccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            5555555555555544  3333 24455555555555555555554422        34455666666666666666666


Q ss_pred             HhCC
Q psy4236         173 VAGG  176 (208)
Q Consensus       173 l~~g  176 (208)
                      +++|
T Consensus       153 l~~G  156 (156)
T d1ihba_         153 QANG  156 (156)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            6554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.1e-19  Score=122.65  Aligned_cols=112  Identities=27%  Similarity=0.259  Sum_probs=102.7

Q ss_pred             ccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhC
Q psy4236          92 QTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFK  164 (208)
Q Consensus        92 ~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~  164 (208)
                      .|||+.|++.|+.+++++|+++|++  ++ . +..|+||||+|+..++.++++.+...       ...+.++++.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~--~~-~-~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP--FT-T-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC--CC-C-CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC--cc-c-ccCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            4899999999999999999999987  54 3 47899999999999999999988744       355778999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236         165 RRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK  207 (208)
Q Consensus       165 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~  207 (208)
                      +.++++++...|++.+..+.+|.||||+|+..|+.+++++|++
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~  121 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK  121 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccc
Confidence            9999999999999999999999999999999999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.6e-19  Score=116.66  Aligned_cols=88  Identities=23%  Similarity=0.241  Sum_probs=73.7

Q ss_pred             ccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHH
Q psy4236          92 QTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCM  171 (208)
Q Consensus        92 ~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~  171 (208)
                      .|||++|++.|+.+++++|++.|++  ++..+ ..|                          .||||+|+..|+.+++++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d--~n~~~-~~g--------------------------~t~lh~A~~~~~~~~~~~   53 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED--VNRTL-EGG--------------------------RKPLHYAADCGQLEILEF   53 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC--CCCCS-SSS--------------------------CCTTHHHHHHSTTTHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc--ccccc-ccc--------------------------cccccccccccccccccc
Confidence            3799999999999999999999887  65552 444                          455555556677788889


Q ss_pred             HHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         172 LVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       172 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      |++.|++++.+|..|+||||+|+.+|+.+++++|+++
T Consensus        54 ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~   90 (118)
T d1myoa_          54 LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK   90 (118)
T ss_dssp             HHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTT
T ss_pred             cccccceeeecccccccchhhhhhcCchhhhhhhhcc
Confidence            9999999999999999999999999999999999864

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=4.5e-19  Score=119.65  Aligned_cols=92  Identities=21%  Similarity=0.239  Sum_probs=75.7

Q ss_pred             hhhchHHHHHHHHh---CCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcC
Q psy4236          26 LEKTSEGVLKAARV---GDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYG  102 (208)
Q Consensus        26 ~~~~~~~l~~A~~~---g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g  102 (208)
                      ...|.||||+|++.   |..+++++|+++                             |++++.+|..|+||||+|+..|
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-----------------------------gadin~~d~~g~TpLh~A~~~~   92 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQN-----------------------------SGNLDKQTGKGSTALHYCCLTD   92 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHH-----------------------------CSCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHc-----------------------------CCChhhhhhhhccccccccccc
Confidence            45578899999975   567888886554                             4555678899999999999999


Q ss_pred             CHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc
Q psy4236         103 HKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF  149 (208)
Q Consensus       103 ~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  149 (208)
                      +.+++++|++.|++  ++.+ +..|+||||+|+..|+.+++++|++.
T Consensus        93 ~~~~v~~Ll~~gad--~~~~-d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          93 NAECLKLLLRGKAS--IEIA-NESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             CHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccCcc--cccc-CCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999998  7777 57888888888888888888877754

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.1e-19  Score=115.26  Aligned_cols=87  Identities=31%  Similarity=0.333  Sum_probs=72.9

Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHH
Q psy4236          93 TALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCML  172 (208)
Q Consensus        93 t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~L  172 (208)
                      ++|+.|+..|+.+++++|++.|++  ++.+ +..|+|||                          |+|+..|+.+++++|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d--~n~~-d~~g~t~L--------------------------h~A~~~~~~~~~~~l   53 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD--PSLP-NDEGITAL--------------------------HNAVCAGHTEIVKFL   53 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS--CCCC-CTTSCCHH--------------------------HHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC--cccc-cccccccc--------------------------ccccccccccccccc
Confidence            578899999999999999999988  6665 34455555                          555566667778888


Q ss_pred             HhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236         173 VAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS  208 (208)
Q Consensus       173 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~  208 (208)
                      ++.|++++..|.+|+||||+|+.+|+.+++++|+++
T Consensus        54 l~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~   89 (130)
T d1ycsb1          54 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES   89 (130)
T ss_dssp             HHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccccCcccccccchhhHHHHHHHHHHc
Confidence            889999999999999999999999999999999863